Query 043459
Match_columns 243
No_of_seqs 129 out of 1174
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 08:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r5l_A Alpha-TTP, protein (alp 100.0 9.3E-51 3.2E-55 332.4 16.6 229 7-238 1-236 (262)
2 1aua_A Phosphatidylinositol tr 100.0 1.5E-49 5.1E-54 330.6 21.4 231 7-239 23-269 (296)
3 3hx3_A Retinaldehyde-binding p 100.0 3.2E-50 1.1E-54 336.7 16.2 224 12-239 56-296 (316)
4 3q8g_A CRAL-TRIO domain-contai 100.0 5.2E-50 1.8E-54 335.5 17.3 232 7-240 32-285 (320)
5 1olm_A SEC14-like protein 2; l 100.0 1.1E-48 3.8E-53 338.2 21.7 232 7-240 5-250 (403)
6 3pg7_A Neurofibromin; SEC lipi 99.6 2.6E-15 8.9E-20 121.1 8.0 140 78-227 3-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.5 5.4E-14 1.8E-18 115.0 5.8 131 86-226 30-162 (290)
8 2dam_A ETEA protein; KIAA0887, 92.7 0.42 1.4E-05 29.5 6.0 45 8-59 12-56 (67)
9 1ufz_A Hypothetical protein BA 90.7 0.43 1.5E-05 30.6 4.5 49 7-61 23-75 (83)
10 2dal_A Protein KIAA0794; FAS a 90.5 0.81 2.8E-05 27.7 5.5 43 8-58 9-51 (62)
11 1wgl_A TOLL-interacting protei 90.4 0.57 2E-05 28.1 4.7 40 15-61 10-49 (59)
12 2dhy_A CUE domain-containing p 87.6 1.4 4.7E-05 27.2 5.1 42 13-61 17-58 (67)
13 2di0_A Activating signal coint 86.5 2 6.9E-05 26.7 5.3 41 13-60 12-52 (71)
14 1v92_A NSFL1 cofactor P47; 3-h 85.0 2 6.8E-05 23.9 4.6 37 14-58 5-41 (46)
15 1otr_A Protein CUE2; protein-p 84.7 1.4 4.8E-05 25.3 3.8 41 14-61 4-44 (49)
16 1z96_A DNA-damage, UBA-domain 84.1 1.9 6.6E-05 23.1 4.2 37 13-58 3-39 (40)
17 3e21_A HFAF1, FAS-associated f 82.4 1.5 5.2E-05 24.6 3.2 37 13-57 4-41 (45)
18 1oai_A Nuclear RNA export fact 79.8 7.4 0.00025 23.1 6.2 47 9-63 2-48 (59)
19 1q02_A Sequestosome 1; helical 78.5 6.2 0.00021 22.7 4.9 25 35-59 24-48 (52)
20 2jp7_A MRNA export factor MEX6 77.4 8.8 0.0003 22.6 5.9 44 9-60 1-44 (57)
21 1wgn_A UBAP1, ubiquitin associ 76.9 9.6 0.00033 22.8 6.6 44 9-61 14-57 (63)
22 2q3l_A Uncharacterized protein 74.5 14 0.00048 25.5 7.1 82 114-201 30-111 (126)
23 3o39_A Periplasmic protein rel 72.1 6.4 0.00022 26.6 4.6 58 4-61 12-69 (108)
24 2dzl_A Protein FAM100B; UBA-li 68.6 12 0.00041 22.7 4.9 35 16-58 19-53 (66)
25 2bwb_A Ubiquitin-like protein 65.8 8.3 0.00028 21.6 3.5 25 35-59 20-44 (46)
26 2dah_A Ubiquilin-3; UBA domain 64.6 12 0.0004 21.7 4.1 39 15-61 10-48 (54)
27 1wr1_B Ubiquitin-like protein 63.8 9.3 0.00032 22.6 3.6 38 15-60 18-55 (58)
28 1ify_A HHR23A, UV excision rep 62.9 18 0.00062 20.3 5.0 40 12-60 6-45 (49)
29 2dna_A Unnamed protein product 60.5 15 0.0005 22.5 4.1 39 15-61 20-58 (67)
30 1vej_A Riken cDNA 4931431F19; 55.2 16 0.00055 22.8 3.8 38 15-60 30-67 (74)
31 3itf_A Periplasmic adaptor pro 54.0 55 0.0019 23.2 6.9 59 5-63 41-99 (145)
32 2jy5_A Ubiquilin-1; UBA, alter 53.9 17 0.00057 20.8 3.5 37 15-59 13-49 (52)
33 2knz_A Ubiquilin-4; cytoplasm, 53.8 29 0.00099 19.8 5.6 25 36-60 25-49 (53)
34 1p3q_Q VPS9P, vacuolar protein 53.6 8.5 0.00029 22.4 2.1 40 13-59 11-50 (54)
35 3bq3_A Defective in cullin ned 53.6 18 0.0006 28.8 4.7 48 6-61 7-54 (270)
36 1wj7_A Hypothetical protein (R 50.8 38 0.0013 22.6 5.2 27 35-61 52-78 (104)
37 2cp8_A NEXT to BRCA1 gene 1 pr 49.4 29 0.00099 20.2 3.9 37 17-61 12-48 (54)
38 3lay_A Zinc resistance-associa 49.3 9.8 0.00034 28.1 2.4 61 8-68 66-129 (175)
39 2cwb_A Chimera of immunoglobul 49.2 21 0.00071 24.1 3.8 26 35-60 79-104 (108)
40 1wji_A Tudor domain containing 48.2 30 0.001 20.7 4.1 27 35-61 21-47 (63)
41 2ka5_A Putative anti-sigma fac 47.3 60 0.0021 21.8 6.3 52 141-195 53-104 (125)
42 3kdg_A DNA mismatch repair pro 47.3 33 0.0011 25.6 5.2 96 9-104 66-184 (197)
43 2cp9_A EF-TS, EF-TSMT, elongat 46.9 45 0.0015 20.1 5.1 38 16-61 11-48 (64)
44 2ahq_A Sigma-54, RNA polymeras 45.3 44 0.0015 20.8 4.7 44 17-61 21-65 (76)
45 2g3q_A Protein YBL047C; endocy 45.0 29 0.00098 18.7 3.4 25 35-59 16-40 (43)
46 1sbo_A Putative anti-sigma fac 44.2 61 0.0021 20.8 6.3 51 142-195 46-96 (110)
47 1veg_A NEDD8 ultimate buster-1 43.9 36 0.0012 21.7 4.2 38 15-61 30-67 (83)
48 1vg5_A RSGI RUH-014, rhomboid 43.2 28 0.00096 21.6 3.5 26 35-60 41-66 (73)
49 3ny7_A YCHM protein, sulfate t 42.4 63 0.0021 21.5 5.6 51 141-195 47-97 (118)
50 1vdl_A Ubiquitin carboxyl-term 41.2 60 0.002 20.1 4.6 40 14-60 24-63 (80)
51 4ae4_A Ubiquitin-associated pr 40.0 86 0.003 21.3 6.3 48 8-64 2-49 (118)
52 2d9s_A CBL E3 ubiquitin protei 38.6 57 0.0019 18.8 4.2 27 35-61 21-47 (53)
53 4hyl_A Stage II sporulation pr 38.5 82 0.0028 20.6 5.8 51 142-195 44-94 (117)
54 3llo_A Prestin; STAS domain, c 37.9 96 0.0033 21.2 6.3 52 141-195 65-116 (143)
55 2dak_A Ubiquitin carboxyl-term 37.8 51 0.0017 19.5 4.0 28 35-62 21-48 (63)
56 4dgh_A Sulfate permease family 36.8 95 0.0033 20.9 6.4 52 141-195 50-101 (130)
57 3ff5_A PEX14P, peroxisomal bio 35.8 65 0.0022 18.6 6.1 48 11-60 6-53 (54)
58 2kln_A Probable sulphate-trans 35.0 92 0.0032 20.9 5.6 52 140-195 48-100 (130)
59 2ooa_A E3 ubiquitin-protein li 34.9 66 0.0022 18.4 4.2 27 35-61 23-49 (52)
60 4dgf_A Sulfate transporter sul 34.1 1.1E+02 0.0037 20.8 6.2 53 140-195 52-104 (135)
61 1wiv_A UBP14, ubiquitin-specif 33.3 48 0.0016 20.4 3.4 26 35-60 41-66 (73)
62 3t6o_A Sulfate transporter/ant 33.3 1.1E+02 0.0036 20.3 6.4 53 140-195 48-101 (121)
63 3oeo_A Spheroplast protein Y; 31.1 71 0.0024 22.3 4.5 53 7-59 31-83 (138)
64 3l9f_A Putative uncharacterize 29.6 1E+02 0.0035 23.1 5.4 51 16-67 108-158 (204)
65 3sbx_A Putative uncharacterize 29.2 1.2E+02 0.004 22.5 5.6 62 157-223 122-188 (189)
66 3ncv_A DNA mismatch repair pro 28.7 51 0.0017 25.2 3.6 96 9-104 88-207 (220)
67 1th8_B Anti-sigma F factor ant 28.6 85 0.0029 20.3 4.5 51 142-195 45-95 (116)
68 3ct6_A PTS-dependent dihydroxy 28.3 1.5E+02 0.005 20.4 5.7 43 139-194 59-101 (131)
69 3lgb_A DNA primase large subun 27.7 81 0.0028 23.6 4.4 43 17-60 21-63 (194)
70 1ym0_B Fibrinotic enzyme compo 27.4 34 0.0012 16.0 1.4 13 231-243 7-19 (27)
71 2dae_A KIAA0733 protein; mitog 26.6 1.1E+02 0.0039 18.7 4.1 40 15-61 11-50 (75)
72 2oo3_A Protein involved in cat 25.5 25 0.00084 28.2 1.3 32 171-202 233-264 (283)
73 3mvn_A UDP-N-acetylmuramate:L- 23.7 1.3E+02 0.0045 21.2 5.0 29 139-173 35-63 (163)
74 3dct_B Nuclear receptor coacti 23.6 46 0.0016 14.8 1.4 14 35-48 3-16 (21)
75 3e7l_A Transcriptional regulat 23.5 89 0.003 18.1 3.3 23 36-58 20-42 (63)
76 4hb7_A Dihydropteroate synthas 23.2 2.1E+02 0.0072 22.6 6.3 76 96-176 124-202 (270)
77 3jr7_A Uncharacterized EGV fam 23.0 2.9E+02 0.0098 22.0 9.9 129 44-189 153-287 (298)
78 1h4x_A SPOIIAA, anti-sigma F f 22.7 99 0.0034 20.1 3.9 51 142-195 44-94 (117)
79 1whc_A RSGI RUH-027, UBA/UBX 3 21.8 1.3E+02 0.0046 17.7 4.0 27 35-61 21-48 (64)
80 3qua_A Putative uncharacterize 20.4 2.3E+02 0.0078 21.1 5.7 62 157-223 131-197 (199)
81 2dai_A Ubadc1, ubiquitin assoc 20.3 1.3E+02 0.0044 19.0 3.7 27 35-61 41-67 (83)
82 3u5c_A 40S ribosomal protein S 20.2 88 0.003 24.5 3.5 69 168-239 35-111 (252)
No 1
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=9.3e-51 Score=332.38 Aligned_cols=229 Identities=21% Similarity=0.337 Sum_probs=195.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhCC-C-CCCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcCC-CCCCCCCCchhhh
Q 043459 7 KSNIDEKEETKIRLMRALVEKQDP-S-SKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVP-NGSISLSEVPNEL 83 (243)
Q Consensus 7 ~~~l~~~~~~~l~~lr~~l~~~~~-~-~~~~~d~~llrfL~~~~~d~~~a~~~l~~~~~~R~~~~~-~~~~~~~~~~~~l 83 (243)
.++||+.++++|++||+++++..+ + +...+|.+|+|||||++||+++|.++++++++||+++.. ..-+.++++...+
T Consensus 1 ~~~ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 1 GSHMSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLL 80 (262)
T ss_dssp --------CTTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHH
Confidence 368999999999999999998742 3 346899999999999999999999999999999999731 1113445566777
Q ss_pred hcCCc-eeccCCCCCCcEEEEeCccccccccCCHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCCCc---cHHH
Q 043459 84 SQNKM-FMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNS---DLRA 159 (243)
Q Consensus 84 ~~~~~-~~~g~d~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~iI~D~~g~~~~~~---~~~~ 159 (243)
..|.. +++|+|++||||++++++++++++ .+.+++.++.++.+|.++...+.+..|+++|+|++|++++|+ +++.
