Query 043467
Match_columns 90
No_of_seqs 109 out of 186
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 08:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fnf_X Putative RAS effector N 51.2 9.2 0.00031 23.3 2.1 32 43-79 34-67 (72)
2 1faq_A RAF-1; transferase, ser 48.6 12 0.0004 20.6 2.1 29 45-79 15-45 (52)
3 1k81_A EIF-2-beta, probable tr 48.0 5.1 0.00017 22.1 0.5 14 61-74 19-32 (36)
4 3uej_A NPKC-delta, protein kin 47.4 8.9 0.0003 22.4 1.6 33 45-79 21-55 (65)
5 2enz_A NPKC-theta, protein kin 46.8 16 0.00054 21.3 2.6 35 44-80 23-59 (65)
6 1nee_A EIF-2-beta, probable tr 40.5 9.4 0.00032 26.5 1.1 16 60-75 120-135 (138)
7 1rfh_A RAS association (ralgds 38.1 15 0.00051 21.4 1.5 27 45-76 23-51 (59)
8 2yuu_A NPKC-delta, protein kin 35.6 26 0.0009 21.3 2.5 34 44-79 28-63 (83)
9 2enn_A NPKC-theta, protein kin 35.2 23 0.0008 21.4 2.2 35 44-80 34-70 (77)
10 2eli_A Protein kinase C alpha 34.0 27 0.00093 21.5 2.4 35 44-80 28-64 (85)
11 1ptq_A Protein kinase C delta 33.2 19 0.00065 19.5 1.4 31 46-78 13-45 (50)
12 2g2k_A EIF-5, eukaryotic trans 31.5 16 0.00056 26.4 1.1 18 60-77 116-133 (170)
13 4b6d_A RAC GTPase-activating p 31.4 31 0.0011 20.5 2.2 33 45-80 20-54 (61)
14 1f62_A Transcription factor WS 30.8 26 0.00087 19.3 1.7 16 62-79 14-29 (51)
15 3j20_Y 30S ribosomal protein S 30.1 19 0.00064 21.0 1.0 18 50-70 25-44 (50)
16 1y8f_A UNC-13 homolog A, MUNC1 29.9 19 0.00064 21.1 1.0 34 44-79 24-59 (66)
17 2e9h_A EIF-5, eukaryotic trans 28.9 17 0.00057 26.0 0.8 16 62-77 125-140 (157)
18 3cw2_K Translation initiation 27.7 18 0.0006 25.2 0.7 15 61-75 122-136 (139)
19 2d74_B Translation initiation 26.6 25 0.00087 24.7 1.4 17 60-76 122-138 (148)
20 1mm2_A MI2-beta; PHD, zinc fin 24.8 35 0.0012 19.9 1.6 17 62-80 20-36 (61)
21 2row_A RHO-associated protein 24.1 25 0.00087 22.4 0.9 33 46-78 37-71 (84)
22 2ebv_A Nuclear pore complex pr 22.4 40 0.0014 20.5 1.5 10 62-71 44-53 (57)
23 2k1p_A Zinc finger RAN-binding 22.1 38 0.0013 18.0 1.2 17 63-80 6-22 (33)
24 3gj5_B Nuclear pore complex pr 21.0 28 0.00096 19.2 0.6 9 62-70 20-28 (34)
No 1
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=51.16 E-value=9.2 Score=23.33 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=22.3
Q ss_pred CCccccCccccccCCCCCCCceeecCc--Cccccccccc
Q 043467 43 GGYAVDGCREFMASGENGTGALTCAAC--GCHRNFHRRE 79 (90)
Q Consensus 43 Gg~avDGCgEFm~~g~egt~aL~CaAC--gCHRnFHRre 79 (90)
....=|=|++|| . ...++|..| .||+.=+.+.
T Consensus 34 ~pt~C~~C~~~l--~---~qG~kC~~C~~~cHkkC~~~V 67 (72)
T 2fnf_X 34 GPGWCDLCGREV--L---RQALRCANCKFTCHSECRSLI 67 (72)
T ss_dssp SCCBCTTTSSBC--S---SCCEECTTSSCEECTGGGGGC
T ss_pred CCcchhhhhHHH--H---hCcCccCCCCCeechhhhccC
Confidence 344568899999 2 257999999 4676655443
No 2
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=48.57 E-value=12 Score=20.64 Aligned_cols=29 Identities=24% Similarity=0.662 Sum_probs=20.1
Q ss_pred ccccCccccccCCCCCCCceeecCcC--ccccccccc
Q 043467 45 YAVDGCREFMASGENGTGALTCAACG--CHRNFHRRE 79 (90)
Q Consensus 45 ~avDGCgEFm~~g~egt~aL~CaACg--CHRnFHRre 79 (90)
..=|=|++||- ..++|..|+ ||+.-+.+.
