Query 043461
Match_columns 196
No_of_seqs 187 out of 1396
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:42:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 6.1E-54 2.1E-58 352.8 11.0 162 8-172 24-185 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.9E-52 6.5E-57 337.7 10.3 147 17-167 6-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 3.1E-36 1.1E-40 237.2 2.1 136 15-158 16-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 3E-30 1E-34 202.1 0.1 130 16-155 7-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 5E-26 1.7E-30 178.3 3.0 105 16-123 2-111 (149)
6 2js7_A Myeloid differentiation 99.9 2.5E-25 8.7E-30 176.4 5.4 100 17-118 14-116 (160)
7 1t3g_A X-linked interleukin-1 99.9 9E-25 3.1E-29 173.1 6.6 103 18-120 1-115 (159)
8 2j67_A TOLL like receptor 10; 99.9 4.5E-25 1.5E-29 177.9 4.6 106 16-123 32-141 (178)
9 3j0a_A TOLL-like receptor 5; m 99.7 1.6E-18 5.5E-23 165.9 7.3 103 16-120 667-775 (844)
10 1eiw_A Hypothetical protein MT 98.1 3.6E-06 1.2E-10 62.5 5.4 72 18-114 3-74 (111)
11 3hyn_A Putative signal transdu 97.0 0.0029 1E-07 50.7 8.0 94 27-127 27-130 (189)
12 2f62_A Nucleoside 2-deoxyribos 86.8 3.3 0.00011 31.9 8.2 70 33-102 26-98 (161)
13 2khz_A C-MYC-responsive protei 85.6 7.7 0.00026 29.6 9.8 82 17-102 9-103 (165)
14 2yvq_A Carbamoyl-phosphate syn 81.0 3.7 0.00013 30.7 6.1 62 22-85 27-106 (143)
15 4fyk_A Deoxyribonucleoside 5'- 76.0 11 0.00036 28.9 7.4 77 21-101 4-93 (152)
16 3ehd_A Uncharacterized conserv 73.7 22 0.00076 27.2 8.8 75 34-114 20-104 (162)
17 2jug_A TUBC protein; docking d 57.4 8.5 0.00029 25.6 3.0 38 37-74 8-48 (78)
18 1s2d_A Purine trans deoxyribos 49.8 76 0.0026 24.2 7.8 79 21-102 9-109 (167)
19 2d00_A V-type ATP synthase sub 43.5 68 0.0023 22.7 6.2 52 41-98 16-67 (109)
20 1wu7_A Histidyl-tRNA synthetas 37.5 64 0.0022 27.9 6.3 59 19-83 332-391 (434)
21 3net_A Histidyl-tRNA synthetas 35.7 52 0.0018 29.0 5.5 62 18-84 370-431 (465)
22 1v95_A Nuclear receptor coacti 35.1 59 0.002 24.0 4.8 47 32-80 20-67 (130)
23 3dt5_A Uncharacterized protein 34.8 15 0.0005 26.3 1.3 44 84-127 36-82 (135)
24 3aon_B V-type sodium ATPase su 34.7 40 0.0014 24.2 3.8 61 42-113 16-76 (115)
25 1f8y_A Nucleoside 2-deoxyribos 34.7 1.2E+02 0.0041 22.7 6.7 68 33-101 18-105 (157)
26 1evl_A Threonyl-tRNA synthetas 34.5 51 0.0017 28.2 5.1 60 18-83 297-357 (401)
27 1sc3_B Interleukin-1 beta conv 34.0 13 0.00044 25.5 0.9 25 23-47 21-45 (88)
28 3ikl_A DNA polymerase subunit 33.5 53 0.0018 29.4 5.1 66 18-87 349-417 (459)
29 3hjn_A DTMP kinase, thymidylat 31.6 45 0.0016 25.6 3.9 31 23-53 2-34 (197)
30 2ql9_B Caspase-7; cysteine pro 30.2 15 0.00051 25.5 0.7 25 23-47 23-47 (97)
31 3lc0_A Histidyl-tRNA synthetas 30.0 85 0.0029 27.7 5.8 61 18-83 360-420 (456)
32 1byr_A Protein (endonuclease); 29.2 75 0.0026 22.6 4.6 26 60-85 12-37 (155)
33 1qtn_B Caspase-8; apoptosis, d 28.8 14 0.00049 25.6 0.4 24 24-47 26-49 (95)
34 2i4r_A V-type ATP synthase sub 28.1 1.5E+02 0.0052 20.6 5.9 44 41-87 22-65 (102)
35 1qe0_A Histidyl-tRNA synthetas 27.6 55 0.0019 28.0 4.1 60 18-83 328-388 (420)
36 2dko_B Caspase-3; low barrier 27.4 18 0.00061 25.5 0.7 30 18-47 15-53 (103)
37 1nj1_A PROR, proline-tRNA synt 27.1 41 0.0014 30.1 3.3 45 18-62 313-361 (501)
38 4g85_A Histidine-tRNA ligase, 27.1 1.1E+02 0.0038 27.1 6.1 63 17-83 417-479 (517)
39 4g84_A Histidine--tRNA ligase, 26.6 1E+02 0.0036 26.5 5.8 60 18-82 365-425 (464)
40 1pyo_B Caspase-2; apoptosis, c 26.2 19 0.00066 25.4 0.7 25 23-47 27-51 (105)
41 2i4l_A Proline-tRNA ligase; al 25.9 27 0.00091 30.8 1.8 61 19-84 365-428 (458)
42 1bax_A M-PMV MA, M-PMV matrix 25.0 38 0.0013 23.8 2.1 18 33-50 9-26 (94)
43 1htt_A Histidyl-tRNA synthetas 23.2 75 0.0026 27.2 4.1 58 18-80 326-386 (423)
44 2j3l_A Prolyl-tRNA synthetase; 22.7 91 0.0031 28.0 4.7 61 19-84 470-533 (572)
45 2zt5_A Glycyl-tRNA synthetase; 22.3 1.2E+02 0.0042 28.3 5.6 62 19-84 559-621 (693)
46 2xzd_B Caspase-3; hydrolase-pr 22.1 27 0.00094 25.3 0.9 25 23-47 28-52 (118)
47 4e51_A Histidine--tRNA ligase; 22.1 92 0.0031 27.4 4.5 65 18-83 353-417 (467)
48 1hc7_A Prolyl-tRNA synthetase; 21.9 67 0.0023 28.5 3.6 45 19-63 287-336 (477)
49 4a6h_A Phosphatidylinositol 4, 20.9 55 0.0019 23.3 2.4 20 143-162 101-120 (120)
50 2yry_A Pleckstrin homology dom 20.3 67 0.0023 21.8 2.7 19 143-161 103-121 (122)
51 1nyr_A Threonyl-tRNA synthetas 20.2 90 0.0031 28.7 4.2 59 19-82 545-604 (645)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=6.1e-54 Score=352.80 Aligned_cols=162 Identities=38% Similarity=0.728 Sum_probs=144.7
Q ss_pred CCccccCCCCceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccC
Q 043461 8 SSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYAS 87 (196)
Q Consensus 8 s~s~~~~~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~ 87 (196)
|++++...+.++|||||||||+|+|++|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|||||++|++
T Consensus 24 s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~ 103 (204)
T 3ozi_A 24 STNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYAD 103 (204)
T ss_dssp ----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGG
T ss_pred CCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEccccc
Confidence 34444445789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcccCCCCeEEEEEeecCCccccccCcchHHHHHHHHHHHhccCHHHHHHHHHHHHHhhcccceeec
Q 043461 88 SPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQ 167 (196)
Q Consensus 88 S~wCl~EL~~i~~~~~~~~~~~ViPVfy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~ 167 (196)
|+||++||++|++|+++.++++||||||+|+|++||+|+| .||++|.+|++++. ++++++||.||++||+++||++.