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~-~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~ 159 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKV-FTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSV 159 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTT-SCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHH
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCccc-CCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHH
Confidence 78865 678999999999999999999988 789999999999999877655455689999999999999986 5789
Q ss_pred HHHHHHHHhhcccccccceEEEeCChHHHHHHHHHcccCChhhhhceEEecCcchHHHHHhcCCCCCCccccCCCCCCc
Q 043459 160 YLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLPLV 238 (243)
Q Consensus 160 ~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~ 238 (243)
++.++.++|++||+|++++||||+|++++++|++++|||+++|++||+++++ ++.++|.++|| ++||++|||+++..
T Consensus 160 ~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~-~~~~~L~~~i~-~~LP~~yGG~~~~~ 236 (262)
T 1r5l_A 160 AKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN-NYKQSLLQHFP-DILPLEYGGEEFSM 236 (262)
T ss_dssp HHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS-SCHHHHHHHST-TTSCGGGTCSSCCH
T ss_pred HHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCC-CcHHHHHHHhh-hhCcHhhCCCCCCH
Confidence 9999999999999999999999999999999999999999999999999975 66789999999 99999999998743
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.5e-49 Score=330.62 Aligned_cols=231 Identities=28% Similarity=0.428 Sum_probs=199.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcCCCCCCCCCC--chhhhh
Q 043459 7 KSNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSE--VPNELS 84 (243)
Q Consensus 7 ~~~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~~~~R~~~~~~~~~~~~~--~~~~l~ 84 (243)
..++|++++++|++||+|+++. +++...||.+|+|||||++||+++|.++|+++++||++++++.+....+ ..+.+.
T Consensus 23 ~~~l~~~q~~~l~~lr~~l~~~-~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~ 101 (296)
T 1aua_A 23 PGNLDSAQEKALAELRKLLEDA-GFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIA 101 (296)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHT-TCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHG
T ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHH
Confidence 3467999999999999999986 5667789999999999999999999999999999999987765422111 223333
Q ss_pred cCC-ceeccCCCCCCcEEEEeCcccccccc---CCHHHHHHHHHHHHHHHHhhC--------CCCCceEEEEEecCCCCC
Q 043459 85 QNK-MFMQGFDKKGRPIATVLGARHFQNKL---GGLEEFKRFVVYILDKICSRM--------PPGQEKFVVIGDLKGWGY 152 (243)
Q Consensus 85 ~~~-~~~~g~d~~Grpv~~~~~~~~~~~~~---~~~~~~~~~~~~~~E~~~~~~--------~~~~~~~~iI~D~~g~~~ 152 (243)
... .+++|+|++||||+++++++++++++ .+.+++++++++.+|.+++.. +..+.++++|+|++|+++
T Consensus 102 ~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~ 181 (296)
T 1aua_A 102 KFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISI 181 (296)
T ss_dssp GGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCH
T ss_pred HhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCH
Confidence 332 36889999999999999999887542 478999999999999876531 244689999999999999
Q ss_pred CCcc--HHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHcccCChhhhhceEEecCcchHHHHHhcCCCCCCccc
Q 043459 153 SNSD--LRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEI 230 (243)
Q Consensus 153 ~~~~--~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~LP~~ 230 (243)
++++ .+.++.++.++|++||+|++++||||+|++++++|+++||||+++|++||+|+++ ++.++|.++||+++||++
T Consensus 182 ~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~LP~~ 260 (296)
T 1aua_A 182 SSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS-SYQKELLKQIPAENLPVK 260 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS-CCHHHHTTTSCSSSSBGG
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCc-ccHHHHHhhCCHhhCcHH
Confidence 9986 6789999999999999999999999999999999999999999999999999986 567899999999999999
Q ss_pred cCCCCCCcc
Q 043459 231 YGGQLPLVP 239 (243)
Q Consensus 231 ~GG~~~~~~ 239 (243)
|||++++..
T Consensus 261 yGG~~~~~~ 269 (296)
T 1aua_A 261 FGGKSEVDE 269 (296)
T ss_dssp GTSCBCCCG
T ss_pred hCCCCCCCC
Confidence 999998876
No 3
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=3.2e-50 Score=336.68 Aligned_cols=224 Identities=24% Similarity=0.425 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHhhhCCC-----------CCCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcCCCCC--CCCCC
Q 043459 12 EKEETKIRLMRALVEKQDPS-----------SKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGS--ISLSE 78 (243)
Q Consensus 12 ~~~~~~l~~lr~~l~~~~~~-----------~~~~~d~~llrfL~~~~~d~~~a~~~l~~~~~~R~~~~~~~~--~~~~~ 78 (243)
+..+++|++||+||+++++. ..+.||.+|+||||+++||+++|.++|++|++||+++. ..+ +..++
T Consensus 56 ~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~-~~~~~~~~~~ 134 (316)
T 3hx3_A 56 ETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP-ELFDSLSPEA 134 (316)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG-GGTTTCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc-hhhcCCCHHH
Confidence 35678999999999998332 14689999999999999999999999999999999974 221 33445
Q ss_pred chhhhhcCCc-eeccCCCCCCcEEEEeCccccccccCCHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCCCc--
Q 043459 79 VPNELSQNKM-FMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNS-- 155 (243)
Q Consensus 79 ~~~~l~~~~~-~~~g~d~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~iI~D~~g~~~~~~-- 155 (243)
+...+..|.. +++|+|++||||++++++++++++ .+.+++++++++++|.++.....+++|+++|+|++|++++|+
T Consensus 135 i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~-~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~ 213 (316)
T 3hx3_A 135 VRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQE-ITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAAS 213 (316)
T ss_dssp HHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTT-SCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHH
T ss_pred HHHHHHcCCccccCCCCCCCCEEEEEecccCCCCC-CCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhcc
Confidence 6666778875 578999999999999999999998 899999999999999988765556789999999999999875
Q ss_pred -cHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHcccCChhhhhceEEecCcchHHHHHhcCCCCCCccccCCC
Q 043459 156 -DLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQ 234 (243)
Q Consensus 156 -~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~LP~~~GG~ 234 (243)
+++.++.++.++|++||+|++++||||+|+++.++|+++||||+++|++||.++++ ++ ++|.++||+++||++|||+
T Consensus 214 ~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~-~~-~~L~~~I~~~~LP~eyGG~ 291 (316)
T 3hx3_A 214 LRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD-DL-SGFYQEIDENILPSDFGGT 291 (316)
T ss_dssp CCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET-CC-HHHHHHSCGGGSBGGGTSS
T ss_pred CChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC-CH-HHHHhhCCHhhCcHhhCCC
Confidence 77899999999999999999999999999999999999999999999999999974 33 7999999999999999999
Q ss_pred CCCcc
Q 043459 235 LPLVP 239 (243)
Q Consensus 235 ~~~~~ 239 (243)
+++.+
T Consensus 292 ~~~~d 296 (316)
T 3hx3_A 292 LPKYD 296 (316)
T ss_dssp BCCCC
T ss_pred CCCcC
Confidence 98544
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=5.2e-50 Score=335.47 Aligned_cols=232 Identities=30% Similarity=0.446 Sum_probs=198.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcCCCCCCCCCCc-------
Q 043459 7 KSNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSEV------- 79 (243)
Q Consensus 7 ~~~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~~~~R~~~~~~~~~~~~~~------- 79 (243)
-++||++++++|++||+||++. +++...||.+|+|||||++||+++|.++|+++++||++++++.+....+.
