Query 043460
Match_columns 368
No_of_seqs 121 out of 1604
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 08:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2woz_A Kelch repeat and BTB do 99.3 1.6E-09 5.5E-14 99.3 23.3 183 118-344 80-294 (318)
2 3ii7_A Kelch-like protein 7; p 99.2 7.6E-10 2.6E-14 100.8 20.5 199 103-345 54-280 (306)
3 2xn4_A Kelch-like protein 2; s 99.2 1.3E-09 4.6E-14 99.0 21.5 186 116-344 77-283 (302)
4 2vpj_A Kelch-like protein 12; 99.2 2.1E-09 7.2E-14 97.6 22.4 188 115-345 77-286 (301)
5 4asc_A Kelch repeat and BTB do 99.2 2.7E-09 9.2E-14 97.7 22.5 186 117-345 68-285 (315)
6 1zgk_A Kelch-like ECH-associat 99.2 3.9E-09 1.3E-13 96.3 22.0 187 116-345 90-295 (308)
7 3ii7_A Kelch-like protein 7; p 99.2 8.9E-09 3E-13 93.7 23.1 188 115-345 23-233 (306)
8 1zgk_A Kelch-like ECH-associat 99.1 6E-09 2.1E-13 95.0 20.1 189 114-345 37-248 (308)
9 2vpj_A Kelch-like protein 12; 99.1 2.3E-08 8E-13 90.6 23.4 188 115-345 30-239 (301)
10 2xn4_A Kelch-like protein 2; s 99.1 2.5E-08 8.7E-13 90.4 22.8 187 116-345 30-237 (302)
11 2uvk_A YJHT; unknown function, 99.0 4E-08 1.4E-12 91.3 21.5 203 104-345 19-302 (357)
12 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 3.6E-10 1.2E-14 74.7 4.4 39 4-42 10-48 (53)
13 4asc_A Kelch repeat and BTB do 98.9 1.4E-07 4.9E-12 86.1 21.2 188 116-345 13-229 (315)
14 2woz_A Kelch repeat and BTB do 98.9 1.6E-07 5.6E-12 85.8 20.0 187 117-345 25-239 (318)
15 2e31_A FBS1, F-box only protei 98.9 9.1E-10 3.1E-14 98.7 3.6 44 3-46 51-95 (297)
16 2uvk_A YJHT; unknown function, 98.7 8.1E-07 2.8E-11 82.4 19.3 190 116-344 86-349 (357)
17 2ovr_B FBW7, F-BOX/WD repeat p 98.5 0.00034 1.2E-08 66.3 32.1 236 4-269 20-268 (445)
18 3v7d_B Cell division control p 98.5 0.00018 6.3E-09 68.4 30.0 290 5-342 17-346 (464)
19 2zwa_A Leucine carboxyl methyl 98.5 4.7E-06 1.6E-10 84.6 19.6 212 103-344 396-642 (695)
20 1p22_A F-BOX/WD-repeat protein 98.4 0.00017 5.9E-09 68.3 25.7 239 5-269 13-285 (435)
21 1k3i_A Galactose oxidase precu 98.2 3E-05 1E-09 78.1 16.8 212 100-345 249-505 (656)
22 1k3i_A Galactose oxidase precu 98.1 4.9E-05 1.7E-09 76.5 14.7 194 118-342 168-383 (656)
23 3l2o_B F-box only protein 4; s 97.8 1.1E-05 3.9E-10 71.5 3.2 38 5-42 7-44 (312)
24 2zwa_A Leucine carboxyl methyl 97.7 0.0003 1E-08 71.3 13.7 155 166-345 411-591 (695)
25 2ast_B S-phase kinase-associat 97.3 0.00011 3.9E-09 67.1 3.4 39 4-42 10-48 (336)
26 2p1m_B Transport inhibitor res 96.7 0.00064 2.2E-08 67.1 3.2 33 4-36 7-40 (594)
27 3dsm_A Uncharacterized protein 96.6 0.36 1.2E-05 43.4 22.1 194 103-341 52-257 (328)
28 3ogk_B Coronatine-insensitive 96.5 0.0011 3.7E-08 65.5 2.7 34 4-37 14-48 (592)
29 3u4y_A Uncharacterized protein 95.3 1.4 4.8E-05 38.8 22.4 192 103-340 8-210 (331)
30 3mbr_X Glutamine cyclotransfer 94.9 1.1 3.9E-05 38.6 15.1 110 198-341 24-137 (243)
31 2z2n_A Virginiamycin B lyase; 94.7 1.9 6.5E-05 37.1 22.5 189 102-341 107-299 (299)
32 3dsm_A Uncharacterized protein 94.5 2.5 8.5E-05 37.8 24.4 197 104-342 2-217 (328)
33 3scy_A Hypothetical bacterial 94.4 2.6 9.1E-05 37.7 25.4 118 204-345 221-347 (361)
34 4gga_A P55CDC, cell division c 94.3 3.2 0.00011 38.2 19.7 151 98-270 109-262 (420)
35 1l0q_A Surface layer protein; 93.9 3.5 0.00012 37.1 20.6 187 106-343 3-195 (391)
36 3hfq_A Uncharacterized protein 93.9 3.3 0.00011 36.8 22.5 169 142-345 143-327 (347)
37 3nol_A Glutamine cyclotransfer 93.3 1.7 5.7E-05 37.9 13.1 110 198-341 46-159 (262)
38 3hfq_A Uncharacterized protein 92.5 5.4 0.00018 35.3 23.6 214 102-343 48-278 (347)
39 3e5z_A Putative gluconolactona 92.5 4.9 0.00017 34.8 18.5 195 102-342 77-291 (296)
40 3q7m_A Lipoprotein YFGL, BAMB; 92.4 6 0.0002 35.7 19.4 110 103-227 52-166 (376)
41 3jro_A Fusion protein of prote 92.3 5.5 0.00019 40.1 17.5 190 114-339 29-240 (753)
42 2iwa_A Glutamine cyclotransfer 92.2 4.2 0.00014 35.5 14.3 107 205-344 32-143 (266)
43 3g4e_A Regucalcin; six bladed 91.8 6.1 0.00021 34.4 22.0 199 101-345 21-238 (297)
44 3nok_A Glutaminyl cyclase; bet 91.4 2.4 8.3E-05 37.0 11.6 110 198-342 58-169 (268)
45 3bws_A Protein LP49; two-domai 91.3 8.4 0.00029 35.1 21.8 192 102-344 178-397 (433)
46 1l0q_A Surface layer protein; 90.6 9.1 0.00031 34.3 23.5 189 104-343 85-281 (391)
47 1ri6_A Putative isomerase YBHE 90.5 8.2 0.00028 33.6 21.2 206 104-343 49-270 (343)
48 4aez_A CDC20, WD repeat-contai 90.5 9.9 0.00034 34.5 19.4 136 114-269 111-248 (401)
49 3vgz_A Uncharacterized protein 90.4 8.7 0.0003 33.7 25.3 204 99-343 95-309 (353)
50 3jrp_A Fusion protein of prote 90.0 9.7 0.00033 33.6 21.5 189 114-338 31-241 (379)
51 4gqb_B Methylosome protein 50; 89.7 11 0.00037 33.7 17.6 198 102-344 91-296 (344)
52 1nir_A Nitrite reductase; hemo 89.5 16 0.00053 35.3 21.3 203 106-340 239-461 (543)
53 2dg1_A DRP35, lactonase; beta 89.3 11 0.00036 33.1 22.0 204 102-345 53-271 (333)
54 3ei3_B DNA damage-binding prot 89.3 12 0.0004 33.6 22.6 192 106-339 88-284 (383)
55 3bws_A Protein LP49; two-domai 89.0 13 0.00045 33.8 19.8 193 104-343 133-340 (433)
56 3k26_A Polycomb protein EED; W 88.6 12 0.00041 32.8 18.1 192 114-337 136-366 (366)
57 3i2n_A WD repeat-containing pr 88.5 12 0.00041 32.7 20.7 204 114-339 137-355 (357)
58 2hqs_A Protein TOLB; TOLB, PAL 87.9 16 0.00056 33.5 20.8 183 116-345 203-395 (415)
59 3vl1_A 26S proteasome regulato 87.7 16 0.00053 33.0 20.3 94 166-270 268-366 (420)
60 3o4h_A Acylamino-acid-releasin 87.5 14 0.00047 35.6 15.3 146 104-267 122-274 (582)
61 3no2_A Uncharacterized protein 87.0 14 0.00048 31.9 17.8 188 103-340 3-198 (276)
62 1gxr_A ESG1, transducin-like e 86.9 14 0.00049 31.8 21.8 198 102-345 60-263 (337)
63 3dwl_C Actin-related protein 2 86.7 13 0.00044 33.1 13.7 198 114-340 31-239 (377)
64 4e54_B DNA damage-binding prot 86.2 20 0.0007 32.9 17.1 149 104-270 131-283 (435)
65 3q7m_A Lipoprotein YFGL, BAMB; 86.1 13 0.00045 33.3 13.5 113 198-341 48-166 (376)
66 3fm0_A Protein CIAO1; WDR39,SG 86.1 18 0.0006 32.1 18.2 192 104-335 27-223 (345)
67 2qc5_A Streptogramin B lactona 85.3 16 0.00056 31.0 21.1 191 102-343 70-265 (300)
68 3jrp_A Fusion protein of prote 85.3 19 0.00064 31.7 18.3 197 114-345 77-296 (379)
69 2bkl_A Prolyl endopeptidase; m 84.6 33 0.0011 33.9 21.1 190 116-345 202-405 (695)
70 1ri6_A Putative isomerase YBHE 84.6 19 0.00065 31.1 26.2 204 102-345 92-318 (343)
71 3vgz_A Uncharacterized protein 84.5 20 0.00068 31.3 26.6 190 115-342 68-267 (353)
72 4g56_B MGC81050 protein; prote 84.4 22 0.00075 31.7 16.7 197 102-343 103-307 (357)
73 1q7f_A NHL, brain tumor CG1071 84.2 18 0.00063 30.7 18.4 148 103-270 130-281 (286)
74 3e5z_A Putative gluconolactona 84.2 19 0.00065 30.8 20.0 186 114-345 48-254 (296)
75 2qc5_A Streptogramin B lactona 84.0 19 0.00064 30.6 21.7 146 100-269 26-174 (300)
76 2z2n_A Virginiamycin B lyase; 84.0 19 0.00064 30.6 21.1 191 102-343 23-218 (299)
77 1k8k_C P40, ARP2/3 complex 41 83.8 22 0.00075 31.2 19.3 195 114-341 28-237 (372)
78 4aow_A Guanine nucleotide-bind 83.7 21 0.00071 30.9 19.9 143 166-339 194-339 (340)
79 3dwl_C Actin-related protein 2 83.6 23 0.00079 31.3 14.8 203 103-344 65-288 (377)
80 3v65_B Low-density lipoprotein 82.9 28 0.00095 31.7 19.8 143 104-270 87-233 (386)
81 2p4o_A Hypothetical protein; p 82.6 19 0.00065 31.4 12.6 104 204-339 42-149 (306)
82 1p22_A F-BOX/WD-repeat protein 82.4 29 0.001 31.7 17.2 143 166-342 275-419 (435)
83 1q7f_A NHL, brain tumor CG1071 81.9 23 0.00078 30.1 23.0 201 102-345 38-246 (286)
84 2ghs_A AGR_C_1268P; regucalcin 81.7 24 0.00082 31.1 13.0 47 204-256 60-107 (326)
85 1npe_A Nidogen, entactin; glyc 81.3 24 0.00081 29.8 12.8 110 142-268 38-152 (267)
86 3sjl_D Methylamine dehydrogena 80.7 27 0.00092 32.1 13.0 117 204-348 237-376 (386)
87 1gxr_A ESG1, transducin-like e 80.6 27 0.00091 30.0 21.3 181 114-342 117-301 (337)
88 1yr2_A Prolyl oligopeptidase; 80.5 49 0.0017 33.0 21.4 156 153-345 279-449 (741)
89 2ojh_A Uncharacterized protein 80.5 24 0.00083 29.4 19.7 183 114-345 20-214 (297)
90 3i2n_A WD repeat-containing pr 80.4 28 0.00097 30.2 17.3 144 115-269 43-199 (357)
91 1qks_A Cytochrome CD1 nitrite 80.2 44 0.0015 32.3 23.7 196 104-342 166-378 (567)
92 1r5m_A SIR4-interacting protei 80.1 32 0.0011 30.6 17.7 205 104-336 217-424 (425)
93 1kb0_A Quinohemoprotein alcoho 79.6 26 0.00089 34.8 13.6 34 199-233 124-157 (677)
94 1erj_A Transcriptional repress 79.0 36 0.0012 30.6 24.2 208 102-342 132-346 (393)
95 2aq5_A Coronin-1A; WD40 repeat 78.2 38 0.0013 30.4 23.9 202 104-345 93-309 (402)
96 1nir_A Nitrite reductase; hemo 78.2 49 0.0017 31.7 22.6 196 102-343 146-361 (543)
97 3nok_A Glutaminyl cyclase; bet 78.1 34 0.0011 29.7 17.1 137 168-342 76-215 (268)
98 3hrp_A Uncharacterized protein 78.1 42 0.0014 30.8 13.8 110 204-343 141-255 (409)
99 3v9f_A Two-component system se 78.0 59 0.002 32.5 22.4 200 104-345 417-619 (781)
100 3u4y_A Uncharacterized protein 77.8 34 0.0012 29.5 22.7 193 117-345 109-312 (331)
101 3scy_A Hypothetical bacterial 77.5 37 0.0013 29.9 20.6 199 117-344 30-249 (361)
102 3fm0_A Protein CIAO1; WDR39,SG 77.5 37 0.0013 29.9 16.3 144 166-341 37-185 (345)
103 2hqs_A Protein TOLB; TOLB, PAL 77.5 43 0.0015 30.6 21.0 184 116-345 159-352 (415)
104 3fvz_A Peptidyl-glycine alpha- 77.2 37 0.0013 29.7 14.8 159 104-270 154-323 (329)
105 2ojh_A Uncharacterized protein 76.9 31 0.0011 28.7 20.5 197 102-344 50-265 (297)
106 3sfz_A APAF-1, apoptotic pepti 76.4 82 0.0028 33.3 20.3 199 102-342 624-833 (1249)
107 3m0c_C LDL receptor, low-densi 76.3 70 0.0024 32.4 22.0 162 140-345 471-641 (791)
108 1yfq_A Cell cycle arrest prote 76.1 38 0.0013 29.2 19.0 203 106-343 71-288 (342)
109 2pm9_A Protein WEB1, protein t 75.7 44 0.0015 29.8 18.1 191 114-340 134-340 (416)
110 1kv9_A Type II quinohemoprotei 74.9 63 0.0022 31.9 14.8 33 199-232 113-145 (668)
111 4ggc_A P55CDC, cell division c 73.4 42 0.0014 28.5 20.5 148 102-270 34-182 (318)
112 4a11_B DNA excision repair pro 72.9 50 0.0017 29.2 18.3 199 114-341 64-280 (408)
113 3tc9_A Hypothetical hydrolase; 72.6 40 0.0014 31.2 12.1 108 204-343 149-263 (430)
114 3sfz_A APAF-1, apoptotic pepti 72.6 1E+02 0.0034 32.6 18.8 180 114-340 981-1161(1249)
115 3azo_A Aminopeptidase; POP fam 72.3 73 0.0025 30.8 18.9 192 116-345 161-377 (662)
116 3sov_A LRP-6, low-density lipo 70.3 57 0.0019 28.7 12.6 60 204-268 46-109 (318)
117 2iwa_A Glutamine cyclotransfer 70.2 53 0.0018 28.3 22.5 160 143-342 24-186 (266)
118 1npe_A Nidogen, entactin; glyc 69.5 49 0.0017 27.7 22.9 195 100-345 43-247 (267)
119 2xdw_A Prolyl endopeptidase; a 69.4 90 0.0031 30.7 23.6 163 144-344 237-423 (710)
120 1yiq_A Quinohemoprotein alcoho 69.2 93 0.0032 30.8 15.6 28 199-227 117-144 (689)
121 3mbr_X Glutamine cyclotransfer 69.0 54 0.0018 27.9 21.5 142 165-343 41-185 (243)
122 3vl1_A 26S proteasome regulato 68.9 64 0.0022 28.8 22.8 193 102-339 106-324 (420)
123 1got_B GT-beta; complex (GTP-b 68.6 60 0.0021 28.4 21.2 191 103-340 65-260 (340)
124 3no2_A Uncharacterized protein 68.3 56 0.0019 27.9 11.9 147 165-344 13-162 (276)
125 3g4e_A Regucalcin; six bladed 67.6 59 0.002 27.9 19.6 139 166-340 34-185 (297)
126 1yiq_A Quinohemoprotein alcoho 66.9 66 0.0023 31.9 12.9 120 197-341 64-196 (689)
127 4a0p_A LRP6, LRP-6, low-densit 66.9 1E+02 0.0034 30.3 20.4 135 115-270 14-154 (628)
128 3nol_A Glutamine cyclotransfer 66.9 62 0.0021 27.9 17.7 142 165-343 63-207 (262)
129 3zwl_B Eukaryotic translation 66.6 63 0.0022 27.9 23.3 198 102-343 41-255 (369)
130 3jro_A Fusion protein of prote 66.6 93 0.0032 31.0 14.1 107 204-338 20-133 (753)
131 2ad6_A Methanol dehydrogenase 66.4 96 0.0033 29.9 14.2 120 197-342 56-190 (571)
132 1jmx_B Amine dehydrogenase; ox 66.1 64 0.0022 27.7 13.5 111 204-339 10-136 (349)
133 3dr2_A Exported gluconolactona 66.0 64 0.0022 27.7 16.8 196 102-345 54-275 (305)
134 3f3f_A Nucleoporin SEH1; struc 66.0 61 0.0021 27.5 15.3 115 204-339 22-145 (351)
135 1kv9_A Type II quinohemoprotei 65.8 81 0.0028 31.1 13.3 120 197-342 60-192 (668)
136 3dr2_A Exported gluconolactona 65.7 39 0.0013 29.1 10.0 56 204-266 55-113 (305)
137 2fp8_A Strictosidine synthase; 65.7 67 0.0023 27.8 13.2 29 204-233 29-58 (322)
138 1flg_A Protein (quinoprotein e 65.2 1E+02 0.0035 29.8 14.5 123 197-342 62-198 (582)
139 1ijq_A LDL receptor, low-densi 65.0 71 0.0024 27.9 20.5 132 115-269 9-150 (316)
140 1k8k_C P40, ARP2/3 complex 41 64.9 70 0.0024 27.8 18.4 158 142-336 11-172 (372)
141 1kb0_A Quinohemoprotein alcoho 64.7 51 0.0017 32.6 11.6 119 197-342 71-204 (677)
142 1pjx_A Dfpase, DIISOPROPYLFLUO 64.5 66 0.0022 27.3 12.2 113 204-343 28-167 (314)
143 1qks_A Cytochrome CD1 nitrite 63.7 1.1E+02 0.0037 29.5 13.9 108 204-342 166-280 (567)
144 1n7d_A LDL receptor, low-densi 63.0 48 0.0017 33.0 11.0 107 204-342 507-619 (699)
145 3v65_B Low-density lipoprotein 62.3 91 0.0031 28.2 22.4 195 101-345 124-327 (386)
146 3ow8_A WD repeat-containing pr 61.8 80 0.0027 27.4 24.5 190 104-342 91-284 (321)
147 4a11_B DNA excision repair pro 61.3 85 0.0029 27.5 20.3 148 106-270 114-277 (408)
148 2oiz_A Aromatic amine dehydrog 61.1 90 0.0031 27.7 12.8 41 288-338 295-335 (361)
149 2ad6_A Methanol dehydrogenase 60.9 1E+02 0.0034 29.8 12.6 34 199-233 111-144 (571)
150 3zwl_B Eukaryotic translation 60.8 81 0.0028 27.1 13.9 117 204-340 85-210 (369)
151 3mkq_A Coatomer beta'-subunit; 60.7 1.3E+02 0.0046 29.6 20.1 180 114-341 33-221 (814)
152 2hz6_A Endoplasmic reticulum t 60.5 4.6 0.00016 36.8 2.8 28 199-227 5-32 (369)
153 4hw6_A Hypothetical protein, I 60.2 1.1E+02 0.0037 28.3 12.8 53 198-257 142-200 (433)
154 3m0c_C LDL receptor, low-densi 59.7 1.5E+02 0.0052 29.9 21.2 60 204-269 482-544 (791)
155 1rwi_B Serine/threonine-protei 59.2 75 0.0026 26.2 21.2 192 102-344 32-229 (270)
156 3v64_C Agrin; beta propeller, 59.2 97 0.0033 27.5 22.6 142 104-270 44-190 (349)
157 2mad_H Methylamine dehydrogena 59.1 1E+02 0.0035 27.7 14.2 113 204-343 224-356 (373)
158 2fp8_A Strictosidine synthase; 58.8 90 0.0031 27.0 17.6 135 116-269 165-313 (322)
159 2dg1_A DRP35, lactonase; beta 58.6 88 0.003 26.9 17.0 136 166-337 65-213 (333)
160 1pby_B Quinohemoprotein amine 58.2 86 0.0029 26.6 15.3 105 213-342 10-129 (337)
161 3p5b_L Low density lipoprotein 58.1 1.1E+02 0.0038 27.8 20.6 141 105-270 84-233 (400)
162 3c75_H MADH, methylamine dehyd 56.6 1.2E+02 0.0043 28.0 13.1 111 205-342 277-407 (426)
163 3sre_A PON1, serum paraoxonase 56.1 1.2E+02 0.0039 27.4 17.8 155 104-269 60-252 (355)
164 3k26_A Polycomb protein EED; W 55.8 99 0.0034 26.6 16.6 107 205-340 85-195 (366)
165 4e54_B DNA damage-binding prot 55.6 1.2E+02 0.0041 27.5 16.7 32 311-342 404-435 (435)
166 3lrv_A PRE-mRNA-splicing facto 54.6 1.1E+02 0.0037 26.6 21.9 154 104-272 138-295 (343)
167 3mmy_A MRNA export factor; mRN 52.5 1.1E+02 0.0038 26.2 11.8 71 250-345 54-125 (368)
168 2ghs_A AGR_C_1268P; regucalcin 52.5 1.2E+02 0.004 26.4 20.1 145 100-268 56-209 (326)
169 4aez_A CDC20, WD repeat-contai 52.3 1.3E+02 0.0044 26.8 23.6 98 213-341 283-384 (401)
170 2xyi_A Probable histone-bindin 51.9 1.4E+02 0.0047 27.0 16.3 147 106-270 196-354 (430)
171 1rwi_B Serine/threonine-protei 51.5 1E+02 0.0034 25.4 20.5 186 103-339 76-266 (270)
172 1flg_A Protein (quinoprotein e 51.4 99 0.0034 29.9 10.8 80 168-258 467-548 (582)
173 1w6s_A Methanol dehydrogenase 51.3 1.8E+02 0.006 28.3 12.6 29 197-226 56-86 (599)
174 3dm0_A Maltose-binding peripla 51.0 1.8E+02 0.0063 28.2 20.2 193 102-342 439-637 (694)
175 2hes_X YDR267CP; beta-propelle 50.8 1.2E+02 0.0042 26.2 11.1 72 249-343 118-190 (330)
176 3hrp_A Uncharacterized protein 50.0 1.5E+02 0.0051 26.9 20.7 208 102-345 139-362 (409)
177 4ery_A WD repeat-containing pr 49.8 1.2E+02 0.0041 25.7 22.7 183 114-343 43-229 (312)
178 1w6s_A Methanol dehydrogenase 49.5 1.1E+02 0.0038 29.8 10.8 79 168-258 454-535 (599)
179 1sq9_A Antiviral protein SKI8; 48.9 1.4E+02 0.0047 26.2 20.9 144 114-269 146-322 (397)
180 2z3z_A Dipeptidyl aminopeptida 48.6 2E+02 0.0067 27.9 24.1 149 167-345 235-399 (706)
181 3odt_A Protein DOA1; ubiquitin 47.4 1.2E+02 0.0042 25.2 12.2 105 204-340 195-299 (313)
182 1jof_A Carboxy-CIS,CIS-muconat 47.3 1.5E+02 0.005 26.1 19.7 185 120-340 20-229 (365)
183 4ggc_A P55CDC, cell division c 47.1 1.3E+02 0.0043 25.3 15.2 141 114-269 170-315 (318)
184 3iuj_A Prolyl endopeptidase; h 46.0 2.2E+02 0.0077 27.8 22.6 162 144-345 238-413 (693)
185 4g56_B MGC81050 protein; prote 45.6 1.6E+02 0.0054 25.9 14.6 150 102-270 51-214 (357)
186 1jmx_B Amine dehydrogenase; ox 45.5 1.4E+02 0.0049 25.4 17.5 144 166-342 20-180 (349)
187 3v64_C Agrin; beta propeller, 44.6 1.7E+02 0.0057 25.9 23.3 146 101-269 81-232 (349)
188 3lrv_A PRE-mRNA-splicing facto 44.4 1.6E+02 0.0053 25.5 21.2 155 98-270 88-245 (343)
189 4a0p_A LRP6, LRP-6, low-densit 43.9 2.4E+02 0.0081 27.5 14.8 59 204-269 48-109 (628)
190 2p4o_A Hypothetical protein; p 43.9 1.5E+02 0.0052 25.3 22.0 150 104-269 42-198 (306)
191 1n7d_A LDL receptor, low-densi 43.4 2E+02 0.007 28.4 11.9 66 199-269 544-612 (699)
192 1got_B GT-beta; complex (GTP-b 42.3 1.7E+02 0.0058 25.3 16.5 102 213-342 76-178 (340)
193 3v7d_B Cell division control p 42.0 2E+02 0.0067 26.0 22.8 105 204-342 321-426 (464)
194 3iz6_a 40S ribosomal protein R 41.6 1.8E+02 0.0063 25.6 19.5 147 166-341 179-333 (380)
195 3s94_A LRP-6, low-density lipo 41.3 2.6E+02 0.0088 27.2 21.2 194 102-345 358-559 (619)
196 3bg1_A Protein SEC13 homolog; 40.8 1.7E+02 0.0058 25.0 15.5 114 103-227 23-141 (316)
197 3bg1_A Protein SEC13 homolog; 40.8 1.7E+02 0.0059 25.0 16.9 208 105-345 71-302 (316)
198 2ece_A 462AA long hypothetical 39.5 1.6E+02 0.0054 27.7 9.6 104 213-336 227-351 (462)
199 2qe8_A Uncharacterized protein 39.2 1.9E+02 0.0066 25.1 14.5 70 199-268 71-153 (343)
200 1r5m_A SIR4-interacting protei 39.2 2E+02 0.0067 25.2 21.2 197 103-343 118-325 (425)
201 3ei3_B DNA damage-binding prot 38.7 2E+02 0.0068 25.1 13.8 105 213-345 95-202 (383)
202 1sq9_A Antiviral protein SKI8; 38.4 2E+02 0.0068 25.1 21.2 209 106-342 82-327 (397)
203 4a2l_A BT_4663, two-component 38.2 3.1E+02 0.011 27.2 20.5 205 98-343 92-297 (795)
204 3v9f_A Two-component system se 38.0 3.1E+02 0.011 27.1 19.8 137 104-256 460-600 (781)
205 4hvt_A Ritya.17583.B, post-pro 37.8 2.5E+02 0.0084 28.0 11.4 117 201-345 297-437 (711)
206 3mkq_A Coatomer beta'-subunit; 37.4 3.1E+02 0.01 26.9 23.6 182 114-342 75-264 (814)
207 3amr_A 3-phytase; beta-propell 36.8 2.4E+02 0.0081 25.4 17.6 144 115-269 98-263 (355)
208 3azo_A Aminopeptidase; POP fam 36.7 2.9E+02 0.0099 26.4 20.0 213 104-345 90-333 (662)
209 4aow_A Guanine nucleotide-bind 36.3 2E+02 0.0067 24.3 19.0 148 105-269 51-204 (340)
210 3mmy_A MRNA export factor; mRN 36.0 2E+02 0.0069 24.4 24.3 195 114-343 106-310 (368)
211 2pm9_A Protein WEB1, protein t 35.4 2.3E+02 0.0078 24.8 14.6 152 105-270 178-338 (416)
212 2aq5_A Coronin-1A; WD40 repeat 35.1 2.4E+02 0.008 24.9 21.0 143 114-269 55-207 (402)
213 3sov_A LRP-6, low-density lipo 34.8 2.3E+02 0.0078 24.7 20.7 193 103-345 45-247 (318)
214 1pby_B Quinohemoprotein amine 34.7 2E+02 0.007 24.1 26.4 111 114-233 9-134 (337)
215 2vdu_B TRNA (guanine-N(7)-)-me 34.7 2.6E+02 0.0088 25.2 25.3 196 114-343 169-399 (450)
216 4gqb_B Methylosome protein 50; 34.6 2.3E+02 0.008 24.7 13.8 69 254-345 97-166 (344)
217 2pm7_B Protein transport prote 34.4 2.1E+02 0.0071 24.1 19.9 195 103-338 19-239 (297)
218 3gre_A Serine/threonine-protei 34.0 2.5E+02 0.0086 24.9 11.0 62 205-269 182-245 (437)
219 3frx_A Guanine nucleotide-bind 33.8 2.2E+02 0.0076 24.2 23.2 193 102-340 74-270 (319)
220 3dm0_A Maltose-binding peripla 33.5 3.4E+02 0.012 26.3 20.4 138 114-269 492-632 (694)
221 2be1_A Serine/threonine-protei 33.1 2.6E+02 0.009 24.9 10.4 28 318-345 110-138 (339)
222 4gga_A P55CDC, cell division c 32.5 2.7E+02 0.0092 24.8 14.8 93 166-270 300-396 (420)
223 2ovr_B FBW7, F-BOX/WD repeat p 32.5 2.7E+02 0.0094 24.9 24.4 93 166-269 298-391 (445)
224 3ow8_A WD repeat-containing pr 32.4 2.4E+02 0.0082 24.2 20.3 184 114-342 56-242 (321)
225 3p5b_L Low density lipoprotein 31.1 2.9E+02 0.01 24.8 17.9 61 204-269 257-318 (400)
226 3fvz_A Peptidyl-glycine alpha- 30.9 2.6E+02 0.0087 24.0 23.0 126 103-234 100-238 (329)
227 3kvp_A Uncharacterized protein 30.7 42 0.0014 22.2 2.9 18 328-345 40-57 (72)
228 1ijq_A LDL receptor, low-densi 30.0 2.7E+02 0.0091 24.0 22.3 197 100-345 37-247 (316)
229 3f3f_A Nucleoporin SEH1; struc 29.6 2.5E+02 0.0084 23.4 23.0 37 309-345 308-346 (351)
230 1vyh_C Platelet-activating fac 29.3 3.1E+02 0.01 24.4 21.7 192 104-339 161-371 (410)
231 2xe4_A Oligopeptidase B; hydro 29.2 4.3E+02 0.015 26.1 11.8 62 204-269 330-398 (751)
232 4ery_A WD repeat-containing pr 28.7 2.6E+02 0.0089 23.4 22.5 144 104-269 76-223 (312)
233 2be1_A Serine/threonine-protei 27.6 1.7E+02 0.0058 26.1 7.5 60 166-227 66-134 (339)
234 2xyi_A Probable histone-bindin 27.3 3.4E+02 0.012 24.3 11.6 70 249-338 192-264 (430)
235 3qqz_A Putative uncharacterize 27.1 2.9E+02 0.0098 23.4 14.8 62 204-270 38-101 (255)
236 3iz6_a 40S ribosomal protein R 25.8 3.4E+02 0.012 23.8 21.3 191 114-338 178-376 (380)
237 4h5i_A Guanine nucleotide-exch 25.4 3.4E+02 0.012 23.7 23.1 192 102-338 142-344 (365)
238 2ynn_A Coatomer subunit beta'; 25.3 3E+02 0.01 23.1 14.6 95 213-338 34-129 (304)
239 2pm7_B Protein transport prote 25.1 3E+02 0.01 23.0 21.8 208 105-344 67-293 (297)
240 1xfd_A DIP, dipeptidyl aminope 24.8 4.7E+02 0.016 25.1 17.5 106 114-227 35-147 (723)
241 3hxj_A Pyrrolo-quinoline quino 24.5 3.1E+02 0.011 23.0 10.3 29 204-233 147-175 (330)
242 2pbi_B Guanine nucleotide-bind 23.6 3.6E+02 0.012 23.3 20.5 138 114-269 174-315 (354)
243 2ynn_A Coatomer subunit beta'; 23.1 3.3E+02 0.011 22.8 18.2 137 166-339 34-174 (304)
244 2qe8_A Uncharacterized protein 22.9 3.7E+02 0.013 23.2 9.2 33 312-344 124-161 (343)
245 3ott_A Two-component system se 22.1 5.6E+02 0.019 25.1 11.9 55 167-230 82-136 (758)
246 2oiz_A Aromatic amine dehydrog 21.6 4.1E+02 0.014 23.2 10.2 30 313-342 113-145 (361)
247 3kya_A Putative phosphatase; s 21.5 5E+02 0.017 24.5 9.8 107 204-336 151-277 (496)
248 2w18_A PALB2, fancn, partner a 20.5 1.3E+02 0.0044 27.2 5.2 33 250-298 53-85 (356)
249 1k32_A Tricorn protease; prote 20.2 7.1E+02 0.024 25.5 19.4 74 102-181 387-466 (1045)
250 2kwv_A RAD30 homolog B, DNA po 20.1 43 0.0015 20.3 1.3 15 5-19 23-37 (48)
No 1
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.25 E-value=1.6e-09 Score=99.28 Aligned_cols=183 Identities=11% Similarity=0.120 Sum_probs=121.2
Q ss_pred EEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC-----CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 118 YYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR-----MDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 118 ~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~-----~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
++++||.|++|..+|+++.... .++.+.. +-+|+.++... ....+++|+..+++|+.....+.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~--~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~----- 147 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARC--LFGLGEV-----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI----- 147 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBC--SCEEEEE-----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-----
T ss_pred EEEEeCCCCcEEECCCCCcccc--ccceEEE-----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-----
Confidence 8899999999999998774332 2233221 12455555432 23569999999999999874322
Q ss_pred eeeccceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEE-eCCCCCCCCCCceeEEeeCCeEEEEEE-CCC--e
Q 043460 193 SFYVLQSVYSRGGILYNLTY-------RSTILRYNIEALSEAEII-EVPDKNNHPCDSEVIGLCKGALNYASR-NQS--T 261 (368)
Q Consensus 193 ~~~~~~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~-~lP~~~~~~~~~~~l~~~~G~L~~~~~-~~~--~ 261 (368)
......++.+ +|.||.+++ ...+.+||+.+.+|+ .+ ++|.... ...++..+|+|++++. +.. .
T Consensus 148 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~ 221 (318)
T 2woz_A 148 KVYGHNVISH-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK-DLAPMKTPRS----MFGVAIHKGKIVIAGGVTEDGLS 221 (318)
T ss_dssp CEESCEEEEE-TTEEEEECCEESSSCBCCCEEEEETTTTEEE-EECCCSSCCB----SCEEEEETTEEEEEEEEETTEEE
T ss_pred cccccEEEEE-CCEEEEEcCCCCCCCccceEEEEcCCCCEEE-ECCCCCCCcc----cceEEEECCEEEEEcCcCCCCcc
Confidence 2233456778 999999986 246999999999999 54 4554332 2356678999999987 222 3
Q ss_pred EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-e--------------
Q 043460 262 LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-S-------------- 326 (368)
Q Consensus 262 ~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~-------------- 326 (368)
-.+|.++-.++ +|+.+..++..... .. ..+. + +.||+. .
T Consensus 222 ~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~-~-~~i~v~GG~~~~~~~~~~~~~~ 275 (318)
T 2woz_A 222 ASVEAFDLKTN---------------KWEVMTEFPQERSS--------IS-LVSL-A-GSLYAIGGFAMIQLESKEFAPT 275 (318)
T ss_dssp EEEEEEETTTC---------------CEEECCCCSSCCBS--------CE-EEEE-T-TEEEEECCBCCBC----CCBCC
T ss_pred ceEEEEECCCC---------------eEEECCCCCCcccc--------eE-EEEE-C-CEEEEECCeeccCCCCceeccc
Confidence 46788877666 89998766532111 11 1122 2 344444 1
Q ss_pred -CCeEEEEECCCCeEEEec
Q 043460 327 -CDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 327 -~~~~~~ydl~t~~~~~v~ 344 (368)
...++.||+++++|+++.
T Consensus 276 ~~~~v~~yd~~~~~W~~~~ 294 (318)
T 2woz_A 276 EVNDIWKYEDDKKEWAGML 294 (318)
T ss_dssp BCCCEEEEETTTTEEEEEE
T ss_pred eeeeEEEEeCCCCEehhhc
Confidence 256999999999999983
No 2
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.24 E-value=7.6e-10 Score=100.79 Aligned_cols=199 Identities=10% Similarity=0.056 Sum_probs=129.3
Q ss_pred CCcEEEEeec---CCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC----CCcEEEEEeCC
Q 043460 103 CNGLILLGSS---LSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR----MDPEVDIFSSE 175 (368)
Q Consensus 103 ~~Glll~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~----~~~~~~vyss~ 175 (368)
.+|.|++... .....+.++||.|++|..+|+++..... ++.... +-+++.++... ....+++|+..
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS--LAACAA-----EGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS--CEEEEE-----TTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc--eeEEEE-----CCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 3555544432 1346789999999999999887643321 222211 12455555432 34579999999
Q ss_pred CCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe----------CCeEEEEEcCCCeEEEEE-eCCCCCCCCCCcee
Q 043460 176 NKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----------RSTILRYNIEALSEAEII-EVPDKNNHPCDSEV 244 (368)
Q Consensus 176 ~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----------~~~il~fD~~~~~~~~~~-~lP~~~~~~~~~~~ 244 (368)
+++|+.....+. ......++.+ +|.+|.+++ ...+.+||+.+.+|+ .+ ++|.... ...
T Consensus 127 ~~~W~~~~~~p~-----~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~----~~~ 195 (306)
T 3ii7_A 127 TESWHTKPSMLT-----QRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT-ELCPMIEARK----NHG 195 (306)
T ss_dssp TTEEEEECCCSS-----CCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEE-EECCCSSCCB----SCE
T ss_pred CCceEeCCCCcC-----CcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEE-ECCCccchhh----cce
Confidence 999999864322 2233446788 999999986 245899999999999 55 4554332 336
Q ss_pred EEeeCCeEEEEEEC-CC--eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCE
Q 043460 245 IGLCKGALNYASRN-QS--TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDI 321 (368)
Q Consensus 245 l~~~~G~L~~~~~~-~~--~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
++..+|+|++++.. .. .-.+|.++-..+ +|+.+..++..... .. ..+. ++.
T Consensus 196 ~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~ 249 (306)
T 3ii7_A 196 LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN---------------EWKMVSPMPWKGVT--------VK-CAAV--GSI 249 (306)
T ss_dssp EEEETTEEEEECCEETTEEBCCEEEEETTTT---------------EEEECCCCSCCBSC--------CE-EEEE--TTE
T ss_pred EEEECCEEEEEeCCCCCCCCceEEEeeCCCC---------------cEEECCCCCCCccc--------ee-EEEE--CCE
Confidence 67779999999762 21 235777777656 89998765532211 11 1222 344
Q ss_pred EEEee-------CCeEEEEECCCCeEEEecc
Q 043460 322 IFLGS-------CDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 322 v~~~~-------~~~~~~ydl~t~~~~~v~~ 345 (368)
||+.. ...+..||+++++|+.+..
T Consensus 250 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 280 (306)
T 3ii7_A 250 VYVLAGFQGVGRLGHILEYNTETDKWVANSK 280 (306)
T ss_dssp EEEEECBCSSSBCCEEEEEETTTTEEEEEEE
T ss_pred EEEEeCcCCCeeeeeEEEEcCCCCeEEeCCC
Confidence 55542 2579999999999999876
No 3
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.23 E-value=1.3e-09 Score=98.96 Aligned_cols=186 Identities=13% Similarity=0.143 Sum_probs=122.7
Q ss_pred eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
..++++||.|++|..+|+++..... ++.+.- +-+++.++... ....+++|+..+++|+.......
T Consensus 77 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~----- 144 (302)
T 2xn4_A 77 RTVDSYDPVKDQWTSVANMRDRRST--LGAAVL-----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT----- 144 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBS--CEEEEE-----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS-----
T ss_pred cceEEECCCCCceeeCCCCCccccc--eEEEEE-----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC-----
Confidence 5689999999999999987743322 222211 11455555433 23479999999999999874322
Q ss_pred eeeccceEEEeCCeEEEEEe--------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC-C--e
Q 043460 193 SFYVLQSVYSRGGILYNLTY--------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ-S--T 261 (368)
Q Consensus 193 ~~~~~~~v~~~~G~lywl~~--------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~-~--~ 261 (368)
......++.+ +|.+|.+++ ...+.+||+.+.+|+..-++|.... ...++..+|+|+++.... . .
T Consensus 145 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~ 219 (302)
T 2xn4_A 145 RRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS----GAGVGVLNNLLYAVGGHDGPLVR 219 (302)
T ss_dssp CCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB----SCEEEEETTEEEEECCBSSSSBC
T ss_pred cccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc----cccEEEECCEEEEECCCCCCccc
Confidence 1123446778 999999976 2469999999999993334554332 236677899999998732 1 2
Q ss_pred EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEE
Q 043460 262 LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYH 334 (368)
Q Consensus 262 ~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~yd 334 (368)
-.+|.++-..+ .|+.+..++..... .. ..+. ++.||+.. ...+.+||
T Consensus 220 ~~~~~yd~~~~---------------~W~~~~~~~~~r~~--------~~-~~~~--~~~i~v~GG~~~~~~~~~v~~yd 273 (302)
T 2xn4_A 220 KSVEVYDPTTN---------------AWRQVADMNMCRRN--------AG-VCAV--NGLLYVVGGDDGSCNLASVEYYN 273 (302)
T ss_dssp CCEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE--TTEEEEECCBCSSSBCCCEEEEE
T ss_pred ceEEEEeCCCC---------------CEeeCCCCCCcccc--------Ce-EEEE--CCEEEEECCcCCCcccccEEEEc
Confidence 36788777656 89998765532111 11 1222 34455541 24699999
Q ss_pred CCCCeEEEec
Q 043460 335 LKTNKMELFS 344 (368)
Q Consensus 335 l~t~~~~~v~ 344 (368)
+++++|+.+.
T Consensus 274 ~~~~~W~~~~ 283 (302)
T 2xn4_A 274 PTTDKWTVVS 283 (302)
T ss_dssp TTTTEEEECS
T ss_pred CCCCeEEECC
Confidence 9999999997
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.23 E-value=2.1e-09 Score=97.56 Aligned_cols=188 Identities=8% Similarity=0.017 Sum_probs=124.1
Q ss_pred CeeEEEEcccCcc---ceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCC
Q 043460 115 KHRYYVCNPLTKQ---CVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKP 188 (368)
Q Consensus 115 ~~~~~v~NP~T~~---~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~ 188 (368)
...++++||.|++ |..+|+++.... .++.+.. +-+++.++... ....+++|+..+++|+..+..+.
T Consensus 77 ~~~~~~~d~~~~~~~~W~~~~~~p~~r~--~~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~- 148 (301)
T 2vpj_A 77 LSSVECLDYTADEDGVWYSVAPMNVRRG--LAGATTL-----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT- 148 (301)
T ss_dssp CCCEEEEETTCCTTCCCEEECCCSSCCB--SCEEEEE-----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-
T ss_pred CceEEEEECCCCCCCeeEECCCCCCCcc--ceeEEEE-----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-
Confidence 3568999999999 999988774332 2222221 12455555433 24579999999999999874322
Q ss_pred CCceeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC-C-
Q 043460 189 RRPVSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ-S- 260 (368)
Q Consensus 189 ~~p~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~-~- 260 (368)
......++.+ +|.+|.+++ ...+.+||+.+.+|+..-++|.... ...++..+++|+++.... .
T Consensus 149 ----~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~----~~~~~~~~~~i~v~GG~~~~~ 219 (301)
T 2vpj_A 149 ----AREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS----GAGVALLNDHIYVVGGFDGTA 219 (301)
T ss_dssp ----CCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB----SCEEEEETTEEEEECCBCSSS
T ss_pred ----CcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc----cceEEEECCEEEEEeCCCCCc
Confidence 1123446788 999999986 3679999999999993334554332 335667799999998732 1
Q ss_pred -eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC-------CeEEE
Q 043460 261 -TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC-------DMIYR 332 (368)
Q Consensus 261 -~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~ 332 (368)
.-.+|.++-.++ +|+.+..++..... .. ..+. + +.||+..+ ..+..
T Consensus 220 ~~~~v~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~-~-~~i~v~GG~~~~~~~~~v~~ 273 (301)
T 2vpj_A 220 HLSSVEAYNIRTD---------------SWTTVTSMTTPRCY--------VG-ATVL-R-GRLYAIAGYDGNSLLSSIEC 273 (301)
T ss_dssp BCCCEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE-T-TEEEEECCBCSSSBEEEEEE
T ss_pred ccceEEEEeCCCC---------------cEEECCCCCCcccc--------ee-EEEE-C-CEEEEEcCcCCCcccccEEE
Confidence 346777776656 89998765532211 11 1222 3 44555421 46899
Q ss_pred EECCCCeEEEecc
Q 043460 333 YHLKTNKMELFST 345 (368)
Q Consensus 333 ydl~t~~~~~v~~ 345 (368)
||+++++|+.+..
T Consensus 274 yd~~~~~W~~~~~ 286 (301)
T 2vpj_A 274 YDPIIDSWEVVTS 286 (301)
T ss_dssp EETTTTEEEEEEE
T ss_pred EcCCCCeEEEcCC
Confidence 9999999999876
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.21 E-value=2.7e-09 Score=97.67 Aligned_cols=186 Identities=10% Similarity=0.041 Sum_probs=122.4
Q ss_pred eEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC------CCcEEEEEeCCCCCceeccccCCCCC
Q 043460 117 RYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR------MDPEVDIFSSENKTWITRKVSVKPRR 190 (368)
Q Consensus 117 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~------~~~~~~vyss~~~~W~~~~~~~~~~~ 190 (368)
.++++||.|++|..+|+++..... ++.+.. +-+|+.++... ....+++|+..+++|+.....+.
T Consensus 68 ~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--- 137 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLPSPRCL--FGLGEA-----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--- 137 (315)
T ss_dssp EEEEEETTTTEEEECCCBSSCEES--CEEEEE-----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS---
T ss_pred ceEEecCCCCeEEECCCCCcchhc--eeEEEE-----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC---
Confidence 488999999999999987743321 222211 11455554421 34579999999999999874322
Q ss_pred ceeeeccceEEEeCCeEEEEEeC-------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC-CC--
Q 043460 191 PVSFYVLQSVYSRGGILYNLTYR-------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN-QS-- 260 (368)
Q Consensus 191 p~~~~~~~~v~~~~G~lywl~~~-------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~-~~-- 260 (368)
......++.+ +|.||.+++. ..+.+||+.+.+|+..-++|.... ...++..+|+|++++.. ..
T Consensus 138 --~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~ 210 (315)
T 4asc_A 138 --VVYGHTVLSH-MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS----LFGATVHDGRIIVAAGVTDTGL 210 (315)
T ss_dssp --CCBSCEEEEE-TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB----SCEEEEETTEEEEEEEECSSSE
T ss_pred --cccceeEEEE-CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh----ceEEEEECCEEEEEeccCCCCc
Confidence 2233446778 9999999872 579999999999993334554322 33566789999999872 22
Q ss_pred eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-e-------------
Q 043460 261 TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-S------------- 326 (368)
Q Consensus 261 ~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~------------- 326 (368)
.-.+|+++-.++ +|+.+..++.+... .. ..+. ++.||+. .
T Consensus 211 ~~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~l~v~GG~~~~~~~~~~~~~ 264 (315)
T 4asc_A 211 TSSAEVYSITDN---------------KWAPFEAFPQERSS--------LS-LVSL--VGTLYAIGGFATLETESGELVP 264 (315)
T ss_dssp EEEEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE--TTEEEEEEEEEEEECTTSCEEE
T ss_pred cceEEEEECCCC---------------eEEECCCCCCcccc--------ee-EEEE--CCEEEEECCccccCcCCccccc
Confidence 347888887666 89998765522211 11 1122 2344443 1
Q ss_pred --CCeEEEEECCCCeEEEecc
Q 043460 327 --CDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 327 --~~~~~~ydl~t~~~~~v~~ 345 (368)
...+.+||+++++|+++..
T Consensus 265 ~~~~~v~~yd~~~~~W~~~~~ 285 (315)
T 4asc_A 265 TELNDIWRYNEEEKKWEGVLR 285 (315)
T ss_dssp EEEEEEEEEETTTTEEEEEES
T ss_pred cccCcEEEecCCCChhhhhcc
Confidence 1358999999999999854
No 6
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.18 E-value=3.9e-09 Score=96.32 Aligned_cols=187 Identities=11% Similarity=0.067 Sum_probs=123.2
Q ss_pred eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
..++++||.|++|..+|+++.... .++.+.- +-+|+.++... ....+++|+..+++|+.....+.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~--~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~----- 157 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRN--RIGVGVI-----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT----- 157 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCB--TCEEEEE-----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-----
T ss_pred ceEEEECCCCCeEeECCCCCcCcc--ccEEEEE-----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-----
Confidence 468999999999999998774332 1222211 11455554432 24579999999999999874322
Q ss_pred eeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC---CeEE
Q 043460 193 SFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ---STLL 263 (368)
Q Consensus 193 ~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~~ 263 (368)
......++.+ +|.||.+++ ...+..||+.+.+|+..-++|.... ...++..+++|+++.... ..-.
T Consensus 158 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~~ 232 (308)
T 1zgk_A 158 RRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS----GAGVCVLHNCIYAAGGYDGQDQLNS 232 (308)
T ss_dssp CCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB----SCEEEEETTEEEEECCBCSSSBCCC
T ss_pred cccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc----cceEEEECCEEEEEeCCCCCCccce
Confidence 2123446888 999999986 3579999999999993334444322 235667799999998732 2346
Q ss_pred EEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-------eCCeEEEEECC
Q 043460 264 IWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-------SCDMIYRYHLK 336 (368)
Q Consensus 264 IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~~~~~~ydl~ 336 (368)
+|+++-..+ +|+.+..++..... .. ..+. ++.||+. ....+..||++
T Consensus 233 v~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 233 VERYDVETE---------------TWTFVAPMKHRRSA--------LG-ITVH--QGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp EEEEETTTT---------------EEEECCCCSSCCBS--------CE-EEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred EEEEeCCCC---------------cEEECCCCCCCccc--------eE-EEEE--CCEEEEEcCcCCCcccceEEEEcCC
Confidence 777777656 89998755522211 11 1122 3445554 13579999999
Q ss_pred CCeEEEecc
Q 043460 337 TNKMELFST 345 (368)
Q Consensus 337 t~~~~~v~~ 345 (368)
+++|+++..
T Consensus 287 ~~~W~~~~~ 295 (308)
T 1zgk_A 287 TDTWSEVTR 295 (308)
T ss_dssp TTEEEEEEE
T ss_pred CCEEeecCC
Confidence 999999876
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.16 E-value=8.9e-09 Score=93.66 Aligned_cols=188 Identities=13% Similarity=0.075 Sum_probs=124.3
Q ss_pred CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC--CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR--MDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~--~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
...+.++||.+++|..+++++..... ++.+.. +-+|+.++... ....+++|+..+++|+.....+.
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~-----~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~----- 90 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRD--AACVFW-----DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT----- 90 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBS--CEEEEE-----TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS-----
T ss_pred CceEEEecCCCCCEecCCCCCcccce--eEEEEE-----CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc-----
Confidence 45789999999999999887743322 222211 11355554432 34679999999999999874322
Q ss_pred eeeccceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC---CC--
Q 043460 193 SFYVLQSVYSRGGILYNLTY-------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN---QS-- 260 (368)
Q Consensus 193 ~~~~~~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~---~~-- 260 (368)
......++.+ +|.||.+++ ...+.+||+.+.+|+..-++|.... ...++..+|+|+++... ..
T Consensus 91 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 91 PRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC----SHGMVEANGLIYVCGGSLGNNVSG 165 (306)
T ss_dssp CCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB----SCEEEEETTEEEEECCEESCTTTC
T ss_pred cccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc----eeEEEEECCEEEEECCCCCCCCcc
Confidence 1123446788 999999986 2569999999999993334554432 33566789999999861 11
Q ss_pred --eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-------eCCeEE
Q 043460 261 --TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-------SCDMIY 331 (368)
Q Consensus 261 --~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~~~~~ 331 (368)
.-.+|.++-..+ +|+.+..++..... .. ..+. ++.||+. ....+.
T Consensus 166 ~~~~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~i~v~GG~~~~~~~~~~~ 219 (306)
T 3ii7_A 166 RVLNSCEVYDPATE---------------TWTELCPMIEARKN--------HG-LVFV--KDKIFAVGGQNGLGGLDNVE 219 (306)
T ss_dssp EECCCEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE--TTEEEEECCEETTEEBCCEE
T ss_pred cccceEEEeCCCCC---------------eEEECCCccchhhc--------ce-EEEE--CCEEEEEeCCCCCCCCceEE
Confidence 346777777666 89998755432111 11 1222 3445554 135799
Q ss_pred EEECCCCeEEEecc
Q 043460 332 RYHLKTNKMELFST 345 (368)
Q Consensus 332 ~ydl~t~~~~~v~~ 345 (368)
+||+++++|+.+..
T Consensus 220 ~yd~~~~~W~~~~~ 233 (306)
T 3ii7_A 220 YYDIKLNEWKMVSP 233 (306)
T ss_dssp EEETTTTEEEECCC
T ss_pred EeeCCCCcEEECCC
Confidence 99999999999976
No 8
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.12 E-value=6e-09 Score=95.04 Aligned_cols=189 Identities=10% Similarity=0.055 Sum_probs=123.6
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEe----C---CCcEEEEEeCCCCCceeccccC
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRA----R---MDPEVDIFSSENKTWITRKVSV 186 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~----~---~~~~~~vyss~~~~W~~~~~~~ 186 (368)
....+.++||.|++|..+|+++..... ++.... +-+|+.++.. . ....+++|+..+++|+....+.
T Consensus 37 ~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p 109 (308)
T 1zgk_A 37 SLSYLEAYNPSNGTWLRLADLQVPRSG--LAGCVV-----GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 109 (308)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBS--CEEEEE-----TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCS
T ss_pred CcceEEEEcCCCCeEeECCCCCccccc--ceEEEE-----CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCC
Confidence 345789999999999999877643321 222211 1245544432 1 2356899999999999987432
Q ss_pred CCCCceeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC-
Q 043460 187 KPRRPVSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ- 259 (368)
Q Consensus 187 ~~~~p~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~- 259 (368)
. ......++.+ +|.||.+++ ...+.+||+.+.+|+..-++|.... ...++..+++|+++....
T Consensus 110 ~-----~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~ 179 (308)
T 1zgk_A 110 V-----PRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRI----GVGVAVLNRLLYAVGGFDG 179 (308)
T ss_dssp S-----CCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCB----SCEEEEETTEEEEECCBCS
T ss_pred c-----CccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcccc----ceEEEEECCEEEEEeCCCC
Confidence 2 1123446788 999999976 3579999999999993334554432 235567799999998722
Q ss_pred --CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeE
Q 043460 260 --STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMI 330 (368)
Q Consensus 260 --~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~ 330 (368)
..-.+|.++-..+ +|+.+..++..... .. ..+. ++.||+.. ...+
T Consensus 180 ~~~~~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~iyv~GG~~~~~~~~~v 233 (308)
T 1zgk_A 180 TNRLNSAECYYPERN---------------EWRMITAMNTIRSG--------AG-VCVL--HNCIYAAGGYDGQDQLNSV 233 (308)
T ss_dssp SCBCCCEEEEETTTT---------------EEEECCCCSSCCBS--------CE-EEEE--TTEEEEECCBCSSSBCCCE
T ss_pred CCcCceEEEEeCCCC---------------eEeeCCCCCCcccc--------ce-EEEE--CCEEEEEeCCCCCCccceE
Confidence 1235677776656 89988665532111 11 1222 34455552 3679
Q ss_pred EEEECCCCeEEEecc
Q 043460 331 YRYHLKTNKMELFST 345 (368)
Q Consensus 331 ~~ydl~t~~~~~v~~ 345 (368)
.+||+++++|+++..
T Consensus 234 ~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 234 ERYDVETETWTFVAP 248 (308)
T ss_dssp EEEETTTTEEEECCC
T ss_pred EEEeCCCCcEEECCC
Confidence 999999999999876
No 9
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.11 E-value=2.3e-08 Score=90.56 Aligned_cols=188 Identities=11% Similarity=0.109 Sum_probs=124.0
Q ss_pred CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCC---ceeccccCCC
Q 043460 115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKT---WITRKVSVKP 188 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~---W~~~~~~~~~ 188 (368)
...++++||.|++|..+|+++.... .++.... +-+|+.++... ....+++|+..+++ |+.....+.
T Consensus 30 ~~~~~~~d~~~~~W~~~~~~p~~r~--~~~~~~~-----~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~- 101 (301)
T 2vpj_A 30 IDVVEKYDPKTQEWSFLPSITRKRR--YVASVSL-----HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV- 101 (301)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCB--SCEEEEE-----TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS-
T ss_pred eeEEEEEcCCCCeEEeCCCCChhhc--cccEEEE-----CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC-
Confidence 3478999999999999987764222 1222211 12455555432 24579999999999 999864322
Q ss_pred CCceeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC---
Q 043460 189 RRPVSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ--- 259 (368)
Q Consensus 189 ~~p~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~--- 259 (368)
......++.+ +|.+|.+++ ...+.+||+.+.+|+..-++|.... ...++..+|+|++++...
T Consensus 102 ----~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~ 172 (301)
T 2vpj_A 102 ----RRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTARE----GAGLVVASGVIYCLGGYDGLN 172 (301)
T ss_dssp ----CCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCB----SCEEEEETTEEEEECCBCSSC
T ss_pred ----CccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcc----cceEEEECCEEEEECCCCCCc
Confidence 2133446788 999999986 3579999999999994445664432 235667799999998722
Q ss_pred CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEE
Q 043460 260 STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYR 332 (368)
Q Consensus 260 ~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~ 332 (368)
..-.+|.++-..+ .|+.+..++.+... .. .... ++.||+.. ...+..
T Consensus 173 ~~~~~~~~d~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~i~v~GG~~~~~~~~~v~~ 226 (301)
T 2vpj_A 173 ILNSVEKYDPHTG---------------HWTNVTPMATKRSG--------AG-VALL--NDHIYVVGGFDGTAHLSSVEA 226 (301)
T ss_dssp BCCCEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE--TTEEEEECCBCSSSBCCCEEE
T ss_pred ccceEEEEeCCCC---------------cEEeCCCCCccccc--------ce-EEEE--CCEEEEEeCCCCCcccceEEE
Confidence 1345777776656 89998655422111 11 1222 34455541 357999
Q ss_pred EECCCCeEEEecc
Q 043460 333 YHLKTNKMELFST 345 (368)
Q Consensus 333 ydl~t~~~~~v~~ 345 (368)
||+++++|+.+..
T Consensus 227 yd~~~~~W~~~~~ 239 (301)
T 2vpj_A 227 YNIRTDSWTTVTS 239 (301)
T ss_dssp EETTTTEEEEECC
T ss_pred EeCCCCcEEECCC
Confidence 9999999999976
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.09 E-value=2.5e-08 Score=90.44 Aligned_cols=187 Identities=11% Similarity=0.129 Sum_probs=122.7
Q ss_pred eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
..+.++||.+++|..+++++..... ++.... +-+|+.++... ....+++|+..+++|+..+.+..
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~----- 97 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCR--AGMVYM-----AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD----- 97 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBS--CEEEEE-----TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS-----
T ss_pred CcEEEEcCcCCcEeEcccCCccccc--ceEEEE-----CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc-----
Confidence 4688999999999999877643321 222211 12455554432 23568999999999999874322
Q ss_pred eeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC--CC---e
Q 043460 193 SFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN--QS---T 261 (368)
Q Consensus 193 ~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~--~~---~ 261 (368)
......++.+ +|.+|.+++ ...+.+||+.+.+|+..-++|.... ...++..+|+|++++.. .. .
T Consensus 98 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 98 RRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRS----SVGVGVVGGLLYAVGGYDVASRQCL 172 (302)
T ss_dssp CCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCB----SCEEEEETTEEEEECCEETTTTEEC
T ss_pred cccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCccc----CceEEEECCEEEEEeCCCCCCCccc
Confidence 1123446788 999999987 1468999999999993334554322 33566789999999762 11 2
Q ss_pred EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEE
Q 043460 262 LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYH 334 (368)
Q Consensus 262 ~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~yd 334 (368)
-.+|..+-..+ +|+.+..++..... .. ..+. ++.||+.. ...+..||
T Consensus 173 ~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~iyv~GG~~~~~~~~~~~~yd 226 (302)
T 2xn4_A 173 STVECYNATTN---------------EWTYIAEMSTRRSG--------AG-VGVL--NNLLYAVGGHDGPLVRKSVEVYD 226 (302)
T ss_dssp CCEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE--TTEEEEECCBSSSSBCCCEEEEE
T ss_pred cEEEEEeCCCC---------------cEEECCCCcccccc--------cc-EEEE--CCEEEEECCCCCCcccceEEEEe
Confidence 35777776656 89998765522111 11 1222 34455541 35799999
Q ss_pred CCCCeEEEecc
Q 043460 335 LKTNKMELFST 345 (368)
Q Consensus 335 l~t~~~~~v~~ 345 (368)
+++++|+.+..
T Consensus 227 ~~~~~W~~~~~ 237 (302)
T 2xn4_A 227 PTTNAWRQVAD 237 (302)
T ss_dssp TTTTEEEEECC
T ss_pred CCCCCEeeCCC
Confidence 99999999876
No 11
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.02 E-value=4e-08 Score=91.31 Aligned_cols=203 Identities=12% Similarity=0.085 Sum_probs=123.6
Q ss_pred CcEEEEeecCCCeeEEEEccc--CccceecCCCC-cCCCCCCCeeEEcCCCCCCeEEEEEEEe-C-------CCcEEEEE
Q 043460 104 NGLILLGSSLSKHRYYVCNPL--TKQCVAIPKAR-EDVLASPPALAFHPCDSSHYKIIRFLRA-R-------MDPEVDIF 172 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~--T~~~~~lP~~~-~~~~~~~~~l~~d~~~~~~ykvv~~~~~-~-------~~~~~~vy 172 (368)
+|.|.+........++++||. +++|..+|+++ .... .++.+... -+|+.++.. . ....+++|
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~--~~~~~~~~-----~~lyv~GG~~~~~~~~~~~~~~v~~y 91 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRD--QATSAFID-----GNLYVFGGIGKNSEGLTQVFNDVHKY 91 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCB--SCEEEEET-----TEEEEECCEEECTTSCEEECCCEEEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCc--cceEEEEC-----CEEEEEcCCCCCCCccceeeccEEEE
Confidence 666655544344579999998 59999998876 3222 12222111 145555443 1 24579999
Q ss_pred eCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeC---------------------------------------
Q 043460 173 SSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR--------------------------------------- 213 (368)
Q Consensus 173 ss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~--------------------------------------- 213 (368)
+..+++|+....+. |.......++.+ +|.||.+++.
T Consensus 92 d~~~~~W~~~~~~~----p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 2uvk_A 92 NPKTNSWVKLMSHA----PMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFF 166 (357)
T ss_dssp ETTTTEEEECSCCC----SSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCC
T ss_pred eCCCCcEEECCCCC----CcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCC
Confidence 99999999988543 122223345668 9999999871
Q ss_pred -CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC--C--CeEEEEEEcc--CCCCCCCCCCccCCCCC
Q 043460 214 -STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN--Q--STLLIWQLDD--HRHHSNSHGSNKAASGA 286 (368)
Q Consensus 214 -~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~--~--~~~~IW~l~~--~~~~~~~~~~~~~~~~~ 286 (368)
..+.+||+.+.+|+..-++|..... ...++..+++|++++.. . ..-.+|.++- ...
T Consensus 167 ~~~v~~yd~~~~~W~~~~~~p~~~~~---~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~-------------- 229 (357)
T 2uvk_A 167 NKFLLSFDPSTQQWSYAGESPWYGTA---GAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL-------------- 229 (357)
T ss_dssp CCEEEEEETTTTEEEEEEECSSCCCB---SCEEEEETTEEEEECCEEETTEECCCEEEEECC---C--------------
T ss_pred cccEEEEeCCCCcEEECCCCCCCCcc---cccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC--------------
Confidence 5899999999999944456643322 23667789999999762 1 1345666653 345
Q ss_pred CceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC------------------------CeEEEEECCCCeEEE
Q 043460 287 RSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC------------------------DMIYRYHLKTNKMEL 342 (368)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------------------------~~~~~ydl~t~~~~~ 342 (368)
.|+.+..++.+.-.. . .-..+. ++.||+..+ ..+.+||+++++|++
T Consensus 230 -~W~~~~~~~~~~~~~------~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~ 299 (357)
T 2uvk_A 230 -KWNKLAPVSSPDGVA------G-GFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK 299 (357)
T ss_dssp -EEEECCCSSTTTCCB------S-CEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE
T ss_pred -cEEecCCCCCCcccc------c-ceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee
Confidence 899987664221110 0 111222 344555521 258899999999999
Q ss_pred ecc
Q 043460 343 FST 345 (368)
Q Consensus 343 v~~ 345 (368)
+..
T Consensus 300 ~~~ 302 (357)
T 2uvk_A 300 SGE 302 (357)
T ss_dssp EEE
T ss_pred CCC
Confidence 876
No 12
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.99 E-value=3.6e-10 Score=74.71 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460 4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI 42 (368)
Q Consensus 4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f 42 (368)
..||+|++.+||++||+++++++++|||+|+.++.++.|
T Consensus 10 ~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~l 48 (53)
T 1fs1_A 10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (53)
T ss_dssp CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred HHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Confidence 479999999999999999999999999999999998765
No 13
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=98.93 E-value=1.4e-07 Score=86.06 Aligned_cols=188 Identities=10% Similarity=0.078 Sum_probs=117.8
Q ss_pred eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEe-----C----CCcEEEEEeCCCCCceeccccC
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRA-----R----MDPEVDIFSSENKTWITRKVSV 186 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~-----~----~~~~~~vyss~~~~W~~~~~~~ 186 (368)
..+.++||.|++|.. ++.+.......++.+.. +-+|+.++.. . ....+++|+..+++|+..+..+
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p 86 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK-----ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLP 86 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT-----TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBS
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEEE-----CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCC
Confidence 578999999999986 33321111111222211 2234444432 1 1224889999999999886432
Q ss_pred CCCCceeeeccceEEEeCCeEEEEEe---------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEE
Q 043460 187 KPRRPVSFYVLQSVYSRGGILYNLTY---------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASR 257 (368)
Q Consensus 187 ~~~~p~~~~~~~~v~~~~G~lywl~~---------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~ 257 (368)
. .-.....+.+ +|.+|.+++ ...+.+||+.+.+|+..-++|.... ...++..+|+|++++.
T Consensus 87 ~-----~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG 156 (315)
T 4asc_A 87 S-----PRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVY----GHTVLSHMDLVYVIGG 156 (315)
T ss_dssp S-----CEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCB----SCEEEEETTEEEEECC
T ss_pred c-----chhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccc----ceeEEEECCEEEEEeC
Confidence 2 2133456888 999999986 1469999999999993334554432 3356678999999987
Q ss_pred C-CC---eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------
Q 043460 258 N-QS---TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS------- 326 (368)
Q Consensus 258 ~-~~---~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------- 326 (368)
. .. .-.+|.++-.++ +|+.+..++.+... .. ..+. ++.||+..
T Consensus 157 ~~~~~~~~~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~iyv~GG~~~~~~ 210 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKF---------------EWKELAPMQTARSL--------FG-ATVH--DGRIIVAAGVTDTGL 210 (315)
T ss_dssp BCTTSCBCCCEEEEETTTT---------------EEEECCCCSSCCBS--------CE-EEEE--TTEEEEEEEECSSSE
T ss_pred CCCCCcccceEEEEeCCCC---------------eEEECCCCCCchhc--------eE-EEEE--CCEEEEEeccCCCCc
Confidence 3 21 236788777656 89998765532111 11 1222 34455541
Q ss_pred CCeEEEEECCCCeEEEecc
Q 043460 327 CDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 327 ~~~~~~ydl~t~~~~~v~~ 345 (368)
...+.+||+++++|+.+..
T Consensus 211 ~~~~~~yd~~~~~W~~~~~ 229 (315)
T 4asc_A 211 TSSAEVYSITDNKWAPFEA 229 (315)
T ss_dssp EEEEEEEETTTTEEEEECC
T ss_pred cceEEEEECCCCeEEECCC
Confidence 2369999999999999976
No 14
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=98.89 E-value=1.6e-07 Score=85.76 Aligned_cols=187 Identities=12% Similarity=0.146 Sum_probs=116.0
Q ss_pred eEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---------CCcEEEEEeCCCCCceeccccCC
Q 043460 117 RYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---------MDPEVDIFSSENKTWITRKVSVK 187 (368)
Q Consensus 117 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---------~~~~~~vyss~~~~W~~~~~~~~ 187 (368)
...++||.|++|...|.+.... ...++.+. .+-+|+.++... ....+++|+..+++|+..+..+.
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~-r~~~~~~~-----~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~ 98 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIP-RNHSSIVT-----QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS 98 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSC-SSEEEEEC-----SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSS
T ss_pred ceEEECCCCCceecccCCccCC-ccceEEEE-----ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCc
Confidence 5789999999999843221111 11112221 122344444311 12248999999999999864322
Q ss_pred CCCceeeeccceEEEeCCeEEEEEeC--------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC-
Q 043460 188 PRRPVSFYVLQSVYSRGGILYNLTYR--------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN- 258 (368)
Q Consensus 188 ~~~p~~~~~~~~v~~~~G~lywl~~~--------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~- 258 (368)
.-.....+.+ +|.||.+++. ..+.+||+.+.+|+..-++|.... ...++..+|+|++++..
T Consensus 99 -----~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~ 168 (318)
T 2woz_A 99 -----ARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY----GHNVISHNGMIYCLGGKT 168 (318)
T ss_dssp -----CBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE----SCEEEEETTEEEEECCEE
T ss_pred -----cccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc----ccEEEEECCEEEEEcCCC
Confidence 1123446778 9999999872 468999999999993335554432 22556689999998862
Q ss_pred -C--CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CC
Q 043460 259 -Q--STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CD 328 (368)
Q Consensus 259 -~--~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~ 328 (368)
. ..-.+|.++-..+ +|+.+..++..... .. ..+. ++.||+.. ..
T Consensus 169 ~~~~~~~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~iyv~GG~~~~~~~~ 222 (318)
T 2woz_A 169 DDKKCTNRVFIYNPKKG---------------DWKDLAPMKTPRSM--------FG-VAIH--KGKIVIAGGVTEDGLSA 222 (318)
T ss_dssp SSSCBCCCEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE--TTEEEEEEEEETTEEEE
T ss_pred CCCCccceEEEEcCCCC---------------EEEECCCCCCCccc--------ce-EEEE--CCEEEEEcCcCCCCccc
Confidence 1 1235788877666 89998765422111 11 1222 34455541 24
Q ss_pred eEEEEECCCCeEEEecc
Q 043460 329 MIYRYHLKTNKMELFST 345 (368)
Q Consensus 329 ~~~~ydl~t~~~~~v~~ 345 (368)
.+.+||+++++|+++..
T Consensus 223 ~~~~yd~~~~~W~~~~~ 239 (318)
T 2woz_A 223 SVEAFDLKTNKWEVMTE 239 (318)
T ss_dssp EEEEEETTTCCEEECCC
T ss_pred eEEEEECCCCeEEECCC
Confidence 68899999999999876
No 15
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.86 E-value=9.1e-10 Score=98.73 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHcCCCchhhH-HHhhhhHHHHhhhcCCchhhhh
Q 043460 3 QIYLSEDLITEILSRLPVKSVV-GFKIVSKTWNNLISKVCIPRIL 46 (368)
Q Consensus 3 ~~~LP~Dll~~IL~rLp~~~l~-r~r~Vck~Wr~li~~~~f~~~~ 46 (368)
...||+|+|.+||+|||+++|+ ||++|||+|+.+++++.|.+++
T Consensus 51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~ 95 (297)
T 2e31_A 51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95 (297)
T ss_dssp TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence 4589999999999999999999 9999999999999999997776
No 16
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.73 E-value=8.1e-07 Score=82.41 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=112.7
Q ss_pred eeEEEEcccCccceecCCCC-cCCCCCCCeeEEcCCCCCCeEEEEEEEeC------------------------------
Q 043460 116 HRYYVCNPLTKQCVAIPKAR-EDVLASPPALAFHPCDSSHYKIIRFLRAR------------------------------ 164 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~-~~~~~~~~~l~~d~~~~~~ykvv~~~~~~------------------------------ 164 (368)
..++++||.|++|..+++++ ... ..++.... +-+|+.++...
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r--~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGM--AGHVTFVH-----NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD 158 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCC--SSEEEEEE-----TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred ccEEEEeCCCCcEEECCCCCCccc--ccceEEEE-----CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence 46899999999999998765 222 12222221 12566665432
Q ss_pred -------CCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-------CCeEEEEEc--CCCeEEE
Q 043460 165 -------MDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-------RSTILRYNI--EALSEAE 228 (368)
Q Consensus 165 -------~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-------~~~il~fD~--~~~~~~~ 228 (368)
....+++|+..+++|+.....+.+. .....++.+ +|.||.+++ ...+..||+ .+.+|+.
