Query 043463
Match_columns 149
No_of_seqs 104 out of 346
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05938 Self-incomp_S1: Plant 100.0 4.2E-37 9E-42 219.1 14.0 105 35-139 1-110 (110)
2 TIGR02376 Cu_nitrite_red nitri 90.1 1 2.2E-05 37.4 6.4 57 33-89 67-126 (311)
3 PRK02710 plastocyanin; Provisi 88.9 5.2 0.00011 28.4 8.5 31 64-96 83-113 (119)
4 PF07732 Cu-oxidase_3: Multico 85.5 2.2 4.8E-05 30.3 4.9 58 33-90 34-100 (117)
5 PRK04561 tatA twin arginine tr 79.9 1.8 3.8E-05 29.0 2.4 23 1-23 1-24 (75)
6 PRK00442 tatA twin arginine tr 78.8 1.9 4.1E-05 30.0 2.3 23 1-23 1-24 (92)
7 PRK00720 tatA twin arginine tr 77.5 2.3 4.9E-05 28.7 2.4 22 1-22 1-23 (78)
8 PRK02958 tatA twin arginine tr 77.1 2.4 5.2E-05 28.2 2.4 22 1-22 1-23 (73)
9 PF13473 Cupredoxin_1: Cupredo 73.6 7.7 0.00017 26.5 4.4 32 60-91 64-96 (104)
10 PRK01833 tatA twin arginine tr 72.0 3.9 8.4E-05 27.3 2.4 23 1-23 1-24 (74)
11 PRK03554 tatA twin arginine tr 70.2 4.4 9.5E-05 27.9 2.4 22 1-22 1-23 (89)
12 PRK03625 tatE twin arginine tr 70.0 4.2 9.1E-05 26.6 2.2 23 1-23 1-24 (67)
13 PLN02604 oxidoreductase 69.6 13 0.00028 33.4 6.0 70 33-102 63-144 (566)
14 PRK04598 tatA twin arginine tr 69.5 4.7 0.0001 27.3 2.4 17 6-22 7-23 (81)
15 PRK01614 tatE twin arginine tr 69.3 4.7 0.0001 27.5 2.4 23 1-23 1-24 (85)
16 COG1826 TatA Sec-independent p 67.4 4.8 0.0001 27.7 2.2 18 3-21 5-22 (94)
17 PF07172 GRP: Glycine rich pro 66.0 6.1 0.00013 27.4 2.5 22 1-24 1-22 (95)
18 TIGR03388 ascorbase L-ascorbat 66.0 18 0.00039 32.3 6.1 71 33-103 40-122 (541)
19 TIGR03096 nitroso_cyanin nitro 65.9 26 0.00056 25.9 5.9 28 64-91 95-122 (135)
20 PRK10883 FtsI repressor; Provi 59.6 29 0.00063 30.5 6.1 46 33-78 85-133 (471)
21 TIGR01480 copper_res_A copper- 59.4 24 0.00052 32.1 5.7 56 34-89 85-146 (587)
22 PLN02191 L-ascorbate oxidase 58.2 24 0.00053 31.9 5.5 59 33-91 62-129 (574)
23 PLN02168 copper ion binding / 58.0 27 0.00059 31.4 5.8 72 33-104 65-147 (545)
24 PRK01470 tatA twin arginine tr 56.9 11 0.00024 23.3 2.2 18 3-21 4-21 (51)
25 PRK10965 multicopper oxidase; 55.6 33 0.0007 30.7 5.8 47 33-79 85-134 (523)
26 TIGR02656 cyanin_plasto plasto 54.7 64 0.0014 21.8 6.1 24 64-89 63-86 (99)
27 PRK00191 tatA twin arginine tr 54.3 13 0.00028 25.4 2.4 19 2-21 3-21 (84)
28 PLN02835 oxidoreductase 53.8 36 0.00078 30.6 5.8 70 33-102 68-148 (539)
29 PRK14859 tatA twin arginine tr 51.2 16 0.00034 23.6 2.3 16 6-21 7-22 (63)
30 TIGR03389 laccase laccase, pla 50.3 40 0.00086 30.1 5.5 70 33-102 42-122 (539)
31 PF06369 Anemone_cytotox: Sea 50.1 43 0.00094 25.8 4.9 46 33-78 29-76 (176)
32 PLN00044 multi-copper oxidase- 49.5 53 0.0011 30.0 6.2 70 34-103 69-149 (596)
33 PLN02792 oxidoreductase 48.7 42 0.00091 30.2 5.4 68 33-102 55-135 (536)
34 PF13157 DUF3992: Protein of u 48.4 77 0.0017 21.9 5.6 43 35-77 28-70 (92)
35 TIGR03390 ascorbOXfungal L-asc 44.3 54 0.0012 29.4 5.4 58 33-90 47-115 (538)
36 PLN02354 copper ion binding / 44.0 51 0.0011 29.7 5.2 69 33-103 66-147 (552)
37 PLN02991 oxidoreductase 43.8 56 0.0012 29.5 5.4 71 33-103 67-148 (543)
38 PRK00575 tatA twin arginine tr 40.5 25 0.00054 24.4 2.1 16 6-21 7-22 (92)
39 PRK14860 tatA twin arginine tr 40.1 25 0.00055 22.7 2.0 15 7-21 8-22 (64)
40 TIGR02657 amicyanin amicyanin. 39.7 75 0.0016 20.7 4.4 53 34-90 18-73 (83)
41 cd05751 Ig1_LILRB1_like First 39.3 90 0.0019 20.4 4.8 15 44-58 14-28 (91)
42 PF02416 MttA_Hcf106: mttA/Hcf 38.6 27 0.00058 21.5 1.9 18 3-21 2-19 (53)
43 PRK14858 tatA twin arginine tr 35.5 31 0.00067 24.6 2.0 17 3-20 5-21 (108)
44 TIGR01480 copper_res_A copper- 34.4 90 0.0019 28.5 5.3 59 32-90 506-573 (587)
45 TIGR01411 tatAE twin arginine- 33.4 39 0.00084 20.3 2.0 16 4-20 4-19 (47)
46 TIGR03102 halo_cynanin halocya 33.4 1.8E+02 0.0038 20.7 6.9 59 34-96 49-109 (115)
47 PRK14861 tatA twin arginine tr 30.8 44 0.00095 21.3 2.0 18 3-21 6-23 (61)
48 PF06637 PV-1: PV-1 protein (P 29.6 35 0.00075 29.7 1.7 19 2-20 32-50 (442)
49 PF11523 DUF3223: Protein of u 29.1 39 0.00084 22.3 1.6 12 112-123 56-67 (76)
50 PRK14857 tatA twin arginine tr 28.7 49 0.0011 22.8 2.1 17 3-20 7-23 (90)
51 PRK00708 sec-independent trans 27.5 45 0.00098 26.5 1.9 18 2-20 4-21 (209)
52 PF00127 Copper-bind: Copper b 27.4 74 0.0016 21.4 2.8 25 63-89 62-86 (99)
53 PRK01770 sec-independent trans 27.3 48 0.001 25.5 2.0 18 2-20 4-21 (171)
54 CHL00106 petL cytochrome b6/f 26.3 80 0.0017 17.5 2.3 12 1-13 1-12 (31)
55 PF06084 Cytomega_TRL10: Cytom 23.4 36 0.00077 24.8 0.6 19 2-20 63-81 (150)
56 PRK00404 tatB sec-independent 23.1 67 0.0014 24.0 2.0 17 3-20 5-21 (141)
57 PF07676 PD40: WD40-like Beta 22.8 1.4E+02 0.003 16.0 3.4 23 67-91 8-30 (39)
58 PF11284 DUF3085: Protein of u 20.8 79 0.0017 21.7 1.9 16 114-129 3-18 (90)
59 PRK03100 sec-independent trans 20.6 77 0.0017 23.5 1.9 17 3-20 6-22 (136)
60 KOG1263 Multicopper oxidases [ 20.6 3.1E+02 0.0067 25.0 6.1 68 34-104 68-149 (563)
61 PF15240 Pro-rich: Proline-ric 20.5 71 0.0015 24.8 1.8 18 8-27 2-19 (179)
62 PF04379 DUF525: Protein of un 20.3 2.5E+02 0.0054 19.0 4.3 42 33-74 14-68 (90)
63 PF05115 PetL: Cytochrome B6-F 20.1 91 0.002 17.3 1.7 12 1-13 1-12 (31)
No 1
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=100.00 E-value=4.2e-37 Score=219.13 Aligned_cols=105 Identities=42% Similarity=0.911 Sum_probs=97.2
Q ss_pred eEEEEEeCCCCCcceEEeeeeCCCCCcceEecCCCEEEEEEeeCCCCcceEEEEeEeCCc--eeEEEEEeecCCCCC--C
Q 043463 35 RHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNE--FKWFDIYDHNRDARE--C 110 (149)
Q Consensus 35 ~~V~I~N~L~~~~~L~vhCkS~d~DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f~w~~~--~~~fd~y~~~rd~~~--C 110 (149)
++|+|+|+|+++..|.|||+|+|+|||.|.|+||++|+|+|+++++++|+|+|+|+|.+. .+.|+||++.+|..+ |
T Consensus 1 ~~V~I~N~L~~~~~L~vhC~S~d~Dlg~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~~~~~~~~~f~vy~~~~~~~~c~c 80 (110)
