Query 043460
Match_columns 368
No_of_seqs 121 out of 1604
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 3.6E-30 7.9E-35 228.7 25.8 212 100-338 1-230 (230)
2 PLN03215 ascorbic acid mannose 99.6 3.9E-13 8.6E-18 124.3 24.8 297 4-344 5-354 (373)
3 PF07734 FBA_1: F-box associat 99.5 7.5E-13 1.6E-17 111.0 17.8 146 199-360 1-164 (164)
4 PF08268 FBA_3: F-box associat 99.5 1.1E-12 2.5E-17 105.4 14.1 108 199-324 1-118 (129)
5 PHA02713 hypothetical protein; 99.3 2.9E-10 6.2E-15 113.4 19.4 204 101-347 300-544 (557)
6 KOG4441 Proteins containing BT 99.2 1.2E-09 2.5E-14 108.9 18.4 203 100-345 328-555 (571)
7 KOG4441 Proteins containing BT 99.1 6.7E-09 1.4E-13 103.5 17.8 187 116-345 301-508 (571)
8 PHA02713 hypothetical protein; 99.1 9.1E-09 2E-13 102.7 18.6 186 117-345 273-498 (557)
9 PHA03098 kelch-like protein; P 99.1 2.1E-08 4.6E-13 100.2 20.7 187 116-345 311-520 (534)
10 PHA02790 Kelch-like protein; P 99.1 2.8E-08 6.2E-13 97.6 21.2 179 116-343 287-477 (480)
11 PLN02153 epithiospecifier prot 99.0 7.6E-08 1.6E-12 90.6 21.5 199 116-345 50-293 (341)
12 TIGR03547 muta_rot_YjhT mutatr 98.8 1.2E-06 2.6E-11 82.6 23.2 209 104-345 17-307 (346)
13 PLN02193 nitrile-specifier pro 98.8 7.6E-07 1.6E-11 87.4 20.7 198 116-345 193-419 (470)
14 PF12937 F-box-like: F-box-lik 98.8 6.3E-09 1.4E-13 67.7 3.6 39 4-42 2-40 (47)
15 TIGR03548 mutarot_permut cycli 98.8 3.1E-06 6.7E-11 79.1 22.7 148 117-296 40-205 (323)
16 smart00256 FBOX A Receptor for 98.7 1.5E-08 3.2E-13 63.8 3.6 38 6-43 1-38 (41)
17 PRK14131 N-acetylneuraminic ac 98.7 3.7E-06 8E-11 80.2 21.5 166 102-297 36-260 (376)
18 PF00646 F-box: F-box domain; 98.6 2.8E-08 6E-13 64.9 2.6 42 4-45 4-45 (48)
19 PHA03098 kelch-like protein; P 98.6 3.4E-06 7.4E-11 84.4 18.0 185 117-345 265-473 (534)
20 PLN02153 epithiospecifier prot 98.5 1.2E-05 2.6E-10 75.7 19.8 153 116-296 101-295 (341)
21 PHA02790 Kelch-like protein; P 98.5 4.2E-06 9.2E-11 82.3 17.2 139 100-257 314-454 (480)
22 PLN02193 nitrile-specifier pro 98.5 3.8E-05 8.1E-10 75.5 22.7 154 115-296 243-421 (470)
23 PRK14131 N-acetylneuraminic ac 98.4 6.9E-05 1.5E-09 71.5 20.9 86 167-257 189-287 (376)
24 TIGR03548 mutarot_permut cycli 98.3 4.3E-05 9.3E-10 71.3 17.7 147 101-258 120-312 (323)
25 TIGR03547 muta_rot_YjhT mutatr 98.2 0.00029 6.2E-09 66.4 21.2 86 167-257 168-265 (346)
26 KOG4693 Uncharacterized conser 97.8 0.00059 1.3E-08 59.7 13.0 202 114-345 42-285 (392)
27 KOG1230 Protein containing rep 97.7 0.0033 7E-08 58.5 16.0 203 117-345 99-349 (521)
28 KOG4693 Uncharacterized conser 97.1 0.0047 1E-07 54.3 9.5 151 116-296 105-287 (392)
29 KOG2120 SCF ubiquitin ligase, 97.0 0.00058 1.3E-08 61.1 3.1 38 5-42 100-137 (419)
30 KOG0379 Kelch repeat-containin 96.7 0.12 2.6E-06 51.1 17.1 149 168-345 89-258 (482)
31 KOG0379 Kelch repeat-containin 96.3 0.29 6.4E-06 48.3 17.3 198 117-345 89-310 (482)
32 KOG0281 Beta-TrCP (transducin 96.2 0.0045 9.8E-08 56.2 3.3 38 5-42 77-118 (499)
33 KOG1230 Protein containing rep 96.1 0.13 2.8E-06 48.2 12.3 127 199-345 81-224 (521)
34 KOG2997 F-box protein FBX9 [Ge 95.6 0.0067 1.4E-07 54.6 1.9 42 4-45 108-154 (366)
35 KOG4152 Host cell transcriptio 95.4 0.38 8.3E-06 46.4 13.0 206 116-344 57-310 (830)
36 KOG0274 Cdc4 and related F-box 95.3 1.5 3.3E-05 43.7 17.5 41 4-44 109-149 (537)
37 PF13360 PQQ_2: PQQ-like domai 94.1 3.7 7.9E-05 35.8 19.5 190 103-342 35-236 (238)
38 PF07762 DUF1618: Protein of u 93.5 0.73 1.6E-05 36.7 9.0 75 213-303 5-104 (131)
39 COG4257 Vgb Streptogramin lyas 93.4 4.3 9.3E-05 36.5 14.0 132 91-237 186-319 (353)
40 PF01344 Kelch_1: Kelch motif; 93.1 0.33 7.2E-06 30.7 5.3 35 198-233 6-47 (47)
41 PF02191 OLF: Olfactomedin-lik 93.1 5.4 0.00012 35.7 14.7 72 198-270 73-156 (250)
42 PF13964 Kelch_6: Kelch motif 93.0 0.23 4.9E-06 32.1 4.4 32 197-230 5-43 (50)
43 smart00284 OLF Olfactomedin-li 92.9 6.5 0.00014 35.2 14.7 76 194-270 74-161 (255)
44 PF08450 SGL: SMP-30/Gluconola 92.9 6.2 0.00014 34.9 22.5 201 100-345 7-222 (246)
45 PF13964 Kelch_6: Kelch motif 92.4 0.22 4.8E-06 32.2 3.8 22 114-135 26-47 (50)
46 COG2706 3-carboxymuconate cycl 91.7 11 0.00024 34.9 20.9 170 141-345 146-332 (346)
47 COG3055 Uncharacterized protei 91.1 3.8 8.3E-05 38.0 11.3 164 167-361 113-352 (381)
48 PF13360 PQQ_2: PQQ-like domai 90.7 10 0.00023 32.9 16.7 138 168-341 4-145 (238)
49 PF02897 Peptidase_S9_N: Proly 89.6 20 0.00043 34.4 19.8 116 201-344 285-412 (414)
50 PF05096 Glu_cyclase_2: Glutam 89.2 15 0.00031 33.1 13.2 110 198-341 48-162 (264)
51 COG2706 3-carboxymuconate cycl 88.5 21 0.00045 33.2 15.4 199 119-345 69-285 (346)
52 COG3055 Uncharacterized protei 88.3 22 0.00048 33.2 16.1 108 166-297 195-338 (381)
53 PF10282 Lactonase: Lactonase, 88.3 22 0.00049 33.3 22.6 220 97-345 41-286 (345)
54 PF07893 DUF1668: Protein of u 88.1 22 0.00048 33.4 14.5 127 204-345 76-216 (342)
55 PF07646 Kelch_2: Kelch motif; 86.5 1.8 3.9E-05 27.7 4.5 31 198-230 6-45 (49)
56 PF10282 Lactonase: Lactonase, 86.4 29 0.00062 32.5 27.2 173 139-345 143-333 (345)
57 KOG4341 F-box protein containi 85.9 0.58 1.3E-05 44.3 2.5 36 5-40 74-109 (483)
58 PF08450 SGL: SMP-30/Gluconola 85.9 24 0.00052 31.1 14.2 109 204-345 11-131 (246)
59 PRK04792 tolB translocation pr 85.3 39 0.00085 33.0 24.1 185 114-345 240-434 (448)
60 PRK00178 tolB translocation pr 84.2 42 0.0009 32.4 23.8 184 115-345 222-415 (430)
61 smart00612 Kelch Kelch domain. 84.0 2.3 4.9E-05 26.3 4.1 20 166-185 14-33 (47)
62 KOG1273 WD40 repeat protein [G 83.8 36 0.00077 31.3 16.8 234 99-366 71-313 (405)
63 PF13418 Kelch_4: Galactose ox 82.1 2 4.3E-05 27.4 3.2 21 115-135 28-48 (49)
64 PRK11138 outer membrane biogen 81.9 49 0.0011 31.6 21.0 109 104-227 69-183 (394)
65 KOG1310 WD40 repeat protein [G 81.8 33 0.00071 34.0 12.3 114 102-225 59-181 (758)
66 TIGR03300 assembly_YfgL outer 80.6 52 0.0011 31.1 21.4 99 104-227 65-168 (377)
67 KOG0291 WD40-repeat-containing 80.6 45 0.00096 34.4 13.1 105 244-350 355-480 (893)
68 PRK05137 tolB translocation pr 79.7 62 0.0013 31.4 24.8 186 114-345 224-421 (435)
69 PRK04043 tolB translocation pr 79.6 62 0.0014 31.4 22.9 183 115-345 212-409 (419)
70 PRK11138 outer membrane biogen 79.0 61 0.0013 30.9 15.6 107 104-233 256-364 (394)
71 PF07250 Glyoxal_oxid_N: Glyox 78.6 48 0.001 29.5 12.2 163 168-362 47-222 (243)
72 TIGR01640 F_box_assoc_1 F-box 78.3 45 0.00098 29.0 12.7 29 204-234 5-33 (230)
73 KOG0310 Conserved WD40 repeat- 77.7 60 0.0013 31.5 12.5 176 122-339 8-187 (487)
74 TIGR02658 TTQ_MADH_Hv methylam 76.5 67 0.0015 30.3 12.7 119 199-345 14-146 (352)
75 KOG2055 WD40 repeat protein [G 76.3 12 0.00027 35.8 7.6 72 252-348 227-302 (514)
76 COG3386 Gluconolactonase [Carb 74.5 72 0.0016 29.5 12.4 33 204-237 36-69 (307)
77 PF01344 Kelch_1: Kelch motif; 74.5 18 0.00038 22.4 6.6 39 243-296 5-47 (47)
78 smart00612 Kelch Kelch domain. 74.1 7.6 0.00016 23.8 4.2 22 214-235 15-36 (47)
79 PF13418 Kelch_4: Galactose ox 74.0 10 0.00022 23.9 4.8 31 199-230 7-44 (49)
80 PRK11028 6-phosphogluconolacto 73.5 76 0.0016 29.2 24.6 170 142-345 128-315 (330)
81 PF05096 Glu_cyclase_2: Glutam 73.3 70 0.0015 28.8 19.0 141 165-343 66-210 (264)
82 PF03088 Str_synth: Strictosid 73.0 7.5 0.00016 28.7 4.4 19 327-345 36-54 (89)
83 KOG0289 mRNA splicing factor [ 71.9 92 0.002 30.0 12.0 111 204-345 358-471 (506)
84 KOG2055 WD40 repeat protein [G 70.5 69 0.0015 31.0 11.0 112 204-344 268-382 (514)
85 TIGR03300 assembly_YfgL outer 70.3 98 0.0021 29.2 13.3 38 197-235 59-96 (377)
86 PLN02919 haloacid dehalogenase 69.9 1.8E+02 0.0039 32.1 19.5 159 103-269 693-889 (1057)
87 PF13570 PQQ_3: PQQ-like domai 68.4 10 0.00023 22.8 3.7 26 197-223 15-40 (40)
88 TIGR03075 PQQ_enz_alc_DH PQQ-d 67.3 1.4E+02 0.003 30.0 13.3 121 197-343 63-196 (527)
89 PF13415 Kelch_3: Galactose ox 66.9 5.5 0.00012 25.4 2.3 21 116-136 19-39 (49)
90 PF07646 Kelch_2: Kelch motif; 65.3 12 0.00025 23.8 3.6 37 244-295 6-48 (49)
91 TIGR03074 PQQ_membr_DH membran 65.2 1.6E+02 0.0034 31.2 13.5 29 197-226 188-216 (764)
92 PLN02772 guanylate kinase 64.7 49 0.0011 31.7 9.0 68 198-270 29-108 (398)
93 PF06433 Me-amine-dh_H: Methyl 64.2 1.3E+02 0.0028 28.3 14.3 97 115-223 66-166 (342)
94 KOG0649 WD40 repeat protein [G 63.9 31 0.00068 30.5 6.8 76 260-349 81-157 (325)
95 COG1520 FOG: WD40-like repeat 63.8 1.2E+02 0.0025 28.7 11.7 109 199-342 64-177 (370)
96 PRK04922 tolB translocation pr 62.8 1.5E+02 0.0033 28.7 23.5 184 115-345 227-420 (433)
97 PF07893 DUF1668: Protein of u 61.8 1.4E+02 0.0031 28.0 16.5 145 97-257 69-251 (342)
98 PF12458 DUF3686: ATPase invol 61.0 1.6E+02 0.0034 28.5 11.4 135 103-270 237-386 (448)
99 smart00564 PQQ beta-propeller 60.8 27 0.00058 19.6 4.3 24 204-227 6-29 (33)
100 PRK04043 tolB translocation pr 60.1 1.7E+02 0.0037 28.3 13.3 102 213-345 212-318 (419)
101 KOG2437 Muskelin [Signal trans 58.0 18 0.0004 35.3 4.8 128 198-345 265-421 (723)
102 KOG3545 Olfactomedin and relat 57.3 1.4E+02 0.0031 26.5 11.4 79 191-270 65-155 (249)
103 TIGR03866 PQQ_ABC_repeats PQQ- 56.6 1.4E+02 0.003 26.3 24.2 185 114-342 51-243 (300)
104 TIGR03075 PQQ_enz_alc_DH PQQ-d 56.4 2.2E+02 0.0048 28.5 16.8 28 199-227 116-143 (527)
105 PF13013 F-box-like_2: F-box-l 56.1 13 0.00029 28.5 3.0 28 4-31 23-50 (109)
106 KOG0293 WD40 repeat-containing 53.5 2.1E+02 0.0047 27.5 14.3 131 116-269 291-426 (519)
107 TIGR03866 PQQ_ABC_repeats PQQ- 48.6 1.9E+02 0.0041 25.4 24.5 178 114-340 9-191 (300)
108 cd01206 Homer Homer type EVH1 46.7 58 0.0013 24.9 5.0 42 115-162 10-52 (111)
109 cd01207 Ena-Vasp Enabled-VASP- 45.6 59 0.0013 25.1 5.1 44 116-162 9-52 (111)
110 KOG2502 Tub family proteins [G 45.5 13 0.00028 34.5 1.7 37 4-40 46-90 (355)
111 KOG4152 Host cell transcriptio 45.3 3.2E+02 0.007 27.2 12.5 77 152-232 213-311 (830)
112 PF01011 PQQ: PQQ enzyme repea 44.8 59 0.0013 19.2 4.1 29 205-233 1-29 (38)
113 cd00216 PQQ_DH Dehydrogenases 44.7 3.2E+02 0.007 27.0 16.3 33 200-233 106-139 (488)
114 TIGR02800 propeller_TolB tol-p 43.8 2.9E+02 0.0063 26.2 23.6 184 115-345 213-406 (417)
115 KOG0973 Histone transcription 43.7 1.5E+02 0.0033 31.7 9.1 49 247-296 78-126 (942)
116 PF14157 YmzC: YmzC-like prote 43.6 32 0.00069 23.4 2.9 16 328-343 41-56 (63)
117 KOG2437 Muskelin [Signal trans 40.1 54 0.0012 32.2 5.0 110 121-236 234-367 (723)
118 KOG1912 WD40 repeat protein [G 39.1 4.9E+02 0.011 27.5 12.3 59 208-270 246-306 (1062)
119 KOG0639 Transducin-like enhanc 38.8 4.1E+02 0.0088 26.4 10.9 65 204-270 476-541 (705)
120 KOG3926 F-box proteins [Amino 38.4 27 0.00059 31.3 2.5 36 5-40 204-240 (332)
121 PLN00181 protein SPA1-RELATED; 37.8 5.2E+02 0.011 27.4 23.3 110 204-338 629-740 (793)
122 TIGR02800 propeller_TolB tol-p 37.4 3.6E+02 0.0079 25.5 21.9 187 114-345 168-363 (417)
123 PF09910 DUF2139: Uncharacteri 37.3 3.4E+02 0.0073 25.1 11.1 104 118-233 133-244 (339)
124 KOG0649 WD40 repeat protein [G 36.0 3.2E+02 0.007 24.4 12.8 62 204-270 126-188 (325)
125 PF06433 Me-amine-dh_H: Methyl 35.1 3.9E+02 0.0084 25.1 20.6 209 97-348 99-334 (342)
126 PRK02889 tolB translocation pr 34.3 4.3E+02 0.0094 25.5 24.8 184 115-344 219-411 (427)
127 PF03178 CPSF_A: CPSF A subuni 32.9 3.9E+02 0.0084 24.5 11.3 74 243-345 92-168 (321)
128 KOG0647 mRNA export protein (c 32.1 2.5E+02 0.0054 25.9 7.5 88 230-344 20-110 (347)
129 PF02393 US22: US22 like; Int 32.1 76 0.0017 24.5 4.1 25 321-345 84-108 (125)
130 KOG0316 Conserved WD40 repeat- 32.0 3.7E+02 0.008 24.0 17.9 110 103-232 27-140 (307)
131 TIGR03032 conserved hypothetic 31.5 2.1E+02 0.0046 26.6 7.1 52 198-257 207-259 (335)
132 PRK04792 tolB translocation pr 31.1 5.1E+02 0.011 25.2 22.7 142 165-345 240-391 (448)
133 KOG0639 Transducin-like enhanc 30.9 3.3E+02 0.0071 27.0 8.5 104 213-341 439-544 (705)
134 KOG0266 WD40 repeat-containing 30.5 5.2E+02 0.011 25.2 15.0 153 102-270 212-366 (456)
135 PLN02919 haloacid dehalogenase 30.1 7.9E+02 0.017 27.2 25.7 216 100-340 631-892 (1057)
136 PF03478 DUF295: Protein of un 30.1 41 0.00089 21.9 1.8 18 318-335 31-54 (54)
137 KOG0303 Actin-binding protein 29.4 5.2E+02 0.011 24.8 12.3 65 204-271 184-252 (472)
138 cd00216 PQQ_DH Dehydrogenases 29.4 2.5E+02 0.0054 27.8 8.0 57 199-259 402-458 (488)
139 PF12768 Rax2: Cortical protei 28.7 1.3E+02 0.0028 27.4 5.4 62 165-227 14-77 (281)
140 PF07250 Glyoxal_oxid_N: Glyox 28.5 2.2E+02 0.0049 25.3 6.7 85 117-212 47-136 (243)
141 KOG0772 Uncharacterized conser 28.0 1.7E+02 0.0037 29.0 6.1 72 201-272 325-398 (641)
142 KOG0299 U3 snoRNP-associated p 27.2 6E+02 0.013 24.8 18.2 35 96-131 205-239 (479)
143 KOG2445 Nuclear pore complex c 27.1 5.1E+02 0.011 24.0 11.0 80 251-345 126-218 (361)
144 COG4257 Vgb Streptogramin lyas 26.9 5E+02 0.011 23.8 17.0 211 102-345 70-314 (353)
145 PF07861 WND: WisP family N-Te 26.9 1.1E+02 0.0023 26.0 4.0 37 91-129 27-63 (263)
146 KOG3006 Transthyretin and rela 26.5 1.9E+02 0.0042 22.5 5.1 47 166-226 38-89 (132)
147 TIGR02658 TTQ_MADH_Hv methylam 26.4 5.6E+02 0.012 24.2 23.3 203 99-345 111-340 (352)
148 cd00260 Sialidase Sialidases o 25.8 5.3E+02 0.012 23.8 11.5 82 198-296 150-242 (351)
149 PRK03629 tolB translocation pr 25.6 6.1E+02 0.013 24.5 23.8 186 114-345 221-415 (429)
150 KOG2321 WD40 repeat protein [G 25.4 7.2E+02 0.016 25.2 11.2 119 206-345 147-267 (703)
151 TIGR02276 beta_rpt_yvtn 40-res 25.2 1.5E+02 0.0033 17.3 4.3 25 318-342 2-28 (42)
152 PF15408 PH_7: Pleckstrin homo 25.1 54 0.0012 23.8 1.8 24 20-43 76-99 (104)
153 KOG0291 WD40-repeat-containing 24.6 8.4E+02 0.018 25.7 20.8 54 213-270 413-468 (893)
154 PF02239 Cytochrom_D1: Cytochr 24.5 6.1E+02 0.013 24.0 12.5 106 205-342 5-114 (369)
155 PRK03629 tolB translocation pr 23.1 6.9E+02 0.015 24.1 21.6 185 115-345 178-372 (429)
156 KOG2048 WD40 repeat protein [G 22.7 8.6E+02 0.019 25.1 15.7 154 98-270 209-363 (691)
157 KOG2139 WD40 repeat protein [G 22.6 6.8E+02 0.015 23.8 9.1 114 199-342 157-273 (445)
158 KOG0300 WD40 repeat-containing 22.2 4.8E+02 0.011 24.2 7.6 61 258-345 376-437 (481)
159 KOG4378 Nuclear protein COP1 [ 21.4 3.9E+02 0.0084 26.5 7.1 64 250-341 177-244 (673)
160 PF07569 Hira: TUP1-like enhan 21.4 5.4E+02 0.012 22.3 8.8 85 244-346 16-105 (219)
161 PRK04922 tolB translocation pr 21.4 7.4E+02 0.016 23.8 21.7 143 165-345 226-377 (433)
162 PRK11028 6-phosphogluconolacto 21.2 6.3E+02 0.014 23.0 25.2 113 204-337 136-259 (330)
163 PRK05137 tolB translocation pr 21.2 7.4E+02 0.016 23.8 23.6 137 115-270 181-322 (435)
164 PF07370 DUF1489: Protein of u 20.7 81 0.0018 25.2 2.2 23 200-223 44-71 (137)
165 KOG0296 Angio-associated migra 20.1 7.6E+02 0.016 23.5 12.1 101 213-345 85-187 (399)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.98 E-value=3.6e-30 Score=228.70 Aligned_cols=212 Identities=20% Similarity=0.340 Sum_probs=159.2
Q ss_pred EecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcC---CCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEe
Q 043460 100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKARED---VLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFS 173 (368)
Q Consensus 100 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~---~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vys 173 (368)
+++||||||+.. ...++||||+||+++.||+++.. ......+||||+ .+++|||+++.... ....++||+
T Consensus 1 ~~sCnGLlc~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~-~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 1 VVPCDGLICFSY---GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDP-IEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred CcccceEEEEec---CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecc-cCCcEEEEEEEeecCCCCCccEEEEE
Confidence 478999999885 26899999999999999976532 111257999999 57899999997642 457899999
Q ss_pred CCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeC------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe
Q 043460 174 SENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL 247 (368)
Q Consensus 174 s~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~ 247 (368)
+++++|+......+ .......+|++ ||.+||++.. ..|++||+++|+|++.+++|...........|++
T Consensus 77 ~~~~~Wr~~~~~~~----~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~ 151 (230)
T TIGR01640 77 LGSNSWRTIECSPP----HHPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLIN 151 (230)
T ss_pred eCCCCccccccCCC----CccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEE
Confidence 99999999873221 11122238999 9999999862 1799999999999933888875432222467899
Q ss_pred eCCeEEEEEEC--CCeEEEEEEccC-CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEE
Q 043460 248 CKGALNYASRN--QSTLLIWQLDDH-RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFL 324 (368)
Q Consensus 248 ~~G~L~~~~~~--~~~~~IW~l~~~-~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 324 (368)
.+|+|+++... ..+++||+|+++ ++ +|++..+|+...+..... ...+.++..++++++.
T Consensus 152 ~~G~L~~v~~~~~~~~~~IWvl~d~~~~---------------~W~k~~~i~~~~~~~~~~---~~~~~~~~~~g~I~~~ 213 (230)
T TIGR01640 152 YKGKLAVLKQKKDTNNFDLWVLNDAGKQ---------------EWSKLFTVPIPPLPDLVD---DNFLSGFTDKGEIVLC 213 (230)
T ss_pred ECCEEEEEEecCCCCcEEEEEECCCCCC---------------ceeEEEEEcCcchhhhhh---heeEeEEeeCCEEEEE
Confidence 99999999884 356999999987 44 799999998543332211 1457788878887777
Q ss_pred eeC---CeEEEEECCCC
Q 043460 325 GSC---DMIYRYHLKTN 338 (368)
Q Consensus 325 ~~~---~~~~~ydl~t~ 338 (368)
... ..++.||++|+
T Consensus 214 ~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 214 CEDENPFYIFYYNVGEN 230 (230)
T ss_pred eCCCCceEEEEEeccCC
Confidence 643 34999999885
No 2
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.61 E-value=3.9e-13 Score=124.31 Aligned_cols=297 Identities=12% Similarity=0.150 Sum_probs=159.1
Q ss_pred CCCCHHHHHHHHcCCC-chhhHHHhhhhHHHHhhhcCCchhhhhcCCCCCceEeecc-CCCCCCee-eccCCCCCCCCCC
Q 043460 4 IYLSEDLITEILSRLP-VKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPS-TQDSIGYI-SYSDNEECGNDGE 80 (368)
Q Consensus 4 ~~LP~Dll~~IL~rLp-~~~l~r~r~Vck~Wr~li~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~-~f~~~~~~~~~~~ 80 (368)
+.||+|||..|..||| ..+++|||+|||+||+.+....-...+ ++.++.++.+. ...+.... .+...++ ..
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~- 78 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGKKNPF--RTRPLILFNPINPSETLTDDRSYISRPG---AF- 78 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccccCCc--ccccccccCcccCCCCcccccccccccc---ce-
Confidence 5799999999999998 889999999999999988742100001 11111111110 01110000 0000000 00
Q ss_pred cccccccccCCCCCCCcEEEecCCcEEEEeec-CCCeeEEEEcccCccceecCCCCcCC-------CCCCCee-EEcCC-
Q 043460 81 GFAQSLTSLLPSESLPYALIDCCNGLILLGSS-LSKHRYYVCNPLTKQCVAIPKAREDV-------LASPPAL-AFHPC- 150 (368)
Q Consensus 81 ~~~~~~~~~~p~~~~~~~~~~s~~Glll~~~~-~~~~~~~v~NP~T~~~~~lP~~~~~~-------~~~~~~l-~~d~~- 150 (368)
+....-+..+ ..-++..|+|.-... .....+.+.||+++....+|+..... ....+.+ ..+..
T Consensus 79 -ls~~~~~r~~------~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~ 151 (373)
T PLN03215 79 -LSRAAFFRVT------LSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRR 151 (373)
T ss_pred -eeeeEEEEee------cCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEeccccc
Confidence 1111011111 001356899987654 25578899999999988877532110 0011111 00100
Q ss_pred -CCCCe----------------EEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeC
Q 043460 151 -DSSHY----------------KIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR 213 (368)
Q Consensus 151 -~~~~y----------------kvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~ 213 (368)
....| -|+.+... + .+.... .++|...... .....+-++. +|.+|.+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~-g--~l~~w~--~~~Wt~l~~~-------~~~~~DIi~~-kGkfYAvD~~ 218 (373)
T PLN03215 152 ETRPGYQRSALVKVKEGDNHRDGVLGIGRD-G--KINYWD--GNVLKALKQM-------GYHFSDIIVH-KGQTYALDSI 218 (373)
T ss_pred ccccceeEEEEEEeecCCCcceEEEEEeec-C--cEeeec--CCeeeEccCC-------CceeeEEEEE-CCEEEEEcCC
Confidence 00112 22222211 1 111111 4677776521 1133456888 9999999766
Q ss_pred CeEEEEEcCCCeEEEEEeCCC-CCC--CCCCceeEEeeCCeEEEEEEC---C--------------CeEEEEEEccCCCC
Q 043460 214 STILRYNIEALSEAEIIEVPD-KNN--HPCDSEVIGLCKGALNYASRN---Q--------------STLLIWQLDDHRHH 273 (368)
Q Consensus 214 ~~il~fD~~~~~~~~~~~lP~-~~~--~~~~~~~l~~~~G~L~~~~~~---~--------------~~~~IW~l~~~~~~ 273 (368)
+.+.++|..-+.-+ +-+.-. ... .......++++.|.|++|... + ..++|+.++...+
T Consensus 219 G~l~~i~~~l~i~~-v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~- 296 (373)
T PLN03215 219 GIVYWINSDLEFSR-FGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELA- 296 (373)
T ss_pred CeEEEEecCCceee-ecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCC-
Confidence 88888885432222 111111 111 111246788999999999871 1 2478888887655
Q ss_pred CCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEE--E-ecCCCEEEEeeCCeEEEEECCCCeEEEec
Q 043460 274 SNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYN--I-HPNSDIIFLGSCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~--~-~~~~~~v~~~~~~~~~~ydl~t~~~~~v~ 344 (368)
+|+++.+++-+.+--... ....+.+ + .-++++||+.++....+||++..++.-+.
T Consensus 297 --------------~WveV~sLgd~aLFlG~~--~s~sv~a~e~pG~k~NcIYFtdd~~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 297 --------------KWMEVKTLGDNAFVMATD--TCFSVLAHEFYGCLPNSIYFTEDTMPKVFKLDNGNGSSIE 354 (373)
T ss_pred --------------cEEEecccCCeEEEEECC--ccEEEecCCCCCccCCEEEEECCCcceEEECCCCCccceE
Confidence 899999997332221111 1122221 1 22579999999999999999999965543
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.54 E-value=7.5e-13 Score=111.03 Aligned_cols=146 Identities=16% Similarity=0.223 Sum_probs=96.8
Q ss_pred eEEEeCCeEEEEEe----CC--eEEEEEcCCCeE-EEEEeCCCCCCCCCCceeEEee-CCeEEEEEE--CCCeEEEEEEc
Q 043460 199 SVYSRGGILYNLTY----RS--TILRYNIEALSE-AEIIEVPDKNNHPCDSEVIGLC-KGALNYASR--NQSTLLIWQLD 268 (368)
Q Consensus 199 ~v~~~~G~lywl~~----~~--~il~fD~~~~~~-~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~--~~~~~~IW~l~ 268 (368)
+|++ ||++||++. .. .|++||+++|+| + .+++|...........|+.. +++||++.. ....++||+|+
T Consensus 1 gV~v-nG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~-~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFV-NGALHWLAYDENNDEKDFILSFDLSTEKFGR-SLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred CEEE-CCEEEeeEEecCCCCceEEEEEeccccccCC-EECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 5899 999999998 11 799999999999 7 89999876533335566544 779999975 34469999999
Q ss_pred cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe---e-C---CeEEEEECCCCeEE
Q 043460 269 DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG---S-C---DMIYRYHLKTNKME 341 (368)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~-~---~~~~~ydl~t~~~~ 341 (368)
+++. +..+|+|..+|+............... +-+..++++++.. . . ..++.++ +.+..+
T Consensus 79 ~~~~------------~~~SWtK~~~i~~~~~~~~~~~~~~~~-~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~ 144 (164)
T PF07734_consen 79 KYGY------------GKESWTKLFTIDLPPLPSLFFHFRNPS-FFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFI 144 (164)
T ss_pred eecc------------CcceEEEEEEEecCCCCCcccccccce-EEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEE
Confidence 7521 022999999999554443221000011 2234444444443 1 1 4688888 778888
Q ss_pred Eecc-CCCcceeeeeeeeec
Q 043460 342 LFST-RSPLHLYRLALLSSC 360 (368)
Q Consensus 342 ~v~~-~~~~~~~~~~py~p~ 360 (368)
++.. ........++-|+||
T Consensus 145 ~~~~~~~~~~~~~~~~YvpS 164 (164)
T PF07734_consen 145 EVDIEDKSSCWPSICNYVPS 164 (164)
T ss_pred EcccccCCCCCCCEEEECCC
Confidence 8876 222345567888886
No 4
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.48 E-value=1.1e-12 Score=105.37 Aligned_cols=108 Identities=23% Similarity=0.445 Sum_probs=80.8
Q ss_pred eEEEeCCeEEEEEe-----CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC----CeEEEEEEcc
Q 043460 199 SVYSRGGILYNLTY-----RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ----STLLIWQLDD 269 (368)
Q Consensus 199 ~v~~~~G~lywl~~-----~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~----~~~~IW~l~~ 269 (368)
++++ ||.+||++. ...|++||+++|+|+ .+++|...........|.+.+|+|+++.... ..++||+|++
T Consensus 1 gici-nGvly~~a~~~~~~~~~IvsFDv~~E~f~-~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 1 GICI-NGVLYWLAWSEDSDNNVIVSFDVRSEKFR-FIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred CEEE-CcEEEeEEEECCCCCcEEEEEEcCCceEE-EEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 5789 999999987 489999999999999 9999922222233678999999999998832 3599999998
Q ss_pred C-CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEE
Q 043460 270 H-RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFL 324 (368)
Q Consensus 270 ~-~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 324 (368)
+ ++ +|++.+.+-......... ...+.+.++...|++|+.
T Consensus 79 ~~k~---------------~Wsk~~~~lp~~~~~~~~-~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 79 YEKQ---------------EWSKKHIVLPPSWQHFVH-DCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cccc---------------eEEEEEEECChHHhcccC-CcEEEEEEEcCCCEEEEE
Confidence 8 44 899887643222211110 034678888889999988
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.28 E-value=2.9e-10 Score=113.42 Aligned_cols=204 Identities=10% Similarity=0.103 Sum_probs=130.5
Q ss_pred ecCCcEEEEeecC-----CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEE
Q 043460 101 DCCNGLILLGSSL-----SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIF 172 (368)
Q Consensus 101 ~s~~Glll~~~~~-----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vy 172 (368)
+..+|.|.+.++. ....++.+||.+++|..+|+++.... .++.+. -+-+|+.++... ....+++|
T Consensus 300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~--~~~~~~-----~~g~IYviGG~~~~~~~~sve~Y 372 (557)
T PHA02713 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC--RFSLAV-----IDDTIYAIGGQNGTNVERTIECY 372 (557)
T ss_pred EEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh--ceeEEE-----ECCEEEEECCcCCCCCCceEEEE
Confidence 3445555554431 13468899999999999999874332 122221 122566555533 23579999
Q ss_pred eCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeC------------------------CeEEEEEcCCCeEEE
Q 043460 173 SSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR------------------------STILRYNIEALSEAE 228 (368)
Q Consensus 173 ss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~------------------------~~il~fD~~~~~~~~ 228 (368)
++.+++|+..+.++.+ .....++.+ +|.||.+++. ..+.+||+.+++|+.
T Consensus 373 dp~~~~W~~~~~mp~~-----r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 373 TMGDDKWKMLPDMPIA-----LSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred ECCCCeEEECCCCCcc-----cccccEEEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 9999999998754321 122346788 9999999862 248899999999993
Q ss_pred EEeCCCCCCCCCCceeEEeeCCeEEEEEEC-CCe-E--EEEEEccCC-CCCCCCCCccCCCCCCceEEEEEeeecccccc
Q 043460 229 IIEVPDKNNHPCDSEVIGLCKGALNYASRN-QST-L--LIWQLDDHR-HHSNSHGSNKAASGARSWILKHSICMDEWGNK 303 (368)
Q Consensus 229 ~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~-~~~-~--~IW~l~~~~-~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~ 303 (368)
.-++|.... ...++..+|+||+++.. +.. . .+-..+-.. + +|+.+..|+.+...