T Consensus 104 S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g-~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~ 180 (204)
T 3ozi_A 104 SKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTG-CYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIG 180 (204)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCT-THHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEEC
T ss_pred CcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccc-cHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecC
Confidence 9999999999999986436899999999999999999999 99999999998764 68999999999999999999998
Q ss_pred CCCCC
Q 043461 168 DSGDV 172 (196)
Q Consensus 168 ~~~~~ 172 (196)
++.+-
T Consensus 181 ~~~~e 185 (204)
T 3ozi_A 181 KNDKQ 185 (204)
T ss_dssp TTSCH
T ss_pred CCCCH
Confidence 87643
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-52 Score=337.73 Aligned_cols=147 Identities=47% Similarity=0.778 Sum_probs=128.0
Q ss_pred CceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHH
Q 043461 17 QSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELA 96 (196)
Q Consensus 17 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~ 96 (196)
+++|||||||||+|+|++|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||++||+
T Consensus 6 ~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~ 85 (176)
T 3jrn_A 6 ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELV 85 (176)
T ss_dssp -CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHH
T ss_pred CCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCeEEEEEeecCCccccccCcchHHHHHHHHHHHhccCHHHHHHHHHHHHHhhcccceeec
Q 043461 97 KIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQ 167 (196)
Q Consensus 97 ~i~~~~~~~~~~~ViPVfy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~ 167 (196)
+|++|.++ ++++||||||+|+|++||+|+| .||++|.+|+++ .+++++++||.||++||+++||++.
T Consensus 86 ~i~~~~~~-~~~~ViPIfy~V~ps~Vr~q~g-~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 86 TIMDFEKK-GSITVMPIFYGVEPNHVRWQTG-VLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHT-TSCEEEEEECSSCHHHHHHTCT-HHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHhhhcc-CCCEEEEEEecCCHHHhhhccC-cHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 99999987 8999999999999999999999 999999999987 4689999999999999999999995
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=3.1e-36 Score=237.16 Aligned_cols=136 Identities=18% Similarity=0.311 Sum_probs=119.5
Q ss_pred CCCceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHH
Q 043461 15 LLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDE 94 (196)
Q Consensus 15 ~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~E 94 (196)
.+.++|||||||+++| +..|+.+|+.+|+++|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||++|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 3578999999999999 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCeEEEEEeecCCccccccCcchHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 043461 95 LAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRV 158 (196)
Q Consensus 95 L~~i~~~~~~~~~~~ViPVfy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v 158 (196)
|..+++|... ++++||||||+++|++|++|.| .|+++|..... ...+.++-+.|.++
T Consensus 95 l~~~~~~~~~-~~~~iiPV~~~v~p~~v~~~~~-~~~~~~~~~~~-----~~~~~~ia~~l~~l 151 (154)
T 3h16_A 95 LDGLFQLESS-GRSRILPIWHKVSKDEVASFSP-TMADKLAFNTS-----TKSVDEIVADLMAI 151 (154)
T ss_dssp HHHHTCCCTT-SCCCEEEEEESCCTGGGTTTCC-CCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCEEEEEEecCCHHHHhhCCc-cHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence 9999999877 7889999999999999999999 99988753322 23455555555544
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.95 E-value=3e-30 Score=202.08 Aligned_cols=130 Identities=19% Similarity=0.314 Sum_probs=93.1
Q ss_pred CCceeeEEEccccccCcccHHHHHHHHHHc--CCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHH
Q 043461 16 LQSKYDVFLSFRGEDTRNNFTDHLHAALIR--NGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLD 93 (196)
Q Consensus 16 ~~~~yDVFISy~~~D~~~~fv~~L~~~L~~--~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~ 93 (196)
.++.|||||||+++|++ |+.+|+.+|++ .|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||+.
T Consensus 7 ~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 7 WSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp TSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 46789999999999964 89999999998 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCeEEEEEeecCCccc----cccCcc---hHHHHHHHHHHHhccCHHHHHHHHHHH
Q 043461 94 ELAKIVECGNKRKDRKVFAVFYGVDPADA----RTQKGE---DFERVFAKYEEEFKENQEKVLKWRAAF 155 (196)
Q Consensus 94 EL~~i~~~~~~~~~~~ViPVfy~v~psdV----r~q~g~---~f~~~f~~~~~~~~~~~~~v~~W~~AL 155 (196)
|+..++.+... +..+||||||+++++++ +....- .....|.++ .+.|.+|+.||
T Consensus 85 El~~al~~~~~-~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~ 145 (146)
T 3ub2_A 85 QMLQALTEAPG-AEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHTSSS-SSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred HHHHHHHHHhh-cCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence 99999998744 34478899999886554 443310 233444433 47789999876
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.91 E-value=5e-26 Score=178.33 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=93.2
Q ss_pred CCceeeEEEccccccCcccHHHH-HHHHHHcC--CceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHH
Q 043461 16 LQSKYDVFLSFRGEDTRNNFTDH-LHAALIRN--GFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCL 92 (196)
Q Consensus 16 ~~~~yDVFISy~~~D~~~~fv~~-L~~~L~~~--Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl 92 (196)
.++.|||||||+++|. .|+.+ |..+|+++ |+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3678999999999996 69986 99999986 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-cccCCCCeEEEEEee-cCCcccc
Q 043461 93 DELAKIVEC-GNKRKDRKVFAVFYG-VDPADAR 123 (196)
Q Consensus 93 ~EL~~i~~~-~~~~~~~~ViPVfy~-v~psdVr 123 (196)
.|+..++.+ .+. +++.||||||+ +++..+.
