BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043468
(720 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 136/357 (38%), Gaps = 59/357 (16%)
Query: 406 YDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGL-VMIFPVQKSGNKTLLFLK 464
++ +V +L + + I R + DF+ P+ G+ +MI QKS FL
Sbjct: 451 WNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLD 510
Query: 465 PFTRAVWILVAVISIYNGFVVWLIERN-----HWPEL-------TGSALHQTGTF--FWL 510
P +W+ + I V++L+ R H E + + ++ G F W
Sbjct: 511 PLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWF 570
Query: 511 S---FNLHGEKL--HSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETL 565
S F G + S R+ VW F L+I +YTANL + LT + + + E L
Sbjct: 571 SLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDL 630
Query: 566 QSSNAIIGYSRCLGDYASDLKSRKTGAVF------LEVAEAKIFLAKYCKGFTVAGP--- 616
S I Y + R AVF + AE +F+ +G
Sbjct: 631 -SKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKG 689
Query: 617 ---------------------TYKVG------GLGFAFPKGSPLLPSVIEALLKVSESGK 649
T KVG G G A PKGS L V A+LK+SE G
Sbjct: 690 KYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGL 749
Query: 650 LRELETSMIASE-KCMEVNLHDDDDISSLSPSGF-WVLFVLSGGISTIALVIFLWRC 704
L +L+ + +C + + S+LS S V ++L GG+ LV + C
Sbjct: 750 LDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFC 806
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 123/287 (42%), Gaps = 37/287 (12%)
Query: 21 TSSVAEIASKKQIPVLSFADATPNWA-TERWPFLLQASQNQLAQMKAIAAIVQSWEWHQV 79
TS +AE + LSFA TP A +++P+ + + A AI +++ ++W +V
Sbjct: 98 TSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRV 157
Query: 80 TVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVV 139
+ +D+ + + L+ L EI + + P + ++KLKG R+ +
Sbjct: 158 GTLTQDVQRFSE-VRNDLTGVLYGEDIEISDTESFSNDPCT----SVKKLKGNDVRIILG 212
Query: 140 HLSLELAVHLFEKANKMKMMEKDYIWITTDAFT----SLVHSINTSS-------ISSMQG 188
+A +F A + M Y WI + VH+ SS +++M+G
Sbjct: 213 QFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEG 272
Query: 189 ILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSVALAMEQK 248
+GV P + + + +++ EY + + P YD +W +A +++
Sbjct: 273 YIGVDFE-PLSSKQIKTISGKTPQQYEREYNNKRSGVGPSKFHGYAYDGIWVIAKTLQRA 331
Query: 249 SEKL-----NQKL---------LRRILL-----SDFDGLTGKVEFMN 276
E L +Q++ L RI+L ++F G+TG+V F N
Sbjct: 332 METLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRN 378
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 46/330 (13%)
Query: 9 VEAILGPQTSEETSSVAEIASKKQIPVLS------FADATPNWATERWPFLLQASQNQLA 62
V AI GP S ++V I + +P + +D ++ +P S
Sbjct: 72 VAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLS----- 126
Query: 63 QMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRL 122
+AI +VQ ++W VTV+Y+D +TG++ L + ++ A + L + P+
Sbjct: 127 --RAILDLVQFFKWKTVTVVYDD----STGLI-RLQELIK-APSRYNLRLKIRQLPADTK 178
Query: 123 SEE--LEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEK--DYIWITTDAFTSLVHSI 178
+ L+++K G+ + S E+A + ++A M MM + YI+ T D F V
Sbjct: 179 DAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALNMSMMTEYYHYIFTTLDLFALDVEPY 238
Query: 179 NTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGAL---AVQTY 235
S ++ + G R E+ K +R A P+ D+ G + A Y
Sbjct: 239 RYSGVN----MTGFRILNTENTQVSSIIEKWSMERLQAP-PKPDSGLLDGFMTTDAALMY 293
Query: 236 DAVWSVALAMEQ--------------KSEKLNQKLLRRILLSDFDGLTGKVEF-MNQKVA 280
DAV V++A++Q K + + + I + ++GLTG++ F +
Sbjct: 294 DAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLR 353
Query: 281 PAHTYQIINLMGKSYRELGFWTYGLGFSDT 310
+I+L + ++G W G + T
Sbjct: 354 TDFDLDVISLKEEGLEKIGTWDPASGLNMT 383
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 138/330 (41%), Gaps = 46/330 (13%)
Query: 9 VEAILGPQTSEETSSVAEIASKKQIPVLS------FADATPNWATERWPFLLQASQNQLA 62
V AI GP S ++V I + +P + +D ++ +P S
Sbjct: 72 VAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLS----- 126
Query: 63 QMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRL 122
+AI +VQ ++W VTV+Y+D +TG++ L + ++ A + L + P+
Sbjct: 127 --RAILDLVQFFKWKTVTVVYDD----STGLI-RLQELIK-APSRYNLRLKIRQLPADTK 178
Query: 123 SEE--LEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEK--DYIWITTDAFTSLVHSI 178