T Consensus 32 ~~~lt~~q~~~l~~lR~~l~~~-~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~ 110 (320)
T 3q8g_A 32 PGNLTKEQEEALLQFRSILLEK-NYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDK 110 (320)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHT-TCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchh
Confidence 3678999999999999999997 56778999999999999999999999999999999999877653221111
Q ss_pred -hhhh-hcCCceeccCCCCCCcEEEEeCcccccccc---CCHHHHHHHHHHHHHHHHhh--------CCCCCceEEEEEe
Q 043459 80 -PNEL-SQNKMFMQGFDKKGRPIATVLGARHFQNKL---GGLEEFKRFVVYILDKICSR--------MPPGQEKFVVIGD 146 (243)
Q Consensus 80 -~~~l-~~~~~~~~g~d~~Grpv~~~~~~~~~~~~~---~~~~~~~~~~~~~~E~~~~~--------~~~~~~~~~iI~D 146 (243)
...+ +.+..+++|+|++||||+++++++++++++ .+.+++++++++.+|.++.. .+....++++|+|
T Consensus 111 e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD 190 (320)
T 3q8g_A 111 ERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLD 190 (320)
T ss_dssp HHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred HHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEE
Confidence 1122 233457899999999999999999987652 47889999999999987632 1234578999999
Q ss_pred cCCCCCCCcc--HHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHcccCChhhhhceEEecCcchHHHHHhcCCC
Q 043459 147 LKGWGYSNSD--LRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDE 224 (243)
Q Consensus 147 ~~g~~~~~~~--~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik~~l~~~~~~ki~~~~~~~~~~~L~~~i~~ 224 (243)
++|+++++++ .+.++.++.++|++||+|++++||||+|++++++|++++|||+++|++||+++++ ++.++|.++||+
T Consensus 191 ~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~ 269 (320)
T 3q8g_A 191 LKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS-SYKKELLKQIPI 269 (320)
T ss_dssp CTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT-THHHHHHHHSCG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC-CcHHHHHhhCCh
Confidence 9999999885 6788999999999999999999999999999999999999999999999999985 567899999999
Q ss_pred CCCccccCCCCCCccC
Q 043459 225 SQIPEIYGGQLPLVPI 240 (243)
Q Consensus 225 ~~LP~~~GG~~~~~~~ 240 (243)
++||++|||++++.+.
T Consensus 270 ~~LP~~yGG~~~~~~~ 285 (320)
T 3q8g_A 270 ENLPVKYGGTSVLHNP 285 (320)
T ss_dssp GGSBGGGTSCBCCSST
T ss_pred hhCChhhCCCCCCCCC
Confidence 9999999999998654
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.1e-48 Score=338.24 Aligned_cols=232 Identities=26% Similarity=0.400 Sum_probs=200.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcCCCCCCCCCCchhhhhc-
Q 043459 7 KSNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSEVPNELSQ- 85 (243)
Q Consensus 7 ~~~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~~~~R~~~~~~~~~~~~~~~~~l~~- 85 (243)
-++|+++++++|++||+|+++..++.+..+|.+|+|||||++||+++|.++|+++++||++++++.+.. ....+.+..
T Consensus 5 ~~~l~~~q~~~l~~lr~~l~~~~~~l~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~ 83 (403)
T 1olm_A 5 VGDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQY 83 (403)
T ss_dssp TTBCCHHHHHHHHHHHHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHh
Confidence 368999999999999999999755566799999999999999999999999999999999987765332 211222221
Q ss_pred CCceeccCCCCCCcEEEEeCcccccccc---CCHHHHHHHHHHHHHHHHhhCC-------CCCceEEEEEecCCCCCCCc
Q 043459 86 NKMFMQGFDKKGRPIATVLGARHFQNKL---GGLEEFKRFVVYILDKICSRMP-------PGQEKFVVIGDLKGWGYSNS 155 (243)
Q Consensus 86 ~~~~~~g~d~~Grpv~~~~~~~~~~~~~---~~~~~~~~~~~~~~E~~~~~~~-------~~~~~~~iI~D~~g~~~~~~ 155 (243)
...+++|+|++||||+++++++++++++ .+.+++++++++++|.++..+. .+..|+++|+|++|++++++
T Consensus 84 ~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~ 163 (403)
T 1olm_A 84 LSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHL 163 (403)
T ss_dssp CCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGG
T ss_pred CCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHH
Confidence 1234689999999999999999987631 6889999999999999887653 24689999999999999987
Q ss_pred ---cHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHcccCChhhhhceEEecCcchHHHHHhcCCCCCCccccC
Q 043459 156 ---DLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYG 232 (243)
Q Consensus 156 ---~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~LP~~~G 232 (243)
.++.++.++.++|++||+|++++||||+|+++.++|+++||||+++|++||+++++ ++.++|.++||+++||++||
T Consensus 164 ~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~~~LP~~yG 242 (403)
T 1olm_A 164 WKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYG 242 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGGGT
T ss_pred hhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcChhhCchhhC
Confidence 46789999999999999999999999999999999999999999999999999986 67789999999999999999
Q ss_pred CCCCCccC
Q 043459 233 GQLPLVPI 240 (243)
Q Consensus 233 G~~~~~~~ 240 (243)
|++++...
T Consensus 243 G~~~~~~~ 250 (403)
T 1olm_A 243 GTMTDPDG 250 (403)
T ss_dssp SSBCCTTC
T ss_pred CCcCCCCC
Confidence 99987543
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.58 E-value=2.6e-15 Score=121.06 Aligned_cols=140 Identities=16% Similarity=0.183 Sum_probs=116.2
Q ss_pred CchhhhhcCCceeccCCCCCCcEEEEeCccccccccCCHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCCCc-c
Q 043459 78 EVPNELSQNKMFMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNS-D 156 (243)
Q Consensus 78 ~~~~~l~~~~~~~~g~d~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~iI~D~~g~~~~~~-~ 156 (243)
++.+.-+.+.+|..|.|++||||+++..+++.... .+.+.++.+++..++.... +.+.+|+|++|.+..+. +
T Consensus 3 d~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~-~D~e~Ll~~vl~tl~~~~~------~~y~lV~d~T~~~~~n~p~ 75 (256)
T 3pg7_A 3 EFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQ-INGDLLIYHVLLTLKPYYA------KPYEIVVDLTHTGPSNRFK 75 (256)
T ss_dssp TTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTT-BCHHHHHHHHHHHHTTTTT------SCEEEEEECTTCCGGGCCC
T ss_pred chhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCC-CCHHHHHHHHHHHHHHhcC------CCeEEEEECCCCCcccCCc
Confidence 34444455677888999999999999999998877 7888888888877775443 47999999999998765 6
Q ss_pred HHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHH-HcccCChhhhhceEEecCcchHHHHHhcCCCCCC
Q 043459 157 LRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKI-VYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQI 227 (243)
Q Consensus 157 ~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~-ik~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~L 227 (243)
.++++.+.+++...|..+++++||+||+++++..++. .+++.+.+..+|+.++++. ++|.++|+.++|
T Consensus 76 ~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl---~eL~~~i~~~~L 144 (256)
T 3pg7_A 76 TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP---GKLAEHIEHEQQ 144 (256)
T ss_dssp HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESST---TGGGGTSCGGGC
T ss_pred HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCH---HHHHhhcCHHHc
Confidence 8899999999999999999999999999999876665 4666677888999999864 799999987655
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.46 E-value=5.4e-14 Score=114.99 Aligned_cols=131 Identities=16% Similarity=0.189 Sum_probs=102.8
Q ss_pred CCceeccCCCCCCcEEEEeCccccccccCCHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCCCc-cHHHHHHHH
Q 043459 86 NKMFMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNS-DLRAYLGAL 164 (243)
Q Consensus 86 ~~~~~~g~d~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~iI~D~~g~~~~~~-~~~~~k~~~ 164 (243)
+.+|-.|.|++|+||+++.+++++... .+.+.++.+++..++.... +.+.+|+|+++.+..+- +.++++.+.
T Consensus 30 ~~f~~~g~d~dG~PViv~~~~~~~~~~-~D~e~Lly~il~tl~~~~~------~~y~lV~D~T~~~~~n~p~~~~l~~~~ 102 (290)
T 3peg_A 30 SIFYQAGTSKAGNPIFYYVARRFKTGQ-INGDLLIYHVLLTLKPYYA------KPYEIVVDLTHTGPSNRFKTDFLSKWF 102 (290)
T ss_dssp TTEEEEEECTTSCEEEEEEGGGCCBTT-BCHHHHHHHHHHHHTTTTT------SCEEEEEECTTCCGGGCCCHHHHGGGG
T ss_pred CeEEEeccCCCCCEEEEEEeecCCccC-CCHHHHHHHHHHHHHHhcC------CCeEEEEEcCCCCccCCChHHHHHHHH
Confidence 455666899999999999999998877 7888888777777775443 47999999999998764 688999999
Q ss_pred HHHhhcccccccceEEEeCChHHHHHH-HHHcccCChhhhhceEEecCcchHHHHHhcCCCCC
Q 043459 165 SILQDYYPERLGKLFIVHAPYIFMTVW-KIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQ 226 (243)
Q Consensus 165 ~~~~~~yP~rl~~i~ivn~p~~~~~~~-~~ik~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~ 226 (243)
+++...|+.+++++||+||+.+++..+ ...+++.+.+..+|+.+++.. .+|.+++++++
T Consensus 103 ~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~---~~L~~~i~~~~ 162 (290)
T 3peg_A 103 VVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP---GKLAEHIEHEQ 162 (290)
T ss_dssp TSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS---CC---------
T ss_pred HHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH---HHHHhhCCHHH
Confidence 999999999999999999999988755 567778888889999988764 35888887653
No 8
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.67 E-value=0.42 Score=29.53 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHH
Q 043459 8 SNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFL 59 (243)
Q Consensus 8 ~~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~ 59 (243)
..|+.++++++.+|...-.- .+......||..++||++.|+..+-
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg~-------~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTGI-------ESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHCC-------SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHhCC-------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 47899999999999987641 2677889999999999999987754
No 9
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=90.72 E-value=0.43 Score=30.58 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=37.7
Q ss_pred CCCCCHHHHH----HHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 7 KSNIDEKEET----KIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 7 ~~~l~~~~~~----~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
...||+.+++ +|.++|+.+.. ...+..|.+-...++||+++|...+-+-
T Consensus 23 ~~~Ls~~d~arL~SCLd~iR~VlGd------sV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 23 NHQLSEIDQARLYSCLDHMREVLGD------AVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHTTT------TSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHcc------cCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 4458887776 55666666544 3688999999999999999999987654
No 10
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.48 E-value=0.81 Score=27.70 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHH
Q 043459 8 SNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMF 58 (243)
Q Consensus 8 ~~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l 58 (243)
..+++..++.+.+|...-. .++.....||.+++||++.|+..+
T Consensus 9 ~~~s~~~~e~i~qF~~iTg--------~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 9 SAASSALKGLIQQFTTITG--------ASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CSSCHHHHHHHHHHHHHTC--------CCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred hhcCccHHHHHHHHHHHhC--------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567888888888887532 358889999999999999998775
No 11
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=90.38 E-value=0.57 Score=28.09 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 15 ETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 15 ~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
++++++|++.. | ..+...+..-|+++++|++.|...|-+.