T PF05938_consen 1 NHVVIINNLGPGKILTVHCKSKDDDLGWHVLKPGQSYSFSFRDNFFGTTLFWCHFRWPGGKYHHSFDVYRSSRDSRRCRC 80 (110)
T ss_pred CEEEEEECCCCCCeEEEEeeCCCccCCCEECCCCCEEEEEEecCcCCceeEEEEEEECCccEEEEEEEEeccccccCCCC
Confidence 479999999989999999999999999999999999999999999999999999999554 568999999999765 4
Q ss_pred C-ceEEEEecCccEEeccCCCCcceEEeCC
Q 043463 111 R-HCVWTIQPDGPCMLNKAENNYDICYFWN 139 (149)
Q Consensus 111 ~-~c~W~~r~DGiy~~~~~~~~~~~~y~W~ 139 (149)
+ .|.|+||+||||+.+++..+++++|+|+
T Consensus 81 ~~~c~W~ir~dGiy~~~~~~~~~~~~y~W~ 110 (110)
T PF05938_consen 81 GQTCNWSIREDGIYFSNNKNKPWKKCYPWN 110 (110)
T ss_pred CcEEEEEEECCEeEEEcCCCccCcEEeCCC
Confidence 6 6999999999999999878889999997
No 2
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=90.11 E-value=1 Score=37.42 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=41.9
Q ss_pred cceEEEEEeCCCC--CcceEEeeeeCCCC-CcceEecCCCEEEEEEeeCCCCcceEEEEe
Q 043463 33 DVRHIRITNKIDP--GVDLTFECKSRDDD-FGKKVLHYNTYWEFQFRPNFWGTTRYYCWF 89 (149)
Q Consensus 33 ~~~~V~I~N~L~~--~~~L~vhCkS~d~D-lG~~~L~~g~~~~f~F~~~~~~~T~f~C~f 89 (149)
..+.|.++|++.. ...+.+|-....++ -+...++||+++.+.|..+-.|+-.|.|+.
T Consensus 67 d~v~v~v~N~~~~~~~h~~h~H~~~~~dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~ 126 (311)
T TIGR02376 67 DYVELTLINPPTNTMPHNVDFHAATGALGGAALTQVNPGETATLRFKATRPGAFVYHCAP 126 (311)
T ss_pred CEEEEEEEeCCCCCCceeeeecCCCccCCCCcceeECCCCeEEEEEEcCCCEEEEEEcCC
Confidence 5678899999852 24577776543333 344559999999999998777888888994
No 3
>PRK02710 plastocyanin; Provisional
Probab=88.91 E-value=5.2 Score=28.40 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=23.8
Q ss_pred EecCCCEEEEEEeeCCCCcceEEEEeEeCCcee
Q 043463 64 VLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFK 96 (149)
Q Consensus 64 ~L~~g~~~~f~F~~~~~~~T~f~C~f~w~~~~~ 96 (149)
.+.||+++++.|.+ .|+-.|+|......+++
T Consensus 83 ~~~pg~t~~~tF~~--~G~y~y~C~~H~~~gM~ 113 (119)
T PRK02710 83 AFAPGESWEETFSE--AGTYTYYCEPHRGAGMV 113 (119)
T ss_pred ccCCCCEEEEEecC--CEEEEEEcCCCccCCcE
Confidence 47899999999998 58889999954433433
No 4
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=85.46 E-value=2.2 Score=30.35 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=40.8
Q ss_pred cceEEEEEeCCCCCcceEEeeeeCCC--------CCcceEecCCCEEEEEEeeCC-CCcceEEEEeE
Q 043463 33 DVRHIRITNKIDPGVDLTFECKSRDD--------DFGKKVLHYNTYWEFQFRPNF-WGTTRYYCWFA 90 (149)
Q Consensus 33 ~~~~V~I~N~L~~~~~L~vhCkS~d~--------DlG~~~L~~g~~~~f~F~~~~-~~~T~f~C~f~ 90 (149)
..+.|.++|+|.....|..|=-.... +.....+.||+++.++|..+- .|+=-|.|+..
T Consensus 34 d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~ 100 (117)
T PF07732_consen 34 DTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVH 100 (117)
T ss_dssp EEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECST
T ss_pred CeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCC
Confidence 57789999999766678887544221 222345899999999999886 56545556653
No 5
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=79.92 E-value=1.8 Score=28.98 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=18.1
Q ss_pred CCchh-HHHHHHHHHHHHHHhhhh
Q 043463 1 MGSFT-IHDLLVILFVFPLFAYVI 23 (149)
Q Consensus 1 m~~~~-~~f~~~~~v~~~~f~~~~ 23 (149)
|.++. .+++++++|++++||...
T Consensus 1 Mgg~s~~ellIIlvIvlLlFG~~K 24 (75)
T PRK04561 1 MGSFSIWHWLVVLVIVLLVFGTKR 24 (75)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCcc
Confidence 66555 689999999999999533
No 6
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=78.83 E-value=1.9 Score=29.95 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.0
Q ss_pred CCchh-HHHHHHHHHHHHHHhhhh
Q 043463 1 MGSFT-IHDLLVILFVFPLFAYVI 23 (149)
Q Consensus 1 m~~~~-~~f~~~~~v~~~~f~~~~ 23 (149)
|..+. .+++++++|++++||..-
T Consensus 1 Mg~~g~~elliIlvIvlllFG~~K 24 (92)
T PRK00442 1 MGIFDWKHWIVILVVVVLVFGTKK 24 (92)
T ss_pred CCCccHHHHHHHHHHHHHHhCcch
Confidence 65554 599999999999999543
No 7
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=77.53 E-value=2.3 Score=28.66 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=17.3
Q ss_pred CCchh-HHHHHHHHHHHHHHhhh
Q 043463 1 MGSFT-IHDLLVILFVFPLFAYV 22 (149)
Q Consensus 1 m~~~~-~~f~~~~~v~~~~f~~~ 22 (149)
|.++. .+++++++|++++|+..
T Consensus 1 Mgg~g~~ellIIlvIvlllFG~k 23 (78)
T PRK00720 1 MGSFSIWHWLIVLAVVLLLFGRG 23 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHhCcc
Confidence 65444 58999999999999843
No 8
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=77.06 E-value=2.4 Score=28.18 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=17.2
Q ss_pred CCchh-HHHHHHHHHHHHHHhhh
Q 043463 1 MGSFT-IHDLLVILFVFPLFAYV 22 (149)
Q Consensus 1 m~~~~-~~f~~~~~v~~~~f~~~ 22 (149)
|+++. .+++++++|++++||..
T Consensus 1 mg~~g~~elliIl~IvlllFG~k 23 (73)
T PRK02958 1 MGSFSIWHWLIVLVIVVLVFGTK 23 (73)
T ss_pred CCCccHHHHHHHHHHHHHHhCcc
Confidence 55444 58999999999999843
No 9
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=73.61 E-value=7.7 Score=26.51 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=21.0
Q ss_pred Ccc-eEecCCCEEEEEEeeCCCCcceEEEEeEe
Q 043463 60 FGK-KVLHYNTYWEFQFRPNFWGTTRYYCWFAW 91 (149)
Q Consensus 60 lG~-~~L~~g~~~~f~F~~~~~~~T~f~C~f~w 91 (149)
++. ..|.||++..+.|.+.-.|+=.|+|.+.-
T Consensus 64 ~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~ 96 (104)
T PF13473_consen 64 LGISKVLPPGETATVTFTPLKPGEYEFYCTMHP 96 (104)
T ss_dssp GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-
T ss_pred CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCC
Confidence 454 56999999999998877788899999643
No 10
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=72.04 E-value=3.9 Score=27.26 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=17.3
Q ss_pred CCchh-HHHHHHHHHHHHHHhhhh
Q 043463 1 MGSFT-IHDLLVILFVFPLFAYVI 23 (149)
Q Consensus 1 m~~~~-~~f~~~~~v~~~~f~~~~ 23 (149)
|..+. .+++++++|++++||...