T Consensus 159 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~----~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~ 233 (357)
T 2uvk_A 159 KKAEDYFFNKFLLSFDPSTQQWSYAGESPWYG----TAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK 233 (357)
T ss_dssp SCGGGGCCCCEEEEEETTTTEEEEEEECSSCC----CBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEE
T ss_pred ccccccCCcccEEEEeCCCCcEEECCCCCCCC----cccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEe
Confidence 1258999999999999986432211 112446778 999999975 346778876 8899993
Q ss_pred EEeCCCCCCCCCCceeEEeeCCeEEEEEEC--C------------------CeEEEEEEccCCCCCCCCCCccCCCCCCc
Q 043460 229 IIEVPDKNNHPCDSEVIGLCKGALNYASRN--Q------------------STLLIWQLDDHRHHSNSHGSNKAASGARS 288 (368)
Q Consensus 229 ~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~--~------------------~~~~IW~l~~~~~~~~~~~~~~~~~~~~~ 288 (368)
+-.+|...... ...++..+|+|+++... . ..-.+|+.+-.++ +
T Consensus 234 ~~~~~~~~~~~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~---------------~ 296 (357)
T 2uvk_A 234 LAPVSSPDGVA--GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG---------------K 296 (357)
T ss_dssp CCCSSTTTCCB--SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC------------------
T ss_pred cCCCCCCcccc--cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC---------------c
Confidence 33444332221 33567889999999862 1 1135667666556 8
Q ss_pred eEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEECCCCeEEEec
Q 043460 289 WILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~ydl~t~~~~~v~ 344 (368)
|+++..++..... .. ++..++.++++.. ...++.|+++++||.+.-
T Consensus 297 W~~~~~~p~~r~~--------~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 297 WDKSGELSQGRAY--------GV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CEEEEECSSCCBS--------SE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eeeCCCCCCCccc--------ce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 9998776633221 01 1222334333331 246889999999986643
No 17
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.54 E-value=0.00034 Score=66.32 Aligned_cols=236 Identities=13% Similarity=0.103 Sum_probs=118.6
Q ss_pred CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCchhhhhcCCCCCce-Eeecc-C-CCC----CCeee-ccC---C
Q 043460 4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCG-FLFPS-T-QDS----IGYIS-YSD---N 72 (368)
Q Consensus 4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f~~~~~~~~~~~~-~~~~~-~-~~~----~~~~~-f~~---~ 72 (368)
..||+|++..||+.|++++|+++++|||+|+.++.++.+-+.+........ ..... . ... ..... +.. .
T Consensus 20 ~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~~~ 99 (445)
T 2ovr_B 20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRI 99 (445)
T ss_dssp TSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhhhh
Confidence 479999999999999999999999999999999998865443311000000 00000 0 000 00000 000 0
Q ss_pred CCCCCCCCcccccccccCCCCCCCcEEEecCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCC
Q 043460 73 EECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCD 151 (368)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~ 151 (368)
...+.... ......+. .+...-...+...+.+|+... ....+.|||..+++... ++... .....+.+++
T Consensus 100 ~~~w~~~~-~~~~~~l~-~h~~~v~~~~~~~g~~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~-- 169 (445)
T 2ovr_B 100 DTNWRRGE-LKSPKVLK-GHDDHVITCLQFCGNRIVSGS--DDNTLKVWSAVTGKCLRTLVGHT----GGVWSSQMRD-- 169 (445)
T ss_dssp HHHHHHSC-CCCCEEEE-CSTTSCEEEEEEETTEEEEEE--TTSCEEEEETTTCCEEEECCCCS----SCEEEEEEET--
T ss_pred hhcccCCC-cceeEEec-ccCCCcEEEEEEcCCEEEEEE--CCCcEEEEECCCCcEEEEEcCCC----CCEEEEEecC--
Confidence 00000000 00000000 001111233444455555554 67789999998887553 32111 1223344442
Q ss_pred CCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEE
Q 043460 152 SSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEII 230 (368)
Q Consensus 152 ~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~ 230 (368)
. .+.... ....+.+++..++.-...-.... ..-.++.. ++.....+. ++.|..+|+.+.+....+
T Consensus 170 --~--~l~s~~--~dg~i~vwd~~~~~~~~~~~~h~-------~~v~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 170 --N--IIISGS--TDRTLKVWNAETGECIHTLYGHT-------STVRCMHL-HEKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp --T--EEEEEE--TTSCEEEEETTTTEEEEEECCCS-------SCEEEEEE-ETTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred --C--EEEEEe--CCCeEEEEECCcCcEEEEECCCC-------CcEEEEEe-cCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 2 222222 34578889888774322111000 00114555 444333333 788999999987654233
Q ss_pred eCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEcc
Q 043460 231 EVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 231 ~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
..... .......+|...++...+..+.+|-+..
T Consensus 236 ~~~~~------~v~~~~~~~~~l~~~~~dg~i~iwd~~~ 268 (445)
T 2ovr_B 236 MGHVA------AVRCVQYDGRRVVSGAYDFMVKVWDPET 268 (445)
T ss_dssp ECCSS------CEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred cCCcc------cEEEEEECCCEEEEEcCCCEEEEEECCC
Confidence 32211 1122233777777777788899997765
No 18
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.53 E-value=0.00018 Score=68.43 Aligned_cols=290 Identities=11% Similarity=0.085 Sum_probs=138.9
Q ss_pred CCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcC-Cchhhhhc-C-----CCCCceE--eeccCCCCCC----e-eecc
Q 043460 5 YLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISK-VCIPRILR-A-----PSPLCGF--LFPSTQDSIG----Y-ISYS 70 (368)
Q Consensus 5 ~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~-~~f~~~~~-~-----~~~~~~~--~~~~~~~~~~----~-~~f~ 70 (368)
.||+|++.+||+.||+++|++++.|||+|+.++.+ +.+-+++. + +...... -......... . ..+.
T Consensus 17 ~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (464)
T 3v7d_B 17 SLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFL 96 (464)
T ss_dssp HSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchhhHHHHH
Confidence 59999999999999999999999999999999998 54322220 0 1000000 0000000000 0 0000
Q ss_pred CC---CCCCCCCCcccccccccCCCCCCCcEEEecCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeE
Q 043460 71 DN---EECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALA 146 (368)
Q Consensus 71 ~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~ 146 (368)
.. ...+...........+. .....-...+...+++|+... ....+.+||..+++... +... ......+.
T Consensus 97 ~~~~~~~~w~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~l~sgs--~dg~i~vwd~~~~~~~~~~~~h----~~~V~~l~ 169 (464)
T 3v7d_B 97 ENIFILKNWYNPKFVPQRTTLR-GHMTSVITCLQFEDNYVITGA--DDKMIRVYDSINKKFLLQLSGH----DGGVWALK 169 (464)
T ss_dssp HHHHHHHHHHCTTCCCEEEEEE-CCSSSCEEEEEEETTEEEEEE--TTSCEEEEETTTTEEEEEECCC----SSCEEEEE
T ss_pred HhhhhHhhhcCCCcCcceEEEc-CCCCCcEEEEEECCCEEEEEc--CCCcEEEEECCCCcEEEEEeCC----CcCEEEEE
Confidence 00 00000000000001111 101111233444456655554 67789999988877543 2211 12334455
Q ss_pred EcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEe---CCeEEEEEe-CCeEEEEEcC
Q 043460 147 FHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSR---GGILYNLTY-RSTILRYNIE 222 (368)
Q Consensus 147 ~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~---~G~lywl~~-~~~il~fD~~ 222 (368)
+.+. . .++... ....+.+++.+++.-...-..... +. .++.+. +|.....+. ++.|..+|+.
T Consensus 170 ~~~~---~-~l~s~s---~dg~i~vwd~~~~~~~~~~~~h~~--~v-----~~l~~~~~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 170 YAHG---G-ILVSGS---TDRTVRVWDIKKGCCTHVFEGHNS--TV-----RCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp ECST---T-EEEEEE---TTSCEEEEETTTTEEEEEECCCSS--CE-----EEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred EcCC---C-EEEEEe---CCCCEEEEECCCCcEEEEECCCCC--cc-----EEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence 6552 2 333332 356788999887753222110000 01 012210 334333333 6788889988
Q ss_pred CCeEEEEEeCC----------CCC-------CCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCC
Q 043460 223 ALSEAEIIEVP----------DKN-------NHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASG 285 (368)
Q Consensus 223 ~~~~~~~~~lP----------~~~-------~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~ 285 (368)
+.+.......+ ... ............+|.+.++...+..+.+|-+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~--------------- 300 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM--------------- 300 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---------------
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC---------------
Confidence 76532111000 000 0000011122345666677777788999987642
Q ss_pred CCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEE
Q 043460 286 ARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 286 ~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~ 342 (368)
..+..+.... ..+.-+.+.+++..++.. .+..+..||+++++...
T Consensus 301 ----~~~~~~~~~~--------~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 301 ----KCLYILSGHT--------DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 346 (464)
T ss_dssp ----EEEEEECCCS--------SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred ----cEEEEecCCC--------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 1222222110 223445667777766665 45678888888777543
No 19
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.53 E-value=4.7e-06 Score=84.56 Aligned_cols=212 Identities=6% Similarity=-0.063 Sum_probs=119.3
Q ss_pred CCcEEEEeec---CCCeeEEEEcccCccceecC-CCCc---CCCCCCCeeEEcCCCCCCeEEEEEEEeC----CCcEEEE
Q 043460 103 CNGLILLGSS---LSKHRYYVCNPLTKQCVAIP-KARE---DVLASPPALAFHPCDSSHYKIIRFLRAR----MDPEVDI 171 (368)
Q Consensus 103 ~~Glll~~~~---~~~~~~~v~NP~T~~~~~lP-~~~~---~~~~~~~~l~~d~~~~~~ykvv~~~~~~----~~~~~~v 171 (368)
.+|.|++.++ .....++++||.|++|..++ +.+. ......++.+.... +-+|+.++... ....+++
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~---~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR---NNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT---TTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc---CCEEEEEcCCCCCCCccccEEE
Confidence 4454444432 13456899999999999998 5220 01111223332210 22466665543 1357999
Q ss_pred EeCCCCCceeccccCCCCCceeeeccceEE-EeCCeEEEEEeC---CeEEEEEcCCCeEEEEEe----CCCCCCCCCCce
Q 043460 172 FSSENKTWITRKVSVKPRRPVSFYVLQSVY-SRGGILYNLTYR---STILRYNIEALSEAEIIE----VPDKNNHPCDSE 243 (368)
Q Consensus 172 yss~~~~W~~~~~~~~~~~p~~~~~~~~v~-~~~G~lywl~~~---~~il~fD~~~~~~~~~~~----lP~~~~~~~~~~ 243 (368)
|+..+++|+....++. .-....++. . +|.||.+++. ..+.+||+.+.+|+ .+. +|...... ..
T Consensus 473 yd~~t~~W~~~~~~p~-----~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~--~a 543 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSH-----TRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFK-DVTPKDEFFQNSLVS--AG 543 (695)
T ss_dssp EETTTTEEEECCCCSB-----CCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEE-ECCCSSGGGGSCCBS--CE
T ss_pred EeCCCCcEEECCCCCC-----CcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceE-EccCCCCCCCcccce--eE
Confidence 9999999999874322 112333444 5 9999999872 27999999999999 654 44333221 11
Q ss_pred eEEeeC-CeEEEEEEC--C---CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEec
Q 043460 244 VIGLCK-GALNYASRN--Q---STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHP 317 (368)
Q Consensus 244 ~l~~~~-G~L~~~~~~--~---~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
.+...+ |+|++++.. + ..-.+|..+-..+.+ .....|+.+..++ ...... .. ..+..
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w---------~~~~~W~~~~~~p--~~~R~~-----~~-~~~~~ 606 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA---------TEPITVIKKLQHP--LFQRYG-----SQ-IKYIT 606 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS---------SCCEEEEEEEECG--GGCCBS-----CE-EEEEE
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc---------ccceEEEEcCCCC--CCCccc-----ce-EEEeC
Confidence 111222 899999873 1 123566666554400 0000288877643 111111 11 12232
Q ss_pred CCCEEEEe-e---------CCeEEEEECCCCeEEEec
Q 043460 318 NSDIIFLG-S---------CDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 318 ~~~~v~~~-~---------~~~~~~ydl~t~~~~~v~ 344 (368)
+ +.||+. + ...+..||+++++|+.+.
T Consensus 607 ~-~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 642 (695)
T 2zwa_A 607 P-RKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP 642 (695)
T ss_dssp T-TEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC
T ss_pred C-CEEEEECCccCCCCCCCCCeEEEEECCCCeEEEee
Confidence 2 445554 1 346999999999999654
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.39 E-value=0.00017 Score=68.30 Aligned_cols=239 Identities=14% Similarity=0.155 Sum_probs=116.3
Q ss_pred CCCHH----HHHHHHcCCCchhhHHHhhhhHHHHhhhcCCchhhhh-cC---CCCC----------ceEeecc-CCCC--
Q 043460 5 YLSED----LITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRIL-RA---PSPL----------CGFLFPS-TQDS-- 63 (368)
Q Consensus 5 ~LP~D----ll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f~~~~-~~---~~~~----------~~~~~~~-~~~~-- 63 (368)
.||+| ++..||+.|++++|+++++|||+|+.++.++.+=+++ .+ ..++ .-+++.. ....
T Consensus 13 ~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 92 (435)
T 1p22_A 13 ALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGNA 92 (435)
T ss_dssp HTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC---------
T ss_pred HCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCCCCCC
Confidence 58999 9999999999999999999999999999987642221 00 0000 0001100 0000
Q ss_pred --CCe-eecc--------CCCCCCCCCCcccccccccCCCCCCCcEEEecCCcEEEEeecCCCeeEEEEcccCccceec-
Q 043460 64 --IGY-ISYS--------DNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAI- 131 (368)
Q Consensus 64 --~~~-~~f~--------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~l- 131 (368)
... ..+. .....+.........+... ......+..+...+..++... ....+.|||..|++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~v~~~~~d~~~l~~g~--~dg~i~iwd~~~~~~~~~~ 169 (435)
T 1p22_A 93 PPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCR-SETSKGVYCLQYDDQKIVSGL--RDNTIKIWDKNTLECKRIL 169 (435)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECC-CSSCCCEEEEECCSSEEEEEE--SSSCEEEEESSSCCEEEEE
T ss_pred CchhhHHhhhhhhhcchhHHHhhhccCCccceEEecc-cCCCCcEEEEEECCCEEEEEe--CCCeEEEEeCCCCeEEEEE
Confidence 000 0000 0000000000000000000 001122344444444554444 667899999988876543
Q ss_pred CCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEE
Q 043460 132 PKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLT 211 (368)
Q Consensus 132 P~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~ 211 (368)
+... .....+.+|. . .+.... ....+.+++..++.-...-.... ..-.++.. ++.....+
T Consensus 170 ~~h~----~~v~~l~~~~----~--~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~-~~~~l~s~ 229 (435)
T 1p22_A 170 TGHT----GSVLCLQYDE----R--VIITGS--SDSTVRVWDVNTGEMLNTLIHHC-------EAVLHLRF-NNGMMVTC 229 (435)
T ss_dssp CCCS----SCEEEEECCS----S--EEEEEE--TTSCEEEEESSSCCEEEEECCCC-------SCEEEEEC-CTTEEEEE
T ss_pred cCCC----CcEEEEEECC----C--EEEEEc--CCCeEEEEECCCCcEEEEEcCCC-------CcEEEEEE-cCCEEEEe
Confidence 2211 1223344332 2 222222 34578899988875332211000 01124555 44433333
Q ss_pred e-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEcc
Q 043460 212 Y-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 212 ~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
. ++.|..+|+.+.+-............ .......+|...++...+..+.||-+..
T Consensus 230 s~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 285 (435)
T 1p22_A 230 SKDRSIAVWDMASPTDITLRRVLVGHRA---AVNVVDFDDKYIVSASGDRTIKVWNTST 285 (435)
T ss_dssp ETTSCEEEEECSSSSCCEEEEEECCCSS---CEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred eCCCcEEEEeCCCCCCceeeeEecCCCC---cEEEEEeCCCEEEEEeCCCeEEEEECCc
Confidence 3 78899999987653211111111111 1122233777777777788999998765
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.22 E-value=3e-05 Score=78.09 Aligned_cols=212 Identities=9% Similarity=0.056 Sum_probs=121.3
Q ss_pred EecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEe-C---CCcEEEEEeCC
Q 043460 100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRA-R---MDPEVDIFSSE 175 (368)
Q Consensus 100 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~-~---~~~~~~vyss~ 175 (368)
....+|.|++........+.++||.|++|..+|+++..+. .++...-+ +-||+.++.. . ....+++|+..
T Consensus 249 ~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~--~~s~~~~~----dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 249 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG--YQSSATMS----DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS--SCEEEECT----TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred cCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccc--ccceEEec----CCeEEEEeCcccCCcccccceEeCCC
Confidence 3345777776655344579999999999999998774332 12222221 2246666542 1 23679999999
Q ss_pred CCCceeccccCCCCCceeeec-cceEEEeCCeEEEEEe----------CCeEEEEEcCCCeEEEEEeCCCC-----CCCC
Q 043460 176 NKTWITRKVSVKPRRPVSFYV-LQSVYSRGGILYNLTY----------RSTILRYNIEALSEAEIIEVPDK-----NNHP 239 (368)
Q Consensus 176 ~~~W~~~~~~~~~~~p~~~~~-~~~v~~~~G~lywl~~----------~~~il~fD~~~~~~~~~~~lP~~-----~~~~ 239 (368)
+++|+...... ..|..... ...+.. ++.+|.+.+ ...+..||+.+.+|......+.. ....
T Consensus 323 t~~W~~~~~~~--~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~ 399 (656)
T 1k3i_A 323 SKTWTSLPNAK--VNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM 399 (656)
T ss_dssp TTEEEEETTSC--SGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred CCcceeCCCcc--ccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCC
Confidence 99999874211 00111111 122335 777777764 35789999999998723322211 0011
Q ss_pred CCceeEE--eeCCeEEEEEECC---------CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEE--EeeeccccccCcc
Q 043460 240 CDSEVIG--LCKGALNYASRNQ---------STLLIWQLDDHRHHSNSHGSNKAASGARSWILKH--SICMDEWGNKLHV 306 (368)
Q Consensus 240 ~~~~~l~--~~~G~L~~~~~~~---------~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~--~i~~~~~~~~~~~ 306 (368)
. ...+. ..+|+|++++... ....|+..+-... .|..+. .++.....
T Consensus 400 ~-~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~---------------~W~~~~~~~mp~~R~~----- 458 (656)
T 1k3i_A 400 C-GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS---------------PNTVFASNGLYFARTF----- 458 (656)
T ss_dssp T-CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC---------------CEEEECTTCCSSCCBS-----
T ss_pred C-CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC---------------CeeEEccCCCCCCccc-----
Confidence 0 11221 3489999998621 1124555554445 898875 44422111
Q ss_pred ccceEEEEEecCCCEEEEee------------CCeEEEEECCCCeEEEecc
Q 043460 307 FGLTRFYNIHPNSDIIFLGS------------CDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 307 ~~~~~~~~~~~~~~~v~~~~------------~~~~~~ydl~t~~~~~v~~ 345 (368)
.-..+.+++.++++.. ...+..||+++++|+.+..
T Consensus 459 ----~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 459 ----HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp ----CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred ----CCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 1122334555544432 1468999999999999875
No 22
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.07 E-value=4.9e-05 Score=76.52 Aligned_cols=194 Identities=9% Similarity=-0.011 Sum_probs=111.2
Q ss_pred EEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---------CCcEEEEEeCCCCCceeccccCCC
Q 043460 118 YYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---------MDPEVDIFSSENKTWITRKVSVKP 188 (368)
Q Consensus 118 ~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---------~~~~~~vyss~~~~W~~~~~~~~~ 188 (368)
...+||.+++|..++++|.. .+..+.-+. +-+|+.+.... ....+++|+..+++|+....+..+
T Consensus 168 ~~~~dp~~~~W~~~~~~P~~----~~~~av~~~---~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~ 240 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPIV----PAAAAIEPT---SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK 240 (656)
T ss_dssp CCCCCTTSCEEEEEEECSSC----CSEEEEETT---TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS
T ss_pred cccCCCCCCeeeeeccCCCC----ceeEEEEec---CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC
Confidence 34568999999998777631 123333331 33566665432 123689999999999988754322
Q ss_pred CCceeeecc-ceEEEeCCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEEEE-CC---C
Q 043460 189 RRPVSFYVL-QSVYSRGGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYASR-NQ---S 260 (368)
Q Consensus 189 ~~p~~~~~~-~~v~~~~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~-~~---~ 260 (368)
. ..... .++.. +|.||.+++ ...+..||+.+.+|...-++|.... ...++.. +|+|+++.. .+ .
T Consensus 241 ~---~~~~~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~----~~s~~~~~dg~iyv~GG~~~~~~~ 312 (656)
T 1k3i_A 241 H---DMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG----YQSSATMSDGRVFTIGGSWSGGVF 312 (656)
T ss_dssp C---CCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS----SCEEEECTTSCEEEECCCCCSSSC
T ss_pred C---CCccccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCcccc----ccceEEecCCeEEEEeCcccCCcc
Confidence 1 11111 23456 899999987 4579999999999993334443322 2355666 999999987 22 1
Q ss_pred eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeecccccc-Ccc----ccceEEEEEecCCCEEEEeeCCeEEEEEC
Q 043460 261 TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNK-LHV----FGLTRFYNIHPNSDIIFLGSCDMIYRYHL 335 (368)
Q Consensus 261 ~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~-~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~ydl 335 (368)
.-.+++.+-..+ .|+.+.......+... ... .....+++ ..++.++.......+.+||+
T Consensus 313 ~~~~e~yd~~t~---------------~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~G-g~~g~~~~~~~~~~v~~yd~ 376 (656)
T 1k3i_A 313 EKNGEVYSPSSK---------------TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG-WKKGSVFQAGPSTAMNWYYT 376 (656)
T ss_dssp CCCEEEEETTTT---------------EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEE-CGGGCEEECCSSSEEEEEEC
T ss_pred cccceEeCCCCC---------------cceeCCCccccccccccccceeecCCceEEEE-CCCCcEEEecCccceeeeec
Confidence 123444444445 8998743221111111 000 01122222 22333332234568999999
Q ss_pred CCCeEEE
Q 043460 336 KTNKMEL 342 (368)
Q Consensus 336 ~t~~~~~ 342 (368)
++++|..
T Consensus 377 ~~~~w~~ 383 (656)
T 1k3i_A 377 SGSGDVK 383 (656)
T ss_dssp STTCEEE
T ss_pred CCcceee
Confidence 9998764
No 23
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.76 E-value=1.1e-05 Score=71.49 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460 5 YLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI 42 (368)
Q Consensus 5 ~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f 42 (368)
.||+|++..||+.|++++|+|+.+|||+||.+.+++..
T Consensus 7 ~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~L 44 (312)
T 3l2o_B 7 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPIL 44 (312)
T ss_dssp HSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHH
T ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchH
Confidence 69999999999999999999999999999999999865
No 24
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.74 E-value=0.0003 Score=71.26 Aligned_cols=155 Identities=7% Similarity=-0.087 Sum_probs=94.5
Q ss_pred CcEEEEEeCCCCCceecc-ccCCCCCceeeeccceEEEe-CCeEEEEEe-------CCeEEEEEcCCCeEEEEEeCCCCC
Q 043460 166 DPEVDIFSSENKTWITRK-VSVKPRRPVSFYVLQSVYSR-GGILYNLTY-------RSTILRYNIEALSEAEIIEVPDKN 236 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~-~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-------~~~il~fD~~~~~~~~~~~lP~~~ 236 (368)
...+.+|+..+++|+... .......|..-....++.+. +|.+|.+++ -..+..||+.+.+|+..-++|...
T Consensus 411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R 490 (695)
T 2zwa_A 411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR 490 (695)
T ss_dssp CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred cCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence 346899999999999987 31111111111222334442 788999987 146899999999999333455433
Q ss_pred CCCCCceeEEe-eCCeEEEEEEC-CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEE
Q 043460 237 NHPCDSEVIGL-CKGALNYASRN-QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYN 314 (368)
Q Consensus 237 ~~~~~~~~l~~-~~G~L~~~~~~-~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~ 314 (368)
. ....+. .+|+|++++.. ... .+|..+-..+ .|+.+........... ....+.
T Consensus 491 ~----~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~---------------~W~~~~~~g~~p~~r~-----~~~a~v 545 (695)
T 2zwa_A 491 F----RHSACSLPDGNVLILGGVTEGP-AMLLYNVTEE---------------IFKDVTPKDEFFQNSL-----VSAGLE 545 (695)
T ss_dssp B----SCEEEECTTSCEEEECCBCSSC-SEEEEETTTT---------------EEEECCCSSGGGGSCC-----BSCEEE
T ss_pred c----cceEEEEcCCEEEEECCCCCCC-CEEEEECCCC---------------ceEEccCCCCCCCccc-----ceeEEE
Confidence 2 224555 49999999873 333 7888877666 8999876321001111 011122
Q ss_pred EecCCCEEEEee---------CCeEEEEECCCCe------EEEecc
Q 043460 315 IHPNSDIIFLGS---------CDMIYRYHLKTNK------MELFST 345 (368)
Q Consensus 315 ~~~~~~~v~~~~---------~~~~~~ydl~t~~------~~~v~~ 345 (368)
+..+.+.||+.+ ...+++||+++++ |+.+..
T Consensus 546 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~ 591 (695)
T 2zwa_A 546 FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ 591 (695)
T ss_dssp EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE
T ss_pred EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC
Confidence 333435566652 2469999999999 888754
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.29 E-value=0.00011 Score=67.05 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460 4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI 42 (368)
Q Consensus 4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f 42 (368)
..||+|++.+||.+|+.+++++++.|||+|+.++.++..
T Consensus 10 ~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp SSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred hhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 479999999999999999999999999999999987654
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.74 E-value=0.00064 Score=67.08 Aligned_cols=33 Identities=18% Similarity=0.465 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHcCCC-chhhHHHhhhhHHHHhh
Q 043460 4 IYLSEDLITEILSRLP-VKSVVGFKIVSKTWNNL 36 (368)
Q Consensus 4 ~~LP~Dll~~IL~rLp-~~~l~r~r~Vck~Wr~l 36 (368)
..||+|++.+||++|| .+++++++.|||+|+.+
T Consensus 7 ~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 7 LSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ---CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4799999999999999 99999999999999988
No 27
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.63 E-value=0.36 Score=43.39 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=110.8
Q ss_pred CCcEEEEeecCCCeeEEEEcccCccc-eecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQC-VAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~-~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
.++.+.+... ....+.|+|+.|++. ..+|... ...++.+++. . +++.... ....+.+++..+++-..
T Consensus 52 ~~~~lyv~~~-~~~~v~viD~~t~~~~~~i~~~~-----~p~~i~~~~~---g-~lyv~~~--~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 52 RDGIGWIVVN-NSHVIFAIDINTFKEVGRITGFT-----SPRYIHFLSD---E-KAYVTQI--WDYRIFIINPKTYEITG 119 (328)
T ss_dssp ETTEEEEEEG-GGTEEEEEETTTCCEEEEEECCS-----SEEEEEEEET---T-EEEEEEB--SCSEEEEEETTTTEEEE
T ss_pred ECCEEEEEEc-CCCEEEEEECcccEEEEEcCCCC-----CCcEEEEeCC---C-eEEEEEC--CCCeEEEEECCCCeEEE
Confidence 3455555443 456899999999987 4465321 2345666552 3 5554442 24678899998876432
Q ss_pred ccccCCCC-CceeeeccceEEEeCCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC
Q 043460 182 RKVSVKPR-RPVSFYVLQSVYSRGGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN 258 (368)
Q Consensus 182 ~~~~~~~~-~p~~~~~~~~v~~~~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~ 258 (368)
.-. .... .... ....-+.. +|.+|.... ...|.++|+.+.+....++.+..... .....+|+++++...
T Consensus 120 ~i~-~g~~~~~~~-~p~~i~~~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~-----i~~~~dG~l~v~~~~ 191 (328)
T 3dsm_A 120 YIE-CPDMDMESG-STEQMVQY-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTS-----LVMDKYNKMWTITDG 191 (328)
T ss_dssp EEE-CTTCCTTTC-BCCCEEEE-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCC-----CEECTTSEEEEEBCC
T ss_pred EEE-cCCccccCC-CcceEEEE-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccc-----eEEcCCCCEEEEECC
Confidence 111 1110 0000 11111225 888988864 67899999999887646665432211 223447898777653
Q ss_pred C---C-----eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeE
Q 043460 259 Q---S-----TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMI 330 (368)
Q Consensus 259 ~---~-----~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 330 (368)
. . .-.|++++..+. +- +..+..+. . ....-+++.++++.+|+... .+
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~---------------~v--~~~~~~~~-g------~~p~~la~~~d~~~lyv~~~-~v 246 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETF---------------TV--EKQFKFKL-G------DWPSEVQLNGTRDTLYWINN-DI 246 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTT---------------EE--EEEEECCT-T------CCCEEEEECTTSCEEEEESS-SE
T ss_pred CccCCccccCCceEEEEECCCC---------------eE--EEEEecCC-C------CCceeEEEecCCCEEEEEcc-EE
Confidence 2 0 134555555323 32 23333211 0 11244677888888988765 99
Q ss_pred EEEECCCCeEE
Q 043460 331 YRYHLKTNKME 341 (368)
Q Consensus 331 ~~ydl~t~~~~ 341 (368)
+.+|++++++.
T Consensus 247 ~~~d~~t~~~~ 257 (328)
T 3dsm_A 247 WRMPVEADRVP 257 (328)
T ss_dssp EEEETTCSSCC
T ss_pred EEEECCCCcee
Confidence 99999998864
No 28
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.45 E-value=0.0011 Score=65.47 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHcCC-CchhhHHHhhhhHHHHhhh
Q 043460 4 IYLSEDLITEILSRL-PVKSVVGFKIVSKTWNNLI 37 (368)
Q Consensus 4 ~~LP~Dll~~IL~rL-p~~~l~r~r~Vck~Wr~li 37 (368)
..||+|++.+||++| |.+++.+++.|||+|+.+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 479999999999999 8999999999999999874
No 29
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.31 E-value=1.4 Score=38.84 Aligned_cols=192 Identities=7% Similarity=0.008 Sum_probs=106.4
Q ss_pred CCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc-ee
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW-IT 181 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W-~~ 181 (368)
..+.+++... ....+.+||+.|++....-... . ... ++.++|. +.+ ++.... ....+.+++..++.- ..
T Consensus 8 ~~~~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~--~-~~~-~~~~s~d--g~~-l~~~~~--~~~~i~~~d~~~~~~~~~ 77 (331)
T 3u4y_A 8 TSNFGIVVEQ-HLRRISFFSTDTLEILNQITLG--Y-DFV-DTAITSD--CSN-VVVTSD--FCQTLVQIETQLEPPKVV 77 (331)
T ss_dssp CCCEEEEEEG-GGTEEEEEETTTCCEEEEEECC--C-CEE-EEEECSS--SCE-EEEEES--TTCEEEEEECSSSSCEEE
T ss_pred CCCEEEEEec-CCCeEEEEeCcccceeeeEEcc--C-Ccc-eEEEcCC--CCE-EEEEeC--CCCeEEEEECCCCceeEE
Confidence 3455555543 5668999999999876532221 1 112 6777773 343 333332 245788999988864 21
Q ss_pred ccccCCCCCceeeeccceEEEeCCe-EEEEEeCC----eEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCe-EEE
Q 043460 182 RKVSVKPRRPVSFYVLQSVYSRGGI-LYNLTYRS----TILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGA-LNY 254 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~~~G~-lywl~~~~----~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~-L~~ 254 (368)
... .. ..|.. .-.+.- +|. +| ..... .|..+|+.+.+....++.+.. ...+.. .+|+ |++
T Consensus 78 ~~~-~~-~~~~~---~~~~s~-dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~------~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 78 AIQ-EG-QSSMA---DVDITP-DDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYD------AVGIAISPNGNGLIL 144 (331)
T ss_dssp EEE-EC-SSCCC---CEEECT-TSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTT------EEEEEECTTSSCEEE
T ss_pred ecc-cC-CCCcc---ceEECC-CCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCC------ccceEECCCCCEEEE
Confidence 111 00 00111 011222 454 55 44433 899999998876534444322 123333 3665 777
Q ss_pred EEECCCe-EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEE
Q 043460 255 ASRNQST-LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIY 331 (368)
Q Consensus 255 ~~~~~~~-~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~ 331 (368)
....... +.+|.++..+. ........ . ... ....-+.+.+++..+|+. ....+.
T Consensus 145 ~~~~~~~~i~~~~~~~~g~---------------~~~~~~~~-~---~~~----~~~~~~~~spdg~~l~v~~~~~~~v~ 201 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGV---------------LFDTGQEF-I---SGG----TRPFNITFTPDGNFAFVANLIGNSIG 201 (331)
T ss_dssp EEETTTTEEEEEEECTTCC---------------EEEEEEEE-E---CSS----SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EecCCCceEEEEEECCCCc---------------EeecCCcc-c---cCC----CCccceEECCCCCEEEEEeCCCCeEE
Confidence 7676666 99999986432 22211111 1 111 123446778888877776 456899
Q ss_pred EEECCCCeE
Q 043460 332 RYHLKTNKM 340 (368)
Q Consensus 332 ~ydl~t~~~ 340 (368)
.||+++.+.
T Consensus 202 v~d~~~~~~ 210 (331)
T 3u4y_A 202 ILETQNPEN 210 (331)
T ss_dssp EEECSSTTS
T ss_pred EEECCCCcc
Confidence 999998774
No 30
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=94.87 E-value=1.1 Score=38.57 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=73.6
Q ss_pred ceEEEeCCeEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCC
Q 043460 198 QSVYSRGGILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHS 274 (368)
Q Consensus 198 ~~v~~~~G~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~ 274 (368)
+++...+|.||.-++ +..|.++|+.+++....+++|.... ...++..+++|+.+...+.. +|+.+..
T Consensus 24 qGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f----geGi~~~~~~ly~ltw~~~~--v~v~D~~---- 93 (243)
T 3mbr_X 24 EGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF----GAGIVAWRDRLIQLTWRNHE--GFVYDLA---- 93 (243)
T ss_dssp EEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC----EEEEEEETTEEEEEESSSSE--EEEEETT----
T ss_pred ccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc----eeEEEEeCCEEEEEEeeCCE--EEEEECC----
Confidence 455553888888776 3589999999998865788886532 23456678999998765544 4555542
Q ss_pred CCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEE
Q 043460 275 NSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKME 341 (368)
Q Consensus 275 ~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~ 341 (368)
.-.++.+++... .. .++..+++.+|+. .+.++..+|++|.+..
T Consensus 94 -------------tl~~~~ti~~~~--------~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~ 137 (243)
T 3mbr_X 94 -------------TLTPRARFRYPG--------EG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQV 137 (243)
T ss_dssp -------------TTEEEEEEECSS--------CC---CEEEECSSCEEEECSSSEEEEECTTTCCEE
T ss_pred -------------cCcEEEEEeCCC--------Cc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEE
Confidence 345666776432 11 2445566767776 5678999999997764
No 31
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=94.66 E-value=1.9 Score=37.10 Aligned_cols=189 Identities=12% Similarity=0.054 Sum_probs=96.7
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
..+|.+.+... ....++++|| +++...+..+. ......++..|+. + ++..... ....+.+|+. ++....
T Consensus 107 ~~~g~l~v~~~-~~~~i~~~d~-~g~~~~~~~~~--~~~~~~~i~~~~~--g--~l~v~~~--~~~~i~~~~~-~g~~~~ 175 (299)
T 2z2n_A 107 GPNGDIWFTEM-NGNRIGRITD-DGKIREYELPN--KGSYPSFITLGSD--N--ALWFTEN--QNNAIGRITE-SGDITE 175 (299)
T ss_dssp CTTSCEEEEET-TTTEEEEECT-TCCEEEEECSS--TTCCEEEEEECTT--S--CEEEEET--TTTEEEEECT-TCCEEE
T ss_pred CCCCCEEEEec-CCceEEEECC-CCCEEEecCCC--CCCCCceEEEcCC--C--CEEEEeC--CCCEEEEEcC-CCcEEE
Confidence 34666666543 3567889999 77766543221 1123346677762 2 2322221 2356778888 776654
Q ss_pred ccccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEEC
Q 043460 182 RKVSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRN 258 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~ 258 (368)
....... . .-.++.+. +|.+|+... ...|..||+ +.++. .+.+|..... ...+.. .+|.|++....
T Consensus 176 ~~~~~~~----~--~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~---~~~i~~~~~g~l~v~~~~ 244 (299)
T 2z2n_A 176 FKIPTPA----S--GPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNAR---PHAITAGAGIDLWFTEWG 244 (299)
T ss_dssp EECSSTT----C--CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCC---EEEEEECSTTCEEEEETT
T ss_pred eeCCCCC----C--cceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCC---ceeEEECCCCCEEEeccC
Confidence 3211110 1 11123331 578766554 578999999 77777 6666632211 223333 36887777655
Q ss_pred CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCC
Q 043460 259 QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKT 337 (368)
Q Consensus 259 ~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t 337 (368)
...+.++.. ++ ... .+... ... ....-+.+ .++. +++. ....+++||+++
T Consensus 245 ~~~i~~~d~---~g---------------~~~---~~~~~---~~~---~~~~~i~~-~~g~-l~v~~~~~~l~~~~~~~ 295 (299)
T 2z2n_A 245 ANKIGRLTS---NN---------------IIE---EYPIQ---IKS---AEPHGICF-DGET-IWFAMECDKIGKLTLIK 295 (299)
T ss_dssp TTEEEEEET---TT---------------EEE---EEECS---SSS---CCEEEEEE-CSSC-EEEEETTTEEEEEEEC-
T ss_pred CceEEEECC---CC---------------ceE---EEeCC---CCC---CccceEEe-cCCC-EEEEecCCcEEEEEcCc
Confidence 556655543 12 221 12111 000 11233444 5555 5555 567899999999
Q ss_pred CeEE
Q 043460 338 NKME 341 (368)
Q Consensus 338 ~~~~ 341 (368)
++++
T Consensus 296 ~~~~ 299 (299)
T 2z2n_A 296 DNME 299 (299)
T ss_dssp ----
T ss_pred ccCC
Confidence 8764
No 32
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=94.52 E-value=2.5 Score=37.76 Aligned_cols=197 Identities=11% Similarity=0.049 Sum_probs=105.6
Q ss_pred CcEEEEeec---CCCeeEEEEcccCcccee-cCCC--CcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC
Q 043460 104 NGLILLGSS---LSKHRYYVCNPLTKQCVA-IPKA--REDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK 177 (368)
Q Consensus 104 ~Glll~~~~---~~~~~~~v~NP~T~~~~~-lP~~--~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~ 177 (368)
+|++++... .....+.++||.|++... ++.. .........++.++. +. ++.+.. ..-.+.+++..++
T Consensus 2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~----~~-lyv~~~--~~~~v~viD~~t~ 74 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD----GI-GWIVVN--NSHVIFAIDINTF 74 (328)
T ss_dssp CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET----TE-EEEEEG--GGTEEEEEETTTC
T ss_pred CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC----CE-EEEEEc--CCCEEEEEECccc
Confidence 466666542 125789999999998764 2110 000001112344432 22 332222 2457899999988
Q ss_pred CceeccccCCCCCceeeeccceEEEeCCeEEEEE-eCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEE
Q 043460 178 TWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLT-YRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYAS 256 (368)
Q Consensus 178 ~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~-~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~ 256 (368)
+-...-. ....|.. -.+.- +|.+|+.. ....|.++|+.+.+....++++...........++..+|+|++..
T Consensus 75 ~~~~~i~--~~~~p~~----i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~ 147 (328)
T 3dsm_A 75 KEVGRIT--GFTSPRY----IHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNC 147 (328)
T ss_dssp CEEEEEE--CCSSEEE----EEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEE
T ss_pred EEEEEcC--CCCCCcE----EEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEc
Confidence 7522211 0011111 12335 89998887 478999999999887646776651100000123444788998887
Q ss_pred EC-CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-C-------
Q 043460 257 RN-QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-C------- 327 (368)
Q Consensus 257 ~~-~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~------- 327 (368)
.. +..+.++-++. . +. +.+++...-+ .-+.+.+++.+.+... .
T Consensus 148 ~~~~~~v~viD~~t--~---------------~~--~~~i~~g~~p---------~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 148 WSYQNRILKIDTET--D---------------KV--VDELTIGIQP---------TSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp CTTCCEEEEEETTT--T---------------EE--EEEEECSSCB---------CCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred CCCCCEEEEEECCC--C---------------eE--EEEEEcCCCc---------cceEEcCCCCEEEEECCCccCCccc
Confidence 63 55555554333 2 22 2334322111 1134566666444332 2
Q ss_pred ---CeEEEEECCCCeEEE
Q 043460 328 ---DMIYRYHLKTNKMEL 342 (368)
Q Consensus 328 ---~~~~~ydl~t~~~~~ 342 (368)
..++++|.+|+++.+
T Consensus 200 ~~~~~v~~id~~t~~v~~ 217 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEK 217 (328)
T ss_dssp BCCCEEEEEETTTTEEEE
T ss_pred cCCceEEEEECCCCeEEE
Confidence 579999999998764
No 33
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.42 E-value=2.6 Score=37.71 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=71.2
Q ss_pred CCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeE-EEEEEC-CCeEEEEEEccCCCCCCCCC
Q 043460 204 GGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGAL-NYASRN-QSTLLIWQLDDHRHHSNSHG 278 (368)
Q Consensus 204 ~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L-~~~~~~-~~~~~IW~l~~~~~~~~~~~ 278 (368)
+|. +|.... ...|.+||+.+.++.....++...........+.. .+|+. ++.... ...+.||.++..++
T Consensus 221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g------ 294 (361)
T 3scy_A 221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG------ 294 (361)
T ss_dssp TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC------
T ss_pred CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC------
Confidence 665 665553 67899999988877522223221111111223443 37764 444445 67899999985544
Q ss_pred CccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee--CCe--EEEEECCCCeEEEecc
Q 043460 279 SNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS--CDM--IYRYHLKTNKMELFST 345 (368)
Q Consensus 279 ~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~--~~~ydl~t~~~~~v~~ 345 (368)
.+..+..+.. . ...+-+++.+++..+++.. ... ++.+|.++++++.+..
T Consensus 295 ---------~~~~~~~~~~---g------~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~ 347 (361)
T 3scy_A 295 ---------TLTKVGYQLT---G------IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK 347 (361)
T ss_dssp ---------CEEEEEEEEC---S------SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC
T ss_pred ---------cEEEeeEecC---C------CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce
Confidence 6776666653 1 1123367888888888773 344 4447888999988764
No 34
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.30 E-value=3.2 Score=38.20 Aligned_cols=151 Identities=9% Similarity=0.120 Sum_probs=84.0
Q ss_pred EEEe-cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCC
Q 043460 98 ALID-CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSEN 176 (368)
Q Consensus 98 ~~~~-s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~ 176 (368)
.+++ |.+++|-+. -...++|||..|++...+-.... .......+.+.|. +.|- +.+. ....+.+++.++
T Consensus 109 ~~l~wS~~n~lAvg---ld~tV~lWd~~tg~~~~~~~~~~-~~~~V~sv~fspd--g~~l--asgs--~Dg~v~iWd~~~ 178 (420)
T 4gga_A 109 NLVDWSSGNVLAVA---LDNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKE--GNYL--AVGT--SSAEVQLWDVQQ 178 (420)
T ss_dssp BCEEECTTSEEEEE---ETTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTT--SSEE--EEEE--TTSCEEEEETTT
T ss_pred eeEEECCCCEEEEE---eCCEEEEEECCCCCEEEEEEecC-CCCcEEEEEECCC--CCEE--EEEE--CCCeEEEEEcCC
Confidence 3444 556766555 35689999999998776432211 1123345677762 3443 2232 355788999888
Q ss_pred CCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCeEEE
Q 043460 177 KTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGALNY 254 (368)
Q Consensus 177 ~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~ 254 (368)
+.-........ ..-.++.. ++.+-..+. +..+..+|....... ...+...... ...+. ..+|...+
T Consensus 179 ~~~~~~~~~h~-------~~v~~~s~-~~~~l~sgs~d~~i~~~d~~~~~~~-~~~~~~h~~~---~~~~~~~~~g~~l~ 246 (420)
T 4gga_A 179 QKRLRNMTSHS-------ARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQE---VCGLRWAPDGRHLA 246 (420)
T ss_dssp TEEEEEECCCS-------SCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSC---EEEEEECTTSSEEE
T ss_pred CcEEEEEeCCC-------CceEEEee-CCCEEEEEeCCCceeEeeeccccee-eEEecccccc---eeeeeecCCCCeee
Confidence 75322211000 01124555 565444444 677888888776554 3333222111 11222 33677777
Q ss_pred EEECCCeEEEEEEccC
Q 043460 255 ASRNQSTLLIWQLDDH 270 (368)
Q Consensus 255 ~~~~~~~~~IW~l~~~ 270 (368)
....+..+.||.....
T Consensus 247 s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 247 SGGNDNLVNVWPSAPG 262 (420)
T ss_dssp EEETTSCEEEEESSCC
T ss_pred eeeccccceEEeeccc
Confidence 7778889999988765
No 35
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=93.88 E-value=3.5 Score=37.14 Aligned_cols=187 Identities=13% Similarity=0.142 Sum_probs=102.9
Q ss_pred EEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecccc
Q 043460 106 LILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVS 185 (368)
Q Consensus 106 lll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~ 185 (368)
.+++... ....+.+||..+++....-... .....+.+.|. +.+ ++.... ....+.+++..++.-...-..
T Consensus 3 ~l~vs~~-~d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~d--g~~-l~~~~~--~d~~i~v~d~~~~~~~~~~~~ 72 (391)
T 1l0q_A 3 FAYIANS-ESDNISVIDVTSNKVTATIPVG----SNPMGAVISPD--GTK-VYVANA--HSNDVSIIDTATNNVIATVPA 72 (391)
T ss_dssp EEEEEET-TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTT--SSE-EEEEEG--GGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcC-CCCEEEEEECCCCeEEEEeecC----CCcceEEECCC--CCE-EEEECC--CCCeEEEEECCCCeEEEEEEC
Confidence 4444443 5678899999988765432111 12345667762 333 322222 245788999988764332211
Q ss_pred CCCCCceeeeccceEEEeCCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCe-EEEEEECCCe
Q 043460 186 VKPRRPVSFYVLQSVYSRGGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGA-LNYASRNQST 261 (368)
Q Consensus 186 ~~~~~p~~~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~-L~~~~~~~~~ 261 (368)
...+... ...- +|. +|.... .+.|..+|+.+.+....+..... ...+.. .+|+ |++....+..
T Consensus 73 --~~~v~~~----~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 73 --GSSPQGV----AVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS------PLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp --SSSEEEE----EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS------EEEEEECTTSSEEEEEETTTTE
T ss_pred --CCCccce----EECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC------cceEEECCCCCEEEEEeCCCCE
Confidence 0001111 1112 455 444443 57999999999877534443221 123333 3565 4455556778
Q ss_pred EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCe
Q 043460 262 LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNK 339 (368)
Q Consensus 262 ~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~ 339 (368)
+.+|-+.. . +.. ..+... ....-+.+.+++..+++. .+..+..+|+++++
T Consensus 140 v~~~d~~~--~---------------~~~--~~~~~~---------~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 140 VSVINTVT--K---------------AVI--NTVSVG---------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp EEEEETTT--T---------------EEE--EEEECC---------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEECCC--C---------------cEE--EEEecC---------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 99997654 2 222 222211 112345677788777665 45679999999987
Q ss_pred EEEe
Q 043460 340 MELF 343 (368)
Q Consensus 340 ~~~v 343 (368)
....
T Consensus 192 ~~~~ 195 (391)
T 1l0q_A 192 VIDT 195 (391)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
No 36
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.88 E-value=3.3 Score=36.77 Aligned_cols=169 Identities=14% Similarity=0.221 Sum_probs=91.0
Q ss_pred CCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCC-CCCceecccc-CCCC-CceeeeccceEEEeCCe-EEEEEe-CCeE
Q 043460 142 PPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSE-NKTWITRKVS-VKPR-RPVSFYVLQSVYSRGGI-LYNLTY-RSTI 216 (368)
Q Consensus 142 ~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~-~~~W~~~~~~-~~~~-~p~~~~~~~~v~~~~G~-lywl~~-~~~i 216 (368)
...+.++|. +. ++.... ....+.+|+.. ++........ .+.. .|... .+.- +|. +|.... ...|
T Consensus 143 ~~~~~~spd--g~--l~v~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~----~~sp-dg~~l~v~~~~~~~v 211 (347)
T 3hfq_A 143 IHYTDLTPD--NR--LAVIDL--GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL----VFSP-DGQYAFLAGELSSQI 211 (347)
T ss_dssp EEEEEECTT--SC--EEEEET--TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE----EECT-TSSEEEEEETTTTEE
T ss_pred ceEEEECCC--Cc--EEEEeC--CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE----EECC-CCCEEEEEeCCCCEE
Confidence 345777773 33 333322 34578889887 5665543211 1111 11111 2222 676 665544 5667
Q ss_pred EEEEcC--CCeEEEE--E-eCCCCCCCCCCceeEEe-eCCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCce
Q 043460 217 LRYNIE--ALSEAEI--I-EVPDKNNHPCDSEVIGL-CKGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSW 289 (368)
Q Consensus 217 l~fD~~--~~~~~~~--~-~lP~~~~~~~~~~~l~~-~~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W 289 (368)
.+||+. +.++... + ..|...........+.. .+|+ |++....+..+.+|.++.. + .+
T Consensus 212 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~-g---------------~~ 275 (347)
T 3hfq_A 212 ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD-G---------------HL 275 (347)
T ss_dssp EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG-G---------------CE
T ss_pred EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC-C---------------cE
Confidence 777766 4665411 1 22322111111122333 4776 5666667789999999853 2 46
Q ss_pred EEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEE--ECCCCeEEEecc
Q 043460 290 ILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRY--HLKTNKMELFST 345 (368)
Q Consensus 290 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~y--dl~t~~~~~v~~ 345 (368)
..+..++... ....-+++.+++..+++. ....+..| |.++++++.+..
T Consensus 276 ~~~~~~~~~~--------~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 276 TLIQQISTEG--------DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp EEEEEEECSS--------SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEeEEEecCC--------CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEeccc
Confidence 6666555311 112336788888888887 33556666 888899887765
No 37
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=93.30 E-value=1.7 Score=37.92 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=70.4
Q ss_pred ceEEEeCCeEEEEEeC---CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCC
Q 043460 198 QSVYSRGGILYNLTYR---STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHS 274 (368)
Q Consensus 198 ~~v~~~~G~lywl~~~---~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~ 274 (368)
+++...+|.||.-++. ..|.++|+.+++....+++|.... ...++..+++|+++...+..+ |+.+-.
T Consensus 46 qGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F----geGit~~g~~ly~ltw~~~~v--~v~D~~---- 115 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF----GEGISDWKDKIVGLTWKNGLG--FVWNIR---- 115 (262)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC----EEEEEEETTEEEEEESSSSEE--EEEETT----
T ss_pred ceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc----eeEEEEeCCEEEEEEeeCCEE--EEEECc----
Confidence 4544438888887763 489999999998865778875432 224666788998887655544 444442
Q ss_pred CCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEE
Q 043460 275 NSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKME 341 (368)
Q Consensus 275 ~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~ 341 (368)
.-.++.+++...- . .++..+++.+|+. ....+..+|++|.+..
T Consensus 116 -------------t~~~~~ti~~~~e--------G---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 116 -------------NLRQVRSFNYDGE--------G---WGLTHNDQYLIMSDGTPVLRFLDPESLTPV 159 (262)
T ss_dssp -------------TCCEEEEEECSSC--------C---CCEEECSSCEEECCSSSEEEEECTTTCSEE
T ss_pred -------------cCcEEEEEECCCC--------c---eEEecCCCEEEEECCCCeEEEEcCCCCeEE
Confidence 2345566664321 1 1344456667776 4567888898887654
No 38
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=92.50 E-value=5.4 Score=35.33 Aligned_cols=214 Identities=6% Similarity=0.036 Sum_probs=110.4
Q ss_pred cCCcEEEEeec-CCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCC-CCCc
Q 043460 102 CCNGLILLGSS-LSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSE-NKTW 179 (368)
Q Consensus 102 s~~Glll~~~~-~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~-~~~W 179 (368)
+-+|-|.+... .....+.+|+..+++...+..... ......++.++|. +.+-++ ... ....+.+|+.. ++..
T Consensus 48 spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~a~spd--g~~l~~-~~~--~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 48 SAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYVAVDEA--RQLVYS-ANY--HKGTAEVMKIAADGAL 121 (347)
T ss_dssp CTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCCCSEEEEETT--TTEEEE-EET--TTTEEEEEEECTTSCE
T ss_pred ccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCCCEEEEECCC--CCEEEE-EeC--CCCEEEEEEeCCCCCe
Confidence 44665443332 235789999998877665543111 1123456777773 344322 221 24567788774 4444
Q ss_pred eeccccCCC-CCce--e---eeccceEEEeCCeEEEEEe-CCeEEEEEcC-CCeEEEE--EeCCCCCCCCCCceeEEe-e
Q 043460 180 ITRKVSVKP-RRPV--S---FYVLQSVYSRGGILYNLTY-RSTILRYNIE-ALSEAEI--IEVPDKNNHPCDSEVIGL-C 248 (368)
Q Consensus 180 ~~~~~~~~~-~~p~--~---~~~~~~v~~~~G~lywl~~-~~~il~fD~~-~~~~~~~--~~lP~~~~~~~~~~~l~~-~ 248 (368)
+........ ..|. . ....-.+.- +|.+|.... ...|..||+. +++.... +..+.... ...++. .
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~----p~~~~~sp 196 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFG----PRHLVFSP 196 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCC----EEEEEECT
T ss_pred eecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCC----CceEEECC
Confidence 433211110 0010 0 000012223 677655443 5679999998 5555412 23332211 123333 3
Q ss_pred CCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--
Q 043460 249 KGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-- 325 (368)
Q Consensus 249 ~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-- 325 (368)
+|+ |++.......+.+|.++...+ .+..+..+... ...........-+++.++|..+|+.
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g---------------~~~~~~~~~~~--~~~~~~~~~~~~i~~spdG~~l~v~~~ 259 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTG---------------AFTQLGIVKTI--PADYTAHNGAAAIRLSHDGHFLYVSNR 259 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTT---------------EEEEEEEEESS--CTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCC---------------ceEEeeeeeec--CCCCCCCCcceeEEECCCCCEEEEEeC
Confidence 777 555555677899999987544 66666555411 1100000123446788888888776
Q ss_pred eCCeEEEEECCCC-eEEEe
Q 043460 326 SCDMIYRYHLKTN-KMELF 343 (368)
Q Consensus 326 ~~~~~~~ydl~t~-~~~~v 343 (368)
....+..||++.. +++.+
T Consensus 260 ~~~~v~v~~~~~~g~~~~~ 278 (347)
T 3hfq_A 260 GYNTLAVFAVTADGHLTLI 278 (347)
T ss_dssp TTTEEEEEEECGGGCEEEE
T ss_pred CCCEEEEEEECCCCcEEEe
Confidence 3577899998733 44444
No 39
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=92.46 E-value=4.9 Score=34.78 Aligned_cols=195 Identities=10% Similarity=-0.007 Sum_probs=100.0
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCc-CCCCCCCeeEEcCCCCCCeEEEEE--EE-----------eCCCc
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKARE-DVLASPPALAFHPCDSSHYKIIRF--LR-----------ARMDP 167 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~-~~~~~~~~l~~d~~~~~~ykvv~~--~~-----------~~~~~ 167 (368)
+.+|.+++... ....++++||.+++...+..... ........+.+|+. +.+-+.-. .. .....
T Consensus 77 ~~dg~l~v~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~ 153 (296)
T 3e5z_A 77 NKQGHLIACSH-GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGR 153 (296)
T ss_dssp CTTCCEEEEET-TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred CCCCcEEEEec-CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCc
Confidence 45676666543 34689999999998877643221 11223345677772 33222100 00 00122
Q ss_pred EEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcC-CCeE-E--EEEeCCCCCCCCCCc
Q 043460 168 EVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIE-ALSE-A--EIIEVPDKNNHPCDS 242 (368)
Q Consensus 168 ~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~-~~~~-~--~~~~lP~~~~~~~~~ 242 (368)
.+..++.. +.-+..... .....+-++.- +|.+++... ...|.+||+. +++. . ..+.. . .... .
T Consensus 154 ~l~~~~~~-g~~~~~~~~------~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~-~~~p-~ 221 (296)
T 3e5z_A 154 WVFRLAPD-GTLSAPIRD------RVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV--E-PGKT-D 221 (296)
T ss_dssp EEEEECTT-SCEEEEECC------CSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC--S-SSCC-C
T ss_pred EEEEECCC-CCEEEeecC------CCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC--C-CCCC-C
Confidence 45555554 443332210 11111112223 677764433 5789999987 5555 2 12211 1 1110 1
Q ss_pred eeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEE-ecCCCE
Q 043460 243 EVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNI-HPNSDI 321 (368)
Q Consensus 243 ~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~ 321 (368)
......+|.|++.. ...+.+|..+ + .-. ..+..+.-. .-+.+ .++++.
T Consensus 222 ~i~~d~~G~l~v~~--~~~v~~~~~~---g---------------~~~--~~~~~~~~~---------~~~~f~~~d~~~ 270 (296)
T 3e5z_A 222 GLRVDAGGLIWASA--GDGVHVLTPD---G---------------DEL--GRVLTPQTT---------SNLCFGGPEGRT 270 (296)
T ss_dssp SEEEBTTSCEEEEE--TTEEEEECTT---S---------------CEE--EEEECSSCC---------CEEEEESTTSCE
T ss_pred eEEECCCCCEEEEc--CCeEEEECCC---C---------------CEE--EEEECCCCc---------eeEEEECCCCCE
Confidence 23334588888877 4566665432 2 222 223321111 11344 457788
Q ss_pred EEEeeCCeEEEEECCCCeEEE
Q 043460 322 IFLGSCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 322 v~~~~~~~~~~ydl~t~~~~~ 342 (368)
+|+.....+++++++++++|+
T Consensus 271 L~v~t~~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 271 LYMTVSTEFWSIETNVRGLEH 291 (296)
T ss_dssp EEEEETTEEEEEECSCCBCCC
T ss_pred EEEEcCCeEEEEEcccccccc
Confidence 999988899999999999875
No 40
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=92.41 E-value=6 Score=35.66 Aligned_cols=110 Identities=13% Similarity=0.041 Sum_probs=60.2
Q ss_pred CCcEEEEeecCCCeeEEEEcccCccceecCCCCcCC---CCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC-
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDV---LASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT- 178 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~---~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~- 178 (368)
.+|.|.+.. ....++.+|+.|++.++--..+... ......+...+...++ +|+... ..-.+..++.++|+
T Consensus 52 ~~~~v~~~~--~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~---~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 52 ADNVVYAAD--RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGG-HVYIGS---EKAQVYALNTSDGTV 125 (376)
T ss_dssp ETTEEEEEC--TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETT-EEEEEE---TTSEEEEEETTTCCE
T ss_pred ECCEEEEEc--CCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCC-EEEEEc---CCCEEEEEECCCCCE
Confidence 366666664 4558889999998866422111000 0000111111111111 233222 24568888888875
Q ss_pred -ceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEE
Q 043460 179 -WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEA 227 (368)
Q Consensus 179 -W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~ 227 (368)
|+..... .....++.. +|.+|.....+.+.+||..+++..
T Consensus 126 ~W~~~~~~--------~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~ 166 (376)
T 3q7m_A 126 AWQTKVAG--------EALSRPVVS-DGLVLIHTSNGQLQALNEADGAVK 166 (376)
T ss_dssp EEEEECSS--------CCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEeCCC--------ceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEE
Confidence 7654311 012335677 898888777888999999877543
No 41
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=92.31 E-value=5.5 Score=40.12 Aligned_cols=190 Identities=11% Similarity=0.065 Sum_probs=98.5
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
..+.+.|||..++....+..... +......+.+.+...+. .++... ....+.+++..++.|...........+.
T Consensus 29 ~dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~-~l~s~s---~Dg~I~vwd~~~~~~~~~~~~~~h~~~V- 102 (753)
T 3jro_A 29 SDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGT-ILASCS---YDGKVLIWKEENGRWSQIAVHAVHSASV- 102 (753)
T ss_dssp TTTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCS-EEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCE-
T ss_pred CCCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCC-EEEEEe---CCCeEEEEECCCCcccccccccCCCCCe-
Confidence 44566777766433332221110 11233455665521122 333322 2457888998888876654321111011
Q ss_pred eeccceEEEe-C--CeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--------------CCeEEEE
Q 043460 194 FYVLQSVYSR-G--GILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--------------KGALNYA 255 (368)
Q Consensus 194 ~~~~~~v~~~-~--G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--------------~G~L~~~ 255 (368)
.++.+. + |.+...+. ++.|..+|+.+..-.....+...... ...+... +|.+.++
T Consensus 103 ----~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~---v~~l~~~p~~~~~~~~~~~~~d~~~l~s 175 (753)
T 3jro_A 103 ----NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG---VNSASWAPATIEEDGEHNGTKESRKFVT 175 (753)
T ss_dssp ----EEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC---EEEEEECCCC---------CGGGCCEEE
T ss_pred ----EEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc---eEEEEecCcccccccccccCCCCCEEEE
Confidence 122220 2 54444444 67888999887632201111111100 1112211 4677777
Q ss_pred EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecC---CCEEEEe-eCCeEE
Q 043460 256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPN---SDIIFLG-SCDMIY 331 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~-~~~~~~ 331 (368)
+..+..+.||-+..... .+.....+.... ..+.-+.+.++ +..++.. .++.+.
T Consensus 176 gs~dg~I~iwd~~~~~~---------------~~~~~~~~~~h~--------~~V~~l~~sp~~~~~~~l~s~s~Dg~I~ 232 (753)
T 3jro_A 176 GGADNLVKIWKYNSDAQ---------------TYVLESTLEGHS--------DWVRDVAWSPTVLLRSYLASVSQDRTCI 232 (753)
T ss_dssp EETTSCEEEEEEETTTT---------------EEEEEEEECCCS--------SCEEEEEECCCCSSSEEEEEEESSSCEE
T ss_pred EECCCeEEEEeccCCcc---------------cceeeeeecCCC--------CcEEEEEeccCCCCCCEEEEEecCCEEE
Confidence 77888999999987654 676666554211 22444566776 5555555 566788
Q ss_pred EEECCCCe
Q 043460 332 RYHLKTNK 339 (368)
Q Consensus 332 ~ydl~t~~ 339 (368)
.||+++.+
T Consensus 233 iwd~~~~~ 240 (753)
T 3jro_A 233 IWTQDNEQ 240 (753)
T ss_dssp EEEESSSS
T ss_pred EecCCCCC
Confidence 99988863
No 42
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=92.16 E-value=4.2 Score=35.46 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=69.9
Q ss_pred CeEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCcc
Q 043460 205 GILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNK 281 (368)
Q Consensus 205 G~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~ 281 (368)
|.||.-.+ ...|.++|+.+.+....+++|.... ...++..+++|++....+..+ ++.+-.
T Consensus 32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f----geGi~~~g~~lyv~t~~~~~v--~viD~~----------- 94 (266)
T 2iwa_A 32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF----GEGLTLLNEKLYQVVWLKNIG--FIYDRR----------- 94 (266)
T ss_dssp TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC----EEEEEEETTEEEEEETTCSEE--EEEETT-----------
T ss_pred CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc----eEEEEEeCCEEEEEEecCCEE--EEEECC-----------
Confidence 78888765 5799999999988765777765322 224555677888887655554 445542
Q ss_pred CCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEE-Eec
Q 043460 282 AASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKME-LFS 344 (368)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~-~v~ 344 (368)
.-..+.+|+.. .+. . .++..+++.+|+. ....+..+|++|.+.. .+.
T Consensus 95 ------t~~v~~~i~~g-~~~------g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 95 ------TLSNIKNFTHQ-MKD------G---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp ------TTEEEEEEECC-SSS------C---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred ------CCcEEEEEECC-CCC------e---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 34566677644 121 1 2455566667766 5678999999997754 444
No 43
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=91.79 E-value=6.1 Score=34.42 Aligned_cols=199 Identities=8% Similarity=0.070 Sum_probs=100.2
Q ss_pred ecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 101 DCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 101 ~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
+..+|-|+..+. ....++.+||.+++...+.... ...+++.++. +. ++... ...+.+|+.+++..+
T Consensus 21 ~~~~~~l~~~d~-~~~~i~~~d~~~~~~~~~~~~~-----~~~~i~~~~d--G~--l~v~~----~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 21 EEVSNSLLFVDI-PAKKVCRWDSFTKQVQRVTMDA-----PVSSVALRQS--GG--YVATI----GTKFCALNWKEQSAV 86 (297)
T ss_dssp ETTTTEEEEEET-TTTEEEEEETTTCCEEEEECSS-----CEEEEEEBTT--SS--EEEEE----TTEEEEEETTTTEEE
T ss_pred ECCCCEEEEEEC-CCCEEEEEECCCCcEEEEeCCC-----ceEEEEECCC--CC--EEEEE----CCeEEEEECCCCcEE
Confidence 334555555543 5568899999998776553221 2346677762 34 22222 347888999999887
Q ss_pred eccccCCCCCceeeeccceEEE-eCCeEEEEEe------------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYS-RGGILYNLTY------------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL 247 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~------------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~ 247 (368)
....... ..+.. .-+.+.+ .+|.+|+-.. ...|..+|.... ......- ... .-.++.
T Consensus 87 ~~~~~~~-~~~~~--~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~---~~~---pngi~~ 156 (297)
T 3g4e_A 87 VLATVDN-DKKNN--RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQ---VDI---SNGLDW 156 (297)
T ss_dssp EEEECCT-TCSSE--EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEE---ESB---EEEEEE
T ss_pred EEEecCC-CCCCC--CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeec---ccc---ccceEE
Confidence 6543211 11111 1122322 1688766442 136888887643 3302211 000 112333
Q ss_pred -eCCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee-eccccccCccccceEEEEEecCCCEEEE
Q 043460 248 -CKGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC-MDEWGNKLHVFGLTRFYNIHPNSDIIFL 324 (368)
Q Consensus 248 -~~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 324 (368)
.+|+ |+++.....++.+|.++..++ .......+. +.... ....=+++..+|. +++
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G---------------~~~~~~~~~~~~~~~------~~p~g~~~d~~G~-lwv 214 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTG---------------QISNRRSVYKLEKEE------QIPDGMCIDAEGK-LWV 214 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTC---------------CEEEEEEEEECCGGG------CEEEEEEEBTTSC-EEE
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCC---------------cccCcEEEEECCCCC------CCCCeeEECCCCC-EEE
Confidence 3564 666666566666666653222 332222111 11100 1112244555665 555
Q ss_pred e--eCCeEEEEECCCCeE-EEecc
Q 043460 325 G--SCDMIYRYHLKTNKM-ELFST 345 (368)
Q Consensus 325 ~--~~~~~~~ydl~t~~~-~~v~~ 345 (368)
. ....|.+||++|.+. +.+..
T Consensus 215 a~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 215 ACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEETTTEEEEECTTTCCEEEEEEC
T ss_pred EEcCCCEEEEEcCCCceEEEEEEC
Confidence 4 456799999997664 44443
No 44
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=91.36 E-value=2.4 Score=37.01 Aligned_cols=110 Identities=7% Similarity=-0.050 Sum_probs=70.9
Q ss_pred ceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCC
Q 043460 198 QSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNS 276 (368)
Q Consensus 198 ~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~ 276 (368)
+++...++.||.-++ .+.|.++|+.+++....+ +|.... ...++..+++|+++...+.. +|+.+-.
T Consensus 58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~F----geGit~~g~~Ly~ltw~~~~--v~V~D~~------ 124 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIF----AEGLASDGERLYQLTWTEGL--LFTWSGM------ 124 (268)
T ss_dssp EEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCC----EEEEEECSSCEEEEESSSCE--EEEEETT------
T ss_pred ceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcc----eeEEEEeCCEEEEEEccCCE--EEEEECC------
Confidence 455553778888776 456999999999886456 775421 22456667889888665554 4555542
Q ss_pred CCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEE
Q 043460 277 HGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 277 ~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~ 342 (368)
.-.++.+|+...- . .++..++..+|.. ....+..+|++|.+...
T Consensus 125 -----------Tl~~~~ti~~~~e--------G---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~ 169 (268)
T 3nok_A 125 -----------PPQRERTTRYSGE--------G---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVG 169 (268)
T ss_dssp -----------TTEEEEEEECSSC--------C---CCEEEETTEEEEECSSSEEEEECTTTCCEEE
T ss_pred -----------cCcEEEEEeCCCc--------e---eEEecCCCEEEEECCCCEEEEEcCCCCeEEE
Confidence 3456667764311 1 2344556777777 57789999999987643
No 45
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=91.34 E-value=8.4 Score=35.13 Aligned_cols=192 Identities=11% Similarity=0.114 Sum_probs=104.7
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
+.+|-+++... ....+.+||+.+++... ++... .....+.++|. +.+ ++.... ....+.+|+.+++...
T Consensus 178 ~~~~~~~~s~~-~d~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~-l~~~~~--~~~~i~~~d~~~~~~~ 247 (433)
T 3bws_A 178 PEHNELWVSQM-QANAVHVFDLKTLAYKATVDLTG----KWSKILLYDPI--RDL-VYCSNW--ISEDISVIDRKTKLEI 247 (433)
T ss_dssp GGGTEEEEEEG-GGTEEEEEETTTCCEEEEEECSS----SSEEEEEEETT--TTE-EEEEET--TTTEEEEEETTTTEEE
T ss_pred cCCCEEEEEEC-CCCEEEEEECCCceEEEEEcCCC----CCeeEEEEcCC--CCE-EEEEec--CCCcEEEEECCCCcEE
Confidence 34565555543 45688899998866543 33111 12345677762 333 322221 2457889999887643
Q ss_pred eccccCCCCCceeeeccceEEEeCCeEEEEEe---------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCC
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY---------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKG 250 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~---------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G 250 (368)
..-.. ...+.. -.+.- +|...+.+. ++.|..+|+.+.+....+..+.. ...+. ..+|
T Consensus 248 ~~~~~--~~~~~~----~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~g 314 (433)
T 3bws_A 248 RKTDK--IGLPRG----LLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN------KRHIVSGNTE 314 (433)
T ss_dssp EECCC--CSEEEE----EEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC------EEEEEECSST
T ss_pred EEecC--CCCceE----EEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC------cceEEECCCC
Confidence 32210 110111 11222 554444443 35788999998876523332221 11223 3356
Q ss_pred -eEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC--
Q 043460 251 -ALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC-- 327 (368)
Q Consensus 251 -~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 327 (368)
.|++....+..+.+|.++.. ..+..++.. ....-+++.+++..+++...
T Consensus 315 ~~l~~~~~~~~~v~v~d~~~~-------------------~~~~~~~~~---------~~~~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 315 NKIYVSDMCCSKIEVYDLKEK-------------------KVQKSIPVF---------DKPNTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp TEEEEEETTTTEEEEEETTTT-------------------EEEEEEECS---------SSEEEEEECTTSSEEEEEECCC
T ss_pred CEEEEEecCCCEEEEEECCCC-------------------cEEEEecCC---------CCCCeEEEcCCCCEEEEEecCC
Confidence 46666667788999987642 222333311 12344667788887877632
Q ss_pred --------------CeEEEEECCCCeEEEec
Q 043460 328 --------------DMIYRYHLKTNKMELFS 344 (368)
Q Consensus 328 --------------~~~~~ydl~t~~~~~v~ 344 (368)
+.++.+|+++.+.....
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred CccccccccccccceEEEEEECCCCcEEEEe
Confidence 38999999998865543
No 46
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=90.62 E-value=9.1 Score=34.30 Aligned_cols=189 Identities=14% Similarity=0.158 Sum_probs=104.1
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK 183 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~ 183 (368)
+..|++... ....+.+||+.+++....-... .....+.+.|. +.+-++. .. ....+.+++.+++.....-
T Consensus 85 g~~l~~~~~-~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~d--g~~l~~~-~~--~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 85 GKQVYVTNM-ASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPD--GKKLYVT-NN--GDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp SSEEEEEET-TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTT--SSEEEEE-ET--TTTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEC-CCCEEEEEECCCCeEEEEEeCC----CCcceEEECCC--CCEEEEE-eC--CCCEEEEEECCCCcEEEEE
Confidence 334444432 4578999999998776542221 12345667762 3333222 21 3568889998887654332
Q ss_pred ccCCCCCceeeeccceEEEeCCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeE-EEEEE--
Q 043460 184 VSVKPRRPVSFYVLQSVYSRGGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGAL-NYASR-- 257 (368)
Q Consensus 184 ~~~~~~~p~~~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L-~~~~~-- 257 (368)
.. ...+... ...- +|. +|.... ++.|..+|+.+.+....+..... ...+.. .+|+. ++...
T Consensus 155 ~~--~~~~~~~----~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 155 SV--GRSPKGI----AVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA------PSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp EC--CSSEEEE----EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE------EEEEEECTTSSEEEEEEECS
T ss_pred ec--CCCcceE----EECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCC------ccceEECCCCCEEEEEecCc
Confidence 11 1111111 1222 454 444433 57899999999876534443211 112333 35654 44444
Q ss_pred CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEEC
Q 043460 258 NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHL 335 (368)
Q Consensus 258 ~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl 335 (368)
.+..+.+|-++.. ..+..+.... ...-+.+.+++..+++. .+..+..||+
T Consensus 222 ~~~~v~~~d~~~~-------------------~~~~~~~~~~---------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 222 YFNTVSMIDTGTN-------------------KITARIPVGP---------DPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp SCCEEEEEETTTT-------------------EEEEEEECCS---------SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCCcEEEEECCCC-------------------eEEEEEecCC---------CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 4678888876542 2333443211 12335677888888776 4678999999
Q ss_pred CCCeEEEe
Q 043460 336 KTNKMELF 343 (368)
Q Consensus 336 ~t~~~~~v 343 (368)
++++....