+ L+++K G+ + S E+A + ++A M MM + YI+ T D F V
Sbjct: 179 DAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPY 238
Query: 179 NTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGAL---AVQTY 235
S ++ + G R E+ K +R A P+ D+ G + A Y
Sbjct: 239 RYSGVN----MTGFRILNTENTQVSSIIEKWSMERLQAP-PKPDSGLLDGFMTTDAALMY 293
Query: 236 DAVWSVALAMEQ--------------KSEKLNQKLLRRILLSDFDGLTGKVEF-MNQKVA 280
DAV V++A++Q K + + + I + ++GLTG++ F +
Sbjct: 294 DAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLR 353
Query: 281 PAHTYQIINLMGKSYRELGFWTYGLGFSDT 310
+I+L + ++G W G + T
Sbjct: 354 TDFDLDVISLKEEGLEKIGTWDPASGLNMT 383
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 135/355 (38%), Gaps = 62/355 (17%)
Query: 7 QKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATE-RWPFLLQASQNQLAQMK 65
+KV ++G S + VA I QIP +S+A P + + R+ F + Q +
Sbjct: 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQ 175
Query: 66 AIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPH------FPS 119
A+ IV++ W+ V+ + + G+ + G I + +P
Sbjct: 176 AMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDF 235
Query: 120 SRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSIN 179
R+ ++L L R V+ + E + A + + ++W+ +D++ S ++ ++
Sbjct: 236 DRIIKQL--LDTPNSRAVVIFANDEDIKQILAAAKRADQVGH-FLWVGSDSWGSKINPLH 292
Query: 180 TSSISSMQGIL---------GVRSHFP----EDKPK---FQDF------CK--------- 208
+ I G ++F E+ + F ++ CK
Sbjct: 293 QHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKE 352
Query: 209 -RFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSVALAMEQKSEKL--------------- 252
RK G E +D+N+E DAV+++A A+ ++ L
Sbjct: 353 DTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAG 412
Query: 253 NQKLLRRILLSDFDGLTGK-VEFMNQKVAPAH----TYQIINLMGKSYRELGFWT 302
+KLL+ I +F+G G V F AP YQ N YR +G WT
Sbjct: 413 GKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWT 467
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 135/355 (38%), Gaps = 62/355 (17%)
Query: 7 QKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATE-RWPFLLQASQNQLAQMK 65
+KV ++G S + VA I QIP +S+A P + + R+ F + Q +
Sbjct: 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQ 175
Query: 66 AIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPH------FPS 119
A+ IV++ W+ V+ + + G+ + G I + +P
Sbjct: 176 AMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLCIAQSVRIPQERKDRTIDF 235
Query: 120 SRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSIN 179
R+ ++L L R V+ + E + A + + ++W+ +D++ S ++ ++
Sbjct: 236 DRIIKQL--LDTPNSRAVVIFANDEDIKQILAAAKRADQVGH-FLWVGSDSWGSKINPLH 292
Query: 180 TSSISSMQGIL---------GVRSHFP----EDKPK---FQDF------CK--------- 208
+ I G ++F E+ + F ++ CK
Sbjct: 293 QHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKE 352
Query: 209 -RFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSVALAMEQKSEKL--------------- 252
RK G E +D+N+E DAV+++A A+ ++ L
Sbjct: 353 DTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAG 412
Query: 253 NQKLLRRILLSDFDGLTGK-VEFMNQKVAPAH----TYQIINLMGKSYRELGFWT 302
+KLL+ I +F+G G V F AP YQ N YR +G WT
Sbjct: 413 GKKLLKYIRHVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTTNPGYRLIGQWT 467
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic
Dimer At 1.4 Angstrom Resolution
pdb|3OM1|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3OM1|B Chain B, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3QLU|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLV|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|E Chain E, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|G Chain G, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|I Chain I, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 393
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 133/313 (42%), Gaps = 34/313 (10%)
Query: 23 SVAEIASKKQIPVLSFA-DATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTV 81
+V+ I +K+IP + + TP R+ + N+ + A++ I++S+ + ++
Sbjct: 86 TVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYPSNEDVSL-AVSRILKSFNYPSASL 144
Query: 82 IYEDIDSSATGILPHLSDALRE--AGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVV 139
