BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043459
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 123/252 (48%), Gaps = 41/252 (16%)
Query: 12 EKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPN 71
E+EE ++ L+EK + +DD TL RFLRAR D+ + MF++ +WR+ + N
Sbjct: 38 EQEEALLQFRSILLEKN--YKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGAN 95
Query: 72 GSISLSEVPNELSQN------KMFMQGF---DKKGRPIATVLGARHFQNKLGGL------ 116
I E E KM+ Q + DK GRP+ + +LGG+
Sbjct: 96 TIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPL--------YFEELGGINLKKMY 147
Query: 117 -------------EEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNS-DLRAYLG 162
+E++ F Y + R E + DLKG SN+ + +Y+
Sbjct: 148 KITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIK 207
Query: 163 ALS-ILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEE 221
++ I Q+YYPER+GK +I+H+P+ F T++K+V PF+D T KI F+ K LL++
Sbjct: 208 DVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKI-FILGSSYKKELLKQ 266
Query: 222 IDESQIPEIYGG 233
I +P YGG
Sbjct: 267 IPIENLPVKYGG 278
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 123/252 (48%), Gaps = 41/252 (16%)
Query: 12 EKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPN 71
E+EE ++ L+EK + +DD TL RFLRAR D+ + MF++ +WR+ + N
Sbjct: 38 EQEEALLQFRSILLEKN--YKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGAN 95
Query: 72 GSISLSEVPNELSQN------KMFMQGF---DKKGRPIATVLGARHFQNKLGGL------ 116
I E E KM+ Q + DK GRP+ + +LGG+
Sbjct: 96 TIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPL--------YFAELGGINLKKMY 147
Query: 117 -------------EEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNS-DLRAYLG 162
+E++ F Y + R E + DLKG SN+ + +Y+
Sbjct: 148 KITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIK 207
Query: 163 ALS-ILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEE 221
++ I Q+YYPER+GK +I+H+P+ F T++K+V PF+D T KI F+ K LL++
Sbjct: 208 DVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKI-FILGSSYKKELLKQ 266
Query: 222 IDESQIPEIYGG 233
I +P YGG
Sbjct: 267 IPIENLPVKYGG 278
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 120/243 (49%), Gaps = 20/243 (8%)
Query: 9 NIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTF 68
N+D +E + +R L+E + +DD TL RFLRAR DV+ A MF KWR+ +
Sbjct: 25 NLDSAQEKALAELRKLLEDAG-FIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDY 83
Query: 69 VPNG---SISLSEVPNELSQNKMFMQGFDKKGRPIA-TVLGA--RHFQNKLGGLEEFKRF 122
+ E P + DK GRP+ LGA H NK+ E +
Sbjct: 84 GTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKN 143
Query: 123 VVYILDKI-------CSRMPPGQ--EKFVVIGDLKGWGYSNS-DLRAYLGALS-ILQDYY 171
+V+ + + CSR G E I DLKG S++ + +Y+ S I Q+YY
Sbjct: 144 LVWEYESVVQYRLPACSRAA-GHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYY 202
Query: 172 PERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIY 231
PER+GK +I++AP+ F T +++ PF+D T KI F+ + LL++I +P +
Sbjct: 203 PERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKI-FILGSSYQKELLKQIPAENLPVKF 261
Query: 232 GGQ 234
GG+
Sbjct: 262 GGK 264
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 30/253 (11%)
Query: 7 KSNIDEKEETK---IRLMRALVEKQDPSSKEV-----------DDPTLRRFLRARDLDVE 52
K ++E+EET+ +R ++ +V+ Q S +E+ D RF+RAR +V
Sbjct: 48 KDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVG 107
Query: 53 KASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKMF---MQGFDKKGRPIATVLGARHF 109
+A + Y+ +R + P SLS + + + DK GR + + ++
Sbjct: 108 RAYELLRGYVNFRLQY-PELFDSLSPEAVRCTIEAGYPGVLSSRDKYGR-VVMLFNIENW 165
Query: 110 QNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGW------GYSNSDLRAYLGA 163
Q++ +E + +IL+K+ F +I + KG+ SDLR
Sbjct: 166 QSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRK---M 222
Query: 164 LSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEID 223
+ +LQD +P R + +H P+ F T + +V PF+ + ++ VFV L S +EID
Sbjct: 223 VDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER-VFVHGDDL-SGFYQEID 280
Query: 224 ESQIPEIYGGQLP 236
E+ +P +GG LP
Sbjct: 281 ENILPSDFGGTLP 293
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 18/243 (7%)
Query: 8 SNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQT 67
++ +++ + R V+ P+ DD L R+LRAR D++K+ M K++++R+
Sbjct: 6 GDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQ 65
Query: 68 FVPNGSISLSEVPNELSQNKMF--MQGFDKKGRP----IATVLGARH--FQNKLGGLEEF 119