T Consensus 274 ~~~~~~~~ 281 (391)
T 1l0q_A 274 ATNTITAT 281 (391)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEE
Confidence 99987653
No 47
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=90.55 E-value=8.2 Score=33.61 Aligned_cols=206 Identities=8% Similarity=0.022 Sum_probs=101.8
Q ss_pred CcEEEEeecCCCeeEEEEccc--CccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC-ce
Q 043460 104 NGLILLGSSLSKHRYYVCNPL--TKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT-WI 180 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~--T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~-W~ 180 (368)
+..|.+... ....+.+|+.- +++...+...+... ....+.++|. +.+ ++.... ....+.+|+..++. .+
T Consensus 49 g~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~d--g~~-l~~~~~--~~~~i~~~d~~~~~~~~ 120 (343)
T 1ri6_A 49 KRYLYVGVR-PEFRVLAYRIAPDDGALTFAAESALPG--SLTHISTDHQ--GQF-VFVGSY--NAGNVSVTRLEDGLPVG 120 (343)
T ss_dssp SSEEEEEET-TTTEEEEEEECTTTCCEEEEEEEECSS--CCSEEEECTT--SSE-EEEEET--TTTEEEEEEEETTEEEE
T ss_pred CCEEEEeec-CCCeEEEEEecCCCCceeeccccccCC--CCcEEEEcCC--CCE-EEEEec--CCCeEEEEECCCCcccc
Confidence 333444432 23567776654 66665443222111 3456777773 344 222221 24467777774332 12
Q ss_pred eccccCCCCCceeeeccceEEEeCCe-EEEEE-eCCeEEEEEcCC-CeEEEEE----eCCCCCCCCCCceeEEe-eCCe-
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSRGGI-LYNLT-YRSTILRYNIEA-LSEAEII----EVPDKNNHPCDSEVIGL-CKGA- 251 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~~G~-lywl~-~~~~il~fD~~~-~~~~~~~----~lP~~~~~~~~~~~l~~-~~G~- 251 (368)
..........+. .-.+.- +|. +|... ..+.|..||+.+ .+..... ..+.. .. ...+.. .+|+
T Consensus 121 ~~~~~~~~~~~~----~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~pdg~~ 191 (343)
T 1ri6_A 121 VVDVVEGLDGCH----SANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG--AG--PRHMVFHPNEQY 191 (343)
T ss_dssp EEEEECCCTTBC----CCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT--CC--EEEEEECTTSSE
T ss_pred ccccccCCCCce----EEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC--CC--cceEEECCCCCE
Confidence 221110000011 112222 554 55554 378899999987 6665221 22221 11 122333 3666
Q ss_pred EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCe
Q 043460 252 LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDM 329 (368)
Q Consensus 252 L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 329 (368)
|++....+..+.+|.++...+ .+.....+.. +...........-+.+.+++..+|+. ....
T Consensus 192 l~~~~~~~~~i~~~~~~~~~g---------------~~~~~~~~~~--~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 192 AYCVNELNSSVDVWELKDPHG---------------NIECVQTLDM--MPENFSDTRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp EEEEETTTTEEEEEESSCTTS---------------CCEEEEEEEC--SCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEEecCCCC---------------cEEEEeeccc--cCccccccCCccceEECCCCCEEEEEecCCCE
Confidence 555555678899999976444 5555444431 11110000123346678888888766 4578
Q ss_pred EEEEECC--CCeEEEe
Q 043460 330 IYRYHLK--TNKMELF 343 (368)
Q Consensus 330 ~~~ydl~--t~~~~~v 343 (368)
+..||++ +++.+.+
T Consensus 255 i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKE 270 (343)
T ss_dssp EEEEEECTTSCCEEEE
T ss_pred EEEEEEcCCCCceEEe
Confidence 9999998 5555544
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=90.50 E-value=9.9 Score=34.51 Aligned_cols=136 Identities=11% Similarity=0.104 Sum_probs=75.3
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....+.|||..+++...+-... .......+.+.|. +.+ +.+.. ....+.+|+..++.-...-....
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~--~~~--l~~~~--~dg~i~iwd~~~~~~~~~~~~~~------ 176 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETD--ESTYVASVKWSHD--GSF--LSVGL--GNGLVDIYDVESQTKLRTMAGHQ------ 176 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECC--TTCCEEEEEECTT--SSE--EEEEE--TTSCEEEEETTTCCEEEEECCCS------
T ss_pred CCCeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCC--CCE--EEEEC--CCCeEEEEECcCCeEEEEecCCC------
Confidence 5678999999999876654332 1123345667662 333 22222 24578899988775332211000
Q ss_pred eeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEEEECCCeEEEEEEcc
Q 043460 194 FYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 194 ~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~IW~l~~ 269 (368)
..-.++.. +|.+...+. ++.|..+|+.+..-. ...+.... .. ...+... +|.+.+....+..+.||-+..
T Consensus 177 -~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~-~~--v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 177 -ARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQ-IGTLQGHS-SE--VCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp -SCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCE-EEEEECCS-SC--EEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred -CceEEEEE-CCCEEEEEcCCCCEEEEecccCcce-eeEEcCCC-CC--eeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 01114555 555444444 788999999854332 22221111 11 1223333 677777777788999998876
No 49
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=90.40 E-value=8.7 Score=33.70 Aligned_cols=204 Identities=9% Similarity=0.035 Sum_probs=109.3
Q ss_pred EEecCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCC-----CCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEE
Q 043460 99 LIDCCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDV-----LASPPALAFHPCDSSHYKIIRFLRARMDPEVDIF 172 (368)
Q Consensus 99 ~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~-----~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vy 172 (368)
.++..++.+++... ....+.++|+.|++... ++...... .....++.++|. +++ ++.... .....+.++
T Consensus 95 ~~s~dg~~l~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~-l~~~~~-~~~~~i~~~ 169 (353)
T 3vgz_A 95 TINNTTQTLWFGNT-VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA--TNT-VYISGI-GKESVIWVV 169 (353)
T ss_dssp EEETTTTEEEEEET-TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT--TTE-EEEEEE-SSSCEEEEE
T ss_pred EECCCCCEEEEEec-CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC--CCE-EEEEec-CCCceEEEE
Confidence 34444555555543 45689999999988643 33321110 111345777773 344 332221 124568889
Q ss_pred eCCCCCceeccccCCCCCceeeeccceEEEeCCe-EEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CC
Q 043460 173 SSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGI-LYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KG 250 (368)
Q Consensus 173 ss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~-lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G 250 (368)
+.+++.=...-.. ....|. .-.+.- +|. +|.....+.|..+|+.+.+....+..+...... ....+... +|
T Consensus 170 d~~~~~~~~~~~~-~~~~~~----~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg 242 (353)
T 3vgz_A 170 DGGNIKLKTAIQN-TGKMST----GLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEH-FFINISLDTAR 242 (353)
T ss_dssp ETTTTEEEEEECC-CCTTCC----CCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCC-CEEEEEEETTT
T ss_pred cCCCCceEEEecC-CCCccc----eEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc-ccceEEECCCC
Confidence 9887653222110 000011 112333 454 555544778999999998776455654321111 01223333 55
Q ss_pred e-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eC
Q 043460 251 A-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SC 327 (368)
Q Consensus 251 ~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~ 327 (368)
+ |++.......+.+|-++. . + .+..+.... . .-+.+.++++.+|+. ..
T Consensus 243 ~~l~~~~~~~~~v~~~d~~~--~---------------~--~~~~~~~~~---~-------~~~~~s~dg~~l~v~~~~~ 293 (353)
T 3vgz_A 243 QRAFITDSKAAEVLVVDTRN--G---------------N--ILAKVAAPE---S-------LAVLFNPARNEAYVTHRQA 293 (353)
T ss_dssp TEEEEEESSSSEEEEEETTT--C---------------C--EEEEEECSS---C-------CCEEEETTTTEEEEEETTT
T ss_pred CEEEEEeCCCCEEEEEECCC--C---------------c--EEEEEEcCC---C-------ceEEECCCCCEEEEEECCC
Confidence 4 655555567788776543 2 2 223333211 1 115678888877776 46
Q ss_pred CeEEEEECCCCeEEEe
Q 043460 328 DMIYRYHLKTNKMELF 343 (368)
Q Consensus 328 ~~~~~ydl~t~~~~~v 343 (368)
..+..+|+++.+....
T Consensus 294 ~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 294 GKVSVIDAKSYKVVKT 309 (353)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCeEEEE
Confidence 7899999999886543
No 50
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=90.00 E-value=9.7 Score=33.63 Aligned_cols=189 Identities=11% Similarity=0.056 Sum_probs=98.5
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....+.|||..++....+-.... .......+.+.+. ...-.++... ....+.+|+..++.|...........+.
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~v- 104 (379)
T 3jrp_A 31 SDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHP-KFGTILASCS---YDGKVLIWKEENGRWSQIAVHAVHSASV- 104 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCG-GGCSEEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCE-
T ss_pred CCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCC-CCCCEEEEec---cCCEEEEEEcCCCceeEeeeecCCCcce-
Confidence 45577888876333322211110 1112334555542 1122233222 2456889999888876654321111011
Q ss_pred eeccceEEEe-C--CeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--------------CCeEEEE
Q 043460 194 FYVLQSVYSR-G--GILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--------------KGALNYA 255 (368)
Q Consensus 194 ~~~~~~v~~~-~--G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--------------~G~L~~~ 255 (368)
.++.+. + |.+...+. ++.|..+|+.+..-.....+...... ...+... +|.+.++
T Consensus 105 ----~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (379)
T 3jrp_A 105 ----NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG---VNSASWAPATIEEDGEHNGTKESRKFVT 177 (379)
T ss_dssp ----EEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC---EEEEEECCCC----------CTTCEEEE
T ss_pred ----EEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc---eEEEEEcCccccccccccCCCCCCEEEE
Confidence 122220 2 44444444 77889999888632212222111110 1122222 5788778
Q ss_pred EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecC---CCEEEEe-eCCeEE
Q 043460 256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPN---SDIIFLG-SCDMIY 331 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~-~~~~~~ 331 (368)
...+..+.||-+..... .|.....+.... ..+.-+.+.++ +..++.. .+..+.
T Consensus 178 ~~~dg~i~i~d~~~~~~---------------~~~~~~~~~~h~--------~~v~~~~~sp~~~~~~~l~s~~~dg~i~ 234 (379)
T 3jrp_A 178 GGADNLVKIWKYNSDAQ---------------TYVLESTLEGHS--------DWVRDVAWSPTVLLRSYLASVSQDRTCI 234 (379)
T ss_dssp EETTSCEEEEEEETTTT---------------EEEEEEEECCCS--------SCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred EeCCCeEEEEEecCCCc---------------ceeeEEEEeccc--------CcEeEEEECCCCCCCCeEEEEeCCCEEE
Confidence 88888999999987655 677766654211 22344566776 5555555 466788
Q ss_pred EEECCCC
Q 043460 332 RYHLKTN 338 (368)
Q Consensus 332 ~ydl~t~ 338 (368)
.||+++.
T Consensus 235 iwd~~~~ 241 (379)
T 3jrp_A 235 IWTQDNE 241 (379)
T ss_dssp EEEESST
T ss_pred EEeCCCC
Confidence 8998886
No 51
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=89.66 E-value=11 Score=33.75 Aligned_cols=198 Identities=8% Similarity=-0.021 Sum_probs=100.6
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCc-CCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKARE-DVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~-~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
+.++.++... ....+.|||..+++......... .+......+.+.|. +.+ ++. .. ....+.+++.+++.-.
T Consensus 91 s~d~~l~~~s--~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~-l~s-gs--~d~~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 91 VGERGILVAS--DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQ-AVS-GS--KDICIKVWDLAQQVVL 162 (344)
T ss_dssp ETTTEEEEEE--TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSE-EEE-EE--TTSCEEEEETTTTEEE
T ss_pred eCCCeEEEEE--CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCE-EEE-Ee--CCCeEEEEECCCCcEE
Confidence 3456666554 66789999999987655433221 12223445667662 233 222 22 2456888888876422
Q ss_pred eccccCCCCCceeeeccceEEE-eCCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEE
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYS-RGGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYA 255 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~-~~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~ 255 (368)
..-..... +. .++.+ .+|. +..-+. ++.|..+|+.+.+-...+..+..... ...+... ++.+.+.
T Consensus 163 ~~~~~h~~--~V-----~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 163 SSYRAHAA--QV-----TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYL---PTSLAWHPQQSEVFVF 232 (344)
T ss_dssp EEECCCSS--CE-----EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCC---EEEEEECSSCTTEEEE
T ss_pred EEEcCcCC--ce-----EEEEecCCCCCceeeeccccccccccccccceeeeeecceeecc---ceeeeecCCCCcceEE
Confidence 11100000 00 01221 0332 333333 67899999988765423332221111 1223322 4567777
Q ss_pred EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCC-EEEEe-eCCeEEEE
Q 043460 256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSD-IIFLG-SCDMIYRY 333 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~~~~~~y 333 (368)
...+..+.||-+...+. +.++.... ..+.-+.+.+++. +|.-. .+..+..+
T Consensus 233 g~~dg~v~~wd~~~~~~-------------------~~~~~~h~--------~~v~~v~fsp~g~~~lasgs~D~~i~vw 285 (344)
T 4gqb_B 233 GDENGTVSLVDTKSTSC-------------------VLSSAVHS--------QCVTGLVFSPHSVPFLASLSEDCSLAVL 285 (344)
T ss_dssp EETTSEEEEEESCC--C-------------------CEEEECCS--------SCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred eccCCcEEEEECCCCcE-------------------EEEEcCCC--------CCEEEEEEccCCCeEEEEEeCCCeEEEE
Confidence 77788999997665321 12222110 2234456677664 33333 55678888
Q ss_pred ECCCCeEEEec
Q 043460 334 HLKTNKMELFS 344 (368)
Q Consensus 334 dl~t~~~~~v~ 344 (368)
|+++++..++.
T Consensus 286 d~~~~~~~~~~ 296 (344)
T 4gqb_B 286 DSSLSELFRSQ 296 (344)
T ss_dssp CTTCCEEEEEC
T ss_pred ECCCCcEEEEc
Confidence 99888876543
No 52
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=89.49 E-value=16 Score=35.27 Aligned_cols=203 Identities=10% Similarity=0.053 Sum_probs=107.0
Q ss_pred EEEEeecCCCeeEEEEcccCcccee-cCCCC--cC-----CCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC
Q 043460 106 LILLGSSLSKHRYYVCNPLTKQCVA-IPKAR--ED-----VLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK 177 (368)
Q Consensus 106 lll~~~~~~~~~~~v~NP~T~~~~~-lP~~~--~~-----~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~ 177 (368)
+|.+... ....+.|||..|++... ++-.. .. ......++.+.|. +.+-++... ..-.+.+++..++
T Consensus 239 ~l~v~~~-~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~--~~~~~vs~~---~~g~i~vvd~~~~ 312 (543)
T 1nir_A 239 YTIAGAY-WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE--HPEFIVNVK---ETGKVLLVNYKDI 312 (543)
T ss_dssp EEEEEEE-ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS--SSEEEEEET---TTTEEEEEECTTS
T ss_pred EEEEEEc-cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC--CCEEEEEEC---CCCeEEEEEecCC
Confidence 4444432 35678888888877554 23211 00 0012234455542 333333322 3456777777664
Q ss_pred CceeccccCCCCCceeeeccceEEEeCCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeC-CeEEE
Q 043460 178 TWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCK-GALNY 254 (368)
Q Consensus 178 ~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~-G~L~~ 254 (368)
.--..........|.. -+..- +|...+.+. .+.|.++|..+.+....++........ ....+...+ |.+++
T Consensus 313 ~~l~~~~i~~~~~~~~----~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g-~g~~~~~p~~g~~~~ 386 (543)
T 1nir_A 313 DNLTVTSIGAAPFLHD----GGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG-RGANFVHPKYGPVWS 386 (543)
T ss_dssp SSCEEEEEECCSSCCC----EEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT-TCEEEEETTTEEEEE
T ss_pred CcceeEEeccCcCccC----ceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC-CCcccCCCCCccEEE
Confidence 3211100000000111 12222 566333333 678999999998876455542211110 012222334 66655
Q ss_pred EEE-CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------
Q 043460 255 ASR-NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS------- 326 (368)
Q Consensus 255 ~~~-~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------- 326 (368)
... .+.++.+|-++..+. ....|..+.++....- ....+.+++++..++...
T Consensus 387 s~~~~d~~V~v~d~~~~~~------------~~~~~~~v~~l~~~g~--------~~~~v~~~pdg~~l~v~~~~~~~~~ 446 (543)
T 1nir_A 387 TSHLGDGSISLIGTDPKNH------------PQYAWKKVAELQGQGG--------GSLFIKTHPKSSHLYVDTTFNPDAR 446 (543)
T ss_dssp EEBSSSSEEEEEECCTTTC------------TTTBTSEEEEEECSCS--------CCCCEECCTTCCEEEECCTTCSSHH
T ss_pred eccCCCceEEEEEeCCCCC------------chhcCeEEEEEEcCCC--------CceEEEcCCCCCcEEEecCCCCCcc
Confidence 554 567999999876421 1116999988874321 123367899999999873
Q ss_pred -CCeEEEEECCCCeE
Q 043460 327 -CDMIYRYHLKTNKM 340 (368)
Q Consensus 327 -~~~~~~ydl~t~~~ 340 (368)
...+..||.+|.+.
T Consensus 447 ~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 447 ISQSVAVFDLKNLDA 461 (543)
T ss_dssp HHTCEEEEETTCTTS
T ss_pred cCceEEEEECCCCCC
Confidence 55899999998874
No 53
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=89.34 E-value=11 Score=33.11 Aligned_cols=204 Identities=10% Similarity=0.051 Sum_probs=103.3
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC--CCcEEEEEeCCCCCc
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR--MDPEVDIFSSENKTW 179 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~--~~~~~~vyss~~~~W 179 (368)
+.+|-|++... ....++++||.+++...+.... .....++.+++. +. ++...... ....+.+|+.+++.-
T Consensus 53 ~~~g~l~~~~~-~~~~i~~~d~~~~~~~~~~~~~---~~~~~~i~~~~d--g~--l~v~~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 53 DRQGQLFLLDV-FEGNIFKINPETKEIKRPFVSH---KANPAAIKIHKD--GR--LFVCYLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp CTTSCEEEEET-TTCEEEEECTTTCCEEEEEECS---SSSEEEEEECTT--SC--EEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CCCCCEEEEEC-CCCEEEEEeCCCCcEEEEeeCC---CCCcceEEECCC--Cc--EEEEeCCCCCCCceEEEEeCCCCEE
Confidence 34666655443 4568999999999877653211 113446777762 22 33222110 114678888887765
Q ss_pred eeccccCCCCCceeeeccceEEE-eCCeEEEEEe-------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCC
Q 043460 180 ITRKVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKG 250 (368)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G 250 (368)
+........ .. .-..+.+ .+|.+|+... ...|..+|+.+.+.. .+.-. ... ...++. .+|
T Consensus 125 ~~~~~~~~~---~~--~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~--~~~---~~~i~~~~dg 193 (333)
T 2dg1_A 125 QDIIEDLST---AY--CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQN--ISV---ANGIALSTDE 193 (333)
T ss_dssp EEEECSSSS---CC--CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEE--ESS---EEEEEECTTS
T ss_pred EEEEccCcc---CC--cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecC--CCc---ccceEECCCC
Confidence 422110010 00 0112222 1677766553 257999999887766 33211 000 112333 366
Q ss_pred e-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEE-EeeeccccccCccccceEEEEEecCCCEEEEe--e
Q 043460 251 A-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKH-SICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--S 326 (368)
Q Consensus 251 ~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~ 326 (368)
+ |++.......+.+|.++..+. ...... .+... +... ....-+.+.+++. +++. .
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~---------------~~~~~~~~~~~~-~~~~----~~~~~i~~d~~G~-l~v~~~~ 252 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGV---------------TIQPFGATIPYY-FTGH----EGPDSCCIDSDDN-LYVAMYG 252 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSS---------------SEEEEEEEEEEE-CCSS----SEEEEEEEBTTCC-EEEEEET
T ss_pred CEEEEEeCCCCeEEEEEecCCCc---------------CcccccceEEEe-cCCC----CCCCceEECCCCC-EEEEEcC
Confidence 5 666655556777777754322 222211 11111 1100 1122345666666 4444 3
Q ss_pred CCeEEEEECCCCeEEEecc
Q 043460 327 CDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 327 ~~~~~~ydl~t~~~~~v~~ 345 (368)
...+.+||++.+.++.+..
T Consensus 253 ~~~v~~~d~~g~~~~~~~~ 271 (333)
T 2dg1_A 253 QGRVLVFNKRGYPIGQILI 271 (333)
T ss_dssp TTEEEEECTTSCEEEEEEC
T ss_pred CCEEEEECCCCCEEEEEEc
Confidence 5689999998777776654
No 54
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=89.33 E-value=12 Score=33.57 Aligned_cols=192 Identities=8% Similarity=0.014 Sum_probs=103.9
Q ss_pred EEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecccc
Q 043460 106 LILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVS 185 (368)
Q Consensus 106 lll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~ 185 (368)
+|+... ....+.|||..+++....-.... .......+.+.|. +-+.+.... ....+.+++.+++........
T Consensus 88 ~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~---~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~ 159 (383)
T 3ei3_B 88 TVAVGS--KGGDIILWDYDVQNKTSFIQGMG-PGDAITGMKFNQF---NTNQLFVSS--IRGATTLRDFSGSVIQVFAKT 159 (383)
T ss_dssp EEEEEE--BTSCEEEEETTSTTCEEEECCCS-TTCBEEEEEEETT---EEEEEEEEE--TTTEEEEEETTSCEEEEEECC
T ss_pred EEEEEc--CCCeEEEEeCCCcccceeeecCC-cCCceeEEEeCCC---CCCEEEEEe--CCCEEEEEECCCCceEEEecc
Confidence 444443 46688999999887665432210 1122345566551 222333332 356788898886554443321
Q ss_pred CCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCe-EEEEEECCCeE
Q 043460 186 VKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGA-LNYASRNQSTL 262 (368)
Q Consensus 186 ~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~-L~~~~~~~~~~ 262 (368)
.... .....-...- +|.....+. ++.|..+|+..+... .+...... ...+.. .+|. +.+....+..+
T Consensus 160 ~~~~---~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~h~~~-----v~~~~~~~~~~~~l~s~~~d~~i 229 (383)
T 3ei3_B 160 DSWD---YWYCCVDVSV-SRQMLATGDSTGRLLLLGLDGHEIF-KEKLHKAK-----VTHAEFNPRCDWLMATSSVDATV 229 (383)
T ss_dssp CCSS---CCEEEEEEET-TTTEEEEEETTSEEEEEETTSCEEE-EEECSSSC-----EEEEEECSSCTTEEEEEETTSEE
T ss_pred CCCC---CCeEEEEECC-CCCEEEEECCCCCEEEEECCCCEEE-EeccCCCc-----EEEEEECCCCCCEEEEEeCCCEE
Confidence 1000 0001112222 455444444 788999999766555 44432211 123333 3566 77777788899
Q ss_pred EEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEec-CCCEEEEe-eCCeEEEEECCCCe
Q 043460 263 LIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHP-NSDIIFLG-SCDMIYRYHLKTNK 339 (368)
Q Consensus 263 ~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~~~~ydl~t~~ 339 (368)
.||-+...+. .-..+..+... ..+.-+.+.+ ++..++.. .+..+..||+++.+
T Consensus 230 ~iwd~~~~~~---------------~~~~~~~~~~~---------~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 230 KLWDLRNIKD---------------KNSYIAEMPHE---------KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp EEEEGGGCCS---------------TTCEEEEEECS---------SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred EEEeCCCCCc---------------ccceEEEecCC---------CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 9999987532 22233333211 2344466777 77777666 56789999998765
No 55
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=89.02 E-value=13 Score=33.78 Aligned_cols=193 Identities=14% Similarity=0.086 Sum_probs=100.6
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCCc--CCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKARE--DVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~--~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
+|.+++... ....+.+||+.+++.....+... ........+.+.+. . +++.... ....+.+|+.+++.-..
T Consensus 133 ~~~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~~~s~~--~d~~v~~~d~~~~~~~~ 205 (433)
T 3bws_A 133 NTRLAIPLL-EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH---N-ELWVSQM--QANAVHVFDLKTLAYKA 205 (433)
T ss_dssp SSEEEEEBT-TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG---T-EEEEEEG--GGTEEEEEETTTCCEEE
T ss_pred CCeEEEEeC-CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC---C-EEEEEEC--CCCEEEEEECCCceEEE
Confidence 676666653 55679999999998776433321 11112234555441 2 2333332 24678899988765432
Q ss_pred ccccCCCCCceeeeccceEEEeCCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCe-EEEEEE
Q 043460 182 RKVSVKPRRPVSFYVLQSVYSRGGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGA-LNYASR 257 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~-L~~~~~ 257 (368)
.-.... ..+.. -...- +|. +|.... ++.|..+|+.+.+....++.... ...+.. .+|+ |++...
T Consensus 206 ~~~~~~-~~~~~----~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 206 TVDLTG-KWSKI----LLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL------PRGLLLSKDGKELYIAQF 273 (433)
T ss_dssp EEECSS-SSEEE----EEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE------EEEEEECTTSSEEEEEEE
T ss_pred EEcCCC-CCeeE----EEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC------ceEEEEcCCCCEEEEEEC
Confidence 211000 00111 11222 443 555543 68899999988766523322111 122333 3564 444443
Q ss_pred -------CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCC
Q 043460 258 -------NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCD 328 (368)
Q Consensus 258 -------~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 328 (368)
.+..+.+|-+... + .+..+.... ...-+.+.++++.+++. .+.
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~-----------------~--~~~~~~~~~---------~~~~~~~~~~g~~l~~~~~~~~ 325 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKE-----------------K--LIDTIGPPG---------NKRHIVSGNTENKIYVSDMCCS 325 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTT-----------------E--EEEEEEEEE---------CEEEEEECSSTTEEEEEETTTT
T ss_pred CCCccccCCCeEEEEECCCC-----------------c--EEeeccCCC---------CcceEEECCCCCEEEEEecCCC
Confidence 2346778876642 1 112222111 12335667777767665 567
Q ss_pred eEEEEECCCCeEEEe
Q 043460 329 MIYRYHLKTNKMELF 343 (368)
Q Consensus 329 ~~~~ydl~t~~~~~v 343 (368)
.+..||+++++....
T Consensus 326 ~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 326 KIEVYDLKEKKVQKS 340 (433)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEEECCCCcEEEE
Confidence 899999998876543
No 56
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=88.64 E-value=12 Score=32.82 Aligned_cols=192 Identities=14% Similarity=0.078 Sum_probs=95.3
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc----------
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK---------- 183 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~---------- 183 (368)
....+.+||..+++....-............+.+.|. +.+ ++... ....+.+|+.+++.-...-
T Consensus 136 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~-l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 209 (366)
T 3k26_A 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL--GEK-IMSCG---MDHSLKLWRINSKRMMNAIKESYDYNPNK 209 (366)
T ss_dssp TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT--SSE-EEEEE---TTSCEEEEESCSHHHHHHHHHHHTCCGGG
T ss_pred CCCeEEEEEeecCeEEEEecccccccCceeEEEECCC--CCE-EEEec---CCCCEEEEECCCCccccccceeEEecCCC
Confidence 5667889998887655432110111223445667762 232 33222 2457889998875421100
Q ss_pred ccCCCCC-----c-eee---ecc--ceEEEeCCeEEEEEe-CCeEEEEEcCCCeE------------E--EEEeCCCCCC
Q 043460 184 VSVKPRR-----P-VSF---YVL--QSVYSRGGILYNLTY-RSTILRYNIEALSE------------A--EIIEVPDKNN 237 (368)
Q Consensus 184 ~~~~~~~-----p-~~~---~~~--~~v~~~~G~lywl~~-~~~il~fD~~~~~~------------~--~~~~lP~~~~ 237 (368)
....... + ... ... .++.. .|.+...+. ++.|..+|+.+..- . .....+....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 288 (366)
T 3k26_A 210 TNRPFISQKIHFPDFSTRDIHRNYVDCVRW-LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI 288 (366)
T ss_dssp CSSCCCCEEECCCSEEECSSCSSCCCEEEE-ETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS
T ss_pred CcccccceeeccCccccccCCcceEEEEEE-cCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE
Confidence 0000000 0 000 111 14555 455333333 78899999887533 1 0111111110
Q ss_pred CCCCceeEEeeC--CeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEE
Q 043460 238 HPCDSEVIGLCK--GALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNI 315 (368)
Q Consensus 238 ~~~~~~~l~~~~--G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~ 315 (368)
.......+ |.+.++...+..+.||.++.... .......+....-. ..+.-+.+
T Consensus 289 ----~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~---------------~~~~~~~~~~~~~~------~~v~~~~~ 343 (366)
T 3k26_A 289 ----WYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP---------------HKAKCTTLTHHKCG------AAIRQTSF 343 (366)
T ss_dssp ----SCCCCEECTTSSEEEEECTTSCEEEEECCSSSG---------------GGCEEEEECCTTCC------SCEEEEEE
T ss_pred ----EEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC---------------ccccceEEcccccC------CceEEEEe
Confidence 01111234 77777777788999999887532 22233333321101 23445667
Q ss_pred ecCCCEEEEe-eCCeEEEEECCC
Q 043460 316 HPNSDIIFLG-SCDMIYRYHLKT 337 (368)
Q Consensus 316 ~~~~~~v~~~-~~~~~~~ydl~t 337 (368)
.+++..++.. .++.+..||+.|
T Consensus 344 s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 344 SRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCCeEEEEeCCCEEEEEEecC
Confidence 7788877766 566888998864
No 57
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=88.46 E-value=12 Score=32.68 Aligned_cols=204 Identities=10% Similarity=0.045 Sum_probs=96.7
Q ss_pred CCeeEEEEcccCcc--ceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCc
Q 043460 114 SKHRYYVCNPLTKQ--CVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRP 191 (368)
Q Consensus 114 ~~~~~~v~NP~T~~--~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p 191 (368)
....+.+||..+++ ...+.............+.+.+.-+.+-+.+.... ....+.+|+.+++.=..... .. . +
T Consensus 137 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~-~~-~-~ 211 (357)
T 3i2n_A 137 RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY--DNGDIKLFDLRNMALRWETN-IK-N-G 211 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE--TTSEEEEEETTTTEEEEEEE-CS-S-C
T ss_pred CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc--cCCeEEEEECccCceeeecC-CC-C-c
Confidence 56788999998876 33333322111112223343221122223333333 24578999988875322110 00 0 0
Q ss_pred eeeeccceEEEe----CCeEEEEEe-CCeEEEEEcCCCeEEEEEe---CCCCCCCCCCceeEEee-CCe-EEEEEECCCe
Q 043460 192 VSFYVLQSVYSR----GGILYNLTY-RSTILRYNIEALSEAEIIE---VPDKNNHPCDSEVIGLC-KGA-LNYASRNQST 261 (368)
Q Consensus 192 ~~~~~~~~v~~~----~G~lywl~~-~~~il~fD~~~~~~~~~~~---lP~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~ 261 (368)
. .++.+. +|.....+. ++.|..+|+.+.+....+. +.... .. ...+... +|. +.+....+..
T Consensus 212 v-----~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~--v~~~~~~~~~~~~l~~~~~dg~ 283 (357)
T 3i2n_A 212 V-----CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK-ST--VWQVRHLPQNRELFLTAGGAGG 283 (357)
T ss_dssp E-----EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS-SC--EEEEEEETTEEEEEEEEETTSE
T ss_pred e-----EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc-CC--EEEEEECCCCCcEEEEEeCCCc
Confidence 0 123331 233333333 7788888887654321111 11111 11 2233333 566 6666667889
Q ss_pred EEEEEEccCCCCCCCCCCc-cCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEE-e-eCCeEEEEECCCC
Q 043460 262 LLIWQLDDHRHHSNSHGSN-KAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFL-G-SCDMIYRYHLKTN 338 (368)
Q Consensus 262 ~~IW~l~~~~~~~~~~~~~-~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~~~~ydl~t~ 338 (368)
+.||.+....... ....+ ...+....+..+..+.... ..+.-+++.+++..+++ . .+..+..||+++.
T Consensus 284 i~iwd~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 284 LHLWKYEYPIQRS-KKDSEGIEMGVAGSVSLLQNVTLST--------QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEEECCSCC---CCTTSCCCCCCCEEEEEEEEECCS--------SCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEeecCCCcccc-cccCCCCccccccccceeeccccCC--------CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 9999998642100 00000 0011112455555544211 23444667788777764 3 5678999998764
Q ss_pred e
Q 043460 339 K 339 (368)
Q Consensus 339 ~ 339 (368)
+
T Consensus 355 ~ 355 (357)
T 3i2n_A 355 N 355 (357)
T ss_dssp -
T ss_pred c
Confidence 3
No 58
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=87.93 E-value=16 Score=33.53 Aligned_cols=183 Identities=10% Similarity=0.033 Sum_probs=96.9
Q ss_pred eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeee
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFY 195 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~ 195 (368)
..+++||..|++.+.+...+. ....+.+.|. +.+ ++..........+.+++.+++..+..... . ......
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~----~~~~~~~spd--g~~-la~~~~~~g~~~i~~~d~~~~~~~~l~~~-~-~~~~~~- 272 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPR----HNGAPAFSPD--GSK-LAFALSKTGSLNLYVMDLASGQIRQVTDG-R-SNNTEP- 272 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSS----CEEEEEECTT--SSE-EEEEECTTSSCEEEEEETTTCCEEECCCC-S-SCEEEE-
T ss_pred cEEEEEECCCCcEEEeecCCC----cccCEEEcCC--CCE-EEEEEecCCCceEEEEECCCCCEEeCcCC-C-Ccccce-
Confidence 589999999998877654331 2335566662 333 33232222456788889988876544311 0 000010
Q ss_pred ccceEEEeCCe-EEEEEeC---CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCe-EEEEEECCCeEEEEEEcc
Q 043460 196 VLQSVYSRGGI-LYNLTYR---STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGA-LNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 196 ~~~~v~~~~G~-lywl~~~---~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~-L~~~~~~~~~~~IW~l~~ 269 (368)
...- +|. |+..... ..|..+|+.+.+.. .+.... .. ...+.. .+|+ |++...++....|+.++-
T Consensus 273 ---~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~---~~--~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 273 ---TWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG---SQ--NQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp ---EECT-TSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS---SE--EEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred ---EECC-CCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCC---Cc--ccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 1111 454 5544432 26888899887755 332211 10 112232 3665 444444433444444444
Q ss_pred CCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCC---eEEEEECCCCeEEEecc
Q 043460 270 HRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCD---MIYRYHLKTNKMELFST 345 (368)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~---~~~~ydl~t~~~~~v~~ 345 (368)
.++ +... +.... ...-+.+.+++..|++. ... .++.+|+++++.+++..
T Consensus 343 ~~~---------------~~~~---l~~~~---------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 343 ATG---------------GVQV---LSSTF---------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp TTC---------------CEEE---CCCSS---------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred CCC---------------CEEE---ecCCC---------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence 323 3321 21111 12335678888877665 333 79999999999888876
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=87.69 E-value=16 Score=33.05 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=51.0
Q ss_pred CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEE-eCCe-EEEEEe-CCeEEEEEcCCCeE--EEEEeCCCCCCCCC
Q 043460 166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYS-RGGI-LYNLTY-RSTILRYNIEALSE--AEIIEVPDKNNHPC 240 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~-~~G~-lywl~~-~~~il~fD~~~~~~--~~~~~lP~~~~~~~ 240 (368)
...+.+|+.+++.-..... ... . ..-.++.+ .+|. +...+. ++.|..+|+.+.+- . .+..... ..
T Consensus 268 dg~i~i~d~~~~~~~~~~~--~~~---~-~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~--~~- 337 (420)
T 3vl1_A 268 SGVITVHNVFSKEQTIQLP--SKF---T-CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG-EFLINEG--TP- 337 (420)
T ss_dssp TSCEEEEETTTCCEEEEEC--CTT---S-SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE-EEEESTT--SC-
T ss_pred CCeEEEEECCCCceeEEcc--ccc---C-CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh-hhhccCC--CC-
Confidence 4568899988765322210 000 0 00012222 0343 333333 78899999988643 3 3332211 11
Q ss_pred CceeEEeeCCeEEEEEECCCeEEEEEEccC
Q 043460 241 DSEVIGLCKGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 241 ~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
...+...+|.+.+....+..+.||.+...
T Consensus 338 -v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 338 -INNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -EEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred -ceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 22445568887766667889999999875
No 60
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=87.53 E-value=14 Score=35.59 Aligned_cols=146 Identities=8% Similarity=-0.032 Sum_probs=80.0
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK 183 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~ 183 (368)
+++++... ......+||..|++.+.+...+. ....++| .+.+-+...........+.+++.+++.++...
T Consensus 122 ~~~~~~s~--~~~~~~l~d~~~g~~~~l~~~~~------~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~ 191 (582)
T 3o4h_A 122 EAVVFTGA--TEDRVALYALDGGGLRELARLPG------FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD 191 (582)
T ss_dssp SCEEEEEE--CSSCEEEEEEETTEEEEEEEESS------CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCEEEC
T ss_pred CeEEEEec--CCCCceEEEccCCcEEEeecCCC------ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCceEee
Confidence 45666654 34455699999998887754331 4556666 23443333332223356888898899887654
Q ss_pred ccCCCCCceeeeccceEEEeCCeEEEEEe-CC--eEEEEEcCCCeEEEEEeCCCCCCCCCC---ceeE-EeeCCeEEEEE
Q 043460 184 VSVKPRRPVSFYVLQSVYSRGGILYNLTY-RS--TILRYNIEALSEAEIIEVPDKNNHPCD---SEVI-GLCKGALNYAS 256 (368)
Q Consensus 184 ~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~--~il~fD~~~~~~~~~~~lP~~~~~~~~---~~~l-~~~~G~L~~~~ 256 (368)
.. . .....-...= ||...+... .+ .|..+|+.+.+.. .+.-......... .... ...+|.+++..
T Consensus 192 ~~--~----~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~ 263 (582)
T 3o4h_A 192 SG--E----GSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVA 263 (582)
T ss_dssp CS--S----CEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEE
T ss_pred cC--C----CccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEE
Confidence 21 1 1111111222 666444443 34 7999999988776 4322111000000 0000 23478777777
Q ss_pred ECCCeEEEEEE
Q 043460 257 RNQSTLLIWQL 267 (368)
Q Consensus 257 ~~~~~~~IW~l 267 (368)
..+.+..||.+
T Consensus 264 ~~~g~~~l~~~ 274 (582)
T 3o4h_A 264 RREGRSAVFID 274 (582)
T ss_dssp EETTEEEEEET
T ss_pred EcCCcEEEEEE
Confidence 77778999998
No 61
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=87.04 E-value=14 Score=31.89 Aligned_cols=188 Identities=15% Similarity=0.083 Sum_probs=100.3
Q ss_pred CCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC--c
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT--W 179 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~--W 179 (368)
..|-+++... ....++++|+.|++..+ ++.... .........|. ++ ++.. ....+..|+. +|. |
T Consensus 3 ~~~~~lv~~~-~~~~v~~~d~~tG~~~w~~~~~~~---~~~~~~~~~pd--G~--ilvs----~~~~V~~~d~-~G~~~W 69 (276)
T 3no2_A 3 SPQHLLVGGS-GWNKIAIINKDTKEIVWEYPLEKG---WECNSVAATKA--GE--ILFS----YSKGAKMITR-DGRELW 69 (276)
T ss_dssp CCCEEEEECT-TCSEEEEEETTTTEEEEEEECCTT---CCCCEEEECTT--SC--EEEE----CBSEEEEECT-TSCEEE
T ss_pred CCCcEEEeeC-CCCEEEEEECCCCeEEEEeCCCcc---CCCcCeEECCC--CC--EEEe----CCCCEEEECC-CCCEEE
Confidence 3344444433 56788999999988665 333210 12234445552 22 3331 2456888888 564 7
Q ss_pred eeccccCCCCCceeeeccceEEEeCCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCC--CCceeEEeeCCeEEEE
Q 043460 180 ITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHP--CDSEVIGLCKGALNYA 255 (368)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~--~~~~~l~~~~G~L~~~ 255 (368)
+.... .. .. .......- +|.++.... ...++.||+..+... .+.+....... .........+|.+.++
T Consensus 70 ~~~~~---~~--~~-~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~-~~~~~~~~~~~~~~~~~v~~~~~G~~lv~ 141 (276)
T 3no2_A 70 NIAAP---AG--CE-MQTARILP-DGNALVAWCGHPSTILEVNMKGEVLS-KTEFETGIERPHAQFRQINKNKKGNYLVP 141 (276)
T ss_dssp EEECC---TT--CE-EEEEEECT-TSCEEEEEESTTEEEEEECTTSCEEE-EEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred EEcCC---CC--cc-ccccEECC-CCCEEEEecCCCCEEEEEeCCCCEEE-EEeccCCCCcccccccCceECCCCCEEEE
Confidence 76541 00 01 11223344 777766654 467899998666544 45544322111 0011223447777766
Q ss_pred EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEE
Q 043460 256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYH 334 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~yd 334 (368)
...+..+..|-.+ .+. .|+.... ... .. .....++++++.. ...+++.+|
T Consensus 142 ~~~~~~v~~~d~~-G~~---------------~w~~~~~----~~~--------~~-~~~~~~g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 142 LFATSEVREIAPN-GQL---------------LNSVKLS----GTP--------FS-SAFLDNGDCLVACGDAHCFVQLN 192 (276)
T ss_dssp ETTTTEEEEECTT-SCE---------------EEEEECS----SCC--------CE-EEECTTSCEEEECBTTSEEEEEC
T ss_pred ecCCCEEEEECCC-CCE---------------EEEEECC----CCc--------cc-eeEcCCCCEEEEeCCCCeEEEEe
Confidence 6666666666554 333 6765431 000 11 2345677877766 455899999
Q ss_pred CCCCeE
Q 043460 335 LKTNKM 340 (368)
Q Consensus 335 l~t~~~ 340 (368)
++|.++
T Consensus 193 ~~tG~~ 198 (276)
T 3no2_A 193 LESNRI 198 (276)
T ss_dssp TTTCCE
T ss_pred CcCCcE
Confidence 997765
No 62
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=86.91 E-value=14 Score=31.81 Aligned_cols=198 Identities=8% Similarity=0.010 Sum_probs=103.9
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceec-CCCCc-CCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAI-PKARE-DVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW 179 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~l-P~~~~-~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W 179 (368)
+.+|-+++.. ....+.|||..+++.... ..... ........+.+.|. +.+ ++. .. ....+.+|+.+++..
T Consensus 60 ~~~~~~l~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~-l~~-~~--~d~~i~~~d~~~~~~ 131 (337)
T 1gxr_A 60 SNPTRHVYTG--GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCT-LIV-GG--EASTLSIWDLAAPTP 131 (337)
T ss_dssp CSSSSEEEEE--CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSE-EEE-EE--SSSEEEEEECCCC--
T ss_pred ecCCcEEEEc--CCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--CCE-EEE-Ec--CCCcEEEEECCCCCc
Confidence 4455555554 367889999887653221 11100 11123345666662 232 222 22 246799999988875
Q ss_pred eeccccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEEE
Q 043460 180 ITRKVSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYAS 256 (368)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~ 256 (368)
...........+. .++.+. +|.....+. ++.|..+|+.+.+....+..... . ...+... +|...++.
T Consensus 132 ~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~---~--i~~~~~~~~~~~l~~~ 201 (337)
T 1gxr_A 132 RIKAELTSSAPAC-----YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD---G--ASCIDISNDGTKLWTG 201 (337)
T ss_dssp EEEEEEECSSSCE-----EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS---C--EEEEEECTTSSEEEEE
T ss_pred ceeeecccCCCce-----EEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC---c--eEEEEECCCCCEEEEE
Confidence 4433211110000 112220 444444443 67899999998765523322111 1 1233333 67777777
Q ss_pred ECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEEC
Q 043460 257 RNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHL 335 (368)
Q Consensus 257 ~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl 335 (368)
..+..+.+|-+.... .+..+... ....-+.+.+++..++.. .+..+..||+
T Consensus 202 ~~dg~i~~~d~~~~~-------------------~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 202 GLDNTVRSWDLREGR-------------------QLQQHDFT---------SQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp ETTSEEEEEETTTTE-------------------EEEEEECS---------SCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ecCCcEEEEECCCCc-------------------eEeeecCC---------CceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 777899999876531 22222211 123345667777777766 4667899999
Q ss_pred CCCeEEEecc
Q 043460 336 KTNKMELFST 345 (368)
Q Consensus 336 ~t~~~~~v~~ 345 (368)
++.+...+..
T Consensus 254 ~~~~~~~~~~ 263 (337)
T 1gxr_A 254 NKPDKYQLHL 263 (337)
T ss_dssp TSSCEEEECC
T ss_pred CCCCeEEEcC
Confidence 8887665543
No 63
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=86.66 E-value=13 Score=33.08 Aligned_cols=198 Identities=10% Similarity=0.050 Sum_probs=89.0
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC-ceeccccCCCCCce
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT-WITRKVSVKPRRPV 192 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~-W~~~~~~~~~~~p~ 192 (368)
....+.|||..++++..+-.... .......+.+.|. +.+ ++ ... ....+.+|+..++. |...........+.
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~--~~~-l~-s~s--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v 103 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPK--SNR-IV-TCS--QDRNAYVYEKRPDGTWKQTLVLLRLNRAA 103 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTT--TCC-EE-EEE--TTSSEEEC------CCCCEEECCCCSSCE
T ss_pred CCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCC--CCE-EE-EEe--CCCeEEEEEcCCCCceeeeeEecccCCce
Confidence 45677889988875443332221 1123345666662 232 22 222 24568888888876 55443211111011
Q ss_pred eeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCe----EEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEE
Q 043460 193 SFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALS----EAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIW 265 (368)
Q Consensus 193 ~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~----~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW 265 (368)
.++.+. +|.....+. ++.|..+|+.+.+ .. .+..|.. .. ...+.. .+|.+.+....+..+.||
T Consensus 104 -----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~h~--~~--v~~~~~~~~~~~l~~~~~d~~i~iw 173 (377)
T 3dwl_C 104 -----TFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK-HLKRPLR--ST--ILSLDWHPNNVLLAAGCADRKAYVL 173 (377)
T ss_dssp -----EEEECCTTSSCCEEEESSSCEEECCC-----CCCCE-EECSSCC--SC--EEEEEECTTSSEEEEEESSSCEEEE
T ss_pred -----EEEEECCCCCEEEEEecCCeEEEEEECCcccceeee-EeecccC--CC--eEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 112220 343333333 6778888988875 23 3332211 11 123333 367777777777899999
Q ss_pred EEccCCCCCCCCCCccCCCCCCceEEEEEee--eccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeE
Q 043460 266 QLDDHRHHSNSHGSNKAASGARSWILKHSIC--MDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKM 340 (368)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~ 340 (368)
.+...+.. .......|....... ...+... ..+.-+.+.+++..++.. .+..+..||+++.+.
T Consensus 174 d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 174 SAYVRDVD--------AKPEASVWGSRLPFNTVCAEYPSG----GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp EECCSSCC---------CCCSCSSCSCCCEEEEEECCCCS----SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred EEEecccC--------CCccccccccccchhhhhhcccCC----ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 98643110 000111232211111 1111111 234556677777766655 566788888887764
No 64
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=86.17 E-value=20 Score=32.85 Aligned_cols=149 Identities=12% Similarity=0.079 Sum_probs=75.6
Q ss_pred Cc-EEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460 104 NG-LILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR 182 (368)
Q Consensus 104 ~G-lll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~ 182 (368)
++ +|.... ....+.|||..+++...+-... .+......+.+.|. .+. .++... ....+.+++.+++.-+..
T Consensus 131 ~~~~lasGs--~dg~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~-~~~-~l~s~s---~D~~v~iwd~~~~~~~~~ 202 (435)
T 4e54_B 131 HPSTVAVGS--KGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPL-NTN-QFYASS---MEGTTRLQDFKGNILRVF 202 (435)
T ss_dssp CTTCEEEEE--TTSCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSS-CTT-EEEEEC---SSSCEEEEETTSCEEEEE
T ss_pred CCCEEEEEe--CCCEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCC-CCC-EEEEEe---CCCEEEEeeccCCceeEE
Confidence 44 444443 5678999999888754432211 12234567788773 222 333322 245688888877654433
Q ss_pred cccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCe-EEEEEECC
Q 043460 183 KVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGA-LNYASRNQ 259 (368)
Q Consensus 183 ~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~-L~~~~~~~ 259 (368)
....... .....-...- +|.+...+. ++.|..+|+.+.... .+.... .. -..+... +|. +.+....+
T Consensus 203 ~~~~~~~---~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~-~~~~h~---~~--v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 203 ASSDTIN---IWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELW-NLRMHK---KK--VTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp ECCSSCS---CCCCCEEEET-TTTEEEEECSSSBEEEEESSSCBCC-CSBCCS---SC--EEEEEECTTCSSEEEEEETT
T ss_pred eccCCCC---ccEEEEEECC-CCCEEEEEeCCCcEeeeccCcceeE-EEeccc---ce--EEeeeecCCCceEEEEecCc
Confidence 2111100 0001111222 455444444 678888998765443 222111 10 1123322 444 55566677
Q ss_pred CeEEEEEEccC
Q 043460 260 STLLIWQLDDH 270 (368)
Q Consensus 260 ~~~~IW~l~~~ 270 (368)
..+.||-+...
T Consensus 273 ~~v~iwd~~~~ 283 (435)
T 4e54_B 273 QTVKIWDLRQV 283 (435)
T ss_dssp SBCCEEETTTC
T ss_pred ceeeEEecccc
Confidence 89999987764
No 65
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=86.12 E-value=13 Score=33.32 Aligned_cols=113 Identities=11% Similarity=0.169 Sum_probs=62.4
Q ss_pred ceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCC-----CCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCC
Q 043460 198 QSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNN-----HPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRH 272 (368)
Q Consensus 198 ~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~-----~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~ 272 (368)
.++.. +|.+|.....+.+.+||..+++......++.... ...........+|.|++...+ . .|..++..++
T Consensus 48 ~p~v~-~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-g--~l~a~d~~tG 123 (376)
T 3q7m_A 48 HPALA-DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-A--QVYALNTSDG 123 (376)
T ss_dssp CCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-S--EEEEEETTTC
T ss_pred ccEEE-CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-C--EEEEEECCCC
Confidence 46888 9999998767899999998776543445543211 110122345567777765433 3 3444443311
Q ss_pred CCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEE
Q 043460 273 HSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKME 341 (368)
Q Consensus 273 ~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~ 341 (368)
...|.... +.. .. ..+. +. ++.|++. ....+++||.+|++..
T Consensus 124 -------------~~~W~~~~--~~~-~~--------~~p~-~~--~~~v~v~~~~g~l~~~d~~tG~~~ 166 (376)
T 3q7m_A 124 -------------TVAWQTKV--AGE-AL--------SRPV-VS--DGLVLIHTSNGQLQALNEADGAVK 166 (376)
T ss_dssp -------------CEEEEEEC--SSC-CC--------SCCE-EE--TTEEEEECTTSEEEEEETTTCCEE
T ss_pred -------------CEEEEEeC--CCc-eE--------cCCE-EE--CCEEEEEcCCCeEEEEECCCCcEE
Confidence 11675532 111 11 1111 22 3456665 5667999999888744
No 66
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=86.10 E-value=18 Score=32.08 Aligned_cols=192 Identities=11% Similarity=0.168 Sum_probs=93.2
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK 183 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~ 183 (368)
+|-+++... ....+.|||..++++................+.+.|. +.+ ++. .. ....+.+++..++.++...
T Consensus 27 ~g~~las~~-~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~-l~s-~s--~D~~v~iw~~~~~~~~~~~ 99 (345)
T 3fm0_A 27 AGTLLASCG-GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNY-LAS-AS--FDATTCIWKKNQDDFECVT 99 (345)
T ss_dssp TSSCEEEEE-TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSE-EEE-EE--TTSCEEEEEECCC-EEEEE
T ss_pred CCCEEEEEc-CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC--CCE-EEE-EE--CCCcEEEEEccCCCeEEEE
Confidence 444444433 5667888998877654221111112223445677762 333 222 22 2456777877776654433
Q ss_pred ccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCe-EEEEEeCCCCCCCCCCceeEE-eeCCeEEEEEECC
Q 043460 184 VSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALS-EAEIIEVPDKNNHPCDSEVIG-LCKGALNYASRNQ 259 (368)
Q Consensus 184 ~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~-~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~~~~~~ 259 (368)
.......+. .++.+. +|.+...+. ++.|..+|+.++. .. .+..-...... -..+. ..+|.+.+....+
T Consensus 100 ~~~~h~~~v-----~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~h~~~--v~~~~~~p~~~~l~s~s~d 171 (345)
T 3fm0_A 100 TLEGHENEV-----KSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE-CVSVLNSHTQD--VKHVVWHPSQELLASASYD 171 (345)
T ss_dssp EECCCSSCE-----EEEEECTTSSEEEEEETTSCEEEEEECTTSCEE-EEEEECCCCSC--EEEEEECSSSSCEEEEETT
T ss_pred EccCCCCCc-----eEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE-EEEEecCcCCC--eEEEEECCCCCEEEEEeCC
Confidence 211000001 122220 454444443 6788889987653 22 22211111111 11222 2367777777778
Q ss_pred CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEEC
Q 043460 260 STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHL 335 (368)
Q Consensus 260 ~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl 335 (368)
..+.||.+.. . .|....++.-.. ..+.-+.+.+++..+... .+..+..+|.
T Consensus 172 ~~i~~w~~~~--~---------------~~~~~~~~~~h~--------~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 172 DTVKLYREEE--D---------------DWVCCATLEGHE--------STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp SCEEEEEEET--T---------------EEEEEEEECCCS--------SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CcEEEEEecC--C---------------CEEEEEEecCCC--------CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 8999998776 3 576655554111 123345566666655544 3445555553
No 67
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=85.33 E-value=16 Score=30.96 Aligned_cols=191 Identities=12% Similarity=0.026 Sum_probs=98.5
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
..+|-+.+... ....++++||. ++...++.+.. .....++..|+. +. ++.... ....+.+|+.. +....
T Consensus 70 ~~~g~l~v~~~-~~~~v~~~d~~-g~~~~~~~~~~--~~~~~~i~~~~~--g~--l~v~~~--~~~~i~~~~~~-g~~~~ 138 (300)
T 2qc5_A 70 SSLGDIWFTEN-GANKIGKLSKK-GGFTEYPLPQP--DSGPYGITEGLN--GD--IWFTQL--NGDRIGKLTAD-GTIYE 138 (300)
T ss_dssp CTTSCEEEEET-TTTEEEEECTT-SCEEEEECSST--TCCEEEEEECST--TC--EEEEET--TTTEEEEECTT-SCEEE
T ss_pred CCCCCEEEEec-CCCeEEEECCC-CCeEEecCCCC--CCCCccceECCC--CC--EEEEcc--CCCeEEEECCC-CCEEE
Confidence 35566655542 35678899988 66655432211 123456677762 22 222221 23467777776 55543
Q ss_pred ccccCCCCCceeeeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEEC
Q 043460 182 RKVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRN 258 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~ 258 (368)
.........| .++.+ .+|.+|+... ...|..||. +.++. .+.+|..... ...+.. .+|.|++....
T Consensus 139 ~~~~~~~~~~------~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~---~~~i~~d~~g~l~v~~~~ 207 (300)
T 2qc5_A 139 YDLPNKGSYP------AFITLGSDNALWFTENQNNSIGRITN-TGKLE-EYPLPTNAAA---PVGITSGNDGALWFVEIM 207 (300)
T ss_dssp EECSSTTCCE------EEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCC---EEEEEECTTSSEEEEETT
T ss_pred ccCCCCCCCc------eeEEECCCCCEEEEecCCCeEEEECC-CCcEE-EeeCCCCCCC---cceEEECCCCCEEEEccC
Confidence 3211001111 12332 1678776654 578999999 67777 5666543221 223333 36888877665
Q ss_pred CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee--CCeEEEEECC
Q 043460 259 QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS--CDMIYRYHLK 336 (368)
Q Consensus 259 ~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~ydl~ 336 (368)
...+.++ +. ++ ..... .++. .. ....-+.+.+++. +++.. ...+..||+
T Consensus 208 ~~~i~~~--~~-~g---------------~~~~~-~~~~-~~-------~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~- 258 (300)
T 2qc5_A 208 GNKIGRI--TT-TG---------------EISEY-DIPT-PN-------ARPHAITAGKNSE-IWFTEWGANQIGRITN- 258 (300)
T ss_dssp TTEEEEE--CT-TC---------------CEEEE-ECSS-TT-------CCEEEEEECSTTC-EEEEETTTTEEEEECT-
T ss_pred CCEEEEE--cC-CC---------------cEEEE-ECCC-CC-------CCceEEEECCCCC-EEEeccCCCeEEEECC-
Confidence 5545444 33 22 33332 1110 00 1123345565666 66654 578999999
Q ss_pred CCeEEEe
Q 043460 337 TNKMELF 343 (368)
Q Consensus 337 t~~~~~v 343 (368)
+++++..
T Consensus 259 ~g~~~~~ 265 (300)
T 2qc5_A 259 DNTIQEY 265 (300)
T ss_dssp TSCEEEE
T ss_pred CCcEEEE
Confidence 4555544
No 68
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=85.33 E-value=19 Score=31.67 Aligned_cols=197 Identities=8% Similarity=0.042 Sum_probs=100.3
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....+.|||..++++..+-.... .......+.+.|...+. .++... ....+.+|+.+++.-...........+..
T Consensus 77 ~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~v~ 151 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP-LLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVN 151 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEE---TTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred cCCEEEEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCC-EEEEec---CCCcEEEEecCCCCceeeEEecCCCCceE
Confidence 56788999998886443322211 11233456666621122 233222 35678889888764221110000000010
Q ss_pred eeccceEEEe--------------CCeEEEEEe-CCeEEEEEcCCCe--EEEEEeCCCCCCCCCCceeEEe-eC---CeE
Q 043460 194 FYVLQSVYSR--------------GGILYNLTY-RSTILRYNIEALS--EAEIIEVPDKNNHPCDSEVIGL-CK---GAL 252 (368)
Q Consensus 194 ~~~~~~v~~~--------------~G~lywl~~-~~~il~fD~~~~~--~~~~~~lP~~~~~~~~~~~l~~-~~---G~L 252 (368)
++.+. +|.+...+. ++.|..+|+.+.. +.....+...... ...+.. .+ |.+
T Consensus 152 -----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~---v~~~~~sp~~~~~~~ 223 (379)
T 3jrp_A 152 -----SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---VRDVAWSPTVLLRSY 223 (379)
T ss_dssp -----EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---EEEEEECCCCSSSEE
T ss_pred -----EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc---EeEEEECCCCCCCCe
Confidence 12220 244444444 6788899987653 3312223221111 123333 34 777
Q ss_pred EEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEE
Q 043460 253 NYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIY 331 (368)
Q Consensus 253 ~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~ 331 (368)
.+....+..+.||.+..... .+.... +...... ..+.-+.+.+++..++.. .++.+.
T Consensus 224 l~s~~~dg~i~iwd~~~~~~---------------~~~~~~-~~~~~~~------~~v~~~~~s~~g~~l~~~~~dg~i~ 281 (379)
T 3jrp_A 224 LASVSQDRTCIIWTQDNEQG---------------PWKKTL-LKEEKFP------DVLWRASWSLSGNVLALSGGDNKVT 281 (379)
T ss_dssp EEEEETTSCEEEEEESSTTS---------------CCEEEE-SSSSCCS------SCEEEEEECSSSCCEEEEESSSSEE
T ss_pred EEEEeCCCEEEEEeCCCCCc---------------cceeee-eccccCC------CcEEEEEEcCCCCEEEEecCCCcEE
Confidence 77777888999999987543 333321 1111111 223445677788776665 667799
Q ss_pred EEECC-CCeEEEecc
Q 043460 332 RYHLK-TNKMELFST 345 (368)
Q Consensus 332 ~ydl~-t~~~~~v~~ 345 (368)
.||++ .++++.+..
T Consensus 282 iw~~~~~~~~~~~~~ 296 (379)
T 3jrp_A 282 LWKENLEGKWEPAGE 296 (379)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEeCCCCCccccccc
Confidence 99988 455665543
No 69
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=84.64 E-value=33 Score=33.90 Aligned_cols=190 Identities=13% Similarity=0.043 Sum_probs=98.4
Q ss_pred eeEEEEcccCccce--ecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 116 HRYYVCNPLTKQCV--AIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 116 ~~~~v~NP~T~~~~--~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
.++++++.-|++.. .+-..+. ......+..+.| .+.|-++..........+.+.+..++.|+.......
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~-~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~------ 272 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTG-DPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG------ 272 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCC-CTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS------
T ss_pred CEEEEEECCCCchhceEEEecCC-CCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC------
Confidence 34888888877632 2211110 001123445555 245544443321123345555555667776652111
Q ss_pred eeccceEEEeCCeEEEEEe----CCeEEEEEcCCCe---EEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEE
Q 043460 194 FYVLQSVYSRGGILYNLTY----RSTILRYNIEALS---EAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQ 266 (368)
Q Consensus 194 ~~~~~~v~~~~G~lywl~~----~~~il~fD~~~~~---~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~ 266 (368)
.....+.- +|.+|..+. ...|..+|+.+.. |+ .+-.+... .. ...+...++.|++....+...+||.
T Consensus 273 -~~~~~~~~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~-~~--l~~~~~~~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 273 -AKYEVHAW-KDRFYVLTDEGAPRQRVFEVDPAKPARASWK-EIVPEDSS-AS--LLSVSIVGGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp -CCEEEEEE-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCE-EEECCCSS-CE--EEEEEEETTEEEEEEEETTEEEEEE
T ss_pred -ceEEEEec-CCcEEEEECCCCCCCEEEEEeCCCCCccCCe-EEecCCCC-Ce--EEEEEEECCEEEEEEEECCEEEEEE
Confidence 01112344 666777664 4789999997754 66 33222111 11 1123445889988888778889999
Q ss_pred EccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-----eCCeEEEEECCCCeEE
Q 043460 267 LDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-----SCDMIYRYHLKTNKME 341 (368)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~ydl~t~~~~ 341 (368)
++-.++ ....+.++... .+.-+++.++++.+++. ....++.||+++++.+
T Consensus 347 ~~~~g~------------------~~~~l~~~~~~-------~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 347 ATLKGK------------------PVRTVQLPGVG-------AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EETTCC------------------EEEECCCSSSS-------EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EeCCCC------------------eeEEecCCCCe-------EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 875322 12223322100 11112234456655554 3457999999998877
Q ss_pred Eecc
Q 043460 342 LFST 345 (368)
Q Consensus 342 ~v~~ 345 (368)
.+..
T Consensus 402 ~l~~ 405 (695)
T 2bkl_A 402 LWAK 405 (695)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6643
No 70
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=84.58 E-value=19 Score=31.13 Aligned_cols=204 Identities=10% Similarity=0.101 Sum_probs=106.1
Q ss_pred cCCc-EEEEeecCCCeeEEEEcc---cCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCC
Q 043460 102 CCNG-LILLGSSLSKHRYYVCNP---LTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSEN 176 (368)
Q Consensus 102 s~~G-lll~~~~~~~~~~~v~NP---~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~ 176 (368)
+.+| .|++... ....+.+|+. .+++... ++.. .....+.++|. +.+-++ ... ....+.+|+..+
T Consensus 92 s~dg~~l~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~s~d--g~~l~~-~~~--~~~~v~~~d~~~ 160 (343)
T 1ri6_A 92 DHQGQFVFVGSY-NAGNVSVTRLEDGLPVGVVDVVEGL-----DGCHSANISPD--NRTLWV-PAL--KQDRICLFTVSD 160 (343)
T ss_dssp CTTSSEEEEEET-TTTEEEEEEEETTEEEEEEEEECCC-----TTBCCCEECTT--SSEEEE-EEG--GGTEEEEEEECT
T ss_pred cCCCCEEEEEec-CCCeEEEEECCCCccccccccccCC-----CCceEEEECCC--CCEEEE-ecC--CCCEEEEEEecC
Confidence 3344 3444432 4567888887 3333222 2211 12345667772 344332 221 245688898887
Q ss_pred -CCceecc--cc-CCCC-CceeeeccceEEEeCCe-EEEEEe-CCeEEEEEcCC--CeEEE--EE-eCCCCCCCCCCcee
Q 043460 177 -KTWITRK--VS-VKPR-RPVSFYVLQSVYSRGGI-LYNLTY-RSTILRYNIEA--LSEAE--II-EVPDKNNHPCDSEV 244 (368)
Q Consensus 177 -~~W~~~~--~~-~~~~-~p~~~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~--~~~~~--~~-~lP~~~~~~~~~~~ 244 (368)
+...... .. .... .|... ...- +|. +|.... .+.|..+|+.. .++.. .+ .+|...........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~----~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVEGAGPRHM----VFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 235 (343)
T ss_dssp TSCEEEEEEEEEECSTTCCEEEE----EECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred CCceeeecccccccCCCCCcceE----EECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence 6665322 11 1111 11111 1222 555 555553 67899999954 44320 22 24433211111112
Q ss_pred EEee-CCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEE
Q 043460 245 IGLC-KGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDII 322 (368)
Q Consensus 245 l~~~-~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 322 (368)
+... +|+ |++....+..+.+|.++..++ .+..+..++.... ..-+++.+++..+
T Consensus 236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~---------------~~~~~~~~~~~~~---------~~~~~~s~dg~~l 291 (343)
T 1ri6_A 236 IHITPDGRHLYACDRTASLITVFSVSEDGS---------------VLSKEGFQPTETQ---------PRGFNVDHSGKYL 291 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSC---------------CEEEEEEEECSSS---------CCCEEECTTSSEE
T ss_pred eEECCCCCEEEEEecCCCEEEEEEEcCCCC---------------ceEEeeeecCCCc---------cceEEECCCCCEE
Confidence 3333 565 444444677899999986544 6777766653221 1225678888888
Q ss_pred EEee--CCeEEEE--ECCCCeEEEecc
Q 043460 323 FLGS--CDMIYRY--HLKTNKMELFST 345 (368)
Q Consensus 323 ~~~~--~~~~~~y--dl~t~~~~~v~~ 345 (368)
++.. ...+..| |.++++++.+..
T Consensus 292 ~~~~~~~~~v~v~~~d~~~g~~~~~~~ 318 (343)
T 1ri6_A 292 IAAGQKSHHISVYEIVGEQGLLHEKGR 318 (343)
T ss_dssp EEECTTTCEEEEEEEETTTTEEEEEEE
T ss_pred EEecCCCCeEEEEEEcCCCceeeEccc
Confidence 8773 4566666 777888887765
No 71
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=84.52 E-value=20 Score=31.28 Aligned_cols=190 Identities=11% Similarity=0.061 Sum_probs=97.7
Q ss_pred CeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 115 KHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
...++++|+.|++... ++... ...++.+++. +.+ ++.... ....+.+++.+++.-...-.......+..
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~d--g~~-l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 137 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDL-----KPFGATINNT--TQT-LWFGNT--VNSAVTAIDAKTGEVKGRLVLDDRKRTEE 137 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-----CCCSEEEETT--TTE-EEEEET--TTTEEEEEETTTCCEEEEEESCCCCCCSS
T ss_pred CccEEEEcCCCCeEEEEEecCC-----CcceEEECCC--CCE-EEEEec--CCCEEEEEeCCCCeeEEEEecCCCccccc
Confidence 5689999999987654 33211 2345677762 343 332222 34578899998876322111100000000
Q ss_pred ---eeccc-eEEEeCCe-EEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEE
Q 043460 194 ---FYVLQ-SVYSRGGI-LYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQ 266 (368)
Q Consensus 194 ---~~~~~-~v~~~~G~-lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~ 266 (368)
..... .+.- +|. +|.... ...|..+|+.+.+....++....... . .....+|+..++...+..+.+|-
T Consensus 138 ~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~-~~~s~dg~~l~~~~~~~~i~~~d 212 (353)
T 3vgz_A 138 VRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST---G-LALDSEGKRLYTTNADGELITID 212 (353)
T ss_dssp CCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC---C-CEEETTTTEEEEECTTSEEEEEE
T ss_pred cCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc---e-EEECCCCCEEEEEcCCCeEEEEE
Confidence 00111 2222 444 666553 56799999998877534442221111 1 22233565444444455666665
Q ss_pred EccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEE
Q 043460 267 LDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~ 342 (368)
++.. .....+....-... ....-+++.++++.+|+. ....+..||+++.+...
T Consensus 213 ~~~~-------------------~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 213 TADN-------------------KILSRKKLLDDGKE----HFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp TTTT-------------------EEEEEEECCCSSSC----CCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred CCCC-------------------eEEEEEEcCCCCCC----cccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 4432 22233332111000 122335678888888877 34689999999888654
No 72
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=84.43 E-value=22 Score=31.72 Aligned_cols=197 Identities=10% Similarity=0.009 Sum_probs=91.0
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCc-CCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKARE-DVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~-~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
+.+|.++... ....+.|||..+++......... ........+.+.|. +.+ ++. .. ....+.+++.+++.-.
T Consensus 103 s~d~~~l~~s--~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~-l~s-gs--~dg~v~iwd~~~~~~~ 174 (357)
T 4g56_B 103 VSEKGILVAS--DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--GTQ-AVS-GG--KDFSVKVWDLSQKAVL 174 (357)
T ss_dssp ETTTEEEEEE--TTSCEEEC--------CCCCEEECCCSSCEEEEEECSS--SSE-EEE-EE--TTSCEEEEETTTTEEE
T ss_pred cCCCCEEEEE--CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC--CCE-EEE-Ee--CCCeEEEEECCCCcEE
Confidence 3455555554 56689999999887655433221 11223345666662 233 222 22 2456888888876533
Q ss_pred eccccCCCCCceeeeccceEEEe-CCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEE
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSR-GGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYA 255 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~-~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~ 255 (368)
..-..... +. .++.+. +|. ++..+. ++.|..+|+.+.+....+...... .. ...+... ++.+.+.
T Consensus 175 ~~~~~h~~--~v-----~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-~~--v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 175 KSYNAHSS--EV-----NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASD-TI--PTSVTWHPEKDDTFAC 244 (357)
T ss_dssp EEECCCSS--CE-----EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCC-SC--EEEEEECTTSTTEEEE
T ss_pred EEEcCCCC--CE-----EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccc-cc--ccchhhhhcccceEEE
Confidence 22110000 00 122220 332 222333 677888998876543122221111 10 1223332 3566666
Q ss_pred EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCC-EEEEe-eCCeEEEE
Q 043460 256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSD-IIFLG-SCDMIYRY 333 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~~~~~~y 333 (368)
...+..+.||-+...+. . ..+... . ..+.-+++.+++. +|.-. .+..+..+
T Consensus 245 g~~d~~i~~wd~~~~~~---------------~----~~~~~~--~------~~v~~l~~sp~~~~~lasgs~D~~i~iw 297 (357)
T 4g56_B 245 GDETGNVSLVNIKNPDS---------------A----QTSAVH--S------QNITGLAYSYHSSPFLASISEDCTVAVL 297 (357)
T ss_dssp EESSSCEEEEESSCGGG---------------C----EEECCC--S------SCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred eecccceeEEECCCCcE---------------e----EEEecc--c------eeEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 66778899998765321 1 111110 0 1233455665553 33333 45678888
Q ss_pred ECCCCeEEEe
Q 043460 334 HLKTNKMELF 343 (368)
Q Consensus 334 dl~t~~~~~v 343 (368)
|+++++..+.
T Consensus 298 d~~~~~~~~~ 307 (357)
T 4g56_B 298 DADFSEVFRD 307 (357)
T ss_dssp CTTSCEEEEE
T ss_pred ECCCCcEeEE
Confidence 8888876543
No 73
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=84.25 E-value=18 Score=30.68 Aligned_cols=148 Identities=13% Similarity=0.081 Sum_probs=78.8
Q ss_pred CCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR 182 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~ 182 (368)
.+|-+++... ....++++|+..+....+.... ......++.+|+. + +++.... ....+.+|+.....-...
T Consensus 130 ~~g~l~v~~~-~~~~i~~~~~~g~~~~~~~~~~--~~~~p~~i~~~~~--g--~l~v~~~--~~~~i~~~~~~g~~~~~~ 200 (286)
T 1q7f_A 130 NKGRIIVVEC-KVMRVIIFDQNGNVLHKFGCSK--HLEFPNGVVVNDK--Q--EIFISDN--RAHCVKVFNYEGQYLRQI 200 (286)
T ss_dssp TTSCEEEEET-TTTEEEEECTTSCEEEEEECTT--TCSSEEEEEECSS--S--EEEEEEG--GGTEEEEEETTCCEEEEE
T ss_pred CCCCEEEEEC-CCCEEEEEcCCCCEEEEeCCCC--ccCCcEEEEECCC--C--CEEEEEC--CCCEEEEEcCCCCEEEEE
Confidence 4565555543 4567888887655444443221 1123456777872 2 2333322 245788888754432222
Q ss_pred cccCCCCCceeeeccceEEE-eCCeEEEEEe-CC-eEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEEC
Q 043460 183 KVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-RS-TILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRN 258 (368)
Q Consensus 183 ~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-~~-~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~ 258 (368)
.. ... .... .++.+ .+|.+|.... .. .|..||...+... .+..+..... ...++. .+|.|++.. .
T Consensus 201 ~~--~g~--~~~p--~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~---~~~i~~~~~g~l~vs~-~ 269 (286)
T 1q7f_A 201 GG--EGI--TNYP--IGVGINSNGEILIADNHNNFNLTIFTQDGQLIS-ALESKVKHAQ---CFDVALMDDGSVVLAS-K 269 (286)
T ss_dssp SC--TTT--SCSE--EEEEECTTCCEEEEECSSSCEEEEECTTSCEEE-EEEESSCCSC---EEEEEEETTTEEEEEE-T
T ss_pred cc--CCc--cCCC--cEEEECCCCCEEEEeCCCCEEEEEECCCCCEEE-EEcccCCCCc---ceeEEECCCCcEEEEC-C
Confidence 21 100 0111 12333 1677777665 33 8999998776666 5544322111 123333 478988875 4
Q ss_pred CCeEEEEEEccC
Q 043460 259 QSTLLIWQLDDH 270 (368)
Q Consensus 259 ~~~~~IW~l~~~ 270 (368)
+.++.||.+...
T Consensus 270 ~~~v~v~~~~~~ 281 (286)
T 1q7f_A 270 DYRLYIYRYVQL 281 (286)
T ss_dssp TTEEEEEECSCC
T ss_pred CCeEEEEEcccc
Confidence 678999987653
No 74
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=84.21 E-value=19 Score=30.85 Aligned_cols=186 Identities=9% Similarity=-0.001 Sum_probs=99.8
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....++++||.++ ...+.... ....++.+++. +. ++.... ....+.+|+..++..+....... . ..