T Consensus 1 m~g~g~~elliIl~i~lllFG~kK 24 (74)
T PRK01833 1 MGGISIWQLLIIVAIIVLLFGTKK 24 (74)
T ss_pred CCCccHHHHHHHHHHHHHHhCcch
Confidence 54444 589999999999999433
No 11
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=70.24 E-value=4.4 Score=27.95 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=16.5
Q ss_pred CCchh-HHHHHHHHHHHHHHhhh
Q 043463 1 MGSFT-IHDLLVILFVFPLFAYV 22 (149)
Q Consensus 1 m~~~~-~~f~~~~~v~~~~f~~~ 22 (149)
|..+. .+++++++|++++||..
T Consensus 1 M~glG~~eLlIIlvIvLLlFG~k 23 (89)
T PRK03554 1 MGGISIWQLLIIAVIVVLLFGTK 23 (89)
T ss_pred CCCccHHHHHHHHHHHHHHhCcc
Confidence 54333 58999999999999843
No 12
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=69.96 E-value=4.2 Score=26.57 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=17.1
Q ss_pred CCchh-HHHHHHHHHHHHHHhhhh
Q 043463 1 MGSFT-IHDLLVILFVFPLFAYVI 23 (149)
Q Consensus 1 m~~~~-~~f~~~~~v~~~~f~~~~ 23 (149)
|..+. .+++++++|++++||...
T Consensus 1 M~~ig~~elliIlvI~lllFGpkK 24 (67)
T PRK03625 1 MGEISITKLLVVAALVVLLFGTKK 24 (67)
T ss_pred CCCCcHHHHHHHHHHHHHHcCccH
Confidence 54333 499999999999998433
No 13
>PLN02604 oxidoreductase
Probab=69.63 E-value=13 Score=33.44 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=44.1
Q ss_pred cceEEEEEeCCC-CCcceEEeeeeC------CCC--CcceEecCCCEEEEEEeeCCCCcceEEEEeEeC--Ccee-EEEE
Q 043463 33 DVRHIRITNKID-PGVDLTFECKSR------DDD--FGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWR--NEFK-WFDI 100 (149)
Q Consensus 33 ~~~~V~I~N~L~-~~~~L~vhCkS~------d~D--lG~~~L~~g~~~~f~F~~~~~~~T~f~C~f~w~--~~~~-~fd~ 100 (149)
..+.|+++|+|. ....+..|=-.. |.- +....++||++|.++|..+-.|+--|.|+.... .+.. -+.|
T Consensus 63 d~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV 142 (566)
T PLN02604 63 DTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRV 142 (566)
T ss_pred CEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCCCeEEEEE
Confidence 355688999984 334566665321 111 122358999999999998777888888988442 2223 4555
Q ss_pred Ee
Q 043463 101 YD 102 (149)
Q Consensus 101 y~ 102 (149)
..
T Consensus 143 ~~ 144 (566)
T PLN02604 143 SL 144 (566)
T ss_pred Ee
Confidence 53
No 14
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=69.53 E-value=4.7 Score=27.34 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q 043463 6 IHDLLVILFVFPLFAYV 22 (149)
Q Consensus 6 ~~f~~~~~v~~~~f~~~ 22 (149)
.+++++++|++++||..
T Consensus 7 ~elliIlvivlllFG~k 23 (81)
T PRK04598 7 WQLLIIAVIVVLLFGTK 23 (81)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 48999999999999843
No 15
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=69.29 E-value=4.7 Score=27.52 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=17.1
Q ss_pred CCchh-HHHHHHHHHHHHHHhhhh
Q 043463 1 MGSFT-IHDLLVILFVFPLFAYVI 23 (149)
Q Consensus 1 m~~~~-~~f~~~~~v~~~~f~~~~ 23 (149)
|..+. .+++++++|++++|+...
T Consensus 1 M~GlG~~ELLIIlvIvLLLFG~kK 24 (85)
T PRK01614 1 MEGLSITKLLVVGILIVLLFGTSK 24 (85)
T ss_pred CCCccHHHHHHHHHHHHHHhCcch
Confidence 54333 589999999999999543
No 16
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=67.44 E-value=4.8 Score=27.69 Aligned_cols=18 Identities=11% Similarity=0.418 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHHHHHHhh
Q 043463 3 SFTIHDLLVILFVFPLFAY 21 (149)
Q Consensus 3 ~~~~~f~~~~~v~~~~f~~ 21 (149)
+++ +++++++|++++||.
T Consensus 5 g~~-elliIlvV~lllfGp 22 (94)
T COG1826 5 GWS-ELLIILVVALLVFGP 22 (94)
T ss_pred CHH-HHHHHHHHHHHhcCc
Confidence 556 999999999999984
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=66.03 E-value=6.1 Score=27.43 Aligned_cols=22 Identities=27% Similarity=0.171 Sum_probs=10.8
Q ss_pred CCchhHHHHHHHHHHHHHHhhhhc
Q 043463 1 MGSFTIHDLLVILFVFPLFAYVIG 24 (149)
Q Consensus 1 m~~~~~~f~~~~~v~~~~f~~~~~ 24 (149)
|+| ..||+|.+++.+++++.+.
T Consensus 1 MaS--K~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MAS--KAFLLLGLLLAALLLISSE 22 (95)
T ss_pred Cch--hHHHHHHHHHHHHHHHHhh
Confidence 773 3466655554444443333
No 18
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=66.00 E-value=18 Score=32.32 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=44.8
Q ss_pred cceEEEEEeCCCC-CcceEEeeeeC------CCCCc--ceEecCCCEEEEEEeeCCCCcceEEEEeEeC--Ccee-EEEE
Q 043463 33 DVRHIRITNKIDP-GVDLTFECKSR------DDDFG--KKVLHYNTYWEFQFRPNFWGTTRYYCWFAWR--NEFK-WFDI 100 (149)
Q Consensus 33 ~~~~V~I~N~L~~-~~~L~vhCkS~------d~DlG--~~~L~~g~~~~f~F~~~~~~~T~f~C~f~w~--~~~~-~fd~ 100 (149)
..+.|.++|+|.+ ...+..|=-.. |..-| ...++||++|.+.|..+--|+--|.|+.... .+.. -+.|
T Consensus 40 d~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV 119 (541)
T TIGR03388 40 DTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIV 119 (541)
T ss_pred CEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhccceEEEEE
Confidence 5678999999963 33444443321 11122 2358999999999998777888888996432 2222 4666
Q ss_pred Eee
Q 043463 101 YDH 103 (149)
Q Consensus 101 y~~ 103 (149)
...