I + L L + +R E + V L S + L++++ + ++
Sbjct: 145 I-----CAKAECLLRLEELVRGFLISKETLSVRMLDD--SRDPTPLLKEIRDDKVSTIII 197
Query: 140 HLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPED 199
+ ++ + KA+++ M Y +I T ++H SS ILG S F
Sbjct: 198 DANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLDGIVEDSS--NILGF-SMFNTS 254
Query: 200 KPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSVALAMEQ--KSEKLNQK-- 255
P + +F + + E E P A +DAV V A+ + +S+++ K
Sbjct: 255 HPFYPEFVRSLNMSW-RENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQEIGVKPL 313
Query: 256 -------------LLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFW- 301
L+ + + ++DGLTG+VEF ++ +T +I+ + +RE+G W
Sbjct: 314 ACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWY 373
Query: 302 -TYGLGFSDTIID 313
L + T +D
Sbjct: 374 SNRTLAMNATTLD 386
>pdb|4GNR|A Chain A, 1.0 Angstrom Resolution Crystal Structure Of The
Branched-Chain Amino Acid Transporter Substrate Binding
Protein Livj From Streptococcus Pneumoniae Str. Canada
Mdr_19a In Complex With Isoleucine
Length = 353
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 114/278 (41%), Gaps = 26/278 (9%)
Query: 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQL 61
+L+ KV A++GP TS T++ A+K +P++S AT + T+ +L +
Sbjct: 69 NLVTQSKVSAVVGPATSGATAAAVANATKAGVPLIS-PSATQDGLTKGQDYLFIGTFQDS 127
Query: 62 AQMKAIAAIVQSWEWHQVTVIYEDIDSS-ATGILPHLSDALR-EAGAEIIHVLALPHFPS 119
Q K I+ V + V+Y D S A GI ++ + E A+ V F +
Sbjct: 128 FQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQA 187
Query: 120 SRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTS--LVHS 177
+ L K+KG VV A + +A M + D + D F V
Sbjct: 188 A-----LTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGI---DKPIVGGDGFNGEEFVQQ 239
Query: 178 INTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDA 237
S++ I G + E K + F +R ++ N EP A YD+
Sbjct: 240 ATAEKASNIYFISGFSTTV-EVSAKAKAFLDAYRAKY---------NEEPSTFAALAYDS 289
Query: 238 VWSVALAMEQKSEKLNQKLLRRILLS-DFDGLTGKVEF 274
V VA A K K + ++ + + DF+G+TG+ F
Sbjct: 290 VHLVANAA--KGAKNSGEIKDNLAXTKDFEGVTGQTSF 325
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 130/331 (39%), Gaps = 48/331 (14%)
Query: 9 VEAILGPQTSEETSSVAEIASKKQIPVLSFA------DATPNWATERWPFLLQASQNQLA 62
V AI GP T++V I + ++P + D + +P S
Sbjct: 75 VVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNKDTFYVNLYPDYASLSH---- 130
Query: 63 QMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEI-IHVLALPHFPSSR 121
AI +VQS +W TV+Y+D +TG++ + + I + + LP S
Sbjct: 131 ---AILDLVQSLKWRSATVVYDD----STGLIRLQELIMAPSRYNIRLKIRQLP-IDSDD 182
Query: 122 LSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDY--IWITTDAFTSLVHSIN 179
L+++K G+ + S +A + ++A M MM + Y I+ T D + +
Sbjct: 183 SRPLLKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMMTEYYHFIFTTLDLYALDLEPYR 242
Query: 180 TSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGAL---AVQTYD 236
S ++ + G R D P +++ P ++ G + A YD
Sbjct: 243 YSGVN----LTGFRI-LNVDNPHVSAIVEKWSMERLQAAPRAESGLLDGVMMTDAALLYD 297
Query: 237 AVWSVALAMEQ--------------KSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPA 282
AV V++ ++ K+ + + + I + ++GLTG++ F K +
Sbjct: 298 AVHIVSVCYQRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVF--NKTSGL 355
Query: 283 HT---YQIINLMGKSYRELGFWTYGLGFSDT 310
T II+L ++G W+ G + T
Sbjct: 356 RTDFDLDIISLKEDGLEKVGVWSPADGLNIT 386
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 5/165 (3%)
Query: 9 VEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATE-RWPFLLQASQNQLAQMKAI 67
+ ++G S + VA + QIP +S+A + + + R+ + + Q KA+
Sbjct: 118 IAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAM 177
Query: 68 AAIVQSWEWHQVTVIYEDIDSSATGILPHLSDA-LREAGAEIIHVLALPHFPSSRLSEEL 126
A I++ + W V+ + + D TGI +A LR + + S S
Sbjct: 178 AEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIR 237
Query: 127 EKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAF 171
E L+ RV V+ + + + L AN++ + W+ +D +
Sbjct: 238 ELLQKPNARVVVLFMRSDDSRELIAAANRVNA---SFTWVASDGW 279
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 5/164 (3%)