T Consensus 48 ~~~~i~~~~~~~~-~~~~~~~~----~~~~~l~~~~d--g~--l~v~~~--~~~~i~~~d~~~g~~~~~~~~~~-~--~~ 113 (296)
T 3e5z_A 48 RQNRTWAWSDDGQ-LSPEMHPS----HHQNGHCLNKQ--GH--LIACSH--GLRRLERQREPGGEWESIADSFE-G--KK 113 (296)
T ss_dssp GGTEEEEEETTSC-EEEEESSC----SSEEEEEECTT--CC--EEEEET--TTTEEEEECSTTCCEEEEECEET-T--EE
T ss_pred CCCEEEEEECCCC-eEEEECCC----CCcceeeECCC--Cc--EEEEec--CCCeEEEEcCCCCcEEEEeeccC-C--CC
Confidence 4568899999988 55554322 12346777772 23 332221 24578899998888765432111 1 01
Q ss_pred eeccceEEE-eCCeEEEEEe------------------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEE
Q 043460 194 FYVLQSVYS-RGGILYNLTY------------------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALN 253 (368)
Q Consensus 194 ~~~~~~v~~-~~G~lywl~~------------------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~ 253 (368)
...-..+.+ .+|.+|+... ...|..+|.. .+.. .+.-... . ...++. .+|++.
T Consensus 114 ~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~--~---~~gi~~s~dg~~l 186 (296)
T 3e5z_A 114 LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDRV--K---PNGLAFLPSGNLL 186 (296)
T ss_dssp CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCCS--S---EEEEEECTTSCEE
T ss_pred CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCCC--C---CccEEECCCCCEE
Confidence 111112222 1688777421 3479999988 5555 3321111 1 112333 367766
Q ss_pred EEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCce-EEEEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeEEE
Q 043460 254 YASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSW-ILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYR 332 (368)
Q Consensus 254 ~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 332 (368)
+.......+.+|.++.. + .. .....+. .... ...-+++.++|. +++.....+.+
T Consensus 187 v~~~~~~~i~~~~~~~~-g---------------~~~~~~~~~~---~~~~-----~p~~i~~d~~G~-l~v~~~~~v~~ 241 (296)
T 3e5z_A 187 VSDTGDNATHRYCLNAR-G---------------ETEYQGVHFT---VEPG-----KTDGLRVDAGGL-IWASAGDGVHV 241 (296)
T ss_dssp EEETTTTEEEEEEECSS-S---------------CEEEEEEEEC---CSSS-----CCCSEEEBTTSC-EEEEETTEEEE
T ss_pred EEeCCCCeEEEEEECCC-C---------------cCcCCCeEee---CCCC-----CCCeEEECCCCC-EEEEcCCeEEE
Confidence 44445667888877632 2 34 2222221 1111 111245667776 45545788999
Q ss_pred EECCCCeEEEecc
Q 043460 333 YHLKTNKMELFST 345 (368)
Q Consensus 333 ydl~t~~~~~v~~ 345 (368)
||++.+.++.+..
T Consensus 242 ~~~~g~~~~~~~~ 254 (296)
T 3e5z_A 242 LTPDGDELGRVLT 254 (296)
T ss_dssp ECTTSCEEEEEEC
T ss_pred ECCCCCEEEEEEC
Confidence 9999777777655
No 75
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=84.02 E-value=19 Score=30.57 Aligned_cols=146 Identities=10% Similarity=0.066 Sum_probs=77.4
Q ss_pred EecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460 100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW 179 (368)
Q Consensus 100 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W 179 (368)
....+|-+.+... ....+.++||. ++...++.+. ......++..|+. +. ++.... ....+.+|+.. +..
T Consensus 26 ~~d~~g~l~v~~~-~~~~v~~~~~~-~~~~~~~~~~--~~~~~~~i~~~~~--g~--l~v~~~--~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 26 TSSEDGKVWFTQH-KANKISSLDQS-GRIKEFEVPT--PDAKVMCLIVSSL--GD--IWFTEN--GANKIGKLSKK-GGF 94 (300)
T ss_dssp EECTTSCEEEEET-TTTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTT--SC--EEEEET--TTTEEEEECTT-SCE
T ss_pred eECCCCCEEEEcC-CCCeEEEECCC-CceEEEECCC--CCCcceeEEECCC--CC--EEEEec--CCCeEEEECCC-CCe
Confidence 3344566666543 45678889988 7766544321 1123456667752 22 222221 23567788877 666
Q ss_pred eeccccCCCCCceeeeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEE
Q 043460 180 ITRKVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYAS 256 (368)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~ 256 (368)
.......... .-.++.+ .+|.+|+... ...|..+|+. ++.. .+.+|..... ...++. .+|+|++..
T Consensus 95 ~~~~~~~~~~------~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~---~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 95 TEYPLPQPDS------GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSY---PAFITLGSDNALWFTE 163 (300)
T ss_dssp EEEECSSTTC------CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCC---EEEEEECTTSSEEEEE
T ss_pred EEecCCCCCC------CCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCC---ceeEEECCCCCEEEEe
Confidence 5433110101 1113333 1678777654 5789999998 7776 5556532211 223333 467877766
Q ss_pred ECCCeEEEEEEcc
Q 043460 257 RNQSTLLIWQLDD 269 (368)
Q Consensus 257 ~~~~~~~IW~l~~ 269 (368)
..... |++++.
T Consensus 164 ~~~~~--i~~~~~ 174 (300)
T 2qc5_A 164 NQNNS--IGRITN 174 (300)
T ss_dssp TTTTE--EEEECT
T ss_pred cCCCe--EEEECC
Confidence 54444 444444
No 76
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=84.01 E-value=19 Score=30.55 Aligned_cols=191 Identities=10% Similarity=0.026 Sum_probs=96.9
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
..+|-+.+... ....++++||. ++...++.+. ......++..|+. +. +..... ....+.+|+.. +..+.
T Consensus 23 d~~g~l~v~~~-~~~~v~~~d~~-~~~~~~~~~~--~~~~~~~i~~~~~--g~--l~v~~~--~~~~i~~~~~~-g~~~~ 91 (299)
T 2z2n_A 23 SDKGKVWITQH-KANMISCINLD-GKITEYPLPT--PDAKVMCLTISSD--GE--VWFTEN--AANKIGRITKK-GIIKE 91 (299)
T ss_dssp CTTSCEEEEET-TTTEEEEECTT-CCEEEEECSS--TTCCEEEEEECTT--SC--EEEEET--TTTEEEEECTT-SCEEE
T ss_pred CCCCCEEEEec-CCCcEEEEcCC-CCeEEecCCc--ccCceeeEEECCC--CC--EEEeCC--CCCeEEEECCC-CcEEE
Confidence 45666666542 35678899998 7766654321 1123456777762 22 222221 23457777765 44443
Q ss_pred ccccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEEC
Q 043460 182 RKVSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRN 258 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~ 258 (368)
........ .-.++... +|.+|+... ...|..+|+ +.+.. .+..|..... ...++. .+|.|++....
T Consensus 92 ~~~~~~~~------~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~---~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 92 YTLPNPDS------APYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSY---PSFITLGSDNALWFTENQ 160 (299)
T ss_dssp EECSSTTC------CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCC---EEEEEECTTSCEEEEETT
T ss_pred EeCCCcCC------CceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCC---CceEEEcCCCCEEEEeCC
Confidence 33110000 11133331 577776553 578999999 66776 5555532211 223333 36788776654
Q ss_pred CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee--CCeEEEEECC
Q 043460 259 QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS--CDMIYRYHLK 336 (368)
Q Consensus 259 ~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~ydl~ 336 (368)
...+ +.++. ++ +.... .++ ... ....-+++.+++. +|+.. ...+.+||+
T Consensus 161 ~~~i--~~~~~-~g---------------~~~~~-~~~-~~~-------~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~- 211 (299)
T 2z2n_A 161 NNAI--GRITE-SG---------------DITEF-KIP-TPA-------SGPVGITKGNDDA-LWFVEIIGNKIGRITT- 211 (299)
T ss_dssp TTEE--EEECT-TC---------------CEEEE-ECS-STT-------CCEEEEEECTTSS-EEEEETTTTEEEEECT-
T ss_pred CCEE--EEEcC-CC---------------cEEEe-eCC-CCC-------CcceeEEECCCCC-EEEEccCCceEEEECC-
Confidence 4444 44444 23 33321 111 000 1122344555555 45553 567888988
Q ss_pred CCeEEEe
Q 043460 337 TNKMELF 343 (368)
Q Consensus 337 t~~~~~v 343 (368)
+++++.+
T Consensus 212 ~g~~~~~ 218 (299)
T 2z2n_A 212 SGEITEF 218 (299)
T ss_dssp TCCEEEE
T ss_pred CCcEEEE
Confidence 6666654
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=83.80 E-value=22 Score=31.21 Aligned_cols=195 Identities=9% Similarity=0.041 Sum_probs=96.6
Q ss_pred CCeeEEEEcccCccc---eecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCC
Q 043460 114 SKHRYYVCNPLTKQC---VAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRR 190 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~---~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~ 190 (368)
....+.|||..++++ ..++... .....+.+.|. +.+- + ... ....+.+|+.+++.+...........
T Consensus 28 ~d~~v~i~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~--~~~l-~-~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~ 97 (372)
T 1k8k_C 28 NNHEVHIYEKSGNKWVQVHELKEHN----GQVTGVDWAPD--SNRI-V-TCG--TDRNAYVWTLKGRTWKPTLVILRINR 97 (372)
T ss_dssp SSSEEEEEEEETTEEEEEEEEECCS----SCEEEEEEETT--TTEE-E-EEE--TTSCEEEEEEETTEEEEEEECCCCSS
T ss_pred CCCEEEEEeCCCCcEEeeeeecCCC----CcccEEEEeCC--CCEE-E-EEc--CCCeEEEEECCCCeeeeeEEeecCCC
Confidence 456788999888853 3333211 23345667762 3332 2 222 24568888888887655432111110
Q ss_pred ceeeeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCe-EEEEEeCCCCCCCCCCceeEEee-CCeEEEEEECCCeEEEEE
Q 043460 191 PVSFYVLQSVYS-RGGILYNLTY-RSTILRYNIEALS-EAEIIEVPDKNNHPCDSEVIGLC-KGALNYASRNQSTLLIWQ 266 (368)
Q Consensus 191 p~~~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~-~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~IW~ 266 (368)
+. .++.+ .+|.....+. ++.|..+|+.+.. +.....+....... ...+... +|.+.+....+..+.+|.
T Consensus 98 ~v-----~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 98 AA-----RCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST--VLSLDWHPNSVLLAAGSCDFKCRIFS 170 (372)
T ss_dssp CE-----EEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC--EEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ce-----eEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC--eeEEEEcCCCCEEEEEcCCCCEEEEE
Confidence 01 11222 0444444443 6778888887765 22011221111111 2233333 677777777788999999
Q ss_pred EccCCCCCCCCCCccCCCCCCceE-------EEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCC
Q 043460 267 LDDHRHHSNSHGSNKAASGARSWI-------LKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTN 338 (368)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~W~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~ 338 (368)
+...... .......|. .+..+. ... ..+.-+.+.+++..++.. .+..+..||+++.
T Consensus 171 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 171 AYIKEVE--------ERPAPTPWGSKMPFGELMFESS-----SSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp CCCTTTS--------CCCCCBTTBSCCCTTCEEEECC-----CCS---SCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred ccccccc--------ccccccccccccchhhheEecC-----CCC---CeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 7643110 000011222 222221 110 234445667777766665 5667889998877
Q ss_pred eEE
Q 043460 339 KME 341 (368)
Q Consensus 339 ~~~ 341 (368)
+..
T Consensus 235 ~~~ 237 (372)
T 1k8k_C 235 MAV 237 (372)
T ss_dssp TEE
T ss_pred cee
Confidence 643
No 78
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=83.69 E-value=21 Score=30.88 Aligned_cols=143 Identities=10% Similarity=0.130 Sum_probs=69.4
Q ss_pred CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCce
Q 043460 166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSE 243 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~ 243 (368)
...+.+|+.+++.-...-.... .+. .++.+. +|.+...+. ++.|..+|+.+.+....+..... ..
T Consensus 194 d~~i~i~d~~~~~~~~~~~~h~--~~v-----~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------v~ 260 (340)
T 4aow_A 194 DKLVKVWNLANCKLKTNHIGHT--GYL-----NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI------IN 260 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCCS--SCE-----EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC------EE
T ss_pred CCEEEEEECCCCceeeEecCCC--CcE-----EEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce------EE
Confidence 3457788877765433221110 001 122220 455444444 67899999998765423332211 12
Q ss_pred eEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEE
Q 043460 244 VIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIF 323 (368)
Q Consensus 244 ~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 323 (368)
.+....+...++...+..+.||-++.... .+.............. ...+.-+++.+++..|+
T Consensus 261 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~h---~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 261 ALCFSPNRYWLCAATGPSIKIWDLEGKII---------------VDELKQEVISTSSKAE---PPQCTSLAWSADGQTLF 322 (340)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEE---------------EEEECCC-------CC---CCCEEEEEECTTSSEEE
T ss_pred eeecCCCCceeeccCCCEEEEEECCCCeE---------------EEeccccceeeeccCC---CCCEEEEEECCCCCEEE
Confidence 33333333334444567899997765311 1111111110001100 02344466788888777
Q ss_pred Ee-eCCeEEEEECCCCe
Q 043460 324 LG-SCDMIYRYHLKTNK 339 (368)
Q Consensus 324 ~~-~~~~~~~ydl~t~~ 339 (368)
.. .++.|..+|++|++
T Consensus 323 sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 323 AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTSCEEEEEEEC--
T ss_pred EEeCCCEEEEEeCCCcC
Confidence 65 56789999998864
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=83.63 E-value=23 Score=31.34 Aligned_cols=203 Identities=9% Similarity=-0.027 Sum_probs=87.9
Q ss_pred CCcEEEEeecCCCeeEEEEcccCcc-ceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC-ce
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQ-CVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT-WI 180 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~-~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~-W~ 180 (368)
.+|-+++... ....+.|||..+++ +....... ........+.+.|. +. .++... ....+.+|+.+++. |.
T Consensus 65 ~~~~~l~s~s-~d~~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~-~l~~~~---~d~~i~iwd~~~~~~~~ 136 (377)
T 3dwl_C 65 PKSNRIVTCS-QDRNAYVYEKRPDGTWKQTLVLL-RLNRAATFVRWSPN--ED-KFAVGS---GARVISVCYFEQENDWW 136 (377)
T ss_dssp TTTCCEEEEE-TTSSEEEC------CCCCEEECC-CCSSCEEEEECCTT--SS-CCEEEE---SSSCEEECCC-----CC
T ss_pred CCCCEEEEEe-CCCeEEEEEcCCCCceeeeeEec-ccCCceEEEEECCC--CC-EEEEEe---cCCeEEEEEECCcccce
Confidence 3443333332 56788999998887 22211111 01112334555552 22 222222 24467788887764 43
Q ss_pred eccccCC-CCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEE---------------EEEeCCCCCCCCCCc
Q 043460 181 TRKVSVK-PRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEA---------------EIIEVPDKNNHPCDS 242 (368)
Q Consensus 181 ~~~~~~~-~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~---------------~~~~lP~~~~~~~~~ 242 (368)
....... ...+. .++.+. +|.+...+. ++.|..+|+.+.... ..+..- ..... .
T Consensus 137 ~~~~~~~~h~~~v-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--v 208 (377)
T 3dwl_C 137 VSKHLKRPLRSTI-----LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW--V 208 (377)
T ss_dssp CCEEECSSCCSCE-----EEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS--E
T ss_pred eeeEeecccCCCe-----EEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce--E
Confidence 3321111 00000 122221 344333333 677888998644321 011110 11010 1
Q ss_pred eeEEe-eCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCE
Q 043460 243 EVIGL-CKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDI 321 (368)
Q Consensus 243 ~~l~~-~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
..+.. .+|.+.+....+..+.||.+..... ....+..+.... ..+.-+.+.+++.+
T Consensus 209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~--------~~v~~~~~s~~~~~ 265 (377)
T 3dwl_C 209 HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ---------------PPRALITVKLSQ--------LPLRSLLWANESAI 265 (377)
T ss_dssp EEEEECTTSSCEEEEETTTEEC-CEECSTTS---------------CEEECCCEECSS--------SCEEEEEEEETTEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCC---------------cceeeEeecCCC--------CceEEEEEcCCCCE
Confidence 22332 3677666666778999999987533 333333333111 22344567777776
Q ss_pred EEEeeCCeEEEEECCCCeEEEec
Q 043460 322 IFLGSCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 322 v~~~~~~~~~~ydl~t~~~~~v~ 344 (368)
+.......++.|+.....++...
T Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~ 288 (377)
T 3dwl_C 266 VAAGYNYSPILLQGNESGWAHTR 288 (377)
T ss_dssp EEEESSSSEEEECCCC---CCSB
T ss_pred EEEEcCCcEEEEEeCCCceEEEe
Confidence 66666677778888866654433
No 80
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=82.88 E-value=28 Score=31.72 Aligned_cols=143 Identities=13% Similarity=0.023 Sum_probs=76.3
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK 183 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~ 183 (368)
.+.|++. ....+...++.+++...+-.. .....++.+|+. . -+|+.... ....+..++..++..+...
T Consensus 87 ~~~l~~~---~~~~I~~i~~~~~~~~~~~~~----~~~~~gl~~d~~-~--~~ly~~D~--~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 87 EPVLLFA---NRIDIRQVLPHRSEYTLLLNN----LENAIALDFHHR-R--ELVFWSDV--TLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp CCEEEEE---CBSCEEEECTTSCCCEEEECS----CSCEEEEEEETT-T--TEEEEEET--TTTEEEEEETTSCCEEEEE
T ss_pred cceeEee---cCccceeeccCCCcEEEEecC----CCccEEEEEecC-C--CeEEEEeC--CCCcEEEEecCCCCcEEEE
Confidence 5566655 344666777766655544221 223567888873 2 23443332 3456777887776544432
Q ss_pred ccCCCCCceeeeccceEE-EeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEEEECC
Q 043460 184 VSVKPRRPVSFYVLQSVY-SRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYASRNQ 259 (368)
Q Consensus 184 ~~~~~~~p~~~~~~~~v~-~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~~~~~ 259 (368)
.. . .....+-++- . +|.|||... ...|.++|+...... .+. ...... ...++.. +|.|++.....
T Consensus 155 ~~---~--~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~-~l~-~~~l~~---P~giavdp~~g~ly~td~~~ 223 (386)
T 3v65_B 155 ST---G--LESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRK-VLL-WQSLEK---PRAIALHPMEGTIYWTDWGN 223 (386)
T ss_dssp CS---S--CSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCE-EEE-CSSCSC---EEEEEEETTTTEEEEEECSS
T ss_pred eC---C--CCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceE-Eee-cCCCCC---CcEEEEEcCCCeEEEeccCC
Confidence 10 0 1111122333 3 789999876 578999999876544 332 111111 2234443 67788776543
Q ss_pred CeEEEEEEccC
Q 043460 260 STLLIWQLDDH 270 (368)
Q Consensus 260 ~~~~IW~l~~~ 270 (368)
.-.|++.+.+
T Consensus 224 -~~~I~r~~~d 233 (386)
T 3v65_B 224 -TPRIEASSMD 233 (386)
T ss_dssp -SCEEEEEETT
T ss_pred -CCEEEEEeCC
Confidence 2455665543
No 81
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=82.59 E-value=19 Score=31.38 Aligned_cols=104 Identities=9% Similarity=0.022 Sum_probs=61.0
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEEEEccCCCCCCCCCCcc
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNK 281 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~ 281 (368)
+|.|||... ...|..||+.++.-. .+..+.. ...++. .+|+|+++........|+.++..++
T Consensus 42 ~g~lyv~d~~~~~I~~~d~~g~~~~-~~~~~~~------p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g--------- 105 (306)
T 2p4o_A 42 DGTIFVTNHEVGEIVSITPDGNQQI-HATVEGK------VSGLAFTSNGDLVATGWNADSIPVVSLVKSDG--------- 105 (306)
T ss_dssp TSCEEEEETTTTEEEEECTTCCEEE-EEECSSE------EEEEEECTTSCEEEEEECTTSCEEEEEECTTS---------
T ss_pred CCCEEEEeCCCCeEEEECCCCceEE-EEeCCCC------ceeEEEcCCCcEEEEeccCCcceEEEEcCCCC---------
Confidence 688999874 688999999886544 5555432 123333 4788888776544556777654333
Q ss_pred CCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCe
Q 043460 282 AASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNK 339 (368)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~ 339 (368)
+.+.+..++ ... ...-++.. .+..+|+. ....++++|..+.+
T Consensus 106 ------~~~~~~~~~--~~~-------~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 106 ------TVETLLTLP--DAI-------FLNGITPL-SDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp ------CEEEEEECT--TCS-------CEEEEEES-SSSEEEEEETTTTEEEEEETTTTE
T ss_pred ------eEEEEEeCC--Ccc-------ccCccccc-CCCcEEEEECCCCeEEEEeCCCCc
Confidence 454444332 110 11112223 34456665 35789999998753
No 82
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=82.40 E-value=29 Score=31.66 Aligned_cols=143 Identities=10% Similarity=0.061 Sum_probs=68.6
Q ss_pred CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCcee
Q 043460 166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEV 244 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~ 244 (368)
...+.+|+.+++.-...-.... ..-.++.. +|.....+. ++.|..+|+.+.+....+.... . ...
T Consensus 275 dg~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---~---~v~ 340 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLNGHK-------RGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE---E---LVR 340 (435)
T ss_dssp TSEEEEEETTTCCEEEEEECCS-------SCEEEEEE-ETTEEEEEETTSCEEEEETTTCCEEEEECCCS---S---CEE
T ss_pred CCeEEEEECCcCcEEEEEcCCC-------CcEEEEEe-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc---C---cEE
Confidence 4568888887764221110000 00124555 555444444 7889999999876541332111 1 112
Q ss_pred EEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEE
Q 043460 245 IGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFL 324 (368)
Q Consensus 245 l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 324 (368)
....+|...+....+..+.||-+...... ........+..+.... ..+.-+.+ ++..++.
T Consensus 341 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~----------~~~~~~~~~~~~~~h~--------~~v~~l~~--~~~~l~s 400 (435)
T 1p22_A 341 CIRFDNKRIVSGAYDGKIKVWDLVAALDP----------RAPAGTLCLRTLVEHS--------GRVFRLQF--DEFQIVS 400 (435)
T ss_dssp EEECCSSEEEEEETTSCEEEEEHHHHTST----------TSCTTTTEEEEECCCS--------SCCCCEEE--CSSCEEE
T ss_pred EEEecCCEEEEEeCCCcEEEEECCCCCCc----------cccccchheeeccCCC--------CCeEEEEe--CCCEEEE
Confidence 22337877777778889999998764210 0000122333332110 11111233 4555554
Q ss_pred e-eCCeEEEEECCCCeEEE
Q 043460 325 G-SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 325 ~-~~~~~~~ydl~t~~~~~ 342 (368)
. .++.+..+|+.+.....
T Consensus 401 ~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 401 SSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp CCSSSEEEEEC--------
T ss_pred EeCCCEEEEEECCCCCCcc
Confidence 4 57789999998876543
No 83
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=81.93 E-value=23 Score=30.07 Aligned_cols=201 Identities=9% Similarity=0.118 Sum_probs=101.8
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCC--cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAR--EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW 179 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~--~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W 179 (368)
+.+|-+++... ....+.+|||..+....++... ........++.+++. +. +++..... ....+.+|+. ++..
T Consensus 38 ~~~g~l~v~~~-~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~--~g-~l~v~~~~-~~~~i~~~d~-~g~~ 111 (286)
T 1q7f_A 38 NAQNDIIVADT-NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRN--SG-DIIVTERS-PTHQIQIYNQ-YGQF 111 (286)
T ss_dssp CTTCCEEEEEG-GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETT--TT-EEEEEECG-GGCEEEEECT-TSCE
T ss_pred CCCCCEEEEEC-CCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcC--CC-eEEEEcCC-CCCEEEEECC-CCcE
Confidence 34555555543 4557889998865555555322 111223456676431 22 23332211 1356788884 4432
Q ss_pred e-eccccCCCCCceeeeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEE
Q 043460 180 I-TRKVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYA 255 (368)
Q Consensus 180 ~-~~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~ 255 (368)
. .... .. .... .++.+ .+|.+|.... ...|..||...+... .+..+..... ...++. .+|.|++.
T Consensus 112 ~~~~~~--~~---~~~~--~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~---p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 112 VRKFGA--TI---LQHP--RGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH-KFGCSKHLEF---PNGVVVNDKQEIFIS 180 (286)
T ss_dssp EEEECT--TT---CSCE--EEEEECTTSCEEEEETTTTEEEEECTTSCEEE-EEECTTTCSS---EEEEEECSSSEEEEE
T ss_pred EEEecC--cc---CCCc--eEEEEeCCCCEEEEECCCCEEEEEcCCCCEEE-EeCCCCccCC---cEEEEECCCCCEEEE
Confidence 2 1211 00 0111 12332 1688776654 578999998776666 5544322111 223443 46888877
Q ss_pred EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCC-eEEEE
Q 043460 256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCD-MIYRY 333 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~y 333 (368)
......+.+|..+. ... ..+.... . . ....-+++.+++.+++.. ... .+..|
T Consensus 181 ~~~~~~i~~~~~~g------------------~~~--~~~~~~g--~-~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 181 DNRAHCVKVFNYEG------------------QYL--RQIGGEG--I-T---NYPIGVGINSNGEILIADNHNNFNLTIF 234 (286)
T ss_dssp EGGGTEEEEEETTC------------------CEE--EEESCTT--T-S---CSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred ECCCCEEEEEcCCC------------------CEE--EEEccCC--c-c---CCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence 76667787775422 221 2222110 0 0 112335566666644443 233 89999
Q ss_pred ECCCCeEEEecc
Q 043460 334 HLKTNKMELFST 345 (368)
Q Consensus 334 dl~t~~~~~v~~ 345 (368)
|.+.+.++.+..
T Consensus 235 ~~~g~~~~~~~~ 246 (286)
T 1q7f_A 235 TQDGQLISALES 246 (286)
T ss_dssp CTTSCEEEEEEE
T ss_pred CCCCCEEEEEcc
Confidence 988777776654
No 84
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=81.69 E-value=24 Score=31.07 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=31.9
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEE
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYAS 256 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~ 256 (368)
+|.+||... ...|..+|+.+++.. .+..|... .......+|++.+..
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v-----~~i~~~~dg~l~v~~ 107 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLASGRKT-VHALPFMG-----SALAKISDSKQLIAS 107 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCE-----EEEEEEETTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEECCCcc-----eEEEEeCCCeEEEEE
Confidence 478999875 678999999998887 66665321 112224578876654
No 85
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=81.31 E-value=24 Score=29.84 Aligned_cols=110 Identities=12% Similarity=0.046 Sum_probs=55.1
Q ss_pred CCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEe--CCeEEEEEe-CCeEEE
Q 043460 142 PPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSR--GGILYNLTY-RSTILR 218 (368)
Q Consensus 142 ~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~--~G~lywl~~-~~~il~ 218 (368)
..++.+|+. . . +++.... ....+.+|+..++.-+... ... .. .-.++.+. +|.+||... ...|.+
T Consensus 38 ~~gi~~d~~-~-~-~ly~~d~--~~~~I~~~~~~g~~~~~~~---~~~--~~--~p~~ia~d~~~~~lyv~d~~~~~I~~ 105 (267)
T 1npe_A 38 IIGLAFDCV-D-K-VVYWTDI--SEPSIGRASLHGGEPTTII---RQD--LG--SPEGIALDHLGRTIFWTDSQLDRIEV 105 (267)
T ss_dssp EEEEEEETT-T-T-EEEEEET--TTTEEEEEESSSCCCEEEE---CTT--CC--CEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEEecC-C-C-EEEEEEC--CCCEEEEEecCCCCcEEEE---ECC--CC--CccEEEEEecCCeEEEEECCCCEEEE
Confidence 357777872 2 2 3333322 3457788887665422211 110 11 11233331 578999876 578999
Q ss_pred EEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEEEECCCeEEEEEEc
Q 043460 219 YNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYASRNQSTLLIWQLD 268 (368)
Q Consensus 219 fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~~~~~~~~~IW~l~ 268 (368)
+|+...... .+ .+..... ...++.. +|.|++.......-.|++..
T Consensus 106 ~~~~g~~~~-~~-~~~~~~~---P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 106 AKMDGTQRR-VL-FDTGLVN---PRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp EETTSCSCE-EE-ECSSCSS---EEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred EEcCCCCEE-EE-EECCCCC---ccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 999865544 33 2222111 2233333 57888877542223344443
No 86
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=80.65 E-value=27 Score=32.12 Aligned_cols=117 Identities=10% Similarity=0.076 Sum_probs=72.5
Q ss_pred CCeEEEEEeCCeEEEEEcCCCeEE--EEEeC-C-----CC-CCCCCCceeEEee--CCeEEEEEEC-------CCeEEEE
Q 043460 204 GGILYNLTYRSTILRYNIEALSEA--EIIEV-P-----DK-NNHPCDSEVIGLC--KGALNYASRN-------QSTLLIW 265 (368)
Q Consensus 204 ~G~lywl~~~~~il~fD~~~~~~~--~~~~l-P-----~~-~~~~~~~~~l~~~--~G~L~~~~~~-------~~~~~IW 265 (368)
+|.++|.+..+.+.++|..++.-. ..+.+ . .. .... ...++.. .++||+.... +..=+||
T Consensus 237 dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g--~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~ 314 (386)
T 3sjl_D 237 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG--WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV 314 (386)
T ss_dssp TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECS--SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCC--cceeeECCCCCeEEEEeccccccccCCCCCEEE
Confidence 788999888889999999887543 11221 0 00 0011 1123333 4577776542 1246899
Q ss_pred EEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCC-EEEEe--eCCeEEEEECCCCeEE-
Q 043460 266 QLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSD-IIFLG--SCDMIYRYHLKTNKME- 341 (368)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~~~ydl~t~~~~- 341 (368)
+++-. .+..+.+|++..- ..-+++.+++. .+|.. ....+.+||..|++..
T Consensus 315 viD~~-----------------t~kv~~~i~vg~~---------~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 315 VLDAK-----------------TGERLAKFEMGHE---------IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp EEETT-----------------TCCEEEEEEEEEE---------ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEECC-----------------CCeEEEEEECCCC---------cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 99984 5667777774421 22366777775 77775 3678999999999965
Q ss_pred Eecc-CCC
Q 043460 342 LFST-RSP 348 (368)
Q Consensus 342 ~v~~-~~~ 348 (368)
.+.. +.+
T Consensus 369 ~i~~~~~p 376 (386)
T 3sjl_D 369 SVNQLGHG 376 (386)
T ss_dssp EECCCCSS
T ss_pred EecCCCCC
Confidence 4554 554
No 87
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=80.58 E-value=27 Score=29.99 Aligned_cols=181 Identities=7% Similarity=0.038 Sum_probs=96.3
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....+.+||..+++......... .......+.+.|. +.+ ++. .. ....+.+|+.+++.-...-.... . +.
T Consensus 117 ~d~~i~~~d~~~~~~~~~~~~~~-~~~~i~~~~~~~~--~~~-l~~-~~--~dg~v~~~d~~~~~~~~~~~~~~-~-~i- 186 (337)
T 1gxr_A 117 EASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPD--SKV-CFS-CC--SDGNIAVWDLHNQTLVRQFQGHT-D-GA- 186 (337)
T ss_dssp SSSEEEEEECCCC--EEEEEEEC-SSSCEEEEEECTT--SSE-EEE-EE--TTSCEEEEETTTTEEEEEECCCS-S-CE-
T ss_pred CCCcEEEEECCCCCcceeeeccc-CCCceEEEEECCC--CCE-EEE-Ee--CCCcEEEEeCCCCceeeeeeccc-C-ce-
Confidence 56788999998877433221110 1112335566662 232 222 22 24568889988775332211100 0 01
Q ss_pred eeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEEEEccC
Q 043460 194 FYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 194 ~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
.++.+. +|.....+. ++.|..+|+.+.+....+..+.. ...+.. .+|...++...+..+.+|.+...
T Consensus 187 ----~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 187 ----SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ------IFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp ----EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC------EEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred ----EEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCc------eEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 112221 454444443 78899999998776524433221 123333 36777777777788999987663
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEE
Q 043460 271 RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~ 342 (368)
. .. .+... . ..+.-+.+.+++..++.. .+..+..||+++++...
T Consensus 257 ~----------------~~----~~~~~--~------~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 257 D----------------KY----QLHLH--E------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp C----------------EE----EECCC--S------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred C----------------eE----EEcCC--c------cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence 1 11 11100 0 224445677777766665 56689999999887653
No 88
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=80.54 E-value=49 Score=32.96 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=86.8
Q ss_pred CCeEEEEEEEeC-CCcEEEEEeCCCC--C-ceeccccCCCCCceeeeccceEEEeCCeEEEEEe----CCeEEEEEcCC-
Q 043460 153 SHYKIIRFLRAR-MDPEVDIFSSENK--T-WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----RSTILRYNIEA- 223 (368)
Q Consensus 153 ~~ykvv~~~~~~-~~~~~~vyss~~~--~-W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----~~~il~fD~~~- 223 (368)
+.|-++...... ....+.+.+..++ . |+.+...... . ...+.-.++.+|+... ...|..+|+.+
T Consensus 279 G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~----~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 279 GRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA---Q----WDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp SCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS---C----EEEEEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred CCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc---e----EEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 445444433211 2456777777776 6 7766522110 0 1112232677888876 34599999988
Q ss_pred -CeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccc
Q 043460 224 -LSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGN 302 (368)
Q Consensus 224 -~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~ 302 (368)
+.|+.++ |... .. ...+...++.|++....+...+||.++-. + . ....+.++..
T Consensus 352 ~~~~~~l~--~~~~-~~--l~~~~~~~~~lv~~~~~dg~~~l~~~~~~-g---------------~--~~~~l~~~~~-- 406 (741)
T 1yr2_A 352 TPRFDTVV--PESK-DN--LESVGIAGNRLFASYIHDAKSQVLAFDLD-G---------------K--PAGAVSLPGI-- 406 (741)
T ss_dssp SCEEEEEE--CCCS-SE--EEEEEEEBTEEEEEEEETTEEEEEEEETT-S---------------C--EEEECBCSSS--
T ss_pred ccccEEEe--cCCC-Ce--EEEEEEECCEEEEEEEECCEEEEEEEeCC-C---------------C--ceeeccCCCC--
Confidence 5787344 3221 11 11234458888888887778899988753 2 2 1223332111
Q ss_pred cCccccceEEEEEecCCCEEEEe-----eCCeEEEEECCCCeEEEecc
Q 043460 303 KLHVFGLTRFYNIHPNSDIIFLG-----SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~ydl~t~~~~~v~~ 345 (368)
..+..+++.++++.+++. ....++.||+++++.+.+..
T Consensus 407 -----~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 407 -----GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp -----CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSC
T ss_pred -----eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec
Confidence 112233444566655544 34689999999998776643
No 89
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=80.49 E-value=24 Score=29.43 Aligned_cols=183 Identities=11% Similarity=0.072 Sum_probs=97.3
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCC-CCceeccccCCCCCce
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSEN-KTWITRKVSVKPRRPV 192 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~-~~W~~~~~~~~~~~p~ 192 (368)
....+++||+.+++...+.... .....+.+.|. +.+-++ .. ...+.+++..+ +.............
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~----~~v~~~~~spd--g~~l~~--~~---~~~i~~~d~~~~~~~~~~~~~~~~~~-- 86 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTP----ELFEAPNWSPD--GKYLLL--NS---EGLLYRLSLAGDPSPEKVDTGFATIC-- 86 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEES----SCCEEEEECTT--SSEEEE--EE---TTEEEEEESSSCCSCEECCCTTCCCB--
T ss_pred cceeEEEEeCCCCceeeeccCC----cceEeeEECCC--CCEEEE--Ec---CCeEEEEeCCCCCCceEecccccccc--
Confidence 4568999999999887665432 13345667762 343333 22 34788999988 77655432111010
Q ss_pred eeeccceEEEeCCe-EEEEEe----CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCe-EEEEEECCCeEEEE
Q 043460 193 SFYVLQSVYSRGGI-LYNLTY----RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGA-LNYASRNQSTLLIW 265 (368)
Q Consensus 193 ~~~~~~~v~~~~G~-lywl~~----~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~~~IW 265 (368)
...-...- +|. +++... ...|..+|..+.+.. .+..... ...+..+ +|+ |++....+..+.||
T Consensus 87 --~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~------~~~~~~spdg~~l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 87 --NNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTKNLP------SYWHGWSPDGKSFTYCGIRDQVFDIY 156 (297)
T ss_dssp --CSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCSSSS------EEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred --ccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCceE-EeecCCC------ccceEECCCCCEEEEEECCCCceEEE
Confidence 00111222 444 333331 467888888776655 3322211 1122333 565 44455566789999
Q ss_pred EEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEE
Q 043460 266 QLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKME 341 (368)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~ 341 (368)
.++..+. .... +... . ....-+.+.+++..+++. ....++.+++.+++.+
T Consensus 157 ~~~~~~~---------------~~~~---~~~~--~------~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~ 210 (297)
T 2ojh_A 157 SMDIDSG---------------VETR---LTHG--E------GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE 210 (297)
T ss_dssp EEETTTC---------------CEEE---CCCS--S------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred EEECCCC---------------cceE---cccC--C------CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence 9876433 2221 1100 0 112334566677766554 2346777777777776
Q ss_pred Eecc
Q 043460 342 LFST 345 (368)
Q Consensus 342 ~v~~ 345 (368)
.+..
T Consensus 211 ~~~~ 214 (297)
T 2ojh_A 211 RITD 214 (297)
T ss_dssp ECCC
T ss_pred EEec
Confidence 6654
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=80.43 E-value=28 Score=30.19 Aligned_cols=144 Identities=9% Similarity=-0.000 Sum_probs=70.8
Q ss_pred CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc--eeccccCCCCCce
Q 043460 115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW--ITRKVSVKPRRPV 192 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W--~~~~~~~~~~~p~ 192 (368)
...+.|||..+++...+-... .......+.+.|...+.-.++. .. ....+.+|+..++.- .... ... .+.
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~-~~--~dg~i~iwd~~~~~~~~~~~~-~~~--~~v 114 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIE--KAKPIKCGTFGATSLQQRYLAT-GD--FGGNLHIWNLEAPEMPVYSVK-GHK--EII 114 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEE--ESSCEEEEECTTCCTTTCCEEE-EE--TTSCEEEECTTSCSSCSEEEC-CCS--SCE
T ss_pred CcEEEEEeCCCCcccceeeec--ccCcEEEEEEcCCCCCCceEEE-ec--CCCeEEEEeCCCCCccEEEEE-ecc--cce
Confidence 568889998888765432211 1112344556652101122222 22 245688888887651 1111 000 001
Q ss_pred e---eeccceEEEeCCeEEEEEe-CCeEEEEEcCCCe--EEEEEeCCCCCCCCCCceeEE-----eeCCeEEEEEECCCe
Q 043460 193 S---FYVLQSVYSRGGILYNLTY-RSTILRYNIEALS--EAEIIEVPDKNNHPCDSEVIG-----LCKGALNYASRNQST 261 (368)
Q Consensus 193 ~---~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~--~~~~~~lP~~~~~~~~~~~l~-----~~~G~L~~~~~~~~~ 261 (368)
. +...-+..- +|.....+. ++.|..+|+.+.+ .. .+......... ....+. ..+|.+.++...+..
T Consensus 115 ~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~~~~l~~~~~d~~ 191 (357)
T 3i2n_A 115 NAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVA-NMEPVQGENKR-DCWTVAFGNAYNQEERVVCAGYDNGD 191 (357)
T ss_dssp EEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSE-EECCCTTSCCC-CEEEEEEECCCC-CCCEEEEEETTSE
T ss_pred EEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcce-eccccCCCCCC-ceEEEEEEeccCCCCCEEEEEccCCe
Confidence 1 000001123 454444443 7789999999875 33 44333221111 011222 247787777778889
Q ss_pred EEEEEEcc
Q 043460 262 LLIWQLDD 269 (368)
Q Consensus 262 ~~IW~l~~ 269 (368)
+.+|-+..
T Consensus 192 i~i~d~~~ 199 (357)
T 3i2n_A 192 IKLFDLRN 199 (357)
T ss_dssp EEEEETTT
T ss_pred EEEEECcc
Confidence 99998766
No 91
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=80.25 E-value=44 Score=32.34 Aligned_cols=196 Identities=10% Similarity=-0.004 Sum_probs=106.8
Q ss_pred CcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR 182 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~ 182 (368)
++++.+... ...++.|+|+.|++... +|-.. ...++.+.| .+.|-.+ .. ..-.+.+|+..+.+-+..
T Consensus 166 ~~~~~V~~~-~~~~V~viD~~t~~v~~~i~~g~-----~p~~v~~Sp--DGr~lyv-~~---~dg~V~viD~~~~t~~~v 233 (567)
T 1qks_A 166 ENLFSVTLR-DAGQIALIDGSTYEIKTVLDTGY-----AVHISRLSA--SGRYLFV-IG---RDGKVNMIDLWMKEPTTV 233 (567)
T ss_dssp GGEEEEEET-TTTEEEEEETTTCCEEEEEECSS-----CEEEEEECT--TSCEEEE-EE---TTSEEEEEETTSSSCCEE
T ss_pred CceEEEEeC-CCCeEEEEECCCCeEEEEEeCCC-----CccceEECC--CCCEEEE-Ec---CCCeEEEEECCCCCCcEe
Confidence 456665553 67789999999987664 44321 223667777 2444333 22 244788999852222222
Q ss_pred cccCCCCCceeeeccceEEEe-----CC-eEEEEEe-CCeEEEEEcCCCeEEEEEeCCCC-CCC-----CCCceeEEee-
Q 043460 183 KVSVKPRRPVSFYVLQSVYSR-----GG-ILYNLTY-RSTILRYNIEALSEAEIIEVPDK-NNH-----PCDSEVIGLC- 248 (368)
Q Consensus 183 ~~~~~~~~p~~~~~~~~v~~~-----~G-~lywl~~-~~~il~fD~~~~~~~~~~~lP~~-~~~-----~~~~~~l~~~- 248 (368)
........|. .+.+. +| .+|.... ...+.+||..+.+-...+++... ... ......+..+
T Consensus 234 ~~i~~G~~P~------~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~ 307 (567)
T 1qks_A 234 AEIKIGSEAR------SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH 307 (567)
T ss_dssp EEEECCSEEE------EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred EEEecCCCCc------eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC
Confidence 2111111111 23332 45 4565555 68899999888766535655321 110 0001122222
Q ss_pred CCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--e
Q 043460 249 KGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--S 326 (368)
Q Consensus 249 ~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~ 326 (368)
++...++... ..-+||.++-... ...++..|+...+ .+-.++.+++..+|.. .
T Consensus 308 ~~~~~vv~~~-~~g~v~~vd~~~~---------------~~~~v~~i~~~~~---------~~d~~~~pdgr~~~va~~~ 362 (567)
T 1qks_A 308 YRPEFIVNVK-ETGKILLVDYTDL---------------NNLKTTEISAERF---------LHDGGLDGSHRYFITAANA 362 (567)
T ss_dssp SSSEEEEEET-TTTEEEEEETTCS---------------SEEEEEEEECCSS---------EEEEEECTTSCEEEEEEGG
T ss_pred CCCEEEEEec-CCCeEEEEecCCC---------------ccceeeeeecccc---------ccCceECCCCCEEEEEeCC
Confidence 3455555553 2335666665433 4555555653222 2335677888877776 5
Q ss_pred CCeEEEEECCCCeEEE
Q 043460 327 CDMIYRYHLKTNKMEL 342 (368)
Q Consensus 327 ~~~~~~ydl~t~~~~~ 342 (368)
..++.++|.+|+++..
T Consensus 363 sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 363 RNKLVVIDTKEGKLVA 378 (567)
T ss_dssp GTEEEEEETTTTEEEE
T ss_pred CCeEEEEECCCCcEEE
Confidence 6789999999998754
No 92
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=80.11 E-value=32 Score=30.63 Aligned_cols=205 Identities=9% Similarity=-0.017 Sum_probs=97.7
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK 183 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~ 183 (368)
+|.+++.. ....+.+||..+++....-.. .......+.+.|. +. .++. .. ....+.+|+.+++.-...-
T Consensus 217 ~~~~~~~~--~~g~i~~~d~~~~~~~~~~~~---~~~~i~~~~~~~~--~~-~l~~-~~--~d~~i~i~d~~~~~~~~~~ 285 (425)
T 1r5m_A 217 DDKFVIPG--PKGAIFVYQITEKTPTGKLIG---HHGPISVLEFNDT--NK-LLLS-AS--DDGTLRIWHGGNGNSQNCF 285 (425)
T ss_dssp TTEEEEEC--GGGCEEEEETTCSSCSEEECC---CSSCEEEEEEETT--TT-EEEE-EE--TTSCEEEECSSSBSCSEEE
T ss_pred CCEEEEEc--CCCeEEEEEcCCCceeeeecc---CCCceEEEEECCC--CC-EEEE-Ec--CCCEEEEEECCCCccceEe
Confidence 45555544 566889999888654432111 1122345666662 23 2222 22 2456888888775432221
Q ss_pred ccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeE
Q 043460 184 VSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTL 262 (368)
Q Consensus 184 ~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~ 262 (368)
.... .....-...- +|.+.-...++.|..+|+.+.+....+...... ...+.. .+|.+.++...+..+
T Consensus 286 ~~~~-----~~i~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 286 YGHS-----QSIVSASWVG-DDKVISCSMDGSVRLWSLKQNTLLALSIVDGVP-----IFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp CCCS-----SCEEEEEEET-TTEEEEEETTSEEEEEETTTTEEEEEEECTTCC-----EEEEEECTTSSEEEEEETTSCE
T ss_pred cCCC-----ccEEEEEECC-CCEEEEEeCCCcEEEEECCCCcEeEecccCCcc-----EEEEEEcCCCCEEEEEECCCeE
Confidence 1000 0000111222 552222223789999999887765233332111 122333 367777777777899
Q ss_pred EEEEEccCCCCC-CCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECC
Q 043460 263 LIWQLDDHRHHS-NSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLK 336 (368)
Q Consensus 263 ~IW~l~~~~~~~-~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~ 336 (368)
.||.+....... ...++..+.-.......+..+.. ... ...+.-+.+.+++..++.. .++.+..||++
T Consensus 355 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 355 NVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS-----SQD-NDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECHHHHC--------------CEECCEEEEECC-----TTC-CCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEECCCCccceeeeecccccccCcccchhhhhhcC-----ccc-CCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 999987642100 00000000000001112222221 100 0034556677788766665 56678888876
No 93
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=79.62 E-value=26 Score=34.79 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=25.6
Q ss_pred eEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCC
Q 043460 199 SVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVP 233 (368)
Q Consensus 199 ~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP 233 (368)
.++. +|.||.-..++.+.++|..+++-.....++
T Consensus 124 ~a~~-~~~v~v~~~dg~l~alD~~tG~~~W~~~~~ 157 (677)
T 1kb0_A 124 VALW-KGKVYVGAWDGRLIALDAATGKEVWHQNTF 157 (677)
T ss_dssp CEEE-TTEEEEECTTSEEEEEETTTCCEEEEEETT
T ss_pred ceEE-CCEEEEEcCCCEEEEEECCCCCEEeeecCC
Confidence 4567 999999887889999999877554344554
No 94
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=78.99 E-value=36 Score=30.61 Aligned_cols=208 Identities=11% Similarity=0.090 Sum_probs=99.9
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
+.+|-+++... ....+.|||..+++....-.. .......+.+.|. +.+ ++... ....+.+++.+++....
T Consensus 132 s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~p~--~~~-l~s~s---~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 132 SPDGKFLATGA-EDRLIRIWDIENRKIVMILQG---HEQDIYSLDYFPS--GDK-LVSGS---GDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp CTTSSEEEEEE-TTSCEEEEETTTTEEEEEECC---CSSCEEEEEECTT--SSE-EEEEE---TTSEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEc-CCCeEEEEECCCCcEEEEEcc---CCCCEEEEEEcCC--CCE-EEEec---CCCcEEEEECCCCeeEE
Confidence 34554444433 667899999988875432111 1122345667662 232 33222 35678899988876433
Q ss_pred ccccCCCCCceeeeccceEEEe--CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCC--ceeEEe-eCCeEEEE
Q 043460 182 RKVSVKPRRPVSFYVLQSVYSR--GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCD--SEVIGL-CKGALNYA 255 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~~--~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~--~~~l~~-~~G~L~~~ 255 (368)
.-.. ... -..+.+. +|.+...+. ++.|..+|+.+.+....+..+......+. -..+.. .+|.+.+.
T Consensus 202 ~~~~-~~~-------v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 202 TLSI-EDG-------VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp EEEC-SSC-------EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred EEEc-CCC-------cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 2110 000 0112221 344444444 77899999998765423332221111111 122333 36777777
Q ss_pred EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEE
Q 043460 256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYH 334 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~yd 334 (368)
...+..+.||-+....... . ............+ .... ..+.-+++.+++..|+.. .+..+..+|
T Consensus 274 ~s~d~~v~~wd~~~~~~~~-----~--~~~~~~~~~~~~~-----~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKS-----D--SKTPNSGTCEVTY-----IGHK---DFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp EETTSEEEEEEC----------------------CEEEEE-----ECCS---SCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred EeCCCEEEEEECCCCCCcc-----c--ccCCCCCcceEEE-----eccc---CcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 7788899999987642100 0 0000000111111 1110 223335566666655554 556788899
Q ss_pred CCCCeEEE
Q 043460 335 LKTNKMEL 342 (368)
Q Consensus 335 l~t~~~~~ 342 (368)
+++.+...
T Consensus 339 ~~~~~~~~ 346 (393)
T 1erj_A 339 KKSGNPLL 346 (393)
T ss_dssp TTTCCEEE
T ss_pred CCCCeEEE
Confidence 88877543
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=78.19 E-value=38 Score=30.39 Aligned_cols=202 Identities=11% Similarity=0.131 Sum_probs=105.4
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCC----cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAR----EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW 179 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~----~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W 179 (368)
+|-+++... ....+.|||..+++...-...+ .........+.+.|. +...++... ....+.+|+.+++..
T Consensus 93 ~~~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~s~~---~dg~i~iwd~~~~~~ 166 (402)
T 2aq5_A 93 NDNVIASGS-EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT--AQNVLLSAG---CDNVILVWDVGTGAA 166 (402)
T ss_dssp CTTEEEEEE-TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSS--BTTEEEEEE---TTSCEEEEETTTTEE
T ss_pred CCCEEEEEe-CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcC--CCCEEEEEc---CCCEEEEEECCCCCc
Confidence 443443332 5678999998887543211001 011123345666662 223333333 245688999988754
Q ss_pred eecc--ccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEE
Q 043460 180 ITRK--VSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYA 255 (368)
Q Consensus 180 ~~~~--~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~ 255 (368)
...- ..... +. .++.+. +|.....+. ++.|..+|+.+.+....+......... .......+|.+.++
T Consensus 167 ~~~~~~~~~~~--~v-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~ 237 (402)
T 2aq5_A 167 VLTLGPDVHPD--TI-----YSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP--VHAVFVSEGKILTT 237 (402)
T ss_dssp EEEECTTTCCS--CE-----EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSC--CEEEECSTTEEEEE
T ss_pred cEEEecCCCCC--ce-----EEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcc--eEEEEcCCCcEEEE
Confidence 3322 11110 01 122221 444333343 788999999988765233222221111 12223347887777
Q ss_pred E---ECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeE
Q 043460 256 S---RNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMI 330 (368)
Q Consensus 256 ~---~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~ 330 (368)
. ..+..+.||-+..... . .....++.. ..+.-+.+.+++..+++. .+..+
T Consensus 238 g~~~~~d~~i~iwd~~~~~~---------------~-~~~~~~~~~---------~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 238 GFSRMSERQVALWDTKHLEE---------------P-LSLQELDTS---------SGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp EECTTCCEEEEEEETTBCSS---------------C-SEEEECCCC---------SSCEEEEEETTTTEEEEEETTCSCE
T ss_pred eccCCCCceEEEEcCccccC---------------C-ceEEeccCC---------CceeEEEEcCCCCEEEEEEcCCCeE
Confidence 6 3567899998876422 1 111111111 123445678888888776 46789
Q ss_pred EEEECCCCe--EEEecc
Q 043460 331 YRYHLKTNK--MELFST 345 (368)
Q Consensus 331 ~~ydl~t~~--~~~v~~ 345 (368)
..||+++++ ++.+..
T Consensus 293 ~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 293 RYFEITSEAPFLHYLSM 309 (402)
T ss_dssp EEEEECSSTTCEEEEEE
T ss_pred EEEEecCCCcceEeecc
Confidence 999999887 555543
No 96
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=78.17 E-value=49 Score=31.67 Aligned_cols=196 Identities=11% Similarity=0.040 Sum_probs=106.4
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeC--CCCC
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSS--ENKT 178 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss--~~~~ 178 (368)
+-+|.+++... ....+.|||+.|++... ++... ...++.++|. ++|-. ... ..-.+.+|+. .++.
T Consensus 146 ~p~~~~~vs~~-~d~~V~v~D~~t~~~~~~i~~g~-----~~~~v~~spd--g~~l~-v~~---~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 146 DLPNLFSVTLR-DAGQIALVDGDSKKIVKVIDTGY-----AVHISRMSAS--GRYLL-VIG---RDARIDMIDLWAKEPT 213 (543)
T ss_dssp CGGGEEEEEEG-GGTEEEEEETTTCCEEEEEECST-----TEEEEEECTT--SCEEE-EEE---TTSEEEEEETTSSSCE
T ss_pred CCCCEEEEEEc-CCCeEEEEECCCceEEEEEecCc-----ccceEEECCC--CCEEE-EEC---CCCeEEEEECcCCCCc
Confidence 34677777664 56789999999988654 33211 1346677772 34332 222 1377999998 5543
Q ss_pred ceeccccCCCCCceeeeccceEEEe-----CC-eEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCC-CC-----CCCceeE
Q 043460 179 WITRKVSVKPRRPVSFYVLQSVYSR-----GG-ILYNLTY-RSTILRYNIEALSEAEIIEVPDKN-NH-----PCDSEVI 245 (368)
Q Consensus 179 W~~~~~~~~~~~p~~~~~~~~v~~~-----~G-~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~-~~-----~~~~~~l 245 (368)
- .........| ..+.+. +| .+|.-.. ...|.++|..+.+....++.+... .. ......+
T Consensus 214 ~--~~~i~~g~~p------~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i 285 (543)
T 1nir_A 214 K--VAEIKIGIEA------RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI 285 (543)
T ss_dssp E--EEEEECCSEE------EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred E--EEEEecCCCc------ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEE
Confidence 2 1111000101 123331 34 4555553 788999999987765356553210 00 0001223
Q ss_pred Eee-CCeEEEEEE-CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEE
Q 043460 246 GLC-KGALNYASR-NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIF 323 (368)
Q Consensus 246 ~~~-~G~L~~~~~-~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 323 (368)
..+ +|...++.. .+..+.+|-+...+. .++..++...+. +-+++.+++..+|
T Consensus 286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-----------------l~~~~i~~~~~~---------~~~~~spdg~~l~ 339 (543)
T 1nir_A 286 IASHEHPEFIVNVKETGKVLLVNYKDIDN-----------------LTVTSIGAAPFL---------HDGGWDSSHRYFM 339 (543)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECTTSSS-----------------CEEEEEECCSSC---------CCEEECTTSCEEE
T ss_pred EECCCCCEEEEEECCCCeEEEEEecCCCc-----------------ceeEEeccCcCc---------cCceECCCCCEEE
Confidence 333 455444544 555666666655322 123344422222 2257888888777
Q ss_pred Ee--eCCeEEEEECCCCeEEEe
Q 043460 324 LG--SCDMIYRYHLKTNKMELF 343 (368)
Q Consensus 324 ~~--~~~~~~~ydl~t~~~~~v 343 (368)
.. .+..+..+|.+++++...
T Consensus 340 va~~~~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp EEEGGGTEEEEEETTTTEEEEE
T ss_pred EEecCCCeEEEEECCCCeEEEe
Confidence 66 467899999999987653
No 97
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=78.13 E-value=34 Score=29.72 Aligned_cols=137 Identities=12% Similarity=0.096 Sum_probs=80.3
Q ss_pred EEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE
Q 043460 168 EVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG 246 (368)
Q Consensus 168 ~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~ 246 (368)
.+.+++.++++=.... +++. ..+.++...++.||.+.. ++.+.+||..+.+....++.+... ..++
T Consensus 76 ~v~~iD~~Tgkv~~~~--l~~~-----~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG------wGLt 142 (268)
T 3nok_A 76 TLRQLSLESAQPVWME--RLGN-----IFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG------WGLC 142 (268)
T ss_dssp EEEECCSSCSSCSEEE--ECTT-----CCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC------CCEE
T ss_pred EEEEEECCCCcEEeEE--CCCC-----cceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce------eEEe
Confidence 4888888888633222 1211 223445553778988876 789999999998776577776432 2455
Q ss_pred eeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-
Q 043460 247 LCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG- 325 (368)
Q Consensus 247 ~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 325 (368)
..+++|++... .=.|++++-.+. ..+.+|....-+... ....-+-.. +| .||..
T Consensus 143 ~Dg~~L~vSdG---s~~l~~iDp~T~-----------------~v~~~I~V~~~g~~v---~~lNeLe~~-dG-~lyanv 197 (268)
T 3nok_A 143 YWNGKLVRSDG---GTMLTFHEPDGF-----------------ALVGAVQVKLRGQPV---ELINELECA-NG-VIYANI 197 (268)
T ss_dssp EETTEEEEECS---SSEEEEECTTTC-----------------CEEEEEECEETTEEC---CCEEEEEEE-TT-EEEEEE
T ss_pred cCCCEEEEECC---CCEEEEEcCCCC-----------------eEEEEEEeCCCCccc---ccccccEEe-CC-EEEEEE
Confidence 55677777653 226778876432 344555532111100 001111222 34 57765
Q ss_pred -eCCeEEEEECCCCeEEE
Q 043460 326 -SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 326 -~~~~~~~ydl~t~~~~~ 342 (368)
....|.+.|++|+++..
T Consensus 198 w~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 198 WHSSDVLEIDPATGTVVG 215 (268)
T ss_dssp TTCSEEEEECTTTCBEEE
T ss_pred CCCCeEEEEeCCCCcEEE
Confidence 56789999999999754
No 98
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=78.07 E-value=42 Score=30.79 Aligned_cols=110 Identities=7% Similarity=0.047 Sum_probs=60.5
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCe-EEEEEECCCeEEEEEEccCCCCCCCCCCcc
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNK 281 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~ 281 (368)
+|.|||... ...|..+|+.+.+.. .+..... .. . .....+|. |++...+.. -.||.++...
T Consensus 141 ~g~lyv~d~~~~~I~~id~~~g~~~-~~~~~~~--~~--~-ia~~~~g~~l~~~d~~~~-~~I~~~d~~~---------- 203 (409)
T 3hrp_A 141 NNTVLAYQRDDPRVRLISVDDNKVT-TVHPGFK--GG--K-PAVTKDKQRVYSIGWEGT-HTVYVYMKAS---------- 203 (409)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEEETCC--BC--B-CEECTTSSEEEEEBSSTT-CEEEEEEGGG----------
T ss_pred CCCEEEEecCCCcEEEEECCCCEEE-EeeccCC--CC--c-eeEecCCCcEEEEecCCC-ceEEEEEcCC----------
Confidence 789999886 478999999988887 4433211 11 1 22233454 444443332 2677777642
Q ss_pred CCCCCCceE--EEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEEe
Q 043460 282 AASGARSWI--LKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMELF 343 (368)
Q Consensus 282 ~~~~~~~W~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~v 343 (368)
.|. ....+..... ....-+++.++++.||+. ....+++||+++++.+.+
T Consensus 204 ------~~~~~~~g~~~~~~~-------~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 204 ------GWAPTRIGQLGSTFS-------GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp ------TTCEEEEEECCTTSC-------SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred ------CceeEEeeeccchhc-------CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 233 2211111011 112224667745556665 445799999988876665
No 99
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=78.03 E-value=59 Score=32.53 Aligned_cols=200 Identities=13% Similarity=0.043 Sum_probs=99.0
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK 183 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~ 183 (368)
+|-|.+.. ...-++.+||.|+++..++... ........+..|+. + + +.+.. ...+..|+..++.|+...
T Consensus 417 ~g~lWigt--~~~Gl~~~~~~~~~~~~~~~~~-~~~~~v~~i~~d~~--g--~-lwigt---~~Gl~~~~~~~~~~~~~~ 485 (781)
T 3v9f_A 417 EGNLWFGT--YLGNISYYNTRLKKFQIIELEK-NELLDVRVFYEDKN--K--K-IWIGT---HAGVFVIDLASKKVIHHY 485 (781)
T ss_dssp TSCEEEEE--TTEEEEEECSSSCEEEECCSTT-TCCCCEEEEEECTT--S--E-EEEEE---TTEEEEEESSSSSCCEEE
T ss_pred CCCEEEEe--ccCCEEEEcCCCCcEEEeccCC-CCCCeEEEEEECCC--C--C-EEEEE---CCceEEEeCCCCeEEecc
Confidence 44444432 3356788888888887765431 01112233444431 1 1 22222 246888999998887654
Q ss_pred ccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCC
Q 043460 184 VSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQS 260 (368)
Q Consensus 184 ~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~ 260 (368)
...... .....-.++... +|.+ |++. ...+..||+.++++. .+..+...... ....+.+ .+|.|.+... .
T Consensus 486 ~~~~~~--~~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~-~i~~i~~d~~g~lWi~T~--~ 558 (781)
T 3v9f_A 486 DTSNSQ--LLENFVRSIAQDSEGRF-WIGTFGGGVGIYTPDMQLVR-KFNQYEGFCSN-TINQIYRSSKGQMWLATG--E 558 (781)
T ss_dssp CTTTSS--CSCSCEEEEEECTTCCE-EEEESSSCEEEECTTCCEEE-EECTTTTCSCS-CEEEEEECTTSCEEEEET--T
T ss_pred cCcccc--cccceeEEEEEcCCCCE-EEEEcCCCEEEEeCCCCeEE-EccCCCCCCCC-eeEEEEECCCCCEEEEEC--C
Confidence 211100 000011134331 4554 5555 478999999999998 65443322111 0122222 3566665543 2
Q ss_pred eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeEEEEECCCCeE
Q 043460 261 TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKM 340 (368)
Q Consensus 261 ~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ydl~t~~~ 340 (368)
.+ |..++..++ .+..... ...+... .+.-+....+ +-|++.....+++||++++++
T Consensus 559 Gl-v~~~d~~~~---------------~~~~~~~--~~gl~~~-----~i~~i~~d~~-g~lW~~t~~Gl~~~~~~~~~~ 614 (781)
T 3v9f_A 559 GL-VCFPSARNF---------------DYQVFQR--KEGLPNT-----HIRAISEDKN-GNIWASTNTGISCYITSKKCF 614 (781)
T ss_dssp EE-EEESCTTTC---------------CCEEECG--GGTCSCC-----CCCEEEECSS-SCEEEECSSCEEEEETTTTEE
T ss_pred Cc-eEEECCCCC---------------cEEEccc--cCCCCCc-----eEEEEEECCC-CCEEEEcCCceEEEECCCCce
Confidence 22 133333323 3433211 1112211 1221222333 446666677899999999998
Q ss_pred EEecc
Q 043460 341 ELFST 345 (368)
Q Consensus 341 ~~v~~ 345 (368)
+....
T Consensus 615 ~~~~~ 619 (781)
T 3v9f_A 615 YTYDH 619 (781)
T ss_dssp EEECG
T ss_pred EEecc
Confidence 87654
No 100
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=77.75 E-value=34 Score=29.53 Aligned_cols=193 Identities=7% Similarity=0.062 Sum_probs=98.7
Q ss_pred eEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc-eec-cccCCC-CCcee
Q 043460 117 RYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW-ITR-KVSVKP-RRPVS 193 (368)
Q Consensus 117 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W-~~~-~~~~~~-~~p~~ 193 (368)
.+.+||+.+++....-+.. ....++.++|. +.+ ++..... ....+.+|+...+.- ... ....+. ..|..
T Consensus 109 ~i~v~d~~~~~~~~~~~~~----~~~~~~~~spd--g~~-l~~~~~~-~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 180 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIP----YDAVGIAISPN--GNG-LILIDRS-SANTVRRFKIDADGVLFDTGQEFISGGTRPFN 180 (331)
T ss_dssp EEEEEETTTTEEEEEEECC----TTEEEEEECTT--SSC-EEEEEET-TTTEEEEEEECTTCCEEEEEEEEECSSSSEEE
T ss_pred cEEEEECCCCCeEEEEECC----CCccceEECCC--CCE-EEEEecC-CCceEEEEEECCCCcEeecCCccccCCCCccc
Confidence 8999999988765532111 12246777873 344 3333221 223377777654321 111 000010 01111
Q ss_pred eeccceEEEeCCe-EEEEEe-CCeEEEEEcCCCeE---EEEEeCCCCCCCCCCceeEEeeCCe-EEEEEECCCeEEEEEE
Q 043460 194 FYVLQSVYSRGGI-LYNLTY-RSTILRYNIEALSE---AEIIEVPDKNNHPCDSEVIGLCKGA-LNYASRNQSTLLIWQL 267 (368)
Q Consensus 194 ~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~~~~---~~~~~lP~~~~~~~~~~~l~~~~G~-L~~~~~~~~~~~IW~l 267 (368)
. .+.- +|. +|.... ...|..+|+.+.+. ...++.+... .......+|+ |++....+..+.+|-+
T Consensus 181 ~----~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 181 I----TFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLP-----GTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp E----EECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCC-----CCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred e----EECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCC-----ceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 1 2223 675 555554 67899999988765 2144432111 1122234677 4444444455666655
Q ss_pred ccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEEecc
Q 043460 268 DDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~v~~ 345 (368)
+. + +...+..+.......... .....-+++.+++..+|+. ....+..||+.+++...+..
T Consensus 251 ~~--~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~ 312 (331)
T 3u4y_A 251 LS--G---------------TLSFVKSFGHGLLIDPRP-LFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAG 312 (331)
T ss_dssp TT--T---------------EEEEEEEEECCCCCCCGG-GTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTT
T ss_pred CC--C---------------ceeeecccccccccCCCC-cccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceec
Confidence 43 3 444444444211000000 0111235788888888887 45689999999999888766
No 101
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=77.52 E-value=37 Score=29.88 Aligned_cols=199 Identities=11% Similarity=0.113 Sum_probs=98.3
Q ss_pred eEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC-CCcEEEEEeCC--CCCceeccccCCCCCcee
Q 043460 117 RYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR-MDPEVDIFSSE--NKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 117 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~-~~~~~~vyss~--~~~W~~~~~~~~~~~p~~ 193 (368)
.++.+|+.|++...+... ......++.++|. +. .++...... ....+.+|+.. ++..+.........
T Consensus 30 ~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spd--g~-~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~---- 99 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDA---EVANPSYLIPSAD--GK-FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG---- 99 (361)
T ss_dssp EEEEEETTTCCEEEEEEE---ECSCCCSEEECTT--SS-EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS----
T ss_pred EEEEEeCCCCCEEEeecc---cCCCCceEEECCC--CC-EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC----
Confidence 344568888887766433 1123345777772 23 333333211 22466666544 46665554221100
Q ss_pred eeccceEEEeCCe-EEEEEe-CCeEEEEEcCCC-eEE---EEEeCCCCCC-----CCCCceeEEe-eCCe-EEEEEECCC
Q 043460 194 FYVLQSVYSRGGI-LYNLTY-RSTILRYNIEAL-SEA---EIIEVPDKNN-----HPCDSEVIGL-CKGA-LNYASRNQS 260 (368)
Q Consensus 194 ~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~~-~~~---~~~~lP~~~~-----~~~~~~~l~~-~~G~-L~~~~~~~~ 260 (368)
.....+.+ +|. +|.... .+.+.+||+.+. ... ..+....... .......+.. .+|+ |++......
T Consensus 100 -~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 177 (361)
T 3scy_A 100 -ADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD 177 (361)
T ss_dssp -SCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred -CCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC
Confidence 01113445 555 554443 567889998753 221 0111111000 0000122333 3776 665555677
Q ss_pred eEEEEEEccCCCCCCCCCCccCCCCCCceEEE---EEeeeccccccCccccceEEEEEecCCCEEEEee--CCeEEEEEC
Q 043460 261 TLLIWQLDDHRHHSNSHGSNKAASGARSWILK---HSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS--CDMIYRYHL 335 (368)
Q Consensus 261 ~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~ydl 335 (368)
.+.+|.++.... .++....... ..+... .. ...+-+++.+++..+|+.. ...+..||+
T Consensus 178 ~v~v~~~~~~~~----------~~~~~~l~~~~~~~~~~~~---~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 178 QIHKFNINPNAN----------ADNKEKFLTKGTPEAFKVA---PG----SGPRHLIFNSDGKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp EEEEEEECTTCC----------TTTCCCCEEEEEEEEEECC---TT----CCEEEEEECTTSSEEEEEETTTCEEEEEEE
T ss_pred EEEEEEEcCCCC----------cccccceeecccccceecC---CC----CCCeEEEEcCCCCEEEEEcCCCCeEEEEEe
Confidence 899999986421 0000002222 111111 11 1234467888888888873 678999999
Q ss_pred CCCeEEEec
Q 043460 336 KTNKMELFS 344 (368)
Q Consensus 336 ~t~~~~~v~ 344 (368)
++++++.+.
T Consensus 241 ~~g~~~~~~ 249 (361)
T 3scy_A 241 ADGMLDEIQ 249 (361)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEeE
Confidence 988876554
No 102
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=77.50 E-value=37 Score=29.89 Aligned_cols=144 Identities=13% Similarity=0.226 Sum_probs=75.1
Q ss_pred CcEEEEEeCCCCCceeccccCCCC-CceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCc
Q 043460 166 DPEVDIFSSENKTWITRKVSVKPR-RPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDS 242 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~~~~~-~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~ 242 (368)
...+.+++..++.|.........+ .+. .++.+. +|.....+. ++.+..+|..++.+.....+.... .. -
T Consensus 37 D~~i~iw~~~~~~~~~~~~~~~~h~~~v-----~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~-~~--v 108 (345)
T 3fm0_A 37 DRRIRIWGTEGDSWICKSVLSEGHQRTV-----RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE-NE--V 108 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECSSCSSCE-----EEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS-SC--E
T ss_pred CCeEEEEEcCCCcceeeeeeccccCCcE-----EEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC-CC--c
Confidence 456888888887775432111100 000 112220 344333333 677888888887765122332211 11 1
Q ss_pred eeEEe-eCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCE
Q 043460 243 EVIGL-CKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDI 321 (368)
Q Consensus 243 ~~l~~-~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (368)
..+.. .+|.+.+....+..+.||.+.... .+..+..+.... ..+.-+.+.+++..
T Consensus 109 ~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~----------------~~~~~~~~~~h~--------~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 109 KSVAWAPSGNLLATCSRDKSVWVWEVDEED----------------EYECVSVLNSHT--------QDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEECTTS----------------CEEEEEEECCCC--------SCEEEEEECSSSSC
T ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCC----------------CeEEEEEecCcC--------CCeEEEEECCCCCE
Confidence 23333 367777777788899999997642 344444332111 12334556666665
Q ss_pred EEEe-eCCeEEEEECCCCeEE
Q 043460 322 IFLG-SCDMIYRYHLKTNKME 341 (368)
Q Consensus 322 v~~~-~~~~~~~ydl~t~~~~ 341 (368)
+... .+..+..||.+++++.
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~ 185 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWV 185 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEE
T ss_pred EEEEeCCCcEEEEEecCCCEE
Confidence 5554 4556777777776654
No 103
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=77.48 E-value=43 Score=30.59 Aligned_cols=184 Identities=10% Similarity=0.033 Sum_probs=98.1
Q ss_pred eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeee
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFY 195 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~ 195 (368)
.++.+||..+++.+.+.... .....+.+.|. +. +++..........+.+++.+++..+..... + ......
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~----~~v~~~~~Spd--g~-~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-~-~~~~~~- 228 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP----QPLMSPAWSPD--GS-KLAYVTFESGRSALVIQTLANGAVRQVASF-P-RHNGAP- 228 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES----SCEEEEEECTT--SS-EEEEEECTTSSCEEEEEETTTCCEEEEECC-S-SCEEEE-
T ss_pred ceEEEEcCCCCCCEEEeCCC----CcceeeEEcCC--CC-EEEEEEecCCCcEEEEEECCCCcEEEeecC-C-CcccCE-
Confidence 68999999877666654322 12234556662 23 333333222346899999998876544311 1 100110
Q ss_pred ccceEEEeCCe-EEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCe-EEEEEECCCeEEEEEEcc
Q 043460 196 VLQSVYSRGGI-LYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGA-LNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 196 ~~~~v~~~~G~-lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~-L~~~~~~~~~~~IW~l~~ 269 (368)
...- +|. |++... ...|..+|+.+.+.. .+.-... . ...+.- .+|+ |++....+....||.++-
T Consensus 229 ---~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~--~---~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 229 ---AFSP-DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRS--N---NTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp ---EECT-TSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSS--C---EEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred ---EEcC-CCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCCC--c---ccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 1112 554 554543 346999999988766 3321111 1 122333 3676 444443455677887776
Q ss_pred CCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee----CCeEEEEECCCCeEEEecc
Q 043460 270 HRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS----CDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~ydl~t~~~~~v~~ 345 (368)
.++ .-. .+... . ....-+.+.+++..|++.. ...++.+|+++++.+.+..