T Consensus 80 ~El~~a~~~~~~~-~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDE-NNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGG-GTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhc-CCCEEEEEEecCCChhhcC
Confidence 999999864 444 67789999995 5554454
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.91 E-value=2.5e-25 Score=176.44 Aligned_cols=100 Identities=17% Similarity=0.262 Sum_probs=90.7
Q ss_pred CceeeEEEccccccCcccHHHHHHHHHHcC--CceeEecCccCcCCCcccHHHHHHhh-hcceEEEEeeccccCChhHHH
Q 043461 17 QSKYDVFLSFRGEDTRNNFTDHLHAALIRN--GFIAFKDDETLERGNEISSELSQAIE-ESNVSIVILSKNYASSPWCLD 93 (196)
Q Consensus 17 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~~l~~G~~i~~~i~~aI~-~S~i~IvV~S~~y~~S~wCl~ 93 (196)
++.|||||||+++| ..||.+|..+|+++ |+++|+|++++.+|+.+.++|.++|+ +|+++|+|+|++|++|.||+.
T Consensus 14 ~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~ 91 (160)
T 2js7_A 14 PERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF 91 (160)
T ss_dssp TTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred CcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence 57899999999999 47999999999985 69999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHHhcccCCCCeEEEEEeecC
Q 043461 94 ELAKIVECGNKRKDRKVFAVFYGVD 118 (196)
Q Consensus 94 EL~~i~~~~~~~~~~~ViPVfy~v~ 118 (196)
|+..++++...+++++||||+|+.-
T Consensus 92 El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 92 QTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHHccCCCEEEEEEEccc
Confidence 9999998863325678999999754
No 7
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.90 E-value=9e-25 Score=173.09 Aligned_cols=103 Identities=19% Similarity=0.321 Sum_probs=90.5
Q ss_pred ceeeEEEccccccC---------cccHHHHHHH-HHH-cCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeecccc
Q 043461 18 SKYDVFLSFRGEDT---------RNNFTDHLHA-ALI-RNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYA 86 (196)
Q Consensus 18 ~~yDVFISy~~~D~---------~~~fv~~L~~-~L~-~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~ 86 (196)
+.|||||||+++|+ ++.||.+|.. .|+ +.|+++|+|++++.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 3679988665 699 799999999999999999999999999999999999999997
Q ss_pred -CChhHHHHHHHHHHhcccCCCCeEEEEEeecCCc
Q 043461 87 -SSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120 (196)
Q Consensus 87 -~S~wCl~EL~~i~~~~~~~~~~~ViPVfy~v~ps 120 (196)
.|.||+.|+..++.+.-..+++.||||+|.-.+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999886332778999999875443
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.90 E-value=4.5e-25 Score=177.94 Aligned_cols=106 Identities=18% Similarity=0.307 Sum_probs=88.9
Q ss_pred CCceeeEEEccccccCcccHHHH-HHHHHHc--CCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHH
Q 043461 16 LQSKYDVFLSFRGEDTRNNFTDH-LHAALIR--NGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCL 92 (196)
Q Consensus 16 ~~~~yDVFISy~~~D~~~~fv~~-L~~~L~~--~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl 92 (196)
.++.|||||||+++|+ .||.. |..+|++ +|+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~ 109 (178)
T 2j67_A 32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH 109 (178)
T ss_dssp CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence 5678999999999995 69975 9999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCeEEEEEee-cCCcccc
Q 043461 93 DELAKIVECGNKRKDRKVFAVFYG-VDPADAR 123 (196)
Q Consensus 93 ~EL~~i~~~~~~~~~~~ViPVfy~-v~psdVr 123 (196)
.|+..++.+..+++++.||||||+ +.+.++.
T Consensus 110 ~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp 141 (178)
T 2j67_A 110 YEFYFAHHNLFHENSDHIILILLEPIPFYCIP 141 (178)
T ss_dssp THHHHTTCC-------CEEEEESSCCCGGGSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChHHCC
Confidence 999999975433267889999996 4443443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=165.85 Aligned_cols=103 Identities=19% Similarity=0.323 Sum_probs=92.1
Q ss_pred CCceeeEEEccccccCcccHH-HHHHHHHHc-----CCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCCh
Q 043461 16 LQSKYDVFLSFRGEDTRNNFT-DHLHAALIR-----NGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSP 89 (196)
Q Consensus 16 ~~~~yDVFISy~~~D~~~~fv-~~L~~~L~~-----~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~ 89 (196)
..+.|||||||+++|. .|| ..|...|++ .|+++|++++|+.+|+.+.++|.++|++||..|+|+|++|+.|+
T Consensus 667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 4679999999999995 587 779999985 58999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcccCCCCeEEEEEeecCCc
Q 043461 90 WCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120 (196)
Q Consensus 90 wCl~EL~~i~~~~~~~~~~~ViPVfy~v~ps 120 (196)
||..|+..++.+.-++++++||||||+..|.
T Consensus 745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp STTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 9999999998776433788999999975543
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.10 E-value=3.6e-06 Score=62.48 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=53.8
Q ss_pred ceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHHH
Q 043461 18 SKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAK 97 (196)
Q Consensus 18 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~~ 97 (196)
..|.|||||..+|. ...|...|.+.|+.. .| ..|+.|.+.||+.++....|+||..|+..
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 57999999999982 334444444445422 22 67899999999999999999999999988
Q ss_pred HHHhcccCCCCeEEEEE
Q 043461 98 IVECGNKRKDRKVFAVF 114 (196)
Q Consensus 98 i~~~~~~~~~~~ViPVf 114 (196)
+.+ .+..|+-|.