T Consensus 120 ~~~ 122 (541)
T TIGR03388 120 DVP 122 (541)
T ss_pred ecC
Confidence 544
No 19
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=65.90 E-value=26 Score=25.92 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.0
Q ss_pred EecCCCEEEEEEeeCCCCcceEEEEeEe
Q 043463 64 VLHYNTYWEFQFRPNFWGTTRYYCWFAW 91 (149)
Q Consensus 64 ~L~~g~~~~f~F~~~~~~~T~f~C~f~w 91 (149)
.|+||+...++|..+-.|+=.|+|.+--
T Consensus 95 ~I~pGet~TitF~adKpG~Y~y~C~~HP 122 (135)
T TIGR03096 95 VIKAGETKTISFKADKAGAFTIWCQLHP 122 (135)
T ss_pred EECCCCeEEEEEECCCCEEEEEeCCCCC
Confidence 4899999999999888888899998853
No 20
>PRK10883 FtsI repressor; Provisional
Probab=59.58 E-value=29 Score=30.52 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=29.6
Q ss_pred cceEEEEEeCCCCCcceEEeeee--CC-CCCcceEecCCCEEEEEEeeC
Q 043463 33 DVRHIRITNKIDPGVDLTFECKS--RD-DDFGKKVLHYNTYWEFQFRPN 78 (149)
Q Consensus 33 ~~~~V~I~N~L~~~~~L~vhCkS--~d-~DlG~~~L~~g~~~~f~F~~~ 78 (149)
..+.|.++|+|+....|..|=-- .. +|--...+.||++|.+.|..+
T Consensus 85 d~v~v~v~N~L~~~ttiHwHGl~~~~~~~~g~~~~I~PG~~~~y~f~~~ 133 (471)
T PRK10883 85 DDVKLIYSNRLTEPVSMTVSGLQVPGPLMGGPARMMSPNADWAPVLPIR 133 (471)
T ss_pred CEEEEEEEeCCCCCCceeECCccCCCCCCCCccccCCCCCeEEEEEecC
Confidence 56789999999754444444221 21 332234589999999999754
No 21
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=59.44 E-value=24 Score=32.09 Aligned_cols=56 Identities=14% Similarity=0.174 Sum_probs=35.8
Q ss_pred ceEEEEEeCCCCCcceEEeeeeC--C-C---CCcceEecCCCEEEEEEeeCCCCcceEEEEe
Q 043463 34 VRHIRITNKIDPGVDLTFECKSR--D-D---DFGKKVLHYNTYWEFQFRPNFWGTTRYYCWF 89 (149)
Q Consensus 34 ~~~V~I~N~L~~~~~L~vhCkS~--d-~---DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f 89 (149)
.+.|.++|+|.....|..|=-.. . | ++....++||++|.++|...--|+--|.|+.
T Consensus 85 ~v~v~v~N~l~~~tsiHwHGl~~~~~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~ 146 (587)
T TIGR01480 85 TVRLRVTNTLPEDTSIHWHGILLPFQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHS 146 (587)
T ss_pred EEEEEEEcCCCCCceEEcCCCcCCccccCCCcccccccCCCCeEEEEEECCCCeeEEEecCc
Confidence 45688999997654555553321 1 1 2223468999999999997655544555765
No 22
>PLN02191 L-ascorbate oxidase
Probab=58.23 E-value=24 Score=31.86 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=38.0
Q ss_pred cceEEEEEeCCCC-CcceEEeeeeC------CCC--CcceEecCCCEEEEEEeeCCCCcceEEEEeEe
Q 043463 33 DVRHIRITNKIDP-GVDLTFECKSR------DDD--FGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAW 91 (149)
Q Consensus 33 ~~~~V~I~N~L~~-~~~L~vhCkS~------d~D--lG~~~L~~g~~~~f~F~~~~~~~T~f~C~f~w 91 (149)
....|.|+|+|.. ...|..|=-.. |.- +...-++||++|.+.|..+-.|+--|.|+...
T Consensus 62 d~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~ 129 (574)
T PLN02191 62 DTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGM 129 (574)
T ss_pred CEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHH
Confidence 4567889999963 33343333221 111 12244899999999999876787777788743
No 23
>PLN02168 copper ion binding / pectinesterase
Probab=58.04 E-value=27 Score=31.44 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=42.3
Q ss_pred cceEEEEEeCCCCCcceEEeeeeC-----CCC-Ccc-eEecCCCEEEEEEeeC-CCCcceEEEEeEeC--Cc-eeEEEEE
Q 043463 33 DVRHIRITNKIDPGVDLTFECKSR-----DDD-FGK-KVLHYNTYWEFQFRPN-FWGTTRYYCWFAWR--NE-FKWFDIY 101 (149)
Q Consensus 33 ~~~~V~I~N~L~~~~~L~vhCkS~-----d~D-lG~-~~L~~g~~~~f~F~~~-~~~~T~f~C~f~w~--~~-~~~fd~y 101 (149)
....|.++|+|..+..|.-|=--. .|. -|. .-++||++|.++|... --||--|.+++... .+ .--+.|.
T Consensus 65 D~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~ 144 (545)
T PLN02168 65 DVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIY 144 (545)
T ss_pred CEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEc
Confidence 355688999998655555553321 122 232 2389999999999963 45655555666432 12 2246665
Q ss_pred eec
Q 043463 102 DHN 104 (149)
Q Consensus 102 ~~~ 104 (149)
...
T Consensus 145 ~~~ 147 (545)
T PLN02168 145 NPE 147 (545)
T ss_pred CCc
Confidence 543
No 24
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=56.88 E-value=11 Score=23.26 Aligned_cols=18 Identities=50% Similarity=0.894 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHhh
Q 043463 3 SFTIHDLLVILFVFPLFAY 21 (149)
Q Consensus 3 ~~~~~f~~~~~v~~~~f~~ 21 (149)
++. ++++++++++++|+.
T Consensus 4 g~~-elliI~vi~llvFGp 21 (51)
T PRK01470 4 SFS-HLLIVLLIIFVLFGA 21 (51)
T ss_pred CHH-HHHHHHHHHHHhcCc
Confidence 555 888999999999984
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=55.63 E-value=33 Score=30.73 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=30.6
Q ss_pred cceEEEEEeCCCCCcceEEeeee--CCCCCc-ceEecCCCEEEEEEeeCC
Q 043463 33 DVRHIRITNKIDPGVDLTFECKS--RDDDFG-KKVLHYNTYWEFQFRPNF 79 (149)
Q Consensus 33 ~~~~V~I~N~L~~~~~L~vhCkS--~d~DlG-~~~L~~g~~~~f~F~~~~ 79 (149)
..+.|+++|+|.....|..|=-. ...|=+ ...+.||++|.+.|..+-
T Consensus 85 d~v~v~~~N~L~~~ttiHwHGl~~~~~~DG~pq~~I~PG~s~~Y~f~~~q 134 (523)
T PRK10965 85 KAVTVDITNQLPEETTLHWHGLEVPGEVDGGPQGIIAPGGKRTVTFTVDQ 134 (523)
T ss_pred CEEEEEEEECCCCCccEEcccccCCCccCCCCCCCCCCCCEEEEEeccCC
Confidence 46789999999755444444322 122212 345899999999998763
No 26
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=54.68 E-value=64 Score=21.79 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.6
Q ss_pred EecCCCEEEEEEeeCCCCcceEEEEe
Q 043463 64 VLHYNTYWEFQFRPNFWGTTRYYCWF 89 (149)
Q Consensus 64 ~L~~g~~~~f~F~~~~~~~T~f~C~f 89 (149)
.+.||+++++.|.. .|+-.|+|..
T Consensus 63 ~~~pG~t~~~tF~~--~G~y~y~C~~ 86 (99)
T TIGR02656 63 LNSPGESYEVTFST--PGTYTFYCEP 86 (99)
T ss_pred ccCCCCEEEEEeCC--CEEEEEEcCC
Confidence 47899999999997 5788999983
No 27
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=54.26 E-value=13 Score=25.39 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=15.4
Q ss_pred CchhHHHHHHHHHHHHHHhh
Q 043463 2 GSFTIHDLLVILFVFPLFAY 21 (149)
Q Consensus 2 ~~~~~~f~~~~~v~~~~f~~ 21 (149)
.++. +++++++|++++||.
T Consensus 3 ig~~-ElliI~vI~lllFGp 21 (84)
T PRK00191 3 LGPW-EIGIIVLLIIVLFGA 21 (84)
T ss_pred CcHH-HHHHHHHHHHHHhcc
Confidence 3455 888999999999984
No 28
>PLN02835 oxidoreductase
Probab=53.84 E-value=36 Score=30.56 Aligned_cols=70 Identities=20% Similarity=0.314 Sum_probs=39.2
Q ss_pred cceEEEEEeCCCCCcceEEeeee----C-CCC-Ccc-eEecCCCEEEEEEee-CCCCcceEEEEeEeC--Ccee-EEEEE
Q 043463 33 DVRHIRITNKIDPGVDLTFECKS----R-DDD-FGK-KVLHYNTYWEFQFRP-NFWGTTRYYCWFAWR--NEFK-WFDIY 101 (149)
Q Consensus 33 ~~~~V~I~N~L~~~~~L~vhCkS----~-d~D-lG~-~~L~~g~~~~f~F~~-~~~~~T~f~C~f~w~--~~~~-~fd~y 101 (149)
..+.|.++|+|.....|.-|=-. . .|- .|. .-++||++|.++|.. +-.||--|.++..+. .+.. -+.|.