Query: 9 VEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATE-RWPFLLQASQNQLAQMKAI 67
+ ++G S + VA + QIP +S+A + + + R+ + + Q KA+
Sbjct: 117 IAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAM 176
Query: 68 AAIVQSWEWHQVTVIYEDIDSSATGILPHLSDA-LREAGAEIIHVLALPHFPSSRLSEEL 126
A I++ + W V+ + + D TGI +A LR + + S S
Sbjct: 177 AEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIR 236
Query: 127 EKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDA 170
E L+ RV V+ + + + L A++ + W+ +D
Sbjct: 237 ELLQKPNARVVVLFMRSDDSRELIAAASRANA---SFTWVASDG 277
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 33/126 (26%)
Query: 236 DAVWSVALAMEQKSEKLN-----------------QKLLRRILLSD--FDGLTGKVEFMN 276
DAV VA A+ + EK N L +R+L+S DG+TG+VEF
Sbjct: 263 DAVGVVAQAVHELLEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYADGVTGRVEFNE 322
Query: 277 QKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYT 336
Y I+NL + ++G ++ T + P ++ WPG
Sbjct: 323 DGDRKFANYSIMNLQNRKLVQVGI------YNGTHVIPNDR--------KIIWPGGETEK 368
Query: 337 PKGWTL 342
P+G+ +
Sbjct: 369 PRGYQV 374
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 378 GFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADF 437
GF I++ A+ +++ + N S+D L+ L F V+ + + +R Q F
Sbjct: 30 GFDIDVANAVCKEMQAECSFT----NQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSF 85
Query: 438 THPYTESGLVMIFPVQKSGNKTLLFLK 464
+ PY E GL + +K T LK
Sbjct: 86 SQPYYE-GLSAVVVTRKGAYHTFADLK 111
>pdb|3IBV|A Chain A, Karyopherin Cytosolic State
pdb|3IBV|B Chain B, Karyopherin Cytosolic State
pdb|3ICQ|T Chain T, Karyopherin Nuclear State
pdb|3ICQ|U Chain U, Karyopherin Nuclear State
Length = 980
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 84 EDIDSSATGILPHLSD---ALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVH 140
+D D ++T + P LSD +LR+ + +L F S L ++K+K + + +
Sbjct: 343 DDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDD 402
Query: 141 LSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISS 185
E E K+K+ + I + F+S ++S TSS+S+
Sbjct: 403 PDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLST 447
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 585 LKSRKTGAVFLEVAEAKIFLAKY-----CKGFTV-AGPTYKVGGLGFAFPKGSPLLPSVI 638
L S KTG + + +A + K CK T+ +G + G G A KGSP +
Sbjct: 199 LVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQID 258
Query: 639 EALLKVSESGKLRELET 655
ALL+ G++ ELET
Sbjct: 259 LALLQFVGDGEMEELET 275
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 265 FDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWT 302
F+GLTG V+F + +T +I + R++G+W
Sbjct: 332 FEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWN 369
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L V A+LK+SE+G L +L+
Sbjct: 204 TMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLK 247
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L V A+LK+SE+G L +L+
Sbjct: 204 TMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLK 247
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 369 ELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIV 428
E + + GF ++L+ A+ ++L L Y P + + ++ L N + + I
Sbjct: 17 EFKQGDLYVGFDVDLWAAIAKELK--LDYELKPMD--FSGIIPALQTKNVDLALAGITIT 72
Query: 429 ARRCQYADFTHPYTESGLVMIFPVQKSGNKTL 460
R + DF+ Y +SGL+++ + K++
Sbjct: 73 DERKKAIDFSDGYYKSGLLVMVKANNNDVKSV 104
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 378 GFSIELFKALVEKLPF----YLPYNFI---PFNGSYDDLVKQLYLNNFAGVVGDVAIVAR 430
GF I++ K L + F YL N +G ++ ++ +++ +G + I
Sbjct: 61 GFCIDILKRLAHTIGFSYDLYLVTNGKHGKKIDGVWNGMIGEVFYQRADMAIGSLTINEE 120
Query: 431 RCQYADFTHPYTESGL-VMI 449
R + DF+ P+ E+G+ VM+
Sbjct: 121 RSEIVDFSVPFVETGISVMV 140
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L V A+LK+SE+G L +L+
Sbjct: 206 TMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLK 249
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 592 AVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLR 651
A +E + + C T G G G PKGSP + A+L++ E GKL
Sbjct: 187 AFLMESTTIEFVTQRNCN-LTQIGGLIDSKGYGVGTPKGSPYRDKITIAILQLQEEGKLH 245
Query: 652 ELETSMIASEKCME 665
++ C E
Sbjct: 246 MMKEKWWRGNGCPE 259