T Consensus 10 ee~l~~L~emF----P---~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 10 EEDLKAIQDMF----P---NMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHHC----S---SSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHC----C---CCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 46677777765 3 2799999999999999999999998653
No 12
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.61 E-value=1.4 Score=27.17 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 13 KEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 13 ~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
+.++++++|++.. |. .+...+..-|+++++|++.|.+.|-+.
T Consensus 17 ~~~~~v~~L~~MF----P~---lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 17 EFNQAMDDFKTMF----PN---MDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CSHHHHHHHHHHC----SS---SCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC----CC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4466778888875 32 789999999999999999999998765
No 13
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=86.47 E-value=2 Score=26.68 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 043459 13 KEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLK 60 (243)
Q Consensus 13 ~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~ 60 (243)
+-...+.++++.+ |++.+.++.+.|..++.|+|++...|-.
T Consensus 12 ~l~s~I~qV~DLf-------PdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 12 ELDSLISQVKDLL-------PDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHC-------CSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-------ccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 4445566666654 3489999999999999999999998754
No 14
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=85.03 E-value=2 Score=23.93 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHH
Q 043459 14 EETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMF 58 (243)
Q Consensus 14 ~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l 58 (243)
+++.+.++...-. .++.....||.+++||++.|+..+
T Consensus 5 ~~~~i~~F~~iTg--------~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVTG--------AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHTC--------CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHhC--------cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5566777776421 368889999999999999998765
No 15
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=84.70 E-value=1.4 Score=25.27 Aligned_cols=41 Identities=22% Similarity=0.469 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 14 EETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 14 ~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
....++.|.+.. |. .+...+.+-|..+++|+++|.+.|-+.
T Consensus 4 ~e~~v~~L~EMF----P~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMF----PA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHC----SS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHC----CC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 356677777765 33 678889999999999999999998664
No 16
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=84.09 E-value=1.9 Score=23.09 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHH
Q 043459 13 KEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMF 58 (243)
Q Consensus 13 ~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l 58 (243)
+..++|++|.+. ..+.....+-|+++++|+++|...|
T Consensus 3 ~~~~~i~~L~~m---------Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 3 GLNSKIAQLVSM---------GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHT---------TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHc---------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345566666653 1466777889999999999998764
No 17
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=82.36 E-value=1.5 Score=24.62 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCCh-HHHHHHHHhcCCCHHHHHHH
Q 043459 13 KEETKIRLMRALVEKQDPSSKEVDD-PTLRRFLRARDLDVEKASGM 57 (243)
Q Consensus 13 ~~~~~l~~lr~~l~~~~~~~~~~~d-~~llrfL~~~~~d~~~a~~~ 57 (243)
++.+.|++|.+.-. .+| .....||.+++||++.|+..
T Consensus 4 d~de~ia~F~~iTG--------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 4 DREMILADFQACTG--------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp CHHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred cHHHHHHHHHHHHC--------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 35667777777432 345 78899999999999999754
No 18
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=79.77 E-value=7.4 Score=23.12 Aligned_cols=47 Identities=6% Similarity=0.163 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043459 9 NIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLK 63 (243)
Q Consensus 9 ~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~~~ 63 (243)
-||+++++-+.+|...- .++-.+-.++|...+||.++|.+.+....+
T Consensus 2 ~ls~~q~~mv~~~s~~T--------gmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 2 TLSPEQQEMLQAFSTQS--------GMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp CCCHHHHHHHHHHHHHH--------CCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--------CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 36887777777776642 268899999999999999999998876543
No 19
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=78.48 E-value=6.2 Score=22.70 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.6
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHH
Q 043459 35 VDDPTLRRFLRARDLDVEKASGMFL 59 (243)
Q Consensus 35 ~~d~~llrfL~~~~~d~~~a~~~l~ 59 (243)
.+..+|-|.|.+.++|+.+|.+.|.
T Consensus 24 negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 24 DEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp CTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred ccccHHHHHHHHccCCHHHHHHHhh
Confidence 5778999999999999999998875
No 20
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=77.36 E-value=8.8 Score=22.63 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 043459 9 NIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLK 60 (243)
Q Consensus 9 ~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~ 60 (243)
.|++.+++-+.+|...- .++-.+-..+|...+||.++|...+..
T Consensus 1 ~l~~~q~~mv~~~s~~T--------~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 1 RLNPVQLELLNKLHLET--------KLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CCCHHHHHHHHHHHHHH--------CSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--------CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 36788887777776642 268899999999999999999999877
No 21
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=76.87 E-value=9.6 Score=22.81 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 9 NIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 9 ~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
-|++.|+++|..|-..= .++....+=|++.+.|+|+|++=|-.+
T Consensus 14 ~ls~se~e~V~~LvsMG---------Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 14 MLSPSERQCVETVVNMG---------YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp TCCHHHHHHHHHHHHHH---------CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhCcchHHHHHHHHHcC---------CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 47888888988887652 688899999999999999998765443
No 22
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=74.49 E-value=14 Score=25.45 Aligned_cols=82 Identities=11% Similarity=0.119 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCCCccHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHH
Q 043459 114 GGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKI 193 (243)
Q Consensus 114 ~~~~~~~~~~~~~~E~~~~~~~~~~~~~~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ 193 (243)
.+.+++.. +.-.+|..+... ....+.+++|++. +..++++.+-.=++.--.+ -..+.++=||-.+.|.+.+.++
T Consensus 30 lt~~d~~~-l~~~l~~~l~~~--~~~~i~ll~~~~~--f~G~~~~a~~~d~k~~~~h-~~~~~RiAvV~d~~W~~~~~~~ 103 (126)
T 2q3l_A 30 LTHEDYEQ-MTPLLESALAGI--KTPEIVALIDITE--LDGLSLHAAWDDLKLGLKH-GKEFKRVAIIGQGELQEWATRV 103 (126)
T ss_dssp ECHHHHHH-HHHHHHHHTTTC--CSSCEEEEEEEEE--EEEECHHHHHHHHHHHHHH-GGGEEEEEEECCSHHHHHHHHH
T ss_pred ECHHHHHH-HHHHHHHHHHhC--CCceEEEEEEecC--CCCCCHHHHHHHHHhhhhH-HhcCCEEEEEcChHHHHHHHHH
Confidence 34556665 666777655542 2223777777653 3344455444433322233 4788999999999999999999
Q ss_pred HcccCChh
Q 043459 194 VYPFIDNN 201 (243)
Q Consensus 194 ik~~l~~~ 201 (243)
.++|++.+
T Consensus 104 ~~~~~~~e 111 (126)
T 2q3l_A 104 ANWFTPGE 111 (126)
T ss_dssp HHHHCSSE
T ss_pred HhhccCCc
Confidence 99997764
No 23
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=72.12 E-value=6.4 Score=26.63 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=40.6
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 4 EYMKSNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 4 ~~~~~~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
+|..-.||+++++.++.|++.-....+.+....-.-+...+.+.+||-.++.+.+...
T Consensus 12 ~~~~L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~Li~ad~FDEaaar~l~~~~ 69 (108)
T 3o39_A 12 SFKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIASDTFDKAKAEAQIAKM 69 (108)
T ss_dssp -CCCSCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHHHSSSSCCHHHHHHHHHHT
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 5788899999999999999987664332221223346667778889988777776544
No 24
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.63 E-value=12 Score=22.73 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHH
Q 043459 16 TKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMF 58 (243)
Q Consensus 16 ~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l 58 (243)
+.+.+|...-. .++.....||.+.+||++.|...+
T Consensus 19 ~~i~qF~~iTg--------~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 19 VMINQFVLAAG--------CAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHHHHHHC--------CCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHcC--------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56777776431 378889999999999999998775
No 25
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=65.78 E-value=8.3 Score=21.56 Aligned_cols=25 Identities=24% Similarity=0.064 Sum_probs=20.9
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHH
Q 043459 35 VDDPTLRRFLRARDLDVEKASGMFL 59 (243)
Q Consensus 35 ~~d~~llrfL~~~~~d~~~a~~~l~ 59 (243)
.++.-..+=|+++++|+++|++.|-
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3556679999999999999998764
No 26
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=64.62 E-value=12 Score=21.74 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 15 ETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 15 ~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
+++|++|++. . ..++.-.++-|+++++|+++|++.|-..
T Consensus 10 ~~~l~~L~~M----G----F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSM----G----FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHH----T----CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc----C----CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566777665 1 1244556999999999999999988754
No 27
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=63.84 E-value=9.3 Score=22.60 Aligned_cols=38 Identities=21% Similarity=0.159 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 043459 15 ETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLK 60 (243)
Q Consensus 15 ~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~ 60 (243)
+++|++|++. . ..++...++-|+++++|+++|++.|-.
T Consensus 18 ~~qi~~L~~M----G----F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM----G----FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH----T----CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc----C----CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4466666654 1 135667799999999999999998764
No 28
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=62.86 E-value=18 Score=20.34 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 043459 12 EKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLK 60 (243)
Q Consensus 12 ~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~ 60 (243)
+...++|++|.++ . .+.....+=|+++++|+++|.+.|-.
T Consensus 6 ~~~~~~i~~L~~M-----G----F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 6 SEYETMLTEIMSM-----G----YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHHT-----T----CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHc-----C----CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4455666666654 1 57888899999999999999987754
No 29
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=60.50 E-value=15 Score=22.50 Aligned_cols=39 Identities=18% Similarity=0.054 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 15 ETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 15 ~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
+.+|++|++. - ..++.--++-|++.++|+++|++.|.+.