T Consensus 68 D~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~ 147 (539)
T PLN02835 68 DNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVY 147 (539)
T ss_pred CEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEe
Confidence 35568899999755444444321 1 122 232 238999999999985 345544455665432 2222 45565
Q ss_pred e
Q 043463 102 D 102 (149)
Q Consensus 102 ~ 102 (149)
.
T Consensus 148 ~ 148 (539)
T PLN02835 148 E 148 (539)
T ss_pred C
Confidence 4
No 29
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=51.20 E-value=16 Score=23.57 Aligned_cols=16 Identities=13% Similarity=0.355 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 043463 6 IHDLLVILFVFPLFAY 21 (149)
Q Consensus 6 ~~f~~~~~v~~~~f~~ 21 (149)
..++++++|++++||.
T Consensus 7 ~ElliIlvv~LlvfGp 22 (63)
T PRK14859 7 PELIVILVIVLIVFGA 22 (63)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 3889999999999984
No 30
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=50.28 E-value=40 Score=30.11 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=43.0
Q ss_pred cceEEEEEeCCCCCcceEEeeee--C---CCC-Ccc--eEecCCCEEEEEEee-CCCCcceEEEEeEeC-Ccee-EEEEE
Q 043463 33 DVRHIRITNKIDPGVDLTFECKS--R---DDD-FGK--KVLHYNTYWEFQFRP-NFWGTTRYYCWFAWR-NEFK-WFDIY 101 (149)
Q Consensus 33 ~~~~V~I~N~L~~~~~L~vhCkS--~---d~D-lG~--~~L~~g~~~~f~F~~-~~~~~T~f~C~f~w~-~~~~-~fd~y 101 (149)
..+.|.++|+|.....|..|=-. . .|. -|. --++||++|.++|.. +--|+--|.|+.... .+.. -+.|.
T Consensus 42 D~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~ 121 (539)
T TIGR03389 42 DTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVIL 121 (539)
T ss_pred CEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEc
Confidence 56789999999865545555432 1 121 121 237899999999996 356766777887532 1222 45555
Q ss_pred e
Q 043463 102 D 102 (149)
Q Consensus 102 ~ 102 (149)
.
T Consensus 122 ~ 122 (539)
T TIGR03389 122 P 122 (539)
T ss_pred C
Confidence 4
No 31
>PF06369 Anemone_cytotox: Sea anemone cytotoxic protein; InterPro: IPR009104 Sea anemones are a rich source of lethal pore-forming peptides and proteins, known collectively as cytolysins or actinoporins. There are several different groups of cytolysins based on their structure and function []. This entry represents the most numerous group, the 20kDa highly basic peptides. These cytolysins form cation-selective pores in sphingomyelin-containing membranes. Examples include equinatoxins (from Actinia equina), sticholysins (from Stichodactyla helianthus), magnificalysins (from Heteractis magnifica), and tenebrosins (from Actinia tenebrosa), which exhibit pore-forming, haemolytic, cytotoxic, and heart stimulatory activities. Cytolysins adopt a stable soluble structure, which undergoes a conformational change when brought in contact with a membrane, leading to an active, membrane-bound form that inserts spontaneously into the membrane. They often oligomerise on the membrane surface, before puncturing the lipid bilayers, causing the cell to lyse. The 20kDa sea anemone cytolysins require a phosphocholine lipid headgroup for binding, however sphingomyelin is required for the toxin to promote membrane permeability []. The crystal structures of equinotoxin II [] and sticholysin II [] both revealed a compact beta-sandwich consisting of ten strands in two sheets flanked on each side by two short alpha-helices, which is a similar topology to osmotin. It is believed that the beta sandwich structure attaches to the membrane, while a three-turn alpha helix lying on the surface of the beta sheet may be involved in membrane pore formation, possibly by the penetration of the membrane by the helix.; GO: 0015267 channel activity, 0006812 cation transport, 0046931 pore complex assembly, 0052331 hemolysis in other organism involved in symbiotic interaction, 0046930 pore complex; PDB: 2KS4_A 1KD6_A 1IAZ_A 1TZQ_A 3LIM_F 1O71_B 2L2B_A 1GWY_B 1O72_A 2L38_A ....
Probab=50.09 E-value=43 Score=25.84 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=34.1
Q ss_pred cceEEEEEeCCCCC-cceEEeeeeCCCCCcc-eEecCCCEEEEEEeeC
Q 043463 33 DVRHIRITNKIDPG-VDLTFECKSRDDDFGK-KVLHYNTYWEFQFRPN 78 (149)
Q Consensus 33 ~~~~V~I~N~L~~~-~~L~vhCkS~d~DlG~-~~L~~g~~~~f~F~~~ 78 (149)
++..|.|.|+-+.. ..+.+.|+|+.-|+.. +.++++..-.+.|+.+
T Consensus 29 RkiaIgi~N~s~~~~ta~~~Yf~SGt~d~~lp~~V~~~kal~~~~~K~ 76 (176)
T PF06369_consen 29 RKIAIGIDNESGHTWTALNVYFRSGTSDVPLPPTVPPQKALLYSFRKS 76 (176)
T ss_dssp SEEEEEEEEESSS-EEEEEEEEEESBSSS-S-SEE-TTEEEEEEEEST
T ss_pred cceEEEEEcCCCCeEeccceEEecccccCCCCCccCCcceEEEEEecC
Confidence 78999999987654 5699999998766654 4577777777888754
No 32
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=49.46 E-value=53 Score=30.02 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=39.3
Q ss_pred ceEEEEEeCCCCCcceEEeeee----C-CCCC-cce-EecCCCEEEEEEeeC-CCCcceEEEEeEeC--Cc-eeEEEEEe
Q 043463 34 VRHIRITNKIDPGVDLTFECKS----R-DDDF-GKK-VLHYNTYWEFQFRPN-FWGTTRYYCWFAWR--NE-FKWFDIYD 102 (149)
Q Consensus 34 ~~~V~I~N~L~~~~~L~vhCkS----~-d~Dl-G~~-~L~~g~~~~f~F~~~-~~~~T~f~C~f~w~--~~-~~~fd~y~ 102 (149)
.+.|+|+|.|..+..+.-|=-. . .|-. |.+ -++||++|.++|... --||--|..++.+. .+ +--+.|+.
T Consensus 69 ~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~ 148 (596)
T PLN00044 69 NLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINN 148 (596)
T ss_pred EEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcC
Confidence 4557888998755444433221 1 1212 222 289999999999873 44544445666543 22 22566765
Q ss_pred e
Q 043463 103 H 103 (149)
Q Consensus 103 ~ 103 (149)
.
T Consensus 149 ~ 149 (596)
T PLN00044 149 R 149 (596)
T ss_pred c
Confidence 3
No 33
>PLN02792 oxidoreductase
Probab=48.69 E-value=42 Score=30.17 Aligned_cols=68 Identities=18% Similarity=0.358 Sum_probs=42.0
Q ss_pred cceEEEEEeCCCCCcceEEeeee----C---CCC-Ccc-eEecCCCEEEEEEee-CCCCcceEEEEeEeCC---ceeEEE
Q 043463 33 DVRHIRITNKIDPGVDLTFECKS----R---DDD-FGK-KVLHYNTYWEFQFRP-NFWGTTRYYCWFAWRN---EFKWFD 99 (149)
Q Consensus 33 ~~~~V~I~N~L~~~~~L~vhCkS----~---d~D-lG~-~~L~~g~~~~f~F~~-~~~~~T~f~C~f~w~~---~~~~fd 99 (149)
..+.|.++|+|..+ ..||-.- + .|- .|. .-++||++|.++|.. +-.||--|.++..+.- ..-.+.
T Consensus 55 D~v~V~v~N~L~~~--ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~li 132 (536)
T PLN02792 55 DNLVINVHNDLDEP--FLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLR 132 (536)
T ss_pred CEEEEEEEeCCCCC--cCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceE
Confidence 56789999999754 4555442 0 122 221 238999999999996 3567666667775542 222465
Q ss_pred EEe
Q 043463 100 IYD 102 (149)
Q Consensus 100 ~y~ 102 (149)
|..