T Consensus 447 v~~m~~~r~----~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~---------------~W~~~~~m~~~r~~-- 505 (557)
T PHA02713 447 LPNFWTGTI----RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN---------------GWELITTTESRLSA-- 505 (557)
T ss_pred cCCCCcccc----cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC---------------CeeEccccCccccc--
Confidence 334554432 33678889999999873 211 1 233444433 4 89999888743322
Q ss_pred CccccceEEEEEecCCCEEEEee----CCeEEEEECCCCeEEEeccCC
Q 043460 304 LHVFGLTRFYNIHPNSDIIFLGS----CDMIYRYHLKTNKMELFSTRS 347 (368)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~ydl~t~~~~~v~~~~ 347 (368)
.++..-++.||+.+ ...+-+||++|++|+.++...
T Consensus 506 ---------~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 506 ---------LHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred ---------ceeEEECCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 12222245677662 135899999999999999833
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.19 E-value=1.2e-09 Score=108.91 Aligned_cols=203 Identities=11% Similarity=0.104 Sum_probs=135.3
Q ss_pred EecCCcEEEEeecC-----CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEE
Q 043460 100 IDCCNGLILLGSSL-----SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDI 171 (368)
Q Consensus 100 ~~s~~Glll~~~~~-----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~v 171 (368)
++..+|.|.+.++. ....+..+||.+++|..+|++...+. .++.+ .-..+|++++... ....+|.
T Consensus 328 ~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~--~~~v~-----~l~g~iYavGG~dg~~~l~svE~ 400 (571)
T KOG4441|consen 328 VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS--DFGVA-----VLDGKLYAVGGFDGEKSLNSVEC 400 (571)
T ss_pred EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc--cceeE-----EECCEEEEEeccccccccccEEE
Confidence 44445555544431 23578999999999999999985332 22222 1244566665544 4557999
Q ss_pred EeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe----C---CeEEEEEcCCCeEEEEEeCCCCCCCCCCcee
Q 043460 172 FSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----R---STILRYNIEALSEAEIIEVPDKNNHPCDSEV 244 (368)
Q Consensus 172 yss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----~---~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~ 244 (368)
|+++++.|..++.+.... .....+.+ +|.||-+++ . ..+..||+.+++|+...+++..... ..
T Consensus 401 YDp~~~~W~~va~m~~~r-----~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~----~g 470 (571)
T KOG4441|consen 401 YDPVTNKWTPVAPMLTRR-----SGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG----FG 470 (571)
T ss_pred ecCCCCcccccCCCCcce-----eeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc----ce
Confidence 999999999998653311 22346777 999999998 2 6799999999999944455554433 35
Q ss_pred EEeeCCeEEEEEECCCeE---EEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCE
Q 043460 245 IGLCKGALNYASRNQSTL---LIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDI 321 (368)
Q Consensus 245 l~~~~G~L~~~~~~~~~~---~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
++..+|+||+++..+..- .+=..+-..+ +|+.+..|..+.-. .++..-++.
T Consensus 471 ~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~---------------~W~~v~~m~~~rs~-----------~g~~~~~~~ 524 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDGTSALSSVERYDPETN---------------QWTMVAPMTSPRSA-----------VGVVVLGGK 524 (571)
T ss_pred EEEECCEEEEECCccCCCccceEEEEcCCCC---------------ceeEcccCcccccc-----------ccEEEECCE
Confidence 889999999999843221 2222333244 89999777643221 233333566
Q ss_pred EEEe-------eCCeEEEEECCCCeEEEecc
Q 043460 322 IFLG-------SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 322 v~~~-------~~~~~~~ydl~t~~~~~v~~ 345 (368)
+|+. .-..+-.||++|++|+.+..
T Consensus 525 ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 525 LYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred EEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 7776 23579999999999999877
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.07 E-value=6.7e-09 Score=103.52 Aligned_cols=187 Identities=12% Similarity=0.145 Sum_probs=125.6
Q ss_pred eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC----CCcEEEEEeCCCCCceeccccCCCCCc
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR----MDPEVDIFSSENKTWITRKVSVKPRRP 191 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~----~~~~~~vyss~~~~W~~~~~~~~~~~p 191 (368)
..+..+||.+++|..+.+++.... ..+.+.-. -+|+.++... ....+++|++.++.|...+.+...+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~--~~~~~~~~-----~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R-- 371 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC--RVGVAVLN-----GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR-- 371 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc--cccEEEEC-----CEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc--
Confidence 567799999999999998884333 22333211 1555555443 3568999999999999987543321
Q ss_pred eeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC-CCeEEE
Q 043460 192 VSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN-QSTLLI 264 (368)
Q Consensus 192 ~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~-~~~~~I 264 (368)
.....+.+ +|.||.+++ -..+..||+.+.+|..+-+++.... ....++.+|+||+++.. ...-.+
T Consensus 372 ---~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~----~~gv~~~~g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 372 ---SDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS----GHGVAVLGGKLYIIGGGDGSSNCL 443 (571)
T ss_pred ---ccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCccee----eeEEEEECCEEEEEcCcCCCcccc
Confidence 22335777 999999998 3569999999999993444665332 34678889999999983 222122
Q ss_pred EE---EccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEE
Q 043460 265 WQ---LDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYH 334 (368)
Q Consensus 265 W~---l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~yd 334 (368)
=. .+-..+ .|+.+..|..+... .++.--++.||..+ ...+-+||
T Consensus 444 ~sve~YDP~t~---------------~W~~~~~M~~~R~~-----------~g~a~~~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 444 NSVECYDPETN---------------TWTLIAPMNTRRSG-----------FGVAVLNGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred ceEEEEcCCCC---------------ceeecCCccccccc-----------ceEEEECCEEEEECCccCCCccceEEEEc
Confidence 22 222244 89999988854322 12222345677662 23489999
Q ss_pred CCCCeEEEecc
Q 043460 335 LKTNKMELFST 345 (368)
Q Consensus 335 l~t~~~~~v~~ 345 (368)
++|++|+.++.
T Consensus 498 p~~~~W~~v~~ 508 (571)
T KOG4441|consen 498 PETNQWTMVAP 508 (571)
T ss_pred CCCCceeEccc
Confidence 99999999985
No 8
>PHA02713 hypothetical protein; Provisional
Probab=99.07 E-value=9.1e-09 Score=102.73 Aligned_cols=186 Identities=17% Similarity=0.103 Sum_probs=119.0
Q ss_pred eEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC----CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 117 RYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR----MDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 117 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~----~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
.+..+||.+++|..+++++.... ..+.+. -+-+|+.++... ....++.|++.++.|...+.+..+ .
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~--~~~~a~-----l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~---R 342 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII--NYASAI-----VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN---R 342 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc--ceEEEE-----ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch---h
Confidence 56789999999999998874332 111111 122555555432 235689999999999988754221 1
Q ss_pred eeeccceEEEeCCeEEEEEeC------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCe-----
Q 043460 193 SFYVLQSVYSRGGILYNLTYR------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQST----- 261 (368)
Q Consensus 193 ~~~~~~~v~~~~G~lywl~~~------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~----- 261 (368)
.....+.+ +|.||.+++. ..+..||+.+.+|...-++|..... ..++..+|+|++++.....
T Consensus 343 --~~~~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~----~~~~~~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 343 --CRFSLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS----YGMCVLDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred --hceeEEEE-CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc----ccEEEECCEEEEEeCCCccccccc
Confidence 22346888 9999999972 3589999999999944456654432 3566789999999873211
Q ss_pred ----------------EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe
Q 043460 262 ----------------LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG 325 (368)
Q Consensus 262 ----------------~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 325 (368)
-.+...+-..+ .|+.+..|+.+.... . +++. ++.||+.
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td---------------~W~~v~~m~~~r~~~--------~-~~~~--~~~IYv~ 469 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNN---------------IWETLPNFWTGTIRP--------G-VVSH--KDDIYVV 469 (557)
T ss_pred ccccccccccccccccceEEEECCCCC---------------eEeecCCCCcccccC--------c-EEEE--CCEEEEE
Confidence 12333333334 899887775332221 1 1222 3456665
Q ss_pred eC--------CeEEEEECCC-CeEEEecc
Q 043460 326 SC--------DMIYRYHLKT-NKMELFST 345 (368)
Q Consensus 326 ~~--------~~~~~ydl~t-~~~~~v~~ 345 (368)
++ ..+.+||+++ ++|+.+..
T Consensus 470 GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 470 CDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred eCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 22 2478999999 89999887
No 9
>PHA03098 kelch-like protein; Provisional
Probab=99.05 E-value=2.1e-08 Score=100.17 Aligned_cols=187 Identities=13% Similarity=0.132 Sum_probs=120.5
Q ss_pred eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
..++.+||.|++|..+|+++.... .++.+.- +-+|+.++... ....+++|+..+++|+..+..+.+ .
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~--~~~~~~~-----~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~---r 380 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRK--NPGVTVF-----NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP---R 380 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccc--cceEEEE-----CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC---C
Confidence 368899999999999998773322 1222211 12355554432 345789999999999987643221 1
Q ss_pred eeeccceEEEeCCeEEEEEeC-------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC--C---
Q 043460 193 SFYVLQSVYSRGGILYNLTYR-------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ--S--- 260 (368)
Q Consensus 193 ~~~~~~~v~~~~G~lywl~~~-------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~--~--- 260 (368)
....++.+ +|.+|.+++. ..+..||+.+.+|+...++|..... ...+..+|+|++++... .
T Consensus 381 --~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~----~~~~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 381 --YNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG----GCAIYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred --ccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC----ceEEEECCEEEEECCccCCCCCc
Confidence 22345778 9999999871 4689999999999933345544322 24567799999998721 1
Q ss_pred -eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEE
Q 043460 261 -TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYR 332 (368)
Q Consensus 261 -~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~ 332 (368)
.-.+|..+-.++ +|+.+..++.+... .. .... ++.||+.+ ...+.+
T Consensus 454 ~~~~v~~yd~~~~---------------~W~~~~~~~~~r~~--------~~-~~~~--~~~iyv~GG~~~~~~~~~v~~ 507 (534)
T PHA03098 454 VYNIVESYNPVTN---------------KWTELSSLNFPRIN--------AS-LCIF--NNKIYVVGGDKYEYYINEIEV 507 (534)
T ss_pred ccceEEEecCCCC---------------ceeeCCCCCccccc--------ce-EEEE--CCEEEEEcCCcCCcccceeEE
Confidence 123677776656 89988765532211 11 1122 34455542 347999
Q ss_pred EECCCCeEEEecc
Q 043460 333 YHLKTNKMELFST 345 (368)
Q Consensus 333 ydl~t~~~~~v~~ 345 (368)
||+++++|+.+..
T Consensus 508 yd~~~~~W~~~~~ 520 (534)
T PHA03098 508 YDDKTNTWTLFCK 520 (534)
T ss_pred EeCCCCEEEecCC
Confidence 9999999998876
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.05 E-value=2.8e-08 Score=97.63 Aligned_cols=179 Identities=12% Similarity=0.077 Sum_probs=115.5
Q ss_pred eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeee
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFY 195 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~ 195 (368)
..+..+||.+++|..+|+++..... .+.+. -+-+|+.++.......++.|+..+++|...+.+..+ . .
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~--~~~v~-----~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~---r--~ 354 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLY--ASGVP-----ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP---R--C 354 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhc--ceEEE-----ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC---C--c
Confidence 4577899999999999988743321 22221 123566666543345689999999999988754221 1 2
Q ss_pred ccceEEEeCCeEEEEEe----CCeEEEEEcCCCeEEEEE-eCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccC
Q 043460 196 VLQSVYSRGGILYNLTY----RSTILRYNIEALSEAEII-EVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 196 ~~~~v~~~~G~lywl~~----~~~il~fD~~~~~~~~~~-~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
...++.+ +|.||.+++ ...+..||+.+++|+ .+ ++|.... ...++..+|+|++++.. .+++-. .
T Consensus 355 ~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~-~~~~m~~~r~----~~~~~~~~~~IYv~GG~---~e~ydp--~ 423 (480)
T PHA02790 355 NPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQ-FGPSTYYPHY----KSCALVFGRRLFLVGRN---AEFYCE--S 423 (480)
T ss_pred ccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEE-eCCCCCCccc----cceEEEECCEEEEECCc---eEEecC--C
Confidence 3346788 999999987 245789999999999 54 3443322 23566789999999752 233222 2
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC-------CeEEEEECCCCeEEEe
Q 043460 271 RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC-------DMIYRYHLKTNKMELF 343 (368)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~ydl~t~~~~~v 343 (368)
.+ +|+.+..++.+... .. .++. ++.||+.++ ..+.+||+++++|+..
T Consensus 424 ~~---------------~W~~~~~m~~~r~~--------~~-~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 424 SN---------------TWTLIDDPIYPRDN--------PE-LIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CC---------------cEeEcCCCCCCccc--------cE-EEEE--CCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 34 89988776532211 11 1222 345666522 4689999999999754
No 11
>PLN02153 epithiospecifier protein
Probab=99.01 E-value=7.6e-08 Score=90.58 Aligned_cols=199 Identities=12% Similarity=0.021 Sum_probs=115.8
Q ss_pred eeEEEEcccCccceecCCCCcCCC--CCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCC
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVL--ASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRR 190 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~--~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~ 190 (368)
..++++||.+++|..+|+...... ...+..+.- +-+|+.++... ....+++|+.++++|+..+.+.....
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-----~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~ 124 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-----GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGG 124 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-----CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCC
Confidence 468999999999999886532111 111222211 22455554432 23478999999999998764311111
Q ss_pred ceeeeccceEEEeCCeEEEEEeC------------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC
Q 043460 191 PVSFYVLQSVYSRGGILYNLTYR------------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN 258 (368)
Q Consensus 191 p~~~~~~~~v~~~~G~lywl~~~------------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~ 258 (368)
|.......++.. ++.||.+++. ..+.+||+.+.+|. .++.+...........++..+|+|+++...
T Consensus 125 p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~-~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 202 (341)
T PLN02153 125 PEARTFHSMASD-ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV-QLPDPGENFEKRGGAGFAVVQGKIWVVYGF 202 (341)
T ss_pred CCCceeeEEEEE-CCEEEEECCccCCCccCCCcccceEEEEECCCCeEe-eCCCCCCCCCCCCcceEEEECCeEEEEecc
Confidence 222123346777 9999999871 25889999999999 554322111111123456789999998652
Q ss_pred C----------C-eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee-eccccccCccccceEEEEEecCCCEEEEee
Q 043460 259 Q----------S-TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC-MDEWGNKLHVFGLTRFYNIHPNSDIIFLGS 326 (368)
Q Consensus 259 ~----------~-~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 326 (368)
. . .-.+++++-... +|+++.... .+. ... .. ++..-++.||+..
T Consensus 203 ~~~~~~gG~~~~~~~~v~~yd~~~~---------------~W~~~~~~g~~P~-~r~------~~--~~~~~~~~iyv~G 258 (341)
T PLN02153 203 ATSILPGGKSDYESNAVQFFDPASG---------------KWTEVETTGAKPS-ARS------VF--AHAVVGKYIIIFG 258 (341)
T ss_pred ccccccCCccceecCceEEEEcCCC---------------cEEeccccCCCCC-Ccc------ee--eeEEECCEEEEEC
Confidence 1 0 124666665555 899986542 111 110 01 1111234455542
Q ss_pred C----------------CeEEEEECCCCeEEEecc
Q 043460 327 C----------------DMIYRYHLKTNKMELFST 345 (368)
Q Consensus 327 ~----------------~~~~~ydl~t~~~~~v~~ 345 (368)
+ ..+++||+++++|+++..
T Consensus 259 G~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 259 GEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred cccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 1 268999999999999864
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.85 E-value=1.2e-06 Score=82.58 Aligned_cols=209 Identities=12% Similarity=0.072 Sum_probs=120.8
Q ss_pred CcEEEEeecCCCeeEEEEcc--cCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---------CCcEEEEE
Q 043460 104 NGLILLGSSLSKHRYYVCNP--LTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---------MDPEVDIF 172 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP--~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---------~~~~~~vy 172 (368)
++-|.+........++++|+ .+++|..+|+++.... ..++++.- +-+|+.++... ....+++|
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R-~~~~~~~~-----~~~iYv~GG~~~~~~~~~~~~~~~v~~Y 90 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPR-NQAVAAAI-----DGKLYVFGGIGKANSEGSPQVFDDVYRY 90 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCc-ccceEEEE-----CCEEEEEeCCCCCCCCCcceecccEEEE
Confidence 44444433223356778874 7889999998763111 11222211 12555555432 12468999
Q ss_pred eCCCCCceeccccCCCCCceeeeccceE-EEeCCeEEEEEeC--------------------------------------
Q 043460 173 SSENKTWITRKVSVKPRRPVSFYVLQSV-YSRGGILYNLTYR-------------------------------------- 213 (368)
Q Consensus 173 ss~~~~W~~~~~~~~~~~p~~~~~~~~v-~~~~G~lywl~~~-------------------------------------- 213 (368)
+..+++|+..+...+ .......++ .+ +|.||.+++.
T Consensus 91 d~~~~~W~~~~~~~p----~~~~~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (346)
T TIGR03547 91 DPKKNSWQKLDTRSP----VGLLGASGFSLH-NGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF 165 (346)
T ss_pred ECCCCEEecCCCCCC----CcccceeEEEEe-CCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence 999999999863211 221222234 67 9999999762
Q ss_pred --CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC----CeEEEEEEc--cCCCCCCCCCCccCCCC
Q 043460 214 --STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ----STLLIWQLD--DHRHHSNSHGSNKAASG 285 (368)
Q Consensus 214 --~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~----~~~~IW~l~--~~~~~~~~~~~~~~~~~ 285 (368)
..+.+||+.+.+|+..-++|..... ...++..+|+|+++.... ....+|..+ ..+.
T Consensus 166 ~~~~v~~YDp~t~~W~~~~~~p~~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~------------- 229 (346)
T TIGR03547 166 WNKNVLSYDPSTNQWRNLGENPFLGTA---GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKL------------- 229 (346)
T ss_pred ccceEEEEECCCCceeECccCCCCcCC---CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCc-------------
Confidence 4689999999999933345532111 335677899999998731 224455544 3344
Q ss_pred CCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC------------------------CeEEEEECCCCeEE
Q 043460 286 ARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC------------------------DMIYRYHLKTNKME 341 (368)
Q Consensus 286 ~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------------------------~~~~~ydl~t~~~~ 341 (368)
+|+.+..|+.+...... ......++. -++.||+..+ ..+.+||+++++|+
T Consensus 230 --~W~~~~~m~~~r~~~~~---~~~~~~a~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~ 303 (346)
T TIGR03547 230 --EWNKLPPLPPPKSSSQE---GLAGAFAGI-SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWS 303 (346)
T ss_pred --eeeecCCCCCCCCCccc---cccEEeeeE-ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccc
Confidence 89998877632211000 000111111 1344555421 14679999999999
Q ss_pred Eecc
Q 043460 342 LFST 345 (368)
Q Consensus 342 ~v~~ 345 (368)
.+..
T Consensus 304 ~~~~ 307 (346)
T TIGR03547 304 KVGK 307 (346)
T ss_pred ccCC
Confidence 8876
No 13
>PLN02193 nitrile-specifier protein
Probab=98.80 E-value=7.6e-07 Score=87.36 Aligned_cols=198 Identities=11% Similarity=0.030 Sum_probs=118.1
Q ss_pred eeEEEEcccCccceecCCCCc--CCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCC
Q 043460 116 HRYYVCNPLTKQCVAIPKARE--DVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRR 190 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~--~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~ 190 (368)
..++++||.+++|..+|+... ......+.++.. .-+++.+.... ....+++|++.+++|+....+.. .
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~-----~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~--~ 265 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI-----GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEE--G 265 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE-----CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCC--C
Confidence 358899999999998875321 111111222211 11344444322 23578999999999998764311 1
Q ss_pred ceeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC--CeE
Q 043460 191 PVSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ--STL 262 (368)
Q Consensus 191 p~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~--~~~ 262 (368)
|..-....++.+ ++.||.+.+ ...+.+||+.+.+|+ .++.|...........++..+|+++++.... ..-
T Consensus 266 P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~ 343 (470)
T PLN02193 266 PTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVD 343 (470)
T ss_pred CCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccC
Confidence 111122345678 999999986 245789999999999 6665432211111335667799999887632 124
Q ss_pred EEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC---------------
Q 043460 263 LIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC--------------- 327 (368)
Q Consensus 263 ~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------------- 327 (368)
.+|+++-.++ +|+++..+........ ..-.++. ++.||+...
T Consensus 344 dv~~yD~~t~---------------~W~~~~~~g~~P~~R~------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~ 400 (470)
T PLN02193 344 DVHYYDPVQD---------------KWTQVETFGVRPSERS------VFASAAV--GKHIVIFGGEIAMDPLAHVGPGQL 400 (470)
T ss_pred ceEEEECCCC---------------EEEEeccCCCCCCCcc------eeEEEEE--CCEEEEECCccCCccccccCccce
Confidence 6777777666 8999876531111111 1111122 334555411
Q ss_pred -CeEEEEECCCCeEEEecc
Q 043460 328 -DMIYRYHLKTNKMELFST 345 (368)
Q Consensus 328 -~~~~~ydl~t~~~~~v~~ 345 (368)
..+++||++|++|+++..
T Consensus 401 ~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 401 TDGTFALDTETLQWERLDK 419 (470)
T ss_pred eccEEEEEcCcCEEEEccc
Confidence 258999999999999875
No 14
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.78 E-value=6.3e-09 Score=67.68 Aligned_cols=39 Identities=18% Similarity=0.492 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460 4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI 42 (368)
Q Consensus 4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f 42 (368)
..||+|++.+||+.||++++.+++.|||+|+.++.++.+
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 479999999999999999999999999999999988743
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.76 E-value=3.1e-06 Score=79.06 Aligned_cols=148 Identities=11% Similarity=0.057 Sum_probs=90.1
Q ss_pred eEEEE-cccCc-cceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCc----eeccccCC
Q 043460 117 RYYVC-NPLTK-QCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTW----ITRKVSVK 187 (368)
Q Consensus 117 ~~~v~-NP~T~-~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W----~~~~~~~~ 187 (368)
.++++ +|..+ +|..+++++...... .+..++ =+|+.+.... ....++.|+..++.| +..+..
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~-~~~~~~------~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~l-- 110 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYG-ASVSVE------NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNL-- 110 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccce-EEEEEC------CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCC--
Confidence 46666 45433 788888766332111 111211 2355554332 235788899999998 333321
Q ss_pred CCCceeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEe-CCCCCCCCCCceeEEeeCCeEEEEEECC-
Q 043460 188 PRRPVSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIE-VPDKNNHPCDSEVIGLCKGALNYASRNQ- 259 (368)
Q Consensus 188 ~~~p~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~-lP~~~~~~~~~~~l~~~~G~L~~~~~~~- 259 (368)
|.......++.+ +|.||.+.+ ...+.+||+.+.+|+ .++ +|..... ...++..+++|+++...+
T Consensus 111 ---p~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~~r~---~~~~~~~~~~iYv~GG~~~ 182 (323)
T TIGR03548 111 ---PFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWF-ELPDFPGEPRV---QPVCVKLQNELYVFGGGSN 182 (323)
T ss_pred ---CcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCee-ECCCCCCCCCC---cceEEEECCEEEEEcCCCC
Confidence 222223446778 999999986 247999999999999 553 6643222 335567899999998732
Q ss_pred -CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee
Q 043460 260 -STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC 296 (368)
Q Consensus 260 -~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~ 296 (368)
....++..+-.++ +|+.+..+.
T Consensus 183 ~~~~~~~~yd~~~~---------------~W~~~~~~~ 205 (323)
T TIGR03548 183 IAYTDGYKYSPKKN---------------QWQKVADPT 205 (323)
T ss_pred ccccceEEEecCCC---------------eeEECCCCC
Confidence 2235566665555 899877653
No 16
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.71 E-value=1.5e-08 Score=63.77 Aligned_cols=38 Identities=34% Similarity=0.644 Sum_probs=35.7
Q ss_pred CCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCchh
Q 043460 6 LSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIP 43 (368)
Q Consensus 6 LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f~ 43 (368)
||+|++.+||.+|+++++.++++|||+|+.++.++.+-
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 79999999999999999999999999999999987654
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.70 E-value=3.7e-06 Score=80.22 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=100.3
Q ss_pred cCCcEEEEeecCCCeeEEEEccc--CccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCC---------CcEEE
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPL--TKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARM---------DPEVD 170 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~--T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~---------~~~~~ 170 (368)
..++-|.+........++++++. +++|..+|+++.... ..++.+.- +-+|+.++.... ...++
T Consensus 36 ~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r-~~~~~v~~-----~~~IYV~GG~~~~~~~~~~~~~~~v~ 109 (376)
T PRK14131 36 IDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPR-EQAVAAFI-----DGKLYVFGGIGKTNSEGSPQVFDDVY 109 (376)
T ss_pred EECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCc-ccceEEEE-----CCEEEEEcCCCCCCCCCceeEcccEE
Confidence 34555555433234457787765 588999987652111 11222211 123444443211 24689
Q ss_pred EEeCCCCCceeccccCCCCCceeeeccceEE-EeCCeEEEEEeC------------------------------------
Q 043460 171 IFSSENKTWITRKVSVKPRRPVSFYVLQSVY-SRGGILYNLTYR------------------------------------ 213 (368)
Q Consensus 171 vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~-~~~G~lywl~~~------------------------------------ 213 (368)
+|+..+++|+..+... |.......++. . +|.||.+++.
T Consensus 110 ~YD~~~n~W~~~~~~~----p~~~~~~~~~~~~-~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (376)
T PRK14131 110 KYDPKTNSWQKLDTRS----PVGLAGHVAVSLH-NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED 184 (376)
T ss_pred EEeCCCCEEEeCCCCC----CCcccceEEEEee-CCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence 9999999999987321 22222233444 7 9999999862
Q ss_pred ----CeEEEEEcCCCeEEEEE-eCCCCCCCCCCceeEEeeCCeEEEEEEC----CCeEEEEEEcc--CCCCCCCCCCccC
Q 043460 214 ----STILRYNIEALSEAEII-EVPDKNNHPCDSEVIGLCKGALNYASRN----QSTLLIWQLDD--HRHHSNSHGSNKA 282 (368)
Q Consensus 214 ----~~il~fD~~~~~~~~~~-~lP~~~~~~~~~~~l~~~~G~L~~~~~~----~~~~~IW~l~~--~~~~~~~~~~~~~ 282 (368)
..+.+||+.+.+|+ .+ ++|..... ...++..+++|+++... .....+|..+- .+.
T Consensus 185 ~~~~~~v~~YD~~t~~W~-~~~~~p~~~~~---~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~---------- 250 (376)
T PRK14131 185 YFFNKEVLSYDPSTNQWK-NAGESPFLGTA---GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNL---------- 250 (376)
T ss_pred cCcCceEEEEECCCCeee-ECCcCCCCCCC---cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCc----------
Confidence 35899999999999 54 45542211 23566779999999872 23456665543 344
Q ss_pred CCCCCceEEEEEeee
Q 043460 283 ASGARSWILKHSICM 297 (368)
Q Consensus 283 ~~~~~~W~~~~~i~~ 297 (368)
+|+++..|+.
T Consensus 251 -----~W~~~~~~p~ 260 (376)
T PRK14131 251 -----KWQKLPDLPP 260 (376)
T ss_pred -----ceeecCCCCC
Confidence 8999887763
No 18
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.60 E-value=2.8e-08 Score=64.94 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCchhhh
Q 043460 4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRI 45 (368)
Q Consensus 4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f~~~ 45 (368)
..||+|++.+||.+|+++++++++.|||+|+.+++++.+-..
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 369999999999999999999999999999999998766443
No 19
>PHA03098 kelch-like protein; Provisional
Probab=98.57 E-value=3.4e-06 Score=84.35 Aligned_cols=185 Identities=10% Similarity=0.025 Sum_probs=114.9
Q ss_pred eEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC----CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 117 RYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR----MDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 117 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~----~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
.+.-+|+.+++|..++..+.... ++.+. -+-+|+.++... ....+..|+..+++|...+.+..+ .
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---R 333 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYC---FGSVV-----LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP---R 333 (534)
T ss_pred eeeecchhhhhcccccCcccccc---ceEEE-----ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc---c
Confidence 45567888999998876552111 11111 122344444322 123688999999999887643221 1
Q ss_pred eeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC--CC--eE
Q 043460 193 SFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN--QS--TL 262 (368)
Q Consensus 193 ~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~--~~--~~ 262 (368)
.....+.+ +|.+|.+++ ...+..||+.+.+|+..-++|.... ....+..+|+|++++.. .. .-
T Consensus 334 --~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~----~~~~~~~~~~iYv~GG~~~~~~~~~ 406 (534)
T PHA03098 334 --KNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY----NPCVVNVNNLIYVIGGISKNDELLK 406 (534)
T ss_pred --ccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc----cceEEEECCEEEEECCcCCCCcccc
Confidence 23346788 999999987 2468899999999993334554432 23556789999999872 11 13
Q ss_pred EEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee----------CCeEEE
Q 043460 263 LIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS----------CDMIYR 332 (368)
Q Consensus 263 ~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------~~~~~~ 332 (368)
.++..+-.++ +|+....++..... .. ++. .++.||+.+ ...+.+
T Consensus 407 ~v~~yd~~t~---------------~W~~~~~~p~~r~~--------~~--~~~-~~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 407 TVECFSLNTN---------------KWSKGSPLPISHYG--------GC--AIY-HDGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred eEEEEeCCCC---------------eeeecCCCCccccC--------ce--EEE-ECCEEEEECCccCCCCCcccceEEE
Confidence 4566665555 89987765532211 01 112 234566652 124999
Q ss_pred EECCCCeEEEecc
Q 043460 333 YHLKTNKMELFST 345 (368)
Q Consensus 333 ydl~t~~~~~v~~ 345 (368)
||+++++|+++..
T Consensus 461 yd~~~~~W~~~~~ 473 (534)
T PHA03098 461 YNPVTNKWTELSS 473 (534)
T ss_pred ecCCCCceeeCCC
Confidence 9999999999875
No 20
>PLN02153 epithiospecifier protein
Probab=98.54 E-value=1.2e-05 Score=75.73 Aligned_cols=153 Identities=8% Similarity=0.041 Sum_probs=94.8
Q ss_pred eeEEEEcccCccceecCCCCcC---CCCCCCeeEEcCCCCCCeEEEEEEEeC---------CCcEEEEEeCCCCCceecc
Q 043460 116 HRYYVCNPLTKQCVAIPKARED---VLASPPALAFHPCDSSHYKIIRFLRAR---------MDPEVDIFSSENKTWITRK 183 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~---~~~~~~~l~~d~~~~~~ykvv~~~~~~---------~~~~~~vyss~~~~W~~~~ 183 (368)
..++++||.|++|..+|+++.. .....++.... +=|++.++... ....+++|+.++++|+..+
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD-----ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE-----CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC
Confidence 4688999999999999865210 00111122211 11344444322 1236899999999999876
Q ss_pred ccCCCCCceeeeccceEEEeCCeEEEEEe--------------CCeEEEEEcCCCeEEEEEe----CCCCCCCCCCceeE
Q 043460 184 VSVKPRRPVSFYVLQSVYSRGGILYNLTY--------------RSTILRYNIEALSEAEIIE----VPDKNNHPCDSEVI 245 (368)
Q Consensus 184 ~~~~~~~p~~~~~~~~v~~~~G~lywl~~--------------~~~il~fD~~~~~~~~~~~----lP~~~~~~~~~~~l 245 (368)
..... |..-.....+.+ +|.+|.+.+ ...+.+||+.+.+|+ .++ +|.... ....
T Consensus 176 ~~~~~--~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~-~~~~~g~~P~~r~----~~~~ 247 (341)
T PLN02153 176 DPGEN--FEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT-EVETTGAKPSARS----VFAH 247 (341)
T ss_pred CCCCC--CCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCCcEE-eccccCCCCCCcc----eeee
Confidence 43110 111112235678 999999864 146899999999999 654 343322 2345
Q ss_pred EeeCCeEEEEEECC----------Ce--EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee
Q 043460 246 GLCKGALNYASRNQ----------ST--LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC 296 (368)
Q Consensus 246 ~~~~G~L~~~~~~~----------~~--~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~ 296 (368)
+..+++|++++... .. -.+|.++-.++ .|+.+....
T Consensus 248 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~---------------~W~~~~~~~ 295 (341)
T PLN02153 248 AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL---------------VWEKLGECG 295 (341)
T ss_pred EEECCEEEEECcccCCccccccccccccccEEEEEcCcc---------------EEEeccCCC
Confidence 67789999998731 11 27899998777 899876543
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=98.53 E-value=4.2e-06 Score=82.35 Aligned_cols=139 Identities=10% Similarity=0.009 Sum_probs=91.9
Q ss_pred EecCCcEEEEeec-CCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC-CCcEEEEEeCCCC
Q 043460 100 IDCCNGLILLGSS-LSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR-MDPEVDIFSSENK 177 (368)
Q Consensus 100 ~~s~~Glll~~~~-~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~-~~~~~~vyss~~~ 177 (368)
.++.+|.|.+.++ .....+..+||.+++|..+|+++..... ..+..+ +-+|+.++... ....+++|+++++
T Consensus 314 ~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~------~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 314 GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASI------NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred EEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEE------CCEEEEecCcCCCCccEEEEeCCCC
Confidence 3446676665543 1234577899999999999998743321 111121 23555554432 2356899999999
Q ss_pred CceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEE
Q 043460 178 TWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASR 257 (368)
Q Consensus 178 ~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~ 257 (368)
.|+..+.+..+ . ....++.+ +|.||.++ +...+||+.+++|+..-++|.... ...++..+|+|++++.
T Consensus 387 ~W~~~~~m~~~---r--~~~~~~~~-~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~----~~~~~v~~~~IYviGG 454 (480)
T PHA02790 387 QWQFGPSTYYP---H--YKSCALVF-GRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRD----NPELIIVDNKLLLIGG 454 (480)
T ss_pred EEEeCCCCCCc---c--ccceEEEE-CCEEEEEC--CceEEecCCCCcEeEcCCCCCCcc----ccEEEEECCEEEEECC
Confidence 99998754321 1 22346778 99999997 357889999999993334544322 3467888999999987
No 22
>PLN02193 nitrile-specifier protein
Probab=98.50 E-value=3.8e-05 Score=75.48 Aligned_cols=154 Identities=11% Similarity=0.057 Sum_probs=97.4
Q ss_pred CeeEEEEcccCccceecCCCCcC-CCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCC
Q 043460 115 KHRYYVCNPLTKQCVAIPKARED-VLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRR 190 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~lP~~~~~-~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~ 190 (368)
...++++||.|++|..++++... .....+..... .-+++.+.... ....+++|+..+++|+..+.. ...
T Consensus 243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-----~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~--~~~ 315 (470)
T PLN02193 243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-----EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTP--GDS 315 (470)
T ss_pred CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-----CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCC--CCC
Confidence 35789999999999999775210 00111222211 22455554432 235689999999999987632 111
Q ss_pred ceeeeccceEEEeCCeEEEEEe-----CCeEEEEEcCCCeEEEEEeC----CCCCCCCCCceeEEeeCCeEEEEEECC--
Q 043460 191 PVSFYVLQSVYSRGGILYNLTY-----RSTILRYNIEALSEAEIIEV----PDKNNHPCDSEVIGLCKGALNYASRNQ-- 259 (368)
Q Consensus 191 p~~~~~~~~v~~~~G~lywl~~-----~~~il~fD~~~~~~~~~~~l----P~~~~~~~~~~~l~~~~G~L~~~~~~~-- 259 (368)
|..-.....+.+ +|.+|.+.+ ...+.+||+.+.+|+ .++. |.... ....+..+++|+++....