+ IS P E+ Q + M G+D G P I L A+ F L
Sbjct: 66 KDIDNIISWQ--PPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRT 123
Query: 120 KRFVVYILDKIC----SRMPPGQEKFVVIGDLKGWGYSN---SDLRAYLGALSILQDYYP 172
K +L + C +++ E +I D +G G + + AY L + ++ YP
Sbjct: 124 KMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYP 183
Query: 173 ERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYG 232
E L +LF+V AP +F + ++ PF+ +T+KKI+ V K LL+ I Q+P YG
Sbjct: 184 ETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIM-VLGANWKEVLLKHISPDQVPVEYG 242
Query: 233 GQL 235
G +
Sbjct: 243 GTM 245
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 18/243 (7%)
Query: 8 SNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQT 67
++ +++ + R V+ P+ DD L R+LRAR D++K+ M K++++R+
Sbjct: 6 GDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQ 65
Query: 68 FVPNGSISLSEVPNELSQNKMF--MQGFDKKGRP----IATVLGARH--FQNKLGGLEEF 119
+ IS P E+ Q + M G+D G P I L A+ F L
Sbjct: 66 KDIDNIISWQ--PPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRT 123
Query: 120 KRFVVYILDKIC----SRMPPGQEKFVVIGDLKGWGYSN---SDLRAYLGALSILQDYYP 172
K +L + C +++ E +I D +G G + + AY L + ++ YP
Sbjct: 124 KMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYP 183
Query: 173 ERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYG 232
E L +LF+V AP +F + ++ PF+ +T+KKI+ V K LL+ I Q+P YG
Sbjct: 184 ETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIM-VLGANWKEVLLKHISPDQVPVEYG 242
Query: 233 GQL 235
G +
Sbjct: 243 GTM 245
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 115/253 (45%), Gaps = 30/253 (11%)
Query: 7 KSNIDEKEETK---IRLMRALVEKQDPSSKEV-----------DDPTLRRFLRARDLDVE 52
K ++E+EET+ +R ++ V+ Q S +E+ D RF+RAR +V
Sbjct: 48 KDELNEREETREEAVRELQEXVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVG 107
Query: 53 KASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKMF---MQGFDKKGRPIATVLGARHF 109
+A + Y+ +R + P SLS + + + DK GR + + ++
Sbjct: 108 RAYELLRGYVNFRLQY-PELFDSLSPEAVRCTIEAGYPGVLSSRDKYGR-VVXLFNIENW 165
Query: 110 QNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGW------GYSNSDLRAYLGA 163
Q++ +E + +IL+K+ F +I + KG+ SDLR
Sbjct: 166 QSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTXQQAASLRTSDLRK---X 222
Query: 164 LSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEID 223
+ LQD +P + +H P+ F T + +V PF+ + ++ VFV L S +EID
Sbjct: 223 VDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER-VFVHGDDL-SGFYQEID 280
Query: 224 ESQIPEIYGGQLP 236
E+ +P +GG LP
Sbjct: 281 ENILPSDFGGTLP 293
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 26/210 (12%)
Query: 42 RFLRARDLDVEKASGMFLKYLKWRQTF-------VPNGSISLSEVPNELSQNKMFMQGFD 94
R+LRA ++ L WR+ F I+ V E K + G++
Sbjct: 92 RYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYE 151
Query: 95 KKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWG--- 151
RPI + R QN + + +V++L+++ MP GQ+ ++ D K +
Sbjct: 152 NDARPILYLKPGR--QNTKTSHRQVQH-LVFMLERVIDFMPAGQDSLALLIDFKDYPDVP 208
Query: 152 --YSNSDLRAYLGA----LSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKK 205
NS + +G L ILQ +YPERLGK + + P++ T K+++PFID T++K
Sbjct: 209 KVPGNSKIPP-IGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREK 267
Query: 206 IVFVQDKKLKSTLLEEIDESQIPEIYGGQL 235
+VF ++ + ++++ +YGG L
Sbjct: 268 LVF------DEPFVKYVPKNELDSLYGGDL 291
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 18/241 (7%)
Query: 8 SNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQT 67
++ +++ + R V+ P+ DD L R+LRAR D++K+ K++++R+
Sbjct: 6 GDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAXLRKHVEFRKQ 65
Query: 68 FVPNGSISLSEVPNELSQNKMF--MQGFDKKGRP----IATVLGARH--FQNKLGGLEEF 119
+ IS P E+ Q + G+D G P I L A+ F L
Sbjct: 66 KDIDNIISWQ--PPEVIQQYLSGGXCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRT 123
Query: 120 KRFVVYILDKIC----SRMPPGQEKFVVIGDLKGWGYSN---SDLRAYLGALSILQDYYP 172
K +L + C +++ E +I D +G G + + AY L ++ YP
Sbjct: 124 KXRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYP 183
Query: 173 ERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYG 232
E L +LF+V AP +F + ++ PF+ +T+KKI V K LL+ I Q+P YG
Sbjct: 184 ETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIX-VLGANWKEVLLKHISPDQVPVEYG 242
Query: 233 G 233
G
Sbjct: 243 G 243
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 14/208 (6%)