T Consensus 133 I~~ 135 (536)
T PLN02792 133 IYS 135 (536)
T ss_pred EeC
Confidence 554
No 34
>PF13157 DUF3992: Protein of unknown function (DUF3992)
Probab=48.41 E-value=77 Score=21.88 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=33.5
Q ss_pred eEEEEEeCCCCCcceEEeeeeCCCCCcceEecCCCEEEEEEee
Q 043463 35 RHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRP 77 (149)
Q Consensus 35 ~~V~I~N~L~~~~~L~vhCkS~d~DlG~~~L~~g~~~~f~F~~ 77 (149)
-++.|.|+-+++..+.|.=-+......-..+.||++-+|.+++
T Consensus 28 gTi~V~n~~~~~~~itV~i~~~g~~v~tftV~pG~S~S~T~~~ 70 (92)
T PF13157_consen 28 GTIYVYNDTGSGNPITVTILQNGTAVNTFTVQPGNSRSFTVRD 70 (92)
T ss_pred EEEEEEECCCCCCCEEEEEEECCcEEeEEEECCCceEEEEecc
Confidence 3688999988775666655576777777789999999998775
No 35
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=44.32 E-value=54 Score=29.36 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=35.9
Q ss_pred cceEEEEEeCCCC-CcceEEeeee------CCCCCcce--EecCCCEEEEEEeeC--CCCcceEEEEeE
Q 043463 33 DVRHIRITNKIDP-GVDLTFECKS------RDDDFGKK--VLHYNTYWEFQFRPN--FWGTTRYYCWFA 90 (149)
Q Consensus 33 ~~~~V~I~N~L~~-~~~L~vhCkS------~d~DlG~~--~L~~g~~~~f~F~~~--~~~~T~f~C~f~ 90 (149)
..+.|.++|+|.+ +..|..|=-. .|..-|.- -++||++|.+.|..+ -.|+--|.|+..
T Consensus 47 D~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~ 115 (538)
T TIGR03390 47 QTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVG 115 (538)
T ss_pred CEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCc
Confidence 5778999999973 3334444321 12222322 389999999999853 356555667763
No 36
>PLN02354 copper ion binding / oxidoreductase
Probab=43.96 E-value=51 Score=29.71 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=40.8
Q ss_pred cceEEEEEeCCCCCcceEEeeee--------CCCCCcc-eEecCCCEEEEEEee-CCCCcceEEEEeEeC--Ccee-EEE
Q 043463 33 DVRHIRITNKIDPGVDLTFECKS--------RDDDFGK-KVLHYNTYWEFQFRP-NFWGTTRYYCWFAWR--NEFK-WFD 99 (149)
Q Consensus 33 ~~~~V~I~N~L~~~~~L~vhCkS--------~d~DlG~-~~L~~g~~~~f~F~~-~~~~~T~f~C~f~w~--~~~~-~fd 99 (149)
..+.|.|+|+|..+ ..+|-.- .|.--|. --++||++|.++|.. +-.||--|.+++.+. .+.. -+.
T Consensus 66 D~v~V~v~N~l~~~--ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lI 143 (552)
T PLN02354 66 NNIVINVFNNLDEP--FLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLR 143 (552)
T ss_pred CEEEEEEEECCCCC--cccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEE
Confidence 45568899999654 4455442 1111222 228999999999996 345655666666443 2222 466
Q ss_pred EEee
Q 043463 100 IYDH 103 (149)
Q Consensus 100 ~y~~ 103 (149)
|...
T Consensus 144 I~~~ 147 (552)
T PLN02354 144 VNSR 147 (552)
T ss_pred EcCC
Confidence 6543
No 37
>PLN02991 oxidoreductase
Probab=43.76 E-value=56 Score=29.47 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=39.4
Q ss_pred cceEEEEEeCCCCCcceEEeeee----C-CCC-Ccc-eEecCCCEEEEEEee-CCCCcceEEEEeEeC---CceeEEEEE
Q 043463 33 DVRHIRITNKIDPGVDLTFECKS----R-DDD-FGK-KVLHYNTYWEFQFRP-NFWGTTRYYCWFAWR---NEFKWFDIY 101 (149)
Q Consensus 33 ~~~~V~I~N~L~~~~~L~vhCkS----~-d~D-lG~-~~L~~g~~~~f~F~~-~~~~~T~f~C~f~w~---~~~~~fd~y 101 (149)
..+.|.|+|+|..+..|.-|=-. . .|. -|. .-++||++|.++|.. +-.||--|..+..+. +-.-.+.|.
T Consensus 67 D~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~ 146 (543)
T PLN02991 67 DNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRIS 146 (543)
T ss_pred CEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEe
Confidence 35568899999754334333222 1 121 122 248999999999996 345644444555432 122246665
Q ss_pred ee
Q 043463 102 DH 103 (149)
Q Consensus 102 ~~ 103 (149)
..
T Consensus 147 ~~ 148 (543)
T PLN02991 147 SR 148 (543)
T ss_pred CC
Confidence 43
No 38
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=40.50 E-value=25 Score=24.39 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 043463 6 IHDLLVILFVFPLFAY 21 (149)
Q Consensus 6 ~~f~~~~~v~~~~f~~ 21 (149)
..+++++++++++||-
T Consensus 7 ~ElliIlvi~LllFGp 22 (92)
T PRK00575 7 WHWAILAVVVILLFGA 22 (92)
T ss_pred HHHHHHHHHHHHhccc
Confidence 3888989999999984
No 39
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=40.10 E-value=25 Score=22.68 Aligned_cols=15 Identities=7% Similarity=0.361 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhh
Q 043463 7 HDLLVILFVFPLFAY 21 (149)
Q Consensus 7 ~f~~~~~v~~~~f~~ 21 (149)
+++++++|++++|+.
T Consensus 8 ElliI~vIalllfGp 22 (64)
T PRK14860 8 ELIVILVIALVVFGP 22 (64)
T ss_pred HHHHHHHHHHhhcCc
Confidence 889999999999983
No 40
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=39.73 E-value=75 Score=20.71 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=33.1
Q ss_pred ceEEEEEeCCCCCcceEEeeeeC---CCCCcceEecCCCEEEEEEeeCCCCcceEEEEeE
Q 043463 34 VRHIRITNKIDPGVDLTFECKSR---DDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFA 90 (149)
Q Consensus 34 ~~~V~I~N~L~~~~~L~vhCkS~---d~DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f~ 90 (149)
.-+|+..|+=+....+... +. +.+..--.+.+|+.|.+.|.. .|+-.|.|...
T Consensus 18 GdtVt~~N~d~~~Hnv~~~--~g~~~~~~~~~~~~~~g~~~~~tf~~--~G~y~y~C~~H 73 (83)
T TIGR02657 18 GDTVTWINREAMPHNVHFV--AGVLGEAALKGPMMKKEQAYSLTFTE--AGTYDYHCTPH 73 (83)
T ss_pred CCEEEEEECCCCCccEEec--CCCCccccccccccCCCCEEEEECCC--CEEEEEEcCCC
Confidence 3468888863322344432 32 223333347889999999976 47779999873
No 41
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=39.33 E-value=90 Score=20.42 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=11.3
Q ss_pred CCCcceEEeeeeCCC
Q 043463 44 DPGVDLTFECKSRDD 58 (149)
Q Consensus 44 ~~~~~L~vhCkS~d~ 58 (149)
..|..+.++|.+...