T Consensus 316 ~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~-~~~~~g~~P~~R~----~~~~~~~~~~iyv~GG~~~~ 389 (470)
T PLN02193 316 FSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKWT-QVETFGVRPSERS----VFASAAVGKHIVIFGGEIAM 389 (470)
T ss_pred CCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCCEEE-EeccCCCCCCCcc----eeEEEEECCEEEEECCccCC
Confidence 111112335778 999999876 257999999999999 5532 32221 234567789999988731
Q ss_pred --------CeE--EEEEEccCCCCCCCCCCccCCCCCCceEEEEEee
Q 043460 260 --------STL--LIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC 296 (368)
Q Consensus 260 --------~~~--~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~ 296 (368)
..+ .+|.++-.+. +|+.+..+.
T Consensus 390 ~~~~~~~~~~~~ndv~~~D~~t~---------------~W~~~~~~~ 421 (470)
T PLN02193 390 DPLAHVGPGQLTDGTFALDTETL---------------QWERLDKFG 421 (470)
T ss_pred ccccccCccceeccEEEEEcCcC---------------EEEEcccCC
Confidence 112 5899998777 899887654
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.39 E-value=6.9e-05 Score=71.53 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=55.4
Q ss_pred cEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeC---------CeEEEEEcCCCeEEEEEeCCCCCC
Q 043460 167 PEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR---------STILRYNIEALSEAEIIEVPDKNN 237 (368)
Q Consensus 167 ~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~---------~~il~fD~~~~~~~~~~~lP~~~~ 237 (368)
..+++|+..++.|+..+..+.. .......+.+ ++.||.+++. .....||+.+.+|..+.++|....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~----~~~~~a~v~~-~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~ 263 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFL----GTAGSAVVIK-GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPG 263 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCC----CCCcceEEEE-CCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCc
Confidence 4699999999999987743211 1112235677 9999999861 234567888999983445665332
Q ss_pred CC-C---CceeEEeeCCeEEEEEE
Q 043460 238 HP-C---DSEVIGLCKGALNYASR 257 (368)
Q Consensus 238 ~~-~---~~~~l~~~~G~L~~~~~ 257 (368)
.. . .....+..+|+|++++.
T Consensus 264 ~~~~~~~~~~~a~~~~~~iyv~GG 287 (376)
T PRK14131 264 GSSQEGVAGAFAGYSNGVLLVAGG 287 (376)
T ss_pred CCcCCccceEeceeECCEEEEeec
Confidence 11 0 01224567999999886
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.33 E-value=4.3e-05 Score=71.34 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=90.2
Q ss_pred ecCCcEEEEeec----CCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC--CCcEEEEEeC
Q 043460 101 DCCNGLILLGSS----LSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR--MDPEVDIFSS 174 (368)
Q Consensus 101 ~s~~Glll~~~~----~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~--~~~~~~vyss 174 (368)
+..+|.|.+... .....++++||.|++|..+|+++...........++ =+|+.+.... ....+++|+.
T Consensus 120 ~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~------~~iYv~GG~~~~~~~~~~~yd~ 193 (323)
T TIGR03548 120 CYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQ------NELYVFGGGSNIAYTDGYKYSP 193 (323)
T ss_pred EEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEEC------CEEEEEcCCCCccccceEEEec
Confidence 344666655443 123578999999999999987653211111111111 2455554432 1235789999
Q ss_pred CCCCceeccccCCCCCceeeeccce-EEEeCCeEEEEEeC--------------------------------------Ce
Q 043460 175 ENKTWITRKVSVKPRRPVSFYVLQS-VYSRGGILYNLTYR--------------------------------------ST 215 (368)
Q Consensus 175 ~~~~W~~~~~~~~~~~p~~~~~~~~-v~~~~G~lywl~~~--------------------------------------~~ 215 (368)
++++|+....+.....|.......+ +.. +|.||.+++. ..
T Consensus 194 ~~~~W~~~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (323)
T TIGR03548 194 KKNQWQKVADPTTDSEPISLLGAASIKIN-ESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRK 272 (323)
T ss_pred CCCeeEECCCCCCCCCceeccceeEEEEC-CCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCce
Confidence 9999999875422122333222333 445 7899998762 35
Q ss_pred EEEEEcCCCeEEEEEe-CCCCCCCCCCceeEEeeCCeEEEEEEC
Q 043460 216 ILRYNIEALSEAEIIE-VPDKNNHPCDSEVIGLCKGALNYASRN 258 (368)
Q Consensus 216 il~fD~~~~~~~~~~~-lP~~~~~~~~~~~l~~~~G~L~~~~~~ 258 (368)
+++||+.+++|+ .+. +|..... ...++..+++|+++...
T Consensus 273 v~~yd~~~~~W~-~~~~~p~~~r~---~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 273 ILIYNVRTGKWK-SIGNSPFFARC---GAALLLTGNNIFSINGE 312 (323)
T ss_pred EEEEECCCCeee-EcccccccccC---chheEEECCEEEEEecc
Confidence 999999999999 554 5422111 33577889999999873
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.24 E-value=0.00029 Score=66.44 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=54.0
Q ss_pred cEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeC-------CeEEEEE--cCCCeEEEEEeCCCCCC
Q 043460 167 PEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR-------STILRYN--IEALSEAEIIEVPDKNN 237 (368)
Q Consensus 167 ~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~-------~~il~fD--~~~~~~~~~~~lP~~~~ 237 (368)
..+++|++.+++|+..+.++.. .......+.+ +|+||.+.+. ..+..|| +.+.+|+...++|....
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~----~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~ 242 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFL----GTAGSAIVHK-GNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKS 242 (346)
T ss_pred ceEEEEECCCCceeECccCCCC----cCCCceEEEE-CCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCC
Confidence 5799999999999998754211 1112335677 9999999861 2244454 56679983445554321
Q ss_pred C---CCCceeEEeeCCeEEEEEE
Q 043460 238 H---PCDSEVIGLCKGALNYASR 257 (368)
Q Consensus 238 ~---~~~~~~l~~~~G~L~~~~~ 257 (368)
. .......+..+|+|++++.
T Consensus 243 ~~~~~~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 243 SSQEGLAGAFAGISNGVLLVAGG 265 (346)
T ss_pred CccccccEEeeeEECCEEEEeec
Confidence 1 0002235678999999987
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.80 E-value=0.00059 Score=59.73 Aligned_cols=202 Identities=13% Similarity=0.123 Sum_probs=115.8
Q ss_pred CCeeEEEEcccCccceecCCCCcC----CCCCC-CeeEEcCCCCCCe--EEEEEEEeC----CCcEEEEEeCCCCCceec
Q 043460 114 SKHRYYVCNPLTKQCVAIPKARED----VLASP-PALAFHPCDSSHY--KIIRFLRAR----MDPEVDIFSSENKTWITR 182 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~----~~~~~-~~l~~d~~~~~~y--kvv~~~~~~----~~~~~~vyss~~~~W~~~ 182 (368)
++-.+.+.|-.+-+|.++|+--.. ..+.. ...-|.+. .-.| |++..+.++ .+..+.-|+.+++.|+..
T Consensus 42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHt-vV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p 120 (392)
T KOG4693|consen 42 DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHT-VVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKP 120 (392)
T ss_pred CcceeEEeeccceeEEecCcccccccccCCCCccchhhcCce-EEEEcceEEEEcCccCcccccceeeeecccccccccc
Confidence 556788999999999999983211 11111 11111110 0111 233333332 355677799999999876
Q ss_pred cccCCCCCceeeeccceEEEeCCeEEEEEe--------CCeEEEEEcCCCeEEEEEe---CCCCCCCCCCceeEEeeCCe
Q 043460 183 KVSVKPRRPVSFYVLQSVYSRGGILYNLTY--------RSTILRYNIEALSEAEIIE---VPDKNNHPCDSEVIGLCKGA 251 (368)
Q Consensus 183 ~~~~~~~~p~~~~~~~~v~~~~G~lywl~~--------~~~il~fD~~~~~~~~~~~---lP~~~~~~~~~~~l~~~~G~ 251 (368)
... ...|-.-..+.++++ +..+|-.++ ...+-++|+.|.+|+ .+. .|+.-.+ .-.....+|.
T Consensus 121 ~v~--G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr-~~~Tkg~PprwRD---FH~a~~~~~~ 193 (392)
T KOG4693|consen 121 EVE--GFVPGARDGHSACVW-GNQMYIFGGYEEDAQRFSQDTHVLDFATMTWR-EMHTKGDPPRWRD---FHTASVIDGM 193 (392)
T ss_pred cee--eecCCccCCceeeEE-CcEEEEecChHHHHHhhhccceeEeccceeee-ehhccCCCchhhh---hhhhhhccce
Confidence 532 111122223446777 888998887 478999999999999 664 3433222 2233455788
Q ss_pred EEEEEE--CC----------CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCC
Q 043460 252 LNYASR--NQ----------STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNS 319 (368)
Q Consensus 252 L~~~~~--~~----------~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 319 (368)
+++.+. ++ -.-+|-.|+-..+ .|..-.+-.+-.-+... . -.+.-++
T Consensus 194 MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~---------------aW~r~p~~~~~P~GRRS------H-S~fvYng 251 (392)
T KOG4693|consen 194 MYIFGGRSDESGPFHSIHEQYCDTIMALDLATG---------------AWTRTPENTMKPGGRRS------H-STFVYNG 251 (392)
T ss_pred EEEeccccccCCCccchhhhhcceeEEEecccc---------------ccccCCCCCcCCCcccc------c-ceEEEcc
Confidence 888876 21 1235666666555 78876433322112111 0 1122233
Q ss_pred CEEEEe--------eCCeEEEEECCCCeEEEecc
Q 043460 320 DIIFLG--------SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 320 ~~v~~~--------~~~~~~~ydl~t~~~~~v~~ 345 (368)
.+-++. .-..++.||++|..|..+.-
T Consensus 252 ~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 252 KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred eEEEecccchhhhhhhcceeecccccchheeeec
Confidence 333332 34579999999999999875
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.65 E-value=0.0033 Score=58.48 Aligned_cols=203 Identities=11% Similarity=0.098 Sum_probs=119.6
Q ss_pred eEEEEcccCccceec--CCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC--------CCcEEEEEeCCCCCceeccccC
Q 043460 117 RYYVCNPLTKQCVAI--PKAREDVLASPPALAFHPCDSSHYKIIRFLRAR--------MDPEVDIFSSENKTWITRKVSV 186 (368)
Q Consensus 117 ~~~v~NP~T~~~~~l--P~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~--------~~~~~~vyss~~~~W~~~~~~~ 186 (368)
.+|++|--+.+|+.+ |.+|... +.+..+..|+ + +-.+.-+... ....+.+|++.+..|+.+...-
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pR--sshq~va~~s--~-~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g 173 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPR--SSHQAVAVPS--N-ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG 173 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCC--ccceeEEecc--C-eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence 688999999999997 4333222 2233333331 2 1111111111 3456889999999999987421
Q ss_pred CCCCceeeeccceEEEeCCeEEEEEe----------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEE
Q 043460 187 KPRRPVSFYVLQSVYSRGGILYNLTY----------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYA 255 (368)
Q Consensus 187 ~~~~p~~~~~~~~v~~~~G~lywl~~----------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~ 255 (368)
.|..-..++.|.. ...|.-.++ -+.+.+||+++=+|+ .+..+...........+.+. +|.+++-
T Consensus 174 ---~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~-Klepsga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 174 ---GPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS-KLEPSGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred ---CCCCCccceeEEe-eeeEEEEcceecCCCceEEeeeeEEEeccceeee-eccCCCCCCCCCCcceEEecCCCcEEEE
Confidence 1222222334555 444444443 357999999999999 77665432222224455565 8888887
Q ss_pred EEC------------CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEE
Q 043460 256 SRN------------QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIF 323 (368)
Q Consensus 256 ~~~------------~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 323 (368)
+.. ..+-.+|.|+-..+. .. -..|+++..+.+..-+.. ++. +++++++..++
T Consensus 249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~---------~d-Kw~W~kvkp~g~kPspRs-----gfs-v~va~n~kal~ 312 (521)
T KOG1230|consen 249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGR---------ED-KWVWTKVKPSGVKPSPRS-----GFS-VAVAKNHKALF 312 (521)
T ss_pred cchhHhhhhhhhhcCceeeeeeeecCCcCC---------Cc-ceeEeeccCCCCCCCCCC-----cee-EEEecCCceEE
Confidence 651 123478999876320 11 237888887775433321 222 45677766666
Q ss_pred Ee---e------------CCeEEEEECCCCeEEEecc
Q 043460 324 LG---S------------CDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 324 ~~---~------------~~~~~~ydl~t~~~~~v~~ 345 (368)
+. + ...+|.||+..++|...+.
T Consensus 313 FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 313 FGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred ecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 64 1 3479999999999986544
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.07 E-value=0.0047 Score=54.27 Aligned_cols=151 Identities=14% Similarity=0.170 Sum_probs=92.5
Q ss_pred eeEEEEcccCccceec------CCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccC
Q 043460 116 HRYYVCNPLTKQCVAI------PKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSV 186 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~l------P~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~ 186 (368)
..++-++|-|.+|++. |+..... .+..++ +..-|+.-.... -...+++++..|..|+...+.
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~vPgaRDGH--sAcV~g------n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk- 175 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFVPGARDGH--SACVWG------NQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK- 175 (392)
T ss_pred ceeeeeccccccccccceeeecCCccCCc--eeeEEC------cEEEEecChHHHHHhhhccceeEeccceeeeehhcc-
Confidence 4578899999999862 3332111 111111 111122111111 245678888899999998642
Q ss_pred CCCCceeee-ccceEEEeCCeEEEEEe---------------CCeEEEEEcCCCeEEEEEeCCCCC--CCCCCceeEEee
Q 043460 187 KPRRPVSFY-VLQSVYSRGGILYNLTY---------------RSTILRYNIEALSEAEIIEVPDKN--NHPCDSEVIGLC 248 (368)
Q Consensus 187 ~~~~p~~~~-~~~~v~~~~G~lywl~~---------------~~~il~fD~~~~~~~~~~~lP~~~--~~~~~~~~l~~~ 248 (368)
+.|-.|. .+.++.+ +|.+|-.++ -..|+++|+.|+.|. .. |... .....+-...+.
T Consensus 176 --g~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~-r~--p~~~~~P~GRRSHS~fvY 249 (392)
T KOG4693|consen 176 --GDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWT-RT--PENTMKPGGRRSHSTFVY 249 (392)
T ss_pred --CCCchhhhhhhhhhc-cceEEEeccccccCCCccchhhhhcceeEEEeccccccc-cC--CCCCcCCCcccccceEEE
Confidence 2233444 3557888 999999887 267999999999998 33 2211 111123356688
Q ss_pred CCeEEEEEECCCe-----EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee
Q 043460 249 KGALNYASRNQST-----LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC 296 (368)
Q Consensus 249 ~G~L~~~~~~~~~-----~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~ 296 (368)
+|.+++.+....+ -.+|..+-... .|.++..-.
T Consensus 250 ng~~Y~FGGYng~ln~HfndLy~FdP~t~---------------~W~~I~~~G 287 (392)
T KOG4693|consen 250 NGKMYMFGGYNGTLNVHFNDLYCFDPKTS---------------MWSVISVRG 287 (392)
T ss_pred cceEEEecccchhhhhhhcceeecccccc---------------hheeeeccC
Confidence 9999999873222 36788877655 798876544
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00058 Score=61.09 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460 5 YLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI 42 (368)
Q Consensus 5 ~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f 42 (368)
.||||++..||+-|+.|+|++...|||+|+++-++...
T Consensus 100 slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 100 SLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 69999999999999999999999999999999887653
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.68 E-value=0.12 Score=51.06 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=97.1
Q ss_pred EEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeCC-------eEEEEEcCCCeEEEEEeC----CCCC
Q 043460 168 EVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRS-------TILRYNIEALSEAEIIEV----PDKN 236 (368)
Q Consensus 168 ~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~-------~il~fD~~~~~~~~~~~l----P~~~ 236 (368)
.+.+++..+..|...... ...|..-.....+.+ +..||.+++.. .+-.||+.+.+|. .+.. |+..
T Consensus 89 dl~~~d~~~~~w~~~~~~--g~~p~~r~g~~~~~~-~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~-~l~~~~~~P~~r 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAAT--GDEPSPRYGHSLSAV-GDKLYLFGGTDKKYRNLNELHSLDLSTRTWS-LLSPTGDPPPPR 164 (482)
T ss_pred eeEEeecCCccccccccc--CCCCCcccceeEEEE-CCeEEEEccccCCCCChhheEeccCCCCcEE-EecCcCCCCCCc
Confidence 588888888888876532 222322223346788 99999999843 8999999999999 5542 3332
Q ss_pred CCCCCceeEEeeCCeEEEEEEC----CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEE
Q 043460 237 NHPCDSEVIGLCKGALNYASRN----QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRF 312 (368)
Q Consensus 237 ~~~~~~~~l~~~~G~L~~~~~~----~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~ 312 (368)
. .-.++..+.+|++.+.. +..-.+|+++-... .|.++.+.....-+... +.
T Consensus 165 ~----~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~---------------~W~~~~~~g~~P~pR~g------H~ 219 (482)
T KOG0379|consen 165 A----GHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETS---------------TWSELDTQGEAPSPRYG------HA 219 (482)
T ss_pred c----cceEEEECCEEEEECCccCcccceeeeeeeccccc---------------cceecccCCCCCCCCCC------ce
Confidence 2 23566777888888872 13458899998766 89999887744333221 22
Q ss_pred EEEecCCCEEEEe------eCCeEEEEECCCCeEEEecc
Q 043460 313 YNIHPNSDIIFLG------SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 313 ~~~~~~~~~v~~~------~~~~~~~ydl~t~~~~~v~~ 345 (368)
+.+..+.-+|+.. .-..+..+|+.+.+|.++..
T Consensus 220 ~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~ 258 (482)
T KOG0379|consen 220 MVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPT 258 (482)
T ss_pred EEEECCeEEEEeccccCCceecceEeeecccceeeeccc
Confidence 3334332233332 12469999999999997765
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.32 E-value=0.29 Score=48.28 Aligned_cols=198 Identities=12% Similarity=0.092 Sum_probs=114.5
Q ss_pred eEEEEcccCccceecCCCCcCCC-CCCCeeEEcCCCCCCeEEEEEEEeC----CCcEEEEEeCCCCCceeccccCCCCCc
Q 043460 117 RYYVCNPLTKQCVAIPKAREDVL-ASPPALAFHPCDSSHYKIIRFLRAR----MDPEVDIFSSENKTWITRKVSVKPRRP 191 (368)
Q Consensus 117 ~~~v~NP~T~~~~~lP~~~~~~~-~~~~~l~~d~~~~~~ykvv~~~~~~----~~~~~~vyss~~~~W~~~~~~~~~~~p 191 (368)
.++++|--+..|........... ...+.+. .-+ =+++.++... ....++.|+..++.|+.....-. .|
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~----~~~-~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~--~P 161 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLS----AVG-DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGD--PP 161 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEE----EEC-CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCC--CC
Confidence 59999999988877543321110 0111111 001 2333333321 23489999999999998774321 12
Q ss_pred eeeeccceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC--Ce-
Q 043460 192 VSFYVLQSVYSRGGILYNLTY-------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ--ST- 261 (368)
Q Consensus 192 ~~~~~~~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~--~~- 261 (368)
.....+.++.+ +..+|..++ -..+.+||+.+.+|. .+..............++..+++++++.... ..
T Consensus 162 ~~r~~Hs~~~~-g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~-~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~ 239 (482)
T KOG0379|consen 162 PPRAGHSATVV-GTKLVVFGGIGGTGDSLNDLHIYDLETSTWS-ELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVY 239 (482)
T ss_pred CCcccceEEEE-CCEEEEECCccCcccceeeeeeeccccccce-ecccCCCCCCCCCCceEEEECCeEEEEeccccCCce
Confidence 22233445666 778888776 357999999999999 6654333222222446778888988888732 22
Q ss_pred -EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe---e-----CCeEEE
Q 043460 262 -LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG---S-----CDMIYR 332 (368)
Q Consensus 262 -~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~-----~~~~~~ 332 (368)
=.+|.|+-.+. +|.+..... .++... ......+. ...++++. . -..++.
T Consensus 240 l~D~~~ldl~~~---------------~W~~~~~~g--~~p~~R----~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~ 297 (482)
T KOG0379|consen 240 LNDVHILDLSTW---------------EWKLLPTGG--DLPSPR----SGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYG 297 (482)
T ss_pred ecceEeeecccc---------------eeeeccccC--CCCCCc----ceeeeEEE-CCEEEEEcCCccccccccccccc
Confidence 37899988655 788544333 122111 11222222 22333332 1 346899
Q ss_pred EECCCCeEEEecc
Q 043460 333 YHLKTNKMELFST 345 (368)
Q Consensus 333 ydl~t~~~~~v~~ 345 (368)
||+++..|.++..
T Consensus 298 l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 298 LDLETLVWSKVES 310 (482)
T ss_pred ccccccceeeeec
Confidence 9999999998876
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.16 E-value=0.0045 Score=56.17 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=35.9
Q ss_pred CCC----HHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460 5 YLS----EDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI 42 (368)
Q Consensus 5 ~LP----~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f 42 (368)
.|| +++.+.||+.|...+|..|..|||+|+++++++..
T Consensus 77 ~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~ 118 (499)
T KOG0281|consen 77 ALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML 118 (499)
T ss_pred hcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence 588 99999999999999999999999999999999864
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.06 E-value=0.13 Score=48.20 Aligned_cols=127 Identities=16% Similarity=0.204 Sum_probs=76.2
Q ss_pred eEEEeCCeEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC-----CCe----EEEEE
Q 043460 199 SVYSRGGILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN-----QST----LLIWQ 266 (368)
Q Consensus 199 ~v~~~~G~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~-----~~~----~~IW~ 266 (368)
-+.. +|-+|--.. .+.+.+||..+.+|. .+..|......+....++...|.|.+.+.. +.. -.+|.
T Consensus 81 Lilf-GGEf~ngqkT~vYndLy~Yn~k~~eWk-k~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~ 158 (521)
T KOG1230|consen 81 LILF-GGEFYNGQKTHVYNDLYSYNTKKNEWK-KVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWL 158 (521)
T ss_pred eEEe-cceeecceeEEEeeeeeEEecccccee-EeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheee
Confidence 3444 555554111 567999999999999 777665443322234555566788888762 222 36899
Q ss_pred EccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCcc---ccceEEE-EEec-CCCEEEEeeCCeEEEEECCCCeEE
Q 043460 267 LDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHV---FGLTRFY-NIHP-NSDIIFLGSCDMIYRYHLKTNKME 341 (368)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~---~~~~~~~-~~~~-~~~~v~~~~~~~~~~ydl~t~~~~ 341 (368)
++-... .|+++..-.-+.-.+.+.. ...+.++ ||+. +++.+|+ ..+++||++|-+|+
T Consensus 159 fd~~tr---------------kweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~Yy---NDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 159 FDLKTR---------------KWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYY---NDVYAFDLDTYKWS 220 (521)
T ss_pred eeeccc---------------hheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEe---eeeEEEeccceeee
Confidence 988766 8998764432111111100 0112222 3443 4455555 57999999999999
Q ss_pred Eecc
Q 043460 342 LFST 345 (368)
Q Consensus 342 ~v~~ 345 (368)
++..
T Consensus 221 Klep 224 (521)
T KOG1230|consen 221 KLEP 224 (521)
T ss_pred eccC
Confidence 9987
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.59 E-value=0.0067 Score=54.64 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHcCCC-----chhhHHHhhhhHHHHhhhcCCchhhh
Q 043460 4 IYLSEDLITEILSRLP-----VKSVVGFKIVSKTWNNLISKVCIPRI 45 (368)
Q Consensus 4 ~~LP~Dll~~IL~rLp-----~~~l~r~r~Vck~Wr~li~~~~f~~~ 45 (368)
..||+|+|.+||.++- .++|.++.+|||.|+-..++|.|-+.
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 4799999999998654 59999999999999999999986443
No 35
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.44 E-value=0.38 Score=46.37 Aligned_cols=206 Identities=17% Similarity=0.093 Sum_probs=102.2
Q ss_pred eeEEEEcccCccceecCCCCcC--CCCCCCeeEEcCCCCCCeEEEEEEEe--CCCcEEEEEeCCCCCce--eccccCCCC
Q 043460 116 HRYYVCNPLTKQCVAIPKARED--VLASPPALAFHPCDSSHYKIIRFLRA--RMDPEVDIFSSENKTWI--TRKVSVKPR 189 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~--~~~~~~~l~~d~~~~~~ykvv~~~~~--~~~~~~~vyss~~~~W~--~~~~~~~~~ 189 (368)
.++.|+|-+|++|.. |.-..+ ..+.++||..|. -++++++.. -+...=+.|.+...+|+ .....++..
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdG-----trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~n 130 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDG-----TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKN 130 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCCchhhcceEecC-----ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCC
Confidence 478899999999985 322211 223556777664 244444332 15667778888887764 433222221
Q ss_pred -Cceeeeccce-EEEeCCeEEEEEe-----------------CCeEEEEEcCCCeEEEEEe-----CCCCCCCCCCceeE
Q 043460 190 -RPVSFYVLQS-VYSRGGILYNLTY-----------------RSTILRYNIEALSEAEIIE-----VPDKNNHPCDSEVI 245 (368)
Q Consensus 190 -~p~~~~~~~~-v~~~~G~lywl~~-----------------~~~il~fD~~~~~~~~~~~-----lP~~~~~~~~~~~l 245 (368)
.|-...-+.+ +.+ +.+.|..++ +-+++-+.+..+.....++ +|..... +....-
T Consensus 131 G~pPCPRlGHSFsl~-gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES-HTAViY 208 (830)
T KOG4152|consen 131 GPPPCPRLGHSFSLV-GNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES-HTAVIY 208 (830)
T ss_pred CCCCCCccCceeEEe-ccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccc-ceeEEE
Confidence 1111111223 455 778888776 2345555544543321222 3332221 101122
Q ss_pred EeeCC---eEEEEEE-CCCeE-EEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCcc----------ccce
Q 043460 246 GLCKG---ALNYASR-NQSTL-LIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHV----------FGLT 310 (368)
Q Consensus 246 ~~~~G---~L~~~~~-~~~~~-~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~----------~~~~ 310 (368)
++-|. ++++.+. +..++ .+|.|+-+.- .|.+...-....+++.++- +.+|
T Consensus 209 ~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl---------------~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGW 273 (830)
T KOG4152|consen 209 TEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTL---------------TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGW 273 (830)
T ss_pred EeccCCcceEEEEcccccccccceeEEeccee---------------ecccccccCCCCCCcccccceeecceeEEecce
Confidence 22232 3444443 45554 7899999866 7988654334444443321 0122
Q ss_pred EEEEEecCCCE---EEEeeCCeEEEEECCCCeEEEec
Q 043460 311 RFYNIHPNSDI---IFLGSCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 311 ~~~~~~~~~~~---v~~~~~~~~~~ydl~t~~~~~v~ 344 (368)
.++-.+.-..- -=......+-++|++|.+|+.+-
T Consensus 274 VPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 274 VPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL 310 (830)
T ss_pred eeeeccccccccccceeeeccceeeeeecchheeeee
Confidence 22211100000 00003456889999999998764
No 36
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.27 E-value=1.5 Score=43.74 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCchhh
Q 043460 4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPR 44 (368)
Q Consensus 4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f~~ 44 (368)
..||.++...||..|+.+++++++.||+.|+.+.++...-.
T Consensus 109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 36899999999999999999999999999999999865543
No 37
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.10 E-value=3.7 Score=35.82 Aligned_cols=190 Identities=13% Similarity=0.129 Sum_probs=100.4
Q ss_pred CCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC--ce
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT--WI 180 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~--W~ 180 (368)
.+|.+++.. ....++.+|+.||+...--..+.... ..... .+-+|+.... ...+..++..+|. |+
T Consensus 35 ~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~~~~~~--~~~~~------~~~~v~v~~~---~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 35 DGGRVYVAS--GDGNLYALDAKTGKVLWRFDLPGPIS--GAPVV------DGGRVYVGTS---DGSLYALDAKTGKVLWS 101 (238)
T ss_dssp ETTEEEEEE--TTSEEEEEETTTSEEEEEEECSSCGG--SGEEE------ETTEEEEEET---TSEEEEEETTTSCEEEE
T ss_pred eCCEEEEEc--CCCEEEEEECCCCCEEEEeecccccc--ceeee------cccccccccc---eeeeEecccCCcceeee
Confidence 577777764 67799999999998765332221111 00111 1223333321 2367778877875 88
Q ss_pred e-ccccCCCCCceeeecc-ceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCC------CCceeEEeeCCeE
Q 043460 181 T-RKVSVKPRRPVSFYVL-QSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHP------CDSEVIGLCKGAL 252 (368)
Q Consensus 181 ~-~~~~~~~~~p~~~~~~-~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~------~~~~~l~~~~G~L 252 (368)
. .... +. ...... ..... ++.+|.....+.|.++|+.+++-....+.+...... .....+...+|.+
T Consensus 102 ~~~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (238)
T PF13360_consen 102 IYLTSS-PP---AGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRV 176 (238)
T ss_dssp EEE-SS-CT---CSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEE
T ss_pred eccccc-cc---cccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEE
Confidence 4 4321 11 111222 23444 677777776899999999988664344443211110 0012333446755
Q ss_pred EEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEE-EecCCCEEEEee-CCeE
Q 043460 253 NYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYN-IHPNSDIIFLGS-CDMI 330 (368)
Q Consensus 253 ~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~-~~~~ 330 (368)
++...+...+.+ -+..... .|+.. +.- . .+ ....++.+|+.. ...+
T Consensus 177 ~~~~~~g~~~~~-d~~tg~~---------------~w~~~--~~~--~------------~~~~~~~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 177 YVSSGDGRVVAV-DLATGEK---------------LWSKP--ISG--I------------YSLPSVDGGTLYVTSSDGRL 224 (238)
T ss_dssp EEECCTSSEEEE-ETTTTEE---------------EEEEC--SS---E------------CECEECCCTEEEEEETTTEE
T ss_pred EEEcCCCeEEEE-ECCCCCE---------------EEEec--CCC--c------------cCCceeeCCEEEEEeCCCEE
Confidence 555544442333 2222111 46332 221 1 11 334678888874 7899
Q ss_pred EEEECCCCeEEE
Q 043460 331 YRYHLKTNKMEL 342 (368)
Q Consensus 331 ~~ydl~t~~~~~ 342 (368)
+++|++|++...
T Consensus 225 ~~~d~~tG~~~W 236 (238)
T PF13360_consen 225 YALDLKTGKVVW 236 (238)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEECCCCCEEe
Confidence 999999999643
No 38
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=93.47 E-value=0.73 Score=36.67 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=53.6
Q ss_pred CCeEEEEEcCCC--eEEEEEeCCCCCCCC----------CCceeEEeeCCeEEEEEEC----------CCeEEEEEEccC
Q 043460 213 RSTILRYNIEAL--SEAEIIEVPDKNNHP----------CDSEVIGLCKGALNYASRN----------QSTLLIWQLDDH 270 (368)
Q Consensus 213 ~~~il~fD~~~~--~~~~~~~lP~~~~~~----------~~~~~l~~~~G~L~~~~~~----------~~~~~IW~l~~~ 270 (368)
..+|+..|+-.+ .++ .+++|...... .....++..+|+|.++... +..+.+|.|...
T Consensus 5 ~~GIL~CD~~~~~p~l~-~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~ 83 (131)
T PF07762_consen 5 WRGILFCDVFDDSPVLR-FVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDP 83 (131)
T ss_pred CCCEEEEECCCCCccEE-EEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccC
Confidence 356788888876 667 89999764221 1245677899999999872 225899999984
Q ss_pred ---CCCCCCCCCccCCCCCCceEEEEEeeecccccc
Q 043460 271 ---RHHSNSHGSNKAASGARSWILKHSICMDEWGNK 303 (368)
Q Consensus 271 ---~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~ 303 (368)
.. .|.+.+++....+...
T Consensus 84 ~~~~~---------------~W~~d~~v~~~diw~~ 104 (131)
T PF07762_consen 84 EGSSW---------------EWKKDCEVDLSDIWAD 104 (131)
T ss_pred CCCCC---------------CEEEeEEEEhhhccCC
Confidence 33 8999999986655543
No 39
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.39 E-value=4.3 Score=36.49 Aligned_cols=132 Identities=15% Similarity=0.167 Sum_probs=81.4
Q ss_pred CCCCCCcEEEecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEE
Q 043460 91 PSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVD 170 (368)
Q Consensus 91 p~~~~~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~ 170 (368)
|......-+++.-+|-|-+..- ....+.-.||.++.-..+|.+..... ..=.+.-|+. +.-.+- ....-.+.
T Consensus 186 PqG~gpyGi~atpdGsvwyasl-agnaiaridp~~~~aev~p~P~~~~~-gsRriwsdpi--g~~wit----twg~g~l~ 257 (353)
T COG4257 186 PQGGGPYGICATPDGSVWYASL-AGNAIARIDPFAGHAEVVPQPNALKA-GSRRIWSDPI--GRAWIT----TWGTGSLH 257 (353)
T ss_pred CCCCCCcceEECCCCcEEEEec-cccceEEcccccCCcceecCCCcccc-cccccccCcc--CcEEEe----ccCCceee
Confidence 4333345677788888877653 45567789999998888887763111 1112233431 111111 11466789
Q ss_pred EEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCC
Q 043460 171 IFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNN 237 (368)
Q Consensus 171 vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~ 237 (368)
.|+..+.+|.+=.- |. .-....++++.+--.-|+.+ .+.|..||+++++|+ ++++|....
T Consensus 258 rfdPs~~sW~eypL--Pg----s~arpys~rVD~~grVW~sea~agai~rfdpeta~ft-v~p~pr~n~ 319 (353)
T COG4257 258 RFDPSVTSWIEYPL--PG----SKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFT-VLPIPRPNS 319 (353)
T ss_pred EeCcccccceeeeC--CC----CCCCcceeeeccCCcEEeeccccCceeecCcccceEE-EecCCCCCC
Confidence 99999999987652 11 11122345662333556655 789999999999999 999887643
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=93.15 E-value=0.33 Score=30.70 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=28.5
Q ss_pred ceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEEeCC
Q 043460 198 QSVYSRGGILYNLTY-------RSTILRYNIEALSEAEIIEVP 233 (368)
Q Consensus 198 ~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~~lP 233 (368)
.++.+ ++.||.+++ ...+..||+.+.+|+..-++|
T Consensus 6 ~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 6 AAVVV-GNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEE-TTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEE-CCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 36778 999999998 357999999999999444554
No 41
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.13 E-value=5.4 Score=35.69 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=53.9
Q ss_pred ceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCC--------CCCceeEEeeCCeEEEEEEC---CCeEEEE
Q 043460 198 QSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNH--------PCDSEVIGLCKGALNYASRN---QSTLLIW 265 (368)
Q Consensus 198 ~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~--------~~~~~~l~~~~G~L~~~~~~---~~~~~IW 265 (368)
.-|.. ||.+|.... ...|+.||+.+++......||..... ......+++-+..|-++... ..++.|-
T Consensus 73 G~vVY-ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvs 151 (250)
T PF02191_consen 73 GHVVY-NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVS 151 (250)
T ss_pred CeEEE-CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEE
Confidence 35777 999999997 68999999999988756778865432 12246677778888888772 3368888
Q ss_pred EEccC
Q 043460 266 QLDDH 270 (368)
Q Consensus 266 ~l~~~ 270 (368)
.|+..
T Consensus 152 kld~~ 156 (250)
T PF02191_consen 152 KLDPE 156 (250)
T ss_pred eeCcc
Confidence 88875
No 42
>PF13964 Kelch_6: Kelch motif
Probab=93.04 E-value=0.23 Score=32.12 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=26.9
Q ss_pred cceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEE
Q 043460 197 LQSVYSRGGILYNLTY-------RSTILRYNIEALSEAEII 230 (368)
Q Consensus 197 ~~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~ 230 (368)
..++.+ +|.||.+++ ...+..||+.+.+|+ .+
T Consensus 5 ~s~v~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~ 43 (50)
T PF13964_consen 5 HSAVVV-GGKIYVFGGYDNSGKYSNDVERYDPETNTWE-QL 43 (50)
T ss_pred CEEEEE-CCEEEEECCCCCCCCccccEEEEcCCCCcEE-EC
Confidence 346888 999999998 267999999999999 44
No 43
>smart00284 OLF Olfactomedin-like domains.