T Consensus 63 A~~-----~gkpIigV~ 74 (111)
T 1eiw_A 63 ARK-----SSKPIITVR 74 (111)
T ss_dssp HTT-----TTCCEEEEC
T ss_pred HHH-----cCCCEEEEE
Confidence 876 445577665
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.95 E-value=0.0029 Score=50.67 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=66.1
Q ss_pred ccccCcccHHHHHHHHHHcCCceeEecCccC----cC----CCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHHHH
Q 043461 27 RGEDTRNNFTDHLHAALIRNGFIAFKDDETL----ER----GNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKI 98 (196)
Q Consensus 27 ~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l----~~----G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~~i 98 (196)
..+|. .....|..--.+..+-.|.|-.+. .- -..|...|.+.|+.|+.+|+++|++...|.|...|+..+
T Consensus 27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 44553 355667666666666666775433 22 234677888999999999999999999999999999999
Q ss_pred H-HhcccCCCCeEEEEEeecC-CccccccCc
Q 043461 99 V-ECGNKRKDRKVFAVFYGVD-PADARTQKG 127 (196)
Q Consensus 99 ~-~~~~~~~~~~ViPVfy~v~-psdVr~q~g 127 (196)
+ + .+..||-|.-+-. .+++..-.|
T Consensus 105 i~~-----~~~PII~Vy~~~~~~~~i~~~~g 130 (189)
T 3hyn_A 105 IGT-----KGLPVIVIYPDYDKKSDIVDSNG 130 (189)
T ss_dssp TTT-----TCCCEEEEETTCCSGGGTBCTTS
T ss_pred HHh-----cCCcEEEEECCccccchhhhccc
Confidence 8 5 4566888875422 334554344
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=86.79 E-value=3.3 Score=31.91 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHHcCCceeEecCccCc-CCCcccHHHHHHhhhcceEEEEeec--cccCChhHHHHHHHHHHhc
Q 043461 33 NNFTDHLHAALIRNGFIAFKDDETLE-RGNEISSELSQAIEESNVSIVILSK--NYASSPWCLDELAKIVECG 102 (196)
Q Consensus 33 ~~fv~~L~~~L~~~Gi~vf~d~~~l~-~G~~i~~~i~~aI~~S~i~IvV~S~--~y~~S~wCl~EL~~i~~~~ 102 (196)
..+...+...|++.|+.+|.-.++-. ....+...-.++|++|++.|++++| .-..+.-...|+..+....
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg 98 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN 98 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC
Confidence 36889999999999999988533211 2233444457899999999999996 3334556889999988743
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=85.64 E-value=7.7 Score=29.60 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=52.7
Q ss_pred CceeeEEEccccc--cCcccHHHHHHHHHHcCCceeEecCcc----CcCCC-------cccHHHHHHhhhcceEEEEeec
Q 043461 17 QSKYDVFLSFRGE--DTRNNFTDHLHAALIRNGFIAFKDDET----LERGN-------EISSELSQAIEESNVSIVILSK 83 (196)
Q Consensus 17 ~~~yDVFISy~~~--D~~~~fv~~L~~~L~~~Gi~vf~d~~~----l~~G~-------~i~~~i~~aI~~S~i~IvV~S~ 83 (196)
+++..|||+=.-. .........+...|++.| .|+.+..- -..|. .+...-.+.|++|++.|++++
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~- 86 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT- 86 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence 3456799973222 111224588999999999 87654321 11221 122333578999999999997
Q ss_pred cccCChhHHHHHHHHHHhc
Q 043461 84 NYASSPWCLDELAKIVECG 102 (196)
Q Consensus 84 ~y~~S~wCl~EL~~i~~~~ 102 (196)
..+.-+..|+..+....
T Consensus 87 --~~d~Gt~~EiGyA~alg 103 (165)
T 2khz_A 87 --QPSLGVGYELGRAVALG 103 (165)
T ss_dssp --SCCHHHHHHHHHHHHTC
T ss_pred --CCCCCHHHHHHHHHHCC
Confidence 55777999999998743
No 14
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=80.98 E-value=3.7 Score=30.72 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=39.2
Q ss_pred EEEccccccCcccHHHHHHHHHHcCCceeEec--------Ccc-----CcC---C-C-cccHHHHHHhhhcceEEEEeec
Q 043461 22 VFLSFRGEDTRNNFTDHLHAALIRNGFIAFKD--------DET-----LER---G-N-EISSELSQAIEESNVSIVILSK 83 (196)
Q Consensus 22 VFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d--------~~~-----l~~---G-~-~i~~~i~~aI~~S~i~IvV~S~ 83 (196)
||||.+..|. .-+-.+...|...|++++-- +.. +.. | + .-.++|.+.|++-++-+||..|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999988763 33445677888888877621 111 111 1 1 0015688888888888888887
Q ss_pred cc
Q 043461 84 NY 85 (196)
Q Consensus 84 ~y 85 (196)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 15
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=76.01 E-value=11 Score=28.85 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=50.5
Q ss_pred eEEEc--cccccCcccHHHHHHHHHHcCCceeEecC---ccC-cCCC-------cccHHHHHHhhhcceEEEEeeccccC
Q 043461 21 DVFLS--FRGEDTRNNFTDHLHAALIRNGFIAFKDD---ETL-ERGN-------EISSELSQAIEESNVSIVILSKNYAS 87 (196)
Q Consensus 21 DVFIS--y~~~D~~~~fv~~L~~~L~~~Gi~vf~d~---~~l-~~G~-------~i~~~i~~aI~~S~i~IvV~S~~y~~ 87 (196)
.|||+ +++.+....+...+.+.|++.| .|+... .++ ..|+ .+...-.++|++|++.|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 45664 3443323357799999999999 675322 111 1222 245556778999999999988 55
Q ss_pred ChhHHHHHHHHHHh
Q 043461 88 SPWCLDELAKIVEC 101 (196)
Q Consensus 88 S~wCl~EL~~i~~~ 101 (196)
|.-...|+..+...
T Consensus 80 d~Gt~~EiG~A~al 93 (152)
T 4fyk_A 80 SLGVGYELGRAVAL 93 (152)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc
Confidence 77788899999874
No 16
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=73.71 E-value=22 Score=27.23 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHcC--CceeEecCccCc----CCC----cccHHHHHHhhhcceEEEEeeccccCChhHHHHHHHHHHhcc
Q 043461 34 NFTDHLHAALIRN--GFIAFKDDETLE----RGN----EISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGN 103 (196)
Q Consensus 34 ~fv~~L~~~L~~~--Gi~vf~d~~~l~----~G~----~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~~i~~~~~ 103 (196)
.+...+.++|+++ |+.+|.-.+.-. ++. .+...-.++|++|++.|.++. ....+..+..|+..+...