T Consensus 14 ~~G~~VtL~C~~~~~ 28 (91)
T cd05751 14 PLGKPVTLRCQGPYG 28 (91)
T ss_pred CCCCcEEEEEecCCC
Confidence 456789999988533
No 42
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=38.62 E-value=27 Score=21.46 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=12.7
Q ss_pred chhHHHHHHHHHHHHHHhh
Q 043463 3 SFTIHDLLVILFVFPLFAY 21 (149)
Q Consensus 3 ~~~~~f~~~~~v~~~~f~~ 21 (149)
+++ .+++++++++++||-
T Consensus 2 g~~-El~iI~vvalllfGp 19 (53)
T PF02416_consen 2 GFP-ELLIILVVALLLFGP 19 (53)
T ss_dssp -HH-HHHHHHHHHHHHS-T
T ss_pred CHH-HHHHHHHHHHHHhCc
Confidence 344 778888899999983
No 43
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=35.51 E-value=31 Score=24.60 Aligned_cols=17 Identities=0% Similarity=0.288 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHHHHHh
Q 043463 3 SFTIHDLLVILFVFPLFA 20 (149)
Q Consensus 3 ~~~~~f~~~~~v~~~~f~ 20 (149)
++. .++++++|++++||
T Consensus 5 G~~-ElliIlvVallvfG 21 (108)
T PRK14858 5 GMP-ELIVILVIALIVIG 21 (108)
T ss_pred cHH-HHHHHHHHHHHhcC
Confidence 444 88999999999998
No 44
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=34.42 E-value=90 Score=28.45 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=43.9
Q ss_pred ccceEEEEEeCCCCCcceEEeeee---CCCCC--c----ceEecCCCEEEEEEeeCCCCcceEEEEeE
Q 043463 32 EDVRHIRITNKIDPGVDLTFECKS---RDDDF--G----KKVLHYNTYWEFQFRPNFWGTTRYYCWFA 90 (149)
Q Consensus 32 ~~~~~V~I~N~L~~~~~L~vhCkS---~d~Dl--G----~~~L~~g~~~~f~F~~~~~~~T~f~C~f~ 90 (149)
+..+.|++.|+..-...+.+|=.. .+.|- + ...|.||+.+.+.|..+-.|+-.|.|+..
T Consensus 506 Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l 573 (587)
T TIGR01480 506 GERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHML 573 (587)
T ss_pred CCEEEEEEECCCCCCcceeEcCceeeeecCCCcccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCH
Confidence 357789999988765678887754 12221 1 24689999999999987788889999874
No 45
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=33.44 E-value=39 Score=20.28 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHh
Q 043463 4 FTIHDLLVILFVFPLFA 20 (149)
Q Consensus 4 ~~~~f~~~~~v~~~~f~ 20 (149)
+. .+++++++++++|+
T Consensus 4 ~~-ElliI~vi~llvfG 19 (47)
T TIGR01411 4 PP-EWLIILVVILLLFG 19 (47)
T ss_pred HH-HHHHHHHHHHHhcC
Confidence 44 78888889999998
No 46
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=33.44 E-value=1.8e+02 Score=20.69 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=36.1
Q ss_pred ceEEEEEeCCC-CCcceEEeeee-CCCCCcceEecCCCEEEEEEeeCCCCcceEEEEeEeCCcee
Q 043463 34 VRHIRITNKID-PGVDLTFECKS-RDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFK 96 (149)
Q Consensus 34 ~~~V~I~N~L~-~~~~L~vhCkS-~d~DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f~w~~~~~ 96 (149)
--+|+.+|+-. ....+.. .. ..-|.+...+.+|++|++.|.. .|+=.|+|.......++
T Consensus 49 GdTVtw~~~~d~~~HnV~s--~~~~~f~s~~~~~~~G~t~s~Tf~~--~G~Y~Y~C~pH~~~gM~ 109 (115)
T TIGR03102 49 GTTVVWEWTGEGGGHNVVS--DGDGDLDESERVSEEGTTYEHTFEE--PGIYLYVCVPHEALGMK 109 (115)
T ss_pred CCEEEEEECCCCCCEEEEE--CCCCCccccccccCCCCEEEEEecC--CcEEEEEccCCCCCCCE
Confidence 34688886542 2233331 11 1123344456889999999975 58889999977654444
No 47
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=30.75 E-value=44 Score=21.27 Aligned_cols=18 Identities=17% Similarity=0.434 Sum_probs=14.8
Q ss_pred chhHHHHHHHHHHHHHHhh
Q 043463 3 SFTIHDLLVILFVFPLFAY 21 (149)
Q Consensus 3 ~~~~~f~~~~~v~~~~f~~ 21 (149)
+++ .+++++++++++|+.
T Consensus 6 g~~-ElliI~vi~llvfGp 23 (61)
T PRK14861 6 GFP-GLILILVVALIIFGP 23 (61)
T ss_pred CHH-HHHHHHHHHHHhcCc
Confidence 455 889999999999983
No 48
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=29.57 E-value=35 Score=29.73 Aligned_cols=19 Identities=16% Similarity=0.266 Sum_probs=15.9
Q ss_pred CchhHHHHHHHHHHHHHHh
Q 043463 2 GSFTIHDLLVILFVFPLFA 20 (149)
Q Consensus 2 ~~~~~~f~~~~~v~~~~f~ 20 (149)
+|.+|.+||+=+|++||||
T Consensus 32 ~SLIQ~LIIlgLVLFmVYG 50 (442)
T PF06637_consen 32 VSLIQFLIILGLVLFMVYG 50 (442)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 4677888888889999998
No 49
>PF11523 DUF3223: Protein of unknown function (DUF3223); InterPro: IPR021602 This family of proteins has no known function. ; PDB: 2K0M_A.
Probab=29.11 E-value=39 Score=22.28 Aligned_cols=12 Identities=25% Similarity=0.811 Sum_probs=10.1
Q ss_pred ceEEEEecCccE
Q 043463 112 HCVWTIQPDGPC 123 (149)
Q Consensus 112 ~c~W~~r~DGiy 123 (149)
.|.|.+|.||--
T Consensus 56 rCF~vvR~DGs~ 67 (76)
T PF11523_consen 56 RCFFVVRTDGSE 67 (76)
T ss_dssp EEEEEEETTS-E
T ss_pred eEEEEEEeCCCe
Confidence 799999999964
No 50
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=28.73 E-value=49 Score=22.76 Aligned_cols=17 Identities=6% Similarity=0.360 Sum_probs=13.9
Q ss_pred chhHHHHHHHHHHHHHHh
Q 043463 3 SFTIHDLLVILFVFPLFA 20 (149)
Q Consensus 3 ~~~~~f~~~~~v~~~~f~ 20 (149)
++. .++++++|++++||
T Consensus 7 G~~-ElliIlvVaLlvfG 23 (90)
T PRK14857 7 GLP-EMAVILVIALLVFG 23 (90)
T ss_pred cHH-HHHHHHHHHHHHcC
Confidence 444 78888889999998
No 51
>PRK00708 sec-independent translocase; Provisional
Probab=27.46 E-value=45 Score=26.48 Aligned_cols=18 Identities=6% Similarity=0.220 Sum_probs=14.7
Q ss_pred CchhHHHHHHHHHHHHHHh
Q 043463 2 GSFTIHDLLVILFVFPLFA 20 (149)
Q Consensus 2 ~~~~~~f~~~~~v~~~~f~ 20 (149)
.+|. .++++++|+|+|||
T Consensus 4 IG~~-ELlvI~vVaLvV~G 21 (209)
T PRK00708 4 IGWS-ELLVIAIVLIVVVG 21 (209)
T ss_pred ccHH-HHHHHHHHHHhhcC
Confidence 3555 88888999999998
No 52
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=27.38 E-value=74 Score=21.41 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=20.7
Q ss_pred eEecCCCEEEEEEeeCCCCcceEEEEe
Q 043463 63 KVLHYNTYWEFQFRPNFWGTTRYYCWF 89 (149)
Q Consensus 63 ~~L~~g~~~~f~F~~~~~~~T~f~C~f 89 (149)
..+.+|+.+.+.|.. .|+-.|.|.-
T Consensus 62 ~~~~~G~~~~~tF~~--~G~y~y~C~P 86 (99)
T PF00127_consen 62 PLLAPGETYSVTFTK--PGTYEYYCTP 86 (99)
T ss_dssp EEBSTTEEEEEEEES--SEEEEEEETT
T ss_pred eecCCCCEEEEEeCC--CeEEEEEcCC
Confidence 357899999999994 4777999985
No 53
>PRK01770 sec-independent translocase; Provisional
Probab=27.33 E-value=48 Score=25.53 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=14.9
Q ss_pred CchhHHHHHHHHHHHHHHh
Q 043463 2 GSFTIHDLLVILFVFPLFA 20 (149)
Q Consensus 2 ~~~~~~f~~~~~v~~~~f~ 20 (149)
.+|. .++++++|+|+|||
T Consensus 4 IG~~-ELllI~vVaLlV~G 21 (171)
T PRK01770 4 IGFS-ELLLVFVIGLVVLG 21 (171)
T ss_pred ccHH-HHHHHHHHHHHhcC
Confidence 4566 88999999999998
No 54
>CHL00106 petL cytochrome b6/f complex subunit VI
Probab=26.34 E-value=80 Score=17.48 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=6.9
Q ss_pred CCchhHHHHHHHH
Q 043463 1 MGSFTIHDLLVIL 13 (149)
Q Consensus 1 m~~~~~~f~~~~~ 13 (149)
|.+++ +++.+++
T Consensus 1 M~tii-sYf~~L~ 12 (31)
T CHL00106 1 MLTIT-SYFGFLL 12 (31)
T ss_pred ChhHH-HHHHHHH
Confidence 77777 4444443
No 55
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=23.44 E-value=36 Score=24.80 Aligned_cols=19 Identities=21% Similarity=0.656 Sum_probs=12.0
Q ss_pred CchhHHHHHHHHHHHHHHh
Q 043463 2 GSFTIHDLLVILFVFPLFA 20 (149)
Q Consensus 2 ~~~~~~f~~~~~v~~~~f~ 20 (149)
+||.--+|++++|++++|+
T Consensus 63 gsfiatliillviffviy~ 81 (150)
T PF06084_consen 63 GSFIATLIILLVIFFVIYS 81 (150)
T ss_pred chHHHHHHHHHHHhheeEe
Confidence 3566566666666666665
No 56
>PRK00404 tatB sec-independent translocase; Provisional
Probab=23.11 E-value=67 Score=23.99 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHHHHh
Q 043463 3 SFTIHDLLVILFVFPLFA 20 (149)
Q Consensus 3 ~~~~~f~~~~~v~~~~f~ 20 (149)
+|. .++++++|+|++||
T Consensus 5 G~~-ELlvI~VVaLlV~G 21 (141)
T PRK00404 5 SFS-ELLLVGLVALLVLG 21 (141)
T ss_pred cHH-HHHHHHHHHHHhcC
Confidence 455 78888889999998
No 57
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=22.77 E-value=1.4e+02 Score=16.04 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=14.3
Q ss_pred CCCEEEEEEeeCCCCcceEEEEeEe
Q 043463 67 YNTYWEFQFRPNFWGTTRYYCWFAW 91 (149)
Q Consensus 67 ~g~~~~f~F~~~~~~~T~f~C~f~w 91 (149)
++......|+++ |++++++.-+.