T Consensus 299 ~~~---------------~~~---~l~~~--~------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~ 352 (415)
T 2hqs_A 299 NGG---------------APQ---RITWE--G------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS 352 (415)
T ss_dssp TSS---------------CCE---ECCCS--S------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC
T ss_pred CCC---------------CEE---EEecC--C------CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC
Confidence 433 211 11111 0 1122345677888776662 2579999999998877654
No 104
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=77.21 E-value=37 Score=29.72 Aligned_cols=159 Identities=13% Similarity=0.145 Sum_probs=83.3
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCC------cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAR------EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK 177 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~------~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~ 177 (368)
+|.+.+........+.++|+.......+.... ........++.+|+. . . .++.... ....+.+|+..+|
T Consensus 154 ~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~-g-~l~v~d~--~~~~I~~~~~~~G 228 (329)
T 3fvz_A 154 TGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-L-D-QLCVADR--ENGRIQCFKTDTK 228 (329)
T ss_dssp TCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-T-T-EEEEEET--TTTEEEEEETTTC
T ss_pred CCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-C-C-EEEEEEC--CCCEEEEEECCCC
Confidence 67777765313567888886544444443211 112234567888872 1 2 2333322 4568999999887
Q ss_pred CceeccccCC-CCCceee--eccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeE
Q 043460 178 TWITRKVSVK-PRRPVSF--YVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGAL 252 (368)
Q Consensus 178 ~W~~~~~~~~-~~~p~~~--~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L 252 (368)
.....-.... ...+... ..+..+.. +|.+|.... ...|.++|..+.+....+. +... .......++. .+|.|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~pg~~~~~-~g~~~v~~~~~~~v~~~~~~~g~~~~~~~-~~~~-~~~~p~~ia~~~dG~l 305 (329)
T 3fvz_A 229 EFVREIKHASFGRNVFAISYIPGFLFAV-NGKPYFGDQEPVQGFVMNFSSGEIIDVFK-PVRK-HFDMPHDIVASEDGTV 305 (329)
T ss_dssp CEEEEECCTTTTTCEEEEEEETTEEEEE-ECCCCTTCSCCCCEEEEETTTCCEEEEEC-CSSS-CCSSEEEEEECTTSEE
T ss_pred cEEEEEeccccCCCcceeeecCCEEEEe-CCCEEeccCCCcEEEEEEcCCCeEEEEEc-CCCC-ccCCeeEEEECCCCCE
Confidence 7644321111 1111111 11112333 444443222 3579999998887762332 1111 1111223333 47888
Q ss_pred EEEEECCCeEEEEEEccC
Q 043460 253 NYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 253 ~~~~~~~~~~~IW~l~~~ 270 (368)
++......++.+|.++..
T Consensus 306 yvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 306 YIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEESSSCCEEEEEEEEC
T ss_pred EEEECCCCEEEEEeCCcc
Confidence 888887788999988764
No 105
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=76.87 E-value=31 Score=28.70 Aligned_cols=197 Identities=12% Similarity=0.021 Sum_probs=97.5
Q ss_pred cCCcEEEEeecCCCeeEEEEcccC-ccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLT-KQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T-~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
+-+|-.++.. ....+++||..+ ++...+..... ......+.+.|. +.+-++..........+.+++..++.-+
T Consensus 50 spdg~~l~~~--~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~spd--g~~l~~~~~~~~~~~~l~~~~~~~~~~~ 123 (297)
T 2ojh_A 50 SPDGKYLLLN--SEGLLYRLSLAGDPSPEKVDTGFA--TICNNDHGISPD--GALYAISDKVEFGKSAIYLLPSTGGTPR 123 (297)
T ss_dssp CTTSSEEEEE--ETTEEEEEESSSCCSCEECCCTTC--CCBCSCCEECTT--SSEEEEEECTTTSSCEEEEEETTCCCCE
T ss_pred CCCCCEEEEE--cCCeEEEEeCCCCCCceEeccccc--cccccceEECCC--CCEEEEEEeCCCCcceEEEEECCCCceE
Confidence 3344444333 345899999999 88777654321 112234566662 3332222211113566777777776644
Q ss_pred eccccCCCCCceeeeccceEEEeCCe-EEEEEe-CC--eEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEE
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSRGGI-LYNLTY-RS--TILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYA 255 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~~G~-lywl~~-~~--~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~ 255 (368)
...... . .... ...- +|. +++... .. .|..+|..+.... .+..... . ...+.. .+|+..++
T Consensus 124 ~~~~~~--~-~~~~----~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~--~---~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 124 LMTKNL--P-SYWH----GWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVET-RLTHGEG--R---NDGPDYSPDGRWIYF 189 (297)
T ss_dssp ECCSSS--S-EEEE----EECT-TSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCSSS--C---EEEEEECTTSSEEEE
T ss_pred EeecCC--C-ccce----EECC-CCCEEEEEECCCCceEEEEEECCCCcce-EcccCCC--c---cccceECCCCCEEEE
Confidence 333110 0 0110 1111 343 443333 33 4556666666655 3321111 1 122333 36764444
Q ss_pred EE-CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eC------
Q 043460 256 SR-NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SC------ 327 (368)
Q Consensus 256 ~~-~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~------ 327 (368)
.. .+..+.||.++..++ .... +.... ....-+.+.+++..|++. ..
T Consensus 190 ~~~~~~~~~i~~~~~~~~---------------~~~~---~~~~~--------~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGS---------------SVER---ITDSA--------YGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp EECTTSSCEEEEEETTSS---------------CEEE---CCCCS--------EEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred EecCCCCccEEEECCCCC---------------CcEE---EecCC--------cccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 44 567899999985433 2221 21110 112335567778766665 21
Q ss_pred -----CeEEEEECCCCeEEEec
Q 043460 328 -----DMIYRYHLKTNKMELFS 344 (368)
Q Consensus 328 -----~~~~~ydl~t~~~~~v~ 344 (368)
..++.+|+++++.+.+.
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEE
T ss_pred cccCceEEEEEecCCCCceeee
Confidence 46999999998876554
No 106
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=76.36 E-value=82 Score=33.26 Aligned_cols=199 Identities=12% Similarity=0.107 Sum_probs=103.6
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
+.+|-+++... ....+.|||..|++... +... ......+.+.|. +.+- +... ....+.+++..++.-.
T Consensus 624 s~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~h----~~~v~~~~~s~~--~~~l--~s~~--~d~~v~vwd~~~~~~~ 692 (1249)
T 3sfz_A 624 SQDGQRIASCG-ADKTLQVFKAETGEKLLDIKAH----EDEVLCCAFSSD--DSYI--ATCS--ADKKVKIWDSATGKLV 692 (1249)
T ss_dssp CTTSSEEEEEE-TTSCEEEEETTTCCEEEEECCC----SSCEEEEEECTT--SSEE--EEEE--TTSEEEEEETTTCCEE
T ss_pred CCCCCEEEEEe-CCCeEEEEECCCCCEEEEeccC----CCCEEEEEEecC--CCEE--EEEe--CCCeEEEEECCCCceE
Confidence 44554444433 66789999999987543 3321 123445677762 3332 2222 3467999999887543
Q ss_pred eccccCCCCCceeeeccceEEEe---CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCeEEEE
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSR---GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGALNYA 255 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~---~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~~ 255 (368)
..-..... +.. ++.+. ++.+...+. ++.|..+|+.+.+....+.-.. .. ...+. ..+|.+.+.
T Consensus 693 ~~~~~~~~--~v~-----~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~---~~--v~~~~~sp~~~~l~s 760 (1249)
T 3sfz_A 693 HTYDEHSE--QVN-----CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT---NS--VNHCRFSPDDELLAS 760 (1249)
T ss_dssp EEEECCSS--CEE-----EEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS---SC--EEEEEECSSTTEEEE
T ss_pred EEEcCCCC--cEE-----EEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC---CC--EEEEEEecCCCEEEE
Confidence 22111110 010 12220 122222222 6789999999887652222111 11 11223 336777777
Q ss_pred EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeecccc--cc---CccccceEEEEEecCCCEEEEeeCCeE
Q 043460 256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWG--NK---LHVFGLTRFYNIHPNSDIIFLGSCDMI 330 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~--~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~ 330 (368)
...+..+.+|.+..... ...+...... .. ......+.-+.+.+++..++......+
T Consensus 761 ~s~dg~v~vwd~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v 821 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSANE-------------------RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 821 (1249)
T ss_dssp EESSSEEEEEEGGGTEE-------------------EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred EECCCeEEEEeCCCCcc-------------------cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence 77788999998876421 1111110000 00 000012223456677888877777889
Q ss_pred EEEECCCCeEEE
Q 043460 331 YRYHLKTNKMEL 342 (368)
Q Consensus 331 ~~ydl~t~~~~~ 342 (368)
..||+.+.+...
T Consensus 822 ~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 822 LLFDIHTSGLLA 833 (1249)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEEecCCCcee
Confidence 999998877543
No 107
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=76.32 E-value=70 Score=32.45 Aligned_cols=162 Identities=12% Similarity=0.103 Sum_probs=88.5
Q ss_pred CCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEE--eCCeEEEEEe--CCe
Q 043460 140 ASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYS--RGGILYNLTY--RST 215 (368)
Q Consensus 140 ~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~--~~G~lywl~~--~~~ 215 (368)
....++++|+. . -+|+.... ....++++++....-+.+... . . ..-.++.+ .+|.|||... ...
T Consensus 471 ~~P~GLAvD~~-~--~~LY~tD~--~~~~I~v~~ldG~~~~~l~~~---~--l--~~P~gIaVDp~~g~LYwtD~g~~~~ 538 (791)
T 3m0c_C 471 QAPDGLAVDWI-H--SNIYWTDS--VLGTVSVADTKGVKRKTLFRE---N--G--SKPRAIVVDPVHGFMYWTDWGTPAK 538 (791)
T ss_dssp SCCCEEEEETT-T--TEEEEEET--TTTEEEEEETTSSSEEEEEEC---T--T--CCEEEEEEETTTTEEEEEECSSSCE
T ss_pred CCcceeeeeec-C--CcEEEEec--CCCeEEEEeCCCCeEEEEEeC---C--C--CCcceEEEecCCCCEEEecCCCCCe
Confidence 34568888873 2 23444432 356788888876554333210 0 1 11123444 1589999875 368
Q ss_pred EEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe--eCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEE
Q 043460 216 ILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL--CKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKH 293 (368)
Q Consensus 216 il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~--~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~ 293 (368)
|.++++...... .+-. ..... ...|+. .+|+||++..... .|++.+-.+.+ ....+.
T Consensus 539 I~~~~~dG~~~~-~lv~-~~l~~---P~GLavD~~~~~LYwaD~~~~--~I~~~d~dG~~--------------~~~v~~ 597 (791)
T 3m0c_C 539 IKKGGLNGVDIY-SLVT-ENIQW---PNGITLDLLSGRLYWVDSKLH--SISSIDVNGGN--------------RKTILE 597 (791)
T ss_dssp EEEEETTSCCEE-EEEC-SSCSC---EEEEEEETTTTEEEEEETTTT--EEEEEETTSCS--------------CEEEEE
T ss_pred EEEEecCCCceE-EEEe-CCCCC---ceEEEEecCCCeEEEEeCCCC--cEEEEecCCCc--------------eEEEec
Confidence 999999877665 3321 11111 224444 3789999876544 56666654220 222221
Q ss_pred EeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCe-EEEecc
Q 043460 294 SICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNK-MELFST 345 (368)
Q Consensus 294 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~-~~~v~~ 345 (368)
. ...+ ..++++...++-||+. ....|.++|..+++ .+.+..
T Consensus 598 ~--~~~l---------~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 598 D--EKRL---------AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp C--TTTT---------SSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred C--CCcc---------CCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence 0 0111 2445555556678887 55789999976664 444543
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=76.07 E-value=38 Score=29.23 Aligned_cols=203 Identities=11% Similarity=0.037 Sum_probs=101.7
Q ss_pred EEEEeecCCCeeEEEEcc-cCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC------
Q 043460 106 LILLGSSLSKHRYYVCNP-LTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT------ 178 (368)
Q Consensus 106 lll~~~~~~~~~~~v~NP-~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~------ 178 (368)
+|+... ....+.+||. .+++...+.... .......+.+.| +.+ ++... ....+.+|+.++..
T Consensus 71 ~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~--~~~~v~~l~~~~---~~~-l~s~~---~d~~i~iwd~~~~~~~~~~~ 139 (342)
T 1yfq_A 71 QIYVGT--VQGEILKVDLIGSPSFQALTNNE--ANLGICRICKYG---DDK-LIAAS---WDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp EEEEEE--TTSCEEEECSSSSSSEEECBSCC--CCSCEEEEEEET---TTE-EEEEE---TTSEEEEECHHHHTTBCEEE
T ss_pred EEEEEc--CCCeEEEEEeccCCceEeccccC--CCCceEEEEeCC---CCE-EEEEc---CCCeEEEEcccccccccccc
Confidence 344443 5678999999 888876665411 111233455655 222 22222 24567777765400
Q ss_pred -ceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCC-Ce--EEEEEeCCCCCCCCCCceeEEee--CCeE
Q 043460 179 -WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEA-LS--EAEIIEVPDKNNHPCDSEVIGLC--KGAL 252 (368)
Q Consensus 179 -W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~-~~--~~~~~~lP~~~~~~~~~~~l~~~--~G~L 252 (368)
.+.... .... ..-.++.+....+..-..++.|..+|+.+ .. .. ....+.... ...+... +|.+
T Consensus 140 ~~~~~~~-~~~~-----~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~----i~~i~~~~~~~~~ 208 (342)
T 1yfq_A 140 KNLNSNN-TKVK-----NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT-IEESGLKYQ----IRDVALLPKEQEG 208 (342)
T ss_dssp EESCSSS-SSSC-----CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCE-EEECSCSSC----EEEEEECSGGGCE
T ss_pred cCCeeeE-EeeC-----CceEEEEecCCcEEEEeCCCeEEEEECCccccccce-eeecCCCCc----eeEEEECCCCCCE
Confidence 111110 0000 00113344133333333377999999988 33 33 333332211 2233333 6788
Q ss_pred EEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccc-cccCccccceEEEEEecCCCEEEEe-eCCeE
Q 043460 253 NYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEW-GNKLHVFGLTRFYNIHPNSDIIFLG-SCDMI 330 (368)
Q Consensus 253 ~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~ 330 (368)
.++...+..+.||.++...... .......+....- .........+.-+.+.+++..++.. .++.+
T Consensus 209 l~~~~~dg~i~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 275 (342)
T 1yfq_A 209 YACSSIDGRVAVEFFDDQGDDY-------------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII 275 (342)
T ss_dssp EEEEETTSEEEEEECCTTCCST-------------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred EEEEecCCcEEEEEEcCCCccc-------------ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceE
Confidence 7777888899999987751000 1112222221100 0000000234456677777766665 56689
Q ss_pred EEEECCCCeEEEe
Q 043460 331 YRYHLKTNKMELF 343 (368)
Q Consensus 331 ~~ydl~t~~~~~v 343 (368)
..||+++++....
T Consensus 276 ~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 276 SCWNLQTRKKIKN 288 (342)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEcCccHhHhhh
Confidence 9999998886443
No 109
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=75.69 E-value=44 Score=29.79 Aligned_cols=191 Identities=10% Similarity=0.076 Sum_probs=95.7
Q ss_pred CCeeEEEEcccCcc------ceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCC
Q 043460 114 SKHRYYVCNPLTKQ------CVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVK 187 (368)
Q Consensus 114 ~~~~~~v~NP~T~~------~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~ 187 (368)
....+.+||..+++ .................+.+.|. +...++... ....+.+|+.+++.-...-....
T Consensus 134 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~ 208 (416)
T 2pm9_A 134 NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQS--LAHVFASAG---SSNFASIWDLKAKKEVIHLSYTS 208 (416)
T ss_dssp SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSS--CTTEEEEES---SSSCEEEEETTTTEEEEEECCCC
T ss_pred CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCC--CCcEEEEEc---CCCCEEEEECCCCCcceEEeccc
Confidence 56688999998876 22211111112234556777762 233333322 24568899988875433221110
Q ss_pred CCCceeeeccceEEEe-CC-eEEEEEe-CC---eEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEEEECC
Q 043460 188 PRRPVSFYVLQSVYSR-GG-ILYNLTY-RS---TILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYASRNQ 259 (368)
Q Consensus 188 ~~~p~~~~~~~~v~~~-~G-~lywl~~-~~---~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~~~~~ 259 (368)
...... ..-.++.+. +| .+...+. ++ .|..+|+.+..-. ...+....... ...+..+ +|.+.+....+
T Consensus 209 ~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~~--v~~~~~s~~~~~~l~s~~~d 284 (416)
T 2pm9_A 209 PNSGIK-QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-LQTLNQGHQKG--ILSLDWCHQDEHLLLSSGRD 284 (416)
T ss_dssp CSSCCC-CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-SBCCCSCCSSC--EEEEEECSSCSSCEEEEESS
T ss_pred cccccC-CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-cEEeecCccCc--eeEEEeCCCCCCeEEEEeCC
Confidence 000000 000122221 33 3444444 44 8999999875321 11222011111 2233332 67777777778
Q ss_pred CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCC-CEEEEe-eCCeEEEEECCC
Q 043460 260 STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNS-DIIFLG-SCDMIYRYHLKT 337 (368)
Q Consensus 260 ~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~~~ydl~t 337 (368)
..+.||-++.. ..+..+.... ..+.-+.+.+++ .+++.. .+..+..||+++
T Consensus 285 g~v~~wd~~~~-------------------~~~~~~~~~~--------~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 285 NTVLLWNPESA-------------------EQLSQFPARG--------NWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp SEEEEECSSSC-------------------CEEEEEECSS--------SCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred CCEEEeeCCCC-------------------ccceeecCCC--------CceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 89999976652 2233333111 112335677776 565555 567899999987
Q ss_pred CeE
Q 043460 338 NKM 340 (368)
Q Consensus 338 ~~~ 340 (368)
.+.
T Consensus 338 ~~~ 340 (416)
T 2pm9_A 338 LTN 340 (416)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 110
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=74.88 E-value=63 Score=31.89 Aligned_cols=33 Identities=9% Similarity=0.029 Sum_probs=24.5
Q ss_pred eEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeC
Q 043460 199 SVYSRGGILYNLTYRSTILRYNIEALSEAEIIEV 232 (368)
Q Consensus 199 ~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~l 232 (368)
.++. +|.+|.-..++.+.++|..+++-....+.
T Consensus 113 ~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 113 VALW-GDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp CEEE-BTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eEEE-CCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 4667 99999987788999999988754423343
No 111
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=73.37 E-value=42 Score=28.49 Aligned_cols=148 Identities=7% Similarity=0.099 Sum_probs=75.3
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
|.+++|-+. ....+.|||..|++...+-.... .......+.+.|. +.+-+ ... ....+.+++.+++.-..
T Consensus 34 S~~~~lAvg---~D~tV~iWd~~tg~~~~~~~~~~-~~~~V~~v~~~~~--~~~l~--sgs--~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 34 SSGNVLAVA---LDNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKE--GNYLA--VGT--SSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp CTTSEEEEE---ETTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTT--SSEEE--EEE--TTSEEEEEETTTTEEEE
T ss_pred CCCCEEEEE---eCCEEEEEECCCCCEEEEEEecC-CCCeEEEEEECCC--CCEEE--EEE--CCCcEEEeecCCceeEE
Confidence 567766554 35689999999998765422110 1112345667762 34332 222 34578889988875322
Q ss_pred ccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCC
Q 043460 182 RKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQS 260 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~ 260 (368)
....... ....... ++.+-..+. ...+...+..+.... ...+....... .......+|.+.+....+.
T Consensus 104 ~~~~h~~-------~~~~~~~-~~~~l~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~l~s~~~d~ 172 (318)
T 4ggc_A 104 NMTSHSA-------RVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEV--CGLRWAPDGRHLASGGNDN 172 (318)
T ss_dssp EEECCSS-------CEEEEEE-ETTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSCE--EEEEECTTSSEEEEEETTS
T ss_pred EecCccc-------eEEEeec-CCCEEEEEecCCceEeeecCCCcee-EEEEcCccCce--EEEEEcCCCCEEEEEecCc
Confidence 2111100 0112333 333322222 455555666555443 32222211110 1122234677777777788
Q ss_pred eEEEEEEccC
Q 043460 261 TLLIWQLDDH 270 (368)
Q Consensus 261 ~~~IW~l~~~ 270 (368)
.+.||-+...
T Consensus 173 ~i~iwd~~~~ 182 (318)
T 4ggc_A 173 LVNVWPSAPG 182 (318)
T ss_dssp CEEEEESSCB
T ss_pred ceeEEECCCC
Confidence 9999988754
No 112
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=72.88 E-value=50 Score=29.15 Aligned_cols=199 Identities=7% Similarity=-0.005 Sum_probs=96.2
Q ss_pred CCeeEEEEcccCccceecCCCC----------cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAR----------EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK 183 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~----------~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~ 183 (368)
....+.|||..+++........ .........+.+.|. .+. .++... ....+.+|+..++.-....
T Consensus 64 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~-~l~s~~---~d~~i~iwd~~~~~~~~~~ 138 (408)
T 4a11_B 64 SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTG-MFTSSS---FDKTLKVWDTNTLQTADVF 138 (408)
T ss_dssp TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-CTT-CEEEEE---TTSEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-CCc-EEEEEe---CCCeEEEeeCCCCccceec
Confidence 4567888888776654432110 012223345566662 222 222222 2467888988877543322
Q ss_pred ccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCe-EEEEEECCC
Q 043460 184 VSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGA-LNYASRNQS 260 (368)
Q Consensus 184 ~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~-L~~~~~~~~ 260 (368)
.. .. +.......+..- ++.+...+. ++.|..+|+.+.+....+..... . ...+... +|. +.+....+.
T Consensus 139 ~~-~~--~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~--v~~~~~~~~~~~ll~~~~~dg 209 (408)
T 4a11_B 139 NF-EE--TVYSHHMSPVST-KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ---E--ILAVSWSPRYDYILATASADS 209 (408)
T ss_dssp EC-SS--CEEEEEECSSCS-SCCEEEEEESSSSEEEEESSSSCCCEEECCCCS---C--EEEEEECSSCTTEEEEEETTS
T ss_pred cC-CC--ceeeeEeecCCC-CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC---c--EEEEEECCCCCcEEEEEcCCC
Confidence 11 10 011000000111 222333333 77899999987755413321111 1 1233333 454 666777788
Q ss_pred eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee---ecccc-ccCccccceEEEEEecCCCEEEEe-eCCeEEEEEC
Q 043460 261 TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC---MDEWG-NKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHL 335 (368)
Q Consensus 261 ~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~---~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl 335 (368)
.+.||-+..... .......-. ..... ........+.-+.+.+++..++.. .+..+..||+
T Consensus 210 ~i~i~d~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 274 (408)
T 4a11_B 210 RVKLWDVRRASG---------------CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274 (408)
T ss_dssp CEEEEETTCSSC---------------CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cEEEEECCCCCc---------------ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 999998876422 111100000 00000 000001334556677788777766 5678999999
Q ss_pred CCCeEE
Q 043460 336 KTNKME 341 (368)
Q Consensus 336 ~t~~~~ 341 (368)
++.+..
T Consensus 275 ~~~~~~ 280 (408)
T 4a11_B 275 SNGENT 280 (408)
T ss_dssp TTCCBC
T ss_pred CCCccc
Confidence 987643
No 113
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=72.62 E-value=40 Score=31.23 Aligned_cols=108 Identities=8% Similarity=0.078 Sum_probs=58.3
Q ss_pred CCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCe-EEEEEECC---CeEEEEEEccCCCCCCCCC
Q 043460 204 GGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGA-LNYASRNQ---STLLIWQLDDHRHHSNSHG 278 (368)
Q Consensus 204 ~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~-L~~~~~~~---~~~~IW~l~~~~~~~~~~~ 278 (368)
+|.||+......|.+||+.+.+.. .+..+. .. ...++. .+|. |++..... ....+|...+.
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~--~~---P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-------- 214 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVS-TVYSGL--SK---VRTICWTHEADSMIITNDQNNNDRPNNYILTRES-------- 214 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEE-EEECCC--SC---EEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG--------
T ss_pred CCeEEEEeCCCcEEEEECCCCEEE-EEecCC--CC---cceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC--------
Confidence 488999875578999999998887 443211 11 223443 3566 77776632 22334444332
Q ss_pred CccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEEe
Q 043460 279 SNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMELF 343 (368)
Q Consensus 279 ~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~v 343 (368)
.|.....+. .+. ...-+++.+.++.||+. ...++++||+++.+.+.+
T Consensus 215 ---------~~~~~~~l~--~~~-------~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 215 ---------GFKVITELT--KGQ-------NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL 263 (430)
T ss_dssp ---------TSCSEEEEE--ECS-------SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ---------ceeeeeeec--cCC-------CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 233222222 111 11224566633445554 456788888887776433
No 114
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=72.59 E-value=1e+02 Score=32.56 Aligned_cols=180 Identities=9% Similarity=0.082 Sum_probs=96.9
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....+.+||..+++....... .......+.+.|. +.+ ++... ....+.+|+..++........ . . +.
T Consensus 981 ~~g~i~i~d~~~~~~~~~~~~---h~~~v~~l~~s~d--g~~-l~s~~---~dg~i~vwd~~~~~~~~~~~~-~-~-~v- 1047 (1249)
T 3sfz_A 981 EDGAIKIIELPNNRVFSSGVG---HKKAVRHIQFTAD--GKT-LISSS---EDSVIQVWNWQTGDYVFLQAH-Q-E-TV- 1047 (1249)
T ss_dssp TTSCCEEEETTTTSCEEECCC---CSSCCCCEEECSS--SSC-EEEEC---SSSBEEEEETTTTEEECCBCC-S-S-CE-
T ss_pred CCCCEEEEEcCCCceeeeccc---CCCceEEEEECCC--CCE-EEEEc---CCCEEEEEECCCCceEEEecC-C-C-cE-
Confidence 556788888877765443221 1123445667662 233 22222 245788999988765533210 0 0 00
Q ss_pred eeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCC
Q 043460 194 FYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHH 273 (368)
Q Consensus 194 ~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~ 273 (368)
.......++.+.-...++.|..+|+.+.+....+....... .......+|.+.+....+..+.||.++....
T Consensus 1048 ---~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v----~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~- 1119 (1249)
T 3sfz_A 1048 ---KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV----LSCAISSDATKFSSTSADKTAKIWSFDLLSP- 1119 (1249)
T ss_dssp ---EEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCC----CCEEECSSSSSCEEECCSSCCCEECSSSSSC-
T ss_pred ---EEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcE----EEEEECCCCCEEEEEcCCCcEEEEECCCcce-
Confidence 11112214554444447889999998876542333322211 1122334677666666777899998765321
Q ss_pred CCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeE
Q 043460 274 SNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKM 340 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~ 340 (368)
. ..+. ... ..+.-+++.+++..+... .++.+..||+++.+.
T Consensus 1120 --------------~----~~l~-----~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1120 --------------L----HELK-----GHN---GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp --------------S----BCCC-----CCS---SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred --------------e----eeec-----cCC---CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 1 1111 000 224446677777777666 456788899988764
No 115
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=72.32 E-value=73 Score=30.82 Aligned_cols=192 Identities=7% Similarity=-0.016 Sum_probs=98.5
Q ss_pred eeEEEEcccC------ccceecC-CCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC-----CCcEEEEEeCC-CCCceec
Q 043460 116 HRYYVCNPLT------KQCVAIP-KAREDVLASPPALAFHPCDSSHYKIIRFLRAR-----MDPEVDIFSSE-NKTWITR 182 (368)
Q Consensus 116 ~~~~v~NP~T------~~~~~lP-~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~-----~~~~~~vyss~-~~~W~~~ 182 (368)
.+++++|..+ ++.+.|. .... ......+.| .+.+-++ ..... ....+.+++.+ ++.+...
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~Sp--DG~~la~-~~~~~~~~~~~~~~i~~~d~~~~g~~~~~ 233 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHR----FVTGPRLSP--DGRQAVW-LAWDHPRMPWEGTELKTARVTEDGRFADT 233 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSS----EECCCEECT--TSSEEEE-EEECTTCCTTTCEEEEEEEECTTSCEEEE
T ss_pred eEEEEEECCCCccccCCceeEEEecCCC----cccCceECC--CCCEEEE-EECCCCCCCCCCcEEEEEEECCCCccccc
Confidence 5799999998 7777775 3221 112334445 2333322 22221 22578888888 5744322
Q ss_pred cccCCCCCceeeeccceEEEeCCeEEEEEeC-C--eEEEEEcCCCeEEEEEeCCCCCCC-C--CCceeEEee-CCeEEEE
Q 043460 183 KVSVKPRRPVSFYVLQSVYSRGGILYNLTYR-S--TILRYNIEALSEAEIIEVPDKNNH-P--CDSEVIGLC-KGALNYA 255 (368)
Q Consensus 183 ~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~-~--~il~fD~~~~~~~~~~~lP~~~~~-~--~~~~~l~~~-~G~L~~~ 255 (368)
....... ...........+|.+|+.... + .|..+|+.+.++...+........ . .+...+... +|++++.
T Consensus 234 ~~l~~~~---~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 234 RTLLGGP---EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEET---TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred EEeCCCC---CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 2110000 000011122217888887762 2 799999988877623332221110 0 001233444 7888877
Q ss_pred EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCC-EEEEe-e---CCeE
Q 043460 256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSD-IIFLG-S---CDMI 330 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~---~~~~ 330 (368)
... ....||.++..++ .. ..+.... ..+..+. ..+++ ++|.. + ...+
T Consensus 311 ~~~-~~~~l~~~d~~~~---------------~~---~~l~~~~--------~~~~~~~-s~~~~~~~~~~~~~~~~~~i 362 (662)
T 3azo_A 311 HGK-GAAVLGILDPESG---------------EL---VDAAGPW--------TEWAATL-TVSGTRAVGVAASPRTAYEV 362 (662)
T ss_dssp EBS-SSCEEEEEETTTT---------------EE---EECCSSC--------CEEEEEE-EEETTEEEEEEEETTEEEEE
T ss_pred EEc-CccEEEEEECCCC---------------cE---EEecCCC--------CeEEEEE-ecCCCEEEEEEcCCCCCCEE
Confidence 777 8899999986543 32 2232110 1122221 23344 44443 2 2379
Q ss_pred EEEECCCCeEEEecc
Q 043460 331 YRYHLKTNKMELFST 345 (368)
Q Consensus 331 ~~ydl~t~~~~~v~~ 345 (368)
+.+|+++++.+.+..
T Consensus 363 ~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 363 VELDTVTGRARTIGA 377 (662)
T ss_dssp EEEETTTCCEEEEES
T ss_pred EEEECCCCceEEeec
Confidence 999999998887754
No 116
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=70.34 E-value=57 Score=28.75 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=34.9
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEE-EEEeCCCCCCCCCCceeEEe--eCCeEEEEEECCCeEEEEEEc
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEA-EIIEVPDKNNHPCDSEVIGL--CKGALNYASRNQSTLLIWQLD 268 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~-~~~~lP~~~~~~~~~~~l~~--~~G~L~~~~~~~~~~~IW~l~ 268 (368)
+|.|||... ...|.++++...... ..+..... . ...++. .+|.|++.......+.+..++
T Consensus 46 ~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~--~---p~glavd~~~g~ly~~d~~~~~I~~~~~d 109 (318)
T 3sov_A 46 HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL--S---PDGLACDWLGEKLYWTDSETNRIEVSNLD 109 (318)
T ss_dssp GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS--C---CCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC--C---ccEEEEEcCCCeEEEEECCCCEEEEEECC
Confidence 589999876 678999999876321 02221111 1 113333 367888877665555554443
No 117
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=70.17 E-value=53 Score=28.34 Aligned_cols=160 Identities=11% Similarity=0.106 Sum_probs=90.1
Q ss_pred CeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEc
Q 043460 143 PALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNI 221 (368)
Q Consensus 143 ~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~ 221 (368)
.|+.+++. + +++..........+.+++..+++=...- .++.. ....++.+.++.+|.+.. .+.+.++|.
T Consensus 24 ~Gl~~~~d---g-~Lyvstg~~~~s~v~~iD~~tg~v~~~i-~l~~~-----~fgeGi~~~g~~lyv~t~~~~~v~viD~ 93 (266)
T 2iwa_A 24 QGLVYAEN---D-TLFESTGLYGRSSVRQVALQTGKVENIH-KMDDS-----YFGEGLTLLNEKLYQVVWLKNIGFIYDR 93 (266)
T ss_dssp EEEEECST---T-EEEEEECSTTTCEEEEEETTTCCEEEEE-ECCTT-----CCEEEEEEETTEEEEEETTCSEEEEEET
T ss_pred ccEEEeCC---C-eEEEECCCCCCCEEEEEECCCCCEEEEE-ecCCC-----cceEEEEEeCCEEEEEEecCCEEEEEEC
Confidence 47888872 2 3443322224678999999998733221 11111 122344442778999987 789999999
Q ss_pred CCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeecccc
Q 043460 222 EALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWG 301 (368)
Q Consensus 222 ~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~ 301 (368)
.+.+-...++.+ ... ...++..+++|++.. . .. .|++++-.+ -..+.+|....-+
T Consensus 94 ~t~~v~~~i~~g-~~~----g~glt~Dg~~l~vs~-g-s~-~l~viD~~t-----------------~~v~~~I~Vg~~~ 148 (266)
T 2iwa_A 94 RTLSNIKNFTHQ-MKD----GWGLATDGKILYGSD-G-TS-ILYEIDPHT-----------------FKLIKKHNVKYNG 148 (266)
T ss_dssp TTTEEEEEEECC-SSS----CCEEEECSSSEEEEC-S-SS-EEEEECTTT-----------------CCEEEEEECEETT
T ss_pred CCCcEEEEEECC-CCC----eEEEEECCCEEEEEC-C-CC-eEEEEECCC-----------------CcEEEEEEECCCC
Confidence 987665467766 222 224544455677654 2 22 678887642 3344555532111
Q ss_pred ccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEE
Q 043460 302 NKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~ 342 (368)
... ....-+.+. + +.+|.. ....+.+.|++|+++..
T Consensus 149 ~p~---~~~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~ 186 (266)
T 2iwa_A 149 HRV---IRLNELEYI-N-GEVWANIWQTDCIARISAKDGTLLG 186 (266)
T ss_dssp EEC---CCEEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEE
T ss_pred ccc---ccceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEE
Confidence 110 001112223 3 457765 46789999999998643
No 118
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=69.55 E-value=49 Score=27.74 Aligned_cols=195 Identities=10% Similarity=0.120 Sum_probs=102.7
Q ss_pred EecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460 100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW 179 (368)
Q Consensus 100 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W 179 (368)
++..+|.|.+... ....+.++++.++....+-.. ......++++|+. . . +++.... ....+.+++.....-
T Consensus 43 ~d~~~~~ly~~d~-~~~~I~~~~~~g~~~~~~~~~---~~~~p~~ia~d~~-~-~-~lyv~d~--~~~~I~~~~~~g~~~ 113 (267)
T 1npe_A 43 FDCVDKVVYWTDI-SEPSIGRASLHGGEPTTIIRQ---DLGSPEGIALDHL-G-R-TIFWTDS--QLDRIEVAKMDGTQR 113 (267)
T ss_dssp EETTTTEEEEEET-TTTEEEEEESSSCCCEEEECT---TCCCEEEEEEETT-T-T-EEEEEET--TTTEEEEEETTSCSC
T ss_pred EecCCCEEEEEEC-CCCEEEEEecCCCCcEEEEEC---CCCCccEEEEEec-C-C-eEEEEEC--CCCEEEEEEcCCCCE
Confidence 4445677776654 456788889877654433211 1123457888873 2 2 2333322 345778888765432
Q ss_pred eeccccCCCCCceeeeccceEEEe--CCeEEEEEeC---CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeE
Q 043460 180 ITRKVSVKPRRPVSFYVLQSVYSR--GGILYNLTYR---STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGAL 252 (368)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~~v~~~--~G~lywl~~~---~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L 252 (368)
+... .. ......++.+. +|.+||.... ..|.++++...... .+... ... . ...++.. ++.|
T Consensus 114 ~~~~---~~----~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~-~~~~~-~~~-~--P~gia~d~~~~~l 181 (267)
T 1npe_A 114 RVLF---DT----GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQD-NLG-L--PNGLTFDAFSSQL 181 (267)
T ss_dssp EEEE---CS----SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECT-TCS-C--EEEEEEETTTTEE
T ss_pred EEEE---EC----CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE-EEEEC-CCC-C--CcEEEEcCCCCEE
Confidence 2221 10 00111234432 5889998753 57889998766554 33211 111 1 2234443 4678
Q ss_pred EEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeE
Q 043460 253 NYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMI 330 (368)
Q Consensus 253 ~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~ 330 (368)
++......++. +++-.+. . ....+. .+ ..|.++..+++.+|+. ...++
T Consensus 182 yv~d~~~~~I~--~~~~~g~---------------~--~~~~~~--~~---------~~P~gi~~d~~~lyva~~~~~~v 231 (267)
T 1npe_A 182 CWVDAGTHRAE--CLNPAQP---------------G--RRKVLE--GL---------QYPFAVTSYGKNLYYTDWKTNSV 231 (267)
T ss_dssp EEEETTTTEEE--EEETTEE---------------E--EEEEEE--CC---------CSEEEEEEETTEEEEEETTTTEE
T ss_pred EEEECCCCEEE--EEecCCC---------------c--eEEEec--CC---------CCceEEEEeCCEEEEEECCCCeE
Confidence 88877655544 4443211 1 111111 11 1234444446777877 45789
Q ss_pred EEEECCCCeE-EEecc
Q 043460 331 YRYHLKTNKM-ELFST 345 (368)
Q Consensus 331 ~~ydl~t~~~-~~v~~ 345 (368)
.++|+++.+. +.+..
T Consensus 232 ~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 232 IAMDLAISKEMDTFHP 247 (267)
T ss_dssp EEEETTTTEEEEEECC
T ss_pred EEEeCCCCCceEEEcc
Confidence 9999998775 45554
No 119
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=69.38 E-value=90 Score=30.71 Aligned_cols=163 Identities=11% Similarity=0.095 Sum_probs=86.1
Q ss_pred eeEEcCCCCCCeEEEEEEEeCC-CcEEEEEeCCC------C--CceeccccCCCCCceeeeccceEEEeCCeEEEEEe--
Q 043460 144 ALAFHPCDSSHYKIIRFLRARM-DPEVDIFSSEN------K--TWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-- 212 (368)
Q Consensus 144 ~l~~d~~~~~~ykvv~~~~~~~-~~~~~vyss~~------~--~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-- 212 (368)
+..+.| .+.|-++....... ...+.+++..+ + .++........ . ...+.-.++.+|+.+.
T Consensus 237 ~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~---~----~~~~s~dg~~l~~~s~~~ 307 (710)
T 2xdw_A 237 GAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG---E----YDYVTNEGTVFTFKTNRH 307 (710)
T ss_dssp EEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS---C----EEEEEEETTEEEEEECTT
T ss_pred EEEEcC--CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc---E----EEEEeccCCEEEEEECCC
Confidence 344444 34554444332211 45677777765 4 46555421110 0 1123332567888876
Q ss_pred --CCeEEEEEcCCC---eEEEEEeCCCCCCCCCCceeEEee-CCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCC
Q 043460 213 --RSTILRYNIEAL---SEAEIIEVPDKNNHPCDSEVIGLC-KGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGA 286 (368)
Q Consensus 213 --~~~il~fD~~~~---~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~ 286 (368)
...|..+|+.+. .|+ .+-.+... .. ...+... ++.|++....+...+||+++-.++
T Consensus 308 ~~~~~l~~~d~~~~~~~~~~-~l~~~~~~-~~--~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g-------------- 369 (710)
T 2xdw_A 308 SPNYRLINIDFTDPEESKWK-VLVPEHEK-DV--LEWVACVRSNFLVLCYLHDVKNTLQLHDLATG-------------- 369 (710)
T ss_dssp CTTCEEEEEETTSCCGGGCE-EEECCCSS-CE--EEEEEEETTTEEEEEEEETTEEEEEEEETTTC--------------
T ss_pred CCCCEEEEEeCCCCCcccce-eccCCCCC-Ce--EEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--------------
Confidence 246999999875 466 33222111 11 1123445 778888877777777887775322
Q ss_pred CceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-----eCCeEEEEECCCCe--EEEec
Q 043460 287 RSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-----SCDMIYRYHLKTNK--MELFS 344 (368)
Q Consensus 287 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~ydl~t~~--~~~v~ 344 (368)
. .+..+..+ . ..+.-+++.++++.+++. ....++.||+++++ .+.+.
T Consensus 370 -~--~~~~l~~~--~------~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 370 -A--LLKIFPLE--V------GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp -C--EEEEECCC--S------SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEE
T ss_pred -C--EEEecCCC--C------ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEee
Confidence 2 12334322 1 112223445566666654 45689999999877 55443
No 120
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=69.20 E-value=93 Score=30.79 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=22.9
Q ss_pred eEEEeCCeEEEEEeCCeEEEEEcCCCeEE
Q 043460 199 SVYSRGGILYNLTYRSTILRYNIEALSEA 227 (368)
Q Consensus 199 ~v~~~~G~lywl~~~~~il~fD~~~~~~~ 227 (368)
.++. +|.||.-..++.+.++|..+++-.
T Consensus 117 ~~~~-~g~v~v~~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 117 VAVW-KGKVYVGVLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp CEEE-TTEEEEECTTSEEEEEETTTCCEE
T ss_pred cEEE-CCEEEEEccCCEEEEEECCCCCEe
Confidence 4667 999999887899999999887543
No 121
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=68.96 E-value=54 Score=27.93 Aligned_cols=142 Identities=16% Similarity=0.144 Sum_probs=83.5
Q ss_pred CCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCce
Q 043460 165 MDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSE 243 (368)
Q Consensus 165 ~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~ 243 (368)
+...+.+++.++++=..... ++.. ..+.++...++.||.+.. .+.+.+||..+.+....++.|.. ..
T Consensus 41 g~S~v~~vD~~tgkv~~~~~-l~~~-----~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~------Gw 108 (243)
T 3mbr_X 41 GRSSVRKVDLETGRILQRAE-VPPP-----YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE------GW 108 (243)
T ss_dssp TSCEEEEEETTTCCEEEEEE-CCTT-----CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSC------CC
T ss_pred CCceEEEEECCCCCEEEEEe-CCCC-----cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC------ce
Confidence 45689999999986433321 1111 223444443889999987 78999999999877547777642 23
Q ss_pred eEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEE
Q 043460 244 VIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIF 323 (368)
Q Consensus 244 ~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 323 (368)
.|+..+++|++... .. .|++++-.+. ..+.+|....-+... ....-+-.. ++.||
T Consensus 109 glt~dg~~L~vSdg-s~--~l~~iDp~t~-----------------~~~~~I~V~~~g~~~---~~lNeLe~~--~G~ly 163 (243)
T 3mbr_X 109 ALTSDDSHLYMSDG-TA--VIRKLDPDTL-----------------QQVGSIKVTAGGRPL---DNLNELEWV--NGELL 163 (243)
T ss_dssp EEEECSSCEEEECS-SS--EEEEECTTTC-----------------CEEEEEECEETTEEC---CCEEEEEEE--TTEEE
T ss_pred EEeeCCCEEEEECC-CC--eEEEEeCCCC-----------------eEEEEEEEccCCccc---ccceeeEEe--CCEEE
Confidence 55555667777754 22 4778876432 234455432111000 001101111 34477
Q ss_pred Ee--eCCeEEEEECCCCeEEEe
Q 043460 324 LG--SCDMIYRYHLKTNKMELF 343 (368)
Q Consensus 324 ~~--~~~~~~~ydl~t~~~~~v 343 (368)
.. ....+.+.|++|+++...
T Consensus 164 anvw~s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASGKVVAW 185 (243)
T ss_dssp EEETTTTEEEEECTTTCBEEEE
T ss_pred EEECCCCeEEEEECCCCCEEEE
Confidence 65 567899999999997543
No 122
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=68.94 E-value=64 Score=28.79 Aligned_cols=193 Identities=11% Similarity=0.090 Sum_probs=101.2
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
+.+|-+++... ....+.|||..+++....-.. .......+.+.|. +. .++ ... ....+.+|+.+++.-..
T Consensus 106 ~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~--~~-~l~-s~s--~d~~i~iwd~~~~~~~~ 175 (420)
T 3vl1_A 106 KLQMRRFILGT-TEGDIKVLDSNFNLQREIDQA---HVSEITKLKFFPS--GE-ALI-SSS--QDMQLKIWSVKDGSNPR 175 (420)
T ss_dssp CSSSCEEEEEE-TTSCEEEECTTSCEEEEETTS---SSSCEEEEEECTT--SS-EEE-EEE--TTSEEEEEETTTCCCCE
T ss_pred ecCCCEEEEEE-CCCCEEEEeCCCcceeeeccc---ccCccEEEEECCC--CC-EEE-EEe--CCCeEEEEeCCCCcCce
Confidence 33444443332 567899999988877664221 1123445677772 23 222 222 35678999988764211
Q ss_pred ccccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeE--------------
Q 043460 182 RKVSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVI-------------- 245 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l-------------- 245 (368)
.-..... +. .++.+. +|.....+. ++.|..+|+.+.+....+..+...... ...+
T Consensus 176 ~~~~h~~--~v-----~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~ 246 (420)
T 3vl1_A 176 TLIGHRA--TV-----TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG--VNSIALFVGTDRQLHEIS 246 (420)
T ss_dssp EEECCSS--CE-----EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCC--EEEEEEEECCCSSCGGGC
T ss_pred EEcCCCC--cE-----EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCC--ccEEEEecCCcceeeecc
Confidence 1100000 00 112221 454333443 678999999987665244433221111 0011
Q ss_pred --------EeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEec
Q 043460 246 --------GLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHP 317 (368)
Q Consensus 246 --------~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 317 (368)
...+|.+.++...+..+.||-+..... ...+... .. ..+.-+.+.+
T Consensus 247 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-------------------~~~~~~~-~~------~~v~~~~~~~ 300 (420)
T 3vl1_A 247 TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-------------------TIQLPSK-FT------CSCNSLTVDG 300 (420)
T ss_dssp CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE-------------------EEEECCT-TS------SCEEEEEECS
T ss_pred cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce-------------------eEEcccc-cC------CCceeEEEeC
Confidence 123677777777888899998865321 1222110 00 2244456677
Q ss_pred CCC-EEEEe-eCCeEEEEECCCCe
Q 043460 318 NSD-IIFLG-SCDMIYRYHLKTNK 339 (368)
Q Consensus 318 ~~~-~v~~~-~~~~~~~ydl~t~~ 339 (368)
++. .++.. .+..+..||+++.+
T Consensus 301 ~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 301 NNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTT
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCc
Confidence 776 66655 55788999998764
No 123
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=68.62 E-value=60 Score=28.36 Aligned_cols=191 Identities=12% Similarity=0.164 Sum_probs=99.6
Q ss_pred CCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc--
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW-- 179 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W-- 179 (368)
.+|-+++... ....+.|||..+++... ++... .....+.+.|. +.+ ++ ... ....+.+|+..++.-
T Consensus 65 ~d~~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~----~~v~~~~~s~~--~~~-l~-s~~--~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 65 TDSRLLLSAS-QDGKLIIWDSYTTNKVHAIPLRS----SWVMTCAYAPS--GNY-VA-CGG--LDNICSIYNLKTREGNV 133 (340)
T ss_dssp TTSSEEEEEE-TTTEEEEEETTTCCEEEEEECSS----SCEEEEEECTT--SSE-EE-EEE--TTCEEEEEETTTCSBSC
T ss_pred CCCCEEEEEe-CCCcEEEEECCCCCcceEeecCC----ccEEEEEECCC--CCE-EE-EEe--CCCeEEEEECccCCCcc
Confidence 3444444433 66788999988876543 23221 12334566662 333 22 222 356788888876531
Q ss_pred eeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEEC
Q 043460 180 ITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRN 258 (368)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~ 258 (368)
+..... ... .... ....+..+|.+.--..++.|..+|+.+.+....+.... .. -..+.. .+|.+.+....
T Consensus 134 ~~~~~~-~~h--~~~v-~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~---~~--v~~~~~~~~~~~l~sg~~ 204 (340)
T 1got_B 134 RVSREL-AGH--TGYL-SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT---GD--VMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp EEEEEE-ECC--SSCE-EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS---SC--EEEEEECTTSSEEEEEET
T ss_pred eeEEEe-cCC--CccE-EEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCC---Cc--eEEEEECCCCCEEEEEeC
Confidence 111100 000 0000 01122215554433337889999999887652322111 11 123333 36777777778
Q ss_pred CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCC
Q 043460 259 QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKT 337 (368)
Q Consensus 259 ~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t 337 (368)
+..+.||-+.... .+.++.... ..+.-+.+.+++..++.. .+..+..+|+++
T Consensus 205 d~~v~~wd~~~~~-------------------~~~~~~~h~--------~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 205 DASAKLWDVREGM-------------------CRQTFTGHE--------SDINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp TSCEEEEETTTCS-------------------EEEEECCCS--------SCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCcEEEEECCCCe-------------------eEEEEcCCc--------CCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 8899999876521 122222110 224446677777766665 456788889887
Q ss_pred CeE
Q 043460 338 NKM 340 (368)
Q Consensus 338 ~~~ 340 (368)
.+.
T Consensus 258 ~~~ 260 (340)
T 1got_B 258 DQE 260 (340)
T ss_dssp TEE
T ss_pred CcE
Confidence 764
No 124
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=68.31 E-value=56 Score=27.93 Aligned_cols=147 Identities=9% Similarity=-0.039 Sum_probs=76.7
Q ss_pred CCcEEEEEeCCCCC--ceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCc
Q 043460 165 MDPEVDIFSSENKT--WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDS 242 (368)
Q Consensus 165 ~~~~~~vyss~~~~--W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~ 242 (368)
....+.+++.++|+ |+...... .. .....+.- +|.++. +....+..||+..+... .+..|..... .
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~~--~~----~~~~~~~p-dG~ilv-s~~~~V~~~d~~G~~~W-~~~~~~~~~~---~ 80 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEKG--WE----CNSVAATK-AGEILF-SYSKGAKMITRDGRELW-NIAAPAGCEM---Q 80 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCTT--CC----CCEEEECT-TSCEEE-ECBSEEEEECTTSCEEE-EEECCTTCEE---E
T ss_pred CCCEEEEEECCCCeEEEEeCCCcc--CC----CcCeEECC-CCCEEE-eCCCCEEEECCCCCEEE-EEcCCCCccc---c
Confidence 35677788888875 77654210 00 11112334 787777 55788999999443333 5565422110 1
Q ss_pred eeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEE
Q 043460 243 EVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDII 322 (368)
Q Consensus 243 ~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 322 (368)
..-...+|.++++.... .-.|+.++..++ ..|+.. +... ..... ...+.+....+++++
T Consensus 81 ~~~~~~dG~~lv~~~~~-~~~v~~vd~~Gk--------------~l~~~~--~~~~-~~~~~---~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 81 TARILPDGNALVAWCGH-PSTILEVNMKGE--------------VLSKTE--FETG-IERPH---AQFRQINKNKKGNYL 139 (276)
T ss_dssp EEEECTTSCEEEEEEST-TEEEEEECTTSC--------------EEEEEE--ECCS-CSSGG---GSCSCCEECTTSCEE
T ss_pred ccEECCCCCEEEEecCC-CCEEEEEeCCCC--------------EEEEEe--ccCC-CCccc---ccccCceECCCCCEE
Confidence 12224478877776652 345666665322 034432 2211 10000 111223456677777
Q ss_pred EEe-eCCeEEEEECCCCeEEEec
Q 043460 323 FLG-SCDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 323 ~~~-~~~~~~~ydl~t~~~~~v~ 344 (368)
+.. ....++.||.+.+.+-+..
T Consensus 140 v~~~~~~~v~~~d~~G~~~w~~~ 162 (276)
T 3no2_A 140 VPLFATSEVREIAPNGQLLNSVK 162 (276)
T ss_dssp EEETTTTEEEEECTTSCEEEEEE
T ss_pred EEecCCCEEEEECCCCCEEEEEE
Confidence 665 5678999999844444443
No 125
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=67.62 E-value=59 Score=27.87 Aligned_cols=139 Identities=10% Similarity=0.007 Sum_probs=74.4
Q ss_pred CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeE
Q 043460 166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVI 245 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l 245 (368)
...+..|+..++.-+.... + ..+... ...- +|. +|++....|..||+.+.+++.....+.......-....
T Consensus 34 ~~~i~~~d~~~~~~~~~~~--~-~~~~~i----~~~~-dG~-l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~ 104 (297)
T 3g4e_A 34 AKKVCRWDSFTKQVQRVTM--D-APVSSV----ALRQ-SGG-YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGK 104 (297)
T ss_dssp TTEEEEEETTTCCEEEEEC--S-SCEEEE----EEBT-TSS-EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEeC--C-CceEEE----EECC-CCC-EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEE
Confidence 4567788888775433221 1 111111 1222 677 55566889999999999988233333221110001122
Q ss_pred EeeCCeEEEEEEC---------CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEe
Q 043460 246 GLCKGALNYASRN---------QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIH 316 (368)
Q Consensus 246 ~~~~G~L~~~~~~---------~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~ 316 (368)
...+|+|++.... ...-.||.++... .-..+. . .+. ...-+++.
T Consensus 105 ~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----------------~~~~~~--~--~~~-------~pngi~~s 157 (297)
T 3g4e_A 105 VDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH----------------HVKKYF--D--QVD-------ISNGLDWS 157 (297)
T ss_dssp ECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS----------------CEEEEE--E--EES-------BEEEEEEC
T ss_pred ECCCCCEEEecCCcccccccccCCCcEEEEEECCC----------------CEEEEe--e--ccc-------cccceEEc
Confidence 3447888876642 2346788887642 222211 1 111 12235667
Q ss_pred cCCCEEEEe--eCCeEEEEEC--CCCeE
Q 043460 317 PNSDIIFLG--SCDMIYRYHL--KTNKM 340 (368)
Q Consensus 317 ~~~~~v~~~--~~~~~~~ydl--~t~~~ 340 (368)
+++..+|+. ....+.+||+ ++.++
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 778777776 3567888876 45544
No 126
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=66.94 E-value=66 Score=31.88 Aligned_cols=120 Identities=10% Similarity=0.090 Sum_probs=62.8
Q ss_pred cceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCC------CCCCceeEEeeCCeEEEEEECCCeEEEEEEccC
Q 043460 197 LQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNN------HPCDSEVIGLCKGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 197 ~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~------~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
..++.. +|.||.....+.+.++|..+++-......+.... ........+..+|+|++...+ .+ |..++..
T Consensus 64 ~~P~v~-~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~d-g~--l~AlDa~ 139 (689)
T 1yiq_A 64 ATPIVV-DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLD-GR--LEAIDAK 139 (689)
T ss_dssp CCCEEE-TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT-SE--EEEEETT
T ss_pred ecCEEE-CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccC-CE--EEEEECC
Confidence 346788 9999998877889999998765442333322110 000012234557776665433 33 3444432
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEECCCCeEE
Q 043460 271 RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYHLKTNKME 341 (368)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~ydl~t~~~~ 341 (368)
++ ...|......+...... ....++. . ++.||+.. ...+++||.+|.+..
T Consensus 140 TG-------------~~~W~~~~~~~~~~~~~-----~~~sP~v-~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 196 (689)
T 1yiq_A 140 TG-------------QRAWSVDTRADHKRSYT-----ITGAPRV-V--NGKVVIGNGGAEFGVRGYVTAYDAETGKEA 196 (689)
T ss_dssp TC-------------CEEEEEECCSCTTSCCB-----CCSCCEE-E--TTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred CC-------------CEeeeecCcCCCCCCcc-----ccCCcEE-E--CCEEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence 11 11687654212110000 0112222 2 45666652 468999999998854
No 127
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=66.91 E-value=1e+02 Score=30.26 Aligned_cols=135 Identities=10% Similarity=0.005 Sum_probs=70.6
Q ss_pred CeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 115 KHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
...+...+..+.+... +|-.. .....++.||+. +=+|+.... ....+..++...+..+.+... .
T Consensus 14 ~~~I~~i~l~~~~~~~~~~~~~---~~~~~~l~~d~~---~~~lywtD~--~~~~I~r~~~~g~~~~~v~~~-------g 78 (628)
T 4a0p_A 14 RADIRRISLETNNNNVAIPLTG---VKEASALDFDVT---DNRIYWTDI--SLKTISRAFMNGSALEHVVEF-------G 78 (628)
T ss_dssp TTEEEEEESSCTTCEEECCCCS---CSCEEEEEEETT---TTEEEEEET--TTTEEEEEETTSCSCEEEECS-------S
T ss_pred CCcEEEEECCCCCcceEEEcCC---CCceEEEEEECC---CCEEEEEEC--CCCeEEEEECCCCCcEEEEeC-------C
Confidence 3455555555544332 33221 234568889873 224554433 345667777766555443211 1
Q ss_pred eeccceEEE--eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEEEECCCeEEEEEEc
Q 043460 194 FYVLQSVYS--RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYASRNQSTLLIWQLD 268 (368)
Q Consensus 194 ~~~~~~v~~--~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~~~~~~~~~IW~l~ 268 (368)
...-.++.+ .+|.|||... ...|.++|+....-. .+-- ..... ...++.. +|.||+....+ .-.|++.+
T Consensus 79 ~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~-~l~~-~~l~~---P~~iavdp~~G~lY~tD~g~-~~~I~r~~ 152 (628)
T 4a0p_A 79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ-VLVW-KDLDS---PRALALDPAEGFMYWTEWGG-KPKIDRAA 152 (628)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE-EEEC-SSCCC---EEEEEEETTTTEEEEEECSS-SCEEEEEE
T ss_pred CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE-EEEe-CCCCC---cccEEEccCCCeEEEeCCCC-CCEEEEEe
Confidence 111123333 1699999875 678999999876544 3321 11111 2344443 68888877532 34566555
Q ss_pred cC
Q 043460 269 DH 270 (368)
Q Consensus 269 ~~ 270 (368)
-+
T Consensus 153 ~d 154 (628)
T 4a0p_A 153 MD 154 (628)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 128
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=66.87 E-value=62 Score=27.89 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=82.2
Q ss_pred CCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCce
Q 043460 165 MDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSE 243 (368)
Q Consensus 165 ~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~ 243 (368)
+...+.+++.++++=..... .++. ..+.++...++.||.+.. .+.+.+||+.+.+....++.|.. + .
T Consensus 63 g~S~v~~vD~~Tgkv~~~~~-l~~~-----~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e--G----~ 130 (262)
T 3nol_A 63 GRSSIRKVDIESGKTLQQIE-LGKR-----YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE--G----W 130 (262)
T ss_dssp TEEEEEEECTTTCCEEEEEE-CCTT-----CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--C----C
T ss_pred CCceEEEEECCCCcEEEEEe-cCCc-----cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC--c----e
Confidence 45688999999987433221 1111 223344443889999987 78999999998776547777642 1 2
Q ss_pred eEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEE
Q 043460 244 VIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIF 323 (368)
Q Consensus 244 ~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 323 (368)
.++..++.|++... .=.||+++-.+. ..+.+|....-.... ....-+... +| .||
T Consensus 131 glt~dg~~L~~SdG---s~~i~~iDp~T~-----------------~v~~~I~V~~~g~~~---~~lNELe~~-~G-~ly 185 (262)
T 3nol_A 131 GLTHNDQYLIMSDG---TPVLRFLDPESL-----------------TPVRTITVTAHGEEL---PELNELEWV-DG-EIF 185 (262)
T ss_dssp CEEECSSCEEECCS---SSEEEEECTTTC-----------------SEEEEEECEETTEEC---CCEEEEEEE-TT-EEE
T ss_pred EEecCCCEEEEECC---CCeEEEEcCCCC-----------------eEEEEEEeccCCccc---cccceeEEE-CC-EEE
Confidence 45544556666643 235888887532 234455432101000 001111222 33 577
Q ss_pred Ee--eCCeEEEEECCCCeEEEe
Q 043460 324 LG--SCDMIYRYHLKTNKMELF 343 (368)
Q Consensus 324 ~~--~~~~~~~ydl~t~~~~~v 343 (368)
.. ....+.+.|++|+++...
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~ 207 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGI 207 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEE
T ss_pred EEEccCCeEEEEECCCCcEEEE
Confidence 65 567899999999997643
No 129
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=66.65 E-value=63 Score=27.89 Aligned_cols=198 Identities=13% Similarity=0.109 Sum_probs=98.4
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
+.+|-+++... ....+.|||..+++... +.... .....+.+.|. +.+ ++... ....+.+|+..++.-.
T Consensus 41 s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~--~~~-l~s~~---~dg~i~iwd~~~~~~~ 109 (369)
T 3zwl_B 41 NKEGDLLFSCS-KDSSASVWYSLNGERLGTLDGHT----GTIWSIDVDCF--TKY-CVTGS---ADYSIKLWDVSNGQCV 109 (369)
T ss_dssp CTTSCEEEEEE-SSSCEEEEETTTCCEEEEECCCS----SCEEEEEECTT--SSE-EEEEE---TTTEEEEEETTTCCEE
T ss_pred cCCCCEEEEEe-CCCEEEEEeCCCchhhhhhhhcC----CcEEEEEEcCC--CCE-EEEEe---CCCeEEEEECCCCcEE
Confidence 33454443332 56688999988876554 22111 23345666662 233 22222 3567899998887643
Q ss_pred eccccCCCCCceeeeccceEEEeCCeEEEEEe-C-----CeEEEEEcCCCeEEEEE-eCCCCC-------CCCCCceeEE
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-R-----STILRYNIEALSEAEII-EVPDKN-------NHPCDSEVIG 246 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~-----~~il~fD~~~~~~~~~~-~lP~~~-------~~~~~~~~l~ 246 (368)
..-. .. ...... ...- +|.....+. . +.|..+|+.+......+ ...... ........+.
T Consensus 110 ~~~~-~~-~~v~~~----~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 110 ATWK-SP-VPVKRV----EFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp EEEE-CS-SCEEEE----EECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred EEee-cC-CCeEEE----EEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 3321 11 100111 1111 343333333 3 57777777664321011 110000 0000112222
Q ss_pred -eeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe
Q 043460 247 -LCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG 325 (368)
Q Consensus 247 -~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 325 (368)
..+|.+.++...+..+.+|-+... ...+..+.... ..+.-+.+.+++..++..
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~------------------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNN------------------YEYVDSIDLHE--------KSISDMQFSPDLTYFITS 236 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTT------------------TEEEEEEECCS--------SCEEEEEECTTSSEEEEE
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCC------------------cEeEEEEecCC--------CceeEEEECCCCCEEEEe
Confidence 236777777777788999987652 22333333111 123445667777766665
Q ss_pred -eCCeEEEEECCCCeEEEe
Q 043460 326 -SCDMIYRYHLKTNKMELF 343 (368)
Q Consensus 326 -~~~~~~~ydl~t~~~~~v 343 (368)
.+..+..||+++.+....
T Consensus 237 ~~d~~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 237 SRDTNSFLVDVSTLQVLKK 255 (369)
T ss_dssp ETTSEEEEEETTTCCEEEE
T ss_pred cCCceEEEEECCCCceeee
Confidence 566899999988775543
No 130
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=66.55 E-value=93 Score=30.99 Aligned_cols=107 Identities=14% Similarity=0.201 Sum_probs=64.7
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eC--CeEEEEEECCCeEEEEEEccCCCCCCCCCC
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CK--GALNYASRNQSTLLIWQLDDHRHHSNSHGS 279 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~--G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~ 279 (368)
+|.....+. ++.|..+|+.+++......+.... .. -..+.. .+ |.+.+.+..+..+.||.+.. +
T Consensus 20 dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~-~~--V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~--~------- 87 (753)
T 3jro_A 20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-GP--VWRVDWAHPKFGTILASCSYDGKVLIWKEEN--G------- 87 (753)
T ss_dssp SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCS-SC--EEEEEECCTTSCSEEEEEETTSCEEEEEEET--T-------
T ss_pred CCCeEEEEECCCcEEEEecCCCCCccceeccCCc-Cc--eEEEEecCCCCCCEEEEEeCCCeEEEEECCC--C-------
Confidence 344333333 678888998877666222333221 11 223333 23 77777777888999999877 4
Q ss_pred ccCCCCCCceEEEEEeeeccccccCccccceEEEEEecC--CCEEEEe-eCCeEEEEECCCC
Q 043460 280 NKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPN--SDIIFLG-SCDMIYRYHLKTN 338 (368)
Q Consensus 280 ~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~-~~~~~~~ydl~t~ 338 (368)
.|.....+.... ..+.-+.+.++ +..++.. .++.+..||++++
T Consensus 88 --------~~~~~~~~~~h~--------~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 88 --------RWSQIAVHAVHS--------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp --------EEEEEEEECCCS--------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred --------cccccccccCCC--------CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 566666554211 22444566766 6666666 5678999999887
No 131
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=66.43 E-value=96 Score=29.89 Aligned_cols=120 Identities=13% Similarity=0.196 Sum_probs=63.6
Q ss_pred cceEEEeCCeEEEEEe-CCeEEEEEc-CCCeEEEEEeCCCCC------CCCCCceeEEeeCCeEEEEEECCCeEEEEEEc
Q 043460 197 LQSVYSRGGILYNLTY-RSTILRYNI-EALSEAEIIEVPDKN------NHPCDSEVIGLCKGALNYASRNQSTLLIWQLD 268 (368)
Q Consensus 197 ~~~v~~~~G~lywl~~-~~~il~fD~-~~~~~~~~~~lP~~~------~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~ 268 (368)
..++.. +|.+|.... ...+.++|. .+++-.....++... ........++..+|+|++...+ . .+..++
T Consensus 56 ~~P~v~-~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-g--~l~alD 131 (571)
T 2ad6_A 56 GAPLVI-GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN-G--HLLALD 131 (571)
T ss_dssp SCCEEE-TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT-S--EEEEEE
T ss_pred cccEEE-CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCC-C--EEEEEE
Confidence 446888 999999987 688999999 675443233333221 0000012234567777665433 2 345555
Q ss_pred cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEECCCCeEE
Q 043460 269 DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYHLKTNKME 341 (368)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~ydl~t~~~~ 341 (368)
-.++ ...|.... ........ ....++ +. ++.||+.. ...+++||.+|.+..
T Consensus 132 ~~tG-------------~~~W~~~~--~~~~~~~~----~~~~P~-v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 132 AKTG-------------KINWEVEV--CDPKVGST----LTQAPF-VA--KDTVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp TTTC-------------CEEEEEEC--CCGGGTCB----CCSCCE-EE--TTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCCC-------------CEEEEecC--CCCCccce----eccCCE-EE--CCEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 4311 11687542 11000000 011222 22 45677652 478999999998865
Q ss_pred E
Q 043460 342 L 342 (368)
Q Consensus 342 ~ 342 (368)
.
T Consensus 190 W 190 (571)
T 2ad6_A 190 W 190 (571)
T ss_dssp E
T ss_pred E
Confidence 4
No 132
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=66.08 E-value=64 Score=27.73 Aligned_cols=111 Identities=8% Similarity=0.020 Sum_probs=61.8
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCe-EEEEEECCCeEEEEEEccCCCCCCCCCCc
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSN 280 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~ 280 (368)
++.+|.... .+.|.++|+.+.+....+.++.... ...+. ..+|+ +++.......+.+|-++. .
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t--~-------- 75 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFG----PGTAMMAPDNRTAYVLNNHYGDIYGIDLDT--C-------- 75 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCS----SCEEEECTTSSEEEEEETTTTEEEEEETTT--T--------
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCC----CceeEECCCCCEEEEEeCCCCcEEEEeCCC--C--------
Confidence 566666655 7889999999987754666664211 11333 34665 444444556777776543 2
Q ss_pred cCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------------CCeEEEEECCCCe
Q 043460 281 KAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------------CDMIYRYHLKTNK 339 (368)
Q Consensus 281 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~~~ydl~t~~ 339 (368)
+- +..+.......... ....-+.+.+++..+++.. ...+..||+++++
T Consensus 76 -------~~--~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 76 -------KN--TFHANLSSVPGEVG--RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp -------EE--EEEEESCCSTTEEE--ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred -------cE--EEEEEccccccccc--ccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 22 22232211100000 0112256777888777763 4789999998844
No 133
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=66.04 E-value=64 Score=27.71 Aligned_cols=196 Identities=7% Similarity=0.007 Sum_probs=95.7
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
..++.|+.... ....++.++| +++...+.... ....++.+|+. +. ++.... ....+.+|+.. ++.+.
T Consensus 54 ~~g~~l~~~d~-~~~~i~~~~~-~g~~~~~~~~~----~~~~gl~~d~d--G~--l~v~~~--~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 54 EAQRTLVWSDL-VGRRVLGWRE-DGTVDVLLDAT----AFTNGNAVDAQ--QR--LVHCEH--GRRAITRSDAD-GQAHL 120 (305)
T ss_dssp GGGTEEEEEET-TTTEEEEEET-TSCEEEEEESC----SCEEEEEECTT--SC--EEEEET--TTTEEEEECTT-SCEEE
T ss_pred CCCCEEEEEEC-CCCEEEEEeC-CCCEEEEeCCC----CccceeeECCC--CC--EEEEEC--CCCEEEEECCC-CCEEE
Confidence 33333444443 4567888898 66654443221 12346777772 22 332221 23567778775 66554
Q ss_pred ccccCCCCCceeeeccceEEE-eCCeEEEEE------------------eCCeEEEEEcCCCeEEEEEeCCCCCCCCCCc
Q 043460 182 RKVSVKPRRPVSFYVLQSVYS-RGGILYNLT------------------YRSTILRYNIEALSEAEIIEVPDKNNHPCDS 242 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~------------------~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~ 242 (368)
...... . .....-+.+.+ .+|.+|+.. ....|..+|+.++++. .+. ... . .
T Consensus 121 ~~~~~~-~--~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~-~~~-~~~--~---p 190 (305)
T 3dr2_A 121 LVGRYA-G--KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ-RMA-DLD--H---P 190 (305)
T ss_dssp EECEET-T--EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-EEE-EES--S---E
T ss_pred EEeccC-C--CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE-EEe-cCC--C---C
Confidence 432111 1 01111112222 278877741 0257999999888877 443 111 1 1
Q ss_pred eeEEe-eCCe-EEEEEECC-----CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEE
Q 043460 243 EVIGL-CKGA-LNYASRNQ-----STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNI 315 (368)
Q Consensus 243 ~~l~~-~~G~-L~~~~~~~-----~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~ 315 (368)
-.++. .+|+ |++..... ..+.+|.++. + .......+. . .... ...-+.+
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~--~---------------~l~~~~~~~-~-~~~~-----~pdgi~~ 246 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD--G---------------ALHDRRHFA-S-VPDG-----LPDGFCV 246 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEET--T---------------EEEEEEEEE-C-CSSS-----CCCSEEE
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC--C---------------CccCCeEEE-E-CCCC-----CCCeEEE
Confidence 12333 3665 65555432 3444444432 2 211111111 1 1111 0111345
Q ss_pred ecCCCEEEEeeCCeEEEEECCCCeEEEecc
Q 043460 316 HPNSDIIFLGSCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 316 ~~~~~~v~~~~~~~~~~ydl~t~~~~~v~~ 345 (368)
..+|+ |++.....|.+||++.+.+..+..
T Consensus 247 d~~G~-lwv~~~~gv~~~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 247 DRGGW-LWSSSGTGVCVFDSDGQLLGHIPT 275 (305)
T ss_dssp CTTSC-EEECCSSEEEEECTTSCEEEEEEC
T ss_pred CCCCC-EEEecCCcEEEECCCCCEEEEEEC
Confidence 66666 666666679999998888777765
No 134
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=65.97 E-value=61 Score=27.50 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=65.9
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCe--EEEEEeCCCCCCCCCCceeEEee---CCeEEEEEECCCeEEEEEEccCCCCCCCC
Q 043460 204 GGILYNLTY-RSTILRYNIEALS--EAEIIEVPDKNNHPCDSEVIGLC---KGALNYASRNQSTLLIWQLDDHRHHSNSH 277 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~--~~~~~~lP~~~~~~~~~~~l~~~---~G~L~~~~~~~~~~~IW~l~~~~~~~~~~ 277 (368)
+|.+...+. ++.|..+|+.++. +.....+.... .. -..+... +|.+.+....+..+.||.++....
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~--v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~----- 93 (351)
T 3f3f_A 22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-SS--IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE----- 93 (351)
T ss_dssp SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS-SC--EEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC-----
T ss_pred CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC-Cc--EEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc-----
Confidence 454444444 6778889988652 22011121111 11 2233333 477877778888999999987522
Q ss_pred CCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecC--CCEEEEe-eCCeEEEEECCCCe
Q 043460 278 GSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPN--SDIIFLG-SCDMIYRYHLKTNK 339 (368)
Q Consensus 278 ~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~-~~~~~~~ydl~t~~ 339 (368)
......|.....+.... ..+.-+.+.++ +..++.. .+..+..||+++.+
T Consensus 94 -----~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 94 -----ECSGRRWNKLCTLNDSK--------GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp -----TTSSCSEEEEEEECCCS--------SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred -----cccccCcceeeeecccC--------CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 01122677766665211 22444566766 7766665 56789999988765
No 135
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=65.79 E-value=81 Score=31.09 Aligned_cols=120 Identities=10% Similarity=0.130 Sum_probs=62.7
Q ss_pred cceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCC------CCCCceeEEeeCCeEEEEEECCCeEEEEEEccC
Q 043460 197 LQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNN------HPCDSEVIGLCKGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 197 ~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~------~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
..++.. +|.+|.....+.+.++|..+++-......+.... .......++..+|+|++...+ . .|..++-.
T Consensus 60 ~~P~v~-~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-g--~l~alD~~ 135 (668)
T 1kv9_A 60 ATPLFH-DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD-G--RLIALDAK 135 (668)
T ss_dssp CCCEEE-TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT-S--EEEEEETT
T ss_pred cCCEEE-CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCC-C--EEEEEECC
Confidence 346788 9999999878899999998765442333322110 000012234456776655433 2 34445532
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEECCCCeEEE
Q 043460 271 RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYHLKTNKMEL 342 (368)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~ydl~t~~~~~ 342 (368)
++ ...|+....-...... ....++ +. ++.||+.. ...+++||.+|.+...