Probab=92.93 E-value=6.5 Score=35.15 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=54.0
Q ss_pred eeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCC-C-------CCCCceeEEeeCCeEEEEEE---CCCe
Q 043460 194 FYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKN-N-------HPCDSEVIGLCKGALNYASR---NQST 261 (368)
Q Consensus 194 ~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~-~-------~~~~~~~l~~~~G~L~~~~~---~~~~ 261 (368)
+....-|+. ||.+|.... ...|+.||+.+++......+|... . .....+-+++-+..|-++.. +..+
T Consensus 74 ~~GtG~VVY-ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ 152 (255)
T smart00284 74 GQGTGVVVY-NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK 152 (255)
T ss_pred cccccEEEE-CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC
Confidence 333345888 999999876 578999999999996355577532 1 11235677788888888766 3457
Q ss_pred EEEEEEccC
Q 043460 262 LLIWQLDDH 270 (368)
Q Consensus 262 ~~IW~l~~~ 270 (368)
|.|-.|+..
T Consensus 153 ivvSkLnp~ 161 (255)
T smart00284 153 IVISKLNPA 161 (255)
T ss_pred EEEEeeCcc
Confidence 888888875
No 44
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.93 E-value=6.2 Score=34.86 Aligned_cols=201 Identities=12% Similarity=0.080 Sum_probs=106.9
Q ss_pred EecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460 100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW 179 (368)
Q Consensus 100 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W 179 (368)
.+..+|-|+..+. ...+++.++|.+++...++.+. ..++.++.. +-+++... .....+++..++.+
T Consensus 7 ~d~~~g~l~~~D~-~~~~i~~~~~~~~~~~~~~~~~------~~G~~~~~~---~g~l~v~~----~~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 7 WDPRDGRLYWVDI-PGGRIYRVDPDTGEVEVIDLPG------PNGMAFDRP---DGRLYVAD----SGGIAVVDPDTGKV 72 (246)
T ss_dssp EETTTTEEEEEET-TTTEEEEEETTTTEEEEEESSS------EEEEEEECT---TSEEEEEE----TTCEEEEETTTTEE
T ss_pred EECCCCEEEEEEc-CCCEEEEEECCCCeEEEEecCC------CceEEEEcc---CCEEEEEE----cCceEEEecCCCcE
Confidence 3444666666654 5678999999999886544332 346676631 22333332 34556679999999
Q ss_pred eeccccCCCCCceeeeccceEEEeCCeEEEEEe-------C--CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCC
Q 043460 180 ITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-------R--STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKG 250 (368)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-------~--~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G 250 (368)
+..........+....+.-.+-- +|.+|.-.. . +.+..+|.. ++.. .+.-..... +......+|
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~~~p----NGi~~s~dg 145 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGLGFP----NGIAFSPDG 145 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEESSE----EEEEEETTS
T ss_pred EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEE-EEecCcccc----cceEECCcc
Confidence 87764321111122122223444 888777654 1 569999999 6655 332111111 223334466
Q ss_pred e-EEEEEECCCeEEEEEEccC--CCCCCCCCCccCCCCCCceEEEEEe-eeccccccCccccceEEEEEecCCCEEEEe-
Q 043460 251 A-LNYASRNQSTLLIWQLDDH--RHHSNSHGSNKAASGARSWILKHSI-CMDEWGNKLHVFGLTRFYNIHPNSDIIFLG- 325 (368)
Q Consensus 251 ~-L~~~~~~~~~~~IW~l~~~--~~~~~~~~~~~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 325 (368)
+ |++......+ ||..+-. +. .+.....+ ++.... ....=+++..+|+ ||+.
T Consensus 146 ~~lyv~ds~~~~--i~~~~~~~~~~---------------~~~~~~~~~~~~~~~------g~pDG~~vD~~G~-l~va~ 201 (246)
T PF08450_consen 146 KTLYVADSFNGR--IWRFDLDADGG---------------ELSNRRVFIDFPGGP------GYPDGLAVDSDGN-LWVAD 201 (246)
T ss_dssp SEEEEEETTTTE--EEEEEEETTTC---------------CEEEEEEEEE-SSSS------CEEEEEEEBTTS--EEEEE
T ss_pred hheeecccccce--eEEEecccccc---------------ceeeeeeEEEcCCCC------cCCCcceEcCCCC-EEEEE
Confidence 5 5555545555 5555543 32 46555444 222211 0112244555555 5555
Q ss_pred -eCCeEEEEECCCCeEEEecc
Q 043460 326 -SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 326 -~~~~~~~ydl~t~~~~~v~~ 345 (368)
...++.+||++.+..+.+..
T Consensus 202 ~~~~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 202 WGGGRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp ETTTEEEEEETTSCEEEEEE-
T ss_pred cCCCEEEEECCCccEEEEEcC
Confidence 67899999999666666665
No 45
>PF13964 Kelch_6: Kelch motif
Probab=92.45 E-value=0.22 Score=32.16 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=19.5
Q ss_pred CCeeEEEEcccCccceecCCCC
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAR 135 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~ 135 (368)
....+.++||.|++|..+|+++
T Consensus 26 ~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 26 YSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred ccccEEEEcCCCCcEEECCCCC
Confidence 3568999999999999999887
No 46
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=91.73 E-value=11 Score=34.95 Aligned_cols=170 Identities=14% Similarity=0.218 Sum_probs=94.8
Q ss_pred CCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecccc-CCCC-CceeeeccceEEEeCCe-EEEEEe-CCeE
Q 043460 141 SPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVS-VKPR-RPVSFYVLQSVYSRGGI-LYNLTY-RSTI 216 (368)
Q Consensus 141 ~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~-~~~~-~p~~~~~~~~v~~~~G~-lywl~~-~~~i 216 (368)
+.+.-.++| .++|-++.-- +.-.+.+|+..+|.-...... ++++ .|.+...+. ||+ .|.+++ .+.|
T Consensus 146 h~H~a~~tP--~~~~l~v~DL---G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-----n~k~aY~v~EL~stV 215 (346)
T COG2706 146 HVHSANFTP--DGRYLVVPDL---GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-----NGKYAYLVNELNSTV 215 (346)
T ss_pred ccceeeeCC--CCCEEEEeec---CCceEEEEEcccCccccccccccCCCCCcceEEEcC-----CCcEEEEEeccCCEE
Confidence 455556666 2345444322 467899999998876654421 1221 233332222 554 677776 5666
Q ss_pred EEEEcCC--CeEEEEE----eCCCCCCCCCCceeEE-eeCCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCc
Q 043460 217 LRYNIEA--LSEAEII----EVPDKNNHPCDSEVIG-LCKGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARS 288 (368)
Q Consensus 217 l~fD~~~--~~~~~~~----~lP~~~~~~~~~~~l~-~~~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~ 288 (368)
.++.... .++. .+ .+|.+..+......+- ..+|+ |++.......+.+..++..++ .
T Consensus 216 ~v~~y~~~~g~~~-~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g---------------~ 279 (346)
T COG2706 216 DVLEYNPAVGKFE-ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG---------------K 279 (346)
T ss_pred EEEEEcCCCceEE-EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC---------------E
Confidence 6555555 6776 33 3676654432222222 34675 555555555666677777644 4
Q ss_pred eEEEEEeeec-cccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEEEecc
Q 043460 289 WILKHSICMD-EWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 289 W~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~~v~~ 345 (368)
=+.+...+.+ .+++ -+.+...+++++.. +.-.+|.-|.+|++++++..
T Consensus 280 L~~~~~~~teg~~PR---------~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 280 LELVGITPTEGQFPR---------DFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEEEEeccCCcCCc---------cceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 4444444422 2232 23455566666665 33468888999999998876
No 47
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.10 E-value=3.8 Score=38.03 Aligned_cols=164 Identities=12% Similarity=0.121 Sum_probs=97.8
Q ss_pred cEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCC-eEEEEEe---------------------------------
Q 043460 167 PEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGG-ILYNLTY--------------------------------- 212 (368)
Q Consensus 167 ~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G-~lywl~~--------------------------------- 212 (368)
..+-.|++.+++|...++.. |..+....++.. ++ .+|+..+
T Consensus 113 nd~Y~y~p~~nsW~kl~t~s----P~gl~G~~~~~~-~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~ 187 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRS----PTGLVGASTFSL-NGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK 187 (381)
T ss_pred eeeEEecCCCChhheecccc----ccccccceeEec-CCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence 35778999999999998543 345444445666 55 8888776
Q ss_pred -------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC----CCeEEEEEEccC--CCCCCCCCC
Q 043460 213 -------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN----QSTLLIWQLDDH--RHHSNSHGS 279 (368)
Q Consensus 213 -------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~----~~~~~IW~l~~~--~~~~~~~~~ 279 (368)
...+++||+.+.+|+..-..|...... ...+.-+++|.++..+ -++-.+|+.+-. ..
T Consensus 188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG---sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~------- 257 (381)
T COG3055 188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG---SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNL------- 257 (381)
T ss_pred CHHHhcccccccccccccchhhhcCcCcccCccC---cceeecCCeEEEEcceecCCccccceeEEEeccCce-------
Confidence 256999999999999333477665432 2333345668888773 245566665543 33
Q ss_pred ccCCCCCCceEEEEEeeeccccccCccccceEEEE-Eec--CCCEEEEe-------------------------eCCeEE
Q 043460 280 NKAASGARSWILKHSICMDEWGNKLHVFGLTRFYN-IHP--NSDIIFLG-------------------------SCDMIY 331 (368)
Q Consensus 280 ~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~-~~~--~~~~v~~~-------------------------~~~~~~ 331 (368)
.|.+....+.+.-.+.. -+.+ +.. ++.+++.. -...|+
T Consensus 258 --------~w~~l~~lp~~~~~~~e------GvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy 323 (381)
T COG3055 258 --------KWLKLSDLPAPIGSNKE------GVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVY 323 (381)
T ss_pred --------eeeeccCCCCCCCCCcc------ccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEE
Confidence 89998766522111111 0111 111 22222221 145688
Q ss_pred EEECCCCeEEEecc-CCCcceeeeeeeeecc
Q 043460 332 RYHLKTNKMELFST-RSPLHLYRLALLSSCR 361 (368)
Q Consensus 332 ~ydl~t~~~~~v~~-~~~~~~~~~~py~p~~ 361 (368)
.+| .+.|+.++. ....++...+.|=..+
T Consensus 324 ~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~v 352 (381)
T COG3055 324 IFD--NGSWKIVGELPQGLAYGVSLSYNNKV 352 (381)
T ss_pred EEc--CCceeeecccCCCccceEEEecCCcE
Confidence 888 889999988 5554555566654433
No 48
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.74 E-value=10 Score=32.88 Aligned_cols=138 Identities=13% Similarity=0.153 Sum_probs=80.1
Q ss_pred EEEEEeCCCCC--ceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeE
Q 043460 168 EVDIFSSENKT--WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVI 245 (368)
Q Consensus 168 ~~~vyss~~~~--W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l 245 (368)
.+..++..+|+ |+..-.. . ........+.. +|.+|.......+.++|..+++......++..... ..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~---~--~~~~~~~~~~~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-----~~ 72 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGP---G--IGGPVATAVPD-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-----AP 72 (238)
T ss_dssp EEEEEETTTTEEEEEEECSS---S--CSSEEETEEEE-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-----GE
T ss_pred EEEEEECCCCCEEEEEECCC---C--CCCccceEEEe-CCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc-----ee
Confidence 46778887775 8774311 0 11111224556 99999987799999999988766535556543322 13
Q ss_pred EeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEE-EEEeeeccccccCccccceEEEEEecCCCEEEE
Q 043460 246 GLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWIL-KHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFL 324 (368)
Q Consensus 246 ~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 324 (368)
...++.+++...+. .|+.++..++ ...|.. ...-+...+.. ... ..+. ++.+++
T Consensus 73 ~~~~~~v~v~~~~~---~l~~~d~~tG-------------~~~W~~~~~~~~~~~~~~------~~~-~~~~--~~~~~~ 127 (238)
T PF13360_consen 73 VVDGGRVYVGTSDG---SLYALDAKTG-------------KVLWSIYLTSSPPAGVRS------SSS-PAVD--GDRLYV 127 (238)
T ss_dssp EEETTEEEEEETTS---EEEEEETTTS-------------CEEEEEEE-SSCTCSTB--------SE-EEEE--TTEEEE
T ss_pred eeccccccccccee---eeEecccCCc-------------ceeeeecccccccccccc------ccC-ceEe--cCEEEE
Confidence 56788887776433 6777763211 127884 33322111110 011 1222 566666
Q ss_pred e-eCCeEEEEECCCCeEE
Q 043460 325 G-SCDMIYRYHLKTNKME 341 (368)
Q Consensus 325 ~-~~~~~~~ydl~t~~~~ 341 (368)
. ....++.+|++|++..
T Consensus 128 ~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 128 GTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EETCSEEEEEETTTTEEE
T ss_pred EeccCcEEEEecCCCcEE
Confidence 6 4889999999999863
No 49
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.63 E-value=20 Score=34.43 Aligned_cols=116 Identities=21% Similarity=0.228 Sum_probs=66.4
Q ss_pred EEeCCeEEEEEe----CCeEEEEEcCCCe---EEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCC
Q 043460 201 YSRGGILYNLTY----RSTILRYNIEALS---EAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHH 273 (368)
Q Consensus 201 ~~~~G~lywl~~----~~~il~fD~~~~~---~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~ 273 (368)
.. ++.+|.++. ...|+++|+.+.. |. .+-+|...... -..+...++.|++....+..-+|.+++-. .
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~-~~l~~~~~~~~--l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~- 358 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWW-TVLIPEDEDVS--LEDVSLFKDYLVLSYRENGSSRLRVYDLD-D- 358 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEE-EEEE--SSSEE--EEEEEEETTEEEEEEEETTEEEEEEEETT---
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccce-eEEcCCCCcee--EEEEEEECCEEEEEEEECCccEEEEEECC-C-
Confidence 44 888998887 5789999999876 55 33333322111 22444568899888886555445444443 1
Q ss_pred CCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-----eCCeEEEEECCCCeEEEec
Q 043460 274 SNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-----SCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~ydl~t~~~~~v~ 344 (368)
.|.... +++.... .+..+....+++.+++. ....++.||+.|++.+.+.
T Consensus 359 --------------~~~~~~-~~~p~~g-------~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 359 --------------GKESRE-IPLPEAG-------SVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp --------------TEEEEE-EESSSSS-------EEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred --------------CcEEee-ecCCcce-------EEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 244332 3322222 11222233466667775 5678999999999998764
No 50
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.18 E-value=15 Score=33.09 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=72.9
Q ss_pred ceEEE-eCCeEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCC
Q 043460 198 QSVYS-RGGILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHH 273 (368)
Q Consensus 198 ~~v~~-~~G~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~ 273 (368)
+++.. ++|.+|=-++ +..|..+|+.+++.....++|...- .--++..+++|+.+...+...-++-.+.
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F----gEGit~~~d~l~qLTWk~~~~f~yd~~t---- 119 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF----GEGITILGDKLYQLTWKEGTGFVYDPNT---- 119 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------EEEEEEETTEEEEEESSSSEEEEEETTT----
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc----ceeEEEECCEEEEEEecCCeEEEEcccc----
Confidence 44433 4889988887 5789999999998865889997643 3467788999999998777776665543
Q ss_pred CCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEE
Q 043460 274 SNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKME 341 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~ 341 (368)
..++.++..+. .++ |++.+++.+++. ++.+++..|+++-+..
T Consensus 120 ---------------l~~~~~~~y~~--------EGW---GLt~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 120 ---------------LKKIGTFPYPG--------EGW---GLTSDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp ---------------TEEEEEEE-SS--------S-----EEEECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred ---------------ceEEEEEecCC--------cce---EEEcCCCEEEEECCccceEEECCcccceE
Confidence 45555665431 223 444556666666 6678999999887654
No 51
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=88.49 E-value=21 Score=33.17 Aligned_cols=199 Identities=12% Similarity=0.133 Sum_probs=106.7
Q ss_pred EEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCC-CC-ceecccc-CCCCCce---
Q 043460 119 YVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSEN-KT-WITRKVS-VKPRRPV--- 192 (368)
Q Consensus 119 ~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~-~~-W~~~~~~-~~~~~p~--- 192 (368)
|=+||..|+...|=....... ....+..|+ .++|-+.+-+. .-.+.||-.++ |+ |..+... .+...|.
T Consensus 69 y~iD~~~G~Lt~ln~~~~~g~-~p~yvsvd~--~g~~vf~AnY~---~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ 142 (346)
T COG2706 69 YRIDPDDGRLTFLNRQTLPGS-PPCYVSVDE--DGRFVFVANYH---SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ 142 (346)
T ss_pred EEEcCCCCeEEEeeccccCCC-CCeEEEECC--CCCEEEEEEcc---CceEEEEEcccCCccccceeeeecCCCCCCccc
Confidence 335565555444432221111 114566676 35666665553 46788888855 44 4332211 1111011
Q ss_pred -eeeccc-eEEEeCCeEEEEEe--CCeEEEEEcCCCeEEE--EEeCCCCCCCCCCceeEEee-CCeEEEEEE-CCCeEEE
Q 043460 193 -SFYVLQ-SVYSRGGILYNLTY--RSTILRYNIEALSEAE--IIEVPDKNNHPCDSEVIGLC-KGALNYASR-NQSTLLI 264 (368)
Q Consensus 193 -~~~~~~-~v~~~~G~lywl~~--~~~il~fD~~~~~~~~--~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~-~~~~~~I 264 (368)
....+. ..-= +|..-|.+. ...|..||++.++..+ ...+++... ...++.. +|+++++.. -..++.+
T Consensus 143 ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G----PRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 143 ESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG----PRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred cCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCC----cceEEEcCCCcEEEEEeccCCEEEE
Confidence 000000 1112 344444444 5677777777665541 112322211 2344444 788776665 5789999
Q ss_pred EEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeE
Q 043460 265 WQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKM 340 (368)
Q Consensus 265 W~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~ 340 (368)
|..+...+ +-+.+.++. .++.+..+.....-+.+.++|.++|.. +.-.+|..|..++++
T Consensus 218 ~~y~~~~g---------------~~~~lQ~i~--tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L 280 (346)
T COG2706 218 LEYNPAVG---------------KFEELQTID--TLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL 280 (346)
T ss_pred EEEcCCCc---------------eEEEeeeec--cCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE
Confidence 99998644 566666555 233222222445556778899999998 344688889999998
Q ss_pred EEecc
Q 043460 341 ELFST 345 (368)
Q Consensus 341 ~~v~~ 345 (368)
+.+..
T Consensus 281 ~~~~~ 285 (346)
T COG2706 281 ELVGI 285 (346)
T ss_pred EEEEE
Confidence 87765
No 52
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.33 E-value=22 Score=33.22 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=62.9
Q ss_pred CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe----------CCeEEEEEcCCCeEEEEEeCCCC
Q 043460 166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----------RSTILRYNIEALSEAEIIEVPDK 235 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----------~~~il~fD~~~~~~~~~~~lP~~ 235 (368)
...+-+|++.++.|+..... |+.-..+.++.. .|..-++.. .....-|.-...+|...-++|..
T Consensus 195 n~ev~sy~p~~n~W~~~G~~-----pf~~~aGsa~~~-~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLGEN-----PFYGNAGSAVVI-KGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred cccccccccccchhhhcCcC-----cccCccCcceee-cCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence 45678899999999988732 233334445555 555444433 23445555567788844466665
Q ss_pred CCCCCCce----eEEeeCCeEEEEEE----------------------CCCeEEEEEEccCCCCCCCCCCccCCCCCCce
Q 043460 236 NNHPCDSE----VIGLCKGALNYASR----------------------NQSTLLIWQLDDHRHHSNSHGSNKAASGARSW 289 (368)
Q Consensus 236 ~~~~~~~~----~l~~~~G~L~~~~~----------------------~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W 289 (368)
..... .. .-+.++|.+.+... ...+-+||.+++ + +|
T Consensus 269 ~~~~~-eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~--g---------------~W 330 (381)
T COG3055 269 IGSNK-EGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN--G---------------SW 330 (381)
T ss_pred CCCCc-cccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC--C---------------ce
Confidence 43221 12 22344555555543 012357888884 5 89
Q ss_pred EEEEEeee
Q 043460 290 ILKHSICM 297 (368)
Q Consensus 290 ~~~~~i~~ 297 (368)
..+..++.
T Consensus 331 k~~GeLp~ 338 (381)
T COG3055 331 KIVGELPQ 338 (381)
T ss_pred eeecccCC
Confidence 99999884
No 53
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.27 E-value=22 Score=33.27 Aligned_cols=220 Identities=15% Similarity=0.209 Sum_probs=113.9
Q ss_pred cEEEecCCcEEEEeecC--CCee--EEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEE
Q 043460 97 YALIDCCNGLILLGSSL--SKHR--YYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIF 172 (368)
Q Consensus 97 ~~~~~s~~Glll~~~~~--~~~~--~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vy 172 (368)
+..++..+.+|.+.... .... .+-+++.+++...+-..+. .....+.+.+++. +.|-++.-+ ..-.+.+|
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~--g~~l~vany---~~g~v~v~ 114 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPD--GRFLYVANY---GGGSVSVF 114 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTT--SSEEEEEET---TTTEEEEE
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecC--CCEEEEEEc---cCCeEEEE
Confidence 33344445555444431 1223 3345565566555433221 1123346777772 455554433 35678888
Q ss_pred eCCCC-CceeccccC-------CCCCceeeeccceEEEeCCeEEEEEe--CCeEEEEEcCCCe--EEE--EEeCCCCCCC
Q 043460 173 SSENK-TWITRKVSV-------KPRRPVSFYVLQSVYSRGGILYNLTY--RSTILRYNIEALS--EAE--IIEVPDKNNH 238 (368)
Q Consensus 173 ss~~~-~W~~~~~~~-------~~~~p~~~~~~~~v~~~~G~lywl~~--~~~il~fD~~~~~--~~~--~~~lP~~~~~ 238 (368)
...+. +=....... .+........+..+.--+|...|... ...|..|+...+. ... .+.+|....
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G- 193 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG- 193 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS-
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC-
Confidence 88763 222211000 00000111112222221566555554 6788999988766 531 455665432
Q ss_pred CCCceeEEee-CCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee-ecc-ccccCccccceEEEE
Q 043460 239 PCDSEVIGLC-KGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC-MDE-WGNKLHVFGLTRFYN 314 (368)
Q Consensus 239 ~~~~~~l~~~-~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~-~~~-~~~~~~~~~~~~~~~ 314 (368)
...++.. +|+ +|++.....++.++.++..+. .++.+..+. ++. +... ....=+.
T Consensus 194 ---PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g---------------~~~~~~~~~~~~~~~~~~----~~~~~i~ 251 (345)
T PF10282_consen 194 ---PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG---------------SLTEIQTISTLPEGFTGE----NAPAEIA 251 (345)
T ss_dssp ---EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT---------------EEEEEEEEESCETTSCSS----SSEEEEE
T ss_pred ---CcEEEEcCCcCEEEEecCCCCcEEEEeecccCC---------------ceeEEEEeeecccccccc----CCceeEE
Confidence 2344444 554 555555677899998885444 788887777 322 1111 1344567
Q ss_pred EecCCCEEEEe--eCCeEEEEEC--CCCeEEEecc
Q 043460 315 IHPNSDIIFLG--SCDMIYRYHL--KTNKMELFST 345 (368)
Q Consensus 315 ~~~~~~~v~~~--~~~~~~~ydl--~t~~~~~v~~ 345 (368)
+.+++..+|+. ....|..|++ ++++++.+..
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 88999999998 5567888887 5567776654
No 54
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=88.06 E-value=22 Score=33.42 Aligned_cols=127 Identities=10% Similarity=0.111 Sum_probs=69.1
Q ss_pred CCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC---C-------eEEEEEEccCCCC
Q 043460 204 GGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ---S-------TLLIWQLDDHRHH 273 (368)
Q Consensus 204 ~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~---~-------~~~IW~l~~~~~~ 273 (368)
+.+|..+.....++.||.++.... .+|....... .......+|+||+..... . .++.-.......
T Consensus 76 gskIv~~d~~~~t~vyDt~t~av~---~~P~l~~pk~-~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~- 150 (342)
T PF07893_consen 76 GSKIVAVDQSGRTLVYDTDTRAVA---TGPRLHSPKR-CPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPD- 150 (342)
T ss_pred CCeEEEEcCCCCeEEEECCCCeEe---ccCCCCCCCc-ceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccc-
Confidence 556666655677999999988877 4444322221 223344478899887621 1 333332221000
Q ss_pred CCCCCCccCCCCCCceEEEEEeeeccccccCccc-cceEEEEEecCCCEEEEe-eCC--eEEEEECCCCeEEEecc
Q 043460 274 SNSHGSNKAASGARSWILKHSICMDEWGNKLHVF-GLTRFYNIHPNSDIIFLG-SCD--MIYRYHLKTNKMELFST 345 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~-~~~--~~~~ydl~t~~~~~v~~ 345 (368)
.....+..+|.. ++.+.+....... ..+.-.+++ +|.-|++. ... ..|+||.++.+|+++++
T Consensus 151 ------~~~~~~~w~W~~---LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 151 ------DPSPEESWSWRS---LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred ------cccCCCcceEEc---CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence 001122335555 4423333322100 013334556 78889996 333 69999999999999976
No 55
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=86.51 E-value=1.8 Score=27.70 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=25.5
Q ss_pred ceEEEeCCeEEEEEe---------CCeEEEEEcCCCeEEEEE
Q 043460 198 QSVYSRGGILYNLTY---------RSTILRYNIEALSEAEII 230 (368)
Q Consensus 198 ~~v~~~~G~lywl~~---------~~~il~fD~~~~~~~~~~ 230 (368)
.++.+ +++||..++ ...+..||+++.+|+ .+
T Consensus 6 s~~~~-~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~-~~ 45 (49)
T PF07646_consen 6 SAVVL-DGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWT-EL 45 (49)
T ss_pred EEEEE-CCEEEEECCcccCCCCcccceeEEEECCCCEEe-ec
Confidence 46778 999999886 357899999999999 44
No 56
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.41 E-value=29 Score=32.54 Aligned_cols=173 Identities=15% Similarity=0.287 Sum_probs=97.8
Q ss_pred CCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC--ceeccc-cCCC-CCceeeeccceEEEeCC-eEEEEEe-
Q 043460 139 LASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT--WITRKV-SVKP-RRPVSFYVLQSVYSRGG-ILYNLTY- 212 (368)
Q Consensus 139 ~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~--W~~~~~-~~~~-~~p~~~~~~~~v~~~~G-~lywl~~- 212 (368)
..+.+...++|. ++|-.+.-. +.-.+.+|+...+. ...... ..+. ..|.+..... +| .+|.+.+
T Consensus 143 ~~h~H~v~~~pd--g~~v~v~dl---G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-----dg~~~Yv~~e~ 212 (345)
T PF10282_consen 143 GPHPHQVVFSPD--GRFVYVPDL---GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-----DGKYAYVVNEL 212 (345)
T ss_dssp STCEEEEEE-TT--SSEEEEEET---TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-----TSSEEEEEETT
T ss_pred cccceeEEECCC--CCEEEEEec---CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-----CcCEEEEecCC
Confidence 345667788882 455444322 46688888887765 544221 1111 1233332221 44 5777776
Q ss_pred CCeEEEEEcC--CCeEEEEE----eCCCCCCCCCCceeEEee-CCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCC
Q 043460 213 RSTILRYNIE--ALSEAEII----EVPDKNNHPCDSEVIGLC-KGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAAS 284 (368)
Q Consensus 213 ~~~il~fD~~--~~~~~~~~----~lP~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~ 284 (368)
...|.+|+.. +.++. .+ .+|...........+..+ +|+ |++.......+.++.++..++
T Consensus 213 s~~v~v~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g------------ 279 (345)
T PF10282_consen 213 SNTVSVFDYDPSDGSLT-EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG------------ 279 (345)
T ss_dssp TTEEEEEEEETTTTEEE-EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT------------
T ss_pred CCcEEEEeecccCCcee-EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC------------
Confidence 6778888888 66665 32 244332221112344444 665 666666888999999977544
Q ss_pred CCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEE--ECCCCeEEEecc
Q 043460 285 GARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRY--HLKTNKMELFST 345 (368)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~y--dl~t~~~~~v~~ 345 (368)
.-+++..++... ...+-+.+.++++.+++. ....+..| |.+|++++.+..
T Consensus 280 ---~l~~~~~~~~~G--------~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 280 ---TLTLVQTVPTGG--------KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp ---TEEEEEEEEESS--------SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred ---ceEEEEEEeCCC--------CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 566666665321 113446778899999887 44455555 668889988764
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=85.88 E-value=0.58 Score=44.31 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCC
Q 043460 5 YLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKV 40 (368)
Q Consensus 5 ~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~ 40 (368)
.||.|++..||+-|..+++.|++.+|+.|+.+..|.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 799999999999999999999999999999987764
No 58
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=85.86 E-value=24 Score=31.08 Aligned_cols=109 Identities=14% Similarity=0.189 Sum_probs=65.8
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEEEEccCCCCCCCCCCcc
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNK 281 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~ 281 (368)
+|.|||... ...|..+|+.+.+.+ .+.+|.. ...... .+|+|++.... .+.+. +..++
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~~------~G~~~~~~~g~l~v~~~~--~~~~~--d~~~g--------- 70 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPGP------NGMAFDRPDGRLYVADSG--GIAVV--DPDTG--------- 70 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEESSSE------EEEEEECTTSEEEEEETT--CEEEE--ETTTT---------
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE-EEecCCC------ceEEEEccCCEEEEEEcC--ceEEE--ecCCC---------
Confidence 699999986 789999999999999 8888862 112233 46777766543 22222 33334
Q ss_pred CCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee--------C--CeEEEEECCCCeEEEecc
Q 043460 282 AASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS--------C--DMIYRYHLKTNKMELFST 345 (368)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~--~~~~~ydl~t~~~~~v~~ 345 (368)
+++........... . ....=+++.++|+ +|+.+ . ..+++++.+ ++++.+..
T Consensus 71 ------~~~~~~~~~~~~~~-~----~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 71 ------KVTVLADLPDGGVP-F----NRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp ------EEEEEEEEETTCSC-T----EEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred ------cEEEEeeccCCCcc-c----CCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 67777766311100 0 1223356677766 55541 1 468999999 77666554
No 59
>PRK04792 tolB translocation protein TolB; Provisional
Probab=85.28 E-value=39 Score=33.03 Aligned_cols=185 Identities=13% Similarity=0.104 Sum_probs=98.1
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
...+++++|..|++...+...+. ......+.|. +. +++......+...+.+++.+++..+.......
T Consensus 240 g~~~L~~~dl~tg~~~~lt~~~g----~~~~~~wSPD--G~-~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~------ 306 (448)
T PRK04792 240 RKAEIFVQDIYTQVREKVTSFPG----INGAPRFSPD--GK-KLALVLSKDGQPEIYVVDIATKALTRITRHRA------ 306 (448)
T ss_pred CCcEEEEEECCCCCeEEecCCCC----CcCCeeECCC--CC-EEEEEEeCCCCeEEEEEECCCCCeEECccCCC------
Confidence 34579999999998777654331 1123455552 23 23333332245567777888887766542110
Q ss_pred eeccce-EEEeCC-eEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCC-eEEEEEECCCeEEEEEE
Q 043460 194 FYVLQS-VYSRGG-ILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKG-ALNYASRNQSTLLIWQL 267 (368)
Q Consensus 194 ~~~~~~-v~~~~G-~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G-~L~~~~~~~~~~~IW~l 267 (368)
....+ ..- +| .+++... ...|..+|+.+.+.. .+........ ... ...+| .|++........+||.+
T Consensus 307 -~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~---~~~-~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 307 -IDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNL---GGS-ITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred -CccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCc---Cee-ECCCCCEEEEEEecCCceEEEEE
Confidence 01111 112 44 3544443 357888999888877 4432111110 112 23355 45555555566889998
Q ss_pred ccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEEEe
Q 043460 268 DDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKMELF 343 (368)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~~v 343 (368)
+-.++ ....+.. .... ..+ .+.++|..|++. ....++.+|.+.+..+++
T Consensus 380 dl~~g---------------~~~~lt~---~~~d--------~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 380 DLETG---------------AMQVLTS---TRLD--------ESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred ECCCC---------------CeEEccC---CCCC--------CCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 86543 3333211 1111 112 466777776665 223588889877766666
Q ss_pred cc
Q 043460 344 ST 345 (368)
Q Consensus 344 ~~ 345 (368)
..
T Consensus 433 ~~ 434 (448)
T PRK04792 433 PA 434 (448)
T ss_pred cC
Confidence 54
No 60
>PRK00178 tolB translocation protein TolB; Provisional
Probab=84.17 E-value=42 Score=32.43 Aligned_cols=184 Identities=14% Similarity=0.144 Sum_probs=97.5
Q ss_pred CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceee
Q 043460 115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSF 194 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~ 194 (368)
...++++|..|++.+.+...+. ......+.| .++ +++......+...+.+++.+++..+...... .
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g----~~~~~~~Sp--DG~-~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~--~----- 287 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEG----LNGAPAWSP--DGS-KLAFVLSKDGNPEIYVMDLASRQLSRVTNHP--A----- 287 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCC----CcCCeEECC--CCC-EEEEEEccCCCceEEEEECCCCCeEEcccCC--C-----
Confidence 3579999999998887764431 112344555 123 3332222224457778899888876554211 0
Q ss_pred eccce-EEEeCC-eEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCC-eEEEEEECCCeEEEEEEc
Q 043460 195 YVLQS-VYSRGG-ILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKG-ALNYASRNQSTLLIWQLD 268 (368)
Q Consensus 195 ~~~~~-v~~~~G-~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G-~L~~~~~~~~~~~IW~l~ 268 (368)
....+ ..- +| .+++... ...|..+|+.+++.+ .+...... .. .... ..+| .|++.........||.++
T Consensus 288 ~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~-~~--~~~~-Spdg~~i~~~~~~~~~~~l~~~d 361 (430)
T PRK00178 288 IDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNY-NA--RPRL-SADGKTLVMVHRQDGNFHVAAQD 361 (430)
T ss_pred CcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCC-cc--ceEE-CCCCCEEEEEEccCCceEEEEEE
Confidence 01111 122 44 4565554 346888899888776 44322111 10 1122 2344 455555444556788777
Q ss_pred cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEEEec
Q 043460 269 DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~~v~ 344 (368)
-.++ ....+..- ... ..+ .+.++|..|++. ....++..+++.+..+.+.
T Consensus 362 l~tg---------------~~~~lt~~---~~~--------~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 362 LQRG---------------SVRILTDT---SLD--------ESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred CCCC---------------CEEEccCC---CCC--------CCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 6433 44332211 111 112 456777777765 2346889999877766665
Q ss_pred c
Q 043460 345 T 345 (368)
Q Consensus 345 ~ 345 (368)
.
T Consensus 415 ~ 415 (430)
T PRK00178 415 T 415 (430)
T ss_pred C
Confidence 4
No 61
>smart00612 Kelch Kelch domain.
Probab=83.99 E-value=2.3 Score=26.34 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=16.7
Q ss_pred CcEEEEEeCCCCCceecccc
Q 043460 166 DPEVDIFSSENKTWITRKVS 185 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~ 185 (368)
...+++|++++++|+..+.+
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~ 33 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSM 33 (47)
T ss_pred eeeEEEECCCCCeEccCCCC
Confidence 45789999999999988754
No 62
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=83.78 E-value=36 Score=31.34 Aligned_cols=234 Identities=15% Similarity=0.141 Sum_probs=113.1
Q ss_pred EEecCCcEEEEeecCCCeeEEEEcccCccce---ecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCC
Q 043460 99 LIDCCNGLILLGSSLSKHRYYVCNPLTKQCV---AIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSE 175 (368)
Q Consensus 99 ~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~---~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~ 175 (368)
+.=|++|..|+..+ +.-.+..|+-..|... +++.| .-+-.+.|. ..+--|+.... ....+..|+-.