T Consensus 8 ~~~~~~p~~SpD--Gk~i~f~s~~~ 30 (39)
T PF07676_consen 8 PGDDGSPAWSPD--GKYIYFTSNRN 30 (39)
T ss_dssp SSSEEEEEE-TT--SSEEEEEEECT
T ss_pred CccccCEEEecC--CCEEEEEecCC
Confidence 445666677776 67777776544
No 58
>PF11284 DUF3085: Protein of unknown function (DUF3085); InterPro: IPR021436 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.77 E-value=79 Score=21.69 Aligned_cols=16 Identities=13% Similarity=0.632 Sum_probs=14.2
Q ss_pred EEEEecCccEEeccCC
Q 043463 114 VWTIQPDGPCMLNKAE 129 (149)
Q Consensus 114 ~W~~r~DGiy~~~~~~ 129 (149)
.|.+++.|+|+..+..
T Consensus 3 l~LvkD~GVYlmsn~~ 18 (90)
T PF11284_consen 3 LWLVKDHGVYLMSNGG 18 (90)
T ss_pred EEEEeCCeEEEEeCCC
Confidence 6999999999999855
No 59
>PRK03100 sec-independent translocase; Provisional
Probab=20.62 E-value=77 Score=23.47 Aligned_cols=17 Identities=6% Similarity=0.251 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHHHHHh
Q 043463 3 SFTIHDLLVILFVFPLFA 20 (149)
Q Consensus 3 ~~~~~f~~~~~v~~~~f~ 20 (149)
+++ .++++++|+|++||
T Consensus 6 G~~-EllvI~vVaLvv~G 22 (136)
T PRK03100 6 GWG-EMLVLVVAGLVILG 22 (136)
T ss_pred cHH-HHHHHHHHHHhhcC
Confidence 455 78888999999998
No 60
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.62 E-value=3.1e+02 Score=25.03 Aligned_cols=68 Identities=15% Similarity=0.289 Sum_probs=38.7
Q ss_pred ceEEEEEeCCCCCcceEEee---------eeCCCCCcce-EecCCCEEEEEEeeC-CCCcceEEEEeEeCCc---eeEEE
Q 043463 34 VRHIRITNKIDPGVDLTFEC---------KSRDDDFGKK-VLHYNTYWEFQFRPN-FWGTTRYYCWFAWRNE---FKWFD 99 (149)
Q Consensus 34 ~~~V~I~N~L~~~~~L~vhC---------kS~d~DlG~~-~L~~g~~~~f~F~~~-~~~~T~f~C~f~w~~~---~~~fd 99 (149)
...|.++|.+... +.+|= +. |--.+.+ -++||+.|.+.|... --|+=-|.=+..|... .-.|.
T Consensus 68 ~ivV~v~N~~~~~--~sihWhGv~q~kn~w~-DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~li 144 (563)
T KOG1263|consen 68 TIVVNVVNRLDEP--FSIHWHGVRQRKNPWQ-DGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALI 144 (563)
T ss_pred EEEEEEEeCCCCc--eEEEeccccccCCccc-cCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEE
Confidence 3447788887643 44442 22 3344455 489999999999976 3443233344444322 22566
Q ss_pred EEeec
Q 043463 100 IYDHN 104 (149)
Q Consensus 100 ~y~~~ 104 (149)
|+...
T Consensus 145 I~~~~ 149 (563)
T KOG1263|consen 145 INPRP 149 (563)
T ss_pred EcCCc
Confidence 66554
No 61
>PF15240 Pro-rich: Proline-rich
Probab=20.47 E-value=71 Score=24.80 Aligned_cols=18 Identities=6% Similarity=0.159 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhhhcccC
Q 043463 8 DLLVILFVFPLFAYVIGEDS 27 (149)
Q Consensus 8 f~~~~~v~~~~f~~~~~c~~ 27 (149)
|++||+++|++++ +|..+
T Consensus 2 LlVLLSvALLALS--SAQ~~ 19 (179)
T PF15240_consen 2 LLVLLSVALLALS--SAQST 19 (179)
T ss_pred hhHHHHHHHHHhh--hcccc
Confidence 4555666666665 45433
No 62
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=20.31 E-value=2.5e+02 Score=19.01 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=20.9
Q ss_pred cceEEEEEeCCCCCcceEEeeee------------CCCCCcceE-ecCCCEEEEE
Q 043463 33 DVRHIRITNKIDPGVDLTFECKS------------RDDDFGKKV-LHYNTYWEFQ 74 (149)
Q Consensus 33 ~~~~V~I~N~L~~~~~L~vhCkS------------~d~DlG~~~-L~~g~~~~f~ 74 (149)
...+|+|.|.-....+|.=+-|- ++.-+|.+- |.||+.|.++
T Consensus 14 f~Y~I~I~N~~~~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 14 FAYRIRIENHSDESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYT 68 (90)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEc
Confidence 35788899866543334333332 222344443 7999977764
No 63
>PF05115 PetL: Cytochrome B6-F complex subunit VI (PetL); InterPro: IPR007802 This family consists of several Cytochrome B6-F complex subunit VI (PetL) proteins found in a number of plant species. PetL is one of the small subunits which make up the cytochrome b(6)f complex. PetL is not absolutely required for either the accumulation or for the function of cytochrome b6f; in its absence, however, the complex becomes unstable in vivo in aging cells and labile in vitro. It has been suggested that the N terminus of the protein is likely to lie in the thylakoid lumen [].; GO: 0009055 electron carrier activity, 0009512 cytochrome b6f complex; PDB: 2ZT9_E 1Q90_L.
Probab=20.07 E-value=91 Score=17.27 Aligned_cols=12 Identities=17% Similarity=0.094 Sum_probs=5.7
Q ss_pred CCchhHHHHHHHH
Q 043463 1 MGSFTIHDLLVIL 13 (149)
Q Consensus 1 m~~~~~~f~~~~~ 13 (149)
|.+++ +++.+++
T Consensus 1 M~tii-sYf~fL~ 12 (31)
T PF05115_consen 1 MLTII-SYFGFLL 12 (31)
T ss_dssp -HHHH-HHHHHHH
T ss_pred ChhHH-HHHHHHH
Confidence 66666 4444443
Done!