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L V A+LK+SE G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLK 251
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L V A+LK+SE G L +L+
Sbjct: 207 TMKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLK 250
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK+SE G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLK 251
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK+SE G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLK 251
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK+SE G L +L+
Sbjct: 205 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLK 248
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK+SE G L +L+
Sbjct: 237 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLK 280
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 256 LLRRILLSDF--DGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTIID 313
L +R+L+S DG+TG++EF Y I+NL + ++G F+ + I
Sbjct: 319 LFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQVGI------FNGSYI- 371
Query: 314 PKYNCSSMKDLGQVFWPGA 332
+++ ++ WPG
Sbjct: 372 -------IQNDRKIIWPGG 383
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L V A+LK+SE G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLK 251
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L V A+LK+SE G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLK 251
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 403 NGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMI 449
N +D L+ L L F + G I R + DFT PY + + I
Sbjct: 47 NQPWDSLIPSLKLGKFDALFGGXNITTARQKEVDFTDPYYTNSVSFI 93
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 592 AVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLR 651
A +E + + C T G G G P GSP + A+LK+ E GKL
Sbjct: 187 AFLMESTTIEFVTQRNCN-LTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLH 245
Query: 652 ELETSMIASEKCME 665
++ C E
Sbjct: 246 MMKEKWWRGNGCPE 259
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 592 AVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLR 651
A +E + + C T G G G P GSP + A+LK+ E GKL
Sbjct: 187 AFLMESTTIEFVTQRNCN-LTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLH 245
Query: 652 ELETSMIASEKCME 665
++ C E
Sbjct: 246 MMKEKWWRGNGCPE 259
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLK 251
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 585 LKSRKTGAVFLEVAEAKIFLAKYCKG-FTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLK 643
L++ + A + F+ KG VAG G FPKGSPL+ V L +
Sbjct: 167 LEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELAR 226
Query: 644 VSESGKLRELETSMIASE 661
+ G+ ++ SE
Sbjct: 227 MKADGRYAKIYKKWFGSE 244
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 592 AVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLR 651
A +E + + C T G G G P GSP + A+LK+ E GKL
Sbjct: 187 AFLMESTTIEFVTQRNCN-LTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLH 245
Query: 652 ELETSMIASEKCME 665
++ C E
Sbjct: 246 MMKEKWWRGNGCPE 259
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 592 AVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLR 651
A +E + + C T G G G P GSP + A+LK+ E GKL
Sbjct: 187 AFLMESTTIEFVTQRNCN-LTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLH 245
Query: 652 ELETSMIASEKCME 665
++ C E
Sbjct: 246 MMKEKWWRGNGCPE 259
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 606 KYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
K C V G G G A PKGS L +V A+LK++E G L +L+
Sbjct: 202 KPCDTMKVGG-NLDCKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 249
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 592 AVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLR 651
A +E + + C T G G G P GSP + A+LK+ E GKL
Sbjct: 187 AFLMESTTIEFVTQRNCN-LTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLH 245
Query: 652 ELETSMIASEKCME 665
++ C E
Sbjct: 246 MMKEKWWRGNGCPE 259
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L V A+LK+SE G L +L+
Sbjct: 224 TMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLK 267