T Consensus 20 ~~ql~qL~~M-----G---F~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 20 SKEMECLQAM-----G---FVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHHHH-----T---CCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHc-----C---CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4466666664 1 2455566999999999999999988664
No 30
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=55.17 E-value=16 Score=22.77 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 043459 15 ETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLK 60 (243)
Q Consensus 15 ~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~ 60 (243)
+++|++|+++ . ..++.-.++-|++.++|+++|++.|-.
T Consensus 30 e~qi~qL~eM----G----F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL----G----FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH----T----CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc----C----CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4566776665 1 135677799999999999999998754
No 31
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=53.98 E-value=55 Score=23.24 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=40.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 043459 5 YMKSNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLK 63 (243)
Q Consensus 5 ~~~~~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~~~ 63 (243)
|-.-.||+++++.|+.|++.-.............-+...+.+.+||-.++.+.+.....
T Consensus 41 ~~~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~ad~fDeaa~ral~~~~~~ 99 (145)
T 3itf_A 41 FDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQAEKMAN 99 (145)
T ss_dssp TTTCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 44668999999999999988776533222122334666777888998887777765543
No 32
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=53.92 E-value=17 Score=20.82 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHH
Q 043459 15 ETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFL 59 (243)
Q Consensus 15 ~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~ 59 (243)
+.+|++|++. - ..++.-..+=|+++++|+++|++.|.
T Consensus 13 ~~~l~~L~~M-----G---F~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 13 QQQLEQLSAM-----G---FLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHHHT-----T---CCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHc-----C---CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3556666553 1 12677789999999999999998764
No 33
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=53.82 E-value=29 Score=19.84 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=22.1
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHH
Q 043459 36 DDPTLRRFLRARDLDVEKASGMFLK 60 (243)
Q Consensus 36 ~d~~llrfL~~~~~d~~~a~~~l~~ 60 (243)
++....+-|+++++|+++|++.|..
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7778899999999999999998764
No 34
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=53.57 E-value=8.5 Score=22.43 Aligned_cols=40 Identities=10% Similarity=0.263 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHH
Q 043459 13 KEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFL 59 (243)
Q Consensus 13 ~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~ 59 (243)
+.++.+++|++.. | ..|...+-.-|++++++++.|+..+-
T Consensus 11 e~~~~~~~L~~MF----P---~lD~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 11 ERKDTLNTLQNMF----P---DMDPSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHHHS----T---TSCHHHHHHHHHHSCC--CGGGC---
T ss_pred HHHHHHHHHHHHc----c---cCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4455666666665 3 37999999999999999998877654
No 35
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=53.56 E-value=18 Score=28.80 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=33.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 6 MKSNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 6 ~~~~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
+..-+...+++.++++...-. .++....+||.+++||++.|...+-..
T Consensus 7 ~~~~l~~~~~~~i~qF~~iTg--------~~~~~A~~~L~~~~WdLe~Al~~ff~~ 54 (270)
T 3bq3_A 7 IKRKDASPEQEAIESFTSLTK--------CDPKVSRKYLQRNHWNINYALNDYYDK 54 (270)
T ss_dssp ------CHHHHHHHHHHHHHC--------CCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred hHhhhccchHHHHHHHHHHcC--------CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 445566667777888877643 378889999999999999999886433
No 36
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.78 E-value=38 Score=22.58 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=21.5
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 35 VDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 35 ~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
.++.....-|..++||+++|...|..-
T Consensus 52 ~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 52 KNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 567778888888899999988877543
No 37
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.37 E-value=29 Score=20.15 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 17 KIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 17 ~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
.|++|++. -..|...=.+-|+.+++|+++|++.|.+.
T Consensus 12 ~L~~L~eM--------GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 12 LMAHLFEM--------GFCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp HHHHHHHH--------TCCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHc--------CCCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 56666664 12577888999999999999999887653
No 38
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=49.31 E-value=9.8 Score=28.14 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCC---CCChHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhc
Q 043459 8 SNIDEKEETKIRLMRALVEKQDPSSK---EVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTF 68 (243)
Q Consensus 8 ~~l~~~~~~~l~~lr~~l~~~~~~~~---~~~d~~llrfL~~~~~d~~~a~~~l~~~~~~R~~~ 68 (243)
..||++++++++++++...+...... ......|..-+.+.++|.+++.+...+-.+.|.+.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57999999999999887665311100 12234466677788899999998888887777664
No 39
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=49.19 E-value=21 Score=24.08 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.5
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHH
Q 043459 35 VDDPTLRRFLRARDLDVEKASGMFLK 60 (243)
Q Consensus 35 ~~d~~llrfL~~~~~d~~~a~~~l~~ 60 (243)
.++...++=|+++++|+++|++.|.+
T Consensus 79 ~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 79 QDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35678899999999999999998864
No 40
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.24 E-value=30 Score=20.66 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=22.1
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 35 VDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 35 ~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
.+.....+=|+++++|+++|.+.|..+
T Consensus 21 F~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 21 FSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 566777888999999999999887655
No 41
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=47.35 E-value=60 Score=21.83 Aligned_cols=52 Identities=13% Similarity=-0.031 Sum_probs=34.7
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHc
Q 043459 141 FVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVY 195 (243)
Q Consensus 141 ~~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik 195 (243)
-.+|+|+++++. +|...+..+..+.+. .-.+-..+.++|++.-+.-++.+..
T Consensus 53 ~~vvlDls~V~~--iDSsGl~~L~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~g 104 (125)
T 2ka5_A 53 NKIFLVLSDVES--IDSFSLGVIVNILKS-ISSSGGFFALVSPNEKVERVLSLTN 104 (125)
T ss_dssp CEEEEECTTCSC--CCHHHHHHHHHHHHH-HHHHTCEEEEECCCHHHHHHHHHTT
T ss_pred CEEEEECCCCCE--EcHHHHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHcC
Confidence 468999999664 554444444433332 2344578999999998888887765
No 42
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=47.28 E-value=33 Score=25.59 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHHhhhCCC--------------C---CCCChH-H---HHHHHHhcC-CCHHHHHHHHHHHHHHhh
Q 043459 9 NIDEKEETKIRLMRALVEKQDPS--------------S---KEVDDP-T---LRRFLRARD-LDVEKASGMFLKYLKWRQ 66 (243)
Q Consensus 9 ~l~~~~~~~l~~lr~~l~~~~~~--------------~---~~~~d~-~---llrfL~~~~-~d~~~a~~~l~~~~~~R~ 66 (243)
+||+.+...+.+.++.+++..-. | ...+.. . ++..|...+ -+.++..+.+....+-|.
T Consensus 66 ~ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~~~~~~~~~~~~~~~~ACr~ 145 (197)
T 3kdg_A 66 HYSTNEALIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKNIDIKKLREEAAIMMSCKG 145 (197)
T ss_dssp ECCTTHHHHHHHTHHHHHHTTCCCEECSTTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHHHHHhCCCEEEECCCCEEEEEecCcccccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhHh
Confidence 46888999999999999885311 1 122322 2 333443333 355565666666666676
Q ss_pred hcCCCCCCCCCCchhhhhcCC-ceeccCCCCCCcEEEEe
Q 043459 67 TFVPNGSISLSEVPNELSQNK-MFMQGFDKKGRPIATVL 104 (243)
Q Consensus 67 ~~~~~~~~~~~~~~~~l~~~~-~~~~g~d~~Grpv~~~~ 104 (243)
+......++.+++...++.-. .-.+..++.|||+++--
T Consensus 146 AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l 184 (197)
T 3kdg_A 146 SIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHH 184 (197)
T ss_dssp ----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEE
T ss_pred hccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEEe
Confidence 654333355555554444322 12456789999988763
No 43
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=46.90 E-value=45 Score=20.06 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 16 TKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 16 ~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
+.|.+||+.... .-...-.-|..+++|+++|...|+.-
T Consensus 11 ~~Vk~LRe~TGa--------g~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 11 ELLMKLRRKTGY--------SFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHHCC--------CHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 567788887533 23345577889999999999999865
No 44
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=45.35 E-value=44 Score=20.85 Aligned_cols=44 Identities=18% Similarity=0.449 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHH-HHHHHHHHH
Q 043459 17 KIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVE-KASGMFLKY 61 (243)
Q Consensus 17 ~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~-~a~~~l~~~ 61 (243)
.-+.+++.+++.++. ..++|.-+..-|...+.++. +++.+++..
T Consensus 21 Ik~~Ik~lI~~Ed~~-kPlSD~~I~~~L~~~Gi~IaRRTVaKYRe~ 65 (76)
T 2ahq_A 21 LMKLIKEIVENEDKR-KPYSDQEIANILKEKGFKVARRTVAKYREM 65 (76)
T ss_dssp HHHHHHHHGGGCCSS-SCCCHHHHHHHHTTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-CCCCHHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 444566667665433 44899999999999998876 466665544
No 45
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=44.97 E-value=29 Score=18.70 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.4
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHH
Q 043459 35 VDDPTLRRFLRARDLDVEKASGMFL 59 (243)
Q Consensus 35 ~~d~~llrfL~~~~~d~~~a~~~l~ 59 (243)
.+.....+=|+.+++|+++|.+-|-
T Consensus 16 F~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 16 FTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4667778889999999999987764
No 46
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=44.19 E-value=61 Score=20.77 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=33.5
Q ss_pred EEEEecCCCCCCCccHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHc
Q 043459 142 VVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVY 195 (243)
Q Consensus 142 ~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik 195 (243)
.+|+|+++++. +|...+..+...... ...+-..+.+.|++.-+.-++....