T Consensus 136 tG-------------~~~W~~~~~~~~~~~~------~~~~P~-v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 192 (668)
T 1kv9_A 136 TG-------------KAIWSQQTTDPAKPYS------ITGAPR-VV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAW 192 (668)
T ss_dssp TC-------------CEEEEEECSCTTSSCB------CCSCCE-EE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CC-------------CEeeeeccCCCCCcce------ecCCCE-EE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence 11 1167764310000000 011222 12 45666652 3689999999988543
No 136
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=65.74 E-value=39 Score=29.13 Aligned_cols=56 Identities=5% Similarity=-0.056 Sum_probs=33.3
Q ss_pred CC-eEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCeEEEEEECCCeEEEEE
Q 043460 204 GG-ILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGALNYASRNQSTLLIWQ 266 (368)
Q Consensus 204 ~G-~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~IW~ 266 (368)
+| .|||... .+.|..+|.. ++.+ .+..|... ...+. ..+|+|++.......+.+|.
T Consensus 55 ~g~~l~~~d~~~~~i~~~~~~-g~~~-~~~~~~~~-----~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 55 AQRTLVWSDLVGRRVLGWRED-GTVD-VLLDATAF-----TNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp GGTEEEEEETTTTEEEEEETT-SCEE-EEEESCSC-----EEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCEEEEEECCCCEEEEEeCC-CCEE-EEeCCCCc-----cceeeECCCCCEEEEECCCCEEEEEC
Confidence 45 4899876 6789999994 5566 55544322 11233 34788776655545555543
No 137
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=65.74 E-value=67 Score=27.84 Aligned_cols=29 Identities=3% Similarity=-0.016 Sum_probs=21.9
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCC
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVP 233 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP 233 (368)
+|.++|... .+.|..||+.+.++. .+..+
T Consensus 29 ~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~ 58 (322)
T 2fp8_A 29 TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYA 58 (322)
T ss_dssp TCSSEEEECTTSEEEEECCTTTCEE-EEEES
T ss_pred CCCEEEEEcCCCeEEEECCCCCceE-EEecc
Confidence 577777765 678999999988887 55443
No 138
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=65.20 E-value=1e+02 Score=29.80 Aligned_cols=123 Identities=10% Similarity=0.101 Sum_probs=63.2
Q ss_pred cceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCC--CC--CceeEEeeCCeEEEEEECCCeEEEEEEccCCC
Q 043460 197 LQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNH--PC--DSEVIGLCKGALNYASRNQSTLLIWQLDDHRH 272 (368)
Q Consensus 197 ~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~--~~--~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~ 272 (368)
..++.. +|.+|.......+.++|..+++-.....++..... .+ ....++..+|+|++...+. .+..|+-.++
T Consensus 62 ~~P~v~-~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg---~l~AlD~~TG 137 (582)
T 1flg_A 62 SQAIVS-DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDA---SVVALNKNTG 137 (582)
T ss_dssp CCCEEE-TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTT---EEEEEESSSC
T ss_pred eccEEE-CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCC---EEEEEECCCC
Confidence 346888 99999988646699999987644322333322110 00 0122345677776654332 3455554311
Q ss_pred CCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEec--CCC-EEEEee-------CCeEEEEECCCCeEEE
Q 043460 273 HSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHP--NSD-IIFLGS-------CDMIYRYHLKTNKMEL 342 (368)
Q Consensus 273 ~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~~~~-------~~~~~~ydl~t~~~~~ 342 (368)
...|.....-....+. ....|+.... ++. .||+.. ...+++||.+|.+...
T Consensus 138 -------------~~~W~~~~~~~~~~~~------~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 138 -------------KVVWKKKFADHGAGYT------MTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp -------------CEEEEEECSCGGGTCB------CCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEE
T ss_pred -------------CEEeeecCCCCCcCcc------cccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEe
Confidence 1167754211000000 0112222221 122 666652 5689999999988554
No 139
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=65.05 E-value=71 Score=27.88 Aligned_cols=132 Identities=10% Similarity=0.007 Sum_probs=66.6
Q ss_pred CeeEEEEcccCccceec-CCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCC---CCc-eeccccCCCC
Q 043460 115 KHRYYVCNPLTKQCVAI-PKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSEN---KTW-ITRKVSVKPR 189 (368)
Q Consensus 115 ~~~~~v~NP~T~~~~~l-P~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~---~~W-~~~~~~~~~~ 189 (368)
...+...++.+++...+ |. .....++.+|+. . -+|+.... ....+.+++..+ ++- +... ..
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~-----~~~p~g~~~d~~-~--~~ly~~D~--~~~~I~~~~~~g~~~~~~~~~~~---~~- 74 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPN-----LRNVVALDTEVA-S--NRIYWSDL--SQRMICSTQLDRAHGVSSYDTVI---SR- 74 (316)
T ss_dssp BSSEEEEETTSCCCEEEECS-----CSSEEEEEEETT-T--TEEEEEET--TTTEEEEEEC--------CEEEE---CS-
T ss_pred CCeEEEEECCCcceEehhcC-----CCceEEEEEEeC-C--CEEEEEEC--CCCcEEEEECCCCCCCcccEEEE---eC-
Confidence 34566677777665543 32 223467888873 2 23444332 345677777765 121 1111 10
Q ss_pred CceeeeccceEEE--eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe--eCCeEEEEEECCCeEEE
Q 043460 190 RPVSFYVLQSVYS--RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL--CKGALNYASRNQSTLLI 264 (368)
Q Consensus 190 ~p~~~~~~~~v~~--~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~--~~G~L~~~~~~~~~~~I 264 (368)
....-.++.+ .+|.|||... ...|.++|+........+.. .... ...++. .+|.|++..... .-.|
T Consensus 75 ---~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~--~~~~---P~~iavdp~~g~ly~~d~~~-~~~I 145 (316)
T 1ijq_A 75 ---DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSK---PRAIVVDPVHGFMYWTDWGT-PAKI 145 (316)
T ss_dssp ---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--TTCC---EEEEEEETTTTEEEEEECSS-SCEE
T ss_pred ---CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC--CCCC---cceEEeCCCCCEEEEEccCC-CCeE
Confidence 0111123333 1789999875 67899999987655513321 1111 223444 367788776542 2345
Q ss_pred EEEcc
Q 043460 265 WQLDD 269 (368)
Q Consensus 265 W~l~~ 269 (368)
++.+-
T Consensus 146 ~~~~~ 150 (316)
T 1ijq_A 146 KKGGL 150 (316)
T ss_dssp EEEET
T ss_pred EEEcC
Confidence 55554
No 140
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=64.88 E-value=70 Score=27.77 Aligned_cols=158 Identities=11% Similarity=0.069 Sum_probs=87.0
Q ss_pred CCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEE-eCCeEEEEEe-CCeEEEE
Q 043460 142 PPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-RSTILRY 219 (368)
Q Consensus 142 ~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-~~~il~f 219 (368)
...+.+.|. +.+ +++.. ....+.+|+..++.|+..........+. .++.+ .+|.....+. ++.|..+
T Consensus 11 i~~~~~s~~--~~~--l~~~~--~d~~v~i~~~~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 11 ISCHAWNKD--RTQ--IAICP--NNHEVHIYEKSGNKWVQVHELKEHNGQV-----TGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp CCEEEECTT--SSE--EEEEC--SSSEEEEEEEETTEEEEEEEEECCSSCE-----EEEEEETTTTEEEEEETTSCEEEE
T ss_pred eEEEEECCC--CCE--EEEEe--CCCEEEEEeCCCCcEEeeeeecCCCCcc-----cEEEEeCCCCEEEEEcCCCeEEEE
Confidence 345666662 232 22222 2567889998888765554221110000 11222 1454444444 6789999
Q ss_pred EcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeec
Q 043460 220 NIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMD 298 (368)
Q Consensus 220 D~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~ 298 (368)
|+.+.++.....+...... ...+.. .+|...++...+..+.+|.++... .|.....+...
T Consensus 80 d~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~----------------~~~~~~~~~~~ 140 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRA---ARCVRWAPNEKKFAVGSGSRVISICYFEQEN----------------DWWVCKHIKKP 140 (372)
T ss_dssp EEETTEEEEEEECCCCSSC---EEEEEECTTSSEEEEEETTSSEEEEEEETTT----------------TEEEEEEECTT
T ss_pred ECCCCeeeeeEEeecCCCc---eeEEEECCCCCEEEEEeCCCEEEEEEecCCC----------------cceeeeeeecc
Confidence 9998886633333322111 123333 367777777778899999998753 35444433211
Q ss_pred cccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECC
Q 043460 299 EWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLK 336 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~ 336 (368)
. . ..+.-+.+.+++..++.. .+..+..||++
T Consensus 141 ~-~------~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (372)
T 1k8k_C 141 I-R------STVLSLDWHPNSVLLAAGSCDFKCRIFSAY 172 (372)
T ss_dssp C-C------SCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred c-C------CCeeEEEEcCCCCEEEEEcCCCCEEEEEcc
Confidence 1 1 234456677777766665 56788999954
No 141
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=64.72 E-value=51 Score=32.64 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=63.7
Q ss_pred cceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCC------CCCCceeEEeeCCeEEEEEECCCeEEEEEEccC
Q 043460 197 LQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNN------HPCDSEVIGLCKGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 197 ~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~------~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
..++.. +|.||.....+.+.++|..+++-......+.... .......++..+|+|++...+ .+ +..|+-.
T Consensus 71 ~~P~v~-~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~d-g~--l~alD~~ 146 (677)
T 1kb0_A 71 ATPVVV-DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD-GR--LIALDAA 146 (677)
T ss_dssp CCCEEE-TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT-SE--EEEEETT
T ss_pred eCCEEE-CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCC-CE--EEEEECC
Confidence 346788 9999998877899999998876542333332110 000112334566776665433 23 4444432
Q ss_pred --CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEECCCCeEE
Q 043460 271 --RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYHLKTNKME 341 (368)
Q Consensus 271 --~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~ydl~t~~~~ 341 (368)
+. .|+.....+..... . ....++ +. ++.||+.. ...+++||.+|.+..
T Consensus 147 tG~~---------------~W~~~~~~~~~~~~-~----~~~~p~-v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 147 TGKE---------------VWHQNTFEGQKGSL-T----ITGAPR-VF--KGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp TCCE---------------EEEEETTTTCCSSC-B----CCSCCE-EE--TTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred CCCE---------------EeeecCCcCcCcCc-c----cccCcE-EE--CCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 22 67753210100000 0 011222 22 46677752 478999999998865
Q ss_pred E
Q 043460 342 L 342 (368)
Q Consensus 342 ~ 342 (368)
.
T Consensus 204 W 204 (677)
T 1kb0_A 204 W 204 (677)
T ss_dssp E
T ss_pred E
Confidence 3
No 142
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=64.50 E-value=66 Score=27.31 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred CCeEEEE--------EeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-C-CeEEEEEECCCeEEEEEEccCCCC
Q 043460 204 GGILYNL--------TYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-K-GALNYASRNQSTLLIWQLDDHRHH 273 (368)
Q Consensus 204 ~G~lywl--------~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~-G~L~~~~~~~~~~~IW~l~~~~~~ 273 (368)
+|.+|+. ...+.|..||+.+.++. .+..|...........+... + |.|++..... .|++++.. +
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~---~l~~~d~~-g- 101 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVADMRL---GLLVVQTD-G- 101 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEETTT---EEEEEETT-S-
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEEEEECCC---CEEEEeCC-C-
Q ss_pred CCCCCCccCCCCCCceEEE-EEeeeccccccCccccceEEEEEecCCCEEEEeeCC----------------eEEEEECC
Q 043460 274 SNSHGSNKAASGARSWILK-HSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCD----------------MIYRYHLK 336 (368)
Q Consensus 274 ~~~~~~~~~~~~~~~W~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------------~~~~ydl~ 336 (368)
+.... .......-. ....-+++.+++.+.+..... .++.||.+
T Consensus 102 --------------~~~~~~~~~~~~~~~------~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (314)
T 1pjx_A 102 --------------TFEEIAKKDSEGRRM------QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD 161 (314)
T ss_dssp --------------CEEECCSBCTTSCBC------BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred --------------CEEEEEeccCCCccc------cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC
Q ss_pred CCeEEEe
Q 043460 337 TNKMELF 343 (368)
Q Consensus 337 t~~~~~v 343 (368)
++.+.+
T Consensus 162 -g~~~~~ 167 (314)
T 1pjx_A 162 -GQMIQV 167 (314)
T ss_dssp -SCEEEE
T ss_pred -CCEEEe
No 143
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=63.66 E-value=1.1e+02 Score=29.55 Aligned_cols=108 Identities=6% Similarity=-0.113 Sum_probs=65.1
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccC
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKA 282 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~ 282 (368)
++.+|.... .+.|.++|..+.+....++..... ......-+|+..++...+..+.+|-+...
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p-----~~v~~SpDGr~lyv~~~dg~V~viD~~~~------------ 228 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-----HISRLSASGRYLFVIGRDGKVNMIDLWMK------------ 228 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCE-----EEEEECTTSCEEEEEETTSEEEEEETTSS------------
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCc-----cceEECCCCCEEEEEcCCCeEEEEECCCC------------
Confidence 344555444 689999999998765456554321 11223347776555555556777666421
Q ss_pred CCCCCceEEEEEeeeccccccCccccceEEEEEe----cCCCEEEEe--eCCeEEEEECCCCeEEE
Q 043460 283 ASGARSWILKHSICMDEWGNKLHVFGLTRFYNIH----PNSDIIFLG--SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~--~~~~~~~ydl~t~~~~~ 342 (368)
.-..+.+|+... ..+-+++. ++|..+|+. ....+.++|..|.+..+
T Consensus 229 -----t~~~v~~i~~G~---------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~ 280 (567)
T 1qks_A 229 -----EPTTVAEIKIGS---------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 280 (567)
T ss_dssp -----SCCEEEEEECCS---------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred -----CCcEeEEEecCC---------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE
Confidence 123345555321 12345677 488888887 66789999999988644
No 144
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=62.96 E-value=48 Score=33.00 Aligned_cols=107 Identities=12% Similarity=0.108 Sum_probs=55.6
Q ss_pred CCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe--eCCeEEEEEECCCeEEEEEEccCCCCCCCCCC
Q 043460 204 GGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL--CKGALNYASRNQSTLLIWQLDDHRHHSNSHGS 279 (368)
Q Consensus 204 ~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~--~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~ 279 (368)
+|.|||... ...|.++++...... ++-. ..... ...|+. .+++||++.....+ |++++-.+.
T Consensus 507 ~g~ly~td~~~~~~I~~~~~dG~~~~-~l~~-~~l~~---PnGlavd~~~~~LY~aD~~~~~--I~~~d~dG~------- 572 (699)
T 1n7d_A 507 HGFMYWTDWGTPAKIKKGGLNGVDIY-SLVT-ENIQW---PNGITLDLLSGRLYWVDSKLHS--ISSIDVNGG------- 572 (699)
T ss_dssp SSCCEECCCSSSCCEEBCCSSSCCCC-EESC-SSCSS---CCCEEECTTTCCEEEEETTTTE--EEEECSSSS-------
T ss_pred CCcEEEcccCCCCeEEEEeCCCCCee-EEEe-CCCCC---ccEEEEeccCCEEEEEecCCCe--EEEEccCCC-------
Confidence 688999764 268888888765444 3211 11111 113443 35788888765444 455544322
Q ss_pred ccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEE
Q 043460 280 NKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 280 ~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~ 342 (368)
.-..+.... ..+. .+.++...++-||+. ....|.++|..+++..+
T Consensus 573 --------~~~~~~~~~-~~~~---------~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 573 --------NRKTILEDE-KRLA---------HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp --------CCEEECCCS-SSCS---------SCCCCEEETTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred --------ceEEEEecC-CcCC---------CceEeEEECCEEEEEeCCCCeEEEEEccCCCceE
Confidence 111111110 1111 122322234567776 56789999998877544
No 145
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=62.30 E-value=91 Score=28.18 Aligned_cols=195 Identities=11% Similarity=0.096 Sum_probs=101.6
Q ss_pred ecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 101 DCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 101 ~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
+..+|.|...+. ....++.+++.++....+-... .....++++|+. .+ +|+.... ....+++++.+...-+
T Consensus 124 d~~~~~ly~~D~-~~~~I~r~~~~g~~~~~~~~~~---~~~p~glavd~~-~g--~lY~~d~--~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 124 HHRRELVFWSDV-TLDRILRANLNGSNVEEVVSTG---LESPGGLAVDWV-HD--KLYWTDS--GTSRIEVANLDGAHRK 194 (386)
T ss_dssp ETTTTEEEEEET-TTTEEEEEETTSCCEEEEECSS---CSCCCCEEEETT-TT--EEEEEET--TTTEEEECBTTSCSCE
T ss_pred ecCCCeEEEEeC-CCCcEEEEecCCCCcEEEEeCC---CCCccEEEEEeC-CC--eEEEEcC--CCCeEEEEeCCCCceE
Confidence 345676766654 4557778888776654432211 123467888873 22 3333322 3456777777654322
Q ss_pred eccccCCCCCceeeeccceEEEe--CCeEEEEEe-C-CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe--eCCeEEE
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSR--GGILYNLTY-R-STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL--CKGALNY 254 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~--~G~lywl~~-~-~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~--~~G~L~~ 254 (368)
.... .. .. .-.++.+. +|.|||... . ..|.++|+...... .+-- ..... .-.|+. .+|+||+
T Consensus 195 ~l~~---~~--l~--~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~-~~~~~---PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 195 VLLW---QS--LE--KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIAD-THLFW---PNGLTIDYAGRRMYW 262 (386)
T ss_dssp EEEC---SS--CS--CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEEC-SSCSC---EEEEEEEGGGTEEEE
T ss_pred Eeec---CC--CC--CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EEEE-CCCCC---eeeEEEeCCCCEEEE
Confidence 2211 00 11 11234441 689999876 3 78999999876554 3321 11111 223444 4788998
Q ss_pred EEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEE
Q 043460 255 ASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYR 332 (368)
Q Consensus 255 ~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ 332 (368)
+..... .|++.+-++.+ .-.. +. ..+. .|.++.-.++-||+. ....|.+
T Consensus 263 aD~~~~--~I~~~d~dG~~--------------~~~~---~~-~~~~---------~P~giav~~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 263 VDAKHH--VIERANLDGSH--------------RKAV---IS-QGLP---------HPFAITVFEDSLYWTDWHTKSINS 313 (386)
T ss_dssp EETTTT--EEEEECTTSCS--------------CEEE---EC-SSCS---------SEEEEEEETTEEEEEETTTTEEEE
T ss_pred EECCCC--EEEEEeCCCCe--------------eEEE---EE-CCCC---------CceEEEEECCEEEEeeCCCCeEEE
Confidence 876544 55666543220 1111 11 1111 233433345667776 5678999
Q ss_pred EEC-CCCeEEEecc
Q 043460 333 YHL-KTNKMELFST 345 (368)
Q Consensus 333 ydl-~t~~~~~v~~ 345 (368)
+|. ..+..+.+..
T Consensus 314 ~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 314 ANKFTGKNQEIIRN 327 (386)
T ss_dssp EETTTCCSCEEEEC
T ss_pred EECCCCcceEEEcc
Confidence 995 4444555544
No 146
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=61.78 E-value=80 Score=27.38 Aligned_cols=190 Identities=13% Similarity=0.062 Sum_probs=101.3
Q ss_pred CcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR 182 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~ 182 (368)
+|-+++... ....+.+||..+++... +...+ .....+.+.|. +.+ ++... ....+.+|+.+++.-...
T Consensus 91 ~~~~l~s~s-~D~~i~lWd~~~~~~~~~~~~~~----~~~~~~~~spd--g~~--l~~g~--~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 91 TLPIAASSS-LDAHIRLWDLENGKQIKSIDAGP----VDAWTLAFSPD--SQY--LATGT--HVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp SSSEEEEEE-TTSEEEEEETTTTEEEEEEECCT----TCCCCEEECTT--SSE--EEEEC--TTSEEEEEETTTCSEEEE
T ss_pred CCCEEEEEe-CCCcEEEEECCCCCEEEEEeCCC----ccEEEEEECCC--CCE--EEEEc--CCCcEEEEEcCCCceeEE
Confidence 444444433 56789999998876543 22211 12345677762 232 22222 355788888887653222
Q ss_pred cccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCC
Q 043460 183 KVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQS 260 (368)
Q Consensus 183 ~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~ 260 (368)
-.... . .. ..-...- +|.....+. ++.|..+|+.+.+....+...... ...+.. .+|.+.+....+.
T Consensus 160 ~~~~~-~-~v---~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 160 LDTRG-K-FI---LSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP-----IRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp EECSS-S-CE---EEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-----CCEEEECTTSCEEEEECTTS
T ss_pred ecCCC-c-eE---EEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc-----eeEEEEcCCCCEEEEEcCCC
Confidence 11000 0 00 0001112 455444443 778999999988764233221111 113333 3677777777788
Q ss_pred eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCe
Q 043460 261 TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNK 339 (368)
Q Consensus 261 ~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~ 339 (368)
.+.||-+... . ....+.-. . ..+.-+++.+++..++.. .+..+..+|+++++
T Consensus 229 ~i~iwd~~~~-----------------~--~~~~~~~h-----~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 229 YIKIYDVQHA-----------------N--LAGTLSGH-----A---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp CEEEEETTTC-----------------C--EEEEECCC-----S---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred eEEEEECCCc-----------------c--eeEEEcCC-----C---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 9999987652 1 12222211 0 223445677777766655 56679999999887
Q ss_pred EEE
Q 043460 340 MEL 342 (368)
Q Consensus 340 ~~~ 342 (368)
...
T Consensus 282 ~~~ 284 (321)
T 3ow8_A 282 CVH 284 (321)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 147
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=61.27 E-value=85 Score=27.54 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=73.0
Q ss_pred EEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecccc
Q 043460 106 LILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVS 185 (368)
Q Consensus 106 lll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~ 185 (368)
+++... ....+.+||..+++....-..+ .....+.+.+. ..+-+++.... ....+.+|+.+++.-...-..
T Consensus 114 ~l~s~~--~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~--~~~~v~~~d~~~~~~~~~~~~ 184 (408)
T 4a11_B 114 MFTSSS--FDKTLKVWDTNTLQTADVFNFE----ETVYSHHMSPV-STKHCLVAVGT--RGPKVQLCDLKSGSCSHILQG 184 (408)
T ss_dssp CEEEEE--TTSEEEEEETTTTEEEEEEECS----SCEEEEEECSS-CSSCCEEEEEE--SSSSEEEEESSSSCCCEEECC
T ss_pred EEEEEe--CCCeEEEeeCCCCccceeccCC----CceeeeEeecC-CCCCcEEEEEc--CCCeEEEEeCCCcceeeeecC
Confidence 444443 5678899999887765543221 12234445553 22323333333 245688888877643221110
Q ss_pred CCCCCceeeeccceEEEe-CCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCC----------CCCCC--ceeEEee-C
Q 043460 186 VKPRRPVSFYVLQSVYSR-GGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKN----------NHPCD--SEVIGLC-K 249 (368)
Q Consensus 186 ~~~~~p~~~~~~~~v~~~-~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~----------~~~~~--~~~l~~~-~ 249 (368)
.. .+. .++.+. +|. +...+. ++.|..+|+.+..-. ...+.... ..... ...+... +
T Consensus 185 ~~--~~v-----~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 185 HR--QEI-----LAVSWSPRYDYILATASADSRVKLWDVRRASGC-LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CC--SCE-----EEEEECSSCTTEEEEEETTSCEEEEETTCSSCC-SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred CC--CcE-----EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc-cccccccccccceeeccccccccCceeEEEEcCC
Confidence 00 000 122220 333 333333 678999999876533 22221100 00011 1223332 6
Q ss_pred CeEEEEEECCCeEEEEEEccC
Q 043460 250 GALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 250 G~L~~~~~~~~~~~IW~l~~~ 270 (368)
|...++...+..+.+|.+...
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTC
T ss_pred CCEEEEecCCCeEEEEECCCC
Confidence 777777777788999988764
No 148
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=61.06 E-value=90 Score=27.75 Aligned_cols=41 Identities=7% Similarity=0.016 Sum_probs=30.6
Q ss_pred ceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeEEEEECCCC
Q 043460 288 SWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTN 338 (368)
Q Consensus 288 ~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ydl~t~ 338 (368)
....+.+++... . .-+++.+++..+|......+..+|.+|.
T Consensus 295 t~~~v~~i~~~~-p---------~~ia~spdg~~l~v~n~~~v~v~D~~t~ 335 (361)
T 2oiz_A 295 TKQRVARIPGRD-A---------LSMTIDQQRNLMLTLDGGNVNVYDISQP 335 (361)
T ss_dssp TTEEEEEEECTT-C---------CEEEEETTTTEEEEECSSCEEEEECSSS
T ss_pred CCcEEEEEecCC-e---------eEEEECCCCCEEEEeCCCeEEEEECCCC
Confidence 345677777543 2 2367888999888875588999999998
No 149
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=60.87 E-value=1e+02 Score=29.77 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=25.3
Q ss_pred eEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCC
Q 043460 199 SVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVP 233 (368)
Q Consensus 199 ~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP 233 (368)
.++. +|.+|....++.+.++|..+++-....+++
T Consensus 111 ~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~~~~~ 144 (571)
T 2ad6_A 111 LAYG-AGQIVKKQANGHLLALDAKTGKINWEVEVC 144 (571)
T ss_dssp CEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred cEEE-CCEEEEEeCCCEEEEEECCCCCEEEEecCC
Confidence 4667 999999877889999999887554234444
No 150
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=60.83 E-value=81 Score=27.15 Aligned_cols=117 Identities=8% Similarity=0.011 Sum_probs=63.5
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCeEEEEEECC-----CeEEEEEEccCCCCCCC
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGALNYASRNQ-----STLLIWQLDDHRHHSNS 276 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~~~~~~-----~~~~IW~l~~~~~~~~~ 276 (368)
+|.....+. ++.|..+|+.+.+....+..+.. ...+. ..+|...++...+ ..+.+|.+......
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~--- 155 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP------VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT--- 155 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECSSC------EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT---
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC------eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc---
Confidence 344333333 77899999998776534442211 11233 3367766666655 78999999876320
Q ss_pred CCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCC-CeE
Q 043460 277 HGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKT-NKM 340 (368)
Q Consensus 277 ~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t-~~~ 340 (368)
..+.....-....+.... ....+.-+.+.+++..++.. .+..+..||+++ .+.
T Consensus 156 ----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 210 (369)
T 3zwl_B 156 ----------HELTKVSEEPIHKIITHE-GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY 210 (369)
T ss_dssp ----------CCEEEECSSCSEEEECCT-TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE
T ss_pred ----------eeecccccceeeeccCCc-CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe
Confidence 022222111111111110 00134556677777777665 567899999998 443
No 151
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=60.73 E-value=1.3e+02 Score=29.61 Aligned_cols=180 Identities=13% Similarity=0.067 Sum_probs=91.5
Q ss_pred CCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 114 SKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
....+.|||..+++... +.... .....+.+.|. +.+ +.... ....+.+|+..++.....-..... +.
T Consensus 33 ~~g~v~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~--~~~--l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~--~v 100 (814)
T 3mkq_A 33 YSGRVEIWNYETQVEVRSIQVTE----TPVRAGKFIAR--KNW--IIVGS--DDFRIRVFNYNTGEKVVDFEAHPD--YI 100 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCS----SCEEEEEEEGG--GTE--EEEEE--TTSEEEEEETTTCCEEEEEECCSS--CE
T ss_pred CCCEEEEEECCCCceEEEEecCC----CcEEEEEEeCC--CCE--EEEEe--CCCeEEEEECCCCcEEEEEecCCC--CE
Confidence 45678899988876543 22111 12345666662 232 22222 356789999988875433211110 01
Q ss_pred eeeccceEEE-eCCeEEEEEe-CCeEEEEEcCCC-eEEEEEeCCCCCCCCCCceeEEee--CCeEEEEEECCCeEEEEEE
Q 043460 193 SFYVLQSVYS-RGGILYNLTY-RSTILRYNIEAL-SEAEIIEVPDKNNHPCDSEVIGLC--KGALNYASRNQSTLLIWQL 267 (368)
Q Consensus 193 ~~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~-~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~~~~~~~~~IW~l 267 (368)
. ++.+ .+|.....+. ++.|..+|+.+. .....+.... .. ...+... +|.+.+....+..+.+|.+
T Consensus 101 ~-----~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---~~--v~~~~~~p~~~~~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 101 R-----SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE---HF--VMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (814)
T ss_dssp E-----EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS---SC--EEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred E-----EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC---Cc--EEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 0 1111 0443322333 678999999876 3331222111 11 1233333 4667777777889999988
Q ss_pred ccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEec--CCCEEEEe-eCCeEEEEECCCCeEE
Q 043460 268 DDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHP--NSDIIFLG-SCDMIYRYHLKTNKME 341 (368)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~~~~ydl~t~~~~ 341 (368)
..... ...... .. . .....+.+.+ ++..++.. .++.+..||+++++..
T Consensus 171 ~~~~~---------------~~~~~~----~~-~------~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 221 (814)
T 3mkq_A 171 GQSTP---------------NFTLTT----GQ-E------RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221 (814)
T ss_dssp TCSSC---------------SEEEEC----CC-T------TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE
T ss_pred CCCcc---------------eeEEec----CC-C------CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence 66422 222211 00 0 1123344454 55555554 4567778887777643
No 152
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=60.55 E-value=4.6 Score=36.81 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=20.5
Q ss_pred eEEEeCCeEEEEEeCCeEEEEEcCCCeEE
Q 043460 199 SVYSRGGILYNLTYRSTILRYNIEALSEA 227 (368)
Q Consensus 199 ~v~~~~G~lywl~~~~~il~fD~~~~~~~ 227 (368)
++.. +|.+|.-..++.+.++|..+++..
T Consensus 5 P~v~-~~~v~~gs~dg~v~a~d~~tG~~~ 32 (369)
T 2hz6_A 5 VTLP-ETLLFVSTLDGSLHAVSKRTGSIK 32 (369)
T ss_dssp ---C-TTEEEEEETTSEEEEEETTTCCEE
T ss_pred Ceee-CCEEEEEcCCCEEEEEECCCCCEE
Confidence 4556 889998887889999998876544
No 153
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=60.16 E-value=1.1e+02 Score=28.32 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=34.6
Q ss_pred ceEEEeC-----CeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCeEEEEEE
Q 043460 198 QSVYSRG-----GILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGALNYASR 257 (368)
Q Consensus 198 ~~v~~~~-----G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~~~~ 257 (368)
.++.+ + |.|||......|.++|+.+.+.. .+..+.. . ...++ ..+|.|++...
T Consensus 142 ~gvav-d~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~~~~--~---P~giavd~dG~lyVad~ 200 (433)
T 4hw6_A 142 WRMMF-DPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTTNIG--Q---CADVNFTLNGDMVVVDD 200 (433)
T ss_dssp CEEEE-CTTTTTCEEEEECBTSCEEEEETTTTEEE-EECCCCS--C---EEEEEECTTCCEEEEEC
T ss_pred ceEEE-ccccCCCEEEEEeCCCCEEEEECCCCEEE-EeecCCC--C---ccEEEECCCCCEEEEcC
Confidence 35777 5 89999875578999999888887 4432111 1 22333 34677777765
No 154
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=59.69 E-value=1.5e+02 Score=29.94 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=35.9
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe--eCCeEEEEEECCCeEEEEEEcc
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL--CKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~--~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
+|.|||... ...|.++|+...... ++-. ..... ...|++ .+|.||+..... .-.|++.+-
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~-~l~~-~~l~~---P~gIaVDp~~g~LYwtD~g~-~~~I~~~~~ 544 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRK-TLFR-ENGSK---PRAIVVDPVHGFMYWTDWGT-PAKIKKGGL 544 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEE-EEEE-CTTCC---EEEEEEETTTTEEEEEECSS-SCEEEEEET
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEE-EEEe-CCCCC---cceEEEecCCCCEEEecCCC-CCeEEEEec
Confidence 579999886 678999999877665 3321 11111 224444 358888877543 124555544
No 155
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=59.17 E-value=75 Score=26.22 Aligned_cols=192 Identities=6% Similarity=0.116 Sum_probs=94.6
Q ss_pred cCCcEEEE-eecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 102 CCNGLILL-GSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 102 s~~Glll~-~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
..+|-|.+ ... ....+.++|+.++....++... .....++.+|+. +. ++.... ...+.+|+..++.-.
T Consensus 32 ~~~g~l~v~~~~-~~~~i~~~~~~~~~~~~~~~~~---~~~p~~i~~~~~--g~--l~v~~~---~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 32 DSAGNVYVTSEG-MYGRVVKLATGSTGTTVLPFNG---LYQPQGLAVDGA--GT--VYVTDF---NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CTTCCEEEEECS-SSCEEEEECC-----EECCCCS---CCSCCCEEECTT--CC--EEEEET---TTEEEEECTTCSCCE
T ss_pred CCCCCEEEEccC-CCCcEEEecCCCcccceEeeCC---cCCcceeEECCC--CC--EEEEcC---CCEEEEEeCCCceEe
Confidence 34555555 432 4567888999887766654322 223457788872 33 333221 346778887765433
Q ss_pred eccccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEE
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASR 257 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~ 257 (368)
.... .. .. .-.++.+. +|.+|+... ...|..+|..+.... ..... .... ...++. .+|+|++...
T Consensus 101 ~~~~--~~---~~--~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~-~~~~---p~~i~~~~~g~l~v~~~ 168 (270)
T 1rwi_B 101 VLPF--DG---LN--YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPFT-GLND---PDGVAVDNSGNVYVTDT 168 (270)
T ss_dssp ECCC--CS---CS--SEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-ECCCC-SCCS---CCCEEECTTCCEEEEEG
T ss_pred eeec--CC---cC--CCcceEECCCCCEEEEECCCCEEEEEECCCceeE-eeccc-cCCC---ceeEEEeCCCCEEEEEC
Confidence 3221 00 01 11123331 678777654 578999987766544 32111 1111 123333 3688877766
Q ss_pred CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEEC
Q 043460 258 NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHL 335 (368)
Q Consensus 258 ~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl 335 (368)
....+.+|..+. . .-.. .....+ ....-+++.+++ -+|+. ....+.+||+
T Consensus 169 ~~~~i~~~~~~~--~---------------~~~~---~~~~~~-------~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 169 DNNRVVKLEAES--N---------------NQVV---LPFTDI-------TAPWGIAVDEAG-TVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp GGTEEEEECTTT--C---------------CEEE---CCCSSC-------CSEEEEEECTTC-CEEEEETTTSCEEEECT
T ss_pred CCCEEEEEecCC--C---------------ceEe---ecccCC-------CCceEEEECCCC-CEEEEECCCCcEEEEcC
Confidence 555665554332 2 1100 111111 112334555555 45555 3568999999
Q ss_pred CCCeEEEec
Q 043460 336 KTNKMELFS 344 (368)
Q Consensus 336 ~t~~~~~v~ 344 (368)
++++...+.
T Consensus 221 ~~~~~~~~~ 229 (270)
T 1rwi_B 221 GSTTSTVLP 229 (270)
T ss_dssp TCSCCEECC
T ss_pred CCCcceeec
Confidence 887665543
No 156
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=59.15 E-value=97 Score=27.51 Aligned_cols=142 Identities=12% Similarity=0.038 Sum_probs=74.8
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK 183 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~ 183 (368)
.+.|++. ....+...++.+.+...+-.. .....++.+|+. .-+|+.... ....+..++..++.-+...
T Consensus 44 ~~~ll~~---~~~~I~~i~~~g~~~~~~~~~----~~~~~~l~~d~~---~~~ly~~D~--~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 44 EPVLLFA---NRIDIRQVLPHRSEYTLLLNN----LENAIALDFHHR---RELVFWSDV--TLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp CCEEEEE---CBSCEEEECTTSCCEEEEECS----CSCEEEEEEETT---TTEEEEEET--TTTEEEEEETTSCSCEEEE
T ss_pred CceeEee---cccceEEEeCCCCeeEEeecC----CCceEEEEEecc---ccEEEEEec--cCCceEEEecCCCCceEEE
Confidence 4555555 334566667666555443221 123567888873 224444332 3456777787766544332
Q ss_pred ccCCCCCceeeeccceEEE--eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEEEEC
Q 043460 184 VSVKPRRPVSFYVLQSVYS--RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYASRN 258 (368)
Q Consensus 184 ~~~~~~~p~~~~~~~~v~~--~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~~~~ 258 (368)
.. ....-.++.+ .+|.|||... ...|.++|+...... .+. ...... ...++.. +|.|++....
T Consensus 112 ~~-------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~-~~~l~~---P~~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 112 ST-------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VLL-WQSLEK---PRAIALHPMEGTIYWTDWG 179 (349)
T ss_dssp CS-------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-CTTCSC---EEEEEEETTTTEEEEEECS
T ss_pred eC-------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EEE-eCCCCC---cceEEEecCcCeEEEeccC
Confidence 10 0111123333 1789999876 578999999876544 332 111111 2234443 6788887764
Q ss_pred CCeEEEEEEccC
Q 043460 259 QSTLLIWQLDDH 270 (368)
Q Consensus 259 ~~~~~IW~l~~~ 270 (368)
. .-.|++.+.+
T Consensus 180 ~-~~~I~r~~~d 190 (349)
T 3v64_C 180 N-TPRIEASSMD 190 (349)
T ss_dssp S-SCEEEEEETT
T ss_pred C-CCEEEEEeCC
Confidence 4 2345555543
No 157
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=59.07 E-value=1e+02 Score=27.72 Aligned_cols=113 Identities=9% Similarity=0.074 Sum_probs=63.9
Q ss_pred CCeEEEEEeCCeEEEEEcCCCeEEEEE---eCCCCC---CC-CCCc-eeEE-eeC-CeEEEEEECC-------CeEEEEE
Q 043460 204 GGILYNLTYRSTILRYNIEALSEAEII---EVPDKN---NH-PCDS-EVIG-LCK-GALNYASRNQ-------STLLIWQ 266 (368)
Q Consensus 204 ~G~lywl~~~~~il~fD~~~~~~~~~~---~lP~~~---~~-~~~~-~~l~-~~~-G~L~~~~~~~-------~~~~IW~ 266 (368)
++.+||....+.+.++|..+.... .+ ++.... .. .... ..++ ..+ ++|++..... ..=.||+
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~-v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGAT-NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcce-EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 356677666678888998765433 22 111110 00 0001 1122 223 4555554321 1236888
Q ss_pred EccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCC-EEEEe--eCCeEEEEECCCCeEEEe
Q 043460 267 LDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSD-IIFLG--SCDMIYRYHLKTNKMELF 343 (368)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~~~ydl~t~~~~~v 343 (368)
++- . ..+.+.+|+....+ .-+++.+++. .+|.. ....+..+|.+|.+..+.
T Consensus 303 ID~--~---------------t~~vv~~i~~g~~p---------~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 303 VTG--L---------------VGQTSSQISLGHDV---------DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEC--C---------------CCEEEEEEECCCCc---------CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 876 3 56777777643312 3356788888 77776 367899999999997654
No 158
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=58.76 E-value=90 Score=26.98 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=74.4
Q ss_pred eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC---CceeccccCCCCCce
Q 043460 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK---TWITRKVSVKPRRPV 192 (368)
Q Consensus 116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~---~W~~~~~~~~~~~p~ 192 (368)
..++++||.+++...+... .....++++++. +. .++.... ....+.+|+..+. ..+.... . +. |.
T Consensus 165 g~v~~~d~~~~~~~~~~~~----~~~p~gia~~~d--g~-~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~-~-~g-P~ 232 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKE----LHVPGGAEVSAD--SS-FVLVAEF--LSHQIVKYWLEGPKKGTAEVLVK-I-PN-PG 232 (322)
T ss_dssp EEEEEEETTTTEEEEEEEE----ESCCCEEEECTT--SS-EEEEEEG--GGTEEEEEESSSTTTTCEEEEEE-C-SS-EE
T ss_pred ceEEEEeCCCCEEEEeccC----CccCcceEECCC--CC-EEEEEeC--CCCeEEEEECCCCcCCccceEEe-C-CC-CC
Confidence 5688888888776544211 123346777762 22 2322221 2457888887753 3332221 1 11 22
Q ss_pred eeeccceEEEeCCeEEEEEeC-----------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCe
Q 043460 193 SFYVLQSVYSRGGILYNLTYR-----------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQST 261 (368)
Q Consensus 193 ~~~~~~~v~~~~G~lywl~~~-----------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~ 261 (368)
.. .+-- +|.+|.-... ..|..||+..+... .+..|..... .....+...+|.|++.......
T Consensus 233 gi----~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~-~~~~~~g~~~-~~~~~~~~~~g~L~v~~~~~~~ 305 (322)
T 2fp8_A 233 NI----KRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILE-VIPLPPPFAG-EHFEQIQEHDGLLYIGTLFHGS 305 (322)
T ss_dssp EE----EECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEE-EEECCTTTTT-SCCCEEEEETTEEEEECSSCSE
T ss_pred Ce----EECC-CCCEEEEecCcccccccCCCccEEEEECCCCCEEE-EEECCCCCcc-ccceEEEEeCCEEEEeecCCCc
Confidence 21 2223 5775554433 46999999877777 8888754211 1122445568999988877777
Q ss_pred EEEEEEcc
Q 043460 262 LLIWQLDD 269 (368)
Q Consensus 262 ~~IW~l~~ 269 (368)
+.+..++.
T Consensus 306 i~~~~~~~ 313 (322)
T 2fp8_A 306 VGILVYDK 313 (322)
T ss_dssp EEEEEC--
T ss_pred eEEEeccc
Confidence 77777664
No 159
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=58.60 E-value=88 Score=26.87 Aligned_cols=136 Identities=11% Similarity=0.089 Sum_probs=73.6
Q ss_pred CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEE-eCCeEEEEEeC-----CeEEEEEcCCCeEEEEEeCCCCCCCC
Q 043460 166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYS-RGGILYNLTYR-----STILRYNIEALSEAEIIEVPDKNNHP 239 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~~-----~~il~fD~~~~~~~~~~~lP~~~~~~ 239 (368)
...+.+|+.+++..+...... ...+. ++.+ .+|.+|..... ..|..+|+.+.+....+.-+... ..
T Consensus 65 ~~~i~~~d~~~~~~~~~~~~~-~~~~~------~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~ 136 (333)
T 2dg1_A 65 EGNIFKINPETKEIKRPFVSH-KANPA------AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA-YC 136 (333)
T ss_dssp TCEEEEECTTTCCEEEEEECS-SSSEE------EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC-CC
T ss_pred CCEEEEEeCCCCcEEEEeeCC-CCCcc------eEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC-Cc
Confidence 346788888888766543111 11111 2222 16777666543 48999999988776222211111 11
Q ss_pred CCceeEE-eeCCeEEEEEEC----CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEE
Q 043460 240 CDSEVIG-LCKGALNYASRN----QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYN 314 (368)
Q Consensus 240 ~~~~~l~-~~~G~L~~~~~~----~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~ 314 (368)
...+. ..+|.+++.... .....||.++..++ +..... . ... ...-++
T Consensus 137 --~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~---------------~~~~~~--~--~~~-------~~~~i~ 188 (333)
T 2dg1_A 137 --IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR---------------TVTPII--Q--NIS-------VANGIA 188 (333)
T ss_dssp --EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC---------------CEEEEE--E--EES-------SEEEEE
T ss_pred --ccceEECCCCCEEEEeccccccCCCceEEEEeCCCC---------------EEEEee--c--CCC-------cccceE
Confidence 11233 347888776653 23568888876533 333321 1 011 123345
Q ss_pred EecCCCEEEEe--eCCeEEEEECCC
Q 043460 315 IHPNSDIIFLG--SCDMIYRYHLKT 337 (368)
Q Consensus 315 ~~~~~~~v~~~--~~~~~~~ydl~t 337 (368)
+.++++.+|+. ....++.||+++
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecC
Confidence 67777777776 356899999854
No 160
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=58.25 E-value=86 Score=26.63 Aligned_cols=105 Identities=10% Similarity=0.046 Sum_probs=57.0
Q ss_pred CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceE
Q 043460 213 RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWI 290 (368)
Q Consensus 213 ~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~ 290 (368)
.+.|..+|+.+.+....+.++..... ...+. ..+|+ |++....+..+.+|-+... +
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-----------------~-- 67 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAGPT---PMVPMVAPGGRIAYATVNKSESLVKIDLVTG-----------------E-- 67 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTC---CCCEEECTTSSEEEEEETTTTEEEEEETTTC-----------------C--
T ss_pred CCeEEEEECCCCcEEEEEEcCCCCCC---ccceEEcCCCCEEEEEeCCCCeEEEEECCCC-----------------C--
Confidence 67899999998876546666642100 11233 33664 5555545667777765442 2
Q ss_pred EEEEeeeccccccCccccceEEEEEecCCCEEEEee-------------CCeEEEEECCCCeEEE
Q 043460 291 LKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------------CDMIYRYHLKTNKMEL 342 (368)
Q Consensus 291 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~~~ydl~t~~~~~ 342 (368)
.+..+......... ....-+++.++++.+++.. ...+..||+++.+...
T Consensus 68 ~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 68 TLGRIDLSTPEERV---KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp EEEEEECCBTTEEE---ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred eEeeEEcCCccccc---ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 12223321100000 0112245677777777762 4789999998887644
No 161
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=58.12 E-value=1.1e+02 Score=27.81 Aligned_cols=141 Identities=9% Similarity=0.013 Sum_probs=70.0
Q ss_pred cEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC----ce
Q 043460 105 GLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT----WI 180 (368)
Q Consensus 105 Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~----W~ 180 (368)
.+|++. ....+...+..+++...+-+ ......++.+|+. . -+|+.... ....+..++..... ..
T Consensus 84 ~~ll~~---~~~~I~~i~l~~~~~~~~~~----~~~~~~~l~~d~~-~--~~lywsD~--~~~~I~~~~~~g~~~~~~~~ 151 (400)
T 3p5b_L 84 AYLFFT---NRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVA-S--NRIYWSDL--SQRMICSTQLDRAHGVSSYD 151 (400)
T ss_dssp CEEEEE---ETTEEEEECTTSCSCEEEEC----SCSCEEEEEEETT-T--TEEEEEET--TTTEEEEEEC------CCCE
T ss_pred ceeEEe---ccceeEEEccCCcceeEecc----ccCcceEEeeeec-c--CceEEEec--CCCeEEEEEcccCCCCCcce
Confidence 345554 23466666776665554421 1234567888873 2 24444332 24456666665421 11
Q ss_pred eccccCCCCCceeeeccceEEE--eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe--eCCeEEEE
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYS--RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL--CKGALNYA 255 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~--~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~--~~G~L~~~ 255 (368)
... ... . ..-.++.+ .+|.|||... ...|.++|+........+.. .... ...++. .+|.|++.
T Consensus 152 ~~~---~~~--~--~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~--~~~~---P~~iavdp~~g~ly~t 219 (400)
T 3p5b_L 152 TVI---SRD--I--QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSK---PRAIVVDPVHGFMYWT 219 (400)
T ss_dssp EEE---CSS--C--SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC--SSCC---EEEEEEETTTTEEEEE
T ss_pred EEE---eCC--C--CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC--CCCC---cceEEEecccCeEEEE
Confidence 111 100 1 11123333 1689999976 67899999987766523321 1111 223444 36788877
Q ss_pred EECCCeEEEEEEccC
Q 043460 256 SRNQSTLLIWQLDDH 270 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~ 270 (368)
.... .-.|++.+-+
T Consensus 220 d~~~-~~~I~~~~~d 233 (400)
T 3p5b_L 220 DWGT-PAKIKKGGLN 233 (400)
T ss_dssp ECSS-SCCEEEEETT
T ss_pred eCCC-CCEEEEEeCC
Confidence 6532 1245555543
No 162
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=56.64 E-value=1.2e+02 Score=27.98 Aligned_cols=111 Identities=11% Similarity=0.075 Sum_probs=65.4
Q ss_pred CeEEEEEeCCeEEEEEcCCCeEEEEEeC-CC--CCC-------CCCCceeEEeeCCeEEEEEECC-------CeEEEEEE
Q 043460 205 GILYNLTYRSTILRYNIEALSEAEIIEV-PD--KNN-------HPCDSEVIGLCKGALNYASRNQ-------STLLIWQL 267 (368)
Q Consensus 205 G~lywl~~~~~il~fD~~~~~~~~~~~l-P~--~~~-------~~~~~~~l~~~~G~L~~~~~~~-------~~~~IW~l 267 (368)
+.+|+....+.+.++|..+.+.. ++.. +. ... .......+...+++|++...+. ..=.||++
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~~-v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI 355 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGAT-FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL 355 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCEE-ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCceE-EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence 34555554667888888776554 3321 00 000 0000112212235777766421 23478888
Q ss_pred ccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCC-EEEEee--CCeEEEEECCCCeEEE
Q 043460 268 DDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSD-IIFLGS--CDMIYRYHLKTNKMEL 342 (368)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~--~~~~~~ydl~t~~~~~ 342 (368)
+- . .+..+.+|+....+ .-+.+.+++. .+|... ...+.++|+.|.+..+
T Consensus 356 D~--~---------------T~kvv~~I~vg~~P---------~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 356 NA--E---------------TGERINKIELGHEI---------DSINVSQDAEPLLYALSAGTQTLHIYDAATGEELR 407 (426)
T ss_dssp ET--T---------------TCCEEEEEEEEEEE---------CEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EC--C---------------CCeEEEEEECCCCc---------CeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEE
Confidence 87 3 57778888754322 2256788888 888873 6899999999999764
No 163
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=56.10 E-value=1.2e+02 Score=27.43 Aligned_cols=155 Identities=11% Similarity=0.086 Sum_probs=76.5
Q ss_pred CcEEEEeec-----------CCCeeEEEEcccC--ccceecCCCC---cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCc
Q 043460 104 NGLILLGSS-----------LSKHRYYVCNPLT--KQCVAIPKAR---EDVLASPPALAFHPCDSSHYKIIRFLRARMDP 167 (368)
Q Consensus 104 ~Glll~~~~-----------~~~~~~~v~NP~T--~~~~~lP~~~---~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~ 167 (368)
+|++.+... .....++++||.+ .+.+.|.-.. .......+|+.+.+...+...++.+.......
T Consensus 60 ~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s 139 (355)
T 3sre_A 60 NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSS 139 (355)
T ss_dssp TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCC
T ss_pred CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCC
Confidence 677766641 1466799999984 4444443221 11223556666544223456676666544456
Q ss_pred EEEEEeCCC--CCceeccccCCCCCceeeeccceEEEeCCeEEEEEe------------------CCeEEEEEcCCCeEE
Q 043460 168 EVDIFSSEN--KTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY------------------RSTILRYNIEALSEA 227 (368)
Q Consensus 168 ~~~vyss~~--~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~------------------~~~il~fD~~~~~~~ 227 (368)
.+++|..+. +........ ...+.... ...+...+|.+|.-.. .+.++.+|+. +.+
T Consensus 140 ~ielf~~d~~~~~~~~~~~~--~g~~~~~p-ND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~ 214 (355)
T 3sre_A 140 TVEVFKFQEEEKSLLHLKTI--RHKLLPSV-NDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR 214 (355)
T ss_dssp EEEEEEEETTTTEEEEEEEE--CCTTCSSE-EEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE
T ss_pred eEEEEEEECCCCEEEEEecc--ccCCCCCC-ceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE
Confidence 778876654 333333321 11122212 2233333788765432 2468888885 233
Q ss_pred EEEeCCCCCCCCCCceeEEe-eCC-eEEEEEECCCeEEEEEEcc
Q 043460 228 EIIEVPDKNNHPCDSEVIGL-CKG-ALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 228 ~~~~lP~~~~~~~~~~~l~~-~~G-~L~~~~~~~~~~~IW~l~~ 269 (368)
.+.-..... + -++. .+| .|+++.....++..+.++.
T Consensus 215 -~~~~~l~~p----N-Gia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 215 -VVAEGFDFA----N-GINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp -EEEEEESSE----E-EEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred -EeecCCccc----C-cceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 221000000 1 2333 366 5666666666666666654
No 164
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=55.79 E-value=99 Score=26.57 Aligned_cols=107 Identities=9% Similarity=0.040 Sum_probs=63.2
Q ss_pred CeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEEEECCCeEEEEEEccCCCCCCCCCCcc
Q 043460 205 GILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYASRNQSTLLIWQLDDHRHHSNSHGSNK 281 (368)
Q Consensus 205 G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~ 281 (368)
|.+...+. ++.|..+|+.+.+....+..... . ...+... +|.+.+....+..+.||.+...
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~---~--i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------- 148 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGN---A--INELKFHPRDPNLLLSVSKDHALRLWNIQTD----------- 148 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCEEEEEESCCS---C--EEEEEECSSCTTEEEEEETTSCEEEEETTTT-----------
T ss_pred CCEEEEecCCCEEEEEEchhceEeeeecCCCC---c--EEEEEECCCCCCEEEEEeCCCeEEEEEeecC-----------
Confidence 45555554 77899999988765423332111 1 1223332 6777777778889999988652
Q ss_pred CCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeE
Q 043460 282 AASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKM 340 (368)
Q Consensus 282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~ 340 (368)
+ .+..+. .+.... ..+.-+.+.+++..++.. .+..+..||+++.+.
T Consensus 149 ------~--~~~~~~--~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 195 (366)
T 3k26_A 149 ------T--LVAIFG--GVEGHR---DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 195 (366)
T ss_dssp ------E--EEEEEC--STTSCS---SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHH
T ss_pred ------e--EEEEec--cccccc---CceeEEEECCCCCEEEEecCCCCEEEEECCCCcc
Confidence 1 122221 011110 234456677777777666 567899999998763
No 165
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=55.59 E-value=1.2e+02 Score=27.46 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=19.2
Q ss_pred EEEEEecCCCEEEEeeCCeEEEEECCCCeEEE
Q 043460 311 RFYNIHPNSDIIFLGSCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 311 ~~~~~~~~~~~v~~~~~~~~~~ydl~t~~~~~ 342 (368)
.+.++++++.+|.-..+..+...|+++.+.++
T Consensus 404 s~~~fspdg~~lasg~d~~i~iW~~~~gk~rK 435 (435)
T 4e54_B 404 SLNEFNPMGDTLASAMGYHILIWSQQEARTRK 435 (435)
T ss_dssp CEEEECTTSSCEEEECSSEEEECCCC------
T ss_pred EEEEECCCCCEEEEEcCCcEEEEECCcCeeeC
Confidence 34467788887665567789999999887654
No 166
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=54.63 E-value=1.1e+02 Score=26.61 Aligned_cols=154 Identities=10% Similarity=0.095 Sum_probs=77.7
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK 183 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~ 183 (368)
+|-+++... ....+.+||..+++...+-... .......+.+.|. + ++++... ....+.+|+.+++.-....
T Consensus 138 ~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~--~~~~i~~~~~~pd--g--~~lasg~--~dg~i~iwd~~~~~~~~~~ 208 (343)
T 3lrv_A 138 NTEYFIWAD-NRGTIGFQSYEDDSQYIVHSAK--SDVEYSSGVLHKD--S--LLLALYS--PDGILDVYNLSSPDQASSR 208 (343)
T ss_dssp -CCEEEEEE-TTCCEEEEESSSSCEEEEECCC--SSCCCCEEEECTT--S--CEEEEEC--TTSCEEEEESSCTTSCCEE
T ss_pred CCCEEEEEe-CCCcEEEEECCCCcEEEEEecC--CCCceEEEEECCC--C--CEEEEEc--CCCEEEEEECCCCCCCccE
Confidence 444444332 6678999999988875442221 1112456677762 2 2333332 3567899999887643111
Q ss_pred ccCCCCCceeeeccceEEE-eCCeEEEEEeCCeEEEEEcCCCeEEEEEeC-CCCCCCCCCceeEEe-eCCeEEEEEEC-C
Q 043460 184 VSVKPRRPVSFYVLQSVYS-RGGILYNLTYRSTILRYNIEALSEAEIIEV-PDKNNHPCDSEVIGL-CKGALNYASRN-Q 259 (368)
Q Consensus 184 ~~~~~~~p~~~~~~~~v~~-~~G~lywl~~~~~il~fD~~~~~~~~~~~l-P~~~~~~~~~~~l~~-~~G~L~~~~~~-~ 259 (368)
-......+.. ++.+ .+|.....+.++.|..+|+.+.+-...+.. ....... ....+.. .+|+..++... +
T Consensus 209 ~~~~h~~~v~-----~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~s~~d 282 (343)
T 3lrv_A 209 FPVDEEAKIK-----EVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKT-GTVTYDIDDSGKNMIAYSNES 282 (343)
T ss_dssp CCCCTTSCEE-----EEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC------CCEEEEECTTSSEEEEEETTT
T ss_pred EeccCCCCEE-----EEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccc-cceEEEECCCCCEEEEecCCC
Confidence 0000000111 2222 145444444466899999988643201111 0000000 0112333 36776666665 7
Q ss_pred CeEEEEEEccCCC
Q 043460 260 STLLIWQLDDHRH 272 (368)
Q Consensus 260 ~~~~IW~l~~~~~ 272 (368)
..+.||.++...+
T Consensus 283 ~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 283 NSLTIYKFDKKTK 295 (343)
T ss_dssp TEEEEEEECTTTC
T ss_pred CcEEEEEEccccc
Confidence 8999999988766
No 167
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=52.54 E-value=1.1e+02 Score=26.20 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=46.0
Q ss_pred CeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCC
Q 043460 250 GALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCD 328 (368)
Q Consensus 250 G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~ 328 (368)
|.+.+....+..+.||.++..+. .....+.... ..+.-+.+.+++..++.. .+.
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~-----------------~~~~~~~~h~--------~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQ-----------------TIPKAQQMHT--------GPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSC-----------------EEEEEEEECS--------SCEEEEEECTTSSEEEEEETTS
T ss_pred ceEEEEECCCCcEEEEEcCCCCc-----------------eeEEEecccc--------CCEEEEEECcCCCEEEEEcCCC
Confidence 57777777788999999987322 2222222111 234446677777776665 566
Q ss_pred eEEEEECCCCeEEEecc
Q 043460 329 MIYRYHLKTNKMELFST 345 (368)
Q Consensus 329 ~~~~ydl~t~~~~~v~~ 345 (368)
.+..+|+++++...+..
T Consensus 109 ~v~iwd~~~~~~~~~~~ 125 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIAQ 125 (368)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred cEEEEEcCCCCceeecc
Confidence 79999999988766544
No 168
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=52.51 E-value=1.2e+02 Score=26.41 Aligned_cols=145 Identities=12% Similarity=-0.019 Sum_probs=72.6
Q ss_pred EecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460 100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW 179 (368)
Q Consensus 100 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W 179 (368)
.+..+|.++.... ....++++||.+++...++... ...++.+++. +.+ +... ...+.+|+.+++..
T Consensus 56 ~~~~~~~l~~~d~-~~~~i~~~d~~~~~~~~~~~~~-----~v~~i~~~~d--g~l--~v~~----~~gl~~~d~~~g~~ 121 (326)
T 2ghs_A 56 FDPASGTAWWFNI-LERELHELHLASGRKTVHALPF-----MGSALAKISD--SKQ--LIAS----DDGLFLRDTATGVL 121 (326)
T ss_dssp EETTTTEEEEEEG-GGTEEEEEETTTTEEEEEECSS-----CEEEEEEEET--TEE--EEEE----TTEEEEEETTTCCE
T ss_pred EeCCCCEEEEEEC-CCCEEEEEECCCCcEEEEECCC-----cceEEEEeCC--CeE--EEEE----CCCEEEEECCCCcE
Confidence 3444455555543 4568899999998776553221 2345666662 332 2222 23488889888887
Q ss_pred eeccccCCCCCceeeeccceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCe
Q 043460 180 ITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGA 251 (368)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~ 251 (368)
+..... ....+......-.+.- +|.+|+-.. ...|..+| +++.. .+.- .... ...++.. +|+
T Consensus 122 ~~~~~~-~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~--~~~~---~~~i~~s~dg~ 191 (326)
T 2ghs_A 122 TLHAEL-ESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFA--DISI---PNSICFSPDGT 191 (326)
T ss_dssp EEEECS-STTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEE--EESS---EEEEEECTTSC
T ss_pred EEEeeC-CCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeC--CCcc---cCCeEEcCCCC
Confidence 655321 1110111111112223 677755432 15788998 46665 3311 1001 1133333 664
Q ss_pred -EEEEEECCCeEEEEEEc
Q 043460 252 -LNYASRNQSTLLIWQLD 268 (368)
Q Consensus 252 -L~~~~~~~~~~~IW~l~ 268 (368)
|++.......+.+|.++
T Consensus 192 ~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEEEEETTTCEEEEEEBC
T ss_pred EEEEEECCCCEEEEEEcc
Confidence 66655444555555554
No 169
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.32 E-value=1.3e+02 Score=26.81 Aligned_cols=98 Identities=9% Similarity=0.123 Sum_probs=58.6
Q ss_pred CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEE--CCCeEEEEEEccCCCCCCCCCCccCCCCCCce
Q 043460 213 RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASR--NQSTLLIWQLDDHRHHSNSHGSNKAASGARSW 289 (368)
Q Consensus 213 ~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~--~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W 289 (368)
++.|..+|+.+.+....+..+.. ...+.. .+|...++.. .+..+.||.+.. . ..
T Consensus 283 d~~i~i~d~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~--~---------------~~ 339 (401)
T 4aez_A 283 DKQIHFWNAATGARVNTVDAGSQ------VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS--S---------------GL 339 (401)
T ss_dssp TCEEEEEETTTCCEEEEEECSSC------EEEEEECSSSSEEEEEECTTTCEEEEEEEET--T---------------EE
T ss_pred CCEEEEEECCCCCEEEEEeCCCc------EEEEEECCCCCeEEEEeecCCCcEEEEecCC--c---------------cc
Confidence 67899999988765524433211 123333 3666666643 678999999876 3 45
Q ss_pred EEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEE
Q 043460 290 ILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKME 341 (368)
Q Consensus 290 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~ 341 (368)
.....+.... ..+.-+.+.+++..++.. .++.+..+|+.+++..
T Consensus 340 ~~~~~~~~h~--------~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 340 TKQVDIPAHD--------TRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEEEEECCS--------SCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred eeEEEecCCC--------CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 5554443211 123345677888877766 5678999999987743
No 170
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=51.94 E-value=1.4e+02 Score=27.04 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=72.7
Q ss_pred EEEEeecCCCeeEEEEcccCccc--eec-CCCCc-CCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC-ce
Q 043460 106 LILLGSSLSKHRYYVCNPLTKQC--VAI-PKARE-DVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT-WI 180 (368)
Q Consensus 106 lll~~~~~~~~~~~v~NP~T~~~--~~l-P~~~~-~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~-W~ 180 (368)
+|+... ....+.|||..++.. ..+ |.... ........+.+.|. +...++... ....+.+|+.+++. .+
T Consensus 196 ~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~--~~~~l~s~~---~dg~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 196 YLLSAS--DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL--HESLFGSVA---DDQKLMIWDTRNNNTSK 268 (430)
T ss_dssp EEEEEC--TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS--CTTEEEEEE---TTSEEEEEETTCSCSSS
T ss_pred eEEEEe--CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC--CCCEEEEEe---CCCeEEEEECCCCCCCc
Confidence 554443 567888999877321 111 11111 11223445667762 233333332 35679999998763 11
Q ss_pred eccccCCCCCceeeeccceEEEe-CCe-EEEEEe-CCeEEEEEcCCCe--EEEEEeCCCCCCCCCCceeEEee-CC-eEE
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSR-GGI-LYNLTY-RSTILRYNIEALS--EAEIIEVPDKNNHPCDSEVIGLC-KG-ALN 253 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~-~G~-lywl~~-~~~il~fD~~~~~--~~~~~~lP~~~~~~~~~~~l~~~-~G-~L~ 253 (368)
..........+ -.++.+. +|. ++..+. ++.|..+|+.+.. .. .+.... .. ...+... +| .++
T Consensus 269 ~~~~~~~~~~~-----v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~-~~~~h~---~~--v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 269 PSHTVDAHTAE-----VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH-SFESHK---DE--IFQVQWSPHNETIL 337 (430)
T ss_dssp CSEEEECCSSC-----EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE-EEECCS---SC--EEEEEECSSCTTEE
T ss_pred ceeEeecCCCC-----eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE-EeecCC---CC--EEEEEECCCCCCEE
Confidence 11100000000 0123331 243 555554 7889999998732 22 222111 11 1233333 45 567
Q ss_pred EEEECCCeEEEEEEccC
Q 043460 254 YASRNQSTLLIWQLDDH 270 (368)
Q Consensus 254 ~~~~~~~~~~IW~l~~~ 270 (368)
+....+..+.||-+...
T Consensus 338 ~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 338 ASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEEETTSCCEEEEGGGT
T ss_pred EEEeCCCcEEEEeCCCC
Confidence 77777789999999874
No 171
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=51.51 E-value=1e+02 Score=25.38 Aligned_cols=186 Identities=11% Similarity=0.127 Sum_probs=96.3
Q ss_pred CCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR 182 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~ 182 (368)
.+|-+.+... ...++++||.++....++... .....++.+|+. +. ++.... ....+.+|+..+......
T Consensus 76 ~~g~l~v~~~--~~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~--g~--l~v~~~--~~~~i~~~~~~~~~~~~~ 144 (270)
T 1rwi_B 76 GAGTVYVTDF--NNRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQ--GA--VYVADR--GNNRVVKLAAGSKTQTVL 144 (270)
T ss_dssp TTCCEEEEET--TTEEEEECTTCSCCEECCCCS---CSSEEEEEECTT--CC--EEEEEG--GGTEEEEECTTCCSCEEC
T ss_pred CCCCEEEEcC--CCEEEEEeCCCceEeeeecCC---cCCCcceEECCC--CC--EEEEEC--CCCEEEEEECCCceeEee
Confidence 3565655542 568899999888766654322 123356777872 22 333322 234567776555443322
Q ss_pred cccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECC
Q 043460 183 KVSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQ 259 (368)
Q Consensus 183 ~~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~ 259 (368)
.. . ....-.++.+. +|.+|+... ...|..||..+.... ...... . .. ...++. .+|.|++.....
T Consensus 145 ~~--~-----~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~-~-~~--p~~i~~d~~g~l~v~~~~~ 212 (270)
T 1rwi_B 145 PF--T-----GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTD-I-TA--PWGIAVDEAGTVYVTEHNT 212 (270)
T ss_dssp CC--C-----SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSS-C-CS--EEEEEECTTCCEEEEETTT
T ss_pred cc--c-----cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE-eecccC-C-CC--ceEEEECCCCCEEEEECCC
Confidence 10 0 11111233331 588777664 578999999887665 332211 1 11 223443 367787777655
Q ss_pred CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCC
Q 043460 260 STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKT 337 (368)
Q Consensus 260 ~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t 337 (368)
..+.+|..+.. . ... +....+ ....-+++.+++. +|+. ...++..|++..
T Consensus 213 ~~v~~~~~~~~-~---------------~~~----~~~~~~-------~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 213 NQVVKLLAGST-T---------------STV----LPFTGL-------NTPLAVAVDSDRT-VYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp SCEEEECTTCS-C---------------CEE----CCCCSC-------SCEEEEEECTTCC-EEEEEGGGTEEEEECCCG
T ss_pred CcEEEEcCCCC-c---------------cee----eccCCC-------CCceeEEECCCCC-EEEEECCCCEEEEEcCCC
Confidence 56666543321 1 111 111111 1123345666666 5555 567888888876
Q ss_pred Ce
Q 043460 338 NK 339 (368)
Q Consensus 338 ~~ 339 (368)
.+
T Consensus 265 ~~ 266 (270)
T 1rwi_B 265 HH 266 (270)
T ss_dssp GG
T ss_pred cc
Confidence 54
No 172
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=51.37 E-value=99 Score=29.91 Aligned_cols=80 Identities=6% Similarity=0.037 Sum_probs=50.8
Q ss_pred EEEEEeCCCCC--ceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeE
Q 043460 168 EVDIFSSENKT--WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVI 245 (368)
Q Consensus 168 ~~~vyss~~~~--W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l 245 (368)
.+..++..+|+ |+..... ....+..+.. +|.+|.-+.++.+.+||..+++.....++|..... ....
T Consensus 467 ~l~A~D~~tG~~~W~~~~~~-------~~~~g~~~ta-gglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a---~P~~ 535 (582)
T 1flg_A 467 SLRAMDPVSGKVVWEHKEHL-------PLWAGVLATA-GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVS---PPIT 535 (582)
T ss_dssp EEEEECTTTCCEEEEEEESS-------CCCSCCEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS---CCEE
T ss_pred eEEEEECCCCCEEEEecCCC-------CCcccceEeC-CCEEEEECCCCcEEEEECCCCCEEEEecCCCCccc---CceE
Confidence 46667777775 7765421 1111223455 78888755588999999998876546777765433 2233
Q ss_pred EeeCCeEEEEEEC
Q 043460 246 GLCKGALNYASRN 258 (368)
Q Consensus 246 ~~~~G~L~~~~~~ 258 (368)
-+.+|++|++...
T Consensus 536 y~~~G~qYv~~~~ 548 (582)
T 1flg_A 536 WEQDGEQYLGVTV 548 (582)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEECCEEEEEEEc
Confidence 3579999988764
No 173
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=51.32 E-value=1.8e+02 Score=28.30 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=23.4
Q ss_pred cceEEEeCCeEEEEEe-CCeEEEEEc-CCCeE
Q 043460 197 LQSVYSRGGILYNLTY-RSTILRYNI-EALSE 226 (368)
Q Consensus 197 ~~~v~~~~G~lywl~~-~~~il~fD~-~~~~~ 226 (368)
..++.. +|.||.... .+.+.++|. .+++-
T Consensus 56 ~tP~v~-~g~vyv~~~~~~~v~AlD~~~tG~~ 86 (599)
T 1w6s_A 56 GAPLVV-DGKMYIHTSFPNNTFALGLDDPGTI 86 (599)
T ss_dssp SCCEEE-TTEEEEECSTTTCEEEEETTCTTSE
T ss_pred eccEEE-CCEEEEEeCCCCEEEEEeCCCCCcE
Confidence 446888 999999986 688999999 66543
No 174
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=51.05 E-value=1.8e+02 Score=28.24 Aligned_cols=193 Identities=11% Similarity=0.096 Sum_probs=99.7
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
+.+|-+++... ....+.|||..+++... +.. +......+.+.|. +.+ ++... ....+.+++.....=.
T Consensus 439 s~~g~~l~sgs-~Dg~v~vwd~~~~~~~~~~~~----h~~~v~~~~~s~~--~~~-l~s~s---~D~~i~iwd~~~~~~~ 507 (694)
T 3dm0_A 439 SSDGQFALSGS-WDGELRLWDLAAGVSTRRFVG----HTKDVLSVAFSLD--NRQ-IVSAS---RDRTIKLWNTLGECKY 507 (694)
T ss_dssp CTTSSEEEEEE-TTSEEEEEETTTTEEEEEEEC----CSSCEEEEEECTT--SSC-EEEEE---TTSCEEEECTTSCEEE
T ss_pred CCCCCEEEEEe-CCCcEEEEECCCCcceeEEeC----CCCCEEEEEEeCC--CCE-EEEEe---CCCEEEEEECCCCcce
Confidence 44555555443 67789999998876543 221 1122345566662 222 22222 2456777775443211
Q ss_pred eccccCCCCCceeeeccceEEEe-CC--eEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEE
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSR-GG--ILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYA 255 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~-~G--~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~ 255 (368)
........+ ... -.++.+. ++ .....+. ++.|..+|+.+.+....+.-.. .. -..+.. .+|++.+.
T Consensus 508 ~~~~~~~~h--~~~--v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~---~~--v~~v~~spdg~~l~s 578 (694)
T 3dm0_A 508 TISEGGEGH--RDW--VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT---GY--VSTVAVSPDGSLCAS 578 (694)
T ss_dssp EECSSTTSC--SSC--EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS---SC--EEEEEECTTSSEEEE
T ss_pred eeccCCCCC--CCc--EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC---CC--EEEEEEeCCCCEEEE
Confidence 111000000 000 0122220 22 1222222 7889999999877652222111 11 123333 37888877
Q ss_pred EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeEEEEEC
Q 043460 256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHL 335 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ydl 335 (368)
...+..+.||-+.... .+.++... ..+.-+.+.+++.++.......+..+|+
T Consensus 579 g~~Dg~i~iwd~~~~~-------------------~~~~~~~~---------~~v~~~~~sp~~~~l~~~~~~~i~iwd~ 630 (694)
T 3dm0_A 579 GGKDGVVLLWDLAEGK-------------------KLYSLEAN---------SVIHALCFSPNRYWLCAATEHGIKIWDL 630 (694)
T ss_dssp EETTSBCEEEETTTTE-------------------EEECCBCS---------SCEEEEEECSSSSEEEEEETTEEEEEET
T ss_pred EeCCCeEEEEECCCCc-------------------eEEEecCC---------CcEEEEEEcCCCcEEEEEcCCCEEEEEC
Confidence 7788899999886531 22222211 1244466777777777767778999999
Q ss_pred CCCeEEE
Q 043460 336 KTNKMEL 342 (368)
Q Consensus 336 ~t~~~~~ 342 (368)
++++...