T Consensus 71 l~WS~dgr~LltsS-~D~si~lwDl~~gs~l~rirf~sp-------v~~~q~hp~-k~n~~va~~~~--~sp~vi~~s~~ 139 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSS-RDWSIKLWDLLKGSPLKRIRFDSP-------VWGAQWHPR-KRNKCVATIME--ESPVVIDFSDP 139 (405)
T ss_pred EEecCCCCEeeeec-CCceeEEEeccCCCceeEEEccCc-------cceeeeccc-cCCeEEEEEec--CCcEEEEecCC
Confidence 34467777777764 5666777776665521 12222 223346663 22222333332 23445555542
Q ss_pred CCCceeccccCCCCCceeeeccceEEEeCCeEEEEE-eCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEE
Q 043460 176 NKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLT-YRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNY 254 (368)
Q Consensus 176 ~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~-~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~ 254 (368)
.. +..+...+. ........+++-|.|..-..+ ..+.+++||.++-+.....+.-.. ...+......+|+..+
T Consensus 140 ~h--~~Lp~d~d~--dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~---~~IK~I~~s~~g~~li 212 (405)
T KOG1273|consen 140 KH--SVLPKDDDG--DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSV---QAIKQIIVSRKGRFLI 212 (405)
T ss_pred ce--eeccCCCcc--ccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechh---eeeeEEEEeccCcEEE
Confidence 11 122211110 011122224555455433222 278999999998755423332211 1112244455788888
Q ss_pred EEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEE
Q 043460 255 ASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYR 332 (368)
Q Consensus 255 ~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ 332 (368)
+...+..++.+.+++... .|+++ +=+..+.++ .+.+.. .+.-.++...|+.|+.. ..+.+|.
T Consensus 213 iNtsDRvIR~ye~~di~~----~~r~~------e~e~~~K~q--DvVNk~----~Wk~ccfs~dgeYv~a~s~~aHaLYI 276 (405)
T KOG1273|consen 213 INTSDRVIRTYEISDIDD----EGRDG------EVEPEHKLQ--DVVNKL----QWKKCCFSGDGEYVCAGSARAHALYI 276 (405)
T ss_pred EecCCceEEEEehhhhcc----cCccC------CcChhHHHH--HHHhhh----hhhheeecCCccEEEeccccceeEEE
Confidence 888888899888876521 01111 222222222 111111 12334555566666555 4456777
Q ss_pred EECCCCeEEEecc---CCCcceeeeeeeeeccccCCC
Q 043460 333 YHLKTNKMELFST---RSPLHLYRLALLSSCRANIKS 366 (368)
Q Consensus 333 ydl~t~~~~~v~~---~~~~~~~~~~py~p~~~~~~~ 366 (368)
..-.++.+-++-. |...---.-.|+.|++.++.|
T Consensus 277 WE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~s 313 (405)
T KOG1273|consen 277 WEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIAS 313 (405)
T ss_pred EecCCcceeeeecCCchhheeecccccceeeeeeccC
Confidence 7777777655543 222111224566666666655
No 63
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=82.11 E-value=2 Score=27.35 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=14.2
Q ss_pred CeeEEEEcccCccceecCCCC
Q 043460 115 KHRYYVCNPLTKQCVAIPKAR 135 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~lP~~~ 135 (368)
...++++|+.|++|.++|++|
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp ---EEEEETTTTEEEE--SS-
T ss_pred cCCEEEEECCCCEEEECCCCC
Confidence 346899999999999998776
No 64
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=81.92 E-value=49 Score=31.58 Aligned_cols=109 Identities=11% Similarity=-0.005 Sum_probs=58.8
Q ss_pred CcEEEEeecCCCeeEEEEcccCcccee---cCCCCcCCCCC-CCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC--
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVA---IPKAREDVLAS-PPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK-- 177 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~---lP~~~~~~~~~-~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~-- 177 (368)
+|.|.+.. ....++-+|+.||+.++ ++......... ...+.-.|... +=+|+... ..-.+..++.++|
T Consensus 69 ~~~vy~~~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~---~~g~l~ald~~tG~~ 142 (394)
T PRK11138 69 YNKVYAAD--RAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGS---EKGQVYALNAEDGEV 142 (394)
T ss_pred CCEEEEEC--CCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEc---CCCEEEEEECCCCCC
Confidence 56666654 34577788888888554 22211000000 00000011111 12333322 2345667777776
Q ss_pred CceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEE
Q 043460 178 TWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEA 227 (368)
Q Consensus 178 ~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~ 227 (368)
.|+..... .....++.. +|.+|.....+.+.+||..+++..
T Consensus 143 ~W~~~~~~--------~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~ 183 (394)
T PRK11138 143 AWQTKVAG--------EALSRPVVS-DGLVLVHTSNGMLQALNESDGAVK 183 (394)
T ss_pred cccccCCC--------ceecCCEEE-CCEEEEECCCCEEEEEEccCCCEe
Confidence 48765411 123456788 999998877889999999887544
No 65
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.84 E-value=33 Score=33.97 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=65.9
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
..+|-+|+.+. ...++.||||. +.+.+-.+...+....+..-|-|. +++=.|+... +...+.+|+..+.+=+.
T Consensus 59 n~dG~lL~SGS-DD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~-tnnriv~sgA---gDk~i~lfdl~~~~~~~ 131 (758)
T KOG1310|consen 59 NADGELLASGS-DDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPY-TNNRIVLSGA---GDKLIKLFDLDSSKEGG 131 (758)
T ss_pred cCCCCEEeecC-CcceEEeecch--hcceeeeeecccccceeEEeeecc-CCCeEEEecc---CcceEEEEecccccccc
Confidence 46788888875 77889999999 455554444444444455556674 3333333222 36788899887644322
Q ss_pred ccccCCCCCcee-eec-----cc-eEEEeCC-eEEEEEe-CCeEEEEEcCCCe
Q 043460 182 RKVSVKPRRPVS-FYV-----LQ-SVYSRGG-ILYNLTY-RSTILRYNIEALS 225 (368)
Q Consensus 182 ~~~~~~~~~p~~-~~~-----~~-~v~~~~G-~lywl~~-~~~il~fD~~~~~ 225 (368)
.+..... +.. +.. .+ ++.= +| .++|.+. ++.|.-+|+..-+
T Consensus 132 ~d~~~~~--~~~~~~cht~rVKria~~p-~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 132 MDHGMEE--TTRCWSCHTDRVKRIATAP-NGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred cccCccc--hhhhhhhhhhhhhheecCC-CCCceEEEecCCcceeeecccCCc
Confidence 2211110 111 111 12 3333 55 7999887 7889999998643
No 66
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=80.62 E-value=52 Score=31.05 Aligned_cols=99 Identities=9% Similarity=0.066 Sum_probs=57.1
Q ss_pred CcEEEEeecCCCeeEEEEcccCcccee---cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC--
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVA---IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT-- 178 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~---lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~-- 178 (368)
+|.+.+.. ....++.+|+.||+..+ ++.... .+...+ ++ +|+... ..-.+..++.++|.
T Consensus 65 ~~~v~v~~--~~g~v~a~d~~tG~~~W~~~~~~~~~------~~p~v~----~~-~v~v~~---~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 65 GGKVYAAD--ADGTVVALDAETGKRLWRVDLDERLS------GGVGAD----GG-LVFVGT---EKGEVIALDAEDGKEL 128 (377)
T ss_pred CCEEEEEC--CCCeEEEEEccCCcEeeeecCCCCcc------cceEEc----CC-EEEEEc---CCCEEEEEECCCCcEe
Confidence 56666654 44578888999988654 332110 011111 11 222211 13456677777764
Q ss_pred ceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEE
Q 043460 179 WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEA 227 (368)
Q Consensus 179 W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~ 227 (368)
|+.... ......++.. +|.+|....++.+.++|..+++..
T Consensus 129 W~~~~~--------~~~~~~p~v~-~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 129 WRAKLS--------SEVLSPPLVA-NGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred eeeccC--------ceeecCCEEE-CCEEEEECCCCeEEEEEcCCCcee
Confidence 875431 1122345667 899998777889999999876543
No 67
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=80.56 E-value=45 Score=34.35 Aligned_cols=105 Identities=12% Similarity=0.227 Sum_probs=60.9
Q ss_pred eEEee-CCeEEEEEECCCeEEEEEEccC------CCCCCCC-C-----------CccCCCCCCceEEEEEeeeccccccC
Q 043460 244 VIGLC-KGALNYASRNQSTLLIWQLDDH------RHHSNSH-G-----------SNKAASGARSWILKHSICMDEWGNKL 304 (368)
Q Consensus 244 ~l~~~-~G~L~~~~~~~~~~~IW~l~~~------~~~~~~~-~-----------~~~~~~~~~~W~~~~~i~~~~~~~~~ 304 (368)
.+..+ ||.+...+.++..+.||-.... ++|.+.. | |---.|.+..|.+..=..++.+....
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~ 434 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE 434 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC
Confidence 34443 7888888888888999966642 3432211 0 00022233344444333333222221
Q ss_pred ccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEEeccCCCcc
Q 043460 305 HVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMELFSTRSPLH 350 (368)
Q Consensus 305 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~v~~~~~~~ 350 (368)
+ ..+.-+++.+.|++|+.. +...+++.+++|+++-.+-.|.+.+
T Consensus 435 p--~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP 480 (893)
T KOG0291|consen 435 P--IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP 480 (893)
T ss_pred c--eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc
Confidence 1 234446677779999887 6678999999999987776655533
No 68
>PRK05137 tolB translocation protein TolB; Provisional
Probab=79.73 E-value=62 Score=31.39 Aligned_cols=186 Identities=13% Similarity=0.067 Sum_probs=94.4
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....++++|+.|++.+.+...+. ......+.|. +. +++......+...+.+++.+++.-+...... .
T Consensus 224 g~~~i~~~dl~~g~~~~l~~~~g----~~~~~~~SPD--G~-~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~--~---- 290 (435)
T PRK05137 224 GRPRVYLLDLETGQRELVGNFPG----MTFAPRFSPD--GR-KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP--A---- 290 (435)
T ss_pred CCCEEEEEECCCCcEEEeecCCC----cccCcEECCC--CC-EEEEEEecCCCceEEEEECCCCceEEccCCC--C----
Confidence 34689999999998887754331 1123344441 22 2332222223455666788777655443210 0
Q ss_pred eeccceEEEeCCe-EEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCC-eEEEEEECCCeEEEEEEc
Q 043460 194 FYVLQSVYSRGGI-LYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKG-ALNYASRNQSTLLIWQLD 268 (368)
Q Consensus 194 ~~~~~~v~~~~G~-lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G-~L~~~~~~~~~~~IW~l~ 268 (368)
........- +|. +++... ...|..+|..+++.+ .+........ .... ..+| .|+++..+.....||.++
T Consensus 291 ~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~---~~~~-SpdG~~ia~~~~~~~~~~i~~~d 364 (435)
T PRK05137 291 IDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS---TPVW-SPRGDLIAFTKQGGGQFSIGVMK 364 (435)
T ss_pred ccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc---CeEE-CCCCCEEEEEEcCCCceEEEEEE
Confidence 000111222 443 444432 346888898887776 4332111000 1121 2355 455555544456777776
Q ss_pred cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-e---C---CeEEEEECCCCeEE
Q 043460 269 DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-S---C---DMIYRYHLKTNKME 341 (368)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~---~---~~~~~ydl~t~~~~ 341 (368)
-.++ .... +.... . ..-..+.++|..|++. . . ..++.+|+++++.+
T Consensus 365 ~~~~---------------~~~~---lt~~~-~--------~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~ 417 (435)
T PRK05137 365 PDGS---------------GERI---LTSGF-L--------VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER 417 (435)
T ss_pred CCCC---------------ceEe---ccCCC-C--------CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence 5332 2221 11110 0 0113457778777665 1 1 47999999998888
Q ss_pred Eecc
Q 043460 342 LFST 345 (368)
Q Consensus 342 ~v~~ 345 (368)
++..
T Consensus 418 ~l~~ 421 (435)
T PRK05137 418 EVPT 421 (435)
T ss_pred EccC
Confidence 7765
No 69
>PRK04043 tolB translocation protein TolB; Provisional
Probab=79.59 E-value=62 Score=31.35 Aligned_cols=183 Identities=11% Similarity=0.076 Sum_probs=101.3
Q ss_pred CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceee
Q 043460 115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSF 194 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~ 194 (368)
...+++.|..|++.+.|-..+... ....+.| .+.. ++......+...+.+++..++.++.......
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~----~~~~~SP--DG~~-la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~------- 277 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGML----VVSDVSK--DGSK-LLLTMAPKGQPDIYLYDTNTKTLTQITNYPG------- 277 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcE----EeeEECC--CCCE-EEEEEccCCCcEEEEEECCCCcEEEcccCCC-------
Confidence 468999999999988885433110 1112333 2233 3333332355678888888898887653211
Q ss_pred eccceEEEeCC-eEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCe-EEEEEECC------CeEE
Q 043460 195 YVLQSVYSRGG-ILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGA-LNYASRNQ------STLL 263 (368)
Q Consensus 195 ~~~~~v~~~~G-~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~-L~~~~~~~------~~~~ 263 (368)
....+.+.-+| .||+... ...|..+|+.+++.+ .+-. ... . ... ...+|+ |.++.... ...+
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-rlt~--~g~-~--~~~-~SPDG~~Ia~~~~~~~~~~~~~~~~ 350 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-QVVF--HGK-N--NSS-VSTYKNYIVYSSRETNNEFGKNTFN 350 (419)
T ss_pred ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-eCcc--CCC-c--Cce-ECCCCCEEEEEEcCCCcccCCCCcE
Confidence 01111111155 5777764 347999999988886 3221 111 1 112 233554 55554422 2368
Q ss_pred EEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCe
Q 043460 264 IWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNK 339 (368)
Q Consensus 264 IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~ 339 (368)
|+.++-.++ ++..+..-. .. .. ..+.++|..|++. ....+..++++.++
T Consensus 351 I~v~d~~~g---------------~~~~LT~~~---~~--------~~-p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 351 LYLISTNSD---------------YIRRLTANG---VN--------QF-PRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred EEEEECCCC---------------CeEECCCCC---Cc--------CC-eEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 888876544 454433211 00 11 3467888877665 33469999999988
Q ss_pred EEEecc
Q 043460 340 MELFST 345 (368)
Q Consensus 340 ~~~v~~ 345 (368)
-+++..
T Consensus 404 ~~~l~~ 409 (419)
T PRK04043 404 SFLFPL 409 (419)
T ss_pred eEEeec
Confidence 777754
No 70
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=78.95 E-value=61 Score=30.90 Aligned_cols=107 Identities=12% Similarity=0.026 Sum_probs=61.5
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC--cee
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT--WIT 181 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~--W~~ 181 (368)
+|.|.+.. ....++..|+.|++.++--+... . ..+..+ .=+|+... ..-.+..++..+|. |+.
T Consensus 256 ~~~vy~~~--~~g~l~ald~~tG~~~W~~~~~~--~---~~~~~~-----~~~vy~~~---~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 256 GGVVYALA--YNGNLVALDLRSGQIVWKREYGS--V---NDFAVD-----GGRIYLVD---QNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred CCEEEEEE--cCCeEEEEECCCCCEEEeecCCC--c---cCcEEE-----CCEEEEEc---CCCeEEEEECCCCcEEEcc
Confidence 56666554 45688889999987544211110 0 011111 11233222 23456667777764 765
Q ss_pred ccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCC
Q 043460 182 RKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVP 233 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP 233 (368)
... . ......++.. +|.+|....++.+.++|..+++.....+++
T Consensus 321 ~~~--~-----~~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 321 SDL--L-----HRLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred ccc--C-----CCcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 431 0 1123446778 999999887889999999998765345554
No 71
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.57 E-value=48 Score=29.49 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=86.5
Q ss_pred EEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe----CCeEEEEEcCC----CeEEEEEeCCCCCCCC
Q 043460 168 EVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----RSTILRYNIEA----LSEAEIIEVPDKNNHP 239 (368)
Q Consensus 168 ~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----~~~il~fD~~~----~~~~~~~~lP~~~~~~ 239 (368)
...+|+..+++++...... ..++.+..+.- ||.+.-..+ ...+..|++.+ ..|. ..+..+...
T Consensus 47 ~s~~yD~~tn~~rpl~v~t-----d~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~---e~~~~m~~~ 117 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQT-----DTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWT---ESPNDMQSG 117 (243)
T ss_pred EEEEEecCCCcEEeccCCC-----CCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCce---ECcccccCC
Confidence 4667999999998876421 22344445555 777766554 45688888876 4555 333322211
Q ss_pred -CCceeEEeeCCeEEEEEEC-CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEec
Q 043460 240 -CDSEVIGLCKGALNYASRN-QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHP 317 (368)
Q Consensus 240 -~~~~~l~~~~G~L~~~~~~-~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
+-.......+|++.+++.. ..+.++|=-+.... +...|....... ..... ...-.+.+.+
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~------------~~~~~~~l~~~~-~~~~~-----nlYP~~~llP 179 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP------------GPVTLPFLSQTS-DTLPN-----NLYPFVHLLP 179 (243)
T ss_pred CccccceECCCCCEEEEeCcCCCcccccCCccCCC------------Cceeeecchhhh-ccCcc-----ccCceEEEcC
Confidence 1123444568999888874 33455543221111 011222221111 00110 1122244567
Q ss_pred CCCEEEEeeCCeEEEEECCCCeE-EEecc--CCCcceeeeeeeeeccc
Q 043460 318 NSDIIFLGSCDMIYRYHLKTNKM-ELFST--RSPLHLYRLALLSSCRA 362 (368)
Q Consensus 318 ~~~~v~~~~~~~~~~ydl~t~~~-~~v~~--~~~~~~~~~~py~p~~~ 362 (368)
+|+++++. ...-..||.+++++ +++.. +. .+.+|...+-+
T Consensus 180 dG~lFi~a-n~~s~i~d~~~n~v~~~lP~lPg~----~R~YP~sgssv 222 (243)
T PF07250_consen 180 DGNLFIFA-NRGSIIYDYKTNTVVRTLPDLPGG----PRNYPASGSSV 222 (243)
T ss_pred CCCEEEEE-cCCcEEEeCCCCeEEeeCCCCCCC----ceecCCCcceE
Confidence 77765554 45677789999987 66766 32 24677655544
No 72
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=78.31 E-value=45 Score=29.01 Aligned_cols=29 Identities=14% Similarity=0.385 Sum_probs=22.5
Q ss_pred CCeEEEEEeCCeEEEEEcCCCeEEEEEeCCC
Q 043460 204 GGILYNLTYRSTILRYNIEALSEAEIIEVPD 234 (368)
Q Consensus 204 ~G~lywl~~~~~il~fD~~~~~~~~~~~lP~ 234 (368)
||.+ .+.....+.+.|+.|+++. .++.|.
T Consensus 5 nGLl-c~~~~~~~~V~NP~T~~~~-~LP~~~ 33 (230)
T TIGR01640 5 DGLI-CFSYGKRLVVWNPSTGQSR-WLPTPK 33 (230)
T ss_pred ceEE-EEecCCcEEEECCCCCCEE-ecCCCC
Confidence 8888 3443578999999999999 776554
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=77.68 E-value=60 Score=31.50 Aligned_cols=176 Identities=12% Similarity=0.130 Sum_probs=91.9
Q ss_pred cccCccceecCCCC-cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceE
Q 043460 122 NPLTKQCVAIPKAR-EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSV 200 (368)
Q Consensus 122 NP~T~~~~~lP~~~-~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v 200 (368)
+|-++-|++.--++ .........+.+.|.. .|.++... ...+++|++.+.+=...-...... ..+-.+
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~--P~d~aVt~----S~rvqly~~~~~~~~k~~srFk~~-----v~s~~f 76 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNSVSSLCFSPKH--PYDFAVTS----SVRVQLYSSVTRSVRKTFSRFKDV-----VYSVDF 76 (487)
T ss_pred CccchhhhhhcccccccccCcceeEecCCCC--CCceEEec----ccEEEEEecchhhhhhhHHhhccc-----eeEEEe
Confidence 45556666653333 1223456677777743 34433333 467999999886533211100100 111123
Q ss_pred EEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCC
Q 043460 201 YSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGS 279 (368)
Q Consensus 201 ~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~ 279 (368)
.- ||.|...+. .+.+-+||..+...-..+..-..... ......-++.+.+.+.|+....+|.+.. .
T Consensus 77 R~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~---~~~f~~~d~t~l~s~sDd~v~k~~d~s~--a------- 143 (487)
T KOG0310|consen 77 RS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVH---VTKFSPQDNTMLVSGSDDKVVKYWDLST--A------- 143 (487)
T ss_pred ec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCcee---EEEecccCCeEEEecCCCceEEEEEcCC--c-------
Confidence 34 799988887 68899999554221101111111000 1122223455555555788899999987 2
Q ss_pred ccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCe
Q 043460 280 NKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNK 339 (368)
Q Consensus 280 ~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~ 339 (368)
-+ ...+.-.. ..++-..+.+..+=|++. .++.+-.||.++..
T Consensus 144 ---------~v-~~~l~~ht--------DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 144 ---------YV-QAELSGHT--------DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT 187 (487)
T ss_pred ---------EE-EEEecCCc--------ceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence 22 33333110 234445566644444444 56678889998886
No 74
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=76.53 E-value=67 Score=30.34 Aligned_cols=119 Identities=12% Similarity=0.010 Sum_probs=74.0
Q ss_pred eEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCC-eEEEEEE---------CCCeEEEEEEc
Q 043460 199 SVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKG-ALNYASR---------NQSTLLIWQLD 268 (368)
Q Consensus 199 ~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G-~L~~~~~---------~~~~~~IW~l~ 268 (368)
-+|+ .+.-+|... +.|.++|..+.+....++.-.... .+...+| .||++.. ++..+.||-.+
T Consensus 14 ~v~V-~d~~~~~~~-~~v~ViD~~~~~v~g~i~~G~~P~------~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 14 RVYV-LDPGHFAAT-TQVYTIDGEAGRVLGMTDGGFLPN------PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred EEEE-ECCcccccC-ceEEEEECCCCEEEEEEEccCCCc------eeECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 3777 666666653 889999999988754666543221 1233455 4666665 45667777665
Q ss_pred cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--e-CCeEEEEECCCCeEE-Eec
Q 043460 269 DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--S-CDMIYRYHLKTNKME-LFS 344 (368)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~-~~~~~~ydl~t~~~~-~v~ 344 (368)
. ...+.+|+.+.-++... ......+++.++|..+|+. + ...+-++|++++++- ++.
T Consensus 86 t-------------------~~~~~~i~~p~~p~~~~-~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 86 T-------------------HLPIADIELPEGPRFLV-GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred c-------------------CcEEeEEccCCCchhhc-cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 5 34455565322111100 0123456788899999987 3 678999999999974 466
Q ss_pred c
Q 043460 345 T 345 (368)
Q Consensus 345 ~ 345 (368)
.
T Consensus 146 v 146 (352)
T TIGR02658 146 V 146 (352)
T ss_pred C
Confidence 5
No 75
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=76.30 E-value=12 Score=35.84 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=51.0
Q ss_pred EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCC-EEEEe-eCCe
Q 043460 252 LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSD-IIFLG-SCDM 329 (368)
Q Consensus 252 L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~~~ 329 (368)
|.++..-+.+++|+.++...+ . ++.+|-+..++- .-..|.++|. .|+.. ...-
T Consensus 227 lllvaG~d~~lrifqvDGk~N---------------~--~lqS~~l~~fPi--------~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 227 LLLVAGLDGTLRIFQVDGKVN---------------P--KLQSIHLEKFPI--------QKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred eEEEecCCCcEEEEEecCccC---------------h--hheeeeeccCcc--------ceeeecCCCceEEEecccceE
Confidence 455555577899999988644 3 677777666552 2245777887 56655 4456
Q ss_pred EEEEECCCCeEEEecc--CCC
Q 043460 330 IYRYHLKTNKMELFST--RSP 348 (368)
Q Consensus 330 ~~~ydl~t~~~~~v~~--~~~ 348 (368)
++.|||++.|++++.. |.+
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVE 302 (514)
T ss_pred EEEeeccccccccccCCCCcc
Confidence 9999999999999987 554
No 76
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=74.53 E-value=72 Score=29.49 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=27.6
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCC
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNN 237 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~ 237 (368)
.+.|||..- ...|..+|+.+.+-+ +...|....
T Consensus 36 ~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~ 69 (307)
T COG3386 36 RGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFS 69 (307)
T ss_pred CCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcc
Confidence 466888776 789999999999999 899987653
No 77
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=74.52 E-value=18 Score=22.43 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=29.9
Q ss_pred eeEEeeCCeEEEEEEC----CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee
Q 043460 243 EVIGLCKGALNYASRN----QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC 296 (368)
Q Consensus 243 ~~l~~~~G~L~~~~~~----~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~ 296 (368)
..++..+++|++++.. ...-.++.++-..+ .|+.+..|+
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~---------------~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETN---------------TWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTT---------------EEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCC---------------EEEEcCCCC
Confidence 4677889999999982 23457788887766 899998774
No 78
>smart00612 Kelch Kelch domain.
Probab=74.14 E-value=7.6 Score=23.81 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=16.0
Q ss_pred CeEEEEEcCCCeEEEEEeCCCC
Q 043460 214 STILRYNIEALSEAEIIEVPDK 235 (368)
Q Consensus 214 ~~il~fD~~~~~~~~~~~lP~~ 235 (368)
..+..||+.+.+|+..-++|..
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCc
Confidence 4688899999999933345543
No 79
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=73.96 E-value=10 Score=23.95 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=19.1
Q ss_pred eEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEE
Q 043460 199 SVYSRGGILYNLTY-------RSTILRYNIEALSEAEII 230 (368)
Q Consensus 199 ~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~ 230 (368)
++.+.++.+|..++ -..+..||+.+.+|+ .+
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~-~~ 44 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWT-RL 44 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEE-E-
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEE-EC
Confidence 44442477777776 347899999999999 54
No 80
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=73.50 E-value=76 Score=29.24 Aligned_cols=170 Identities=12% Similarity=0.154 Sum_probs=89.2
Q ss_pred CCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCC-CCceecc---ccC-CCCCceeeeccceEEEeCCe-EEEEEe-CC
Q 043460 142 PPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSEN-KTWITRK---VSV-KPRRPVSFYVLQSVYSRGGI-LYNLTY-RS 214 (368)
Q Consensus 142 ~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~-~~W~~~~---~~~-~~~~p~~~~~~~~v~~~~G~-lywl~~-~~ 214 (368)
.+++.++|. +++-++.-. ..-.+.||+..+ +.-.... ... ....|.. .++..+|. +|.... .+
T Consensus 128 ~~~~~~~p~--g~~l~v~~~---~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~-----~~~~pdg~~lyv~~~~~~ 197 (330)
T PRK11028 128 CHSANIDPD--NRTLWVPCL---KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRH-----MVFHPNQQYAYCVNELNS 197 (330)
T ss_pred ccEeEeCCC--CCEEEEeeC---CCCEEEEEEECCCCcccccCCCceecCCCCCCce-----EEECCCCCEEEEEecCCC
Confidence 345567772 344333222 356789999876 3322110 000 1111111 22221544 555554 78
Q ss_pred eEEEEEcC--CCeEEEE--E-eCCCCCCCCCCceeEE-eeCCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCC
Q 043460 215 TILRYNIE--ALSEAEI--I-EVPDKNNHPCDSEVIG-LCKGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGAR 287 (368)
Q Consensus 215 ~il~fD~~--~~~~~~~--~-~lP~~~~~~~~~~~l~-~~~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~ 287 (368)
.|.+||+. ++++... + .+|...........+. ..+|+ |++.......+.+|.++..++
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~--------------- 262 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS--------------- 262 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC---------------
Confidence 89999987 3454411 1 2343321111111122 33565 555444667899999987655
Q ss_pred ceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEE--ECCCCeEEEecc
Q 043460 288 SWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRY--HLKTNKMELFST 345 (368)
Q Consensus 288 ~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~y--dl~t~~~~~v~~ 345 (368)
.++.+..++....+ +-+.+.+++..+|.. ....+..| |.+++.++.+..
T Consensus 263 ~~~~~~~~~~~~~p---------~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~ 315 (330)
T PRK11028 263 VLSFEGHQPTETQP---------RGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGR 315 (330)
T ss_pred eEEEeEEEeccccC---------CceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccc
Confidence 67777776643222 225677888889987 34556666 456777777655
No 81
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=73.34 E-value=70 Score=28.80 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=74.3
Q ss_pred CCcEEEEEeCCCCCceeccccCCCCCceeeeccce-EEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCc
Q 043460 165 MDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQS-VYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDS 242 (368)
Q Consensus 165 ~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~-v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~ 242 (368)
+...+..|+..+|+=..... .++ . ..+.+ ..+ ++.+|-++. .+..++||..+-+-...++.|.+ .
T Consensus 66 G~S~l~~~d~~tg~~~~~~~-l~~----~-~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E------G 132 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVP-LPP----R-YFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE------G 132 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE--TT----T---EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS-------
T ss_pred CcEEEEEEECCCCcEEEEEE-CCc----c-ccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCc------c
Confidence 67789999999987433321 221 1 34554 556 999999999 78899999998655435666632 2
Q ss_pred eeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEE
Q 043460 243 EVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDII 322 (368)
Q Consensus 243 ~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 322 (368)
.-|+..+..|.+-... =.|+.++-. ....+.+|....-.......++ +-.+ ++.|
T Consensus 133 WGLt~dg~~Li~SDGS---~~L~~~dP~-----------------~f~~~~~i~V~~~g~pv~~LNE--LE~i---~G~I 187 (264)
T PF05096_consen 133 WGLTSDGKRLIMSDGS---SRLYFLDPE-----------------TFKEVRTIQVTDNGRPVSNLNE--LEYI---NGKI 187 (264)
T ss_dssp -EEEECSSCEEEE-SS---SEEEEE-TT-----------------T-SEEEEEE-EETTEE---EEE--EEEE---TTEE
T ss_pred eEEEcCCCEEEEECCc---cceEEECCc-----------------ccceEEEEEEEECCEECCCcEe--EEEE---cCEE
Confidence 3555444444444332 234445532 3344445542211100000011 1111 3456
Q ss_pred EEe--eCCeEEEEECCCCeEEEe
Q 043460 323 FLG--SCDMIYRYHLKTNKMELF 343 (368)
Q Consensus 323 ~~~--~~~~~~~ydl~t~~~~~v 343 (368)
|.- ....|++.|++|+++...
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEE
Confidence 664 677888889999888764
No 82
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=73.02 E-value=7.5 Score=28.66 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=15.9
Q ss_pred CCeEEEEECCCCeEEEecc
Q 043460 327 CDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 327 ~~~~~~ydl~t~~~~~v~~ 345 (368)
.++++.||++|++.+.+-.
T Consensus 36 ~GRll~ydp~t~~~~vl~~ 54 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLD 54 (89)
T ss_dssp -EEEEEEETTTTEEEEEEE
T ss_pred CcCEEEEECCCCeEEEehh
Confidence 5789999999999987755
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=71.85 E-value=92 Score=29.99 Aligned_cols=111 Identities=12% Similarity=0.244 Sum_probs=68.1
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeC-CeEEEEEECCCeEEEEEEccCCCCCCCCCCcc
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCK-GALNYASRNQSTLLIWQLDDHRHHSNSHGSNK 281 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~-G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~ 281 (368)
||.|+-.+. ++.+-.||+.... . +...|..... ...+...+ |.-.++..++..+.+|-|.+...
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~-~-~a~Fpght~~---vk~i~FsENGY~Lat~add~~V~lwDLRKl~n--------- 423 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQT-N-VAKFPGHTGP---VKAISFSENGYWLATAADDGSVKLWDLRKLKN--------- 423 (506)
T ss_pred CceEEeccCCCceEEEEEcCCcc-c-cccCCCCCCc---eeEEEeccCceEEEEEecCCeEEEEEehhhcc---------
Confidence 777777665 6778889999887 5 7778764321 23444554 44444444666799999988632
Q ss_pred CCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEEecc
Q 043460 282 AASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~v~~ 345 (368)
..++.++... .+.-+.+...|..+.+. .+-.++.|+-.|+.|+++..
T Consensus 424 ----------~kt~~l~~~~-------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 424 ----------FKTIQLDEKK-------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred ----------cceeeccccc-------cceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 2344433221 12224455555444444 45578888888999998765
No 84
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=70.50 E-value=69 Score=31.02 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=63.6
Q ss_pred CCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCcc
Q 043460 204 GGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNK 281 (368)
Q Consensus 204 ~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~ 281 (368)
+|. .-..++ ..++.+||+.+.+.. .+..|.......-..+-+..++...++...... |-.|.-.++
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~--I~lLhakT~--------- 335 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH--IHLLHAKTK--------- 335 (514)
T ss_pred CCceEEEecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCCeEEEcccCce--EEeehhhhh---------
Confidence 554 333333 789999999999999 888887665321112222334553333333333 333433334
Q ss_pred CCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEEec
Q 043460 282 AASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~v~ 344 (368)
+|.--..|+-. +.-+.+..++..|++. ..+.++.+|+++++....+
T Consensus 336 ------eli~s~KieG~-----------v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 336 ------ELITSFKIEGV-----------VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred ------hhhheeeeccE-----------EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 66665555411 1223444556666666 5678999999999866544
No 85
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=70.27 E-value=98 Score=29.16 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=27.7
Q ss_pred cceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCC
Q 043460 197 LQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDK 235 (368)
Q Consensus 197 ~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~ 235 (368)
..++.. +|.+|.....+.+.+||..+++-....+++..
T Consensus 59 ~~p~v~-~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~ 96 (377)
T TIGR03300 59 LQPAVA-GGKVYAADADGTVVALDAETGKRLWRVDLDER 96 (377)
T ss_pred cceEEE-CCEEEEECCCCeEEEEEccCCcEeeeecCCCC
Confidence 345777 99999988778999999887764424455543
No 86
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=69.93 E-value=1.8e+02 Score=32.07 Aligned_cols=159 Identities=10% Similarity=0.050 Sum_probs=83.4
Q ss_pred CCcEEEEeecCCCeeEEEEcccCccceecCCCC-----------cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEE
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAR-----------EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDI 171 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~-----------~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~v 171 (368)
.+|.+.+... ..+++.++|+.++....+-... ...+....+++++|. +++ ++.... ....+.+
T Consensus 693 ~~g~LyVad~-~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd--G~~-LYVADs--~n~~Irv 766 (1057)
T PLN02919 693 VNEKVYIAMA-GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPD--LKE-LYIADS--ESSSIRA 766 (1057)
T ss_pred CCCeEEEEEC-CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCC--CCE-EEEEEC--CCCeEEE
Confidence 3566655543 5567888898887665432110 011234456777772 233 332222 3567888
Q ss_pred EeCCCCCceeccccC---CCC--------Cc---eeeeccce--EEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeC-C
Q 043460 172 FSSENKTWITRKVSV---KPR--------RP---VSFYVLQS--VYSRGGILYNLTY-RSTILRYNIEALSEAEIIEV-P 233 (368)
Q Consensus 172 yss~~~~W~~~~~~~---~~~--------~p---~~~~~~~~--v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~l-P 233 (368)
|+..++.-....... +.. .+ ..+..-.+ +.- +|.+|.... ...|.+||+.+.... .+.- .