T Consensus 46 ~vvlDls~v~~--iDssgl~~L~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~g 96 (110)
T 1sbo_A 46 KIVLDLSSVSY--MDSAGLGTLVVILKD-AKINGKEFILSSLKESISRILKLTH 96 (110)
T ss_dssp EEEEECTTCCC--BCHHHHHHHHHHHHH-HHHTTCEEEEESCCHHHHHHHHHTT
T ss_pred EEEEECCCCcE--EccHHHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHhC
Confidence 57999999654 555544444443332 2334567899999988877777654
No 47
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=43.92 E-value=36 Score=21.67 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 15 ETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 15 ~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
+++|++|.+. - .+.....+-|+++++|+++|.+.|-.+
T Consensus 30 ee~I~~Lv~M-----G----F~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 30 QESINQLVYM-----G----FDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHHHHH-----S----CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----C----CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3455555554 1 577888889999999999998887765
No 48
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=43.17 E-value=28 Score=21.59 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=20.8
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHH
Q 043459 35 VDDPTLRRFLRARDLDVEKASGMFLK 60 (243)
Q Consensus 35 ~~d~~llrfL~~~~~d~~~a~~~l~~ 60 (243)
.+.....+=|+.+++|+++|.+.|..
T Consensus 41 F~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 41 FDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 57777888888898999988877653
No 49
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=42.37 E-value=63 Score=21.54 Aligned_cols=51 Identities=12% Similarity=-0.000 Sum_probs=37.7
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHc
Q 043459 141 FVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVY 195 (243)
Q Consensus 141 ~~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik 195 (243)
-.+|+|+++++ .+|.+.+..+..+.+. +.. -..+++.+++.-+.-++....
T Consensus 47 ~~vilDl~~v~--~iDssgl~~L~~~~~~-~~~-g~~l~l~~~~~~v~~~l~~~g 97 (118)
T 3ny7_A 47 RIVILKWDAVP--VLDAGGLDAFQRFVKR-LPE-GCELRVCNVEFQPLRTMARAG 97 (118)
T ss_dssp SEEEEEEEECC--CBCHHHHHHHHHHHHH-CCT-TCEEEEECCCHHHHHHHHHTT
T ss_pred cEEEEEcCCCC--eecHHHHHHHHHHHHH-HHC-CCEEEEecCCHHHHHHHHHcC
Confidence 46999999955 5677777766666554 445 778999999988877777654
No 50
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.23 E-value=60 Score=20.13 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 043459 14 EETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLK 60 (243)
Q Consensus 14 ~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~ 60 (243)
.+-.|++||+.-.- .|-.+|..-|.+.++|+..|+..|-.
T Consensus 24 ~q~lLnQLrEITGi-------qD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 24 QQTFLNQLREITGI-------NDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHHSCC-------CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-------CcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 34467788775322 57889999999999999999988643
No 51
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=39.97 E-value=86 Score=21.31 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 043459 8 SNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKW 64 (243)
Q Consensus 8 ~~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~~~~ 64 (243)
+-||+.+++.|.+|-+. . ....-..|=|+.++.|+++|.+-|..|...
T Consensus 2 ~~l~~~e~~~v~~l~~M-----G----Fp~~~~~kAl~~~g~~~e~amewL~~h~~L 49 (118)
T 4ae4_A 2 SHMSPSERQCVETVVNM-----G----YSYECVLRAMKAAGANIEQILDYLFAHGQL 49 (118)
T ss_dssp CCSCHHHHHHHHHHHHT-----T----CCHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-----C----CCHHHHHHHHHHHCcCHHHHHHHHHHhchh
Confidence 56899999999998875 2 466777888888888999999988887543
No 52
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.60 E-value=57 Score=18.80 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=24.0
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 35 VDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 35 ~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
.+.....+=|...++|++.|...|+.+
T Consensus 21 F~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 21 YSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 678888999999999999999998865
No 53
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=38.53 E-value=82 Score=20.61 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=35.4
Q ss_pred EEEEecCCCCCCCccHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHc
Q 043459 142 VVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVY 195 (243)
Q Consensus 142 ~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik 195 (243)
.+|+|+++++ .+|...+..++.+.+. .-.+-..+.++|++.-+.-++.+..
T Consensus 44 ~vvlDls~v~--~iDssgl~~L~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~g 94 (117)
T 4hyl_A 44 KMILDLREVS--YMSSAGLRVLLSLYRH-TSNQQGALVLVGVSEEIRDTMEITG 94 (117)
T ss_dssp EEEEEEEEEE--EECHHHHHHHHHHHHH-HHHTTCEEEEECCCHHHHHHHHHHT
T ss_pred eEEEECCCCc--EEcHHHHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHhC
Confidence 8999999955 4555544444443332 2345678999999998888888765
No 54
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=37.92 E-value=96 Score=21.22 Aligned_cols=52 Identities=12% Similarity=-0.033 Sum_probs=35.6
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHc
Q 043459 141 FVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVY 195 (243)
Q Consensus 141 ~~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik 195 (243)
-.+|+|+++++ .+|.+.+..+..+. ..+-.+-..+++.|++.-+.-++....
T Consensus 65 ~~vvlDls~v~--~iDssgl~~L~~~~-~~~~~~g~~l~l~~~~~~v~~~l~~~g 116 (143)
T 3llo_A 65 HTVILDFTQVN--FMDSVGVKTLAGIV-KEYGDVGIYVYLAGCSAQVVNDLTSNR 116 (143)
T ss_dssp SEEEEECTTCC--CCCHHHHHHHHHHH-HHHHTTTCEEEEESCCHHHHHHHHHTT
T ss_pred eEEEEECCCCc--cccHHHHHHHHHHH-HHHHHCCCEEEEEeCCHHHHHHHHhCC
Confidence 46999999965 45655555444433 334456779999999988877776654
No 55
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.76 E-value=51 Score=19.51 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=22.6
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043459 35 VDDPTLRRFLRARDLDVEKASGMFLKYL 62 (243)
Q Consensus 35 ~~d~~llrfL~~~~~d~~~a~~~l~~~~ 62 (243)
.+.....+=|+++++|+++|.+-|-.+.
T Consensus 21 F~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 21 FSRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp CCHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4667778888999999999998887764
No 56
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=36.81 E-value=95 Score=20.87 Aligned_cols=52 Identities=15% Similarity=0.032 Sum_probs=35.3
Q ss_pred EEEEEecCCCCCCCccHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHc
Q 043459 141 FVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVY 195 (243)
Q Consensus 141 ~~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik 195 (243)
-.+|+|+++++. +|.+.+..+..+. ..+-.+-.++++.+++.-+.-++....
T Consensus 50 ~~vvlDls~v~~--iDssgl~~L~~~~-~~~~~~g~~l~l~~~~~~v~~~l~~~g 101 (130)
T 4dgh_A 50 QILILRLKWVPF--MDITGIQTLEEMI-QSFHKRGIKVLISGANSRVSQKLVKAG 101 (130)
T ss_dssp SEEEEECTTCCC--CCHHHHHHHHHHH-HHHHTTTCEEEEECCCHHHHHHHHHTT
T ss_pred CEEEEECCCCCc--ccHHHHHHHHHHH-HHHHHCCCEEEEEcCCHHHHHHHHHcC
Confidence 469999999664 5555554444433 234456788999999988877766543
No 57
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=35.83 E-value=65 Score=18.65 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 043459 11 DEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLK 60 (243)
Q Consensus 11 ~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~ 60 (243)
++.+++.++.=+.-|+. |......-.--..||.+.+..-++..+++++
T Consensus 6 ~~~Re~li~~Av~FL~d--p~V~~sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 6 PEFREPLIATAVKFLQN--SRVRQSPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHC--TTGGGSCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCC--hhhhcCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45667777777787766 7777777888999999999998887777654
No 58
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=35.02 E-value=92 Score=20.94 Aligned_cols=52 Identities=8% Similarity=-0.181 Sum_probs=34.9
Q ss_pred eEEEEEecCCCCCCCc-cHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHc
Q 043459 140 KFVVIGDLKGWGYSNS-DLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVY 195 (243)
Q Consensus 140 ~~~iI~D~~g~~~~~~-~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik 195 (243)
.-.+|+|+++++.-+. .+..+..+.+.++ .+-..+.+.|++.-+.-++....
T Consensus 48 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 100 (130)
T 2kln_A 48 VEWFVLNAESNVEVDLTALDALDQLRTELL----RRGIVFAMARVKQDLRESLRAAS 100 (130)
T ss_dssp CEEEEEECSCCSSSBCSTTTHHHHHHHHHH----TTTEEEEEECCSSHHHHHHHHCT
T ss_pred ceEEEEECCCCChhhHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHHcC
Confidence 3479999999775443 3555555555444 35667899999887776666543
No 59
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=34.86 E-value=66 Score=18.44 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=24.0
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 35 VDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 35 ~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
.+.....+=|+..++|++.|...|..+
T Consensus 23 Fsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 23 YAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 688889999999999999999988775
No 60
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=34.13 E-value=1.1e+02 Score=20.77 Aligned_cols=53 Identities=9% Similarity=-0.063 Sum_probs=35.7
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHc
Q 043459 140 KFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVY 195 (243)
Q Consensus 140 ~~~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik 195 (243)
.-.+|+|+++++. +|.+.+..+..+.+ .+-.+-.++++.+++.-+.-++....
T Consensus 52 ~~~vvlDls~v~~--iDssgl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~g 104 (135)
T 4dgf_A 52 PKVFILRMRRVPV--IDATGMHALWEFQE-SCEKRGTILLLSGVSDRLYGALNRFG 104 (135)
T ss_dssp CSEEEEECTTCSC--BCHHHHHHHHHHHH-HHHHHTCEEEEESCCHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCc--cCHHHHHHHHHHHH-HHHHCCCEEEEEcCCHHHHHHHHHcC
Confidence 3579999999664 55554444444332 34456779999999988777766553
No 61
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.27 E-value=48 Score=20.41 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=19.6
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHH
Q 043459 35 VDDPTLRRFLRARDLDVEKASGMFLK 60 (243)
Q Consensus 35 ~~d~~llrfL~~~~~d~~~a~~~l~~ 60 (243)
.+.....+=|+++++|+++|++-|-.
T Consensus 41 F~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 41 FAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 46677778888888888888876654
No 62
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=33.26 E-value=1.1e+02 Score=20.32 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=35.2
Q ss_pred eEEEEEecCCCCCCCccHHHHHHHHHHHhhcccc-cccceEEEeCChHHHHHHHHHc
Q 043459 140 KFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPE-RLGKLFIVHAPYIFMTVWKIVY 195 (243)
Q Consensus 140 ~~~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~-rl~~i~ivn~p~~~~~~~~~ik 195 (243)
.-.+|+|+++++. +|..-+..+...... .-. +-..+.++|++.-+.-++.+..