Query: 35 VDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKMFMQGFD 94
+ D L RFLRARD D++ A + Y KWR P S L + + K G
Sbjct: 47 LTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAE-CPEISADLHPR-SIIGLLKAGYHGVL 104
Query: 95 KKGRPIAT-VLGAR--HFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWG 151
+ P + VL R H+ K+ + R + + I + + I DL+GW
Sbjct: 105 RSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQ 164
Query: 152 YSNS-----DLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKI 206
+S++ + + A +L D +P ++ + +++ P IF V+ ++ PF+ K++I
Sbjct: 165 FSHAFQITPSVAKKIAA--VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 222
Query: 207 VFVQDKKLKSTLLEEIDESQIPEIYGGQ 234
+ K +LL+ + +P YGG+
Sbjct: 223 -HMHGNNYKQSLLQHFPDI-LPLEYGGE 248
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 14/208 (6%)
Query: 35 VDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKMFMQGFD 94
+ D L RFLRARD D++ A + Y KWR P S L + + K G
Sbjct: 31 LTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAE-CPEISADLHPR-SIIGLLKAGYHGVL 88
Query: 95 KKGRPIAT-VLGAR--HFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWG 151
+ P + VL R H+ K+ + R + + I + + I DL+GW
Sbjct: 89 RSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQ 148
Query: 152 YSNS-----DLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKI 206
+S++ + + A +L D +P ++ + +++ P IF V+ + PF+ K++I
Sbjct: 149 FSHAFQITPSVAKKIAA--VLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKERI 206
Query: 207 VFVQDKKLKSTLLEEIDESQIPEIYGGQ 234
K +LL+ + +P YGG+
Sbjct: 207 -HXHGNNYKQSLLQHFPDI-LPLEYGGE 232
>pdb|4AKK|A Chain A, Structure Of The Nasr Transcription Antiterminator
pdb|4AKK|B Chain B, Structure Of The Nasr Transcription Antiterminator
Length = 423
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 39 TLRRFLRARDLDVEKASGMFLKYLKWRQTFVP--NGSISLSEVPNELSQNKMFMQGFDKK 96
LR+ +R R++ E+A+G F + ++ VP N SI ++ + FMQG +
Sbjct: 140 ALRKRVRDREIAAEEATGQFSRIIRHLLNIVPQLNDSIDDPQIAGRMVALYSFMQGKELA 199
Query: 97 GRPIATVLGARHF 109
G+ A LGA F
Sbjct: 200 GQERA--LGALGF 210
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Query: 90 MQGFDKKG--RPIATVLGARHFQNKLG--GLEEF-KRFVVYIL--DKICSRMP---PGQE 139
M G+D G R + LG + KL GL+ K ++++L D++ + P P E
Sbjct: 1 MAGWDIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE 60
Query: 140 KFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHA 183
+ + IG++K ++ DL ++ A + +DY+PE G +F+V A
Sbjct: 61 E-LAIGNIK---FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA 100
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 128 DKICSRMP---PGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHA 183
D++ + P P E+ + IG++K ++ DL ++ A + +DY+PE G +F+V A
Sbjct: 24 DRLATLQPTWHPTSEE-LAIGNIK---FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA 78
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 209 VQDKKLKSTLLEEIDESQIPEIYGGQLPLVPIQET 243
V +KL T+LE++ +Q+PE+ GG L P T
Sbjct: 356 VATRKLSETVLEDV-YNQLPELIGGSADLTPSNLT 389
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 209 VQDKKLKSTLLEEIDESQIPEIYGGQLPLVPIQET 243
V +KL T+LE++ +Q+PE+ GG L P T
Sbjct: 356 VATRKLSETVLEDV-YNQLPELIGGSADLTPSNLT 389
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 209 VQDKKLKSTLLEEIDESQIPEIYGGQLPLVPIQET 243
V +KL T+LE++ +Q+PE+ GG L P T
Sbjct: 354 VATRKLSETVLEDV-YNQLPELIGGSADLTPSNLT 387
>pdb|3SZA|A Chain A, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZA|B Chain B, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZB|A Chain A, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
pdb|3SZB|B Chain B, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
Length = 469
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 20 LMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFV-PNGSISLSE 78
+M A + P + E+ + + DLDV + K++ QT V P+ +
Sbjct: 212 IMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMNSGQTCVAPDYILCDPS 271
Query: 79 VPNELSQN-----KMFMQGFDKKGRPIATVLGARHFQNKLGGLE 117
+ N++ + K F KK R ++ ARHFQ +G +E
Sbjct: 272 IQNQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIE 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,416,048
Number of Sequences: 62578
Number of extensions: 307781
Number of successful extensions: 625
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 598
Number of HSP's gapped (non-prelim): 23
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)