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVG------GLGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVG G G A PKGS L +V A+LK++E G L +L+
Sbjct: 206 TMKVGCNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 249
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L V A+LK+SE G L +L+
Sbjct: 205 TMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLK 248
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 205 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 248
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 251
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 251
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 221 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 264
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 251
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L V A+LK+SE G L +L+
Sbjct: 205 TMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLK 248
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 251
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 251
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 251
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 251
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 207 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 250
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 251
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 370 LRNFTYFGGFSIELFKALVEKLPF---YLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVA 426
L N GFSI+L++++ ++ + Y+ +P +L+ + N + ++
Sbjct: 17 LSNKGELSGFSIDLWRSIATQIGIESKLIEYSSVP------ELISAIKDNKVNLGIAAIS 70
Query: 427 IVARRCQYADFTHPYTESGLVMIFPVQKSG 456
I A R Q DF+ P SGL ++ +SG
Sbjct: 71 ITAEREQNFDFSLPIFASGLQIMVRNLESG 100
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 251
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 206 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 249
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 251
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 205 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 248
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 224 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 267
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 205 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 248
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 209 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 252
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 251
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 224 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLK 267
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK+ E G L +L+
Sbjct: 208 TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLDEQGLLDKLK 251
>pdb|3FLO|A Chain A, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|C Chain C, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|E Chain E, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|G Chain G, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
Length = 460
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 434 YADFTHPYTESGLVMIFPVQKSGNKTL--LFLKPFT 467
+ D THP SG + FP K+ KTL LFLK FT
Sbjct: 190 FIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFT 225
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 205 TMKVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLK 248
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 617 TYKVGG------LGFAFPKGSPLLPSVIEALLKVSESGKLRELE 654
T KVGG G A PKGS L +V A+LK++E G L +L+
Sbjct: 205 TMKVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLK 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,438,939
Number of Sequences: 62578
Number of extensions: 905738
Number of successful extensions: 2055
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1979
Number of HSP's gapped (non-prelim): 97
length of query: 720
length of database: 14,973,337
effective HSP length: 106
effective length of query: 614
effective length of database: 8,340,069
effective search space: 5120802366
effective search space used: 5120802366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)