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~-- 96 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK-- 96 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC--
Confidence 4778899999875 899987543321 122 233444567999999999995 344678899999999873
Q ss_pred cCCCCeEEEEE
Q 043461 104 KRKDRKVFAVF 114 (196)
Q Consensus 104 ~~~~~~ViPVf 114 (196)
+..|+.+.
T Consensus 97 ---gkPVi~~~ 104 (162)
T 3ehd_A 97 ---GIPVVALY 104 (162)
T ss_dssp ---TCCEEEEC
T ss_pred ---CCEEEEEE
Confidence 34466653
No 17
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=57.39 E-value=8.5 Score=25.63 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCceeEecCccCc---CCCcccHHHHHHhhhc
Q 043461 37 DHLHAALIRNGFIAFKDDETLE---RGNEISSELSQAIEES 74 (196)
Q Consensus 37 ~~L~~~L~~~Gi~vf~d~~~l~---~G~~i~~~i~~aI~~S 74 (196)
..|...|.++||..|.|.+.+. +-..+.+++...+.+.
T Consensus 8 ~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~ 48 (78)
T 2jug_A 8 GALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGA 48 (78)
T ss_dssp HHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHH
Confidence 4577899999999999987764 3345677777777653
No 18
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=49.80 E-value=76 Score=24.15 Aligned_cols=79 Identities=9% Similarity=0.101 Sum_probs=52.9
Q ss_pred eEEEc---cccccCcccHHHHHHHHHHcC--CceeEecCcc-C--------cCC--------CcccHHHHHHhhhcceEE
Q 043461 21 DVFLS---FRGEDTRNNFTDHLHAALIRN--GFIAFKDDET-L--------ERG--------NEISSELSQAIEESNVSI 78 (196)
Q Consensus 21 DVFIS---y~~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~~-l--------~~G--------~~i~~~i~~aI~~S~i~I 78 (196)
.||+. |+..+ ..+...+...|++. |+.+|.-.++ . ..| ..|...-.++|++|++.|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 46665 33332 35778999999999 8888875431 1 111 123345557899999999
Q ss_pred EEeeccccCChhHHHHHHHHHHhc
Q 043461 79 VILSKNYASSPWCLDELAKIVECG 102 (196)
Q Consensus 79 vV~S~~y~~S~wCl~EL~~i~~~~ 102 (196)
.++...-. +.-...|+..+....
T Consensus 87 A~ldg~~~-D~GTa~EiGyA~alg 109 (167)
T 1s2d_A 87 FLYDMDQL-DDGSAFXIGFMRAMH 109 (167)
T ss_dssp EEEESSSC-CHHHHHHHHHHHHTT
T ss_pred EECCCCCC-CCCceeehhhHhhCC
Confidence 99987554 456788999988743
No 19
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=43.50 E-value=68 Score=22.67 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHHHH
Q 043461 41 AALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKI 98 (196)
Q Consensus 41 ~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~~i 98 (196)
..+.-.|+.+|.... .+++...+.+.+++-++.|++++++.+. .+.+++...
T Consensus 16 ~GFrLaGi~~~~v~~----~ee~~~~~~~l~~~~digIIlIte~~a~--~i~~~i~~~ 67 (109)
T 2d00_A 16 QGFRLAGLEGYGASS----AEEAQSLLETLVERGGYALVAVDEALLP--DPERAVERL 67 (109)
T ss_dssp HHHHHTTSEEEECSS----HHHHHHHHHHHHHHCCCSEEEEETTTCS--CHHHHHHHH
T ss_pred HHHHHcCCeEEEeCC----HHHHHHHHHHHhhCCCeEEEEEeHHHHH--hhHHHHHHH
Confidence 445667998885432 3455566677777789999999999988 344444433
No 20
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=37.48 E-value=64 Score=27.85 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=37.9
Q ss_pred eeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhh-hcceEEEEeec
Q 043461 19 KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIE-ESNVSIVILSK 83 (196)
Q Consensus 19 ~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~-~S~i~IvV~S~ 83 (196)
.+||+|-.-+++. ...+..|...|.++|++|-+|.++ ..+...+..|-. +.... +|+.+
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~~~~-iiiG~ 391 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIME----RGLSAQLKYASAIGADFA-VIFGE 391 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCSC----CCHHHHHHHHHHTTCSEE-EEEEH
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCCEE-EEECc
Confidence 4889866545443 457889999999999999998753 344444444433 44444 44443
No 21
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=35.66 E-value=52 Score=28.97 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=40.9
Q ss_pred ceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeecc
Q 043461 18 SKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKN 84 (196)
Q Consensus 18 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~ 84 (196)
..+||+|-.-+++. ...+..+...|+++|++|-+|.++ ..+...+..|-+.---.++|+.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~~----~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFEK----RQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCSC----CCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeCC----CCHHHHHHHHHHcCCCEEEEECch
Confidence 35799976655543 357889999999999999998652 344445555544333355555554
No 22
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=35.10 E-value=59 Score=24.01 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhh-hcceEEEE
Q 043461 32 RNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIE-ESNVSIVI 80 (196)
Q Consensus 32 ~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~-~S~i~IvV 80 (196)
...++..+...|...|+++=+|.. ..++.+...|.++-. +....|||
T Consensus 20 ~~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 20 TKDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp GGHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 357999999999999999999863 124555555555433 34444443
No 23
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=34.82 E-value=15 Score=26.33 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=27.7
Q ss_pred cccCChhHHHHHHHHHHhcccCCC---CeEEEEEeecCCccccccCc
Q 043461 84 NYASSPWCLDELAKIVECGNKRKD---RKVFAVFYGVDPADARTQKG 127 (196)
Q Consensus 84 ~y~~S~wCl~EL~~i~~~~~~~~~---~~ViPVfy~v~psdVr~q~g 127 (196)
.|+--...-+|+..|+.|++--.+ .+|+|.-++.....+..-..