T Consensus 631 ~~~~~~~ 637 (694)
T 3dm0_A 631 ESKSIVE 637 (694)
T ss_dssp TTTEEEE
T ss_pred CCCCChh
Confidence 9988643
No 175
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=50.83 E-value=1.2e+02 Score=26.15 Aligned_cols=72 Identities=11% Similarity=0.157 Sum_probs=42.6
Q ss_pred CCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eC
Q 043460 249 KGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SC 327 (368)
Q Consensus 249 ~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~ 327 (368)
+|.+.+....+..+.||.+..... .+..+..+.... ..+.-+.+.+++..+... .+
T Consensus 118 ~g~~las~s~D~~v~iwd~~~~~~---------------~~~~~~~~~~h~--------~~v~~v~~~p~~~~l~s~s~D 174 (330)
T 2hes_X 118 DGYYLATCSRDKSVWIWETDESGE---------------EYECISVLQEHS--------QDVKHVIWHPSEALLASSSYD 174 (330)
T ss_dssp TSCEEEEEETTSCEEEEECCTTCC---------------CCEEEEEECCCS--------SCEEEEEECSSSSEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEeccCCCC---------------CeEEEEEeccCC--------CceEEEEECCCCCEEEEEcCC
Confidence 566666666778999999865433 566555443111 123445566666655554 45
Q ss_pred CeEEEEECCCCeEEEe
Q 043460 328 DMIYRYHLKTNKMELF 343 (368)
Q Consensus 328 ~~~~~ydl~t~~~~~v 343 (368)
..+..+|..++.++.+
T Consensus 175 ~~i~iW~~~~~~~~~~ 190 (330)
T 2hes_X 175 DTVRIWKDYDDDWECV 190 (330)
T ss_dssp SCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCeeEE
Confidence 5677777766654433
No 176
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=49.96 E-value=1.5e+02 Score=26.93 Aligned_cols=208 Identities=7% Similarity=0.019 Sum_probs=103.9
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC-ce
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT-WI 180 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~-W~ 180 (368)
..+|-|.+... ....+.++|+.+++...+..... ... +++++. ++ .++..... ....+.+++..++. .+
T Consensus 139 d~~g~lyv~d~-~~~~I~~id~~~g~~~~~~~~~~----~~~-ia~~~~--g~-~l~~~d~~-~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 139 VGNNTVLAYQR-DDPRVRLISVDDNKVTTVHPGFK----GGK-PAVTKD--KQ-RVYSIGWE-GTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CSTTEEEEEET-TTTEEEEEETTTTEEEEEEETCC----BCB-CEECTT--SS-EEEEEBSS-TTCEEEEEEGGGTTCEE
T ss_pred eCCCCEEEEec-CCCcEEEEECCCCEEEEeeccCC----CCc-eeEecC--CC-cEEEEecC-CCceEEEEEcCCCceeE
Confidence 45677766654 45688999999988877643311 112 666762 23 23332211 12267777765442 12
Q ss_pred eccccCCCCCceeeeccceEEEe--CCeEEEEEeCCeEEEEEcCCCeEEEEEe-CCCCCCCCCCce-eEEee--CCeEEE
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSR--GGILYNLTYRSTILRYNIEALSEAEIIE-VPDKNNHPCDSE-VIGLC--KGALNY 254 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~--~G~lywl~~~~~il~fD~~~~~~~~~~~-lP~~~~~~~~~~-~l~~~--~G~L~~ 254 (368)
......... . ..-.++.+. +|.||+....+.|..||+.+.... .+. .+.......... .++.. +|.|++
T Consensus 209 ~~g~~~~~~--~--~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 209 RIGQLGSTF--S--GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEECCTTS--C--SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred Eeeeccchh--c--CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 221100100 0 111123331 588999443678999999988766 542 211111111111 44444 588888
Q ss_pred EEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeec---ccccc---CccccceEEEEEecCCCEEEEee--
Q 043460 255 ASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMD---EWGNK---LHVFGLTRFYNIHPNSDIIFLGS-- 326 (368)
Q Consensus 255 ~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~---~~~~~---~~~~~~~~~~~~~~~~~~v~~~~-- 326 (368)
......+ |++++... .-..+ .... .+.+. ...+....=+++.+++. +|+.+
T Consensus 284 ~d~~~~~--I~~~~~~g----------------~~~~~--~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~ 342 (409)
T 3hrp_A 284 SDQNLSS--VYKITPDG----------------ECEWF--CGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGF 342 (409)
T ss_dssp EETTTTE--EEEECTTC----------------CEEEE--EECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETT
T ss_pred EeCCCCE--EEEEecCC----------------CEEEE--EeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCC
Confidence 7765554 44444321 21111 1100 00000 00001233355667777 66653
Q ss_pred -CCeEEEEECCCCeEEEecc
Q 043460 327 -CDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 327 -~~~~~~ydl~t~~~~~v~~ 345 (368)
..++.++|+.+++++.+..
T Consensus 343 ~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 343 KGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TTCEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCEEEEEeC
Confidence 4689999988888877654
No 177
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=49.75 E-value=1.2e+02 Score=25.69 Aligned_cols=183 Identities=9% Similarity=0.062 Sum_probs=97.1
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....+.|||..+++....-.. .......+.+.|. +.+ +.... ....+.+|+.+++.-...-..... +.
T Consensus 43 ~dg~i~iw~~~~~~~~~~~~~---h~~~v~~~~~~~~--~~~--l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~--~v- 110 (312)
T 4ery_A 43 ADKLIKIWGAYDGKFEKTISG---HKLGISDVAWSSD--SNL--LVSAS--DDKTLKIWDVSSGKCLKTLKGHSN--YV- 110 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECC---CSSCEEEEEECTT--SSE--EEEEE--TTSEEEEEETTTCCEEEEEECCSS--CE-
T ss_pred CCCeEEEEeCCCcccchhhcc---CCCceEEEEEcCC--CCE--EEEEC--CCCEEEEEECCCCcEEEEEcCCCC--CE-
Confidence 566788999888776543211 1122345666662 222 22222 356788999887653221100000 00
Q ss_pred eeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEEEEccC
Q 043460 194 FYVLQSVYS-RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 194 ~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
.++.+ .+|.+...+. ++.|..+|+.+.+....+.. .... ...+.. .+|.+.+....+..+.+|-+...
T Consensus 111 ----~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~---v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 181 (312)
T 4ery_A 111 ----FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA--HSDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181 (312)
T ss_dssp ----EEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC--CSSC---EEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ----EEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC--CCCc---EEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 01111 0343333333 77899999988765413322 1111 112332 36777777777889999987652
Q ss_pred CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEEe
Q 043460 271 RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMELF 343 (368)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~v 343 (368)
.- +..+.... . .....+.+.+++..++.. .+..+..||+++.+....
T Consensus 182 -----------------~~--~~~~~~~~----~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 182 -----------------QC--LKTLIDDD----N---PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp -----------------CE--EEEECCSS----C---CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred -----------------ce--eeEEeccC----C---CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 11 12221110 0 124446677777776666 567899999998886543
No 178
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=49.48 E-value=1.1e+02 Score=29.78 Aligned_cols=79 Identities=9% Similarity=0.044 Sum_probs=49.5
Q ss_pred EEEEEeCCCCC--ceeccccCCCCCceeeeccce-EEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCcee
Q 043460 168 EVDIFSSENKT--WITRKVSVKPRRPVSFYVLQS-VYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEV 244 (368)
Q Consensus 168 ~~~vyss~~~~--W~~~~~~~~~~~p~~~~~~~~-v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~ 244 (368)
.+..++..+|+ |+..... . ..+.+ +.. +|.+|.-+.++.+.+||..+++-....++|..... ...
T Consensus 454 ~l~A~D~~tG~~~W~~~~~~-------~-~~~g~~~ta-gg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~---~P~ 521 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKMERF-------A-VWGGTMATA-GDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG---YPM 521 (599)
T ss_dssp EEEEECTTTCCEEEEEEESS-------C-CCSBCEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS---CCE
T ss_pred eEEEEECCCCCEEeEecCCC-------C-ccCcceEec-CCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEe---ccE
Confidence 45556666664 7654311 0 11222 345 78888755588999999999876545678865443 334
Q ss_pred EEeeCCeEEEEEEC
Q 043460 245 IGLCKGALNYASRN 258 (368)
Q Consensus 245 l~~~~G~L~~~~~~ 258 (368)
.-+.+|++|++...
T Consensus 522 ~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 522 TYTHKGTQYVAIYY 535 (599)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEeCCEEEEEEEc
Confidence 44679999887763
No 179
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=48.92 E-value=1.4e+02 Score=26.18 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=72.9
Q ss_pred CCeeEEEEcccC------ccceecCCC-C--------cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC
Q 043460 114 SKHRYYVCNPLT------KQCVAIPKA-R--------EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT 178 (368)
Q Consensus 114 ~~~~~~v~NP~T------~~~~~lP~~-~--------~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~ 178 (368)
....+.+||..+ ++...+.+. . .........+.+.|. . .++ ... ....+.+|+.+++.
T Consensus 146 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~-~l~-~~~--~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 146 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER---G-LIA-TGF--NNGTVQISELSTLR 218 (397)
T ss_dssp TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT---S-EEE-EEC--TTSEEEEEETTTTE
T ss_pred CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC---c-eEE-EEe--CCCcEEEEECCCCc
Confidence 567889999888 554432111 1 011223456677762 3 333 332 35678999998765
Q ss_pred ceeccccCC-C---CCceeeeccceEEE-eCCeEEEEEe-C---CeEEEEEcCCCeEEEEEeCCCCCC--------CCCC
Q 043460 179 WITRKVSVK-P---RRPVSFYVLQSVYS-RGGILYNLTY-R---STILRYNIEALSEAEIIEVPDKNN--------HPCD 241 (368)
Q Consensus 179 W~~~~~~~~-~---~~p~~~~~~~~v~~-~~G~lywl~~-~---~~il~fD~~~~~~~~~~~lP~~~~--------~~~~ 241 (368)
-...-.... . ..+. .++.+ .+|.+...+. + +.|..+|+.+.+....+..|.... ....
T Consensus 219 ~~~~~~~~~~h~~~~~~i-----~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 219 PLYNFESQHSMINNSNSI-----RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp EEEEEECCC---CCCCCE-----EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC
T ss_pred eeEEEeccccccccCCcc-----ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc
Confidence 322211100 0 0001 12222 1455444444 5 789999998876542444321100 0000
Q ss_pred ceeEEe-eCCeEEEEEECCCeEEEEEEcc
Q 043460 242 SEVIGL-CKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 242 ~~~l~~-~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
...+.. .+|.+.+....+..+.||-+..
T Consensus 294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 123333 3677777777788999998755
No 180
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=48.64 E-value=2e+02 Score=27.92 Aligned_cols=149 Identities=14% Similarity=0.149 Sum_probs=75.5
Q ss_pred cEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCe-EEEEEeC-----CeEEEEEcCCC-eEEEEEeCCCCCCCC
Q 043460 167 PEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGI-LYNLTYR-----STILRYNIEAL-SEAEIIEVPDKNNHP 239 (368)
Q Consensus 167 ~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~-lywl~~~-----~~il~fD~~~~-~~~~~~~lP~~~~~~ 239 (368)
..+.+++..++.-.......... .....-...- +|. |+..... ..|..+|+.+. ... .+.........
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~-~~~~~~~~~~~ 309 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKE---KFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVR-TLFVETDKHYV 309 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTT---CEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEE-EEEEEECSSCC
T ss_pred eEEEEEECCCCceEeeccCCCCc---eeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceee-EEEEccCCCeE
Confidence 46778888877644433110000 0000001112 554 5544333 37899999988 665 33211111000
Q ss_pred -CCceeEEee--CCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEe
Q 043460 240 -CDSEVIGLC--KGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIH 316 (368)
Q Consensus 240 -~~~~~l~~~--~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~ 316 (368)
......... +|++.++...+...+||.++..++ ... .+..... ....++++.
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---------------~~~---~l~~~~~-------~v~~~~~~s 364 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR---------------LIR---QVTKGEW-------EVTNFAGFD 364 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC---------------EEE---ECCCSSS-------CEEEEEEEC
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEECCCC---------------EEE---ecCCCCe-------EEEeeeEEc
Confidence 001112233 788665555556789999884322 222 2211110 112235677
Q ss_pred cCCCEEEEe--eC----CeEEEEECCCCeEEEecc
Q 043460 317 PNSDIIFLG--SC----DMIYRYHLKTNKMELFST 345 (368)
Q Consensus 317 ~~~~~v~~~--~~----~~~~~ydl~t~~~~~v~~ 345 (368)
++++.|++. .. ..++.+|+++++.+.+..
T Consensus 365 pdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 399 (706)
T 2z3z_A 365 PKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTP 399 (706)
T ss_dssp TTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCC
T ss_pred CCCCEEEEEecCCCCceEEEEEEEcCCCCceeccC
Confidence 788777665 22 378999998888776654
No 181
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=47.38 E-value=1.2e+02 Score=25.22 Aligned_cols=105 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCC
Q 043460 204 GGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAA 283 (368)
Q Consensus 204 ~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~ 283 (368)
+|.+.--..++.|..+|+.+.+....+........ .+........+....+..+.||-+..
T Consensus 195 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-----~~~~~~~~~l~~~~~dg~v~iwd~~~-------------- 255 (313)
T 3odt_A 195 DGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVY-----CIKLLPNGDIVSCGEDRTVRIWSKEN-------------- 255 (313)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-----EEEECTTSCEEEEETTSEEEEECTTT--------------
T ss_pred CCeEEEccCCCeEEEEECCchhhhhhhhcCCceEE-----EEEEecCCCEEEEecCCEEEEEECCC--------------
Q ss_pred CCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeEEEEECCCCeE
Q 043460 284 SGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKM 340 (368)
Q Consensus 284 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ydl~t~~~ 340 (368)
...+..+.... ..+.-+.+.+++.++....+..+..||++++++
T Consensus 256 -----~~~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 256 -----GSLKQVITLPA--------ISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp -----CCEEEEEECSS--------SCEEEEEECTTSCEEEEETTSCEEEEESCGGGC
T ss_pred -----CceeEEEeccC--------ceEEEEEEccCCCEEEEeCCCcEEEEeCCCCce
No 182
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=47.26 E-value=1.5e+02 Score=26.06 Aligned_cols=185 Identities=10% Similarity=0.036 Sum_probs=86.3
Q ss_pred EEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCC-CCCceeccccCCCCCceeeeccc
Q 043460 120 VCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSE-NKTWITRKVSVKPRRPVSFYVLQ 198 (368)
Q Consensus 120 v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~-~~~W~~~~~~~~~~~p~~~~~~~ 198 (368)
-+|+.|++...+...+........++.++|. +.+ ++.... . .+.+|+.. ++.-...........|...
T Consensus 20 ~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd--g~~-l~~~~~---~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~---- 88 (365)
T 1jof_A 20 QFDDEKLTCKLIKRTEIPQDEPISWMTFDHE--RKN-IYGAAM---K-KWSSFAVKSPTEIVHEASHPIGGHPRAN---- 88 (365)
T ss_dssp EEETTTTEEEEEEEEECCTTCCCSEEEECTT--SSE-EEEEEB---T-EEEEEEEEETTEEEEEEEEECCSSGGGG----
T ss_pred EEECCCCCEEEeeEEccCCCCCCcEEEECCC--CCE-EEEEcc---c-eEEEEEECCCCCEEEeeEeecCCCCccE----
Confidence 4678888766553211111113446777772 333 333322 2 78888876 6654322110000112111
Q ss_pred eEEEeCCeE-EE-EE--------------eCCeEEEEEcCC-CeEEEEEe-CCCCCCCCCCceeEEe-eCCe-EEEEEEC
Q 043460 199 SVYSRGGIL-YN-LT--------------YRSTILRYNIEA-LSEAEIIE-VPDKNNHPCDSEVIGL-CKGA-LNYASRN 258 (368)
Q Consensus 199 ~v~~~~G~l-yw-l~--------------~~~~il~fD~~~-~~~~~~~~-lP~~~~~~~~~~~l~~-~~G~-L~~~~~~ 258 (368)
.+.- +|.. |. .+ ..+.+.+|++.. .+....+. .+...... ...+.. .+|+ |++....
T Consensus 89 ~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~spdG~~l~~~~~~ 165 (365)
T 1jof_A 89 DADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTG--IHGMVFDPTETYLYSADLT 165 (365)
T ss_dssp CTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCC--EEEEEECTTSSEEEEEETT
T ss_pred EECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCc--ceEEEECCCCCEEEEEcCC
Confidence 1112 4541 22 11 245677888863 44331222 11111111 223333 3676 4444445
Q ss_pred CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee--CCeEEEEE--
Q 043460 259 QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS--CDMIYRYH-- 334 (368)
Q Consensus 259 ~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~yd-- 334 (368)
...+.+|.++. ++ +...+..+..+.-. ...+-+++.+++..+|+.. ...+..|+
T Consensus 166 ~~~v~~~~~~~-~g---------------~~~~~~~~~~~~~g------~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 166 ANKLWTHRKLA-SG---------------EVELVGSVDAPDPG------DHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TTEEEEEEECT-TS---------------CEEEEEEEECSSTT------CCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEECC-CC---------------CEEEeeeEecCCCC------CCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 67889998874 23 44444444321101 1234467888888888763 45666655
Q ss_pred CCCCeE
Q 043460 335 LKTNKM 340 (368)
Q Consensus 335 l~t~~~ 340 (368)
.+++++
T Consensus 224 ~~~g~~ 229 (365)
T 1jof_A 224 PATHMP 229 (365)
T ss_dssp TTTCCE
T ss_pred CCCCcE
Confidence 445654
No 183
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=47.05 E-value=1.3e+02 Score=25.26 Aligned_cols=141 Identities=10% Similarity=0.053 Sum_probs=67.9
Q ss_pred CCeeEEEEcccCccceecCCCCcC-CCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 114 SKHRYYVCNPLTKQCVAIPKARED-VLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~-~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
....+.|||..+++.......... .......+.+.+. .... +..........+.+++...+.-......... .
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~--~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~---v 243 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW-QSNV--LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---V 243 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT-STTE--EEEEECTTTCEEEEEETTTCCEEEEEECSSC---E
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCC-CCcE--EEEEecCCCCEEEEEecccccccccccceee---e
Confidence 556788999888765433222111 1112223444442 2222 2222222345677777776653332211000 0
Q ss_pred eeeccceEEEeCCeEEEEE-e--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEEEECCCeEEEEEEc
Q 043460 193 SFYVLQSVYSRGGILYNLT-Y--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYASRNQSTLLIWQLD 268 (368)
Q Consensus 193 ~~~~~~~v~~~~G~lywl~-~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~IW~l~ 268 (368)
....... ++.....+ + ++.|..+|..+.+-...+.- .. .. -..+..+ +|.+.+....+.++.||.+.
T Consensus 244 ---~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g--H~-~~--V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 244 ---CSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HT-SR--VLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp ---EEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CS-SC--EEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred ---eeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEEEEcC--CC-CC--EEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 0011222 33333332 2 57799999988765423321 11 11 2233333 67777777788899999876
Q ss_pred c
Q 043460 269 D 269 (368)
Q Consensus 269 ~ 269 (368)
+
T Consensus 315 ~ 315 (318)
T 4ggc_A 315 E 315 (318)
T ss_dssp C
T ss_pred C
Confidence 5
No 184
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=46.02 E-value=2.2e+02 Score=27.81 Aligned_cols=162 Identities=14% Similarity=0.218 Sum_probs=85.7
Q ss_pred eeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC--CceeccccCCCCCceeeeccceEEEeCCeEEEEEe----CCeEE
Q 043460 144 ALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK--TWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----RSTIL 217 (368)
Q Consensus 144 ~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~--~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----~~~il 217 (368)
+..+.| .+.|-++..........+.+.+..++ .|+........ ....+...++.+|+++. ...|+
T Consensus 238 ~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~-------~~~~~~~~g~~l~~~t~~~~~~~~l~ 308 (693)
T 3iuj_A 238 GATVTE--DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA-------DVSLVDNKGSTLYLLTNRDAPNRRLV 308 (693)
T ss_dssp EEEECT--TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS-------CEEEEEEETTEEEEEECTTCTTCEEE
T ss_pred EEEEcC--CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc-------eEEEEeccCCEEEEEECCCCCCCEEE
Confidence 344544 34554444332223347777787665 67665421110 01123332778988886 36799
Q ss_pred EEEcCCC---eEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEE
Q 043460 218 RYNIEAL---SEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHS 294 (368)
Q Consensus 218 ~fD~~~~---~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~ 294 (368)
++|+.+. .|+.++ |... . .......++.|.+....+..-+|++++-.+ .+.. .
T Consensus 309 ~~d~~~~~~~~~~~l~--~~~~-~---~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g----------------~~~~--~ 364 (693)
T 3iuj_A 309 TVDAANPGPAHWRDLI--PERQ-Q---VLTVHSGSGYLFAEYMVDATARVEQFDYEG----------------KRVR--E 364 (693)
T ss_dssp EEETTSCCGGGCEEEE--CCCS-S---CEEEEEETTEEEEEEEETTEEEEEEECTTS----------------CEEE--E
T ss_pred EEeCCCCCccccEEEe--cCCC-C---EEEEEEECCEEEEEEEECCeeEEEEEECCC----------------CeeE--E
Confidence 9999874 356233 2221 1 123334466787777766555666665432 3332 2
Q ss_pred eeeccccccCccccceEEEEEecCCCEEEEe-e----CCeEEEEECCCCeEEEecc
Q 043460 295 ICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-S----CDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 295 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~----~~~~~~ydl~t~~~~~v~~ 345 (368)
+.++... ....++..++++.+++. . ...++.||+++++.+.+..
T Consensus 365 l~~p~~~-------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 365 VALPGLG-------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp ECCSSSS-------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEEC
T ss_pred eecCCCc-------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEe
Confidence 3322111 11112223455555554 3 3789999999998877665
No 185
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=45.56 E-value=1.6e+02 Score=25.89 Aligned_cols=150 Identities=11% Similarity=0.093 Sum_probs=68.3
Q ss_pred cCCcEEEEeecCC-----CeeEEEEcccCccceecC-CCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCC
Q 043460 102 CCNGLILLGSSLS-----KHRYYVCNPLTKQCVAIP-KAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSE 175 (368)
Q Consensus 102 s~~Glll~~~~~~-----~~~~~v~NP~T~~~~~lP-~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~ 175 (368)
+-+|-+|+..... ...+.+|+..+++...-. ............+.+.|. . +++... ....+.+++..
T Consensus 51 SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d---~-~~l~~s---~dg~v~lWd~~ 123 (357)
T 4g56_B 51 RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE---K-GILVAS---DSGAVELWEIL 123 (357)
T ss_dssp CSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT---T-EEEEEE---TTSCEEEC---
T ss_pred CCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC---C-CEEEEE---CCCEEEEeecc
Confidence 5577766665411 457888988776543321 111112223345666662 2 333332 23467888777
Q ss_pred CCCceeccccCCCCCceeeec--c--ceEEE-eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-
Q 043460 176 NKTWITRKVSVKPRRPVSFYV--L--QSVYS-RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC- 248 (368)
Q Consensus 176 ~~~W~~~~~~~~~~~p~~~~~--~--~~v~~-~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~- 248 (368)
++.-..... ..... . .++.+ .+|.....+. ++.|..+|+.+.+....+..... . ...+...
T Consensus 124 ~~~~~~~~~-------~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~---~--v~~v~~s~ 191 (357)
T 4g56_B 124 EKESLLVNK-------FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS---E--VNCVAACP 191 (357)
T ss_dssp -----CCCC-------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSS---C--EEEEEECT
T ss_pred ccceeEEEe-------eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCC---C--EEEEEEcc
Confidence 664222110 01000 0 12222 1455444443 67899999998876523322111 1 1233333
Q ss_pred CC-eEEEEEECCCeEEEEEEccC
Q 043460 249 KG-ALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 249 ~G-~L~~~~~~~~~~~IW~l~~~ 270 (368)
++ .+.+....+..+.||-+...
T Consensus 192 ~~~~~~~s~~~dg~v~~wd~~~~ 214 (357)
T 4g56_B 192 GKDTIFLSCGEDGRILLWDTRKP 214 (357)
T ss_dssp TCSSCEEEEETTSCEEECCTTSS
T ss_pred CCCceeeeeccCCceEEEECCCC
Confidence 34 45566667788999976553
No 186
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=45.53 E-value=1.4e+02 Score=25.38 Aligned_cols=144 Identities=12% Similarity=0.123 Sum_probs=73.2
Q ss_pred CcEEEEEeCCCCCceeccccCCC-CCceeeeccceEEEeCCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCC-CCC
Q 043460 166 DPEVDIFSSENKTWITRKVSVKP-RRPVSFYVLQSVYSRGGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNH-PCD 241 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~~~~-~~p~~~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~-~~~ 241 (368)
...+.+++..++.....-. ... ..|... .+.- +|. +|.... ...|..+|+.+.+....+.++..... ...
T Consensus 20 ~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~----~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~ 93 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKSCV-MPDKFGPGTA----MMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS 93 (349)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCCSSCEE----EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEEC
T ss_pred CCeEEEEECCCCcEEEEEe-cCCCCCCcee----EECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccc
Confidence 5678899998886433221 111 001111 1222 565 444443 67899999998876535666532100 000
Q ss_pred ceeEE-eeCCeEEEEEE-C-----------CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCcccc
Q 043460 242 SEVIG-LCKGALNYASR-N-----------QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFG 308 (368)
Q Consensus 242 ~~~l~-~~~G~L~~~~~-~-----------~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~ 308 (368)
...+. ..+|+..++.. + ...+.+|-++..... .-. .....+.
T Consensus 94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------------~~~--~~~~~~~--------- 148 (349)
T 1jmx_B 94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA--------------KPV--RTFPMPR--------- 148 (349)
T ss_dssp SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB--------------CCS--EEEECCS---------
T ss_pred ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc--------------cee--eeccCCC---------
Confidence 11233 33665444433 2 367777777652110 111 1111111
Q ss_pred ceEEEEEecCCCEEEEeeCCeEEEEECCCCeEEE
Q 043460 309 LTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 309 ~~~~~~~~~~~~~v~~~~~~~~~~ydl~t~~~~~ 342 (368)
...-+++.+++. +|+. ...++.+|+++.+...
T Consensus 149 ~~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 149 QVYLMRAADDGS-LYVA-GPDIYKMDVKTGKYTV 180 (349)
T ss_dssp SCCCEEECTTSC-EEEE-SSSEEEECTTTCCEEE
T ss_pred cccceeECCCCc-EEEc-cCcEEEEeCCCCceec
Confidence 112245777777 6664 4459999999988654
No 187
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=44.61 E-value=1.7e+02 Score=25.91 Aligned_cols=146 Identities=10% Similarity=0.085 Sum_probs=80.5
Q ss_pred ecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 101 DCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 101 ~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
+..+|.|...+. ....++.+++.++....+.... .....++++|+. .+ +++.... ....+++++.+...-+
T Consensus 81 d~~~~~ly~~D~-~~~~I~r~~~~g~~~~~~~~~~---~~~p~glavd~~-~g--~ly~~d~--~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 81 HHRRELVFWSDV-TLDRILRANLNGSNVEEVVSTG---LESPGGLAVDWV-HD--KLYWTDS--GTSRIEVANLDGAHRK 151 (349)
T ss_dssp ETTTTEEEEEET-TTTEEEEEETTSCSCEEEECSS---CSCCCEEEEETT-TT--EEEEEET--TTTEEEEEETTSCSCE
T ss_pred eccccEEEEEec-cCCceEEEecCCCCceEEEeCC---CCCccEEEEecC-CC--eEEEEcC--CCCeEEEEcCCCCceE
Confidence 446777777664 4567888888877655542221 123468888873 22 3333332 3457888887754422
Q ss_pred eccccCCCCCceeeeccceEEEe--CCeEEEEEe-C-CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe--eCCeEEE
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSR--GGILYNLTY-R-STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL--CKGALNY 254 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~--~G~lywl~~-~-~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~--~~G~L~~ 254 (368)
.... .. .. .-.++.+. +|.|||... . ..|.++|+...... .+ ....... .-.++. .+|+||+
T Consensus 152 ~l~~---~~--l~--~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~-~~~~~~~---PnGla~d~~~~~lY~ 219 (349)
T 3v64_C 152 VLLW---QS--LE--KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-II-ADTHLFW---PNGLTIDYAGRRMYW 219 (349)
T ss_dssp EEEC---TT--CS--CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-ES-CCSSCSC---EEEEEEETTTTEEEE
T ss_pred EEEe---CC--CC--CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-EE-EECCCCC---cceEEEeCCCCEEEE
Confidence 2211 10 11 11234442 689999876 3 78999999876544 32 1111111 223444 3788998
Q ss_pred EEECCCeEEEEEEcc
Q 043460 255 ASRNQSTLLIWQLDD 269 (368)
Q Consensus 255 ~~~~~~~~~IW~l~~ 269 (368)
+.....+ |++.+-
T Consensus 220 aD~~~~~--I~~~~~ 232 (349)
T 3v64_C 220 VDAKHHV--IERANL 232 (349)
T ss_dssp EETTTTE--EEEEET
T ss_pred EECCCCE--EEEEeC
Confidence 8775554 444443
No 188
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=44.40 E-value=1.6e+02 Score=25.51 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=79.2
Q ss_pred EEEecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC
Q 043460 98 ALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK 177 (368)
Q Consensus 98 ~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~ 177 (368)
.+.++.+|.+.+.. ......++|..+++...--... .......+.+.|...+.+ +.... ....+.+|+.+++
T Consensus 88 ~~s~s~D~~i~~w~--~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~--l~s~s--~dg~i~~wd~~~~ 159 (343)
T 3lrv_A 88 IISRGPCNRLLLLY--PGNQITILDSKTNKVLREIEVD--SANEIIYMYGHNEVNTEY--FIWAD--NRGTIGFQSYEDD 159 (343)
T ss_dssp EEEECSTTEEEEEE--TTTEEEEEETTTCCEEEEEECC--CSSCEEEEECCC---CCE--EEEEE--TTCCEEEEESSSS
T ss_pred eEEecCCCeEEEEE--ccCceEEeecCCcceeEEeecC--CCCCEEEEEcCCCCCCCE--EEEEe--CCCcEEEEECCCC
Confidence 55666788887776 4557778888887733211111 111234455665222333 22222 2456888998877
Q ss_pred CceeccccCCCCCceeeeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEE
Q 043460 178 TWITRKVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNY 254 (368)
Q Consensus 178 ~W~~~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~ 254 (368)
.-.......... .-.++.+ .+|.+...+. ++.|..+|+.+.+.. ...+....... -..+..+ +|...+
T Consensus 160 ~~~~~~~~~~~~------~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~--v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 160 SQYIVHSAKSDV------EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA-SSRFPVDEEAK--IKEVKFADNGYWMV 230 (343)
T ss_dssp CEEEEECCCSSC------CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-CEECCCCTTSC--EEEEEECTTSSEEE
T ss_pred cEEEEEecCCCC------ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-ccEEeccCCCC--EEEEEEeCCCCEEE
Confidence 643221100000 0111222 1555555544 788999999987643 22333211111 2233333 666666
Q ss_pred EEECCCeEEEEEEccC
Q 043460 255 ASRNQSTLLIWQLDDH 270 (368)
Q Consensus 255 ~~~~~~~~~IW~l~~~ 270 (368)
...++ .+.||-+...
T Consensus 231 s~~~~-~v~iwd~~~~ 245 (343)
T 3lrv_A 231 VECDQ-TVVCFDLRKD 245 (343)
T ss_dssp EEESS-BEEEEETTSS
T ss_pred EEeCC-eEEEEEcCCC
Confidence 65555 9999988775
No 189
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=43.93 E-value=2.4e+02 Score=27.51 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=36.4
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe--eCCeEEEEEECCCeEEEEEEcc
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL--CKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~--~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
+|.|||... ...|.++++.......++..... . ...++. .+|.||++..... .|++.+.
T Consensus 48 ~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~--~---P~GlAvD~~~~~LY~tD~~~~--~I~v~~~ 109 (628)
T 4a0p_A 48 DNRIYWTDISLKTISRAFMNGSALEHVVEFGLD--Y---PEGMAVDWLGKNLYWADTGTN--RIEVSKL 109 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSSCS--C---CCEEEEETTTTEEEEEETTTT--EEEEEET
T ss_pred CCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC--C---cceEEEEeCCCEEEEEECCCC--EEEEEec
Confidence 689999876 67899999987665523332211 1 224444 3688888766544 4455544
No 190
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=43.87 E-value=1.5e+02 Score=25.29 Aligned_cols=150 Identities=14% Similarity=0.031 Sum_probs=75.9
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK 183 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~ 183 (368)
+|-|.+... ...+++.+||.++....++... ...++.+++. +. ++..........+..|+..+++.+...
T Consensus 42 ~g~lyv~d~-~~~~I~~~d~~g~~~~~~~~~~-----~p~gia~~~d--G~--l~vad~~~~~~~v~~~d~~~g~~~~~~ 111 (306)
T 2p4o_A 42 DGTIFVTNH-EVGEIVSITPDGNQQIHATVEG-----KVSGLAFTSN--GD--LVATGWNADSIPVVSLVKSDGTVETLL 111 (306)
T ss_dssp TSCEEEEET-TTTEEEEECTTCCEEEEEECSS-----EEEEEEECTT--SC--EEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred CCCEEEEeC-CCCeEEEECCCCceEEEEeCCC-----CceeEEEcCC--Cc--EEEEeccCCcceEEEEcCCCCeEEEEE
Confidence 565555543 4567888999876444333211 2346777762 33 333322112335667788888776543
Q ss_pred ccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEe-CCC----CC-CCCCCceeEEeeCCeEEEEE
Q 043460 184 VSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIE-VPD----KN-NHPCDSEVIGLCKGALNYAS 256 (368)
Q Consensus 184 ~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~-lP~----~~-~~~~~~~~l~~~~G~L~~~~ 256 (368)
.. +. .....+..+.. ++.+|.... .+.|..+|+.+.+.+ +.. -+. .. ......-.+...++.|++..
T Consensus 112 ~~-~~---~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~-v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d 185 (306)
T 2p4o_A 112 TL-PD---AIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS-IWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN 185 (306)
T ss_dssp EC-TT---CSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE-EEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE
T ss_pred eC-CC---ccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe-EEEECCccccccccCCCCcCCCcCcCCCEEEEEe
Confidence 22 11 11112222333 666777653 678999999875433 211 010 00 01101122333345788877
Q ss_pred ECCCeEEEEEEcc
Q 043460 257 RNQSTLLIWQLDD 269 (368)
Q Consensus 257 ~~~~~~~IW~l~~ 269 (368)
....++..+.++.
T Consensus 186 ~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 186 TEKMLLLRIPVDS 198 (306)
T ss_dssp TTTTEEEEEEBCT
T ss_pred CCCCEEEEEEeCC
Confidence 7666666665543
No 191
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=43.41 E-value=2e+02 Score=28.40 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=37.8
Q ss_pred eEEEe--CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEcc
Q 043460 199 SVYSR--GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 199 ~v~~~--~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
++.+. +|.|||... ...|.+||+.....+.++..+..... ...|+..++.|+++.....+ |++++.
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~---P~glavd~~~lywtd~~~~~--V~~~d~ 612 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH---PFSLAVFEDKVFWTDIINEA--IFSANR 612 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSS---CCCCEEETTEEEEECSTTTC--EEEEET
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCC---ceEeEEECCEEEEEeCCCCe--EEEEEc
Confidence 45551 488999886 57899999987555513332222111 22445566788877754443 444443
No 192
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=42.30 E-value=1.7e+02 Score=25.31 Aligned_cols=102 Identities=7% Similarity=0.065 Sum_probs=57.2
Q ss_pred CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEE
Q 043460 213 RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWIL 291 (368)
Q Consensus 213 ~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~ 291 (368)
++.|..+|..+.+....++..... ...+. ..+|.+.+....+..+.||.+..... ....
T Consensus 76 Dg~v~iWd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~---------------~~~~ 135 (340)
T 1got_B 76 DGKLIIWDSYTTNKVHAIPLRSSW-----VMTCAYAPSGNYVACGGLDNICSIYNLKTREG---------------NVRV 135 (340)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSC-----EEEEEECTTSSEEEEEETTCEEEEEETTTCSB---------------SCEE
T ss_pred CCcEEEEECCCCCcceEeecCCcc-----EEEEEECCCCCEEEEEeCCCeEEEEECccCCC---------------ccee
Confidence 678888998876654244332211 11222 23677777777788999999876433 3333
Q ss_pred EEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeEEEEECCCCeEEE
Q 043460 292 KHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ydl~t~~~~~ 342 (368)
...+.-.. ..+.-+.+.+++.++.-..+..+..+|+++++...
T Consensus 136 ~~~~~~h~--------~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~ 178 (340)
T 1got_B 136 SRELAGHT--------GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 178 (340)
T ss_dssp EEEEECCS--------SCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEecCCC--------ccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEE
Confidence 33332110 12333444544443333356778888988877544
No 193
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=41.97 E-value=2e+02 Score=25.98 Aligned_cols=105 Identities=11% Similarity=0.093 Sum_probs=64.9
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccC
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKA 282 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~ 282 (368)
+|.....+. ++.|..+|+.+.+....+..... .......++...+....+..+.+|.+.....
T Consensus 321 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~------~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~---------- 384 (464)
T 3v7d_B 321 ERKRCISASMDTTIRIWDLENGELMYTLQGHTA------LVGLLRLSDKFLVSAAADGSIRGWDANDYSR---------- 384 (464)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEECCCSS------CEEEEEECSSEEEEEETTSEEEEEETTTCCE----------
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC------cEEEEEEcCCEEEEEeCCCcEEEEECCCCce----------
Confidence 444433333 67899999988765423322111 1222233567666777788999998876422
Q ss_pred CCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeEEEEECCCCeEEE
Q 043460 283 ASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ydl~t~~~~~ 342 (368)
.+. .... .....+.+.+++.++....++.+..||+++++.-.
T Consensus 385 -----~~~----~~~~---------~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 385 -----KFS----YHHT---------NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 426 (464)
T ss_dssp -----EEE----EECT---------TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEE
T ss_pred -----eee----ecCC---------CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEe
Confidence 222 1111 12344567778888777788899999999998765
No 194
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=41.58 E-value=1.8e+02 Score=25.57 Aligned_cols=147 Identities=8% Similarity=0.043 Sum_probs=74.5
Q ss_pred CcEEEEEeCCCCCceeccc-cCCCCCceeeeccceEEEe--CCeEEEEEe-CCeEEEEEcCCC--eEEEEEeCCCCCCCC
Q 043460 166 DPEVDIFSSENKTWITRKV-SVKPRRPVSFYVLQSVYSR--GGILYNLTY-RSTILRYNIEAL--SEAEIIEVPDKNNHP 239 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~-~~~~~~p~~~~~~~~v~~~--~G~lywl~~-~~~il~fD~~~~--~~~~~~~lP~~~~~~ 239 (368)
...+.+|+.+++.-...-. ..+.. +...-.++.+. ++.+...+. ++.|..+|+... ... .+.-... .
T Consensus 179 D~~i~~wd~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~-~~~~h~~--~- 251 (380)
T 3iz6_a 179 DQTCVLWDVTTGQRISIFGSEFPSG---HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR-TYHGHEG--D- 251 (380)
T ss_dssp TSCEEEECTTTCCEEEEECCCSSSS---CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE-EECCCSS--C-
T ss_pred CCcEEEEEcCCCcEEEEeecccCCC---CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE-EECCcCC--C-
Confidence 4578888888876432210 00000 00000122220 344444444 788899998743 222 2221111 1
Q ss_pred CCceeEE-eeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecC
Q 043460 240 CDSEVIG-LCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPN 318 (368)
Q Consensus 240 ~~~~~l~-~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 318 (368)
-..+. ..+|...+....+.++.||-+.... - +..+....-... .....+.-+++.++
T Consensus 252 --v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~-----------------~--~~~~~~~~~~~~-~~~~~v~~~~~s~~ 309 (380)
T 3iz6_a 252 --INSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-----------------Q--LQVYNREPDRND-NELPIVTSVAFSIS 309 (380)
T ss_dssp --CCEEEECTTSSEEEEECSSSCEEEEETTTTE-----------------E--EEEECCCCSSSC-CSSCSCSEEEECSS
T ss_pred --eEEEEEecCCCeEEEEcCCCeEEEEECCCCc-----------------E--EEEecccccccc-cccCceEEEEECCC
Confidence 11333 3367777777778899999887631 1 111111100000 00012344677888
Q ss_pred CCEEEEe-eCCeEEEEECCCCeEE
Q 043460 319 SDIIFLG-SCDMIYRYHLKTNKME 341 (368)
Q Consensus 319 ~~~v~~~-~~~~~~~ydl~t~~~~ 341 (368)
+..++.. .++.+..+|..+.+..
T Consensus 310 g~~l~~g~~dg~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 310 GRLLFAGYSNGDCYVWDTLLAEMV 333 (380)
T ss_dssp SSEEEEECTTSCEEEEETTTCCEE
T ss_pred CCEEEEEECCCCEEEEECCCCceE
Confidence 8877776 6678999999887754
No 195
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=41.33 E-value=2.6e+02 Score=27.18 Aligned_cols=194 Identities=10% Similarity=0.095 Sum_probs=99.7
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
..+|.|...+. ....++.++|-......+-.. ......|+++|.. ++ +++... .....+++.++....-+.
T Consensus 358 ~~~~~ly~sD~-~~~~I~r~~~~g~~~~~v~~~---~~~~p~GlAvD~~-~~--~lY~tD--~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 358 PVEGYIYWTDD-EVRAIRRSFIDGSGSQFVVTA---QIAHPDGIAVDWV-AR--NLYWTD--TGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp TTTTEEEEEET-TTTEEEEEETTSCSCEEEECS---SCSCCCEEEEETT-TT--EEEEEE--TTTTEEEEEETTSCSCEE
T ss_pred cCCCeEEEEeC-CCCeEEEEEcCCCccEEEEEC---CCCCcCceEEecc-cC--cEEEEe--CCCCcEEEEeCCCCeEEE
Confidence 44566655553 344566666655433322111 1234568999973 22 344333 246688899887653322
Q ss_pred ccccCCCCCceeeeccceEEEe--CCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEE
Q 043460 182 RKVSVKPRRPVSFYVLQSVYSR--GGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYA 255 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~~--~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~ 255 (368)
... . .+..-.++.+. +|.|||... ...|..+++....-. .+- ...... ...|+.. +++||++
T Consensus 429 l~~---~----~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~-~l~-~~~l~~---P~GlalD~~~~~LY~a 496 (619)
T 3s94_A 429 LIS---E----DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV-VLV-NTSLGW---PNGLALDYDEGKIYWG 496 (619)
T ss_dssp EEC---T----TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEE-CSSCSC---EEEEEEETTTTEEEEE
T ss_pred EEE---C----CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE-EEE-eCCCCC---CeeeEEcccCCEEEEE
Confidence 221 1 11112245552 599999875 368999998765444 321 111111 2234443 6899998
Q ss_pred EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEE
Q 043460 256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRY 333 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~y 333 (368)
.....+ |+..+-++.+ .=+ +-...+. .|.++.-.++-||+. ....+.+.
T Consensus 497 D~~~~~--I~~~~~dG~~--------------~~~----~~~~~l~---------~P~glav~~~~ly~tD~~~~~I~~~ 547 (619)
T 3s94_A 497 DAKTDK--IEVMNTDGTG--------------RRV----LVEDKIP---------HIFGFTLLGDYVYWTDWQRRSIERV 547 (619)
T ss_dssp ETTTTE--EEEEESSSCC--------------CEE----EEECCCC---------SSCCEEEETTEEEEECTTSSCEEEE
T ss_pred ECCCCE--EEEEecCCCc--------------eEE----EeccCCC---------CcEEEEEECCEEEEeecCCCeEEEE
Confidence 776554 4444443220 111 1111111 112222234577877 56679999
Q ss_pred ECCCCeEEEecc
Q 043460 334 HLKTNKMELFST 345 (368)
Q Consensus 334 dl~t~~~~~v~~ 345 (368)
|..+.+.+.+..
T Consensus 548 ~k~~g~~~~~~~ 559 (619)
T 3s94_A 548 HKRSAEREVIID 559 (619)
T ss_dssp ESSSCCEEEEEC
T ss_pred EcCCCceEEEec
Confidence 998886655544
No 196
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=40.83 E-value=1.7e+02 Score=24.97 Aligned_cols=114 Identities=16% Similarity=0.091 Sum_probs=51.9
Q ss_pred CCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR 182 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~ 182 (368)
.+|-.++... ....+.|||..+++...+-... .+......+.+.+...+. .++. .. ....+.+++.+++.|...
T Consensus 23 ~~g~~lasgs-~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~-~l~s-~s--~D~~v~iWd~~~~~~~~~ 96 (316)
T 3bg1_A 23 YYGTRLATCS-SDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGN-ILAS-CS--YDRKVIIWREENGTWEKS 96 (316)
T ss_dssp GGGCEEEEEE-TTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSS-CEEE-EE--TTSCEEEECCSSSCCCEE
T ss_pred CCCCEEEEEe-CCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCC-EEEE-EE--CCCEEEEEECCCCcceEE
Confidence 3454444433 5667888988776532221111 011122344554311112 2222 22 345688999988877654
Q ss_pred cccCCCCCceeeeccceEEEe-C--CeEEEEEe-CCeEEEEEcCCC-eEE
Q 043460 183 KVSVKPRRPVSFYVLQSVYSR-G--GILYNLTY-RSTILRYNIEAL-SEA 227 (368)
Q Consensus 183 ~~~~~~~~p~~~~~~~~v~~~-~--G~lywl~~-~~~il~fD~~~~-~~~ 227 (368)
........+ -.++.+. + |.+...+. ++.|..+|+.++ .+.
T Consensus 97 ~~~~~h~~~-----V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 97 HEHAGHDSS-----VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp EEECCCSSC-----CCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred EEccCCCCc-----eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 321100000 0122220 1 33333333 667888888765 343
No 197
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=40.78 E-value=1.7e+02 Score=24.96 Aligned_cols=208 Identities=12% Similarity=0.106 Sum_probs=97.1
Q ss_pred cEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC-Cceecc
Q 043460 105 GLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK-TWITRK 183 (368)
Q Consensus 105 Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~-~W~~~~ 183 (368)
|-+++... ....+.|||..++++..+-... ........+.+.|... . ++++... ....+.+++.+++ .|....
T Consensus 71 ~~~l~s~s-~D~~v~iWd~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~-g-~~lasgs--~D~~i~lwd~~~~~~~~~~~ 144 (316)
T 3bg1_A 71 GNILASCS-YDRKVIIWREENGTWEKSHEHA-GHDSSVNSVCWAPHDY-G-LILACGS--SDGAISLLTYTGEGQWEVKK 144 (316)
T ss_dssp SSCEEEEE-TTSCEEEECCSSSCCCEEEEEC-CCSSCCCEEEECCTTT-C-SCEEEEC--SSSCEEEEEECSSSCEEECC
T ss_pred CCEEEEEE-CCCEEEEEECCCCcceEEEEcc-CCCCceEEEEECCCCC-C-cEEEEEc--CCCCEEEEecCCCCCcceee
Confidence 43444332 5678899999887654321111 0112344567776311 2 2222222 2445777777665 464322
Q ss_pred ccCCCCCc---eeeeccc--eEEE--------eCCeEEEEEe-CCeEEEEEcCC-CeEEEEEeCCCCCCCCCCceeEEee
Q 043460 184 VSVKPRRP---VSFYVLQ--SVYS--------RGGILYNLTY-RSTILRYNIEA-LSEAEIIEVPDKNNHPCDSEVIGLC 248 (368)
Q Consensus 184 ~~~~~~~p---~~~~~~~--~v~~--------~~G~lywl~~-~~~il~fD~~~-~~~~~~~~lP~~~~~~~~~~~l~~~ 248 (368)
.......+ ..+.... +..+ .+|.....+. ++.|..+|+.+ +.+.....+.... .. -..+...
T Consensus 145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~-~~--V~~v~~s 221 (316)
T 3bg1_A 145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS-DW--VRDVAWA 221 (316)
T ss_dssp BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS-SC--EEEEECC
T ss_pred eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC-Cc--eEEEEec
Confidence 11000000 0110000 0000 0022222222 56777888864 3454122222111 11 1122222
Q ss_pred -CC----eEEEEEECCCeEEEEEEccC-CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEE
Q 043460 249 -KG----ALNYASRNQSTLLIWQLDDH-RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDII 322 (368)
Q Consensus 249 -~G----~L~~~~~~~~~~~IW~l~~~-~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 322 (368)
++ .+.+....+.++.||.++.. .. .|.... +. ... ..+.-+++.+++..|
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~---------------~~~~~~-~~--~~~------~~v~~v~~sp~g~~l 277 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSN---------------TWSPKL-LH--KFN------DVVWHVSWSITANIL 277 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCC---------------CCBCCE-EE--ECS------SCEEEEEECTTTCCE
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCcccc---------------chhhhh-hh--cCC------CcEEEEEEcCCCCEE
Confidence 33 56666667889999998764 22 343211 11 111 234446677877766
Q ss_pred EEe-eCCeEEEEECC-CCeEEEecc
Q 043460 323 FLG-SCDMIYRYHLK-TNKMELFST 345 (368)
Q Consensus 323 ~~~-~~~~~~~ydl~-t~~~~~v~~ 345 (368)
... .+..+..++.. .++|+.+..
T Consensus 278 as~~~D~~v~lw~~~~~g~~~~~~~ 302 (316)
T 3bg1_A 278 AVSGGDNKVTLWKESVDGQWVCISD 302 (316)
T ss_dssp EEEESSSCEEEEEECTTSCEEEEEE
T ss_pred EEEcCCCeEEEEEECCCCcEEEeee
Confidence 655 56678888875 456777765
No 198
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=39.46 E-value=1.6e+02 Score=27.68 Aligned_cols=104 Identities=12% Similarity=0.183 Sum_probs=61.3
Q ss_pred CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeE---EeeCCeE-EEEEE-----CCCeEEEEEEccCCCCCCCCCCccCC
Q 043460 213 RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVI---GLCKGAL-NYASR-----NQSTLLIWQLDDHRHHSNSHGSNKAA 283 (368)
Q Consensus 213 ~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l---~~~~G~L-~~~~~-----~~~~~~IW~l~~~~~~~~~~~~~~~~ 283 (368)
...|.+||+.+.+....++++..... ...+ ...+|+. +++.. ...++.+|..++ +
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~---P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g----------- 290 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRM---ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--G----------- 290 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEE---EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--T-----------
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCc---cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--C-----------
Confidence 57899999998765546777532111 1111 1335654 44444 445666666654 5
Q ss_pred CCCCceEEEEEeeeccc--cccCc----c----ccceEEEEEecCCCEEEEe--eCCeEEEEECC
Q 043460 284 SGARSWILKHSICMDEW--GNKLH----V----FGLTRFYNIHPNSDIIFLG--SCDMIYRYHLK 336 (368)
Q Consensus 284 ~~~~~W~~~~~i~~~~~--~~~~~----~----~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~ 336 (368)
.|..+..|+.... ..... . .....-+.+.+++..+|+. ....|..||..
T Consensus 291 ----~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 291 ----KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp ----EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ----ceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 7999888763321 11000 0 0122335678899999998 56789999985
No 199
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=39.23 E-value=1.9e+02 Score=25.12 Aligned_cols=70 Identities=11% Similarity=0.178 Sum_probs=41.4
Q ss_pred eEEEe-CCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCC-CCceeEEee--CCeEEEEEE---CCCeEEEE
Q 043460 199 SVYSR-GGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHP-CDSEVIGLC--KGALNYASR---NQSTLLIW 265 (368)
Q Consensus 199 ~v~~~-~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~-~~~~~l~~~--~G~L~~~~~---~~~~~~IW 265 (368)
++.+. +|.|||+.. ...|++||+.+.+....+.+|...... ...-.++.. +|.+++... ....+.+|
T Consensus 71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 44441 488999874 368999999988843377887432111 111233343 467777765 44556666
Q ss_pred EEc
Q 043460 266 QLD 268 (368)
Q Consensus 266 ~l~ 268 (368)
-++
T Consensus 151 d~~ 153 (343)
T 2qe8_A 151 DLQ 153 (343)
T ss_dssp ETT
T ss_pred ECC
Confidence 554
No 200
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=39.16 E-value=2e+02 Score=25.18 Aligned_cols=197 Identities=10% Similarity=0.053 Sum_probs=97.1
Q ss_pred CCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR 182 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~ 182 (368)
.+|-+++... ....+.+||...+....+.... .....+.+.|. +.+ ++... ....+.+|+..++.-...
T Consensus 118 ~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~----~~v~~~~~~~~--~~~-l~~~~---~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 118 HDGNSIVTGV-ENGELRLWNKTGALLNVLNFHR----APIVSVKWNKD--GTH-IISMD---VENVTILWNVISGTVMQH 186 (425)
T ss_dssp TTSSEEEEEE-TTSCEEEEETTSCEEEEECCCC----SCEEEEEECTT--SSE-EEEEE---TTCCEEEEETTTTEEEEE
T ss_pred CCCCEEEEEe-CCCeEEEEeCCCCeeeeccCCC----ccEEEEEECCC--CCE-EEEEe---cCCeEEEEECCCCcEEEE
Confidence 3444333332 5668899993333333343221 23345666662 233 33222 245688888887754332
Q ss_pred cccCCCCC-ce--------eeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeE
Q 043460 183 KVSVKPRR-PV--------SFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGAL 252 (368)
Q Consensus 183 ~~~~~~~~-p~--------~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L 252 (368)
-....... .. ........+..++.+.....++.|..+|+.+.+....+..... . ...+... +|.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~---~--i~~~~~~~~~~~ 261 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHG---P--ISVLEFNDTNKL 261 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSS---C--EEEEEEETTTTE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCC---c--eEEEEECCCCCE
Confidence 21110000 00 0001112222155544444478899999998755412221111 1 1233333 6776
Q ss_pred EEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEE
Q 043460 253 NYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIY 331 (368)
Q Consensus 253 ~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~ 331 (368)
.++...+..+.||.+..... ... +... . ..+.-+.+.+++ .++.. .+..+.
T Consensus 262 l~~~~~d~~i~i~d~~~~~~---------------~~~----~~~~--~------~~i~~~~~~~~~-~l~~~~~d~~i~ 313 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNS---------------QNC----FYGH--S------QSIVSASWVGDD-KVISCSMDGSVR 313 (425)
T ss_dssp EEEEETTSCEEEECSSSBSC---------------SEE----ECCC--S------SCEEEEEEETTT-EEEEEETTSEEE
T ss_pred EEEEcCCCEEEEEECCCCcc---------------ceE----ecCC--C------ccEEEEEECCCC-EEEEEeCCCcEE
Confidence 67777778899998776322 111 1100 0 123345566666 44443 567888
Q ss_pred EEECCCCeEEEe
Q 043460 332 RYHLKTNKMELF 343 (368)
Q Consensus 332 ~ydl~t~~~~~v 343 (368)
.||+++.+....
T Consensus 314 i~d~~~~~~~~~ 325 (425)
T 1r5m_A 314 LWSLKQNTLLAL 325 (425)
T ss_dssp EEETTTTEEEEE
T ss_pred EEECCCCcEeEe
Confidence 999988775543
No 201
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=38.71 E-value=2e+02 Score=25.09 Aligned_cols=105 Identities=8% Similarity=0.085 Sum_probs=59.7
Q ss_pred CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceE
Q 043460 213 RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWI 290 (368)
Q Consensus 213 ~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~ 290 (368)
++.|..+|+.+.+....+...... .. -..+..+ ++.+.+....+..+.||.+.. + ...
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~h~-~~--v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~---------------~~~ 154 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMGPG-DA--ITGMKFNQFNTNQLFVSSIRGATTLRDFSG--S---------------VIQ 154 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCSTT-CB--EEEEEEETTEEEEEEEEETTTEEEEEETTS--C---------------EEE
T ss_pred CCeEEEEeCCCcccceeeecCCcC-Cc--eeEEEeCCCCCCEEEEEeCCCEEEEEECCC--C---------------ceE
Confidence 678899999987766234332111 11 2233333 456666777788999998874 2 222
Q ss_pred EEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEEecc
Q 043460 291 LKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 291 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~v~~ 345 (368)
..... .... ..+.-+.+.+++..++.. .+..+..+|++.+....+..
T Consensus 155 ~~~~~--~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 202 (383)
T 3ei3_B 155 VFAKT--DSWD------YWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKL 202 (383)
T ss_dssp EEECC--CCSS------CCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEEC
T ss_pred EEecc--CCCC------CCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEecc
Confidence 21111 1000 224445667777766665 55678888887666655543
No 202
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=38.44 E-value=2e+02 Score=25.05 Aligned_cols=209 Identities=9% Similarity=0.021 Sum_probs=99.5
Q ss_pred EEEEeecCCCeeEEEEcccCcc------ceecCCCCcCC-CCCCCeeEEc----CCCCCCeEEEEEEEeCCCcEEEEEeC
Q 043460 106 LILLGSSLSKHRYYVCNPLTKQ------CVAIPKAREDV-LASPPALAFH----PCDSSHYKIIRFLRARMDPEVDIFSS 174 (368)
Q Consensus 106 lll~~~~~~~~~~~v~NP~T~~------~~~lP~~~~~~-~~~~~~l~~d----~~~~~~ykvv~~~~~~~~~~~~vyss 174 (368)
-+++... ....+.+||..+++ ...+...+... ......+.+. | .+.+.++... ....+.+|+.
T Consensus 82 ~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~l~~~~---~dg~i~iwd~ 155 (397)
T 1sq9_A 82 CLVATTS-FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR--LLSHRLVATD---VKGTTYIWKF 155 (397)
T ss_dssp EEEEEEE-TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------CEEEEEEE---TTSCEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC--CCceEEEEEe---CCCcEEEEeC
Confidence 4444333 56789999998887 44443321000 1234456666 4 2344233333 2456777776
Q ss_pred CC------CC---ceeccccCC--CCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCC---CC
Q 043460 175 EN------KT---WITRKVSVK--PRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKN---NH 238 (368)
Q Consensus 175 ~~------~~---W~~~~~~~~--~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~---~~ 238 (368)
++ +. |........ .........-.++.+. +| +...+. ++.|..+|+.+.+....+...... ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 234 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence 65 32 211100000 0000000001123331 45 333333 788999999987665344441001 11
Q ss_pred CCCceeEEe-eCCeEEEEEECC---CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeecc-----ccccCccccc
Q 043460 239 PCDSEVIGL-CKGALNYASRNQ---STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDE-----WGNKLHVFGL 309 (368)
Q Consensus 239 ~~~~~~l~~-~~G~L~~~~~~~---~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~-----~~~~~~~~~~ 309 (368)
. ...+.. .+|.+.++...+ ..+.||-+.... .+..+.... ..........
T Consensus 235 ~--i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 235 S--IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-------------------RIGSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp C--EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-------------------EEEEECBC--------CCBSBSSC
T ss_pred c--cceEEECCCCCEEEEEecCCCCceEEEEECCCCc-------------------ccceeccCcccccccccccccCCc
Confidence 1 223333 367766666655 789999876532 122222100 0000000023
Q ss_pred eEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEE
Q 043460 310 TRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 310 ~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~ 342 (368)
+.-+.+.+++..++.. .+..+..||+++.+...
T Consensus 294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 327 (397)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE
Confidence 4446677777777766 56789999999887543
No 203
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=38.20 E-value=3.1e+02 Score=27.21 Aligned_cols=205 Identities=8% Similarity=0.031 Sum_probs=0.0
Q ss_pred EEEecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC
Q 043460 98 ALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK 177 (368)
Q Consensus 98 ~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~ 177 (368)
.+....+|.|.+. ....++.+|+.|++...++............+..|. +-++.... ...+..|+.+++
T Consensus 92 ~i~~d~~g~lWig---T~~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~----~g~lwi~t----~~gl~~~~~~~~ 160 (795)
T 4a2l_A 92 IVKTDSQGRVWIG---TRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEIS----PEQLLIST----PEGLIMFDIKES 160 (795)
T ss_dssp EEEECTTSCEEEE---ESSCEEEEETTTTEEEEECCEETTEECCCCEEEEEE----TTEEEEEE----TTEEEEEETTTT
T ss_pred EEEECCCCCEEEE---eCCchheeCCCCCeEEeccccccCCCceEEEEEECC----CCCEEEEE----CCceEEEECCCC
Q ss_pred CceeccccCCCCC-ceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEE
Q 043460 178 TWITRKVSVKPRR-PVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYAS 256 (368)
Q Consensus 178 ~W~~~~~~~~~~~-p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~ 256 (368)
.........+... ........ +|.+|.-+....+..||..+.++. .+......... ...+...+|.|.+..
T Consensus 161 ~~~~~~~~~~~~~~i~~i~~d~-----~g~lwigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~i--~~i~~d~~g~lwigt 232 (795)
T 4a2l_A 161 KFIDDSFSTAMHKTIASTLYRQ-----GDQIYIGTSTDGLYTYSITQKTFE-KVIPILGTKQI--QAILQQSPTRIWVAT 232 (795)
T ss_dssp EEECSSSCHHHHTCCEEEEEEE-----TTEEEEEESSSCEEEEETTTCCEE-ECC----CCCE--EEEEEEETTEEEEEE
T ss_pred EEEeccCCCCCCcceEEEEECC-----CCCEEEEECCCCEEEEeCCCCeEE-EecCCCCCCee--EEEEEcCCCCEEEEE
Q ss_pred ECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeEEEEECC
Q 043460 257 RNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLK 336 (368)
Q Consensus 257 ~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ydl~ 336 (368)
.... ++.++..++ ++.....-....-.... ..+.-+....++.+.+-... .++.||.+
T Consensus 233 ~~~G---l~~~~~~~~---------------~~~~~~~~~~~~~~l~~---~~i~~i~~d~~g~lWigt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 233 EGAG---LFLINPKTK---------------EIKNYLHSPSNPKSISS---NYIRSLAMDSQNRLWIGTFN-DLNIYHEG 290 (795)
T ss_dssp BSSC---EEEEETTTT---------------EEEEECCCTTCTTSCSC---SBEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred CCCC---eEEEeCCCC---------------eEEEeecCCCCccccCC---CeEEEEEEcCCCCEEEEeCC-hhheEcCC
Q ss_pred CCeEEEe
Q 043460 337 TNKMELF 343 (368)
Q Consensus 337 t~~~~~v 343 (368)
+++++.+
T Consensus 291 ~~~~~~~ 297 (795)
T 4a2l_A 291 TDSFASY 297 (795)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
No 204
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=38.03 E-value=3.1e+02 Score=27.15 Aligned_cols=137 Identities=9% Similarity=0.035 Sum_probs=67.2
Q ss_pred CcEEEEeecCCCeeEEEEcccCccceecCCCCcCC--CCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDV--LASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~--~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
+|.|.+.. . .-++++||.++++..++...... ......+..|+. +. +.+... ...+..|+.+++.++.
T Consensus 460 ~g~lwigt--~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~--g~---lWigt~--~~Gl~~~~~~~~~~~~ 529 (781)
T 3v9f_A 460 NKKIWIGT--H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSE--GR---FWIGTF--GGGVGIYTPDMQLVRK 529 (781)
T ss_dssp TSEEEEEE--T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTT--CC---EEEEES--SSCEEEECTTCCEEEE
T ss_pred CCCEEEEE--C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCC--CC---EEEEEc--CCCEEEEeCCCCeEEE
Confidence 45554443 2 45778888888877664332101 112233444541 22 222221 1346668888877766
Q ss_pred ccccCCCCCceeeeccceEEE-eCCeEEEEEeCCeE-EEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEE
Q 043460 182 RKVSVKPRRPVSFYVLQSVYS-RGGILYNLTYRSTI-LRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYAS 256 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~~~~i-l~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~ 256 (368)
... ....+.. .-.+++. .+|.+ |++....+ ..||+.++++. .+..............+...+|.|.+..
T Consensus 530 ~~~--~~~l~~~--~i~~i~~d~~g~l-Wi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 530 FNQ--YEGFCSN--TINQIYRSSKGQM-WLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp ECT--TTTCSCS--CEEEEEECTTSCE-EEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred ccC--CCCCCCC--eeEEEEECCCCCE-EEEECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEEc
Confidence 542 1111110 0113443 14555 66556778 99999999988 6543222111111223333467776664
No 205
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=37.79 E-value=2.5e+02 Score=27.99 Aligned_cols=117 Identities=9% Similarity=0.077 Sum_probs=64.3
Q ss_pred EEeCCeEEEEEe-----------CCeEEEEEcCC--------CeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCe
Q 043460 201 YSRGGILYNLTY-----------RSTILRYNIEA--------LSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQST 261 (368)
Q Consensus 201 ~~~~G~lywl~~-----------~~~il~fD~~~--------~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~ 261 (368)
+. +|.+|.... .+.|+++|+.+ .+|+ .+-.|.. ... -..+...++.|++....+..
T Consensus 297 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~--l~~~~~~~~~l~~~~~~~~~ 371 (711)
T 4hvt_A 297 SF-KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLK-ILFTPTA-NEV--FNFISTTKDRVFLATYDNVV 371 (711)
T ss_dssp EE-TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCE-EEECCCT-TEE--EEEEEECSSCEEEEEEETTE
T ss_pred eE-CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccce-EEECCCC-CCe--EEEEEEECCEEEEEEEECCE
Confidence 55 888888552 45699999876 3577 4333432 111 12344556788877776555
Q ss_pred EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-----eCCeEEEEECC
Q 043460 262 LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-----SCDMIYRYHLK 336 (368)
Q Consensus 262 ~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~ydl~ 336 (368)
-+|.+++-.++ .|.....+.++... .+.......+++.+++. ....++.||++
T Consensus 372 ~~l~~~~~~~g---------------~~~~~~~i~lp~~~-------~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 372 AKVVTFTLENE---------------QWTKPVVLKLPYQN-------AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEECEETT---------------EECCCEEECCCSTT-------CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEECCCC---------------ceEEEeccCCCCCe-------EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 55555543334 57432224433211 12333333444444443 45689999998
Q ss_pred CCeEEEecc
Q 043460 337 TNKMELFST 345 (368)
Q Consensus 337 t~~~~~v~~ 345 (368)
++.+.+..
T Consensus 430 -~~~~~l~~ 437 (711)
T 4hvt_A 430 -HELKIIRK 437 (711)
T ss_dssp -SCEEEEEC
T ss_pred -CcEEEEec
Confidence 66666554
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=37.44 E-value=3.1e+02 Score=26.91 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=95.6
Q ss_pred CCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 114 SKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
....+.|||..+++... +.... .....+.+.|. +.+ ++ ... ....+.+|+.+++ |...........+.
T Consensus 75 ~dg~i~vw~~~~~~~~~~~~~~~----~~v~~~~~s~~--~~~-l~-~~~--~dg~i~vw~~~~~-~~~~~~~~~~~~~v 143 (814)
T 3mkq_A 75 DDFRIRVFNYNTGEKVVDFEAHP----DYIRSIAVHPT--KPY-VL-SGS--DDLTVKLWNWENN-WALEQTFEGHEHFV 143 (814)
T ss_dssp TTSEEEEEETTTCCEEEEEECCS----SCEEEEEECSS--SSE-EE-EEE--TTSEEEEEEGGGT-SEEEEEEECCSSCE
T ss_pred CCCeEEEEECCCCcEEEEEecCC----CCEEEEEEeCC--CCE-EE-EEc--CCCEEEEEECCCC-ceEEEEEcCCCCcE
Confidence 56789999998887654 22111 12335566662 233 33 222 3567888888765 22111100000000
Q ss_pred eeeccceEEEe--CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee---CCeEEEEEECCCeEEEEE
Q 043460 193 SFYVLQSVYSR--GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC---KGALNYASRNQSTLLIWQ 266 (368)
Q Consensus 193 ~~~~~~~v~~~--~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~---~G~L~~~~~~~~~~~IW~ 266 (368)
.++.+. +|.....+. ++.|..+|+.+.+....+..+.... ...+... +|.+.++...+..+.+|.
T Consensus 144 -----~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~~~~~dg~i~~~d 214 (814)
T 3mkq_A 144 -----MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG----VNYVDYYPLPDKPYMITASDDLTIKIWD 214 (814)
T ss_dssp -----EEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTC----CCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred -----EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCC----EEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 122221 233333333 6789999997765441333222111 1123332 677777777788999997
Q ss_pred EccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEE
Q 043460 267 LDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~ 342 (368)
+... ..+..+.... ..+.-+.+.+++..++.. .++.+..||+.+.+...
T Consensus 215 ~~~~-------------------~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 215 YQTK-------------------SCVATLEGHM--------SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp TTTT-------------------EEEEEEECCS--------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCCC-------------------cEEEEEcCCC--------CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 7542 2223332110 224446677777766666 45778899998866543
No 207
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=36.79 E-value=2.4e+02 Score=25.43 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=76.0
Q ss_pred CeeEEEE--cccCccceecCCC--Cc-CCCCCCCeeEE--cCCCCCCeEEEEEEEeCCCcEEEEEeC---CCCCceeccc
Q 043460 115 KHRYYVC--NPLTKQCVAIPKA--RE-DVLASPPALAF--HPCDSSHYKIIRFLRARMDPEVDIFSS---ENKTWITRKV 184 (368)
Q Consensus 115 ~~~~~v~--NP~T~~~~~lP~~--~~-~~~~~~~~l~~--d~~~~~~ykvv~~~~~~~~~~~~vyss---~~~~W~~~~~ 184 (368)
..++.|+ ||.++++..+... |. .......|+++ ++. ++.+.++..... -.++.|.. ..+.......
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~-~g~~yafV~~k~---G~~~q~~l~~~~~g~~~~~lV 173 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQK-TGKYYAMVTGKE---GEFEQYELKADKNGYISGKKV 173 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTT-TCCEEEEEECSS---SEEEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCC-CCcEEEEEECCC---CeEEEEEEEeCCCCcccceEE
Confidence 4667666 9999998888543 21 12245667776 773 455666655543 35555544 5554433221
Q ss_pred cCCCCCceeeec-cceEEEe--CCeEEEEEeCCeEEEEEcCCCe---EEEEE-eCCCCCCCCCCceeEEe---eC--CeE
Q 043460 185 SVKPRRPVSFYV-LQSVYSR--GGILYNLTYRSTILRYNIEALS---EAEII-EVPDKNNHPCDSEVIGL---CK--GAL 252 (368)
Q Consensus 185 ~~~~~~p~~~~~-~~~v~~~--~G~lywl~~~~~il~fD~~~~~---~~~~~-~lP~~~~~~~~~~~l~~---~~--G~L 252 (368)
. .+.... -.++.+. .|.||.--+...|.+||.+-+. -+ .+ ..+..... .+..-|+. .+ |.|
T Consensus 174 R-----~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~-~v~~~~~g~l~-aDvEGLai~~~~~g~gyL 246 (355)
T 3amr_A 174 R-----AFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGT-VIDRADGRHLT-RDIEGLTIYYAADGKGYL 246 (355)
T ss_dssp E-----EEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCE-EEEEBSSSSBC-SCEEEEEEEECGGGCEEE
T ss_pred E-----EecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCce-EEEEecCCccc-cCcceEEEEecCCCCEEE
Confidence 0 011111 1134441 3889988877889999955321 23 22 22221111 01223332 22 346
Q ss_pred EEEEECCCeEEEEEEcc
Q 043460 253 NYASRNQSTLLIWQLDD 269 (368)
Q Consensus 253 ~~~~~~~~~~~IW~l~~ 269 (368)
.+.+.....+.++..+.
T Consensus 247 ivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 247 MASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEEGGGTEEEEEESST
T ss_pred EEEcCCCCEEEEEECCC
Confidence 66665677899987763
No 208
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=36.72 E-value=2.9e+02 Score=26.41 Aligned_cols=213 Identities=8% Similarity=-0.032 Sum_probs=103.2
Q ss_pred CcE-EEEeecCCCeeEEEEccc--C-ccceecCCCCcC-CCCCCCeeEEcCCCCCCeEEEEEEEe-------CCCcEEEE
Q 043460 104 NGL-ILLGSSLSKHRYYVCNPL--T-KQCVAIPKARED-VLASPPALAFHPCDSSHYKIIRFLRA-------RMDPEVDI 171 (368)
Q Consensus 104 ~Gl-ll~~~~~~~~~~~v~NP~--T-~~~~~lP~~~~~-~~~~~~~l~~d~~~~~~ykvv~~~~~-------~~~~~~~v 171 (368)
+.. |.+... ...+++++|.. + ++.+.|...+.. .......+.+.|. +.+ |+..... .....+.+
T Consensus 90 g~~~la~~~~-~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD--g~~-l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 90 GGPLLVFTHF-GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE--RGE-VWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp SSCEEEEEBT-TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT--TTE-EEEEEEEECSSSTTCEEEEEEE
T ss_pred CCeEEEEEEC-CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC--CCE-EEEEEecccCCCCCCceeEEEE
Confidence 344 444432 35679999987 4 777777553210 1112234556662 333 3333222 12246777
Q ss_pred EeCCC------CCceeccccCCCCCceeeeccceEEEeCCe-EEEEEeC--------CeEEEEEcC-CCeEEEEEeCCCC
Q 043460 172 FSSEN------KTWITRKVSVKPRRPVSFYVLQSVYSRGGI-LYNLTYR--------STILRYNIE-ALSEAEIIEVPDK 235 (368)
Q Consensus 172 yss~~------~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~-lywl~~~--------~~il~fD~~-~~~~~~~~~lP~~ 235 (368)
++..+ +.-+.... .. ......-...- +|. |++.... ..|..+|+. +++......+...
T Consensus 166 ~~~~~~~~~~~~~~~~l~~---~~--~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSD---DA--HRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EETTSTTTTCGGGSEESSC---SC--SSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred EECCCCccccCCceeEEEe---cC--CCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 78777 55443320 11 01111112333 553 6666542 479999998 5622111122111
Q ss_pred CCCCCCceeEEe-eCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEE
Q 043460 236 NNHPCDSEVIGL-CKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYN 314 (368)
Q Consensus 236 ~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~ 314 (368)
.... ...+.- .+|+|++....+....||.++..++ ++..+............. ....-+.
T Consensus 240 ~~~~--~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~---------------~~~~l~~~~~~~~~p~w~--~~~~~~~ 300 (662)
T 3azo_A 240 PEEA--IAQAEWAPDGSLIVATDRTGWWNLHRVDPATG---------------AATQLCRREEEFAGPLWT--PGMRWFA 300 (662)
T ss_dssp TTBC--EEEEEECTTSCEEEEECTTSSCEEEEECTTTC---------------CEEESSCCSSBSSCCCCS--TTCCSEE
T ss_pred CCce--EcceEECCCCeEEEEECCCCCeEEEEEECCCC---------------ceeecccccccccCcccc--ccCceEe
Confidence 1111 123333 3788776665555678999886444 555433221110000000 0011245
Q ss_pred EecCCCEEEEe--eCCeEEEEECCCCeEEEecc
Q 043460 315 IHPNSDIIFLG--SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 315 ~~~~~~~v~~~--~~~~~~~ydl~t~~~~~v~~ 345 (368)
+.+++.+++.. ...+++.+|+++++++.+..
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 333 (662)
T 3azo_A 301 PLANGLIAVVHGKGAAVLGILDPESGELVDAAG 333 (662)
T ss_dssp ECTTSCEEEEEBSSSCEEEEEETTTTEEEECCS
T ss_pred EeCCCEEEEEEEcCccEEEEEECCCCcEEEecC
Confidence 56666766665 24568888998888877754
No 209
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=36.27 E-value=2e+02 Score=24.32 Aligned_cols=148 Identities=10% Similarity=0.075 Sum_probs=64.7
Q ss_pred cEEEEeecCCCeeEEEEcccCcccee-cCCCCcC-CCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460 105 GLILLGSSLSKHRYYVCNPLTKQCVA-IPKARED-VLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR 182 (368)
Q Consensus 105 Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~-~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~ 182 (368)
|-+++... ....+.|||..+++... .|..... .......+.+.|. +.+- + ... ....+.+++...+.....
