Query 043467
Match_columns 90
No_of_seqs 109 out of 186
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 08:48:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043467.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043467hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k81a_ g.59.1.1 (A:) Zinc-bin 49.8 2.1 0.00016 23.0 0.5 13 62-74 20-32 (36)
2 d1neea2 g.59.1.1 (A:99-135) Zi 38.3 5.5 0.0004 21.3 1.1 16 60-75 19-34 (37)
3 d1xa6a3 g.49.1.1 (A:209-270) B 34.1 8.8 0.00064 20.9 1.5 31 44-76 15-47 (62)
4 d1ptqa_ g.49.1.1 (A:) Protein 30.0 14 0.001 19.2 1.8 23 46-70 13-35 (50)
5 d1iyma_ g.44.1.1 (A:) EL5 RING 27.6 15 0.0011 19.6 1.8 15 62-78 20-34 (55)
6 d1tbna_ g.49.1.1 (A:) Protein 24.0 21 0.0015 19.5 2.0 30 45-78 20-49 (66)
7 d1ul5a_ g.72.1.1 (A:) Squamosa 23.4 12 0.00089 23.1 0.9 31 47-80 6-56 (86)
8 d1j2oa2 g.39.1.3 (A:31-63) Rho 17.3 17 0.0013 19.2 0.5 9 64-72 1-9 (33)
9 d2gqea1 g.41.11.1 (A:3-31) Nuc 15.8 21 0.0015 17.9 0.6 9 62-70 17-25 (29)
10 d1wj0a_ g.72.1.1 (A:) Squamosa 15.6 23 0.0017 20.3 0.9 11 47-57 6-16 (58)
No 1
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=49.77 E-value=2.1 Score=22.98 Aligned_cols=13 Identities=46% Similarity=0.894 Sum_probs=11.3
Q ss_pred CceeecCcCcccc
Q 043467 62 GALTCAACGCHRN 74 (90)
Q Consensus 62 ~aL~CaACgCHRn 74 (90)
--|+|.|||-.|+
T Consensus 20 ~~l~C~aCGa~r~ 32 (36)
T d1k81a_ 20 HLLKCMACGAIRP 32 (36)
T ss_dssp EEEEEETTTEEEE
T ss_pred EEEEeccCCCCCc
Confidence 6799999998875
No 2
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=38.33 E-value=5.5 Score=21.33 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=12.5
Q ss_pred CCCceeecCcCccccc
Q 043467 60 GTGALTCAACGCHRNF 75 (90)
Q Consensus 60 gt~aL~CaACgCHRnF 75 (90)
...-|+|.|||=.|.-
T Consensus 19 R~~~l~C~aCGa~r~V 34 (37)
T d1neea2 19 RISLLKCEACGAKAPL 34 (37)
T ss_dssp TTTEEECSTTSCCCCS
T ss_pred CEEEEEeccCCCCccc
Confidence 3478999999987753
No 3
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.12 E-value=8.8 Score=20.92 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=20.7
Q ss_pred CccccCccccccCCCCCCCceeecCcC--cccccc
Q 043467 44 GYAVDGCREFMASGENGTGALTCAACG--CHRNFH 76 (90)
Q Consensus 44 g~avDGCgEFm~~g~egt~aL~CaACg--CHRnFH 76 (90)
...=|=|.++|..... .+++|..|+ ||+.=.
T Consensus 15 pt~C~~C~~~i~g~~~--~g~~C~~C~~~~H~~C~ 47 (62)
T d1xa6a3 15 PHWCEYCANFMWGLIA--QGVRCSDCGLNVHKQCS 47 (62)
T ss_dssp CCBCTTTCCBCCTTTT--CEECCSSSCCCBCTGGG
T ss_pred CCCCcccCcccccccc--CeEEcCCCCchhhHHHH
Confidence 3445779999975322 689999886 555433
No 4
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.95 E-value=14 Score=19.24 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=16.6
Q ss_pred cccCccccccCCCCCCCceeecCcC
Q 043467 46 AVDGCREFMASGENGTGALTCAACG 70 (90)
Q Consensus 46 avDGCgEFm~~g~egt~aL~CaACg 70 (90)
.=|=|.++|.... ..+++|..|+
T Consensus 13 ~C~~C~~~i~g~~--~qg~~C~~C~ 35 (50)
T d1ptqa_ 13 FCDHCGSLLWGLV--KQGLKCEDCG 35 (50)
T ss_dssp BCTTTCCBCCSSS--SCEEEETTTC
T ss_pred CCcccCCcccCcc--cCcEECCCCC
Confidence 3466888887532 2689999986
No 5
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=27.62 E-value=15 Score=19.60 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=10.1
Q ss_pred CceeecCcCcccccccc
Q 043467 62 GALTCAACGCHRNFHRR 78 (90)
Q Consensus 62 ~aL~CaACgCHRnFHRr 78 (90)
...+...|| | .||..