T Consensus 15 t~C~~C~~~l~------qG~~C~~C~~~~H~~C~~~v 45 (52)
T 1faq_A 15 AFCDICQKFLL------NGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp EECTTSSSEEC------SEEECTTTTCCBCSTTSSSS
T ss_pred cCCCCcccccc------cCCEeCCCCCeEChhHHhhC
Confidence 33467888886 469999985 666655543
No 3
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=47.99 E-value=5.1 Score=22.07 Aligned_cols=14 Identities=43% Similarity=0.831 Sum_probs=11.1
Q ss_pred CCceeecCcCcccc
Q 043467 61 TGALTCAACGCHRN 74 (90)
Q Consensus 61 t~aL~CaACgCHRn 74 (90)
.-.|+|.|||-++.
T Consensus 19 ~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 19 VHLLKCMACGAIRP 32 (36)
T ss_dssp EEEEEEETTTEEEE
T ss_pred cEEEEhhcCCCccc
Confidence 36799999997764
No 4
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=47.44 E-value=8.9 Score=22.36 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=22.1
Q ss_pred ccccCccccccCCCCCCCceeecCcC--ccccccccc
Q 043467 45 YAVDGCREFMASGENGTGALTCAACG--CHRNFHRRE 79 (90)
Q Consensus 45 ~avDGCgEFm~~g~egt~aL~CaACg--CHRnFHRre 79 (90)
..=|=|++||..- +...++|..|+ ||+.-+.+.
T Consensus 21 t~C~~C~~~l~Gl--~~qg~~C~~C~~~~Hk~C~~~v 55 (65)
T 3uej_A 21 TFCDHCGSLLWGL--VKQGLKCEDCGMNVHHKCREKV 55 (65)
T ss_dssp CBCTTTCCBCCSS--SSCEEEETTTCCEECHHHHTTS
T ss_pred CcccccChhhhcc--CceeeECCCCCCeEchhHhhhC
Confidence 3457899999642 22689999986 566555443
No 5
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=46.76 E-value=16 Score=21.30 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=24.1
Q ss_pred CccccCccccccCCCCCCCceeecCcC--cccccccccc
Q 043467 44 GYAVDGCREFMASGENGTGALTCAACG--CHRNFHRREE 80 (90)
Q Consensus 44 g~avDGCgEFm~~g~egt~aL~CaACg--CHRnFHRre~ 80 (90)
...=|=|++||-.- +...++|..|+ ||+.-+.+..
T Consensus 23 pt~C~~C~~~l~Gl--~~qg~~C~~C~~~~Hk~C~~~v~ 59 (65)
T 2enz_A 23 PTFCEHCGTLLWGL--ARQGLKCDACGMNVHHRCQTKVA 59 (65)
T ss_dssp CCBCSSSCCBCCCS--SSCSEEESSSCCEECTTTTTTSC
T ss_pred CcCchhcChhheec--CCcccccCCCCCccCHhHHhhCc
Confidence 34457899999642 22689999994 7777766643
No 6
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=40.53 E-value=9.4 Score=26.54 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=12.9
Q ss_pred CCCceeecCcCccccc
Q 043467 60 GTGALTCAACGCHRNF 75 (90)
Q Consensus 60 gt~aL~CaACgCHRnF 75 (90)
+.-.|+|.|||-+|..