T Consensus 48 ~~~vvlDls~v~~--iDSsGl~~L~~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~g 101 (121)
T 3t6o_A 48 PRKVLIDLEGVEF--FGSSFIELLVRGWKR-IKEDQQGVFALCSVSPYCVEVLQVTH 101 (121)
T ss_dssp SCEEEEECTTCCE--ECHHHHHHHHHHHHH-HTTSTTCEEEEESCCHHHHHHHTTCS
T ss_pred CCeEEEECCCCCE--EcHHHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHHHHhC
Confidence 3469999999664 555555555444333 334 6678999999988777766554
No 63
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=31.09 E-value=71 Score=22.33 Aligned_cols=53 Identities=13% Similarity=0.158 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHH
Q 043459 7 KSNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFL 59 (243)
Q Consensus 7 ~~~l~~~~~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~ 59 (243)
.-.||+++++.|+.|++.-..............+..-+.+.+||-.++.+.+.
T Consensus 31 ~L~LT~eQ~~qir~i~~~~r~~~~~~~~~~r~~l~~Li~a~~fDeaav~al~~ 83 (138)
T 3oeo_A 31 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIITSDTFDKVKAEAQIA 83 (138)
T ss_dssp CSCCCTTHHHHHHHHHHHHSSSSCCCCTTHHHHHHHHHTCSSCCHHHHHHHHG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 45789999999999988876642222223335566666777899887666554
No 64
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=29.63 E-value=1e+02 Score=23.09 Aligned_cols=51 Identities=6% Similarity=0.150 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh
Q 043459 16 TKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQT 67 (243)
Q Consensus 16 ~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~~~~R~~ 67 (243)
+.-++|.+|+.+. ..++...+.++++..-+...+.+.+.+.|+...+.-.+
T Consensus 108 ~Gr~~l~~~l~~~-~~~~~~~~~f~~kl~f~~~l~~~~~~~~L~~~~~~~~~ 158 (204)
T 3l9f_A 108 SGKKELASYLQSD-VNDEIFKSDFLMRLFFGNSLNDDDLEQLIREEIERKEE 158 (204)
T ss_dssp HHHHHHHHHHHSC-CCCCEEECHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cCCCCCccHHHHHHHHhhhCCHHHHHHHHHHHHHHHHH
Confidence 3456677888773 33444577899999888888999999998887765544
No 65
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=29.23 E-value=1.2e+02 Score=22.51 Aligned_cols=62 Identities=8% Similarity=0.049 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHc-----ccCChhhhhceEEecCcchHHHHHhcCC
Q 043459 157 LRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVY-----PFIDNNTKKKIVFVQDKKLKSTLLEEID 223 (243)
Q Consensus 157 ~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik-----~~l~~~~~~ki~~~~~~~~~~~L~~~i~ 223 (243)
++-+..++...|-..- -+.|.++|...+.+-+...++ -|++++-.+.+.+.++. +++.+++.
T Consensus 122 LdElfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~---ee~~~~l~ 188 (189)
T 3sbx_A 122 LDELLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDNL---DDALQACA 188 (189)
T ss_dssp HHHHHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESSH---HHHHHHHC
T ss_pred HHHHHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCCH---HHHHHHhc
Confidence 3434444443344332 368999999766666665543 48899999999998765 67766654
No 66
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=28.67 E-value=51 Score=25.16 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHHhhhC----CC-------------CCCCChHHHHH-HHH---hcCC--CHHHHHHHHHHHHHHh
Q 043459 9 NIDEKEETKIRLMRALVEKQD----PS-------------SKEVDDPTLRR-FLR---ARDL--DVEKASGMFLKYLKWR 65 (243)
Q Consensus 9 ~l~~~~~~~l~~lr~~l~~~~----~~-------------~~~~~d~~llr-fL~---~~~~--d~~~a~~~l~~~~~~R 65 (243)
+||+.+.+.+.+.++.+++.. +. ....+...+++ .|. ..+- ..+...+.+....+-|
T Consensus 88 ~Ls~~e~~~l~~~~~~L~~lGf~ie~fg~~~v~V~~vP~~l~~~d~~~ll~~ll~~l~~~~~~~~~~~~~~~~~as~ACr 167 (220)
T 3ncv_A 88 AASHEECAALADHAETLAGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRILATMSCH 167 (220)
T ss_dssp ECCHHHHHHHHHHHHHHHHTTCEEECCSTTEEEEEEEETTSCCSCHHHHHHHHHHHHTTCC-----CTTHHHHHHHHTTC
T ss_pred EcCHHHHHHHHHHHHHHHhCCCEEEECCCCEEEEEEcCcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 579999999999999999952 10 11223333333 222 2111 1222333444444445
Q ss_pred hhcCCCCCCCCCCchhhhhcCC-ceeccCCCCCCcEEEEe
Q 043459 66 QTFVPNGSISLSEVPNELSQNK-MFMQGFDKKGRPIATVL 104 (243)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~~~~-~~~~g~d~~Grpv~~~~ 104 (243)
.+......++.+++...++.-. .-.+..++.|||+++.-
T Consensus 168 ~AIk~g~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~i~l 207 (220)
T 3ncv_A 168 GSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKL 207 (220)
T ss_dssp SSSCSSCCCCHHHHHHHHHHHHTSTTTTBCTTSCBSEEEE
T ss_pred hhhhcCCCCCHHHHHHHHHHHHhCCCCCcCCCCCcEEEEe
Confidence 4433322245455554443321 22456788999988753
No 67
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=28.61 E-value=85 Score=20.31 Aligned_cols=51 Identities=8% Similarity=-0.005 Sum_probs=33.9
Q ss_pred EEEEecCCCCCCCccHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHc
Q 043459 142 VVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVY 195 (243)
Q Consensus 142 ~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik 195 (243)
.+|+|+++++ .+|...+..+..+.+ ....+-..+.++|++.-+.-++....
T Consensus 45 ~vvlDls~v~--~iDssgl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~g 95 (116)
T 1th8_B 45 HIVLNLGQLT--FMDSSGLGVILGRYK-QIKNVGGQMVVCAVSPAVKRLFDMSG 95 (116)
T ss_dssp EEEEEEEEEE--EECHHHHHHHHHHHH-HHHHTTCCEEEESCCHHHHHHHHHHT
T ss_pred EEEEECCCCc--EEccHHHHHHHHHHH-HHHHhCCeEEEEeCCHHHHHHHHHhC
Confidence 5799999955 455554444444333 22334568999999998888887765
No 68
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=28.27 E-value=1.5e+02 Score=20.43 Aligned_cols=43 Identities=19% Similarity=0.053 Sum_probs=25.5
Q ss_pred ceEEEEEecCCCCCCCccHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHH
Q 043459 139 EKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIV 194 (243)
Q Consensus 139 ~~~~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~i 194 (243)
.|++++.|+.| +..|. . ..+. ... .++.|+|.|....++...+
T Consensus 59 dgVlvltDLGg-sp~N~--~--~al~----~~~----~~v~viNlPmvega~~aa~ 101 (131)
T 3ct6_A 59 DNLLTFFDLGS-ARMNL--D--LVSE----MTD----KELTIFNVPLIEGAYTASA 101 (131)
T ss_dssp SEEEEEESSGG-GHHHH--H--HHHH----TCS----SEEEECCSCHHHHHHHHHH
T ss_pred CCEEEEEeCCC-ChHHH--H--HHHH----hcC----CCEEEEEhhHHHHHHHHHH
Confidence 69999999944 22111 1 1111 111 3788889999976666543
No 69
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=27.71 E-value=81 Score=23.60 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHH
Q 043459 17 KIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLK 60 (243)
Q Consensus 17 ~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~ 60 (243)
+++.|.+.|.+. .+++......+--||.+-+.++++|.+..+.
T Consensus 21 CM~~l~~~Lr~~-~hL~h~gR~ql~lFLkgiGls~ee~l~f~r~ 63 (194)
T 3lgb_A 21 CIKNLMEGLKKN-HHLRYYGRQQLSLFLKGIGLSADEALKFWSE 63 (194)
T ss_dssp HHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCchhHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 566777777775 6677677888999999999999999998543
No 70
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=27.42 E-value=34 Score=15.99 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=9.4
Q ss_pred cCCCCCCccCCCC
Q 043459 231 YGGQLPLVPIQET 243 (243)
Q Consensus 231 ~GG~~~~~~~~~~ 243 (243)
-||+|...+.++|
T Consensus 7 pggqcgvsqysda 19 (27)
T 1ym0_B 7 PGGQCGVSQYSDA 19 (27)
T ss_dssp TTSCCSCCSSTTT
T ss_pred cCCcccceecccc
Confidence 3888887777664
No 71
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.63 E-value=1.1e+02 Score=18.71 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhCCCCCCCChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 15 ETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 15 ~~~l~~lr~~l~~~~~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
.+.+.+||+...+ .-|..+-.+++..+.+.+.+.+.|.+-
T Consensus 11 ~qvfheLkQrFPE-------vPd~VVsqc~~qN~~Nl~aC~~~L~qE 50 (75)
T 2dae_A 11 FQVLHDLRQKFPE-------VPEVVVSRCMLQNNNNLDACCAVLSQE 50 (75)
T ss_dssp HHHHHHHHHHSSS-------SCHHHHHHHHTTTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-------CcHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 4566777777644 468899999999999999999998754
No 72
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=25.51 E-value=25 Score=28.16 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=24.1
Q ss_pred ccccccceEEEeCChHHHHHHHHHcccCChhh
Q 043459 171 YPERLGKLFIVHAPYIFMTVWKIVYPFIDNNT 202 (243)
Q Consensus 171 yP~rl~~i~ivn~p~~~~~~~~~ik~~l~~~~ 202 (243)
+...-..++||||||-+.-..+-+-|++.+.+
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l 264 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTYF 264 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHHS
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHHh
Confidence 45556689999999999887777777665543
No 73
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=23.68 E-value=1.3e+02 Score=21.24 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=19.6
Q ss_pred ceEEEEEecCCCCCCCccHHHHHHHHHHHhhcccc
Q 043459 139 EKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPE 173 (243)
Q Consensus 139 ~~~~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~ 173 (243)
+++++|.| .+ -++..++.+++.+...||.