T Consensus 20 ~~~~l~~C~-H-~Fh~~ 34 (55)
T d1iyma_ 20 EARFLPRCG-H-GFHAE 34 (55)
T ss_dssp CCEECSSSC-C-EECTT
T ss_pred EEEEeCCCC-C-cccHH
Confidence 455666677 6 79975
No 6
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}
Probab=24.00 E-value=21 Score=19.45 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=20.0
Q ss_pred ccccCccccccCCCCCCCceeecCcCcccccccc
Q 043467 45 YAVDGCREFMASGENGTGALTCAACGCHRNFHRR 78 (90)
Q Consensus 45 ~avDGCgEFm~~g~egt~aL~CaACgCHRnFHRr 78 (90)
..=|=|+++|.... ..+++|..|+ -++|.+
T Consensus 20 ~~C~~C~~~i~g~~--~~g~~C~~C~--~~~H~~ 49 (66)
T d1tbna_ 20 TFCDHCGSLLYGLV--HQGMKCSCCE--MNVHRR 49 (66)
T ss_dssp CBCSSSCCBCCTTS--SSCEEETTTC--CEECTT
T ss_pred cCCcCCCCcccCcc--cCccccCccc--CeEChH
Confidence 34577999997532 2689999664 455654
No 7
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.41 E-value=12 Score=23.14 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=20.7
Q ss_pred ccCccccccCCC--------------------CCCCceeecCcCcccccccccc
Q 043467 47 VDGCREFMASGE--------------------NGTGALTCAACGCHRNFHRREE 80 (90)
Q Consensus 47 vDGCgEFm~~g~--------------------egt~aL~CaACgCHRnFHRre~ 80 (90)
||||+.-+.+.. +|....-|-.|+ .||--..
T Consensus 6 V~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~---rFH~L~e 56 (86)
T d1ul5a_ 6 VPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCG---KFHLLPD 56 (86)
T ss_dssp ETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTS---SEEEGGG
T ss_pred eCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhc---cccChhh
Confidence 778877776642 355667788885 6886543
No 8
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.34 E-value=17 Score=19.17 Aligned_cols=9 Identities=56% Similarity=1.689 Sum_probs=7.5
Q ss_pred eeecCcCcc
Q 043467 64 LTCAACGCH 72 (90)
Q Consensus 64 L~CaACgCH 72 (90)
|+|..|+|-
T Consensus 1 LkC~cC~cR 9 (33)
T d1j2oa2 1 LSCDLCGCR 9 (33)
T ss_dssp CCCSSSCSC
T ss_pred Ccccccccc
Confidence 689999994
No 9
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.76 E-value=21 Score=17.93 Aligned_cols=9 Identities=44% Similarity=1.080 Sum_probs=7.8
Q ss_pred CceeecCcC
Q 043467 62 GALTCAACG 70 (90)
Q Consensus 62 ~aL~CaACg 70 (90)
++.+|.||.
T Consensus 17 ~~~~CvAC~ 25 (29)
T d2gqea1 17 EAIKCVACE 25 (29)
T ss_dssp TCSBCSSSC
T ss_pred hCCEEeecC
Confidence 688999996
No 10
>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.56 E-value=23 Score=20.31 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=7.6
Q ss_pred ccCccccccCC
Q 043467 47 VDGCREFMASG 57 (90)
Q Consensus 47 vDGCgEFm~~g 57 (90)
||||+.-+.+.
T Consensus 6 V~gC~~dl~~~ 16 (58)
T d1wj0a_ 6 VDNCGADLSKV 16 (58)
T ss_dssp STTCCCEETSC
T ss_pred eCCcchhhhhh
Confidence 67777777654
Done!