T Consensus 767 ~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G 844 (1057)
T PLN02919 767 LDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVT-TLAGTG 844 (1057)
T ss_pred EECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEE-EEeccC
Confidence 888876533211000 000 00 00001113 334 688887665 678999999988776 3321 1
Q ss_pred CCC-------CC-CCCceeEE-eeCCeEEEEEECCCeEEEEEEcc
Q 043460 234 DKN-------NH-PCDSEVIG-LCKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 234 ~~~-------~~-~~~~~~l~-~~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
... .. ......++ ..+|+|+++.....++++|-++.
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 100 00 00122333 34788888887777888887654
No 87
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=68.38 E-value=10 Score=22.84 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=19.6
Q ss_pred cceEEEeCCeEEEEEeCCeEEEEEcCC
Q 043460 197 LQSVYSRGGILYNLTYRSTILRYNIEA 223 (368)
Q Consensus 197 ~~~v~~~~G~lywl~~~~~il~fD~~~ 223 (368)
..+++. +|.+|.-..++.+.+||.++
T Consensus 15 ~~~~v~-~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVA-GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S--EEC-TSEEEEE-TTSEEEEEETT-
T ss_pred cCCEEE-CCEEEEEcCCCEEEEEeCCC
Confidence 445777 99999999889999999875
No 88
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=67.25 E-value=1.4e+02 Score=30.03 Aligned_cols=121 Identities=15% Similarity=0.104 Sum_probs=63.6
Q ss_pred cceEEEeCCeEEEEEeCCeEEEEEcCCCe--EEEEEeCCCCCCC--C--CCceeEEeeCCeEEEEEECCCeEEEEEEccC
Q 043460 197 LQSVYSRGGILYNLTYRSTILRYNIEALS--EAEIIEVPDKNNH--P--CDSEVIGLCKGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 197 ~~~v~~~~G~lywl~~~~~il~fD~~~~~--~~~~~~lP~~~~~--~--~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
..+++. +|.||.....+.|.++|..+++ |+.....|..... . .....++..+|++++...+. .+..|+..
T Consensus 63 stPvv~-~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg---~l~ALDa~ 138 (527)
T TIGR03075 63 SQPLVV-DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDA---RLVALDAK 138 (527)
T ss_pred cCCEEE-CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCC---EEEEEECC
Confidence 446888 9999998777889999998864 4411223322110 0 00122345567776654433 45566553
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEECCCCeEEEe
Q 043460 271 RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYHLKTNKMELF 343 (368)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~ydl~t~~~~~v 343 (368)
++ ...|..... +...-.. ....++. . ++.||+.. ...+++||.+|.+...-
T Consensus 139 TG-------------k~~W~~~~~-~~~~~~~-----~tssP~v-~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 139 TG-------------KVVWSKKNG-DYKAGYT-----ITAAPLV-V--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred CC-------------CEEeecccc-ccccccc-----ccCCcEE-E--CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 11 116765321 1110000 0112222 2 34566542 46899999999986543
No 89
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=66.87 E-value=5.5 Score=25.36 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=17.9
Q ss_pred eeEEEEcccCccceecCCCCc
Q 043460 116 HRYYVCNPLTKQCVAIPKARE 136 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~ 136 (368)
..++++||.|++|.+++..|.
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred cCEEEEECCCCEEEECCCCCC
Confidence 478999999999999977663
No 90
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=65.31 E-value=12 Score=23.79 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=28.2
Q ss_pred eEEeeCCeEEEEEEC------CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEe
Q 043460 244 VIGLCKGALNYASRN------QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSI 295 (368)
Q Consensus 244 ~l~~~~G~L~~~~~~------~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i 295 (368)
..+..+++|+++... ...-.+|+++..+. +|+.+..+
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~---------------~W~~~~~~ 48 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETN---------------QWTELSPM 48 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCC---------------EEeecCCC
Confidence 556789999999874 23468899998877 89987654
No 91
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=65.15 E-value=1.6e+02 Score=31.18 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=24.6
Q ss_pred cceEEEeCCeEEEEEeCCeEEEEEcCCCeE
Q 043460 197 LQSVYSRGGILYNLTYRSTILRYNIEALSE 226 (368)
Q Consensus 197 ~~~v~~~~G~lywl~~~~~il~fD~~~~~~ 226 (368)
..++.+ +|.+|.....+.+.++|..+++-
T Consensus 188 ~TPlvv-gg~lYv~t~~~~V~ALDa~TGk~ 216 (764)
T TIGR03074 188 ATPLKV-GDTLYLCTPHNKVIALDAATGKE 216 (764)
T ss_pred cCCEEE-CCEEEEECCCCeEEEEECCCCcE
Confidence 457999 99999988788999999997643
No 92
>PLN02772 guanylate kinase
Probab=64.68 E-value=49 Score=31.71 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=48.3
Q ss_pred ceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEEe----CCCCCCCCCCceeEEeeCCeEEEEEE-CCCeEEEE
Q 043460 198 QSVYSRGGILYNLTY-------RSTILRYNIEALSEAEIIE----VPDKNNHPCDSEVIGLCKGALNYASR-NQSTLLIW 265 (368)
Q Consensus 198 ~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~~----lP~~~~~~~~~~~l~~~~G~L~~~~~-~~~~~~IW 265 (368)
.++.+ ++++|.+++ ...+..||..+.+|. ... .|....+ ...+...+++|.++.. ....=.||
T Consensus 29 tav~i-gdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~-~P~V~G~~P~~r~G---hSa~v~~~~rilv~~~~~~~~~~~w 103 (398)
T PLN02772 29 TSVTI-GDKTYVIGGNHEGNTLSIGVQILDKITNNWV-SPIVLGTGPKPCKG---YSAVVLNKDRILVIKKGSAPDDSIW 103 (398)
T ss_pred eeEEE-CCEEEEEcccCCCccccceEEEEECCCCcEe-cccccCCCCCCCCc---ceEEEECCceEEEEeCCCCCccceE
Confidence 47888 999999997 237899999999998 432 2322222 3344455788888876 45567899
Q ss_pred EEccC
Q 043460 266 QLDDH 270 (368)
Q Consensus 266 ~l~~~ 270 (368)
.|+-+
T Consensus 104 ~l~~~ 108 (398)
T PLN02772 104 FLEVD 108 (398)
T ss_pred EEEcC
Confidence 99876
No 93
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=64.23 E-value=1.3e+02 Score=28.27 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=51.4
Q ss_pred CeeEEEEcccCccce---ecCCCC-cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCC
Q 043460 115 KHRYYVCNPLTKQCV---AIPKAR-EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRR 190 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~---~lP~~~-~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~ 190 (368)
..-+-+||+.|-+.. .||+-+ .........++.- .+=|-+.+.......++.|-+...++--..- ..|..
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls----~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei-~~PGC- 139 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALS----ADGKFLYVQNFTPATSVTVVDLAAKKVVGEI-DTPGC- 139 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-----TTSSEEEEEEESSSEEEEEEETTTTEEEEEE-EGTSE-
T ss_pred eeEEEEEecCcCcccceEecCCcchheecccccceEEc----cCCcEEEEEccCCCCeEEEEECCCCceeeee-cCCCE-
Confidence 344779999996544 477653 2111122223322 2333344445457888999999988753211 11211
Q ss_pred ceeeeccceEEEeCCeEEEEEeCCeEEEEEcCC
Q 043460 191 PVSFYVLQSVYSRGGILYNLTYRSTILRYNIEA 223 (368)
Q Consensus 191 p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~ 223 (368)
...... - +..++-+|+++.++.+.+..
T Consensus 140 -~~iyP~----~-~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 140 -WLIYPS----G-NRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp -EEEEEE----E-TTEEEEEETTSCEEEEEETS
T ss_pred -EEEEec----C-CCceEEEecCCceEEEEECC
Confidence 111111 1 56678888888888887773
No 94
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=63.86 E-value=31 Score=30.53 Aligned_cols=76 Identities=14% Similarity=0.257 Sum_probs=46.8
Q ss_pred CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCC
Q 043460 260 STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTN 338 (368)
Q Consensus 260 ~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~ 338 (368)
..+.=|..+|..+ + ..--..|+.+..+.....+-. .+.-+...+.++-|++. ++..++..|++++
T Consensus 81 G~V~gw~W~E~~e-s--------~~~K~lwe~~~P~~~~~~evP-----eINam~ldP~enSi~~AgGD~~~y~~dlE~G 146 (325)
T KOG0649|consen 81 GLVYGWEWNEEEE-S--------LATKRLWEVKIPMQVDAVEVP-----EINAMWLDPSENSILFAGGDGVIYQVDLEDG 146 (325)
T ss_pred ceEEEeeehhhhh-h--------ccchhhhhhcCccccCcccCC-----ccceeEeccCCCcEEEecCCeEEEEEEecCC
Confidence 5677787776522 0 011127888766653322211 23345566555545554 7889999999999
Q ss_pred eEEEeccCCCc
Q 043460 339 KMELFSTRSPL 349 (368)
Q Consensus 339 ~~~~v~~~~~~ 349 (368)
++++...|..+
T Consensus 147 ~i~r~~rGHtD 157 (325)
T KOG0649|consen 147 RIQREYRGHTD 157 (325)
T ss_pred EEEEEEcCCcc
Confidence 99999887764
No 95
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=63.75 E-value=1.2e+02 Score=28.67 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=68.4
Q ss_pred eEEEeCCeEEEEEeCCeEEEEEcCCCe--EEEEEeCC--CCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCC
Q 043460 199 SVYSRGGILYNLTYRSTILRYNIEALS--EAEIIEVP--DKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHS 274 (368)
Q Consensus 199 ~v~~~~G~lywl~~~~~il~fD~~~~~--~~~~~~lP--~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~ 274 (368)
+++. +|.+|.....+.|.+||+.+.+ |+ .-..+ ... ..-+...+|+|++-..+. +++.+++.++
T Consensus 64 ~~~~-dg~v~~~~~~G~i~A~d~~~g~~~W~-~~~~~~~~~~-----~~~~~~~~G~i~~g~~~g---~~y~ld~~~G-- 131 (370)
T COG1520 64 PADG-DGTVYVGTRDGNIFALNPDTGLVKWS-YPLLGAVAQL-----SGPILGSDGKIYVGSWDG---KLYALDASTG-- 131 (370)
T ss_pred cEee-CCeEEEecCCCcEEEEeCCCCcEEec-ccCcCcceec-----cCceEEeCCeEEEecccc---eEEEEECCCC--
Confidence 4888 9999999778899999999987 55 22222 111 112233488877766655 8888888421
Q ss_pred CCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEE
Q 043460 275 NSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 275 ~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~ 342 (368)
...|...... ...+. . ......+.||.. ...+++++|.+|.+...
T Consensus 132 -----------~~~W~~~~~~-~~~~~---------~--~~v~~~~~v~~~s~~g~~~al~~~tG~~~W 177 (370)
T COG1520 132 -----------TLVWSRNVGG-SPYYA---------S--PPVVGDGTVYVGTDDGHLYALNADTGTLKW 177 (370)
T ss_pred -----------cEEEEEecCC-CeEEe---------c--CcEEcCcEEEEecCCCeEEEEEccCCcEEE
Confidence 1278776544 10011 1 122235667776 57899999999777543
No 96
>PRK04922 tolB translocation protein TolB; Provisional
Probab=62.80 E-value=1.5e+02 Score=28.66 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=92.9
Q ss_pred CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceee
Q 043460 115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSF 194 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~ 194 (368)
...++++|..+++...+-..+. ......+.| .+.. ++......+...+.+++..++.-+.......
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g----~~~~~~~Sp--DG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~------- 292 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRG----INGAPSFSP--DGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFG------- 292 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCC----CccCceECC--CCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCC-------
Confidence 4578999999988776643331 112334444 1233 3322222245577888888877554431100
Q ss_pred eccc-eEEEeCCe-EEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCC-eEEEEEECCCeEEEEEEc
Q 043460 195 YVLQ-SVYSRGGI-LYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKG-ALNYASRNQSTLLIWQLD 268 (368)
Q Consensus 195 ~~~~-~v~~~~G~-lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G-~L~~~~~~~~~~~IW~l~ 268 (368)
.... ...- +|. +++... ...|..+|+.+.+.+ .+..... ....... ..+| .|++...+.....|+.++
T Consensus 293 ~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~---~~~~~~~-SpDG~~Ia~~~~~~~~~~I~v~d 366 (433)
T PRK04922 293 IDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGN---YNARASV-SPDGKKIAMVHGSGGQYRIAVMD 366 (433)
T ss_pred CccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCC---CccCEEE-CCCCCEEEEEECCCCceeEEEEE
Confidence 0111 1122 443 555443 235888898887776 4432111 1001222 2355 455554444445666655
Q ss_pred cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEEEec
Q 043460 269 DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~~v~ 344 (368)
-.++ ....+. ..... .. ..+.++|..|++. ....++.++++.+..+++.
T Consensus 367 ~~~g---------------~~~~Lt---~~~~~--------~~-p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 367 LSTG---------------SVRTLT---PGSLD--------ES-PSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred CCCC---------------CeEECC---CCCCC--------CC-ceECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence 4323 333221 11111 01 2467778766665 2457999999887777775
Q ss_pred c
Q 043460 345 T 345 (368)
Q Consensus 345 ~ 345 (368)
.
T Consensus 420 ~ 420 (433)
T PRK04922 420 S 420 (433)
T ss_pred c
Confidence 4
No 97
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=61.78 E-value=1.4e+02 Score=27.98 Aligned_cols=145 Identities=12% Similarity=0.076 Sum_probs=76.2
Q ss_pred cEEEecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC-----CC---cE
Q 043460 97 YALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR-----MD---PE 168 (368)
Q Consensus 97 ~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~-----~~---~~ 168 (368)
+..++..+.-|++.+ ......|+|+.|+....+|......... +.+.. .+. |+.+.... .. ..
T Consensus 69 ~~F~al~gskIv~~d--~~~~t~vyDt~t~av~~~P~l~~pk~~p-isv~V----G~~--LY~m~~~~~~~~~~~~~~~~ 139 (342)
T PF07893_consen 69 MDFFALHGSKIVAVD--QSGRTLVYDTDTRAVATGPRLHSPKRCP-ISVSV----GDK--LYAMDRSPFPEPAGRPDFPC 139 (342)
T ss_pred eEEEEecCCeEEEEc--CCCCeEEEECCCCeEeccCCCCCCCcce-EEEEe----CCe--EEEeeccCccccccCcccee
Confidence 344444444444443 3466899999999999999865322211 22221 122 44443332 00 04
Q ss_pred EEEE--e--------CCCCCceeccccCCCCCceeeec-------cceEEEeCCeEEEEEe-CC--eEEEEEcCCCeEEE
Q 043460 169 VDIF--S--------SENKTWITRKVSVKPRRPVSFYV-------LQSVYSRGGILYNLTY-RS--TILRYNIEALSEAE 228 (368)
Q Consensus 169 ~~vy--s--------s~~~~W~~~~~~~~~~~p~~~~~-------~~~v~~~~G~lywl~~-~~--~il~fD~~~~~~~~ 228 (368)
+|++ + ..+.+|+..+. | |+.... ..=+++ +|.--|+.. +. ...+||..+.+|+
T Consensus 140 FE~l~~~~~~~~~~~~~~w~W~~LP~--P---Pf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~- 212 (342)
T PF07893_consen 140 FEALVYRPPPDDPSPEESWSWRSLPP--P---PFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWR- 212 (342)
T ss_pred EEEeccccccccccCCCcceEEcCCC--C---CccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCccee-
Confidence 4444 3 22335666543 2 222211 111344 677666644 34 7999999999999
Q ss_pred EE---eCCCCCCCC---CCceeEEee--C--CeEEEEEE
Q 043460 229 II---EVPDKNNHP---CDSEVIGLC--K--GALNYASR 257 (368)
Q Consensus 229 ~~---~lP~~~~~~---~~~~~l~~~--~--G~L~~~~~ 257 (368)
.. .||...... .-+..++.+ + |.||.+..
T Consensus 213 ~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv 251 (342)
T PF07893_consen 213 KHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDV 251 (342)
T ss_pred eccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEec
Confidence 44 578754332 124455544 2 36777666
No 98
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=61.04 E-value=1.6e+02 Score=28.50 Aligned_cols=135 Identities=23% Similarity=0.238 Sum_probs=69.1
Q ss_pred CCcEEEEeecC---CCeeEEEEcccCccceecCCCCc--CCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC
Q 043460 103 CNGLILLGSSL---SKHRYYVCNPLTKQCVAIPKARE--DVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK 177 (368)
Q Consensus 103 ~~Glll~~~~~---~~~~~~v~NP~T~~~~~lP~~~~--~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~ 177 (368)
-+.|+|+...+ ..-+++|+|..|++..++-.... .......|+-|-. .|.+- .-...+|+-...
T Consensus 237 vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpg----GYyLq-------tGe~K~Fd~~~~ 305 (448)
T PF12458_consen 237 VGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPG----GYYLQ-------TGEYKTFDTDMD 305 (448)
T ss_pred cCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccC----ceEec-------cCCceeecccCC
Confidence 46677777652 23479999999999998866542 1122233433221 22211 122333333322
Q ss_pred CceeccccCCCCCceeeeccceEEEeCCeEEEEEe----CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEE
Q 043460 178 TWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALN 253 (368)
Q Consensus 178 ~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~ 253 (368)
.=+-... ...+++ ...+|.... ...++.|++-..+.. -|....+ .....+|.|+
T Consensus 306 ~l~F~r~-------vrSPNG------EDvLYvF~~~~~g~~~Ll~YN~I~k~v~----tPi~chG-----~alf~DG~l~ 363 (448)
T PF12458_consen 306 GLEFERK-------VRSPNG------EDVLYVFYAREEGRYLLLPYNLIRKEVA----TPIICHG-----YALFEDGRLV 363 (448)
T ss_pred CceEEEE-------ecCCCC------ceEEEEEEECCCCcEEEEechhhhhhhc----CCeeccc-----eeEecCCEEE
Confidence 1111000 000111 345666654 456778887766554 2322222 3335689999
Q ss_pred EEEEC--C----CeEEEEEEccC
Q 043460 254 YASRN--Q----STLLIWQLDDH 270 (368)
Q Consensus 254 ~~~~~--~----~~~~IW~l~~~ 270 (368)
+...+ + .-|+||+.--.
T Consensus 364 ~fra~~~EptrvHp~QiWqTPf~ 386 (448)
T PF12458_consen 364 YFRAEGDEPTRVHPMQIWQTPFV 386 (448)
T ss_pred EEecCCCCcceeccceeecCCcc
Confidence 98874 2 23899976543
No 99
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=60.82 E-value=27 Score=19.63 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=19.6
Q ss_pred CCeEEEEEeCCeEEEEEcCCCeEE
Q 043460 204 GGILYNLTYRSTILRYNIEALSEA 227 (368)
Q Consensus 204 ~G~lywl~~~~~il~fD~~~~~~~ 227 (368)
+|.+|.-..++.+.++|..+++..
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEE
Confidence 778888877899999999887544
No 100
>PRK04043 tolB translocation protein TolB; Provisional
Probab=60.08 E-value=1.7e+02 Score=28.34 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=60.5
Q ss_pred CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCC-eEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEE
Q 043460 213 RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKG-ALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWIL 291 (368)
Q Consensus 213 ~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G-~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~ 291 (368)
...|..+|+.+++-+ .+.-...... ... ...|| +|.+.......-+||.++-.++ .+..
T Consensus 212 ~~~Iyv~dl~tg~~~-~lt~~~g~~~---~~~-~SPDG~~la~~~~~~g~~~Iy~~dl~~g---------------~~~~ 271 (419)
T PRK04043 212 KPTLYKYNLYTGKKE-KIASSQGMLV---VSD-VSKDGSKLLLTMAPKGQPDIYLYDTNTK---------------TLTQ 271 (419)
T ss_pred CCEEEEEECCCCcEE-EEecCCCcEE---eeE-ECCCCCEEEEEEccCCCcEEEEEECCCC---------------cEEE
Confidence 457999999988877 4432222111 011 23366 5655555455678999986544 5655
Q ss_pred EEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEEEecc
Q 043460 292 KHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~~v~~ 345 (368)
+...+. .. .. ..+.++|.-|++. ....|+.+|+++++.+++..
T Consensus 272 LT~~~~--~d--------~~-p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 272 ITNYPG--ID--------VN-GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred cccCCC--cc--------Cc-cEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 432221 10 11 1356777766665 23489999999999988765
No 101
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=57.96 E-value=18 Score=35.31 Aligned_cols=128 Identities=14% Similarity=0.244 Sum_probs=78.4
Q ss_pred ceEEEeCC--eEEEEEe-C-----CeEEEEEcCCCeEEEEEeCCCCCC--CCCCceeEEeeCCeEEEEEE---------C
Q 043460 198 QSVYSRGG--ILYNLTY-R-----STILRYNIEALSEAEIIEVPDKNN--HPCDSEVIGLCKGALNYASR---------N 258 (368)
Q Consensus 198 ~~v~~~~G--~lywl~~-~-----~~il~fD~~~~~~~~~~~lP~~~~--~~~~~~~l~~~~G~L~~~~~---------~ 258 (368)
+.|+. .| ++|.-++ + ...-+|......|. .+..-.... ..++..++-++.-+|++.+. .
T Consensus 265 QMV~~-~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~-~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~ 342 (723)
T KOG2437|consen 265 QMVID-VQTECVYLYGGWDGTQDLADFWAYSVKENQWT-CINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSK 342 (723)
T ss_pred eEEEe-CCCcEEEEecCcccchhHHHHHhhcCCcceeE-EeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccccccc
Confidence 47887 77 8998876 1 34567888889999 775433221 23334455566678887764 1
Q ss_pred CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----------eCC
Q 043460 259 QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----------SCD 328 (368)
Q Consensus 259 ~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------~~~ 328 (368)
..+-.+|+.+-+++ .|.... ++-..=+. +....-+-+.+..+..+||+. .-.
T Consensus 343 s~RsDfW~FDi~~~---------------~W~~ls-~dt~~dGG--P~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~ 404 (723)
T KOG2437|consen 343 SLRSDFWRFDIDTN---------------TWMLLS-EDTAADGG--PKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFS 404 (723)
T ss_pred ccccceEEEecCCc---------------eeEEec-ccccccCC--cceeecceeeEecCcceEEEecCeeccCCCcccc
Confidence 23568999999877 798743 33111010 000111224455566777775 235
Q ss_pred eEEEEECCCCeEEEecc
Q 043460 329 MIYRYHLKTNKMELFST 345 (368)
Q Consensus 329 ~~~~ydl~t~~~~~v~~ 345 (368)
.+|+||.....|+.+..
T Consensus 405 GLYaf~~~~~~w~~l~e 421 (723)
T KOG2437|consen 405 GLYAFNCQCQTWKLLRE 421 (723)
T ss_pred ceEEEecCCccHHHHHH
Confidence 79999999999887654
No 102
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=57.31 E-value=1.4e+02 Score=26.54 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=51.8
Q ss_pred ceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCC--------CCceeEEeeCCeEEEEEE---C
Q 043460 191 PVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHP--------CDSEVIGLCKGALNYASR---N 258 (368)
Q Consensus 191 p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~--------~~~~~l~~~~G~L~~~~~---~ 258 (368)
|..+....-|+. +|.+|.... ...|+.||+.++.-.....+|...... ....-+++.+..|.++.. +
T Consensus 65 p~~~~gTg~VVy-nGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~ 143 (249)
T KOG3545|consen 65 PYSWDGTGHVVY-NGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPEN 143 (249)
T ss_pred CCCccccceEEE-cceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEeccccc
Confidence 344444446888 999999887 678999999996554355677643221 224556666666777665 3
Q ss_pred CCeEEEEEEccC
Q 043460 259 QSTLLIWQLDDH 270 (368)
Q Consensus 259 ~~~~~IW~l~~~ 270 (368)
..++.|-.|+..
T Consensus 144 ~g~iv~skLdp~ 155 (249)
T KOG3545|consen 144 AGTIVLSKLDPE 155 (249)
T ss_pred CCcEEeeccCHH
Confidence 445667777764
No 103
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=56.60 E-value=1.4e+02 Score=26.29 Aligned_cols=185 Identities=12% Similarity=0.075 Sum_probs=90.6
Q ss_pred CCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 114 SKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
....+.+||+.+++... ++... ....+.++|. ++ +++.... ....+.+|+.+++.- .........+.
T Consensus 51 ~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~--g~-~l~~~~~--~~~~l~~~d~~~~~~--~~~~~~~~~~~ 118 (300)
T TIGR03866 51 DSDTIQVIDLATGEVIGTLPSGP-----DPELFALHPN--GK-ILYIANE--DDNLVTVIDIETRKV--LAEIPVGVEPE 118 (300)
T ss_pred CCCeEEEEECCCCcEEEeccCCC-----CccEEEECCC--CC-EEEEEcC--CCCeEEEEECCCCeE--EeEeeCCCCcc
Confidence 45678899999887654 44321 1234566662 22 3332221 234688888877531 11000000011
Q ss_pred eeeccceEEEeCCeEEEEEeC--CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEE-CCCeEEEEEEcc
Q 043460 193 SFYVLQSVYSRGGILYNLTYR--STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASR-NQSTLLIWQLDD 269 (368)
Q Consensus 193 ~~~~~~~v~~~~G~lywl~~~--~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~-~~~~~~IW~l~~ 269 (368)
. -.+.- +|.+.+.+.. ..+..+|..+.+....+..+... .......+|+..++.. .+..+.+|-++.
T Consensus 119 ~----~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 119 G----MAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRP-----RFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred e----EEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCc-----cEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 1 11222 5666555542 34667788776554233222111 1122233666554444 467889997765
Q ss_pred CCCCCCCCCCccCCCCCCceEEEEEeeec--cccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEE
Q 043460 270 HRHHSNSHGSNKAASGARSWILKHSICMD--EWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~W~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~ 342 (368)
. + .+..+... ...... ....-+.+.+++..+|+. ....+..||+++.+...
T Consensus 189 ~-----------------~--~~~~~~~~~~~~~~~~---~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 189 R-----------------K--VIKKITFEIPGVHPEA---VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred c-----------------e--eeeeeeeccccccccc---CCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 3 1 11222211 110000 001114467778877765 45679999999888754
No 104
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=56.45 E-value=2.2e+02 Score=28.54 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=22.7
Q ss_pred eEEEeCCeEEEEEeCCeEEEEEcCCCeEE
Q 043460 199 SVYSRGGILYNLTYRSTILRYNIEALSEA 227 (368)
Q Consensus 199 ~v~~~~G~lywl~~~~~il~fD~~~~~~~ 227 (368)
.++. +|.+|.-..++.++++|..+++..
T Consensus 116 ~av~-~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 116 VALY-DGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred ceEE-CCEEEEEcCCCEEEEEECCCCCEE
Confidence 4666 899998777889999999887554
No 105
>PF13013 F-box-like_2: F-box-like domain
Probab=56.10 E-value=13 Score=28.50 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHcCCCchhhHHHhhhhH
Q 043460 4 IYLSEDLITEILSRLPVKSVVGFKIVSK 31 (368)
Q Consensus 4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck 31 (368)
.+||+||+..|+..-..+.+...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4799999999999999888876666666
No 106
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.49 E-value=2.1e+02 Score=27.47 Aligned_cols=131 Identities=14% Similarity=0.183 Sum_probs=66.1
Q ss_pred eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCC---CCceeccccCCCCCce
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSEN---KTWITRKVSVKPRRPV 192 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~---~~W~~~~~~~~~~~p~ 192 (368)
..+.+||-.||+.+.+=+.. .......-+.-| +.++.|+-.. ...+-..+... +.|+.+.. +..
T Consensus 291 e~~~lwDv~tgd~~~~y~~~--~~~S~~sc~W~p---Dg~~~V~Gs~---dr~i~~wdlDgn~~~~W~gvr~--~~v--- 357 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSG--LGFSVSSCAWCP---DGFRFVTGSP---DRTIIMWDLDGNILGNWEGVRD--PKV--- 357 (519)
T ss_pred HheeeccCCcchhhhhcccC--cCCCcceeEEcc---CCceeEecCC---CCcEEEecCCcchhhccccccc--cee---
Confidence 34556666666666542222 111222233333 2344443322 23344444443 57887653 111
Q ss_pred eeeccceEEEeCCe-EEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEEEEcc
Q 043460 193 SFYVLQSVYSRGGI-LYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 193 ~~~~~~~v~~~~G~-lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
..-++.- +|. ++-++.+..|.-|+.++..-+..+..-.. ...... -+|++.++......+++|-+++
T Consensus 358 ---~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~------its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 358 ---HDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQP------ITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred ---EEEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCc------eeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 1112333 443 45455566677777766544312222111 123333 3789999999989999999985
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=48.55 E-value=1.9e+02 Score=25.42 Aligned_cols=178 Identities=11% Similarity=0.099 Sum_probs=87.7
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....+.+||+.|++....-... ....++.++|. +.+ ++.... ....+.+|+..++.....-.. ...+..
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~----~~~~~l~~~~d--g~~-l~~~~~--~~~~v~~~d~~~~~~~~~~~~--~~~~~~ 77 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVG----QRPRGITLSKD--GKL-LYVCAS--DSDTIQVIDLATGEVIGTLPS--GPDPEL 77 (300)
T ss_pred CCCEEEEEECCCCceEEEEECC----CCCCceEECCC--CCE-EEEEEC--CCCeEEEEECCCCcEEEeccC--CCCccE
Confidence 4567888999887754421111 11235667662 333 322222 345688899888765432110 010111
Q ss_pred eeccceEEEeCCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCC-eEEEEEEccC
Q 043460 194 FYVLQSVYSRGGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQS-TLLIWQLDDH 270 (368)
Q Consensus 194 ~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~-~~~IW~l~~~ 270 (368)
-.+.- +|. +|.... ++.+..+|+.+.+....++.+... .......+|.+.++...+. .+.+|-++.
T Consensus 78 ----~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-----~~~~~~~dg~~l~~~~~~~~~~~~~d~~~- 146 (300)
T TIGR03866 78 ----FALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEP-----EGMAVSPDGKIVVNTSETTNMAHFIDTKT- 146 (300)
T ss_pred ----EEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCc-----ceEEECCCCCEEEEEecCCCeEEEEeCCC-
Confidence 01222 444 443333 578999999886533133322111 1122234677666655433 334443222
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeE
Q 043460 271 RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKM 340 (368)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~ 340 (368)
......+.... ...-+.+.+++..+++. ....+..||+++.+.
T Consensus 147 ------------------~~~~~~~~~~~---------~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 147 ------------------YEIVDNVLVDQ---------RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred ------------------CeEEEEEEcCC---------CccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 22222222111 11224566777777665 356789999988765
No 108
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=46.70 E-value=58 Score=24.92 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=28.6
Q ss_pred CeeEEEEcccCc-cceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEE
Q 043460 115 KHRYYVCNPLTK-QCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLR 162 (368)
Q Consensus 115 ~~~~~v~NP~T~-~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~ 162 (368)
..+++++||.|+ .|...- + ....+.+-+|+ ..+.|+||.+..
T Consensus 10 rA~V~~yd~~tKk~WvPs~--~---~~~~V~~y~~~-~~ntfRIi~~~~ 52 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPAS--K---HAVTVSYFYDS-TRNVYRIISVGG 52 (111)
T ss_pred eeEEEEECCCCcceeEeCC--C---CceeEEEEecC-CCcEEEEEEecC
Confidence 347899999986 776433 2 12345566787 578999998653
No 109
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=45.55 E-value=59 Score=25.06 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=28.2
Q ss_pred eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEE
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLR 162 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~ 162 (368)
..+.+.||.|+.|. |..........+.+-+++ ..+.|+|+....
T Consensus 9 A~Vm~~d~~tk~W~--P~~~~~~~ls~V~~~~~~-~~~~yrIvg~~~ 52 (111)
T cd01207 9 ASVMVYDDSNKKWV--PAGGGSQGFSRVQIYHHP-RNNTFRVVGRKL 52 (111)
T ss_pred EEeeEEcCCCCcEE--cCCCCCCCcceEEEEEcC-CCCEEEEEEeec
Confidence 46789999999855 443311223345566677 467899987653
No 110
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=45.50 E-value=13 Score=34.54 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHcCCC--------chhhHHHhhhhHHHHhhhcCC
Q 043460 4 IYLSEDLITEILSRLP--------VKSVVGFKIVSKTWNNLISKV 40 (368)
Q Consensus 4 ~~LP~Dll~~IL~rLp--------~~~l~r~r~Vck~Wr~li~~~ 40 (368)
+.||.++|.+|+.|.. -++.+.++.||+.||....+.
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 4799999999999886 346889999999999977653
No 111
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=45.27 E-value=3.2e+02 Score=27.18 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=49.0
Q ss_pred CCCeEEEEEEEeC--CCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-----------------
Q 043460 152 SSHYKIIRFLRAR--MDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----------------- 212 (368)
Q Consensus 152 ~~~ykvv~~~~~~--~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----------------- 212 (368)
++.-|.+.++... .--.+...++++-.|...... ...|+.-.-+.++.+ ++++|..++
T Consensus 213 s~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~--G~~PlPRSLHsa~~I-GnKMyvfGGWVPl~~~~~~~~~hekE 289 (830)
T KOG4152|consen 213 SKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLS--GVAPLPRSLHSATTI-GNKMYVFGGWVPLVMDDVKVATHEKE 289 (830)
T ss_pred CCcceEEEEcccccccccceeEEecceeeccccccc--CCCCCCcccccceee-cceeEEecceeeeeccccccccccce
Confidence 3455555554433 344677889999999887632 112222222446778 888888765
Q ss_pred ---CCeEEEEEcCCCeEEEEEeC
Q 043460 213 ---RSTILRYNIEALSEAEIIEV 232 (368)
Q Consensus 213 ---~~~il~fD~~~~~~~~~~~l 232 (368)
...+-.+++.+..|. .+.+
T Consensus 290 WkCTssl~clNldt~~W~-tl~~ 311 (830)
T KOG4152|consen 290 WKCTSSLACLNLDTMAWE-TLLM 311 (830)
T ss_pred eeeccceeeeeecchhee-eeee
Confidence 356778899999998 5544
No 112
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=44.79 E-value=59 Score=19.24 Aligned_cols=29 Identities=10% Similarity=-0.026 Sum_probs=20.3
Q ss_pred CeEEEEEeCCeEEEEEcCCCeEEEEEeCC
Q 043460 205 GILYNLTYRSTILRYNIEALSEAEIIEVP 233 (368)
Q Consensus 205 G~lywl~~~~~il~fD~~~~~~~~~~~lP 233 (368)
|.+|.-...+.+.++|..+++.....+..
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 46677755889999999998665344443
No 113
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=44.67 E-value=3.2e+02 Score=26.98 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=23.6
Q ss_pred EEEeC-CeEEEEEeCCeEEEEEcCCCeEEEEEeCC
Q 043460 200 VYSRG-GILYNLTYRSTILRYNIEALSEAEIIEVP 233 (368)
Q Consensus 200 v~~~~-G~lywl~~~~~il~fD~~~~~~~~~~~lP 233 (368)
++. + |.+|.-...+.+.++|..+++-.....++
T Consensus 106 ~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 106 AYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred EEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 445 6 89998777899999999876554234443
No 114
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=43.76 E-value=2.9e+02 Score=26.19 Aligned_cols=184 Identities=14% Similarity=0.041 Sum_probs=90.4
Q ss_pred CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceee
Q 043460 115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSF 194 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~ 194 (368)
...++++|..|++...+..... ......+.|. +. +++..........+.+++.+++..+...... .