T Consensus 35 ~g~~vi~D-ya-----HnP~si~a~l~al~~~~~~ 63 (163)
T 3mvn_A 35 NNITVYDD-FA-----HHPTAITATIDALRAKVGQ 63 (163)
T ss_dssp TTEEEEEE-CC-----CSHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEc-CC-----CCHHHHHHHHHHHHHhcCC
Confidence 46778888 22 2367777777777777775
No 74
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=23.58 E-value=46 Score=14.83 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=10.2
Q ss_pred CChHHHHHHHHhcC
Q 043459 35 VDDPTLRRFLRARD 48 (243)
Q Consensus 35 ~~d~~llrfL~~~~ 48 (243)
..|..|+|||...+
T Consensus 3 ~kdhqllrylldkd 16 (21)
T 3dct_B 3 SKDHQLLRYLLDKD 16 (26)
T ss_pred hhHHHHHHHHHccc
Confidence 35778999987654
No 75
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=23.48 E-value=89 Score=18.14 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.0
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHH
Q 043459 36 DDPTLRRFLRARDLDVEKASGMF 58 (243)
Q Consensus 36 ~d~~llrfL~~~~~d~~~a~~~l 58 (243)
...++.+-|..+++++.+|++.+
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 55678889999999999999987
No 76
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=23.19 E-value=2.1e+02 Score=22.55 Aligned_cols=76 Identities=13% Similarity=0.119 Sum_probs=44.5
Q ss_pred CCCcEEEEeCccccccccCCHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCCCc---cHHHHHHHHHHHhhccc
Q 043459 96 KGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNS---DLRAYLGALSILQDYYP 172 (243)
Q Consensus 96 ~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~iI~D~~g~~~~~~---~~~~~k~~~~~~~~~yP 172 (243)
.|.|++++......... .-..++..++....+.+.. .+...--+|+|- |+++..- ++..++.+-.+..-.||
T Consensus 124 ~~~~~vlMH~~~~p~~~-~vv~ev~~~l~~~i~~a~~---aGI~~~~IilDP-GiGFgKt~~~N~~ll~~l~~~~~lg~P 198 (270)
T 4hb7_A 124 YDAEIILMHNGNGNRDE-PVVEEMLTSLLAQAHQAKI---AGIPSNKIWLDP-GIGFAKTRNEEAEVMARLDELVATEYP 198 (270)
T ss_dssp TTCEEEEECCCSSCCSS-CHHHHHHHHHHHHHHHHHH---TTCCGGGEEEEC-CTTSSCCHHHHHHHHTCHHHHHTTCSC
T ss_pred cCCCeEEeccccCCccc-cchhHHHHHHHHHHHHHHH---cCCCCceEEEeC-CCCcccccccHHHHHhhHHHHhcCCCC
Confidence 46777777543322122 2245666666655665444 344444688996 6666543 56677777666666788
Q ss_pred cccc
Q 043459 173 ERLG 176 (243)
Q Consensus 173 ~rl~ 176 (243)
-.++
T Consensus 199 vLvG 202 (270)
T 4hb7_A 199 VLLA 202 (270)
T ss_dssp BEEC
T ss_pred EEEE
Confidence 6554
No 77
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=22.98 E-value=2.9e+02 Score=21.96 Aligned_cols=129 Identities=14% Similarity=0.150 Sum_probs=67.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhhhcCCCCCCCCCCchhhhhcCCc----eeccCCCCCCcEEE-EeCcccccc-ccCCHH
Q 043459 44 LRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKM----FMQGFDKKGRPIAT-VLGARHFQN-KLGGLE 117 (243)
Q Consensus 44 L~~~~~d~~~a~~~l~~~~~~R~~~~~~~~~~~~~~~~~l~~~~~----~~~g~d~~Grpv~~-~~~~~~~~~-~~~~~~ 117 (243)
+...+.+.++..+.+++...--+. ++..+.+....+.|-+ .+.|.-.+=+||+. ..-|...+- +..+..
T Consensus 153 l~~~G~s~eeI~~~l~~~~~~~~~-----~f~v~~L~~L~kGGRis~~~a~ig~lL~IKPIl~~~~~G~l~~~~KvRg~k 227 (298)
T 3jr7_A 153 CEKAGMTFEEVVESVECYIEEQHT-----YFVLENLDTLRKNGRLTGIKSLVAGALNIKPIMGSTPQGTICQKEKARGMK 227 (298)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCCE-----EEECSCCHHHHHTTCSTTCCC--CCCTTEEEEEEECTTSCEEEEEEEESHH
T ss_pred HHHcCCCHHHHHHHHHHHHhhCeE-----EEEeCChHHHHhCCeehHHHHHHHhhcCcEEEEEEccCCeEEEeeecCCHH
Confidence 344567999998888887442222 2333444444343333 23344444567763 334443321 112333
Q ss_pred HHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCCCccHHHHHHHHHHHhhcccccccceEEEeCChHHHH
Q 043459 118 EFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMT 189 (243)
Q Consensus 118 ~~~~~~~~~~E~~~~~~~~~~~~~~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~ 189 (243)
+++-.++|.+.+.........+.|.... +......+.+.+++.||. ..+.+...++.+.+
T Consensus 228 ---ka~~~l~~~~~~~~~~~~~~~v~I~h~~-------~~e~a~~l~~~l~~~~~~--~~i~i~~~g~vig~ 287 (298)
T 3jr7_A 228 ---KALVKMADCVAADVVNAGDKILAIAHCN-------CEERAKEVQRLLKERFAV--KSSFIVDTSGISTV 287 (298)
T ss_dssp ---HHHHHHHHHHHHHCCSGGGCEEEEEESS-------CHHHHHHHHHHHHHHCCC--SEEEEEECCHHHHH
T ss_pred ---HHHHHHHHHHHHHhccCCCcEEEEEeCC-------CHHHHHHHHHHHHhhcCC--CcEEEEEEccEEEE
Confidence 3344444444444332223344454432 256667777888889984 57888888776543
No 78
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=22.69 E-value=99 Score=20.10 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=33.3
Q ss_pred EEEEecCCCCCCCccHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHc
Q 043459 142 VVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVY 195 (243)
Q Consensus 142 ~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik 195 (243)
.+|+|+++++. +|...+..+....+ ..-.+-..+.+.|++.-+.-++.+..
T Consensus 44 ~vvlDls~v~~--iDssgl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~g 94 (117)
T 1h4x_A 44 TIIWNFERLSF--MDSSGVGLVLGRMR-ELEAVAGRTILLNPSPTMRKVFQFSG 94 (117)
T ss_dssp EEEEEEEEEEE--ECTHHHHHHHHHHH-HHHTTTCEEEEESCCHHHHHHHHHTT
T ss_pred EEEEECCCCcE--echHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHHHHhC
Confidence 57999999654 45444444443332 22344578899999998888887764
No 79
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.82 E-value=1.3e+02 Score=17.72 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=19.2
Q ss_pred CChHHHHHHHHhc-CCCHHHHHHHHHHH
Q 043459 35 VDDPTLRRFLRAR-DLDVEKASGMFLKY 61 (243)
Q Consensus 35 ~~d~~llrfL~~~-~~d~~~a~~~l~~~ 61 (243)
.+.....+=|+++ ++|++.|.+-|-.+
T Consensus 21 F~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 21 FPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 4566677777777 57888887776654
No 80
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=20.36 E-value=2.3e+02 Score=21.12 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHc-----ccCChhhhhceEEecCcchHHHHHhcCC
Q 043459 157 LRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVY-----PFIDNNTKKKIVFVQDKKLKSTLLEEID 223 (243)
Q Consensus 157 ~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik-----~~l~~~~~~ki~~~~~~~~~~~L~~~i~ 223 (243)
++-+..++...|-.+. -+.+.++|...+.+-++..+. -|++++-.+.+.+.++. +++.+++.
T Consensus 131 ldEl~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~---~e~~~~l~ 197 (199)
T 3qua_A 131 LEEFFEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDNV---EAALEACA 197 (199)
T ss_dssp HHHHHHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEESSH---HHHHHHHS
T ss_pred HHHHHHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeCCH---HHHHHHHh
Confidence 4444444444444432 357999998777777777654 36777888889988765 56666554
No 81
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.31 E-value=1.3e+02 Score=19.00 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=18.4
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHH
Q 043459 35 VDDPTLRRFLRARDLDVEKASGMFLKY 61 (243)
Q Consensus 35 ~~d~~llrfL~~~~~d~~~a~~~l~~~ 61 (243)
.+..-..+=|+++++|++.|.+-|-.+
T Consensus 41 F~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 41 FPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 455666677777777777777766544
No 82
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=20.23 E-value=88 Score=24.47 Aligned_cols=69 Identities=7% Similarity=0.143 Sum_probs=38.6
Q ss_pred hhcccccccceEEEeCChHHHH---HHHHHcccCChhhhhceEEecCcchH----HHHHhcCCCCCCcc-ccCCCCCCcc
Q 043459 168 QDYYPERLGKLFIVHAPYIFMT---VWKIVYPFIDNNTKKKIVFVQDKKLK----STLLEEIDESQIPE-IYGGQLPLVP 239 (243)
Q Consensus 168 ~~~yP~rl~~i~ivn~p~~~~~---~~~~ik~~l~~~~~~ki~~~~~~~~~----~~L~~~i~~~~LP~-~~GG~~~~~~ 239 (243)
+..|..|-.+|||||.-.-... +.+++... .-..+|.|+++.... .+..+..+...+-. -.||++++..
T Consensus 35 ~YIy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i---~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~ 111 (252)
T 3u5c_A 35 PYVFNARPDGVHVINVGKTWEKLVLAARIIAAI---PNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYI 111 (252)
T ss_dssp CCEEEEETTTEEEECHHHHHHHHHHHHHHHTTS---SSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTT
T ss_pred hheecccCCCcEEecHHHHHHHHHHHHHHHHHH---hcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChh
Confidence 3457777779999997554433 33444432 235678888775322 23334444333322 4788887653
Done!