T Consensus 36 syvytaqtedeietiitcrrylagnnllrvlpmhfkfkadkiagsan 82 (135)
T 3dt5_A 36 SYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIAGSAN 82 (135)
T ss_dssp SSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECCTTCSS
T ss_pred hHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchhccccc
Confidence 455556678999999999752122 36788766655444443333
No 24
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=34.70 E-value=40 Score=24.22 Aligned_cols=61 Identities=8% Similarity=0.209 Sum_probs=38.0
Q ss_pred HHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHHHHHHhcccCCCCeEEEE
Q 043461 42 ALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAV 113 (196)
Q Consensus 42 ~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~~ViPV 113 (196)
.++-.|+.+|.... -+++...+.+.+++ ++.|++++++.+.. +.+++.. ++ +. ....|++|
T Consensus 16 GFrLaGie~~~v~~----~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~-~~--~~-~~P~IveI 76 (115)
T 3aon_B 16 PFRLFGFDVQHGTT----KTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER-YK--GQ-LTPAIILI 76 (115)
T ss_dssp GGGGGTCEEECCCS----HHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH-HH--TS-SSCEEEEE
T ss_pred HHHHcCCeEEEeCC----HHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH-Hh--CC-CCCEEEEE
Confidence 34556888875432 24555566677777 99999999998863 4455544 33 22 24456655
No 25
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=34.69 E-value=1.2e+02 Score=22.74 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHHcCCc----eeEecCccCc---------C---C----CcccHHHHHHhhhcceEEEEeeccccCChhHH
Q 043461 33 NNFTDHLHAALIRNGF----IAFKDDETLE---------R---G----NEISSELSQAIEESNVSIVILSKNYASSPWCL 92 (196)
Q Consensus 33 ~~fv~~L~~~L~~~Gi----~vf~d~~~l~---------~---G----~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl 92 (196)
......+..+|+..|. .+|.-.++-. . + ..|...-.++|++|++.|.++...- .+.-..
T Consensus 18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~-~D~GT~ 96 (157)
T 1f8y_A 18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGLG 96 (157)
T ss_dssp HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHHH
T ss_pred HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCC-CCccHH
Confidence 3577899999999985 6776533211 1 1 1233445578999999999998443 345678
Q ss_pred HHHHHHHHh
Q 043461 93 DELAKIVEC 101 (196)
Q Consensus 93 ~EL~~i~~~ 101 (196)
.|+..+...
T Consensus 97 ~EiGyA~A~ 105 (157)
T 1f8y_A 97 MELGYALSQ 105 (157)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 899998873
No 26
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=34.51 E-value=51 Score=28.22 Aligned_cols=60 Identities=10% Similarity=0.150 Sum_probs=39.1
Q ss_pred ceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhh-hcceEEEEeec
Q 043461 18 SKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIE-ESNVSIVILSK 83 (196)
Q Consensus 18 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~-~S~i~IvV~S~ 83 (196)
..+||+|---+++ ....+..|...|++.|++|-+|+++ ..+...+..|-. +.... +|+.+
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~k~~~A~~~g~p~~-iiiG~ 357 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYM-LVCGD 357 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECCS----SCHHHHHHHHHHTTCSEE-EEECH
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHhcCCCEE-EEECc
Confidence 3478887654443 3467889999999999999998753 345555555543 34444 44433
No 27
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=34.03 E-value=13 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=19.2
Q ss_pred EEccccccCcccHHHHHHHHHHcCC
Q 043461 23 FLSFRGEDTRNNFTDHLHAALIRNG 47 (196)
Q Consensus 23 FISy~~~D~~~~fv~~L~~~L~~~G 47 (196)
|.|||+......|+..|.+.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 4567777666779999999998754
No 28
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=33.55 E-value=53 Score=29.37 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=36.8
Q ss_pred ceeeEEEccccccCcccHHHHHHHHHHcCCceeE--ecCc-cCcCCCcccHHHHHHhhhcceEEEEeeccccC
Q 043461 18 SKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAF--KDDE-TLERGNEISSELSQAIEESNVSIVILSKNYAS 87 (196)
Q Consensus 18 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf--~d~~-~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~ 87 (196)
.+.-|.++-...|....++..|+..|++.||+|. +|++ +-..|.. +.+|=..---.+||+.++-+.
T Consensus 349 ~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK----~r~Ad~iGiPy~IiVG~kEle 417 (459)
T 3ikl_A 349 IKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQL----YSKYDEMSILFTVLVTETTLE 417 (459)
T ss_dssp CCEEEEESSCCSTTHHHHHHHHHHHHHHTSCCEECGGGSSSCCTTHHH----HHHHGGGTCSEEEEECTTSTT
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHHHH----HHHHHHcCCCEEEEECchhhh
Confidence 3444444321124445789999999999999999 6664 3333433 333322222245555555433
No 29
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=31.62 E-value=45 Score=25.59 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.3
Q ss_pred EEccccccC--cccHHHHHHHHHHcCCceeEec
Q 043461 23 FLSFRGEDT--RNNFTDHLHAALIRNGFIAFKD 53 (196)
Q Consensus 23 FISy~~~D~--~~~fv~~L~~~L~~~Gi~vf~d 53 (196)
||.+-|-|. ..+-+..|.+.|+.+|+++..-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 888888885 3567889999999999988654
No 30
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=30.21 E-value=15 Score=25.49 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=17.7
Q ss_pred EEccccccCcccHHHHHHHHHHcCC
Q 043461 23 FLSFRGEDTRNNFTDHLHAALIRNG 47 (196)
Q Consensus 23 FISy~~~D~~~~fv~~L~~~L~~~G 47 (196)
|.|||+.+....|+..|.+.|++.|
T Consensus 23 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 23 YYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEeeecCCCCCeeHHHHHHHHHHhC
Confidence 3455555556678999999997754
No 31
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=29.97 E-value=85 Score=27.68 Aligned_cols=61 Identities=15% Similarity=-0.000 Sum_probs=39.7
Q ss_pred ceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeec
Q 043461 18 SKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSK 83 (196)
Q Consensus 18 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~ 83 (196)
...||||..-+++.. .-+-.+...|+++|++|-++.. +..+..++..|-+.---.++|+.+
T Consensus 360 ~~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiGe 420 (456)
T 3lc0_A 360 HVVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIILD----KKKVVQAFNYADRVGAVRAVLVAP 420 (456)
T ss_dssp CCEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEECH
T ss_pred CCCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEECC
Confidence 357888776566543 4567889999999999988753 234555666665543344555543
No 32
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=29.25 E-value=75 Score=22.61 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=15.0
Q ss_pred CCcccHHHHHHhhhcceEEEEeeccc
Q 043461 60 GNEISSELSQAIEESNVSIVILSKNY 85 (196)
Q Consensus 60 G~~i~~~i~~aI~~S~i~IvV~S~~y 85 (196)
++.+.+.+.+.|++++..|.+.++.+
T Consensus 12 ~~~~~~~~~~~i~~A~~~I~i~~~~~ 37 (155)
T 1byr_A 12 EGSARVLVLSAIDSAKTSIRMMAYSF 37 (155)
T ss_dssp TTHHHHHHHHHHHHCSSEEEEEESSB
T ss_pred CCcHHHHHHHHHHHHhhEEEEEEEEe
Confidence 34444556666666666666666544
No 33
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=28.84 E-value=14 Score=25.60 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=16.0
Q ss_pred EccccccCcccHHHHHHHHHHcCC
Q 043461 24 LSFRGEDTRNNFTDHLHAALIRNG 47 (196)
Q Consensus 24 ISy~~~D~~~~fv~~L~~~L~~~G 47 (196)
.|||..+....|+..|.+.|++.|
T Consensus 26 ~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 26 VSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHG
T ss_pred EEEecCCCCcHHHHHHHHHHHHhC
Confidence 334544555668899999887644
No 34
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=28.11 E-value=1.5e+02 Score=20.60 Aligned_cols=44 Identities=16% Similarity=0.378 Sum_probs=30.9
Q ss_pred HHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccC
Q 043461 41 AALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYAS 87 (196)
Q Consensus 41 ~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~ 87 (196)
-.++-.|+..+.+.. .-+++.+.+.+.+++.++.|++++++.+.