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~~----~~~~~~~spD--g~-~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~----- 278 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFPG----MNGAPAFSPD--GS-KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP--G----- 278 (417)
T ss_pred CcEEEEEECCCCCEEEeecCCC----CccceEECCC--CC-EEEEEECCCCCccEEEEECCCCCEEECCCCC--C-----
Confidence 3578999999987776644321 1123445552 22 2332222223456777788777655543211 0
Q ss_pred eccc-eEEEeCC-eEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEE-EECCCeEEEEEEc
Q 043460 195 YVLQ-SVYSRGG-ILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYA-SRNQSTLLIWQLD 268 (368)
Q Consensus 195 ~~~~-~v~~~~G-~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~-~~~~~~~~IW~l~ 268 (368)
.... ...- +| .|++... ...|..+|+.+.+.. .+........ . .....+|+..++ ..+....+|+.++
T Consensus 279 ~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~---~-~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 279 IDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA---S-PSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred CCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc---C-eEECCCCCEEEEEEccCCceEEEEEe
Confidence 0011 1112 44 3555543 236888898888776 4432211111 1 122335654444 4444566777776
Q ss_pred cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEEEec
Q 043460 269 DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~~v~ 344 (368)
-.++ .+..+.. .... .. ..+.+++..|++. ....++.++.+.+..+.+.
T Consensus 353 ~~~~---------------~~~~l~~---~~~~--------~~-p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~ 405 (417)
T TIGR02800 353 LDGG---------------GERVLTD---TGLD--------ES-PSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLP 405 (417)
T ss_pred CCCC---------------CeEEccC---CCCC--------CC-ceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECC
Confidence 5433 3433221 1000 01 2456667666554 2235777777766666654
Q ss_pred c
Q 043460 345 T 345 (368)
Q Consensus 345 ~ 345 (368)
.
T Consensus 406 ~ 406 (417)
T TIGR02800 406 L 406 (417)
T ss_pred C
Confidence 3
No 115
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=43.69 E-value=1.5e+02 Score=31.69 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=37.5
Q ss_pred eeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee
Q 043460 247 LCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC 296 (368)
Q Consensus 247 ~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~ 296 (368)
.-+|+....+.++..+.||...+. ....-+||+|+.-++..|.-+..+.
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~ 126 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILR 126 (942)
T ss_pred CCCCCeEeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEe
Confidence 347777777778889999999972 2223358888888999999998876
No 116
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=43.62 E-value=32 Score=23.35 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=14.0
Q ss_pred CeEEEEECCCCeEEEe
Q 043460 328 DMIYRYHLKTNKMELF 343 (368)
Q Consensus 328 ~~~~~ydl~t~~~~~v 343 (368)
-++|.||.+|++++.+
T Consensus 41 iKIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCeEEEE
Confidence 4899999999998865
No 117
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=40.09 E-value=54 Score=32.21 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=63.5
Q ss_pred EcccCccceecCCCCcC--------CCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCC
Q 043460 121 CNPLTKQCVAIPKARED--------VLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPR 189 (368)
Q Consensus 121 ~NP~T~~~~~lP~~~~~--------~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~ 189 (368)
=-|.+-+|..+|+...+ .....+.+++++. +-.|...+.-. ....+..|+-+.+.|........
T Consensus 234 q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~---~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~-- 308 (723)
T KOG2437|consen 234 QQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQ---TECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTE-- 308 (723)
T ss_pred cccccccccccCchhhcccccccCccccCcceEEEeCC---CcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCC--
Confidence 35778888888876521 1234455677662 22344443322 34457789999999988764321
Q ss_pred CceeeeccceEEE-eCCeEEEEEe------------CCeEEEEEcCCCeEEEEEeCCCCC
Q 043460 190 RPVSFYVLQSVYS-RGGILYNLTY------------RSTILRYNIEALSEAEIIEVPDKN 236 (368)
Q Consensus 190 ~p~~~~~~~~v~~-~~G~lywl~~------------~~~il~fD~~~~~~~~~~~lP~~~ 236 (368)
.|-.-..++.|.- ..-+||.++. ...+-.||.++..|. .+..-...
T Consensus 309 ~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~-~ls~dt~~ 367 (723)
T KOG2437|consen 309 GPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWM-LLSEDTAA 367 (723)
T ss_pred CCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeE-Eecccccc
Confidence 0111111122221 0235666554 578999999999999 88776553
No 118
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=39.15 E-value=4.9e+02 Score=27.48 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=35.4
Q ss_pred EEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE--eeCCeEEEEEECCCeEEEEEEccC
Q 043460 208 YNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG--LCKGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 208 ywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~--~~~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
-++.....+++||++=+.--.++++|...... ..+. -.+..|+.++.+ .++.||+.+++
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~~akf---v~vlP~~~rd~LfclH~n-G~ltirvrk~~ 306 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERGGAKF---VDVLPDPRRDALFCLHSN-GRLTIRVRKEE 306 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccCCcce---eEeccCCCcceEEEEecC-CeEEEEEeecc
Confidence 34444889999999998776588888763221 1111 112334444433 47788887775
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=38.76 E-value=4.1e+02 Score=26.42 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=40.4
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccC
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
||.---+++ ...+-..|+.+.+-+-...++...... .......|-+||+.+..+.++.||-|...
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaC--yALa~spDakvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC--YALAISPDAKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhh--hhhhcCCccceeeeeccCCcEEEEEcccc
Confidence 555444443 345666788877666223455432111 22334558899999999999999987653
No 120
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=38.40 E-value=27 Score=31.28 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHcCCC-chhhHHHhhhhHHHHhhhcCC
Q 043460 5 YLSEDLITEILSRLP-VKSVVGFKIVSKTWNNLISKV 40 (368)
Q Consensus 5 ~LP~Dll~~IL~rLp-~~~l~r~r~Vck~Wr~li~~~ 40 (368)
+||.+++.+||.||| -++|...+.|-..-..++++.
T Consensus 204 dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~ 240 (332)
T KOG3926|consen 204 DLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEER 240 (332)
T ss_pred cchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHH
Confidence 799999999999999 999999888866666666644
No 121
>PLN00181 protein SPA1-RELATED; Provisional
Probab=37.79 E-value=5.2e+02 Score=27.36 Aligned_cols=110 Identities=13% Similarity=0.198 Sum_probs=58.2
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccC
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKA 282 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~ 282 (368)
+|.....+. ++.|..+|+.+..-. ...+...... ...+...++...+....+..+.||-+.....
T Consensus 629 ~g~~latgs~dg~I~iwD~~~~~~~-~~~~~~h~~~---V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~---------- 694 (793)
T PLN00181 629 SGRSLAFGSADHKVYYYDLRNPKLP-LCTMIGHSKT---VSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS---------- 694 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCCcc-ceEecCCCCC---EEEEEEeCCCEEEEEECCCEEEEEeCCCCcc----------
Confidence 344444444 678999999865421 1122111111 1233344677666666778999999875411
Q ss_pred CCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCC
Q 043460 283 ASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTN 338 (368)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~ 338 (368)
...|..+.++.-.. .....+++.+.+..|... .+..+..|+..+.
T Consensus 695 ---~~~~~~l~~~~gh~--------~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 695 ---GINETPLHSFMGHT--------NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred ---ccCCcceEEEcCCC--------CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 01455555543111 122335566666655444 4567777776654
No 122
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=37.42 E-value=3.6e+02 Score=25.50 Aligned_cols=187 Identities=11% Similarity=0.019 Sum_probs=91.6
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....+++++...+..+.|-.... ......+.| .+.+-++.. .......+.+++..++.-+..... . .
T Consensus 168 ~~~~l~~~d~~g~~~~~l~~~~~----~~~~p~~Sp--dg~~la~~~-~~~~~~~i~v~d~~~g~~~~~~~~-~-~---- 234 (417)
T TIGR02800 168 RRYELQVADYDGANPQTITRSRE----PILSPAWSP--DGQKLAYVS-FESGKPEIYVQDLATGQREKVASF-P-G---- 234 (417)
T ss_pred CcceEEEEcCCCCCCEEeecCCC----ceecccCCC--CCCEEEEEE-cCCCCcEEEEEECCCCCEEEeecC-C-C----
Confidence 35568888886665555533221 011112333 234433322 222345788888888765544321 1 0
Q ss_pred eeccceEEEeCC-eEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCe-EEEEEECCCeEEEEEEc
Q 043460 194 FYVLQSVYSRGG-ILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGA-LNYASRNQSTLLIWQLD 268 (368)
Q Consensus 194 ~~~~~~v~~~~G-~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~-L~~~~~~~~~~~IW~l~ 268 (368)
........- +| .+++... ...|..+|+.+.... .+........ ... -..+|+ |++.........||.++
T Consensus 235 ~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~---~~~-~s~dg~~l~~~s~~~g~~~iy~~d 308 (417)
T TIGR02800 235 MNGAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDT---EPS-WSPDGKSIAFTSDRGGSPQIYMMD 308 (417)
T ss_pred CccceEECC-CCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCC---CEE-ECCCCCEEEEEECCCCCceEEEEE
Confidence 000111222 44 3554433 346888999988766 3321111110 111 123564 44444334455788777
Q ss_pred cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee----CCeEEEEECCCCeEEEec
Q 043460 269 DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS----CDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~ydl~t~~~~~v~ 344 (368)
..+. .+..+. ... . ...-..+.++++.|++.. ...++.+|+++++++.+.
T Consensus 309 ~~~~---------------~~~~l~---~~~---~-----~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 309 ADGG---------------EVRRLT---FRG---G-----YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred CCCC---------------CEEEee---cCC---C-----CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence 6444 444322 110 0 011134566777776662 237999999998887776
Q ss_pred c
Q 043460 345 T 345 (368)
Q Consensus 345 ~ 345 (368)
.
T Consensus 363 ~ 363 (417)
T TIGR02800 363 D 363 (417)
T ss_pred C
Confidence 4
No 123
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.28 E-value=3.4e+02 Score=25.07 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=57.2
Q ss_pred EEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC-CCcEEEEEeCCCCCce--eccccC-CCCCcee
Q 043460 118 YYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR-MDPEVDIFSSENKTWI--TRKVSV-KPRRPVS 193 (368)
Q Consensus 118 ~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~-~~~~~~vyss~~~~W~--~~~~~~-~~~~p~~ 193 (368)
++=.+..||+.++|-..|.-. +.-+ .++..+.+.... +...+++|+..+++|. ..+... ..+.+..
T Consensus 133 vy~ldr~~g~~~~L~~~ps~K-----G~~~-----~D~a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~ 202 (339)
T PF09910_consen 133 VYSLDRRTGKAEKLSSNPSLK-----GTLV-----HDYACFGINNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVI 202 (339)
T ss_pred eEEEcccCCceeeccCCCCcC-----ceEe-----eeeEEEeccccccCCceEEEEEccCCeEEEEecccccCCCCCceE
Confidence 455567788887775544211 0000 123333221111 5778999999999993 322111 1111222
Q ss_pred ee-ccceEEEeCCeEEEEEeCCeEEEEEcC-CCeEE--EEEeCC
Q 043460 194 FY-VLQSVYSRGGILYNLTYRSTILRYNIE-ALSEA--EIIEVP 233 (368)
Q Consensus 194 ~~-~~~~v~~~~G~lywl~~~~~il~fD~~-~~~~~--~~~~lP 233 (368)
.. .+..+.+ .+.+|-.. .+.|++.|+- .+.++ .+++.|
T Consensus 203 ~~~~G~~~s~-ynR~faF~-rGGi~vgnP~~~e~~~f~RlfDf~ 244 (339)
T PF09910_consen 203 RPELGAMASA-YNRLFAFV-RGGIFVGNPYNGEEFRFYRLFDFP 244 (339)
T ss_pred eeccccEEEE-eeeEEEEE-eccEEEeCCCCCCceeEEEeeecc
Confidence 22 2346777 77777776 7899999998 55554 244555
No 124
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=35.95 E-value=3.2e+02 Score=24.44 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=36.6
Q ss_pred CCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCeEEEEEECCCeEEEEEEccC
Q 043460 204 GGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 204 ~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
.|.+...++++.+...|+++++++...+--. +.. ...++ +.+|. .+.+.++.+++||-++..
T Consensus 126 enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt---DYv-H~vv~R~~~~q-ilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 126 ENSILFAGGDGVIYQVDLEDGRIQREYRGHT---DYV-HSVVGRNANGQ-ILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred CCcEEEecCCeEEEEEEecCCEEEEEEcCCc---cee-eeeeecccCcc-eeecCCCccEEEEecccc
Confidence 3566666668899999999999983333221 110 11222 22333 233446678899987764
No 125
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=35.13 E-value=3.9e+02 Score=25.14 Aligned_cols=209 Identities=12% Similarity=0.123 Sum_probs=104.7
Q ss_pred cEEEecCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCC
Q 043460 97 YALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSE 175 (368)
Q Consensus 97 ~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~ 175 (368)
...+...+.++++.+......+-|.|-..++... +|-+. +.+.|-. ..+.|--+| +.-.+..+.+.
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-------C~~iyP~-~~~~F~~lC-----~DGsl~~v~Ld 165 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-------CWLIYPS-GNRGFSMLC-----GDGSLLTVTLD 165 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-------EEEEEEE-ETTEEEEEE-----TTSCEEEEEET
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-------EEEEEec-CCCceEEEe-----cCCceEEEEEC
Confidence 4456666777777765566677888888777665 33222 2233321 123343332 11223333333
Q ss_pred C-CCce-ecccc-CCCCCceeeeccceEEEe-CCeEEEEEeCCeEEEEEcCCCeEEEEEe---CCCCCC--CC--CCce-
Q 043460 176 N-KTWI-TRKVS-VKPRRPVSFYVLQSVYSR-GGILYNLTYRSTILRYNIEALSEAEIIE---VPDKNN--HP--CDSE- 243 (368)
Q Consensus 176 ~-~~W~-~~~~~-~~~~~p~~~~~~~~v~~~-~G~lywl~~~~~il~fD~~~~~~~~~~~---lP~~~~--~~--~~~~- 243 (368)
+ |+=. ..... .+.. ......+++.+ +|.+||++..+.|...|++.+.-. ..+ +-.... .. ....
T Consensus 166 ~~Gk~~~~~t~~F~~~~---dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~-~~~~~~~~t~~e~~~~WrPGG~Q 241 (342)
T PF06433_consen 166 ADGKEAQKSTKVFDPDD---DPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK-FGKPWSLLTDAEKADGWRPGGWQ 241 (342)
T ss_dssp STSSEEEEEEEESSTTT---S-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE-EEEEEESS-HHHHHTTEEE-SSS
T ss_pred CCCCEeEeeccccCCCC---cccccccceECCCCeEEEEecCCEEEEEeccCCccc-ccCcccccCccccccCcCCccee
Confidence 1 2111 11111 1111 11223345542 468999999999999999998755 332 111000 00 0011
Q ss_pred eEEe--eCCeEEEEEE-------CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEE
Q 043460 244 VIGL--CKGALNYASR-------NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYN 314 (368)
Q Consensus 244 ~l~~--~~G~L~~~~~-------~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~ 314 (368)
.++. ..|+|++... .+..-+||+++-..+ .++.+++++.-. .-++
T Consensus 242 ~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-----------------krv~Ri~l~~~~---------~Si~ 295 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-----------------KRVARIPLEHPI---------DSIA 295 (342)
T ss_dssp -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT-----------------EEEEEEEEEEEE---------SEEE
T ss_pred eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC-----------------eEEEEEeCCCcc---------ceEE
Confidence 2333 3578988765 123579999998643 466667654211 1245
Q ss_pred EecCCC-EEEEe--eCCeEEEEECCCCeEE-Eecc-CCC
Q 043460 315 IHPNSD-IIFLG--SCDMIYRYHLKTNKME-LFST-RSP 348 (368)
Q Consensus 315 ~~~~~~-~v~~~--~~~~~~~ydl~t~~~~-~v~~-~~~ 348 (368)
+..+.. .+|.. ....++.||..|.|.. .+.. |..
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~ 334 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGET 334 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCC
Confidence 555444 56544 3567999999999864 4554 553
No 126
>PRK02889 tolB translocation protein TolB; Provisional
Probab=34.30 E-value=4.3e+02 Score=25.45 Aligned_cols=184 Identities=15% Similarity=0.113 Sum_probs=87.2
Q ss_pred CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceee
Q 043460 115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSF 194 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~ 194 (368)
...++++|..+++...+...+. ......+.|. .=+++......+...+.+++..++..+..... . .
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g----~~~~~~~SPD---G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~-----~- 284 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKG----SNSAPAWSPD---GRTLAVALSRDGNSQIYTVNADGSGLRRLTQS-S-----G- 284 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCC----CccceEECCC---CCEEEEEEccCCCceEEEEECCCCCcEECCCC-C-----C-
Confidence 3569999999998777754331 1123445551 22333332222344555666666665443211 0 0
Q ss_pred eccceEEEeCCe-EEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCe-EEEEEECCCeEEEEEEcc
Q 043460 195 YVLQSVYSRGGI-LYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGA-LNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 195 ~~~~~v~~~~G~-lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~-L~~~~~~~~~~~IW~l~~ 269 (368)
....+....+|. +++... ...|..+|..+++.+ .+........ .... ..+|+ |++........+|++++-
T Consensus 285 ~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~---~~~~-SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 285 IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNT---SPRI-SPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcC---ceEE-CCCCCEEEEEEccCCcEEEEEEEC
Confidence 011111111443 554443 346777888777766 4433211111 1222 23564 454444444445555554
Q ss_pred CCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEEEec
Q 043460 270 HRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~~v~ 344 (368)
..+ ....+. ..... .-..+.+++..|++. ....++.+++..+..+++.
T Consensus 360 ~~g---------------~~~~lt---~~~~~---------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 360 ATG---------------QVTALT---DTTRD---------ESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred CCC---------------CeEEcc---CCCCc---------cCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 323 222211 11111 112467777766665 2345888888766555564
No 127
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=32.91 E-value=3.9e+02 Score=24.47 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=46.3
Q ss_pred eeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEE
Q 043460 243 EVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDII 322 (368)
Q Consensus 243 ~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 322 (368)
..+...+|+|.+.. +..+.++.++..+ .+.++...+.+... ..+...++.|
T Consensus 92 ~ai~~~~~~lv~~~--g~~l~v~~l~~~~----------------~l~~~~~~~~~~~i-----------~sl~~~~~~I 142 (321)
T PF03178_consen 92 TAICSFNGRLVVAV--GNKLYVYDLDNSK----------------TLLKKAFYDSPFYI-----------TSLSVFKNYI 142 (321)
T ss_dssp EEEEEETTEEEEEE--TTEEEEEEEETTS----------------SEEEEEEE-BSSSE-----------EEEEEETTEE
T ss_pred eEhhhhCCEEEEee--cCEEEEEEccCcc----------------cchhhheecceEEE-----------EEEeccccEE
Confidence 36667788843333 4789999999842 38888777644322 2233335666
Q ss_pred EEe---eCCeEEEEECCCCeEEEecc
Q 043460 323 FLG---SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 323 ~~~---~~~~~~~ydl~t~~~~~v~~ 345 (368)
++. .+-.++.|+.+.+++..++.
T Consensus 143 ~vgD~~~sv~~~~~~~~~~~l~~va~ 168 (321)
T PF03178_consen 143 LVGDAMKSVSLLRYDEENNKLILVAR 168 (321)
T ss_dssp EEEESSSSEEEEEEETTTE-EEEEEE
T ss_pred EEEEcccCEEEEEEEccCCEEEEEEe
Confidence 666 34457777888888888887
No 128
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=32.15 E-value=2.5e+02 Score=25.89 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred EeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccC--CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccc
Q 043460 230 IEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDH--RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVF 307 (368)
Q Consensus 230 ~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~--~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~ 307 (368)
+.+|....+........-....|..+..-+.+++||.++.. -. . .-..+++-+.+.
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~---------------~-ka~~~~~~PvL~------ 77 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV---------------P-KAQQSHDGPVLD------ 77 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCccc---------------c-hhhhccCCCeEE------
Q ss_pred cceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEEec
Q 043460 308 GLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 308 ~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~v~ 344 (368)
++...+|..||.. .+..+-.+||.+++...|+
T Consensus 78 -----v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~ 110 (347)
T KOG0647|consen 78 -----VCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVA 110 (347)
T ss_pred -----EEEccCCceEEeeccCCceEEEEccCCCeeeee
No 129
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=32.10 E-value=76 Score=24.52 Aligned_cols=25 Identities=12% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEeeCCeEEEEECCCCeEEEecc
Q 043460 321 IIFLGSCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 321 ~v~~~~~~~~~~ydl~t~~~~~v~~ 345 (368)
+|++...+.+|.||.+++++..++.
T Consensus 84 vvl~~~~G~Vy~yd~~~~~l~~lA~ 108 (125)
T PF02393_consen 84 VVLVGESGRVYAYDPEDDRLYRLAD 108 (125)
T ss_pred EEEEeCCCeEEEEEcCCCEEEEEeC
Confidence 3444478899999999999999986
No 130
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=31.98 E-value=3.7e+02 Score=23.96 Aligned_cols=110 Identities=18% Similarity=0.191 Sum_probs=57.3
Q ss_pred CCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC----
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT---- 178 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~---- 178 (368)
.+|=.|+... ..+.+-+|||..+...+-=.... .......+.+|.+ |+. ...+...+.+++..||.
T Consensus 27 ~dGnY~ltcG-sdrtvrLWNp~rg~liktYsghG-~EVlD~~~s~Dns-----kf~---s~GgDk~v~vwDV~TGkv~Rr 96 (307)
T KOG0316|consen 27 VDGNYCLTCG-SDRTVRLWNPLRGALIKTYSGHG-HEVLDAALSSDNS-----KFA---SCGGDKAVQVWDVNTGKVDRR 96 (307)
T ss_pred cCCCEEEEcC-CCceEEeecccccceeeeecCCC-ceeeecccccccc-----ccc---cCCCCceEEEEEcccCeeeee
Confidence 4565665543 66788899999887653211100 0011222233321 111 11146788999999885
Q ss_pred ceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeC
Q 043460 179 WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEV 232 (368)
Q Consensus 179 W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~l 232 (368)
|+-....+. ...+....+|.+ .|.+ +..+-.+|.....+. .++.
T Consensus 97 ~rgH~aqVN---tV~fNeesSVv~-Sgsf-----D~s~r~wDCRS~s~e-PiQi 140 (307)
T KOG0316|consen 97 FRGHLAQVN---TVRFNEESSVVA-SGSF-----DSSVRLWDCRSRSFE-PIQI 140 (307)
T ss_pred cccccceee---EEEecCcceEEE-eccc-----cceeEEEEcccCCCC-ccch
Confidence 444332111 122222334555 3322 678888999988888 5544
No 131
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=31.52 E-value=2.1e+02 Score=26.60 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=38.8
Q ss_pred ceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEE
Q 043460 198 QSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASR 257 (368)
Q Consensus 198 ~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~ 257 (368)
.+-.. +|.||.+.. .+.+..+|++++++..+..+|....+ |+-. |.+.++..
T Consensus 207 SPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rG------L~f~-G~llvVgm 259 (335)
T TIGR03032 207 SPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRG------LAFA-GDFAFVGL 259 (335)
T ss_pred CCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcc------ccee-CCEEEEEe
Confidence 34555 899999876 78999999999999867788865432 3333 88887776
No 132
>PRK04792 tolB translocation protein TolB; Provisional
Probab=31.06 E-value=5.1e+02 Score=25.25 Aligned_cols=142 Identities=12% Similarity=0.020 Sum_probs=74.1
Q ss_pred CCcEEEEEeCCCCCceeccccCCCCCceeeeccc-eEEEeCCe-EEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCC
Q 043460 165 MDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQ-SVYSRGGI-LYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHP 239 (368)
Q Consensus 165 ~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~-~v~~~~G~-lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~ 239 (368)
....+.+++..++.-+..... + . .... ...- +|. |++... ...|..+|+.+++.+ .+ .......
T Consensus 240 g~~~L~~~dl~tg~~~~lt~~-~-g-----~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~dl~tg~~~-~l--t~~~~~~ 308 (448)
T PRK04792 240 RKAEIFVQDIYTQVREKVTSF-P-G-----INGAPRFSP-DGKKLALVLSKDGQPEIYVVDIATKALT-RI--TRHRAID 308 (448)
T ss_pred CCcEEEEEECCCCCeEEecCC-C-C-----CcCCeeECC-CCCEEEEEEeCCCCeEEEEEECCCCCeE-EC--ccCCCCc
Confidence 455677788887765444321 1 0 0011 1122 443 444433 346889999988776 33 2211110
Q ss_pred CCceeEEeeCCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecC
Q 043460 240 CDSEVIGLCKGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPN 318 (368)
Q Consensus 240 ~~~~~l~~~~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
.... -..+|+ |++........+||.++-.++ ++.++. .... .. .. ..+.++
T Consensus 309 -~~p~-wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---------------~~~~Lt-~~g~-~~--------~~-~~~SpD 360 (448)
T PRK04792 309 -TEPS-WHPDGKSLIFTSERGGKPQIYRVNLASG---------------KVSRLT-FEGE-QN--------LG-GSITPD 360 (448)
T ss_pred -cceE-ECCCCCEEEEEECCCCCceEEEEECCCC---------------CEEEEe-cCCC-CC--------cC-eeECCC
Confidence 0111 123554 555544445678998887544 555442 1100 00 11 245667
Q ss_pred CCEEEEe----eCCeEEEEECCCCeEEEecc
Q 043460 319 SDIIFLG----SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 319 ~~~v~~~----~~~~~~~ydl~t~~~~~v~~ 345 (368)
|+.|++. ....++.+|+++++.+.+..
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAMQVLTS 391 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCeEEccC
Confidence 7777665 23478899999998877654
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=30.86 E-value=3.3e+02 Score=27.01 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=60.9
Q ss_pred CCeEEEEEcCCCeEE-EEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEE
Q 043460 213 RSTILRYNIEALSEA-EIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWIL 291 (368)
Q Consensus 213 ~~~il~fD~~~~~~~-~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~ 291 (368)
.++|-+.|+..-.=+ ++-+|+....+.......-..+|+-.+++....++.||-|..... =.
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp----------------ri- 501 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP----------------RI- 501 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc----------------ch-
Confidence 678888888764221 244555543222112233355888888888899999999987532 01
Q ss_pred EEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEE
Q 043460 292 KHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKME 341 (368)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~ 341 (368)
...+. ... --+.-+++.++..+.|-. .++.|.++|+..+.+-
T Consensus 502 kaelt-----ssa---paCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 502 KAELT-----SSA---PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred hhhcC-----Ccc---hhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 11111 100 012235566666666665 6778888888877753
No 134
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=30.48 E-value=5.2e+02 Score=25.22 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
+-+|..++... ...++-||+. .+-...-..-..+......+.|.| .. +.++-+.. ...+.|++.++++=..
T Consensus 212 s~d~~~l~s~s-~D~tiriwd~--~~~~~~~~~l~gH~~~v~~~~f~p---~g-~~i~Sgs~--D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 212 SPDGSYLLSGS-DDKTLRIWDL--KDDGRNLKTLKGHSTYVTSVAFSP---DG-NLLVSGSD--DGTVRIWDVRTGECVR 282 (456)
T ss_pred CCCCcEEEEec-CCceEEEeec--cCCCeEEEEecCCCCceEEEEecC---CC-CEEEEecC--CCcEEEEeccCCeEEE
Q ss_pred ccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCC-CCceeEEeeCCeEEEEEECC
Q 043460 182 RKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHP-CDSEVIGLCKGALNYASRNQ 259 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~-~~~~~l~~~~G~L~~~~~~~ 259 (368)
.-...... ...-...- +|.+.+... ++.|..+|+.++..+ ....-...... .........+|+..++...+
T Consensus 283 ~l~~hs~~-----is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 283 KLKGHSDG-----ISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred eeeccCCc-----eEEEEECC-CCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEecCC
Q ss_pred CeEEEEEEccC
Q 043460 260 STLLIWQLDDH 270 (368)
Q Consensus 260 ~~~~IW~l~~~ 270 (368)
..+.+|.+...
T Consensus 356 ~~~~~w~l~~~ 366 (456)
T KOG0266|consen 356 RTLKLWDLRSG 366 (456)
T ss_pred CeEEEEEccCC
No 135
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=30.10 E-value=7.9e+02 Score=27.20 Aligned_cols=216 Identities=10% Similarity=0.077 Sum_probs=100.7
Q ss_pred EecCCcEEEEeecCCCeeEEEEcccCccceecCCCCc-------------CCCCCCCeeEEcCCCCCCeEEEEEEEeCCC
Q 043460 100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKARE-------------DVLASPPALAFHPCDSSHYKIIRFLRARMD 166 (368)
Q Consensus 100 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~-------------~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~ 166 (368)
++..++.|.+.+. ..+.+.++|+.++....+..... .......++.+|+. +..-.+... ..
T Consensus 631 vd~~gn~LYVaDt-~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~--~g~LyVad~---~~ 704 (1057)
T PLN02919 631 YNAKKNLLYVADT-ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV--NEKVYIAMA---GQ 704 (1057)
T ss_pred EeCCCCEEEEEeC-CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC--CCeEEEEEC---CC
Confidence 3334455555443 33456677777776665533210 01223346677762 222222211 23
Q ss_pred cEEEEEeCCCCCceecccc-----CCCCCc--eeeeccceEEEe-CCe-EEEEEe-CCeEEEEEcCCCeEEEEEe-----
Q 043460 167 PEVDIFSSENKTWITRKVS-----VKPRRP--VSFYVLQSVYSR-GGI-LYNLTY-RSTILRYNIEALSEAEIIE----- 231 (368)
Q Consensus 167 ~~~~vyss~~~~W~~~~~~-----~~~~~p--~~~~~~~~v~~~-~G~-lywl~~-~~~il~fD~~~~~~~~~~~----- 231 (368)
..+.+|+..++........ .....+ ..+..-.++.+. +|. ||.... ...|.+||+.+.... .+.
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecccc
Confidence 4566666666544322110 000000 011111233331 454 777665 679999999876544 221
Q ss_pred CCCCC------CC------CCCceeE-EeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeec
Q 043460 232 VPDKN------NH------PCDSEVI-GLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMD 298 (368)
Q Consensus 232 lP~~~------~~------~~~~~~l-~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~ 298 (368)
.|... .. ......+ ...+|.|+++.....++.+|-.+.. ....+......
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg-----------------~v~tiaG~G~~ 846 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK-----------------RVTTLAGTGKA 846 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC-----------------eEEEEeccCCc
Confidence 11100 00 0011222 3457888888887788888876542 11111111000
Q ss_pred ccccc---CccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeE
Q 043460 299 EWGNK---LHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKM 340 (368)
Q Consensus 299 ~~~~~---~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~ 340 (368)
.+.+. ...+....-+++.++|. +|+. ....+..+|+++++.
T Consensus 847 G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 847 GFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCCcc
Confidence 00000 00001223345666776 5555 567899999999875
No 136
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=30.09 E-value=41 Score=21.89 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=13.2
Q ss_pred CCCEEEEeeC------CeEEEEEC
Q 043460 318 NSDIIFLGSC------DMIYRYHL 335 (368)
Q Consensus 318 ~~~~v~~~~~------~~~~~ydl 335 (368)
+++.||+... ..+.+||+
T Consensus 31 ~~n~IYf~~~~~~~~~~~~~Vy~m 54 (54)
T PF03478_consen 31 KGNCIYFLDDSSDESDRDIGVYNM 54 (54)
T ss_pred cCCEEEEecCCCCCCCCCEEEEeC
Confidence 5788888855 66777775
No 137
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=29.41 E-value=5.2e+02 Score=24.84 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=39.2
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEE---CCCeEEEEEEccCC
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASR---NQSTLLIWQLDDHR 271 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~---~~~~~~IW~l~~~~ 271 (368)
||.+...++ +..|-++|+.+++.. .-......... ...+...+|.+.-.+. .+..+.+|--+...
T Consensus 184 dGs~l~TtckDKkvRv~dpr~~~~v-~e~~~heG~k~--~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 184 DGSLLCTTCKDKKVRVIDPRRGTVV-SEGVAHEGAKP--ARAIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred CCceeeeecccceeEEEcCCCCcEe-eecccccCCCc--ceeEEeccCceeeeccccccccceeccCccccc
Confidence 777766666 788999999999886 32233222221 2344445666444444 45678888766543
No 138
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=29.39 E-value=2.5e+02 Score=27.80 Aligned_cols=57 Identities=7% Similarity=0.008 Sum_probs=41.3
Q ss_pred eEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC
Q 043460 199 SVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ 259 (368)
Q Consensus 199 ~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~ 259 (368)
.+.. +|.||.-..++.+.+||..+++-....++|..... .+.+...+|++|+...+.
T Consensus 402 ~~~~-g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a---~P~~~~~~g~~yv~~~~g 458 (488)
T cd00216 402 LATA-GNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQA---TPMTYEVNGKQYVGVMVG 458 (488)
T ss_pred eEec-CCeEEEECCCCeEEEEECCCCceeeEEECCCCceE---cCEEEEeCCEEEEEEEec
Confidence 3556 78888877789999999999866545677655433 345557799999988754
No 139
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=28.68 E-value=1.3e+02 Score=27.41 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=45.1
Q ss_pred CCcEEEEEeCCCCCceeccccCCCC-CceeeeccceEEEeCCeEEEEE-eCCeEEEEEcCCCeEE
Q 043460 165 MDPEVDIFSSENKTWITRKVSVKPR-RPVSFYVLQSVYSRGGILYNLT-YRSTILRYNIEALSEA 227 (368)
Q Consensus 165 ~~~~~~vyss~~~~W~~~~~~~~~~-~p~~~~~~~~v~~~~G~lywl~-~~~~il~fD~~~~~~~ 227 (368)
.+..+.+|+..+.+|.......... ..+.|....-+++ .|.+-.-. ....+..||..+.+|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv-~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLV-GGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEE-EEeeEECCCCceeEEEEecCCCeee
Confidence 4778999999999999887543211 0122333456888 88777666 3778999999999998
No 140
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=28.46 E-value=2.2e+02 Score=25.30 Aligned_cols=85 Identities=12% Similarity=0.185 Sum_probs=48.5
Q ss_pred eEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC-CCcEEEEEeCCC----CCceeccccCCCCCc
Q 043460 117 RYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR-MDPEVDIFSSEN----KTWITRKVSVKPRRP 191 (368)
Q Consensus 117 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~-~~~~~~vyss~~----~~W~~~~~~~~~~~p 191 (368)
.-.+|||.|++++.++.... .++....+- + +-+++..+... +...+.+|+..+ ..|.+....+..
T Consensus 47 ~s~~yD~~tn~~rpl~v~td-~FCSgg~~L--~----dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~--- 116 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTD-TFCSGGAFL--P----DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS--- 116 (243)
T ss_pred EEEEEecCCCcEEeccCCCC-CcccCcCCC--C----CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC---
Confidence 46799999999999875432 222222211 1 22344333322 455677777654 678876543221
Q ss_pred eeeeccceEEEeCCeEEEEEe
Q 043460 192 VSFYVLQSVYSRGGILYNLTY 212 (368)
Q Consensus 192 ~~~~~~~~v~~~~G~lywl~~ 212 (368)
-.|..+....- ||.+..+++
T Consensus 117 ~RWYpT~~~L~-DG~vlIvGG 136 (243)
T PF07250_consen 117 GRWYPTATTLP-DGRVLIVGG 136 (243)
T ss_pred CCccccceECC-CCCEEEEeC
Confidence 13455555666 888888876
No 141
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=28.01 E-value=1.7e+02 Score=28.97 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=41.9
Q ss_pred EEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCeEEEEEECCCeEEEEEEccCCC
Q 043460 201 YSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGALNYASRNQSTLLIWQLDDHRH 272 (368)
Q Consensus 201 ~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~IW~l~~~~~ 272 (368)
+-++|.+..-+. ++.|-..|......++.+.+-.......+...+. ..+|+..+-...+..|.+|-|...++
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred cCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 333555533322 6778888876655553444332222211233444 44788777777888999999988643
No 142
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=27.23 E-value=6e+02 Score=24.83 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=28.2
Q ss_pred CcEEEecCCcEEEEeecCCCeeEEEEcccCccceec
Q 043460 96 PYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAI 131 (368)
Q Consensus 96 ~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~l 131 (368)
.+.+..|++|-.++... ....+.||++.|++++.-
T Consensus 205 il~~avS~Dgkylatgg-~d~~v~Iw~~~t~ehv~~ 239 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGG-RDRHVQIWDCDTLEHVKV 239 (479)
T ss_pred eEEEEEcCCCcEEEecC-CCceEEEecCcccchhhc
Confidence 35667789999888875 666778999999998875
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.14 E-value=5.1e+02 Score=24.03 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=42.6
Q ss_pred eEEEEEE-CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee-ec-cccccC-ccc-cceEEEEEecCCCEEEEe
Q 043460 251 ALNYASR-NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC-MD-EWGNKL-HVF-GLTRFYNIHPNSDIIFLG 325 (368)
Q Consensus 251 ~L~~~~~-~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~-~~-~~~~~~-~~~-~~~~~~~~~~~~~~v~~~ 325 (368)
.|.++.. .+..++|+..-+..+ ...|.+.+.|. +. ...... .++ ..+.+-.++ ...|-+.