T Consensus 51 ~~~l~S~s-~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d--g~~l-~-s~~--~d~~i~~~~~~~~~~~~~ 123 (340)
T 4aow_A 51 PDMILSAS-RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD--GQFA-L-SGS--WDGTLRLWDLTTGTTTRR 123 (340)
T ss_dssp TTEEEEEE-TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT--SSEE-E-EEE--TTSEEEEEETTTTEEEEE
T ss_pred CCEEEEEc-CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC--CCEE-E-EEc--ccccceEEeecccceeee
Confidence 43333332 56678899987655332 1211111 1122344566652 3332 2 222 234566777666554333
Q ss_pred cccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee---CCeEEEEEEC
Q 043460 183 KVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC---KGALNYASRN 258 (368)
Q Consensus 183 ~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~---~G~L~~~~~~ 258 (368)
....... .. .....- ++.....+. ++.+..+|.....-. .......... ...+... .+.+.+....
T Consensus 124 ~~~~~~~--~~---~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~-~~~~~~~~~~---v~~~~~~~~~~~~~~~s~~~ 193 (340)
T 4aow_A 124 FVGHTKD--VL---SVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKY-TVQDESHSEW---VSCVRFSPNSSNPIIVSCGW 193 (340)
T ss_dssp EECCSSC--EE---EEEECT-TSSCEEEEETTSCEEEECTTSCEEE-EECSSSCSSC---EEEEEECSCSSSCEEEEEET
T ss_pred ecCCCCc--ee---EEEEee-cCccceeecCCCeEEEEEeCCCceE-EEEeccccCc---ccceEEccCCCCcEEEEEcC
Confidence 2111110 00 001111 222222222 667778888766554 3333221111 1122211 2344555556
Q ss_pred CCeEEEEEEcc
Q 043460 259 QSTLLIWQLDD 269 (368)
Q Consensus 259 ~~~~~IW~l~~ 269 (368)
+..+.+|-+..
T Consensus 194 d~~i~i~d~~~ 204 (340)
T 4aow_A 194 DKLVKVWNLAN 204 (340)
T ss_dssp TSCEEEEETTT
T ss_pred CCEEEEEECCC
Confidence 77889997655
No 210
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=36.01 E-value=2e+02 Score=24.43 Aligned_cols=195 Identities=7% Similarity=-0.005 Sum_probs=96.3
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....+.+||..+++...+.... .....+.+.+. .+.+.+.... ....+.+|+.+++.-...-.. ..
T Consensus 106 ~dg~v~iwd~~~~~~~~~~~~~----~~v~~~~~~~~--~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~--~~---- 171 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQIAQHD----APVKTIHWIKA--PNYSCVMTGS--WDKTLKFWDTRSSNPMMVLQL--PE---- 171 (368)
T ss_dssp TTSEEEEEETTTTEEEEEEECS----SCEEEEEEEEC--SSCEEEEEEE--TTSEEEEECSSCSSCSEEEEC--SS----
T ss_pred CCCcEEEEEcCCCCceeecccc----CceEEEEEEeC--CCCCEEEEcc--CCCcEEEEECCCCcEEEEEec--CC----
Confidence 5678889999888876653322 12334555221 1233333333 246788898887642211100 00
Q ss_pred eeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CC----eEEEEEECCCeEEEEEEc
Q 043460 194 FYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KG----ALNYASRNQSTLLIWQLD 268 (368)
Q Consensus 194 ~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G----~L~~~~~~~~~~~IW~l~ 268 (368)
...++......++....++.+..+|..+..-. ........... ...+... ++ ...++...+..+.||.++
T Consensus 172 --~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 172 --RCYCADVIYPMAVVATAERGLIVYQLENQPSE-FRRIESPLKHQ--HRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp --CEEEEEEETTEEEEEEGGGCEEEEECSSSCEE-EEECCCSCSSC--EEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred --CceEEEecCCeeEEEeCCCcEEEEEeccccch-hhhccccccCC--CceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence 01122221444444444788899999887554 33332221111 1122211 11 224555577889999987
Q ss_pred cCCCCCCCCCCccCCCCCCceEEEEEeeeccc----cccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEEe
Q 043460 269 DHRHHSNSHGSNKAASGARSWILKHSICMDEW----GNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMELF 343 (368)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~v 343 (368)
.... -.....+....- .........+.-+.+.+++..++.. .+..+..||+++.+....
T Consensus 247 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 247 PPNP----------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp CSCH----------------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCc----------------cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 6421 011111110000 0000000124445677777766665 567799999998775443
No 211
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=35.35 E-value=2.3e+02 Score=24.82 Aligned_cols=152 Identities=11% Similarity=0.063 Sum_probs=76.4
Q ss_pred cEEEEeecCCCeeEEEEcccCccceec-CCCCc--CCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 105 GLILLGSSLSKHRYYVCNPLTKQCVAI-PKARE--DVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 105 Glll~~~~~~~~~~~v~NP~T~~~~~l-P~~~~--~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
+-+++... ....+.+||..+++.... ..... ........+.+.|. +...++..........+.+|+.+++.-..
T Consensus 178 ~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~~~~i~~~d~~~~~~~~ 254 (416)
T 2pm9_A 178 AHVFASAG-SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK--NSTRVATATGSDNDPSILIWDLRNANTPL 254 (416)
T ss_dssp TTEEEEES-SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS--CTTEEEEEECCSSSCCCCEEETTSTTSCS
T ss_pred CcEEEEEc-CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC--CCCEEEEEECCCCCceEEEEeCCCCCCCc
Confidence 44444332 567899999988765442 22110 00223445677762 33344443322112278888888754111
Q ss_pred ccccCC-CCCceeeeccceEEEe--CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCC-eEEEE
Q 043460 182 RKVSVK-PRRPVSFYVLQSVYSR--GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKG-ALNYA 255 (368)
Q Consensus 182 ~~~~~~-~~~p~~~~~~~~v~~~--~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G-~L~~~ 255 (368)
.. .. .. . ..-.++.+. +|.+...+. ++.|..+|+.+.+....+...... ...+.. .+| .+.+.
T Consensus 255 ~~--~~~~~---~-~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 255 QT--LNQGH---Q-KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW-----CFKTKFAPEAPDLFAC 323 (416)
T ss_dssp BC--CCSCC---S-SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC-----CCCEEECTTCTTEEEE
T ss_pred EE--eecCc---c-CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc-----eEEEEECCCCCCEEEE
Confidence 11 00 00 0 000123321 344444443 788999999887554233332211 112333 355 66666
Q ss_pred EECCCeEEEEEEccC
Q 043460 256 SRNQSTLLIWQLDDH 270 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~ 270 (368)
...+..+.||.+...
T Consensus 324 ~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 324 ASFDNKIEVQTLQNL 338 (416)
T ss_dssp CCSSSEEEEEESCCC
T ss_pred EecCCcEEEEEccCC
Confidence 667789999998875
No 212
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=35.08 E-value=2.4e+02 Score=24.90 Aligned_cols=143 Identities=11% Similarity=0.040 Sum_probs=70.8
Q ss_pred CCeeEEEEcccCc-cce-ecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCc
Q 043460 114 SKHRYYVCNPLTK-QCV-AIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRP 191 (368)
Q Consensus 114 ~~~~~~v~NP~T~-~~~-~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p 191 (368)
....+.|||..+. +.. .++... .+......+.+.|. .+. .++. .. ....+.+|+..++........ +.
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~-~~~-~l~s-~s--~dg~v~vw~~~~~~~~~~~~~--~~-- 124 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPH-NDN-VIAS-GS--EDCTVMVWEIPDGGLVLPLRE--PV-- 124 (402)
T ss_dssp SSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTT-CTT-EEEE-EE--TTSEEEEEECCTTCCSSCBCS--CS--
T ss_pred CCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCC-CCC-EEEE-Ee--CCCeEEEEEccCCCCccccCC--ce--
Confidence 4567788886432 221 111111 12223445677762 222 2322 22 356799999988754321100 00
Q ss_pred eeeec--c--ceEEEe-CC-eEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEEEECCCeEE
Q 043460 192 VSFYV--L--QSVYSR-GG-ILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYASRNQSTLL 263 (368)
Q Consensus 192 ~~~~~--~--~~v~~~-~G-~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~ 263 (368)
..+.. . .++.+. +| .+...+. ++.|..+|+.+.+....+..... ... ...+... +|.+.+....+..+.
T Consensus 125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~--v~~~~~~~~~~~l~~~~~d~~i~ 201 (402)
T 2aq5_A 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH-PDT--IYSVDWSRDGALICTSCRDKRVR 201 (402)
T ss_dssp EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC-CSC--EEEEEECTTSSCEEEEETTSEEE
T ss_pred EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC-CCc--eEEEEECCCCCEEEEEecCCcEE
Confidence 11111 1 123331 33 3444444 77899999998876523321111 111 1233333 677777777778999
Q ss_pred EEEEcc
Q 043460 264 IWQLDD 269 (368)
Q Consensus 264 IW~l~~ 269 (368)
||-+..
T Consensus 202 iwd~~~ 207 (402)
T 2aq5_A 202 VIEPRK 207 (402)
T ss_dssp EEETTT
T ss_pred EEeCCC
Confidence 998765
No 213
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=34.75 E-value=2.3e+02 Score=24.66 Aligned_cols=193 Identities=14% Similarity=0.096 Sum_probs=97.8
Q ss_pred CCcEEEEeecCCCeeEEEEcccCccce-ecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCV-AIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT 181 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~-~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~ 181 (368)
.+|.|...+. ....+..+++.++... .+.. .......++++|+. .+ +++.... ....+++++.+...-+.
T Consensus 45 ~~~~lyw~D~-~~~~I~r~~~~g~~~~~~~~~---~~l~~p~glavd~~-~g--~ly~~d~--~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 45 SHGLIYWSDV-SEEAIKRTEFNKTESVQNVVV---SGLLSPDGLACDWL-GE--KLYWTDS--ETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp GGTEEEEEET-TTTEEEEEETTSSSCCCEEEE---ECCSCCCEEEEETT-TT--EEEEEET--TTTEEEEEETTSCSCEE
T ss_pred CCCEEEEEEC-CCCcEEEEEccCCCceEEEEc---CCCCCccEEEEEcC-CC--eEEEEEC--CCCEEEEEECCCCcEEE
Confidence 3555555543 4456677777665321 1110 01224567888873 22 2333322 34578888876543222
Q ss_pred ccccCCCCCceeeeccceEEEe--CCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEE
Q 043460 182 RKVSVKPRRPVSFYVLQSVYSR--GGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYA 255 (368)
Q Consensus 182 ~~~~~~~~~p~~~~~~~~v~~~--~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~ 255 (368)
... .. .. .-.++.+. +|.+||... ...|.++|+....-+ .+- ...... .-.|+.. +|+||++
T Consensus 116 l~~---~~--~~--~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~-~~~l~~---Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 116 LFW---QE--LD--QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-III-NSEIYW---PNGLTLDYEEQKLYWA 183 (318)
T ss_dssp EEC---SS--CS--SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-EEE-CSSCSC---EEEEEEETTTTEEEEE
T ss_pred EEe---CC--CC--CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-EEE-ECCCCC---ccEEEEeccCCEEEEE
Confidence 211 00 11 11234441 589999874 578999999865444 321 111111 2244444 6889988
Q ss_pred EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEE
Q 043460 256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRY 333 (368)
Q Consensus 256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~y 333 (368)
...... |++.+-++. .-..+. . ..+ -.|.++.-.++-+|+. ...++.++
T Consensus 184 D~~~~~--I~~~d~dG~---------------~~~~~~--~-~~~---------~~P~glav~~~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 184 DAKLNF--IHKSNLDGT---------------NRQAVV--K-GSL---------PHPFALTLFEDILYWTDWSTHSILAC 234 (318)
T ss_dssp ETTTTE--EEEEETTSC---------------SCEEEE--C-SCC---------SCEEEEEEETTEEEEEETTTTEEEEE
T ss_pred ECCCCE--EEEEcCCCC---------------ceEEEe--c-CCC---------CCceEEEEeCCEEEEEecCCCeEEEE
Confidence 765544 555544322 111111 1 111 1344444345667776 56789999
Q ss_pred ECCCCe-EEEecc
Q 043460 334 HLKTNK-MELFST 345 (368)
Q Consensus 334 dl~t~~-~~~v~~ 345 (368)
|..+.+ .+.+..
T Consensus 235 ~~~~G~~~~~i~~ 247 (318)
T 3sov_A 235 NKYTGEGLREIHS 247 (318)
T ss_dssp ETTTCCSCEEEEC
T ss_pred ECCCCCceEEEeC
Confidence 996655 344443
No 214
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=34.69 E-value=2e+02 Score=24.09 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=56.7
Q ss_pred CCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 114 SKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
....+.++|+.|++... ++..... .....+.++|. +.+-++. .. ....+.+++..++.-...-. .......
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~d--g~~l~v~-~~--~~~~v~~~d~~~~~~~~~~~-~~~~~~~ 80 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADAG--PTPMVPMVAPG--GRIAYAT-VN--KSESLVKIDLVTGETLGRID-LSTPEER 80 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCT--TCCCCEEECTT--SSEEEEE-ET--TTTEEEEEETTTCCEEEEEE-CCBTTEE
T ss_pred CCCeEEEEECCCCcEEEEEEcCCCC--CCccceEEcCC--CCEEEEE-eC--CCCeEEEEECCCCCeEeeEE-cCCcccc
Confidence 56788999999887654 2211100 01345677772 3333332 21 34578899988876432111 0100000
Q ss_pred eeeccc-eEEEeCC-eEEEEE------------eCCeEEEEEcCCCeEEEEEeCC
Q 043460 193 SFYVLQ-SVYSRGG-ILYNLT------------YRSTILRYNIEALSEAEIIEVP 233 (368)
Q Consensus 193 ~~~~~~-~v~~~~G-~lywl~------------~~~~il~fD~~~~~~~~~~~lP 233 (368)
...... .+.- +| .+|... ....|.++|+.+.+....+..+
T Consensus 81 ~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 134 (337)
T 1pby_B 81 VKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP 134 (337)
T ss_dssp EECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC
T ss_pred cccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC
Confidence 000111 1222 46 455553 2488999999988765355554
No 215
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=34.67 E-value=2.6e+02 Score=25.23 Aligned_cols=196 Identities=9% Similarity=-0.017 Sum_probs=96.6
Q ss_pred CCeeEEEEcccCccceecCCCC-cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAR-EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~-~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
....+++|+..+++....+... .........+.+.|. ...-+.+.... ....+.+|+..++.-...- .... .
T Consensus 169 ~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~--~~~h--~ 241 (450)
T 2vdu_B 169 KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKD-SDGHQFIITSD--RDEHIKISHYPQCFIVDKW--LFGH--K 241 (450)
T ss_dssp TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEEC-TTSCEEEEEEE--TTSCEEEEEESCTTCEEEE--CCCC--S
T ss_pred CCCcEEEEecCCcccccccceeeecccCceEEEEEcCC-CCCCcEEEEEc--CCCcEEEEECCCCceeeee--ecCC--C
Confidence 4556777777666544211111 111122334556652 01123333333 2456788887766532221 0000 0
Q ss_pred eeeccceEEEeCCe-EEEEEeCCeEEEEEcCCCeEEEEEeCCCCC--------------------CCCCCceeEE-eeCC
Q 043460 193 SFYVLQSVYSRGGI-LYNLTYRSTILRYNIEALSEAEIIEVPDKN--------------------NHPCDSEVIG-LCKG 250 (368)
Q Consensus 193 ~~~~~~~v~~~~G~-lywl~~~~~il~fD~~~~~~~~~~~lP~~~--------------------~~~~~~~~l~-~~~G 250 (368)
. .-.++.+.+|. ++.-..++.|..+|+.+.+....+...... ........+. ..+|
T Consensus 242 ~--~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 242 H--FVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp S--CEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred C--ceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 0 00122221344 433333789999999988754245432100 0000011222 2357
Q ss_pred eEEEEEE-CCCeEEEEEEc-cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC-
Q 043460 251 ALNYASR-NQSTLLIWQLD-DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC- 327 (368)
Q Consensus 251 ~L~~~~~-~~~~~~IW~l~-~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 327 (368)
+..++.. .+..+.||.+. ..+. .+..+..+... . .+.-+++.+ +++++....
T Consensus 320 ~~l~~~~~~d~~i~iw~~~~~~~~---------------~l~~~~~~~~~--~-------~v~~~~~~~-~~~~v~~~~~ 374 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEMSEKQKG---------------DLALKQIITFP--Y-------NVISLSAHN-DEFQVTLDNK 374 (450)
T ss_dssp SEEEEEETTCSEEEEEEECSSSTT---------------CEEEEEEEECS--S-------CEEEEEEET-TEEEEEECCT
T ss_pred CEEEEEECCCCeEEEEEeccCCCC---------------ceeeccEeccC--C-------ceEEEEecC-CcEEEEEecc
Confidence 7666666 77899999993 3233 57777766643 1 123355666 344444322
Q ss_pred ---------CeEEEEECCCCeEEEe
Q 043460 328 ---------DMIYRYHLKTNKMELF 343 (368)
Q Consensus 328 ---------~~~~~ydl~t~~~~~v 343 (368)
-.+|.++.++++++..
T Consensus 375 ~~~~~~~~~i~v~~~~~~~~~~~~~ 399 (450)
T 2vdu_B 375 ESSGVQKNFAKFIEYNLNENSFVVN 399 (450)
T ss_dssp TCCSSCCCSEEEEEEETTTTEEEEC
T ss_pred cCCCCCCcceEEEEEEcCCCeEEEc
Confidence 1889999999988643
No 216
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=34.63 E-value=2.3e+02 Score=24.71 Aligned_cols=69 Identities=10% Similarity=0.145 Sum_probs=41.7
Q ss_pred EEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEE
Q 043460 254 YASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYR 332 (368)
Q Consensus 254 ~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ 332 (368)
+....+..++||-++..+. ......... ... ..+.-+++.+++..++.. .+..+..
T Consensus 97 ~~~s~dg~v~lWd~~~~~~---------------~~~~~~~~~----~H~----~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 97 LVASDSGAVELWELDENET---------------LIVSKFCKY----EHD----DIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp EEEETTSEEEEEEECTTSS---------------CEEEEEEEE----CCS----SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEECCCEEEEEeccCCCc---------------eeEeecccc----CCC----CCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3445677899999887533 233222221 100 234556777888776665 5567889
Q ss_pred EECCCCeEEEecc
Q 043460 333 YHLKTNKMELFST 345 (368)
Q Consensus 333 ydl~t~~~~~v~~ 345 (368)
+|+++++......
T Consensus 154 wd~~~~~~~~~~~ 166 (344)
T 4gqb_B 154 WDLAQQVVLSSYR 166 (344)
T ss_dssp EETTTTEEEEEEC
T ss_pred EECCCCcEEEEEc
Confidence 9999888654433
No 217
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=34.39 E-value=2.1e+02 Score=24.08 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=90.9
Q ss_pred CCcEEEEeecCCCeeEEEEcccCccce---ecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTKQCV---AIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW 179 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~~~~---~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W 179 (368)
.+|-.++... ....+.|||..++... .+... ......+.+.+...+. +++... ....+.+++.+++.|
T Consensus 19 ~~g~~las~s-~D~~v~iw~~~~~~~~~~~~l~gH----~~~V~~v~~s~~~~g~--~l~s~s--~D~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 19 YYGKRMATCS-SDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGT--ILASCS--YDGKVMIWKEENGRW 89 (297)
T ss_dssp TTSSEEEEEE-TTSCEEEEEBCSSCBCCCEEECCC----SSCEEEEEECCGGGCS--EEEEEE--TTTEEEEEEBSSSCB
T ss_pred CCCCEEEEEe-CCCEEEEEecCCCCcEEEEEEccc----cCCeEEEEecCCCcCC--EEEEEc--CCCEEEEEEcCCCce
Confidence 3444444333 5667888887653222 22211 1122344554311122 233222 356789999988887
Q ss_pred eeccccCCCCCceeeeccceEEEe-C--CeEEEEEe-CCeEEEEEcCCCe-EEEEEeCCCCCCCCCCceeEEe-------
Q 043460 180 ITRKVSVKPRRPVSFYVLQSVYSR-G--GILYNLTY-RSTILRYNIEALS-EAEIIEVPDKNNHPCDSEVIGL------- 247 (368)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~~v~~~-~--G~lywl~~-~~~il~fD~~~~~-~~~~~~lP~~~~~~~~~~~l~~------- 247 (368)
...........+. .++.+. + |.+...+. ++.|..+|+.+.. .. ...+...... -..+..
T Consensus 90 ~~~~~~~~h~~~v-----~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-~~~~~~h~~~---v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 90 SQIAVHAVHSASV-----NSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIG---VNSASWAPATIEE 160 (297)
T ss_dssp CCCEEECCCSSCE-----EEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-CEEEECCSSC---EEEEEECCCC---
T ss_pred EEEEEeecCCCce-----eEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-eeeeecccCc---cceEeecCCcccc
Confidence 6543211000000 122220 1 43333333 6778888887652 21 1111100000 001111
Q ss_pred -------eCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCC-
Q 043460 248 -------CKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNS- 319 (368)
Q Consensus 248 -------~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 319 (368)
.++++.+....+..+.||.+..... .|....++.-+. ..+.-+.+.+++
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~---------------~~~~~~~l~~H~--------~~V~~v~~sp~~~ 217 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ---------------TYVLESTLEGHS--------DWVRDVAWSPTVL 217 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTT---------------EEEEEEEECCCS--------SCEEEEEECCCCS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCc---------------eEEEEEEecCCC--------CceEEEEECCCCC
Confidence 1245666666788999999887544 576666554111 223445566653
Q ss_pred --CEEEEe-eCCeEEEEECCCC
Q 043460 320 --DIIFLG-SCDMIYRYHLKTN 338 (368)
Q Consensus 320 --~~v~~~-~~~~~~~ydl~t~ 338 (368)
..+.-. .+..+..+|+++.
T Consensus 218 ~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 218 LRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp SSEEEEEEETTSCEEEEEESST
T ss_pred CceEEEEEECCCcEEEEEeCCC
Confidence 333222 4566777777663
No 218
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=34.02 E-value=2.5e+02 Score=24.94 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=39.6
Q ss_pred CeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEEEEcc
Q 043460 205 GILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 205 G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
|.+...+. ++.|..+|+.+.+....+..+..... ...+.. .+|.+.+....+..+.||-+..
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~---v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA---VSSICIDEECCVLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC---EEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc---eEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence 55444444 78999999988766535554422111 123333 3678877788888999998875
No 219
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=33.75 E-value=2.2e+02 Score=24.23 Aligned_cols=193 Identities=10% Similarity=0.083 Sum_probs=97.2
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
+.+|-.++... ....+.|||..|++... +... ......+.+.|. +. .++. .. ....+.+++.+...-.
T Consensus 74 s~dg~~l~s~s-~D~~v~~wd~~~~~~~~~~~~h----~~~v~~~~~~~~--~~-~l~s-~s--~D~~i~vwd~~~~~~~ 142 (319)
T 3frx_A 74 TADGAYALSAS-WDKTLRLWDVATGETYQRFVGH----KSDVMSVDIDKK--AS-MIIS-GS--RDKTIKVWTIKGQCLA 142 (319)
T ss_dssp CTTSSEEEEEE-TTSEEEEEETTTTEEEEEEECC----SSCEEEEEECTT--SC-EEEE-EE--TTSCEEEEETTSCEEE
T ss_pred CCCCCEEEEEe-CCCEEEEEECCCCCeeEEEccC----CCcEEEEEEcCC--CC-EEEE-Ee--CCCeEEEEECCCCeEE
Confidence 44555554443 67789999999887543 2211 112334556552 22 2222 22 2456777777543211
Q ss_pred eccccCCCC-CceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEE
Q 043460 181 TRKVSVKPR-RPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASR 257 (368)
Q Consensus 181 ~~~~~~~~~-~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~ 257 (368)
.... .... ....+.......- ++.....+. ++.|..+|+.+.+.. ..-.. .. .. ...+.. .+|.+.+...
T Consensus 143 ~~~~-h~~~v~~~~~~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~-h~-~~--v~~~~~sp~g~~l~s~~ 215 (319)
T 3frx_A 143 TLLG-HNDWVSQVRVVPNEKADD-DSVTIISAGNDKMVKAWNLNQFQIE-ADFIG-HN-SN--INTLTASPDGTLIASAG 215 (319)
T ss_dssp EECC-CSSCEEEEEECCC-------CCEEEEEETTSCEEEEETTTTEEE-EEECC-CC-SC--EEEEEECTTSSEEEEEE
T ss_pred EEec-cCCcEEEEEEccCCCCCC-CccEEEEEeCCCEEEEEECCcchhh-eeecC-CC-Cc--EEEEEEcCCCCEEEEEe
Confidence 1110 0000 0000000001111 222333333 778999999887665 22111 11 11 123333 3788777777
Q ss_pred CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeEEEEECCC
Q 043460 258 NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKT 337 (368)
Q Consensus 258 ~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ydl~t 337 (368)
.+..+.||-+... ..+..+... ..+.-+++.+++..+.......+..+++++
T Consensus 216 ~dg~i~iwd~~~~-------------------~~~~~~~~~---------~~v~~~~~sp~~~~la~~~~~~i~v~~~~~ 267 (319)
T 3frx_A 216 KDGEIMLWNLAAK-------------------KAMYTLSAQ---------DEVFSLAFSPNRYWLAAATATGIKVFSLDP 267 (319)
T ss_dssp TTCEEEEEETTTT-------------------EEEEEEECC---------SCEEEEEECSSSSEEEEEETTEEEEEEETT
T ss_pred CCCeEEEEECCCC-------------------cEEEEecCC---------CcEEEEEEcCCCCEEEEEcCCCcEEEEeCc
Confidence 8889999987653 122333211 123446778888777776777788888887
Q ss_pred CeE
Q 043460 338 NKM 340 (368)
Q Consensus 338 ~~~ 340 (368)
+..
T Consensus 268 ~~~ 270 (319)
T 3frx_A 268 QYL 270 (319)
T ss_dssp EEE
T ss_pred Cee
Confidence 664
No 220
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=33.55 E-value=3.4e+02 Score=26.26 Aligned_cols=138 Identities=12% Similarity=0.155 Sum_probs=65.1
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....+.|||..+.....+......+......+.+.|. ...-.++... ....+.+++.+++.-...-.... .
T Consensus 492 ~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~s---~d~~v~vwd~~~~~~~~~~~~h~-----~ 562 (694)
T 3dm0_A 492 RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN-TLQPTIVSAS---WDKTVKVWNLSNCKLRSTLAGHT-----G 562 (694)
T ss_dssp TTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC-SSSCEEEEEE---TTSCEEEEETTTCCEEEEECCCS-----S
T ss_pred CCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC-CCcceEEEEe---CCCeEEEEECCCCcEEEEEcCCC-----C
Confidence 3456777876554444333222112222344566663 1122233222 34568888887765332211100 0
Q ss_pred eeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEEEECCCeEEEEEEcc
Q 043460 194 FYVLQSVYS-RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 194 ~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~IW~l~~ 269 (368)
.. .++.+ .+|.+...+. ++.|..+|+.+.+-. . .+... .. ...+..+ +|.+. +...+..+.||-+..
T Consensus 563 ~v--~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~-~-~~~~~--~~--v~~~~~sp~~~~l-~~~~~~~i~iwd~~~ 632 (694)
T 3dm0_A 563 YV--STVAVSPDGSLCASGGKDGVVLLWDLAEGKKL-Y-SLEAN--SV--IHALCFSPNRYWL-CAATEHGIKIWDLES 632 (694)
T ss_dssp CE--EEEEECTTSSEEEEEETTSBCEEEETTTTEEE-E-CCBCS--SC--EEEEEECSSSSEE-EEEETTEEEEEETTT
T ss_pred CE--EEEEEeCCCCEEEEEeCCCeEEEEECCCCceE-E-EecCC--Cc--EEEEEEcCCCcEE-EEEcCCCEEEEECCC
Confidence 00 11222 1455544444 778999999887644 1 22111 11 2233334 44443 334456799998765
No 221
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=33.14 E-value=2.6e+02 Score=24.87 Aligned_cols=28 Identities=7% Similarity=0.231 Sum_probs=22.5
Q ss_pred CCCEEEEe-eCCeEEEEECCCCeEEEecc
Q 043460 318 NSDIIFLG-SCDMIYRYHLKTNKMELFST 345 (368)
Q Consensus 318 ~~~~v~~~-~~~~~~~ydl~t~~~~~v~~ 345 (368)
.++.||+. ...+++++|++|++...-..
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 46778877 67799999999999877665
No 222
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=32.50 E-value=2.7e+02 Score=24.80 Aligned_cols=93 Identities=9% Similarity=0.074 Sum_probs=49.1
Q ss_pred CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCc
Q 043460 166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDS 242 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~ 242 (368)
...+.+|+..++.-......... ... ....- ++.....+. ++.|..+|..+.+-...+ .... .. -
T Consensus 300 D~~I~iwd~~t~~~~~~~~~~~~--v~~----~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l--~gH~-~~--V 367 (420)
T 4gga_A 300 DRHIRIWNVCSGACLSAVDAHSQ--VCS----ILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAEL--KGHT-SR--V 367 (420)
T ss_dssp TCEEEEEETTTTEEEEEEECSSC--EEE----EEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEE--CCCS-SC--E
T ss_pred CCEEEEEeCCccccceeeccccc--eee----eeecC-CCCeEEEEEecCCCEEEEEECCCCcEEEEE--cCCC-CC--E
Confidence 45788888887754332211000 011 01112 333333332 577899999876543122 2111 11 2
Q ss_pred eeEEee-CCeEEEEEECCCeEEEEEEccC
Q 043460 243 EVIGLC-KGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 243 ~~l~~~-~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
..+..+ +|...+.+..+.++.||.+.+.
T Consensus 368 ~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 368 LSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 233333 7877777778889999988764
No 223
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=32.47 E-value=2.7e+02 Score=24.88 Aligned_cols=93 Identities=13% Similarity=0.182 Sum_probs=51.7
Q ss_pred CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCcee
Q 043460 166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEV 244 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~ 244 (368)
...+.+|+.+++.-...-.... ..-.++.. +|.....+. ++.|..+|+.+.+....+..+..... ...
T Consensus 298 d~~i~i~d~~~~~~~~~~~~~~-------~~v~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~ 366 (445)
T 2ovr_B 298 DTSIRVWDVETGNCIHTLTGHQ-------SLTSGMEL-KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS---AVT 366 (445)
T ss_dssp TSCEEEEETTTCCEEEEECCCC-------SCEEEEEE-ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS---CEE
T ss_pred CCeEEEEECCCCCEEEEEcCCc-------ccEEEEEE-eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCC---CEE
Confidence 4457777777654221110000 01124555 555444444 78899999988765424544432221 122
Q ss_pred EEeeCCeEEEEEECCCeEEEEEEcc
Q 043460 245 IGLCKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 245 l~~~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
-...++.+.+....+..+.||.+..
T Consensus 367 ~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 367 CLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EEEECSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCEEEEEeCCCeEEEEECCC
Confidence 2233677777777888999998776
No 224
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=32.44 E-value=2.4e+02 Score=24.17 Aligned_cols=184 Identities=10% Similarity=0.027 Sum_probs=91.2
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS 193 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~ 193 (368)
....+.|||..+++....-... ........+.+.+. . .++.... ....+.+++.+++.-...-...+.. ...
T Consensus 56 ~D~~v~vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~--~--~~l~s~s--~D~~i~lWd~~~~~~~~~~~~~~~~-~~~ 127 (321)
T 3ow8_A 56 LDDLVKVWKWRDERLDLQWSLE-GHQLGVVSVDISHT--L--PIAASSS--LDAHIRLWDLENGKQIKSIDAGPVD-AWT 127 (321)
T ss_dssp TTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECSS--S--SEEEEEE--TTSEEEEEETTTTEEEEEEECCTTC-CCC
T ss_pred CCCCEEEEECCCCCeeeeeeec-cCCCCEEEEEECCC--C--CEEEEEe--CCCcEEEEECCCCCEEEEEeCCCcc-EEE
Confidence 5567778887665432211111 01112233444441 1 2233222 3567888888877532211100000 000
Q ss_pred eeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEEEEccCC
Q 043460 194 FYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIWQLDDHR 271 (368)
Q Consensus 194 ~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW~l~~~~ 271 (368)
. ...- +|.....+. .+.|..+|+.+.+-...+...... ...+.. .+|++.+....+..+.||-+...
T Consensus 128 ~----~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~-----v~~~~~spdg~~lasg~~dg~i~iwd~~~~- 196 (321)
T 3ow8_A 128 L----AFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF-----ILSIAYSPDGKYLASGAIDGIINIFDIATG- 196 (321)
T ss_dssp E----EECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSC-----EEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred E----EECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCce-----EEEEEECCCCCEEEEEcCCCeEEEEECCCC-
Confidence 0 1111 344333333 677888998887654223222110 122333 37777777777889999977542
Q ss_pred CCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEE
Q 043460 272 HHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMEL 342 (368)
Q Consensus 272 ~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~ 342 (368)
..+..+.... ..+.-+.+.+++..++.. .+..+..||+++.+...
T Consensus 197 ------------------~~~~~~~~h~--------~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (321)
T 3ow8_A 197 ------------------KLLHTLEGHA--------MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242 (321)
T ss_dssp ------------------EEEEEECCCS--------SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE
T ss_pred ------------------cEEEEEcccC--------CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE
Confidence 2223332111 123446677777766655 55678889988877543
No 225
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=31.14 E-value=2.9e+02 Score=24.84 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=40.0
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEcc
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
+|.|||... ...|.++|+.....+.++..+.... ....++..++.|++....... |++.+.
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~---~P~gl~v~~~~lywtd~~~~~--V~~~~~ 318 (400)
T 3p5b_L 257 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA---HPFSLAVFEDKVFWTDIINEA--IFSANR 318 (400)
T ss_dssp TTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTS---SEEEEEEETTEEEEEESSSCS--EEEEES
T ss_pred CCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCC---CCEEEEEeCCEEEEecCCCCe--EEEEEc
Confidence 689999875 6789999998766552444332221 134667788999988864443 555554
No 226
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=30.87 E-value=2.6e+02 Score=24.04 Aligned_cols=126 Identities=14% Similarity=0.189 Sum_probs=62.9
Q ss_pred CCcEEEEeecCCCeeEEEEcccCc--cceecCCCC-----cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCC
Q 043460 103 CNGLILLGSSLSKHRYYVCNPLTK--QCVAIPKAR-----EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSE 175 (368)
Q Consensus 103 ~~Glll~~~~~~~~~~~v~NP~T~--~~~~lP~~~-----~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~ 175 (368)
.+|-|.+... ....+.++|+-.+ ....+.... ........++++||. .+. ++.... .....+.+|+..
T Consensus 100 ~~g~l~v~d~-~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~--lyv~d~-~~~~~I~~~~~~ 174 (329)
T 3fvz_A 100 TDGNYWVTDV-ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGA--VFVSDG-YCNSRIVQFSPS 174 (329)
T ss_dssp TTSCEEEEET-TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCC--EEEEEC-SSCCEEEEECTT
T ss_pred CCCCEEEEEC-CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCe--EEEEeC-CCCCeEEEEcCC
Confidence 4555555543 4567889998665 344443211 112234557888872 222 222221 024567888843
Q ss_pred CCCcee-ccccCCCC--CceeeeccceEEEe-C-CeEEEEEe-CCeEEEEEcCCCeEEEEEeCCC
Q 043460 176 NKTWIT-RKVSVKPR--RPVSFYVLQSVYSR-G-GILYNLTY-RSTILRYNIEALSEAEIIEVPD 234 (368)
Q Consensus 176 ~~~W~~-~~~~~~~~--~p~~~~~~~~v~~~-~-G~lywl~~-~~~il~fD~~~~~~~~~~~lP~ 234 (368)
+.... ....-... .+-.+..-.++.+. + |.+|+... ...|..||+.++++...+..+.
T Consensus 175 -g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 175 -GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp -SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred -CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 33221 11100000 00111111234441 4 88888775 6789999999766653565553
No 227
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=30.71 E-value=42 Score=22.21 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.0
Q ss_pred CeEEEEECCCCeEEEecc
Q 043460 328 DMIYRYHLKTNKMELFST 345 (368)
Q Consensus 328 ~~~~~ydl~t~~~~~v~~ 345 (368)
-+||.||.+|++++.+-.
T Consensus 40 iKIykyde~tNeI~LkKE 57 (72)
T 3kvp_A 40 IKIYEYNESRNEVKLKKE 57 (72)
T ss_dssp EEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEe
Confidence 589999999999886543
No 228
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=30.05 E-value=2.7e+02 Score=24.00 Aligned_cols=197 Identities=12% Similarity=0.086 Sum_probs=98.5
Q ss_pred EecCCcEEEEeecCCCeeEEEEcccC----cccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeC
Q 043460 100 IDCCNGLILLGSSLSKHRYYVCNPLT----KQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSS 174 (368)
Q Consensus 100 ~~s~~Glll~~~~~~~~~~~v~NP~T----~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss 174 (368)
.+..+|.|...+. ....++.+++.+ ..... ++. ......++++|+. .+ +++.... ....+++++.
T Consensus 37 ~d~~~~~ly~~D~-~~~~I~~~~~~g~~~~~~~~~~~~~----~~~~p~glavd~~-~~--~ly~~d~--~~~~I~~~~~ 106 (316)
T 1ijq_A 37 TEVASNRIYWSDL-SQRMICSTQLDRAHGVSSYDTVISR----DIQAPDGLAVDWI-HS--NIYWTDS--VLGTVSVADT 106 (316)
T ss_dssp EETTTTEEEEEET-TTTEEEEEEC--------CEEEECS----SCSCCCEEEEETT-TT--EEEEEET--TTTEEEEEET
T ss_pred EEeCCCEEEEEEC-CCCcEEEEECCCCCCCcccEEEEeC----CCCCcCEEEEeec-CC--eEEEEEC--CCCEEEEEeC
Confidence 3445666666654 456778888876 22222 221 1123468888863 22 3333322 3557888887
Q ss_pred CCCCceeccccCCCCCceeeeccceEEE--eCCeEEEEEeC--CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--
Q 043460 175 ENKTWITRKVSVKPRRPVSFYVLQSVYS--RGGILYNLTYR--STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-- 248 (368)
Q Consensus 175 ~~~~W~~~~~~~~~~~p~~~~~~~~v~~--~~G~lywl~~~--~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-- 248 (368)
....-+..... . .. .-.++.+ .+|.+||.... ..|.++|+...... .+-. ..... ...++..
T Consensus 107 ~g~~~~~~~~~-~----~~--~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~~~~-~~~~~---P~gla~d~~ 174 (316)
T 1ijq_A 107 KGVKRKTLFRE-N----GS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVT-ENIQW---PNGITLDLL 174 (316)
T ss_dssp TSSSEEEEEEC-T----TC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEEC-SSCSC---EEEEEEETT
T ss_pred CCCceEEEEEC-C----CC--CcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-EEEE-CCCCC---ceEEEEecc
Confidence 65432222110 0 11 1123333 17899998762 68999999866555 3321 11111 2244444
Q ss_pred CCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--e
Q 043460 249 KGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--S 326 (368)
Q Consensus 249 ~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~ 326 (368)
+++||++.....++ ++.+-++. .=..+.... ..+ ..|.++.-.++-+|+. .
T Consensus 175 ~~~lY~~D~~~~~I--~~~d~dg~---------------~~~~~~~~~-~~~---------~~P~giav~~~~ly~~d~~ 227 (316)
T 1ijq_A 175 SGRLYWVDSKLHSI--SSIDVNGG---------------NRKTILEDE-KRL---------AHPFSLAVFEDKVFWTDII 227 (316)
T ss_dssp TTEEEEEETTTTEE--EEEETTSC---------------SCEEEEECT-TTT---------SSEEEEEEETTEEEEEETT
T ss_pred CCEEEEEECCCCeE--EEEecCCC---------------ceEEEeecC-Ccc---------CCcEEEEEECCEEEEEECC
Confidence 67898887655544 44443322 111111110 111 1333433335677776 5
Q ss_pred CCeEEEEECCCCe-EEEecc
Q 043460 327 CDMIYRYHLKTNK-MELFST 345 (368)
Q Consensus 327 ~~~~~~ydl~t~~-~~~v~~ 345 (368)
..++.++|..+++ .+.+..
T Consensus 228 ~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 228 NEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp TTEEEEEETTTCCCCEEEEC
T ss_pred CCeEEEEeCCCCcceEEEec
Confidence 6789999986655 444443
No 229
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=29.63 E-value=2.5e+02 Score=23.45 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=25.3
Q ss_pred ceEEEEEecCCCEEEEe-eCCeEEEEECCCC-eEEEecc
Q 043460 309 LTRFYNIHPNSDIIFLG-SCDMIYRYHLKTN-KMELFST 345 (368)
Q Consensus 309 ~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~-~~~~v~~ 345 (368)
.+.-+.+.+++..++.. .++.+..+|++++ +++.+..
T Consensus 308 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 308 EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheee
Confidence 34556677777766665 5678999999985 4555543
No 230
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=29.29 E-value=3.1e+02 Score=24.44 Aligned_cols=192 Identities=9% Similarity=0.116 Sum_probs=93.6
Q ss_pred CcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR 182 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~ 182 (368)
+|-+++... ....+.|||..+++... +... ......+.+.|. +.+ ++... ....+.+|+.+++.-...
T Consensus 161 ~~~~l~sgs-~D~~i~iwd~~~~~~~~~~~~h----~~~V~~v~~~p~--~~~-l~s~s---~D~~i~~wd~~~~~~~~~ 229 (410)
T 1vyh_C 161 SGKLLASCS-ADMTIKLWDFQGFECIRTMHGH----DHNVSSVSIMPN--GDH-IVSAS---RDKTIKMWEVQTGYCVKT 229 (410)
T ss_dssp TSSEEEEEE-TTSCCCEEETTSSCEEECCCCC----SSCEEEEEECSS--SSE-EEEEE---TTSEEEEEETTTCCEEEE
T ss_pred CCCEEEEEe-CCCeEEEEeCCCCceeEEEcCC----CCCEEEEEEeCC--CCE-EEEEe---CCCeEEEEECCCCcEEEE
Confidence 443333332 56678889987766443 2211 123345667662 233 33222 356788999888753221
Q ss_pred cccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCC--------C--------CCceeE
Q 043460 183 KVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNH--------P--------CDSEVI 245 (368)
Q Consensus 183 ~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~--------~--------~~~~~l 245 (368)
-.... .....-...- +|.+...+. ++.|..+|+.+.+....+........ . ......
T Consensus 230 ~~~h~-----~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 303 (410)
T 1vyh_C 230 FTGHR-----EWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 303 (410)
T ss_dssp EECCS-----SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred EeCCC-----ccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccc
Confidence 11000 0000001112 455555544 67888899888765412211110000 0 000000
Q ss_pred EeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe
Q 043460 246 GLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG 325 (368)
Q Consensus 246 ~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 325 (368)
....|.+.+....+..+.||-+... ..+.++.-. . ..+.-+.+.+++..|+..
T Consensus 304 ~~~~g~~l~sgs~D~~i~iwd~~~~-------------------~~~~~~~~h----~----~~v~~v~~~~~g~~l~s~ 356 (410)
T 1vyh_C 304 SGKPGPFLLSGSRDKTIKMWDVSTG-------------------MCLMTLVGH----D----NWVRGVLFHSGGKFILSC 356 (410)
T ss_dssp ----CCEEEEEETTSEEEEEETTTT-------------------EEEEEEECC----S----SCEEEEEECSSSSCEEEE
T ss_pred cCCCCCEEEEEeCCCeEEEEECCCC-------------------ceEEEEECC----C----CcEEEEEEcCCCCEEEEE
Confidence 1113666667777889999987652 122222211 0 223445667777666655
Q ss_pred -eCCeEEEEECCCCe
Q 043460 326 -SCDMIYRYHLKTNK 339 (368)
Q Consensus 326 -~~~~~~~ydl~t~~ 339 (368)
.++.+..+|+++.+
T Consensus 357 s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 357 ADDKTLRVWDYKNKR 371 (410)
T ss_dssp ETTTEEEEECCTTSC
T ss_pred eCCCeEEEEECCCCc
Confidence 55678888887766
No 231
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=29.19 E-value=4.3e+02 Score=26.13 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=38.3
Q ss_pred CCeEEEEEeC-----CeEEEEEcCC-CeEEEE-EeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEcc
Q 043460 204 GGILYNLTYR-----STILRYNIEA-LSEAEI-IEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 204 ~G~lywl~~~-----~~il~fD~~~-~~~~~~-~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
++.+|+++.. ..|..+|+.+ +.|+ . + +|...... ...+...++.|++....+...+||+++.
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~-~~l-i~~~~~~~--l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWS-HVL-VDHSEDVF--MESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCC-CEE-ECCCSSEE--EEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccce-eeE-ECCCCCcE--EEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 6678888763 3799999886 6777 3 2 22221110 1123334677887777767778888764
No 232
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=28.66 E-value=2.6e+02 Score=23.41 Aligned_cols=144 Identities=16% Similarity=0.208 Sum_probs=73.3
Q ss_pred CcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460 104 NGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR 182 (368)
Q Consensus 104 ~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~ 182 (368)
+|-+++... ....+.|||..+++... +... ......+.+.|. +.+ ++ ... ....+.+|+.+++.-...
T Consensus 76 ~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~--~~~-l~-s~~--~d~~i~iwd~~~~~~~~~ 144 (312)
T 4ery_A 76 DSNLLVSAS-DDKTLKIWDVSSGKCLKTLKGH----SNYVFCCNFNPQ--SNL-IV-SGS--FDESVRIWDVKTGKCLKT 144 (312)
T ss_dssp TSSEEEEEE-TTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSS--SSE-EE-EEE--TTSCEEEEETTTCCEEEE
T ss_pred CCCEEEEEC-CCCEEEEEECCCCcEEEEEcCC----CCCEEEEEEcCC--CCE-EE-EEe--CCCcEEEEECCCCEEEEE
Confidence 443333332 56788999988876443 2211 112334566662 232 22 222 245688899887653221
Q ss_pred cccCCCCCceeeeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCeEEEEEECC
Q 043460 183 KVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGALNYASRNQ 259 (368)
Q Consensus 183 ~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~~~~~~ 259 (368)
-... ..+. .++.+ .+|.+...+. ++.|..+|+.+.+....+... .. .. ...+. ..+|...++...+
T Consensus 145 ~~~~--~~~v-----~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~-~~--~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 145 LPAH--SDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DN-PP--VSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp ECCC--SSCE-----EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS-SC-CC--EEEEEECTTSSEEEEEETT
T ss_pred ecCC--CCcE-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc-CC-Cc--eEEEEECCCCCEEEEEcCC
Confidence 1100 0011 11222 1454444443 778999999987654122211 11 10 11233 3367777777778
Q ss_pred CeEEEEEEcc
Q 043460 260 STLLIWQLDD 269 (368)
Q Consensus 260 ~~~~IW~l~~ 269 (368)
..+.||-+..
T Consensus 214 ~~i~iwd~~~ 223 (312)
T 4ery_A 214 NTLKLWDYSK 223 (312)
T ss_dssp TEEEEEETTT
T ss_pred CeEEEEECCC
Confidence 8999998765
No 233
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=27.57 E-value=1.7e+02 Score=26.11 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=36.6
Q ss_pred CcEEEEEeCCCCCceeccccC--CCCCceeeeccceEE-------EeCCeEEEEEeCCeEEEEEcCCCeEE
Q 043460 166 DPEVDIFSSENKTWITRKVSV--KPRRPVSFYVLQSVY-------SRGGILYNLTYRSTILRYNIEALSEA 227 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~~--~~~~p~~~~~~~~v~-------~~~G~lywl~~~~~il~fD~~~~~~~ 227 (368)
.-.+..|+.++|.|+...... -...|... .+.+|. . +|.+|.-..++.+.++|..+++..
T Consensus 66 dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~-~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 66 DGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVE-DEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp TTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------C-CEEEEECEEEEEEEEEETTTCCEE
T ss_pred CCEEEEEECCCCcEEeeeccccceecccccc-CCCceeeccccccc-CCEEEEEecCCEEEEEECCCCcEE
Confidence 345677777777665322110 01112222 344566 7 999999998999999999998665
No 234
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=27.26 E-value=3.4e+02 Score=24.28 Aligned_cols=70 Identities=6% Similarity=0.128 Sum_probs=39.1
Q ss_pred CCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEec-CCCEEEEe-
Q 043460 249 KGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHP-NSDIIFLG- 325 (368)
Q Consensus 249 ~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~- 325 (368)
+|. +.+.+..+..+.||.+...... .+.......+. ... ..+.-+.+.+ ++.+++..
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~--------------~~~~~~~~~~~---~h~---~~v~~v~~~p~~~~~l~s~~ 251 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKE--------------HRVIDAKNIFT---GHT---AVVEDVAWHLLHESLFGSVA 251 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBG--------------GGEEECSEEEC---CCS---SCEEEEEECSSCTTEEEEEE
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCC--------------Cceeccceeec---CCC---CCEeeeEEeCCCCCEEEEEe
Confidence 444 6666667789999999875220 23321111111 110 2344456666 44444444
Q ss_pred eCCeEEEEECCCC
Q 043460 326 SCDMIYRYHLKTN 338 (368)
Q Consensus 326 ~~~~~~~ydl~t~ 338 (368)
.++.+..||+++.
T Consensus 252 ~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 252 DDQKLMIWDTRNN 264 (430)
T ss_dssp TTSEEEEEETTCS
T ss_pred CCCeEEEEECCCC
Confidence 5678999999876
No 235
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=27.09 E-value=2.9e+02 Score=23.40 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=36.4
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEEEECCCeEEEEEEccC
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYASRNQSTLLIWQLDDH 270 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~IW~l~~~ 270 (368)
++.||.+.. ...|+.+|+.....+ .+++... .+.-.++.. +|.++++......+.+..++..
T Consensus 38 ~~~L~aV~d~~~~I~~ld~~g~v~~-~i~l~g~----~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 38 SNTLFSTINKPAAIVEMTTNGDLIR-TIPLDFV----KDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TTEEEEEEETTEEEEEEETTCCEEE-EEECSSC----SSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEECCCCeEEEEeCCCCEEE-EEecCCC----CChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 356777665 678999999966667 7766422 123344443 4554444334455555555553
No 236
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.76 E-value=3.4e+02 Score=23.76 Aligned_cols=191 Identities=11% Similarity=0.095 Sum_probs=95.0
Q ss_pred CCeeEEEEcccCccceecCCCC--cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCc
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAR--EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRP 191 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~--~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p 191 (368)
....+.+||..+++....-... .........+.+.+. +...++ ... ....+.+|+.+...-.... ...+
T Consensus 178 ~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~-sgs--~D~~v~~wd~~~~~~~~~~--~~~h-- 248 (380)
T 3iz6_a 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL--NANMFI-SGS--CDTTVRLWDLRITSRAVRT--YHGH-- 248 (380)
T ss_dssp TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS--SCCEEE-EEE--TTSCEEEEETTTTCCCCEE--ECCC--
T ss_pred CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC--CCCEEE-EEE--CCCeEEEEECCCCCcceEE--ECCc--
Confidence 5678899999998866532211 111122334445441 122222 222 2456888887643210000 0000
Q ss_pred eeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCC--CceeEE-eeCCeEEEEEECCCeEEEEE
Q 043460 192 VSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPC--DSEVIG-LCKGALNYASRNQSTLLIWQ 266 (368)
Q Consensus 192 ~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~--~~~~l~-~~~G~L~~~~~~~~~~~IW~ 266 (368)
.. .-.++.+. +|.....+. ++.|..+|+.+.+-...+.......... ....+. ..+|++.+....+..+.||-
T Consensus 249 ~~--~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 249 EG--DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326 (380)
T ss_dssp SS--CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CC--CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence 00 00122221 444433333 7789999999876542443322211110 012333 34788888888888999997
Q ss_pred EccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCC
Q 043460 267 LDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTN 338 (368)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~ 338 (368)
+... + .+..+. .+..... ..+.-+++.+++..+... .+..+..+++.+.
T Consensus 327 ~~~~-----------------~--~~~~~~--~~~~~h~--~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 327 TLLA-----------------E--MVLNLG--TLQNSHE--GRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp TTTC-----------------C--EEEEEC--CSCSSCC--CCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCCC-----------------c--eEEEEe--cccCCCC--CceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 6542 1 122221 1111000 234456778888876665 4667888888765
No 237
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=25.37 E-value=3.4e+02 Score=23.69 Aligned_cols=192 Identities=13% Similarity=0.153 Sum_probs=99.9
Q ss_pred cCCcEEE-EeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460 102 CCNGLIL-LGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI 180 (368)
Q Consensus 102 s~~Glll-~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~ 180 (368)
|-+|-++ +........+.|||+.|++........ .....+.+.|. +.+ ++... .....++...++.-.
T Consensus 142 SpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~----~~V~~v~fspd--g~~--l~s~s---~~~~~~~~~~~~~~~ 210 (365)
T 4h5i_A 142 SREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR----GEVKDLHFSTD--GKV--VAYIT---GSSLEVISTVTGSCI 210 (365)
T ss_dssp CTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS----SCCCEEEECTT--SSE--EEEEC---SSCEEEEETTTCCEE
T ss_pred cCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC----CceEEEEEccC--Cce--EEecc---ceeEEEEEeccCcce
Confidence 4455443 333335678899999998877654322 23456777772 233 22222 234667776666543
Q ss_pred eccccCCCCCceeeeccceEEEeCCeEEEEEe-CC----eEEEEEcCCCeEEEEEe---CCCCCCCCCCceeEEe-eCCe
Q 043460 181 TRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RS----TILRYNIEALSEAEIIE---VPDKNNHPCDSEVIGL-CKGA 251 (368)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~----~il~fD~~~~~~~~~~~---lP~~~~~~~~~~~l~~-~~G~ 251 (368)
......... .....-...- +|.....+. +. .+..+|....... ... +...... -..+.. .+|+
T Consensus 211 ~~~~~~~~~---~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~---V~~~~~Spdg~ 282 (365)
T 4h5i_A 211 ARKTDFDKN---WSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKG---ITSMDVDMKGE 282 (365)
T ss_dssp EEECCCCTT---EEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEE-EEEEEEEESSCSC---EEEEEECTTSC
T ss_pred eeeecCCCC---CCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceec-ceeeeeecCCCCC---eEeEEECCCCC
Confidence 322111100 0011112223 565555443 21 4666777666554 222 2211111 123333 3788
Q ss_pred EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeE
Q 043460 252 LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMI 330 (368)
Q Consensus 252 L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~ 330 (368)
+.+....+..+.||-++.. ..+.++. .... ..+.-+++.+++..|.-. .+..+
T Consensus 283 ~lasgs~D~~V~iwd~~~~-------------------~~~~~~~----~gH~---~~V~~v~fSpdg~~laS~S~D~tv 336 (365)
T 4h5i_A 283 LAVLASNDNSIALVKLKDL-------------------SMSKIFK----QAHS---FAITEVTISPDSTYVASVSAANTI 336 (365)
T ss_dssp EEEEEETTSCEEEEETTTT-------------------EEEEEET----TSSS---SCEEEEEECTTSCEEEEEETTSEE
T ss_pred ceEEEcCCCEEEEEECCCC-------------------cEEEEec----Cccc---CCEEEEEECCCCCEEEEEeCCCeE
Confidence 8888888889999977542 2233321 1000 234557788888866655 56678
Q ss_pred EEEECCCC
Q 043460 331 YRYHLKTN 338 (368)
Q Consensus 331 ~~ydl~t~ 338 (368)
-.+|+.++
T Consensus 337 rvw~ip~~ 344 (365)
T 4h5i_A 337 HIIKLPLN 344 (365)
T ss_dssp EEEECCTT
T ss_pred EEEEcCCC
Confidence 88888644
No 238
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=25.31 E-value=3e+02 Score=23.08 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=54.7
Q ss_pred CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEE
Q 043460 213 RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILK 292 (368)
Q Consensus 213 ~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~ 292 (368)
++.|..+|+.+.+....+....... .......+|.+.+....+..+.||-++... .+
T Consensus 34 dg~v~lWd~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~-------------------~~ 90 (304)
T 2ynn_A 34 SGRVELWNYETQVEVRSIQVTETPV----RAGKFIARKNWIIVGSDDFRIRVFNYNTGE-------------------KV 90 (304)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCE----EEEEEEGGGTEEEEEETTSEEEEEETTTCC-------------------EE
T ss_pred CCcEEEEECCCCceeEEeeccCCcE----EEEEEeCCCCEEEEECCCCEEEEEECCCCc-------------------EE
Confidence 6788889998876542443322110 112223467777777788899999876531 12
Q ss_pred EEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCC
Q 043460 293 HSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTN 338 (368)
Q Consensus 293 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~ 338 (368)
..+.... ..+.-+.+.+++..++.. .+..+..+|++++
T Consensus 91 ~~~~~h~--------~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 129 (304)
T 2ynn_A 91 VDFEAHP--------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (304)
T ss_dssp EEEECCS--------SCEEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred EEEeCCC--------CcEEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence 2222110 224445667776665554 4566778887765
No 239
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=25.05 E-value=3e+02 Score=22.98 Aligned_cols=208 Identities=9% Similarity=0.066 Sum_probs=97.8
Q ss_pred cEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC-ceecc
Q 043460 105 GLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT-WITRK 183 (368)
Q Consensus 105 Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~-W~~~~ 183 (368)
|-+++... ....+.|||..++++..+..... .......+.+.|...+. .++... ....+.+|+.+++. +....
T Consensus 67 g~~l~s~s-~D~~v~iWd~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~g~--~l~s~s--~d~~v~~wd~~~~~~~~~~~ 140 (297)
T 2pm7_B 67 GTILASCS-YDGKVMIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP--MLLVAS--SDGKVSVVEFKENGTTSPII 140 (297)
T ss_dssp CSEEEEEE-TTTEEEEEEBSSSCBCCCEEECC-CSSCEEEEEECCGGGCS--EEEEEE--TTSEEEEEEBCSSSCBCCEE
T ss_pred CCEEEEEc-CCCEEEEEEcCCCceEEEEEeec-CCCceeEEEeCcCCCCc--EEEEEE--CCCcEEEEEecCCCceeeee
Confidence 54444433 66788999998876544322110 11123345666521122 222222 34578888877652 32111
Q ss_pred c-cCCCCC-ceeeeccce-------EEEeCCeEEEEEe-CCeEEEEEcCCCe--EEEEEeCCCCCCCCCCceeEEee-C-
Q 043460 184 V-SVKPRR-PVSFYVLQS-------VYSRGGILYNLTY-RSTILRYNIEALS--EAEIIEVPDKNNHPCDSEVIGLC-K- 249 (368)
Q Consensus 184 ~-~~~~~~-p~~~~~~~~-------v~~~~G~lywl~~-~~~il~fD~~~~~--~~~~~~lP~~~~~~~~~~~l~~~-~- 249 (368)
. ...... ...+..... ..- +|.....+. ++.|..+|+.+.+ +.....+...... -..+... +
T Consensus 141 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~-~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~---V~~v~~sp~~ 216 (297)
T 2pm7_B 141 IDAHAIGVNSASWAPATIEEDGEHNGTK-ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---VRDVAWSPTV 216 (297)
T ss_dssp EECCSSCEEEEEECCCC-------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---EEEEEECCCC
T ss_pred eecccCccceEeecCCcccccccCCCCC-CcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc---eEEEEECCCC
Confidence 0 000000 000000000 001 133444443 6778888887643 3312223221111 1223322 3
Q ss_pred --CeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-e
Q 043460 250 --GALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-S 326 (368)
Q Consensus 250 --G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~ 326 (368)
+.+.+....+.++.||.++.... .|.... +...... ..+.-+++.+++..|... .
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~~~---------------~~~~~~-~~~~~~~------~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNEQG---------------PWKKTL-LKEEKFP------DVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTS---------------CCEEEE-SSSSCCS------SCEEEEEECSSSCCEEEEET
T ss_pred CCceEEEEEECCCcEEEEEeCCCCC---------------ccceee-eecccCC------CcEEEEEECCCCCEEEEEcC
Confidence 36666666788999999887544 565432 1111111 234445677777766665 4
Q ss_pred CCeEEEEECC-CCeEEEec
Q 043460 327 CDMIYRYHLK-TNKMELFS 344 (368)
Q Consensus 327 ~~~~~~ydl~-t~~~~~v~ 344 (368)
+..+..++.. .++|+.+.
T Consensus 275 D~~v~lw~~~~~g~w~~~~ 293 (297)
T 2pm7_B 275 DNKVTLWKENLEGKWEPAG 293 (297)
T ss_dssp TSCEEEEEECTTSCEEEC-
T ss_pred CCcEEEEEECCCCcEEecc
Confidence 5667777766 34566654
No 240
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=24.75 E-value=4.7e+02 Score=25.12 Aligned_cols=106 Identities=8% Similarity=-0.059 Sum_probs=53.4
Q ss_pred CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC-----CCcEEEEEeCCCCCceeccccCCC
Q 043460 114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR-----MDPEVDIFSSENKTWITRKVSVKP 188 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~-----~~~~~~vyss~~~~W~~~~~~~~~ 188 (368)
....+.+||+.|++...+-............+.+.| .+.+-++...... ....+.+++..++.-+........
T Consensus 35 ~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 112 (723)
T 1xfd_A 35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (723)
T ss_dssp SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred CCCCEEEEECCCCcEEEEeccccccccccceEEECC--CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccc
Confidence 344789999999987665432211111244566666 2444443322111 126788999988875444321110
Q ss_pred CC-ceeeeccceEEEeCC-eEEEEEeCCeEEEEEcCCCeEE
Q 043460 189 RR-PVSFYVLQSVYSRGG-ILYNLTYRSTILRYNIEALSEA 227 (368)
Q Consensus 189 ~~-p~~~~~~~~v~~~~G-~lywl~~~~~il~fD~~~~~~~ 227 (368)
.. .... ...= +| .|.+.. ...|..+|+.+.+..
T Consensus 113 ~~~~~~~----~~SP-dG~~la~~~-~~~i~~~~~~~g~~~ 147 (723)
T 1xfd_A 113 NAKLQYA----GWGP-KGQQLIFIF-ENNIYYCAHVGKQAI 147 (723)
T ss_dssp SCCCSBC----CBCS-STTCEEEEE-TTEEEEESSSSSCCE
T ss_pred ccccccc----EECC-CCCEEEEEE-CCeEEEEECCCCceE
Confidence 00 0000 1111 34 233333 467788888776655
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=24.49 E-value=3.1e+02 Score=22.97 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=17.9
Q ss_pred CCeEEEEEeCCeEEEEEcCCCeEEEEEeCC
Q 043460 204 GGILYNLTYRSTILRYNIEALSEAEIIEVP 233 (368)
Q Consensus 204 ~G~lywl~~~~~il~fD~~~~~~~~~~~lP 233 (368)
+|.+|.-.....|.+||...+... ...++
T Consensus 147 ~g~l~vgt~~~~l~~~d~~g~~~~-~~~~~ 175 (330)
T 3hxj_A 147 DGTIYVGSNDNYLYAINPDGTEKW-RFKTN 175 (330)
T ss_dssp TSCEEEECTTSEEEEECTTSCEEE-EEECS
T ss_pred CCEEEEEcCCCEEEEECCCCCEeE-EEecC
Confidence 566555443589999999833333 44444
No 242
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=23.62 E-value=3.6e+02 Score=23.34 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=71.7
Q ss_pred CCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCce
Q 043460 114 SKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPV 192 (368)
Q Consensus 114 ~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~ 192 (368)
....+.+||..+++... +.... .....+.+.|... .-.++... ....+.+++.+++.....-..... +.
T Consensus 174 ~D~~v~lwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~-g~~l~sgs---~Dg~v~~wd~~~~~~~~~~~~h~~--~v 243 (354)
T 2pbi_B 174 GDGTCALWDVESGQLLQSFHGHG----ADVLCLDLAPSET-GNTFVSGG---CDKKAMVWDMRSGQCVQAFETHES--DV 243 (354)
T ss_dssp TTSEEEEEETTTCCEEEEEECCS----SCEEEEEECCCSS-CCEEEEEE---TTSCEEEEETTTCCEEEEECCCSS--CE
T ss_pred CCCcEEEEeCCCCeEEEEEcCCC----CCeEEEEEEeCCC-CCEEEEEe---CCCeEEEEECCCCcEEEEecCCCC--Ce
Confidence 56788999998877543 22111 1223345555211 22233222 245788899888764322111000 00
Q ss_pred eeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCeEEEEEECCCeEEEEEEcc
Q 043460 193 SFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGALNYASRNQSTLLIWQLDD 269 (368)
Q Consensus 193 ~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~~IW~l~~ 269 (368)
.++.+. +|.....+. ++.|..+|+.+.+-............ ...+. ..+|.+.++...+..+.||-+..
T Consensus 244 -----~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~---~~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 244 -----NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG---ASSVDFSLSGRLLFAGYNDYTINVWDVLK 315 (354)
T ss_dssp -----EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC---EEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred -----EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc---eeEEEEeCCCCEEEEEECCCcEEEEECCC
Confidence 122220 354444444 77899999988755412222111101 12233 33788888888888999998754
No 243
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=23.13 E-value=3.3e+02 Score=22.80 Aligned_cols=137 Identities=12% Similarity=0.162 Sum_probs=69.5
Q ss_pred CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCcee
Q 043460 166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEV 244 (368)
Q Consensus 166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~ 244 (368)
...+.+++.+++.-...-... ..+.. .-...- +|.....+. ++.|..+|+.+++....+..... . -..
T Consensus 34 dg~v~lWd~~~~~~~~~~~~~--~~~v~---~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~--~---v~~ 102 (304)
T 2ynn_A 34 SGRVELWNYETQVEVRSIQVT--ETPVR---AGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD--Y---IRS 102 (304)
T ss_dssp TSEEEEEETTTTEEEEEEECC--SSCEE---EEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCSS--C---EEE
T ss_pred CCcEEEEECCCCceeEEeecc--CCcEE---EEEEeC-CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC--c---EEE
Confidence 457888888876532211000 00110 001122 444333333 77899999988765413322111 1 123
Q ss_pred EEe-eCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEec-CCCEE
Q 043460 245 IGL-CKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHP-NSDII 322 (368)
Q Consensus 245 l~~-~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v 322 (368)
+.. .+|.+.+....+.++.||-++. .+.....+.-.. ..+.-+.+.+ ++..+
T Consensus 103 ~~~~~~~~~l~sgs~D~~v~lWd~~~------------------~~~~~~~~~~h~--------~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 103 IAVHPTKPYVLSGSDDLTVKLWNWEN------------------NWALEQTFEGHE--------HFVMCVAFNPKDPSTF 156 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEGGG------------------TTEEEEEECCCC--------SCEEEEEECTTCTTEE
T ss_pred EEEcCCCCEEEEECCCCeEEEEECCC------------------CcchhhhhcccC--------CcEEEEEECCCCCCEE
Confidence 333 3677777777888999998875 344433332110 1233355555 33444
Q ss_pred EEe-eCCeEEEEECCCCe
Q 043460 323 FLG-SCDMIYRYHLKTNK 339 (368)
Q Consensus 323 ~~~-~~~~~~~ydl~t~~ 339 (368)
... .+..+..+|+++.+
T Consensus 157 ~sgs~D~~v~iwd~~~~~ 174 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQST 174 (304)
T ss_dssp EEEETTSEEEEEETTCSS
T ss_pred EEEeCCCeEEEEECCCCC
Confidence 443 45667777876554
No 244
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=22.86 E-value=3.7e+02 Score=23.20 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=24.2
Q ss_pred EEEEecCCCEEEEee-----CCeEEEEECCCCeEEEec
Q 043460 312 FYNIHPNSDIIFLGS-----CDMIYRYHLKTNKMELFS 344 (368)
Q Consensus 312 ~~~~~~~~~~v~~~~-----~~~~~~ydl~t~~~~~v~ 344 (368)
=+++.++++.+|+.+ ...+++||+++++..++-
T Consensus 124 ~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 124 DLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp EEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred eEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 356676667888873 468999999988876643
No 245
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=22.15 E-value=5.6e+02 Score=25.07 Aligned_cols=55 Identities=9% Similarity=0.178 Sum_probs=32.4
Q ss_pred cEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEE
Q 043460 167 PEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEII 230 (368)
Q Consensus 167 ~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~ 230 (368)
..+..|+..++........ . +.. . ..+...+|.| |++....+..||..++++. .+
T Consensus 82 ~Gl~~yd~~~~~f~~~~~~-~---~~~-i--~~i~~~~g~l-Wigt~~Gl~~~~~~~~~~~-~~ 136 (758)
T 3ott_A 82 NGILVYNYRADRYEQPETD-F---PTD-V--RTMALQGDTL-WLGALNGLYTYQLQSRKLT-SF 136 (758)
T ss_dssp TEEEEEETTTTEECCCSCC-C---CSC-E--EEEEEETTEE-EEEETTEEEEEETTTCCEE-EE
T ss_pred CCeEEEeCCCCEEECcccC-C---Cce-E--EEEEecCCcE-EEEcCCcceeEeCCCCeEE-Ee
Confidence 3567899888776541100 0 000 0 1233327765 4554669999999999888 55
No 246
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=21.60 E-value=4.1e+02 Score=23.24 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=24.2
Q ss_pred EEEecCCCEEEEee---CCeEEEEECCCCeEEE
Q 043460 313 YNIHPNSDIIFLGS---CDMIYRYHLKTNKMEL 342 (368)
Q Consensus 313 ~~~~~~~~~v~~~~---~~~~~~ydl~t~~~~~ 342 (368)
+++.+++..+|... ...+..+|+++++...
T Consensus 113 i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~ 145 (361)
T 2oiz_A 113 FRQTTDGKFIVLQNASPATSIGIVDVAKGDYVE 145 (361)
T ss_dssp EEECTTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEECCCCCCeEEEEECCCCcEEE
Confidence 57888999999873 4679999999998643
No 247
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=21.49 E-value=5e+02 Score=24.46 Aligned_cols=107 Identities=10% Similarity=0.116 Sum_probs=59.5
Q ss_pred CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe--------eCCe-EEEEEECC----CeEEEEEEcc
Q 043460 204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL--------CKGA-LNYASRNQ----STLLIWQLDD 269 (368)
Q Consensus 204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~--------~~G~-L~~~~~~~----~~~~IW~l~~ 269 (368)
+|.||.... ...|..+|+.+.+....+..+... ......++. .+|. |++..... ....|..+..
T Consensus 151 ~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~--~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r 228 (496)
T 3kya_A 151 KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP--TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKR 228 (496)
T ss_dssp EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS--CSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEECCCCEEEEEEccCccc--cCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEec
Confidence 377888776 367999999999888344443211 111223433 3565 77776643 2455666644
Q ss_pred CC-CCCCCCCCccCCCCCCceEE---EEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECC
Q 043460 270 HR-HHSNSHGSNKAASGARSWIL---KHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLK 336 (368)
Q Consensus 270 ~~-~~~~~~~~~~~~~~~~~W~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~ 336 (368)
.. + .|.. ...+. .+.. ..-+++++.++.||+. ....+++||++
T Consensus 229 ~~~G---------------~~~~~~~~~~v~--~~~~-------p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 229 NADG---------------TFDDRSDIQLIA--AYKQ-------CNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp CTTS---------------CCSTTSCEEEEE--EESC-------CCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred CCCC---------------ceeecccceeec--cCCC-------ceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 32 2 3421 01222 1211 1124667766667776 56679999998
No 248
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=20.54 E-value=1.3e+02 Score=27.22 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=27.8
Q ss_pred CeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeec
Q 043460 250 GALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMD 298 (368)
Q Consensus 250 G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~ 298 (368)
..+|++...+..+.+|...+. . +|+++++..+.
T Consensus 53 ~~~~~~~~~~~~v~lw~~~~~-~---------------~~~~~~~~~~~ 85 (356)
T 2w18_A 53 KEPCIITACEDVVSLWKALDA-W---------------QWEKLYTWHFA 85 (356)
T ss_dssp CEEEEEEEESSEEEEEEESSS-S---------------BEEEEEEEECC
T ss_pred CccEEEEeccceEEEcccCCC-c---------------cceeeEEEecc
Confidence 468999999999999999885 4 79999998743
No 249
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=20.23 E-value=7.1e+02 Score=25.52 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=41.1
Q ss_pred cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEe------CCCcEEEEEeCC
Q 043460 102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRA------RMDPEVDIFSSE 175 (368)
Q Consensus 102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~------~~~~~~~vyss~ 175 (368)
+-+|-.++... ....+++||..|++.+.+-... ......+.+.| .+.+-++..... .....+.+++..
T Consensus 387 SpDG~~la~~~-~~~~v~~~d~~tg~~~~~~~~~---~~~v~~~~~Sp--DG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 387 DRNGKFAVVAN-DRFEIMTVDLETGKPTVIERSR---EAMITDFTISD--NSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp CTTSSEEEEEE-TTSEEEEEETTTCCEEEEEECS---SSCCCCEEECT--TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CCCCCEEEEEC-CCCeEEEEECCCCceEEeccCC---CCCccceEECC--CCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 44554333322 4568999999999887764221 11234566666 234444333321 123578888988
Q ss_pred CCCcee
Q 043460 176 NKTWIT 181 (368)
Q Consensus 176 ~~~W~~ 181 (368)
++....
T Consensus 461 ~g~~~~ 466 (1045)
T 1k32_A 461 GRKIFA 466 (1045)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 876433
No 250
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=20.07 E-value=43 Score=20.26 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHcCCC
Q 043460 5 YLSEDLITEILSRLP 19 (368)
Q Consensus 5 ~LP~Dll~~IL~rLp 19 (368)
.||.|+-.|||+--.
T Consensus 23 ~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 23 QLPADIQEEILSGKS 37 (48)
T ss_dssp TSCHHHHHHHTTCCC
T ss_pred HCcHHHHHHHHhcch
Confidence 699999999998644
Done!