T Consensus 120 r~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 120 RISLLKCEACGAKAPL 135 (138)
T ss_dssp TTTEEECSTTSCCCCS
T ss_pred CeEEEEccCCCCCccc
Confidence 3478999999998864
No 7
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=38.08 E-value=15 Score=21.37 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=18.9
Q ss_pred ccccCccccccCCCCCCCceeecCcC--cccccc
Q 043467 45 YAVDGCREFMASGENGTGALTCAACG--CHRNFH 76 (90)
Q Consensus 45 ~avDGCgEFm~~g~egt~aL~CaACg--CHRnFH 76 (90)
.-=|=|++|| . ...++|..|+ ||+.=+
T Consensus 23 t~C~~C~~~i--~---kqg~kC~~C~~~cH~kC~ 51 (59)
T 1rfh_A 23 GWCDLCGREV--L---RQALRCANCKFTCHSECR 51 (59)
T ss_dssp EECTTTCSEE--C---SCCEECTTTSCEECHHHH
T ss_pred eEchhcchhh--h---hCccEeCCCCCeEehhhh
Confidence 4458899999 2 2679999984 555433
No 8
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.64 E-value=26 Score=21.33 Aligned_cols=34 Identities=15% Similarity=0.365 Sum_probs=23.8
Q ss_pred CccccCccccccCCCCCCCceeecCcC--ccccccccc
Q 043467 44 GYAVDGCREFMASGENGTGALTCAACG--CHRNFHRRE 79 (90)
Q Consensus 44 g~avDGCgEFm~~g~egt~aL~CaACg--CHRnFHRre 79 (90)
...=|=|++||-.- +...++|..|+ ||+.-+.+.
T Consensus 28 pt~C~~C~~~lwGl--~kqg~~C~~C~~~~Hk~C~~~v 63 (83)
T 2yuu_A 28 PTFCSVCKDFVWGL--NKQGYKCRQCNAAIHKKCIDKI 63 (83)
T ss_dssp CCCCSSSCCCCCSS--SCCEEEETTTCCEECTTGGGTC
T ss_pred CcChhhcChhhccc--cccccccCCcCCeeChhhhhhC
Confidence 34557899999742 12689999984 777666654
No 9
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=35.22 E-value=23 Score=21.41 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=24.7
Q ss_pred CccccCccccccCCCCCCCceeecCcC--cccccccccc
Q 043467 44 GYAVDGCREFMASGENGTGALTCAACG--CHRNFHRREE 80 (90)
Q Consensus 44 g~avDGCgEFm~~g~egt~aL~CaACg--CHRnFHRre~ 80 (90)
...=|=|++||-.- +...++|..|+ ||+.-+.+..
T Consensus 34 pt~C~~C~~~lwGl--~kqG~~C~~C~~~~Hk~C~~~v~ 70 (77)
T 2enn_A 34 PTFCSVCHEFVWGL--NKQGYQCRQCNAAIHKKCIDKVI 70 (77)
T ss_dssp CEECSSSCCEECCT--TCCEEECSSSCCEEESGGGSSCC
T ss_pred CcCccccChhhccc--cccccCcCCCCCcCCHhHHhhCc
Confidence 34457899999852 22689999994 7777776643
No 10
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.99 E-value=27 Score=21.48 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=24.2
Q ss_pred CccccCccccccCCCCCCCceeecCc--Ccccccccccc
Q 043467 44 GYAVDGCREFMASGENGTGALTCAAC--GCHRNFHRREE 80 (90)
Q Consensus 44 g~avDGCgEFm~~g~egt~aL~CaAC--gCHRnFHRre~ 80 (90)
...=|=|++||..-. ...++|..| .||+.-+.+..
T Consensus 28 pt~C~~C~~~l~Gl~--kqG~~C~~C~~~~Hk~C~~~v~ 64 (85)
T 2eli_A 28 PTFCDHCGSLLYGLI--HQGMKCDTCDMNVHKQCVINVP 64 (85)
T ss_dssp CCBCSSSCCBCCCSS--SCEEECSSSCCEEETTTTTTSC
T ss_pred CcCCcccCccccccc--cCCCcCCCcCCccCHhHHhhcC
Confidence 445678999996421 268999998 47777666643
No 11
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=33.23 E-value=19 Score=19.51 Aligned_cols=31 Identities=23% Similarity=0.527 Sum_probs=20.5
Q ss_pred cccCccccccCCCCCCCceeecCcC--cccccccc
Q 043467 46 AVDGCREFMASGENGTGALTCAACG--CHRNFHRR 78 (90)
Q Consensus 46 avDGCgEFm~~g~egt~aL~CaACg--CHRnFHRr 78 (90)
.=|=|+++|-+- +..+++|..|+ ||+.-+.+
T Consensus 13 ~C~~C~~~l~g~--~~qg~~C~~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 13 FCDHCGSLLWGL--VKQGLKCEDCGMNVHHKCREK 45 (50)
T ss_dssp BCTTTCCBCCSS--SSCEEEETTTCCEECHHHHTT
T ss_pred CcCCCCceeecc--CCccCEeCCCCCeECHHHhhh
Confidence 346789998542 22689999984 66655444
No 12
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=31.50 E-value=16 Score=26.36 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=14.3
Q ss_pred CCCceeecCcCccccccc
Q 043467 60 GTGALTCAACGCHRNFHR 77 (90)
Q Consensus 60 gt~aL~CaACgCHRnFHR 77 (90)
+.-.|+|.|||-+|.-.-
T Consensus 116 r~~~l~C~ACGa~~~V~~ 133 (170)
T 2g2k_A 116 QTIGNSCKACGYRGMLDT 133 (170)
T ss_dssp TEEEEEETTTCCCCCSCS
T ss_pred CEEEEEccccCCcccccc
Confidence 336799999999988753
No 13
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=31.35 E-value=31 Score=20.47 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=22.9
Q ss_pred ccccCccccccCCCCCCCceeecCcC--cccccccccc
Q 043467 45 YAVDGCREFMASGENGTGALTCAACG--CHRNFHRREE 80 (90)
Q Consensus 45 ~avDGCgEFm~~g~egt~aL~CaACg--CHRnFHRre~ 80 (90)
--=|=|++.+-- |..+++|..|+ ||..=|.+..