T Consensus 22 ~GFrLaGi~~~~~~~---~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 22 IGFMLAGISDIYEVT---SDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHTTCCCEEECC---SHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHcCCCcccCCC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 345567888776211 12455566777777789999999999886
No 35
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=27.61 E-value=55 Score=28.00 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=37.8
Q ss_pred ceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhh-hcceEEEEeec
Q 043461 18 SKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIE-ESNVSIVILSK 83 (196)
Q Consensus 18 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~-~S~i~IvV~S~ 83 (196)
..+||+|-.-+++. ...+..|+..|.+.|++|-+|.++ ..+...+..|-. +.. .++|+.+
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p-~~iiig~ 388 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYLQ----RKIKGQMKQADRLGAK-FTIVIGD 388 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCSC----CCHHHHHHHHHHTTCS-EEEEECH
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHHHcCCC-EEEEECc
Confidence 45788876544332 356788999999999999998753 344444444433 344 4444443
No 36
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=27.35 E-value=18 Score=25.46 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=19.9
Q ss_pred ceeeEEEcc---------ccccCcccHHHHHHHHHHcCC
Q 043461 18 SKYDVFLSF---------RGEDTRNNFTDHLHAALIRNG 47 (196)
Q Consensus 18 ~~yDVFISy---------~~~D~~~~fv~~L~~~L~~~G 47 (196)
..-|.+++| |+......|+..|.+.|++.|
T Consensus 15 ~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 15 VEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 345666655 444445668999999997654
No 37
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=27.11 E-value=41 Score=30.13 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=31.3
Q ss_pred ceeeEEEccc-c-cc--CcccHHHHHHHHHHcCCceeEecCccCcCCCc
Q 043461 18 SKYDVFLSFR-G-ED--TRNNFTDHLHAALIRNGFIAFKDDETLERGNE 62 (196)
Q Consensus 18 ~~yDVFISy~-~-~D--~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~ 62 (196)
..|+|+|--- + ++ .....+..|+..|++.||+|-+|+++-.+|..
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k 361 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRK 361 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 3578877543 3 31 33567899999999999999999864333443
No 38
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=27.06 E-value=1.1e+02 Score=27.13 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=39.0
Q ss_pred CceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeec
Q 043461 17 QSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSK 83 (196)
Q Consensus 17 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~ 83 (196)
....||||..-+++. ...+-.|...|.++||++-+|.. .+..+...+..|-+.---.+||+.+
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~viiG~ 479 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAIIGE 479 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS---SSCCHHHHHHHHHHHCCCEEEEECH
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEECC
Confidence 346899987655543 35677899999999999987642 2234554555554432224444443
No 39
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=26.58 E-value=1e+02 Score=26.54 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=38.3
Q ss_pred ceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhh-hcceEEEEee
Q 043461 18 SKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIE-ESNVSIVILS 82 (196)
Q Consensus 18 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~-~S~i~IvV~S 82 (196)
...||+|..-+++. ...+-.|...|.++||++-+|.. .+..+...+..|-+ +.+ .+||+.
