BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043467
         (90 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana
           GN=At4g24660 PE=1 SV=1
          Length = 220

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 46/55 (83%), Gaps = 1/55 (1%)

Query: 29  VRYAECQKNHAANIGGYAVDGCREFMASGENGT-GALTCAACGCHRNFHRREEET 82
           +RY EC KNHA NIGG+AVDGC EFM SGE+GT  AL CAACGCHRNFHR+E E+
Sbjct: 47  IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETES 101


>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana
           GN=At5g65410 PE=1 SV=1
          Length = 279

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/51 (70%), Positives = 40/51 (78%), Gaps = 1/51 (1%)

Query: 30  RYAECQKNHAANIGGYAVDGCREFMASGENGT-GALTCAACGCHRNFHRRE 79
           R+ EC KN A NIGG+AVDGC EFM +G  GT  AL CAACGCHRNFHR+E
Sbjct: 74  RFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKE 124


>sp|Q9SEZ1|HB29_ARATH Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1
          SV=1
          Length = 242

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 39/57 (68%), Gaps = 3/57 (5%)

Query: 31 YAECQKNHAANIGGYAVDGCREFMASG---ENGTGALTCAACGCHRNFHRREEETEL 84
          Y EC KNHAAN+GG+A+DGC EFM S         +L CAACGCHRNFHRR+    L
Sbjct: 31 YKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRRDPSENL 87


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.129    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,005,592
Number of Sequences: 539616
Number of extensions: 992107
Number of successful extensions: 2603
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2597
Number of HSP's gapped (non-prelim): 4
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)