T Consensus 20 ~~C~~Cg~~i~~---gkq~~kC~dC~~~cH~~C~~~~~ 54 (61)
T 4b6d_A 20 ESCVPCGKRIKF---GKLSLKCRDCRVVSHPECRDRCP 54 (61)
T ss_dssp EECTTTCCEECT---TCEEEEESSSSCEECGGGGGGSC
T ss_pred cccccccCEEEE---eeEeeECCCCCCeEchhHhhcCC
Confidence 334667777742 34789999999 8887766543
No 14
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.81 E-value=26 Score=19.31 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=12.5
Q ss_pred CceeecCcCccccccccc
Q 043467 62 GALTCAACGCHRNFHRRE 79 (90)
Q Consensus 62 ~aL~CaACgCHRnFHRre 79 (90)
.-|.|. +|.|.||..=
T Consensus 14 ~ll~Cd--~C~~~~H~~C 29 (51)
T 1f62_A 14 KLILCD--ECNKAFHLFC 29 (51)
T ss_dssp CCEECT--TTCCEECHHH
T ss_pred CEEECC--CCChhhCccc
Confidence 678899 5669999763
No 15
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.13 E-value=19 Score=20.96 Aligned_cols=18 Identities=39% Similarity=0.946 Sum_probs=13.7
Q ss_pred ccc--cccCCCCCCCceeecCcC
Q 043467 50 CRE--FMASGENGTGALTCAACG 70 (90)
Q Consensus 50 CgE--Fm~~g~egt~aL~CaACg 70 (90)
||. ||.... +.+.|..||
T Consensus 25 CG~~~fm~~~~---~R~~C~kCG 44 (50)
T 3j20_Y 25 CGPGVFMADHG---DRWACGKCG 44 (50)
T ss_dssp SCSSCEEEECS---SEEECSSSC
T ss_pred CCCceEEecCC---CeEECCCCC
Confidence 666 888643 689999987
No 16
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=29.91 E-value=19 Score=21.10 Aligned_cols=34 Identities=15% Similarity=0.370 Sum_probs=22.7
Q ss_pred CccccCccccccCCCCCCCceeecCc--Cccccccccc
Q 043467 44 GYAVDGCREFMASGENGTGALTCAAC--GCHRNFHRRE 79 (90)
Q Consensus 44 g~avDGCgEFm~~g~egt~aL~CaAC--gCHRnFHRre 79 (90)
...=|=|++||..- ....++|..| .||+.-+.+.