T Consensus 126 GLklA~~~aDG~lRIYEA~dp~n-------------Ls~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~--~p~iAvg 190 (361)
T KOG2445|consen 126 GLKLAAASADGILRIYEAPDPMN-------------LSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH--EPLIAVG 190 (361)
T ss_pred ceEEEEeccCcEEEEEecCCccc-------------cccchhhhhhhhccCCcccccCcceEEeecccccc--CceEEEE
Confidence 3444444 567889998777622 11799999887 21 111111 000 011111111 1222222
Q ss_pred --------eCCeEEEEECCCCeEEEecc
Q 043460 326 --------SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 326 --------~~~~~~~ydl~t~~~~~v~~ 345 (368)
....||-||-..+||.+++.
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehh
Confidence 13468889999999999887
No 144
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=26.93 E-value=5e+02 Score=23.82 Aligned_cols=211 Identities=12% Similarity=0.151 Sum_probs=109.4
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCC--------------CCCCeeE-EcCCCCCCeEEEEEEEeC--
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVL--------------ASPPALA-FHPCDSSHYKIIRFLRAR-- 164 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~--------------~~~~~l~-~d~~~~~~ykvv~~~~~~-- 164 (368)
+-+|-|-+... ..+.+==.||.|++....|-...... -...+++ +|+ .+..++-+-+....
T Consensus 70 apdG~VWft~q-g~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dp-kt~evt~f~lp~~~a~ 147 (353)
T COG4257 70 APDGAVWFTAQ-GTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDP-KTLEVTRFPLPLEHAD 147 (353)
T ss_pred CCCCceEEecC-ccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecC-cccceEEeecccccCC
Confidence 45776666543 33334457999999999876542110 0000121 233 12223322222211
Q ss_pred CCcEEEEEeCCCCCceeccccCCCC-C-----------ceee-eccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEE
Q 043460 165 MDPEVDIFSSENKTWITRKVSVKPR-R-----------PVSF-YVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEII 230 (368)
Q Consensus 165 ~~~~~~vyss~~~~W~~~~~~~~~~-~-----------p~~~-~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~ 230 (368)
...+.-||+....-|=......-.+ . |.+. ..+-++-- ||.+|.-.. .++|..+|+.+..-. ++
T Consensus 148 ~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~ae-v~ 225 (353)
T COG4257 148 ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAE-VV 225 (353)
T ss_pred CcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcc-ee
Confidence 5667778888888884322110000 0 1110 11124556 788888754 789999999999888 88
Q ss_pred eCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee-eccccccCccccc
Q 043460 231 EVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC-MDEWGNKLHVFGL 309 (368)
Q Consensus 231 ~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~ 309 (368)
+.|....... ...-....|++....... -.+-..+-... +|..-. ++ ...-.
T Consensus 226 p~P~~~~~gs-Rriwsdpig~~wittwg~--g~l~rfdPs~~---------------sW~eyp-LPgs~arp-------- 278 (353)
T COG4257 226 PQPNALKAGS-RRIWSDPIGRAWITTWGT--GSLHRFDPSVT---------------SWIEYP-LPGSKARP-------- 278 (353)
T ss_pred cCCCcccccc-cccccCccCcEEEeccCC--ceeeEeCcccc---------------cceeee-CCCCCCCc--------
Confidence 8887633221 111123345544432221 12222232223 676522 32 11100
Q ss_pred eEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEEecc
Q 043460 310 TRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 310 ~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~v~~ 345 (368)
.. +.+. +.+.|.+. +...|.+||++|.+++.+..
T Consensus 279 ys-~rVD-~~grVW~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 279 YS-MRVD-RHGRVWLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ce-eeec-cCCcEEeeccccCceeecCcccceEEEecC
Confidence 11 2223 45667775 67789999999999998866
No 145
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=26.89 E-value=1.1e+02 Score=25.96 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=28.4
Q ss_pred CCCCCCcEEEecCCcEEEEeecCCCeeEEEEcccCccce
Q 043460 91 PSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCV 129 (368)
Q Consensus 91 p~~~~~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~ 129 (368)
|+...++.-+.-.+|.+|+.. .....+..+|+||+-.
T Consensus 27 p~S~sr~s~VS~~~~~~C~s~--~~~~~~~vDP~Tgra~ 63 (263)
T PF07861_consen 27 PHSTSRFSSVSFAGGRACLSD--TAGSVYTVDPLTGRAV 63 (263)
T ss_pred ccCCceeEEEecCCceEEEec--CCCceEEecccccccc
Confidence 444555666777899999987 6778899999997654
No 146
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=26.49 E-value=1.9e+02 Score=22.48 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=27.5
Q ss_pred CcEEEEEeCCCC-CceeccccCCCCCceeeeccceEEEeCCeEEEEEe----CCeEEEEEcCCCeE
Q 043460 166 DPEVDIFSSENK-TWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----RSTILRYNIEALSE 226 (368)
Q Consensus 166 ~~~~~vyss~~~-~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----~~~il~fD~~~~~~ 226 (368)
...+++|-...+ .|..+...-+.. ||.+.|+.. ...+..+-..|+.+
T Consensus 38 gVqV~~f~~~~~~~w~~igs~~T~~--------------nGrv~~~~~~~tl~~GtYr~~~dT~~Y 89 (132)
T KOG3006|consen 38 GVQVHLFILANDDTWTPIGSGFTQD--------------NGRVDWVSPDFTLIPGTYRLVFDTEPY 89 (132)
T ss_pred ceEEEEEEecCCCcccCcccccccc--------------CceeecccchhhhccceEEEEEecccc
Confidence 455666766544 899887543322 888888775 23344444444444
No 147
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=26.41 E-value=5.6e+02 Score=24.24 Aligned_cols=203 Identities=10% Similarity=0.060 Sum_probs=107.5
Q ss_pred EEecCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeC-CC
Q 043460 99 LIDCCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSS-EN 176 (368)
Q Consensus 99 ~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss-~~ 176 (368)
.+...+-+|++.+......+.|.|-.+++... +|-+. ....|-.+ ...|.+.+... ....+.+ .+
T Consensus 111 ~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-------~~~vy~t~-e~~~~~~~~Dg-----~~~~v~~d~~ 177 (352)
T TIGR02658 111 SLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-------CYHIFPTA-NDTFFMHCRDG-----SLAKVGYGTK 177 (352)
T ss_pred EECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-------CcEEEEec-CCccEEEeecC-----ceEEEEecCC
Confidence 34444445666654346788999999999877 55432 12333321 23444544332 1222222 22
Q ss_pred CCceeccc-cC--CCCCceeeeccce--EEEeCCeEEEEEeCCeEEEEEcCCCeEE--EEEeCCCCC----CCCCCc-ee
Q 043460 177 KTWITRKV-SV--KPRRPVSFYVLQS--VYSRGGILYNLTYRSTILRYNIEALSEA--EIIEVPDKN----NHPCDS-EV 244 (368)
Q Consensus 177 ~~W~~~~~-~~--~~~~p~~~~~~~~--v~~~~G~lywl~~~~~il~fD~~~~~~~--~~~~lP~~~----~~~~~~-~~ 244 (368)
|. ..... .. ....| ...++ .-. +|..+|....+.|..+|+++..-. ..+.+.... ...... ..
T Consensus 178 g~-~~~~~~~vf~~~~~~---v~~rP~~~~~-dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 178 GN-PKIKPTEVFHPEDEY---LINHPAYSNK-SGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred Cc-eEEeeeeeecCCccc---cccCCceEcC-CCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 33 11111 00 00000 11223 333 799999999999999997664322 011111100 000011 11
Q ss_pred EEee-C-CeEEEEEEC-------CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEE
Q 043460 245 IGLC-K-GALNYASRN-------QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNI 315 (368)
Q Consensus 245 l~~~-~-G~L~~~~~~-------~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~ 315 (368)
++.. + ++|++.... ...=+||+++- + .+..+..|.... ...-+++
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~--~---------------t~kvi~~i~vG~---------~~~~iav 306 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA--K---------------TGKRLRKIELGH---------EIDSINV 306 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEEC--C---------------CCeEEEEEeCCC---------ceeeEEE
Confidence 3333 3 556664431 11238899887 4 678888887543 2344678
Q ss_pred ecCCC-EEEEe--eCCeEEEEECCCCeE-EEecc
Q 043460 316 HPNSD-IIFLG--SCDMIYRYHLKTNKM-ELFST 345 (368)
Q Consensus 316 ~~~~~-~v~~~--~~~~~~~ydl~t~~~-~~v~~ 345 (368)
.+++. .+|.. ....+..+|..+.|. ..+..
T Consensus 307 S~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 307 SQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred CCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 88888 88876 456799999999974 55644
No 148
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=25.82 E-value=5.3e+02 Score=23.80 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=47.7
Q ss_pred ceEEEeCCeEEEEEe--------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEEEECC--CeEEEEE
Q 043460 198 QSVYSRGGILYNLTY--------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYASRNQ--STLLIWQ 266 (368)
Q Consensus 198 ~~v~~~~G~lywl~~--------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~--~~~~IW~ 266 (368)
.++.+.+|.+.+... ...++..|=..++|+ ....+... .......+.+. +|+|.+..... ....+..
T Consensus 150 ~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~-~~~~~~~~-~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~ 227 (351)
T cd00260 150 SGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWK-LGEGVNDA-GGCSECSVVELSDGKLYMYTRDNSGGRRPVYE 227 (351)
T ss_pred CeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcE-ECCCCCCC-CCCcCCEEEEecCCEEEEEEeeCCCCcEEEEE
Confidence 367774588776654 123444555567898 65544330 11124466666 89998887754 4455554
Q ss_pred EccCCCCCCCCCCccCCCCCCceEEEEEee
Q 043460 267 LDDHRHHSNSHGSNKAASGARSWILKHSIC 296 (368)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~ 296 (368)
-.+.+. .|+......
T Consensus 228 S~D~G~---------------tWs~~~~~~ 242 (351)
T cd00260 228 SRDMGT---------------TWTEALGTL 242 (351)
T ss_pred EcCCCc---------------CcccCcCCc
Confidence 444444 899876554
No 149
>PRK03629 tolB translocation protein TolB; Provisional
Probab=25.64 E-value=6.1e+02 Score=24.45 Aligned_cols=186 Identities=11% Similarity=0.031 Sum_probs=92.2
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....++++|..+++.+.+-..+. ......+.|. +. +++......+...+.+++.+++..+.......
T Consensus 221 g~~~i~i~dl~~G~~~~l~~~~~----~~~~~~~SPD--G~-~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~------ 287 (429)
T PRK03629 221 GRSALVIQTLANGAVRQVASFPR----HNGAPAFSPD--GS-KLAFALSKTGSLNLYVMDLASGQIRQVTDGRS------ 287 (429)
T ss_pred CCcEEEEEECCCCCeEEccCCCC----CcCCeEECCC--CC-EEEEEEcCCCCcEEEEEECCCCCEEEccCCCC------
Confidence 34578899998888776654331 1122445551 22 23332222234467778888877665432110
Q ss_pred eeccceEEEeCCe-EEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCe-EEEEEECCCeEEEEEEc
Q 043460 194 FYVLQSVYSRGGI-LYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGA-LNYASRNQSTLLIWQLD 268 (368)
Q Consensus 194 ~~~~~~v~~~~G~-lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~-L~~~~~~~~~~~IW~l~ 268 (368)
.........+|. |++... ...|..+|+.+.... .+........ . .....+|+ |+++........||.++
T Consensus 288 -~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~---~-~~~SpDG~~Ia~~~~~~g~~~I~~~d 361 (429)
T PRK03629 288 -NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ---D-ADVSSDGKFMVMVSSNGGQQHIAKQD 361 (429)
T ss_pred -CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc---C-EEECCCCCEEEEEEccCCCceEEEEE
Confidence 001111111443 444443 236778888887666 4422211111 1 11233564 55555444455677766
Q ss_pred cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEEEec
Q 043460 269 DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~~v~ 344 (368)
-.++ .+..+.. . .. . .. ..+.++|..|++. ....++..+++.+..+++.
T Consensus 362 l~~g---------------~~~~Lt~---~-~~-~------~~-p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 362 LATG---------------GVQVLTD---T-FL-D------ET-PSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CCCC---------------CeEEeCC---C-CC-C------CC-ceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence 5434 4443321 1 11 0 01 2356777766665 2234778888877777775
Q ss_pred c
Q 043460 345 T 345 (368)
Q Consensus 345 ~ 345 (368)
.
T Consensus 415 ~ 415 (429)
T PRK03629 415 A 415 (429)
T ss_pred c
Confidence 4
No 150
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=25.44 E-value=7.2e+02 Score=25.21 Aligned_cols=119 Identities=16% Similarity=0.133 Sum_probs=59.8
Q ss_pred eEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCC
Q 043460 206 ILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASG 285 (368)
Q Consensus 206 ~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~ 285 (368)
.||..+....+..|+++.+.|-.....-..... ...+ +....|..++..+..++.|-...-.. +|
T Consensus 147 Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN---~v~i-n~~hgLla~Gt~~g~VEfwDpR~ksr----v~------- 211 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN---VVSI-NEEHGLLACGTEDGVVEFWDPRDKSR----VG------- 211 (703)
T ss_pred cEEEeecCcceEEEEccccccccccccccccce---eeee-cCccceEEecccCceEEEecchhhhh----he-------
Confidence 466666688899999999999623332211111 1122 22345666666678899996554210 00
Q ss_pred CCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEEecc
Q 043460 286 ARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 286 ~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~v~~ 345 (368)
.=....+|+-....+.. -.+.-+.|..+ ++=+-+ ..+.++.||+++.+--.+.+
T Consensus 212 --~l~~~~~v~s~pg~~~~---~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 212 --TLDAASSVNSHPGGDAA---PSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPLLVKD 267 (703)
T ss_pred --eeecccccCCCcccccc---CcceEEEecCC-ceeEEeeccCCcEEEEEcccCCceeecc
Confidence 11111111111111110 11233344433 333333 67789999999988665554
No 151
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=25.21 E-value=1.5e+02 Score=17.30 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=17.9
Q ss_pred CCCEEEEe--eCCeEEEEECCCCeEEE
Q 043460 318 NSDIIFLG--SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 318 ~~~~v~~~--~~~~~~~ydl~t~~~~~ 342 (368)
+++.+|+. ....+..+|.++.+...
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~ 28 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIA 28 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 45566765 56788889998887643
No 152
>PF15408 PH_7: Pleckstrin homology domain
Probab=25.09 E-value=54 Score=23.82 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=19.9
Q ss_pred chhhHHHhhhhHHHHhhhcCCchh
Q 043460 20 VKSVVGFKIVSKTWNNLISKVCIP 43 (368)
Q Consensus 20 ~~~l~r~r~Vck~Wr~li~~~~f~ 43 (368)
++.++-.+-|||.|-.++.+|.|+
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhh
Confidence 455667788999999999998885
No 153
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=24.57 E-value=8.4e+02 Score=25.66 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=33.9
Q ss_pred CCeEEEEEcCCC-eEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEE-CCCeEEEEEEccC
Q 043460 213 RSTILRYNIEAL-SEAEIIEVPDKNNHPCDSEVIGLCKGALNYASR-NQSTLLIWQLDDH 270 (368)
Q Consensus 213 ~~~il~fD~~~~-~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~-~~~~~~IW~l~~~ 270 (368)
++.+-++|+..- .|+ ....|....- ....+...|-|.+++. +.-.+.||.++..
T Consensus 413 DGtVRAwDlkRYrNfR-Tft~P~p~Qf---scvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 413 DGTVRAWDLKRYRNFR-TFTSPEPIQF---SCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred CCeEEeeeecccceee-eecCCCceee---eEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 888999999884 667 6666655432 1122222476666665 5557888977743
No 154
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=24.55 E-value=6.1e+02 Score=24.03 Aligned_cols=106 Identities=10% Similarity=0.072 Sum_probs=0.0
Q ss_pred CeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccC
Q 043460 205 GILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKA 282 (368)
Q Consensus 205 G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~ 282 (368)
+.++.+.. .+.+.++|..+.+....++........ .....+|+..++...+..+.++-+.. .
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~----~~~s~Dgr~~yv~~rdg~vsviD~~~--~---------- 68 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAG----LKFSPDGRYLYVANRDGTVSVIDLAT--G---------- 68 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEE----EE-TT-SSEEEEEETTSEEEEEETTS--S----------
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeE----EEecCCCCEEEEEcCCCeEEEEECCc--c----------
Q ss_pred CCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEE
Q 043460 283 ASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~ 342 (368)
+ .+.+|....-. +-+++.++|..++.. ....+..+|.+|.+.-+
T Consensus 69 -----~--~v~~i~~G~~~---------~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~ 114 (369)
T PF02239_consen 69 -----K--VVATIKVGGNP---------RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK 114 (369)
T ss_dssp -----S--EEEEEE-SSEE---------EEEEE--TTTEEEEEEEETTEEEEEETTT--EEE
T ss_pred -----c--EEEEEecCCCc---------ceEEEcCCCCEEEEEecCCCceeEecccccccee
No 155
>PRK03629 tolB translocation protein TolB; Provisional
Probab=23.09 E-value=6.9e+02 Score=24.11 Aligned_cols=185 Identities=9% Similarity=0.022 Sum_probs=89.7
Q ss_pred CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceee
Q 043460 115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSF 194 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~ 194 (368)
..+++++|.-....+.+-..+ .......+.|. ++. ++.+........+.+++..++.-+..... +..
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~----~~~~~p~wSPD--G~~-la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~~----- 244 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSP----QPLMSPAWSPD--GSK-LAYVTFESGRSALVIQTLANGAVRQVASF-PRH----- 244 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCC----CceeeeEEcCC--CCE-EEEEEecCCCcEEEEEECCCCCeEEccCC-CCC-----
Confidence 457888887665555442211 11223344441 222 22222222345677788877764443311 110
Q ss_pred eccc-eEEEeCC-eEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCe-EEEEEECCCeEEEEEEc
Q 043460 195 YVLQ-SVYSRGG-ILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGA-LNYASRNQSTLLIWQLD 268 (368)
Q Consensus 195 ~~~~-~v~~~~G-~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~-L~~~~~~~~~~~IW~l~ 268 (368)
... ...- +| .|++... ...|..+|+.+.+.. .+ ....... ....-..+|+ |+++.......+||.++
T Consensus 245 -~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~-~l--t~~~~~~--~~~~wSPDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 245 -NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIR-QV--TDGRSNN--TEPTWFPDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred -cCCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEE-Ec--cCCCCCc--CceEECCCCCEEEEEeCCCCCceEEEEE
Confidence 011 1222 44 3665543 235888999888776 33 2111110 1111233565 55554444467899887
Q ss_pred cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEEEec
Q 043460 269 DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~~v~ 344 (368)
-.++ .-..+ ... . . ...-..+.++|+.|++. ....++.+|+++++++.+.
T Consensus 318 ~~~g---------------~~~~l---t~~--~-~-----~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 318 INGG---------------APQRI---TWE--G-S-----QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT 371 (429)
T ss_pred CCCC---------------CeEEe---ecC--C-C-----CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC
Confidence 6533 22222 111 0 0 01113456667666554 2346888999999888776
Q ss_pred c
Q 043460 345 T 345 (368)
Q Consensus 345 ~ 345 (368)
.
T Consensus 372 ~ 372 (429)
T PRK03629 372 D 372 (429)
T ss_pred C
Confidence 4
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=22.65 E-value=8.6e+02 Score=25.06 Aligned_cols=154 Identities=11% Similarity=-0.017 Sum_probs=71.9
Q ss_pred EEEecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC
Q 043460 98 ALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK 177 (368)
Q Consensus 98 ~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~ 177 (368)
.+..-++|.+...+ ..+.+-+||+.++...+ +-.........|+.++ +.=.|+..+.. ....+......+
T Consensus 209 Sv~~Lrd~tI~sgD--S~G~V~FWd~~~gTLiq---S~~~h~adVl~Lav~~---~~d~vfsaGvd--~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 209 SVLFLRDSTIASGD--SAGTVTFWDSIFGTLIQ---SHSCHDADVLALAVAD---NEDRVFSAGVD--PKIIQYSLTTNK 278 (691)
T ss_pred EEEEeecCcEEEec--CCceEEEEcccCcchhh---hhhhhhcceeEEEEcC---CCCeEEEccCC--CceEEEEecCCc
Confidence 34444666666665 57788899998876552 1111122344555444 23344444432 333343333333
Q ss_pred C-ceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEE
Q 043460 178 T-WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYAS 256 (368)
Q Consensus 178 ~-W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~ 256 (368)
+ |...... . .+...-+++.+ -+.+...++...++++...++.-..--.+|...... ....+.-+.+|.+..
T Consensus 279 ~~wv~~~~r---~--~h~hdvrs~av-~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~--~~v~~a~~~~L~~~w 350 (691)
T KOG2048|consen 279 SEWVINSRR---D--LHAHDVRSMAV-IENALISGGRDFTLAICSSREFKNMDHRQKNLFPAS--DRVSVAPENRLLVLW 350 (691)
T ss_pred cceeeeccc---c--CCcccceeeee-ecceEEecceeeEEEEccccccCchhhhcccccccc--ceeecCccceEEEEe
Confidence 3 8766521 1 11112223333 333444555677888877766111011122221111 122222334444433
Q ss_pred ECCCeEEEEEEccC
Q 043460 257 RNQSTLLIWQLDDH 270 (368)
Q Consensus 257 ~~~~~~~IW~l~~~ 270 (368)
.+..+.+|.+...
T Consensus 351 -~~h~v~lwrlGS~ 363 (691)
T KOG2048|consen 351 -KAHGVDLWRLGSV 363 (691)
T ss_pred -ccccccceeccCc
Confidence 4567788887765
No 157
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=22.58 E-value=6.8e+02 Score=23.84 Aligned_cols=114 Identities=22% Similarity=0.287 Sum_probs=0.0
Q ss_pred eEEEeCCeEEEEEeCCeEEEEE---cCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCC
Q 043460 199 SVYSRGGILYNLTYRSTILRYN---IEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSN 275 (368)
Q Consensus 199 ~v~~~~G~lywl~~~~~il~fD---~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~ 275 (368)
+|-++.|...|-.....-+.-+ ..+..-+ +.+-|...... ...-.+.++.|.=...++..+.||..+...+
T Consensus 157 avgCr~gIciW~~s~tln~~r~~~~~s~~~~q-vl~~pgh~pVt--smqwn~dgt~l~tAS~gsssi~iWdpdtg~~--- 230 (445)
T KOG2139|consen 157 AVGCRAGICIWSDSRTLNANRNIRMMSTHHLQ-VLQDPGHNPVT--SMQWNEDGTILVTASFGSSSIMIWDPDTGQK--- 230 (445)
T ss_pred eeeecceeEEEEcCcccccccccccccccchh-heeCCCCceee--EEEEcCCCCEEeecccCcceEEEEcCCCCCc---
Q ss_pred CCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeEEEEECCCCeEEE
Q 043460 276 SHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 276 ~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ydl~t~~~~~ 342 (368)
+++..... .++..+-..++++.+|....+.+++.=-+++.|++
T Consensus 231 -------------------~pL~~~gl-----gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~ 273 (445)
T KOG2139|consen 231 -------------------IPLIPKGL-----GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK 273 (445)
T ss_pred -------------------ccccccCC-----CceeeEEEcCCCCEEEEecccceeeeehhccccee
No 158
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.20 E-value=4.8e+02 Score=24.22 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=40.8
Q ss_pred CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECC
Q 043460 258 NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLK 336 (368)
Q Consensus 258 ~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~ 336 (368)
++.++.||.|.. .-+.+.+|..+. ...-+++...+.+|-+- +...+-.||+.
T Consensus 376 DDrTvKvWdLrN------------------MRsplATIRtdS---------~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 376 DDRTVKVWDLRN------------------MRSPLATIRTDS---------PANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred CCceEEEeeecc------------------ccCcceeeecCC---------ccceeEeecCCceEEeccCCceEEEEecC
Confidence 566788888776 344555665332 12335666544555554 77789999999
Q ss_pred CCeEEEecc
Q 043460 337 TNKMELFST 345 (368)
Q Consensus 337 t~~~~~v~~ 345 (368)
.+++-++..
T Consensus 429 G~RlaRlPr 437 (481)
T KOG0300|consen 429 GNRLARLPR 437 (481)
T ss_pred CCccccCCc
Confidence 999999885
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=21.42 E-value=3.9e+02 Score=26.52 Aligned_cols=64 Identities=11% Similarity=0.168 Sum_probs=42.6
Q ss_pred CeEEEEEECCCeEEEEEEccC--CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--
Q 043460 250 GALNYASRNQSTLLIWQLDDH--RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-- 325 (368)
Q Consensus 250 G~L~~~~~~~~~~~IW~l~~~--~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-- 325 (368)
-.|..+..+...+.+|-.+.- .. .|.+.|+-+-. -++|.+..+.+++.
T Consensus 177 r~lL~~asd~G~VtlwDv~g~sp~~---------------~~~~~HsAP~~-------------gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 177 RFLLSIASDKGAVTLWDVQGMSPIF---------------HASEAHSAPCR-------------GICFSPSNEALLVSVG 228 (673)
T ss_pred ceeeEeeccCCeEEEEeccCCCccc---------------chhhhccCCcC-------------cceecCCccceEEEec
Confidence 344445557788999988765 33 78888876532 24566655656555
Q ss_pred eCCeEEEEECCCCeEE
Q 043460 326 SCDMIYRYHLKTNKME 341 (368)
Q Consensus 326 ~~~~~~~ydl~t~~~~ 341 (368)
.+.+|+.||...++..
T Consensus 229 ~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 229 YDKKINIYDIRSQAST 244 (673)
T ss_pred ccceEEEeeccccccc
Confidence 5678888888877753
No 160
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.42 E-value=5.4e+02 Score=22.31 Aligned_cols=85 Identities=15% Similarity=0.091 Sum_probs=48.4
Q ss_pred eEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeecccccc-----CccccceEEEEEecC
Q 043460 244 VIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNK-----LHVFGLTRFYNIHPN 318 (368)
Q Consensus 244 ~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~ 318 (368)
....++|.-.++......+.+|-++..+- .... +.+..+-.. ......+.-..+..+
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~---------------~~~~---~Si~pll~~~~~~~~~~~~~i~~~~lt~~ 77 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKA---------------VLPP---VSIAPLLNSSPVSDKSSSPNITSCSLTSN 77 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCee---------------ccCC---ccHHHHhcccccccCCCCCcEEEEEEcCC
Confidence 44456666655555667899998887522 1111 221111110 000012233345555
Q ss_pred CCEEEEeeCCeEEEEECCCCeEEEeccC
Q 043460 319 SDIIFLGSCDMIYRYHLKTNKMELFSTR 346 (368)
Q Consensus 319 ~~~v~~~~~~~~~~ydl~t~~~~~v~~~ 346 (368)
|--|+....+..|.||.+=+.|.+|.++
T Consensus 78 G~PiV~lsng~~y~y~~~L~~W~~vsd~ 105 (219)
T PF07569_consen 78 GVPIVTLSNGDSYSYSPDLGCWIRVSDS 105 (219)
T ss_pred CCEEEEEeCCCEEEeccccceeEEeccc
Confidence 5544444777899999999999999874
No 161
>PRK04922 tolB translocation protein TolB; Provisional
Probab=21.36 E-value=7.4e+02 Score=23.84 Aligned_cols=143 Identities=9% Similarity=-0.009 Sum_probs=73.2
Q ss_pred CCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCC-eEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCC
Q 043460 165 MDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGG-ILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPC 240 (368)
Q Consensus 165 ~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G-~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~ 240 (368)
....+.+++..++.-+..... +.. .......- +| .+++... ...|..+|+.+.+.+ .+ .......
T Consensus 226 ~~~~l~~~dl~~g~~~~l~~~-~g~-----~~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~l--t~~~~~~- 294 (433)
T PRK04922 226 GRSAIYVQDLATGQRELVASF-RGI-----NGAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQLT-RL--TNHFGID- 294 (433)
T ss_pred CCcEEEEEECCCCCEEEeccC-CCC-----ccCceECC-CCCEEEEEEeCCCCceEEEEECCCCCeE-EC--ccCCCCc-
Confidence 345677788888776554321 100 00111222 45 3544433 346999999888766 32 1111110
Q ss_pred CceeEEeeCCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCC
Q 043460 241 DSEVIGLCKGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNS 319 (368)
Q Consensus 241 ~~~~l~~~~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 319 (368)
.... -..+|+ |++........+||.++-.++ +..++. .. ... ..-..+.++|
T Consensus 295 ~~~~-~spDG~~l~f~sd~~g~~~iy~~dl~~g---------------~~~~lt-~~-g~~---------~~~~~~SpDG 347 (433)
T PRK04922 295 TEPT-WAPDGKSIYFTSDRGGRPQIYRVAASGG---------------SAERLT-FQ-GNY---------NARASVSPDG 347 (433)
T ss_pred cceE-ECCCCCEEEEEECCCCCceEEEEECCCC---------------CeEEee-cC-CCC---------ccCEEECCCC
Confidence 0111 123565 444443334567888875434 444332 11 000 1113566777
Q ss_pred CEEEEee----CCeEEEEECCCCeEEEecc
Q 043460 320 DIIFLGS----CDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 320 ~~v~~~~----~~~~~~ydl~t~~~~~v~~ 345 (368)
+.|++.. ...++.+|+++++.+.+..
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred CEEEEEECCCCceeEEEEECCCCCeEECCC
Confidence 7666652 2369999999998887765
No 162
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=21.23 E-value=6.3e+02 Score=22.99 Aligned_cols=113 Identities=9% Similarity=0.090 Sum_probs=59.7
Q ss_pred CCeEEEEEe--CCeEEEEEcCCC-eEE----EEEeCCCCCCCCCCceeEE-eeCCe-EEEEEECCCeEEEEEEccCCCCC
Q 043460 204 GGILYNLTY--RSTILRYNIEAL-SEA----EIIEVPDKNNHPCDSEVIG-LCKGA-LNYASRNQSTLLIWQLDDHRHHS 274 (368)
Q Consensus 204 ~G~lywl~~--~~~il~fD~~~~-~~~----~~~~lP~~~~~~~~~~~l~-~~~G~-L~~~~~~~~~~~IW~l~~~~~~~ 274 (368)
+|...+... .+.|.+||+.+. ... ..+..|.... ...+. ..+|+ |+++......+.+|.++..++
T Consensus 136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~----p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-- 209 (330)
T PRK11028 136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG----PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-- 209 (330)
T ss_pred CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCC----CceEEECCCCCEEEEEecCCCEEEEEEEeCCCC--
Confidence 454433333 688999999763 222 0123333211 11233 33555 555555678999999986434
Q ss_pred CCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCC
Q 043460 275 NSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKT 337 (368)
Q Consensus 275 ~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t 337 (368)
+.+.+.++.. ++..........-+.+++++..+|.. ....+..|+.++
T Consensus 210 -------------~~~~~~~~~~--~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 210 -------------EIECVQTLDM--MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred -------------CEEEEEEEec--CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 5555555541 11110000111124567888888887 345677777643
No 163
>PRK05137 tolB translocation protein TolB; Provisional
Probab=21.23 E-value=7.4e+02 Score=23.82 Aligned_cols=137 Identities=10% Similarity=0.084 Sum_probs=67.1
Q ss_pred CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceee
Q 043460 115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSF 194 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~ 194 (368)
..+++++|.-++..+.+-.... ......+.| .+. +|+.+....+...+.+++..++..+..... +..
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~----~v~~p~wSp--DG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g~----- 247 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSS----LVLTPRFSP--NRQ-EITYMSYANGRPRVYLLDLETGQRELVGNF-PGM----- 247 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCC----CeEeeEECC--CCC-EEEEEEecCCCCEEEEEECCCCcEEEeecC-CCc-----
Confidence 4588899987766666543321 112233444 122 343333322456788889888877655421 100
Q ss_pred eccceEEEeCCe-EEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCe-EEEEEECCCeEEEEEEcc
Q 043460 195 YVLQSVYSRGGI-LYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGA-LNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 195 ~~~~~v~~~~G~-lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~-L~~~~~~~~~~~IW~l~~ 269 (368)
.......- +|. |.+... ...|..+|+.+...+....-+. ... ... -..+|+ |++........+||.++-
T Consensus 248 ~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~-~~~---~~~-~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 248 TFAPRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPA-IDT---SPS-YSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred ccCcEECC-CCCEEEEEEecCCCceEEEEECCCCceEEccCCCC-ccC---cee-EcCCCCEEEEEECCCCCCeEEEEEC
Confidence 00111222 453 444333 3568888998887661222221 110 111 123554 555443334567888775
Q ss_pred C
Q 043460 270 H 270 (368)
Q Consensus 270 ~ 270 (368)
.
T Consensus 322 ~ 322 (435)
T PRK05137 322 D 322 (435)
T ss_pred C
Confidence 4
No 164
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.74 E-value=81 Score=25.22 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=15.0
Q ss_pred EEEeCCeEEEEEe-----CCeEEEEEcCC
Q 043460 200 VYSRGGILYNLTY-----RSTILRYNIEA 223 (368)
Q Consensus 200 v~~~~G~lywl~~-----~~~il~fD~~~ 223 (368)
+.- +|.|||+.. ...|+.|+..+
T Consensus 44 ll~-GGSlYWVikg~i~~RQ~Il~i~~~~ 71 (137)
T PF07370_consen 44 LLD-GGSLYWVIKGQIQCRQRILDIEEVT 71 (137)
T ss_pred hcc-CCcEEEEECCEEEEeeeeeeeeEec
Confidence 555 899999884 34455555444
No 165
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=20.07 E-value=7.6e+02 Score=23.45 Aligned_cols=101 Identities=12% Similarity=0.247 Sum_probs=53.2
Q ss_pred CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEE
Q 043460 213 RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILK 292 (368)
Q Consensus 213 ~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~ 292 (368)
+..-..+|..+..|- ..++...... .......+|.+.....-...+.||....... .|...
T Consensus 85 DD~AflW~~~~ge~~--~eltgHKDSV--t~~~FshdgtlLATGdmsG~v~v~~~stg~~---------------~~~~~ 145 (399)
T KOG0296|consen 85 DDLAFLWDISTGEFA--GELTGHKDSV--TCCSFSHDGTLLATGDMSGKVLVFKVSTGGE---------------QWKLD 145 (399)
T ss_pred CceEEEEEccCCcce--eEecCCCCce--EEEEEccCceEEEecCCCccEEEEEcccCce---------------EEEee
Confidence 455666777777743 3444332211 1122233555444444456788888887655 78776
Q ss_pred EEee-eccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEEecc
Q 043460 293 HSIC-MDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 293 ~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~v~~ 345 (368)
.++. +. + +.-|+.+.+++.. .+..+.+|....+...++-.
T Consensus 146 ~e~~die------------W-l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~ 187 (399)
T KOG0296|consen 146 QEVEDIE------------W-LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS 187 (399)
T ss_pred cccCceE------------E-EEecccccEEEeecCCCcEEEEECCCcceeeEec
Confidence 4443 21 1 1224445555554 45567777777655555443
Done!