BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043463
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
Length = 477
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 6 IHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVL 65
+ +L + +FVF L + G S IRI N++ +L C S+DD G ++
Sbjct: 1 MKNLSIFMFVFSLCMF--GHVSRA------RIRIANELKFKKNLWMRCYSKDDVLGPHII 52
Query: 66 HYNTYWEFQFRPNFWGTTRYYC 87
++ F NFWGTTR+ C
Sbjct: 53 PIGGHFLDYFGTNFWGTTRFMC 74
>sp|Q7MNF3|RLMN_VIBVY Dual-specificity RNA methyltransferase RlmN OS=Vibrio vulnificus
(strain YJ016) GN=rlmN PE=3 SV=1
Length = 374
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 38 RITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKW 97
++T KID V L + +D +++ N W+ Q +F + R Y + N K
Sbjct: 210 QMTGKID--VALAISLHAPNDKLRSEIMPINDRWDIQ---DFLASVRRYIASSNANRGKV 264
Query: 98 ---FDIYDHNRDARECRHCVWTIQPDGPCMLN 126
+ + DH D E H + + D PC +N
Sbjct: 265 TVEYVLLDHVNDGTEHAHELAQLMKDTPCKIN 296
>sp|Q8DEZ6|RLMN_VIBVU Dual-specificity RNA methyltransferase RlmN OS=Vibrio vulnificus
(strain CMCP6) GN=rlmN PE=3 SV=2
Length = 374
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 38 RITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKW 97
++T KID V L + +D +++ N W+ Q +F + R Y + N K
Sbjct: 210 QMTGKID--VALAISLHAPNDKLRSEIMPINDRWDIQ---DFLASVRRYIASSNANRGKV 264
Query: 98 ---FDIYDHNRDARECRHCVWTIQPDGPCMLN 126
+ + DH D E H + + D PC +N
Sbjct: 265 TVEYVLLDHVNDGTEHAHELAQLMKDTPCKIN 296
>sp|Q9C9G2|AEE22_ARATH Probable acyl-activating enzyme 22 OS=Arabidopsis thaliana GN=AEE22
PE=3 SV=1
Length = 535
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 22/109 (20%)
Query: 23 IGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTY---------WEF 73
+GE + L E++ RI N+ DP + L + + D G + H Y WE
Sbjct: 168 MGEPTSPLVENM--FRIQNEQDP-ISLNYTSGTTADPKGVVISHRGAYLTSLGVIIGWEM 224
Query: 74 QFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDGP 122
P Y W +W D+Y N AR CV+ +P P
Sbjct: 225 STCP-------VYLWIFAYVSLQWMDVYMGNSSARG-HQCVY--EPRNP 263
>sp|D3ZHV2|MACF1_RAT Microtubule-actin cross-linking factor 1 OS=Rattus norvegicus
GN=Macf1 PE=1 SV=1
Length = 5430
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 20 AYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFEC-KSRDDDFGKKVLHYNTYWE 72
A I E+++GL E++ IRI G DL F C ++ + K + N WE
Sbjct: 4089 AETIKEETDGLHEELEFIRIL-----GADLIFACGETEKPEVKKSIDEMNNAWE 4137
>sp|Q9QXZ0|MACF1_MOUSE Microtubule-actin cross-linking factor 1 OS=Mus musculus GN=Macf1
PE=1 SV=2
Length = 7354
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 20 AYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFEC-KSRDDDFGKKVLHYNTYWE 72
A I E+++GL E++ IRI G DL F C ++ + K + N WE
Sbjct: 6003 AETIKEETDGLHEELEFIRIL-----GADLIFACGETEKPEVKKSIDEMNNAWE 6051
>sp|O65420|VAL3_ARATH B3 domain-containing transcription factor VAL3 OS=Arabidopsis
thaliana GN=VAL3 PE=4 SV=3
Length = 713
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 38 RITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRY 85
R+ N ++ G D FE KSR+ + H T ++Q P FW Y
Sbjct: 266 RLHNDLNGGADSPFESKSRN-----VMAHLETPGKYQVVPRFWPKVSY 308
>sp|Q9UPN3|MACF1_HUMAN Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo
sapiens GN=MACF1 PE=1 SV=4
Length = 7388
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 20 AYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFEC-KSRDDDFGKKVLHYNTYWE 72
A I E+++GL E++ IRI G DL F C ++ + K + N WE
Sbjct: 6047 AETIKEETDGLHEELEFIRIL-----GADLIFACGETEKPEVRKSIDEMNNAWE 6095
>sp|A1YEV9|ZSC21_GORGO Zinc finger and SCAN domain-containing protein 21 OS=Gorilla
gorilla gorilla GN=ZSCAN21 PE=3 SV=1
Length = 473
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 24 GEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKK 63
G ++EGLKED+ + I NK P L +C + +++ G K
Sbjct: 214 GSEAEGLKEDIISVIIANK--PEASLERQCVNLENEKGTK 251
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.145 0.522
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,974,246
Number of Sequences: 539616
Number of extensions: 2590243
Number of successful extensions: 5336
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5335
Number of HSP's gapped (non-prelim): 11
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)