T Consensus 24 pt~C~~C~~~l~Gl--~~qg~~C~~C~~~~Hk~C~~~v 59 (66)
T 1y8f_A 24 PTYCYECEGLLWGI--ARQGMRCTECGVKCHEKCQDLL 59 (66)
T ss_dssp CCCCTTTCCCCCSS--CCEEEEETTTCCEECTTHHHHS
T ss_pred CcChhhcChhhccc--CcceeEcCCCCCeeCHHHHhhC
Confidence 34457899999642 1268999998 4676655543
No 17
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.90 E-value=17 Score=25.98 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=13.4
Q ss_pred CceeecCcCccccccc
Q 043467 62 GALTCAACGCHRNFHR 77 (90)
Q Consensus 62 ~aL~CaACgCHRnFHR 77 (90)
-.|+|.|||-+|...-
T Consensus 125 ~~l~C~ACGa~~~V~~ 140 (157)
T 2e9h_A 125 IGNSCKACGYRGMLDT 140 (157)
T ss_dssp EEEECSSSCCEEECCC
T ss_pred EEEEccCCCCCCcccc
Confidence 6899999999987653
No 18
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=27.67 E-value=18 Score=25.18 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=6.7
Q ss_pred CCceeecCcCccccc
Q 043467 61 TGALTCAACGCHRNF 75 (90)
Q Consensus 61 t~aL~CaACgCHRnF 75 (90)
.-.|+|.|||-+|.-
T Consensus 122 ~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 122 SWYIVCLACGAQTPV 136 (139)
T ss_dssp TTTSSCCC-------
T ss_pred eEEEEecCCCCCCcc
Confidence 378999999988753
No 19
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=26.65 E-value=25 Score=24.69 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=13.3
Q ss_pred CCCceeecCcCcccccc
Q 043467 60 GTGALTCAACGCHRNFH 76 (90)
Q Consensus 60 gt~aL~CaACgCHRnFH 76 (90)
+.-.|+|.|||-.|.-.
T Consensus 122 r~~~l~C~ACGa~~~V~ 138 (148)
T 2d74_B 122 RFHFLKCEACGAETPIQ 138 (148)
T ss_dssp SSBCCCCSSSCCCCCCC
T ss_pred CEEEEEecCCCCCcccc
Confidence 34789999999988653
No 20
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=24.84 E-value=35 Score=19.86 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=12.0
Q ss_pred CceeecCcCcccccccccc
Q 043467 62 GALTCAACGCHRNFHRREE 80 (90)
Q Consensus 62 ~aL~CaACgCHRnFHRre~ 80 (90)
+-|.|.. |.|.||..=+
T Consensus 20 ~ll~Cd~--C~~~fH~~Cl 36 (61)
T 1mm2_A 20 ELLCCDT--CPSSYHIHCL 36 (61)
T ss_dssp SCBCCSS--SCCCBCSSSS
T ss_pred CEEEcCC--CCHHHccccc
Confidence 4566774 7899998744
No 21
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=24.14 E-value=25 Score=22.44 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=23.1
Q ss_pred cccCccccccCCCCCCCceeecCc--Ccccccccc
Q 043467 46 AVDGCREFMASGENGTGALTCAAC--GCHRNFHRR 78 (90)
Q Consensus 46 avDGCgEFm~~g~egt~aL~CaAC--gCHRnFHRr 78 (90)
.=|=|++|+-.-..-+.+++|..| .||+--|.|
T Consensus 37 ~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~k 71 (84)
T 2row_A 37 NCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDK 71 (84)
T ss_dssp ECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHHH
T ss_pred chhhcCHhhhccccCCCCCEecCCCCccchhHhCC
Confidence 347799998753221238999999 778777775
No 22
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.42 E-value=40 Score=20.50 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=8.4
Q ss_pred CceeecCcCc
Q 043467 62 GALTCAACGC 71 (90)
Q Consensus 62 ~aL~CaACgC 71 (90)
++++|.||+-
T Consensus 44 ~~~kC~ACet 53 (57)
T 2ebv_A 44 EDNKCVSCMS 53 (57)
T ss_dssp SCSBCSSSCC
T ss_pred CCceeeEcCC
Confidence 7899999973
No 23
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=22.11 E-value=38 Score=17.98 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=12.8
Q ss_pred ceeecCcCcccccccccc
Q 043467 63 ALTCAACGCHRNFHRREE 80 (90)
Q Consensus 63 aL~CaACgCHRnFHRre~ 80 (90)
.-+|..|+- .||.+|..
T Consensus 6 DW~C~~C~~-~Nfa~R~~ 22 (33)
T 2k1p_A 6 DWQCKTCSN-VNWARRSE 22 (33)
T ss_dssp SCBCSSSCC-BCCTTCSB
T ss_pred CcccCCCCC-cccccccc
Confidence 467998875 59998864
No 24
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=21.01 E-value=28 Score=19.17 Aligned_cols=9 Identities=33% Similarity=0.881 Sum_probs=8.0
Q ss_pred CceeecCcC
Q 043467 62 GALTCAACG 70 (90)
Q Consensus 62 ~aL~CaACg 70 (90)
++++|.||.
T Consensus 20 ~~~kC~aCe 28 (34)
T 3gj5_B 20 DSTKCIACE 28 (34)
T ss_dssp SCSBCTTTC
T ss_pred ccCEEcccC
Confidence 789999996
Done!