T Consensus 365 ~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~-~~viiG 425 (464)
T 4g84_A 365 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIP-LVAIIG 425 (464)
T ss_dssp CCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC---SSCCHHHHHHHHHHHTCC-EEEECC
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCC-EEEEEC
Confidence 45789988766654 34677899999999999977642 23345445555544 334 444443
No 40
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=26.19 E-value=19 Score=25.38 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=17.4
Q ss_pred EEccccccCcccHHHHHHHHHHcCC
Q 043461 23 FLSFRGEDTRNNFTDHLHAALIRNG 47 (196)
Q Consensus 23 FISy~~~D~~~~fv~~L~~~L~~~G 47 (196)
|.|||..+....|+..|.+.|++.+
T Consensus 27 ~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 27 TAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHC
Confidence 3445555556678999999997654
No 41
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=25.85 E-value=27 Score=30.81 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=37.2
Q ss_pred eeeEEEcccc--ccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhh-hcceEEEEeecc
Q 043461 19 KYDVFLSFRG--EDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIE-ESNVSIVILSKN 84 (196)
Q Consensus 19 ~yDVFISy~~--~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~-~S~i~IvV~S~~ 84 (196)
.++|+|---+ .+.....+..|+..|++.|+.|.+|+++- .+...+.+|-. +... ++|+.++
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~----~~g~k~~~ad~~g~p~-~iivG~~ 428 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQ----RAGAKFATADLIGIPW-QIHVGPR 428 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSC----CHHHHHHHHHHHTCSE-EEEECHH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCC----CHHHHHHHHHhcCCCE-EEEECCc
Confidence 4788775322 12234678899999999999999998643 33334444422 3344 4444443
No 42
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=24.96 E-value=38 Score=23.80 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHHcCCcee
Q 043461 33 NNFTDHLHAALIRNGFIA 50 (196)
Q Consensus 33 ~~fv~~L~~~L~~~Gi~v 50 (196)
..|+..|...|.++||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 359999999999999998
No 43
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=23.22 E-value=75 Score=27.19 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=37.6
Q ss_pred ceeeEEEccccccCcccHHHHHHHHHHcC--CceeEecCccCcCCCcccHHHHHHhh-hcceEEEE
Q 043461 18 SKYDVFLSFRGEDTRNNFTDHLHAALIRN--GFIAFKDDETLERGNEISSELSQAIE-ESNVSIVI 80 (196)
Q Consensus 18 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~~l~~G~~i~~~i~~aI~-~S~i~IvV 80 (196)
..+||+|-.-+++ ....+..|...|+++ |++|-+|.++ ..+...+..|-. +....|+|
T Consensus 326 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 326 PVVDIYLVASGAD-TQSAAMALAERLRDELPGVKLMTNHGG----GNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp CSCSEEEEECSTT-HHHHHHHHHHHHHHHSTTCCEEECCSC----CCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcEEEEEcCHH-HHHHHHHHHHHHHcCCCCcEEEEeCCC----CCHHHHHHHHHHcCCCEEEEE
Confidence 3478988765544 345778999999999 9999998753 344444444433 44444443
No 44
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=22.71 E-value=91 Score=27.98 Aligned_cols=61 Identities=11% Similarity=0.259 Sum_probs=38.5
Q ss_pred eeeEEEcccc-c-cCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhh-hcceEEEEeecc
Q 043461 19 KYDVFLSFRG-E-DTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIE-ESNVSIVILSKN 84 (196)
Q Consensus 19 ~yDVFISy~~-~-D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~-~S~i~IvV~S~~ 84 (196)
.+||+|---+ + +.....+..|+..|++.|++|-+|+++ ..+...+.+|-. +.. .++|+.++
T Consensus 470 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~~----~~~g~k~~~a~~~g~p-~~iivG~~ 533 (572)
T 2j3l_A 470 PFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRN----ERAGVKFADADLIGCP-IRITVGKK 533 (572)
T ss_dssp SCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSS----CCHHHHHHHHHHHCCS-EEEEECGG
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCCC----CCHhHHHHHHHhcCCC-EEEEEccc
Confidence 3788876433 2 223457889999999999999999753 344445555533 344 44455544
No 45
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=22.32 E-value=1.2e+02 Score=28.34 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=39.5
Q ss_pred eeeEEEcccccc-CcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeecc
Q 043461 19 KYDVFLSFRGED-TRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKN 84 (196)
Q Consensus 19 ~yDVFISy~~~D-~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~ 84 (196)
.+||+|---+++ .....+..|...|++.||+|.+|+++ ..+...+.+|-..---.++|+.++
T Consensus 559 P~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~----~sigkk~k~Ad~~G~p~~IiIG~~ 621 (693)
T 2zt5_A 559 PFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSS----GSIGRRYARTDEIGVAFGVTIDFD 621 (693)
T ss_dssp SCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCC----SCHHHHHHHHHHTTCCEEEEECHH
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEEcch
Confidence 478887654443 23568899999999999999999753 345545555533322344444443
No 46
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=22.14 E-value=27 Score=25.25 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=17.5
Q ss_pred EEccccccCcccHHHHHHHHHHcCC
Q 043461 23 FLSFRGEDTRNNFTDHLHAALIRNG 47 (196)
Q Consensus 23 FISy~~~D~~~~fv~~L~~~L~~~G 47 (196)
|.|||.......|+..|.+.|++.+
T Consensus 28 ~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 28 YYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEeCCCCCccHHHHHHHHHHhC
Confidence 3455555555679999999997654
No 47
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=22.09 E-value=92 Score=27.45 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=40.6
Q ss_pred ceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeec
Q 043461 18 SKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSK 83 (196)
Q Consensus 18 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~ 83 (196)
...||+|-.-+++. ...+..+...|+++|++|-+|...-..+..+...+..|-+.---.++|+.+
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG~ 417 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGE 417 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEECc
Confidence 34788875544443 356788999999999999998641002456666666665433334445443
No 48
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=21.85 E-value=67 Score=28.55 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=31.3
Q ss_pred eeeEEEccccc-c---CcccHHHHHHHHHHcCCceeEecCc-cCcCCCcc
Q 043461 19 KYDVFLSFRGE-D---TRNNFTDHLHAALIRNGFIAFKDDE-TLERGNEI 63 (196)
Q Consensus 19 ~yDVFISy~~~-D---~~~~fv~~L~~~L~~~Gi~vf~d~~-~l~~G~~i 63 (196)
.++|+|---++ | .....+..|...|++.||+|-+|++ +-.+|..+
T Consensus 287 P~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g~k~ 336 (477)
T 1hc7_A 287 PIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKF 336 (477)
T ss_dssp SCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHH
T ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHHHHH
Confidence 47887764333 2 2346788999999999999999985 43444443
No 49
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=20.93 E-value=55 Score=23.27 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=15.6
Q ss_pred cCHHHHHHHHHHHHHhhccc
Q 043461 143 ENQEKVLKWRAAFTRVASLA 162 (196)
Q Consensus 143 ~~~~~v~~W~~AL~~v~~~~ 162 (196)
.+.+..++|-+||..++.++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 35788999999999998753
No 50
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.28 E-value=67 Score=21.78 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.7
Q ss_pred cCHHHHHHHHHHHHHhhcc
Q 043461 143 ENQEKVLKWRAAFTRVASL 161 (196)
Q Consensus 143 ~~~~~v~~W~~AL~~v~~~ 161 (196)
.+++..+.|..||..++.+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3568899999999998765
No 51
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=20.20 E-value=90 Score=28.68 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=37.2
Q ss_pred eeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhh-hcceEEEEee
Q 043461 19 KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIE-ESNVSIVILS 82 (196)
Q Consensus 19 ~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~-~S~i~IvV~S 82 (196)
.++|+|---+++.....+..|.+.|++.|++|-+|.++ ..+...+.+|-. +.. .++|+.
T Consensus 545 p~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~----~~~g~k~~~a~~~g~p-~~iivG 604 (645)
T 1nyr_A 545 PKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRN----EKMGYKIREAQMQKIP-YQIVVG 604 (645)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSS----CCHHHHHHHHHHHTCS-EEEEEC
T ss_pred CceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHhcCCC-EEEEEc
Confidence 36787654331333568899999999999999999753 344444555433 344 444444
Done!