Query 043468
Match_columns 720
No_of_seqs 297 out of 3340
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 08:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 1.5E-85 5.1E-90 767.6 52.9 669 3-717 56-818 (823)
2 4f11_A Gamma-aminobutyric acid 100.0 1.3E-36 4.3E-41 327.3 26.7 304 2-333 78-421 (433)
3 3o21_A Glutamate receptor 3; p 100.0 3.7E-36 1.3E-40 317.7 27.7 296 2-311 64-381 (389)
4 3hsy_A Glutamate receptor 2; l 100.0 2.2E-36 7.5E-41 318.5 25.9 293 2-309 55-373 (376)
5 3saj_A Glutamate receptor 1; r 100.0 1.5E-35 5.1E-40 313.2 23.6 293 2-309 62-376 (384)
6 1jdp_A NPR-C, atrial natriuret 100.0 1.4E-34 4.8E-39 312.1 30.4 293 6-306 82-397 (441)
7 3h6g_A Glutamate receptor, ion 100.0 2.8E-35 9.5E-40 312.8 24.2 298 2-310 66-383 (395)
8 3om0_A Glutamate receptor, ion 100.0 4.7E-35 1.6E-39 310.7 24.6 297 2-310 65-381 (393)
9 1dp4_A Atrial natriuretic pept 100.0 4.1E-35 1.4E-39 315.9 23.7 317 2-339 71-419 (435)
10 4gpa_A Glutamate receptor 4; P 100.0 3.5E-34 1.2E-38 304.1 28.1 290 6-310 67-378 (389)
11 2e4u_A Metabotropic glutamate 100.0 1.1E-33 3.8E-38 312.8 30.9 314 6-343 115-487 (555)
12 3qek_A NMDA glutamate receptor 100.0 4.1E-33 1.4E-37 294.7 25.9 264 2-303 60-369 (384)
13 3sm9_A Mglur3, metabotropic gl 100.0 8.5E-33 2.9E-37 299.0 26.5 289 7-302 115-462 (479)
14 3ks9_A Mglur1, metabotropic gl 100.0 7.7E-32 2.6E-36 292.8 28.8 294 5-303 125-475 (496)
15 3td9_A Branched chain amino ac 100.0 1.3E-31 4.3E-36 281.7 23.8 285 2-305 75-364 (366)
16 4f06_A Extracellular ligand-bi 100.0 1.6E-31 5.4E-36 280.9 21.5 283 1-295 65-352 (371)
17 3i09_A Periplasmic branched-ch 100.0 2.7E-31 9.2E-36 280.2 23.0 277 1-293 64-341 (375)
18 3i45_A Twin-arginine transloca 100.0 1.6E-31 5.4E-36 283.1 20.8 293 2-308 67-364 (387)
19 3ipc_A ABC transporter, substr 100.0 2.1E-31 7.2E-36 278.9 19.3 285 2-304 64-352 (356)
20 3n0w_A ABC branched chain amin 100.0 4.2E-31 1.4E-35 279.0 21.1 277 2-293 67-345 (379)
21 3mq4_A Mglur7, metabotropic gl 100.0 1.3E-31 4.4E-36 290.7 16.8 291 7-302 116-467 (481)
22 4evq_A Putative ABC transporte 100.0 4E-30 1.4E-34 271.3 26.7 286 1-304 75-364 (375)
23 3h5l_A Putative branched-chain 100.0 5.6E-31 1.9E-35 282.0 20.2 286 1-303 76-396 (419)
24 3qel_B Glutamate [NMDA] recept 100.0 8.2E-31 2.8E-35 272.9 20.5 261 3-303 58-351 (364)
25 3hut_A Putative branched-chain 100.0 1.2E-30 4.1E-35 273.4 21.7 286 2-304 66-354 (358)
26 4eyg_A Twin-arginine transloca 100.0 2.4E-30 8.2E-35 272.3 21.7 284 2-300 66-354 (368)
27 1usg_A Leucine-specific bindin 100.0 4.6E-30 1.6E-34 267.7 20.1 280 2-298 64-345 (346)
28 3lkb_A Probable branched-chain 100.0 2.3E-30 7.8E-35 274.8 17.3 292 2-310 69-381 (392)
29 4gnr_A ABC transporter substra 100.0 1.8E-28 6.1E-33 256.2 24.1 280 1-302 68-352 (353)
30 3eaf_A ABC transporter, substr 100.0 1.2E-28 4.2E-33 261.2 22.3 284 2-305 70-373 (391)
31 3lop_A Substrate binding perip 100.0 9E-29 3.1E-33 259.7 20.1 280 2-297 67-355 (364)
32 3n0x_A Possible substrate bind 100.0 1.6E-28 5.6E-33 258.4 19.3 284 1-303 66-360 (374)
33 3snr_A Extracellular ligand-bi 100.0 7.3E-28 2.5E-32 252.7 23.5 280 2-298 63-361 (362)
34 3sg0_A Extracellular ligand-bi 100.0 1.4E-28 4.8E-33 260.6 18.1 282 2-298 83-385 (386)
35 1pea_A Amidase operon; gene re 99.9 7.9E-27 2.7E-31 246.7 20.6 285 2-301 69-357 (385)
36 1yae_A Glutamate receptor, ion 99.9 2.3E-25 7.7E-30 228.1 14.4 249 344-679 10-304 (312)
37 3g3k_A Glutamate receptor, ion 99.9 3.8E-24 1.3E-28 212.9 15.6 242 346-664 3-258 (259)
38 1pb7_A N-methyl-D-aspartate re 99.9 5.3E-24 1.8E-28 215.3 12.8 237 346-664 40-291 (292)
39 2rc8_A Glutamate [NMDA] recept 99.9 7E-24 2.4E-28 214.8 12.8 210 375-665 67-294 (294)
40 4gvo_A LMO2349 protein; struct 99.9 1.4E-23 4.7E-28 206.5 12.6 226 344-660 6-236 (243)
41 2a5s_A N-methyl-D-aspartate re 99.9 4.1E-23 1.4E-27 208.0 12.8 245 344-664 26-283 (284)
42 3ckm_A YRAM (HI1655), LPOA; pe 99.9 8.4E-23 2.9E-27 210.2 14.6 267 2-300 52-321 (327)
43 2h4a_A YRAM (HI1655); perplasm 99.9 8.8E-23 3E-27 207.4 14.3 264 2-298 51-317 (325)
44 4h5g_A Amino acid ABC superfam 99.9 6.5E-23 2.2E-27 201.7 12.9 226 346-661 11-239 (243)
45 2v3u_A Glutamate receptor delt 99.9 1.1E-21 3.6E-26 195.9 15.8 246 346-664 2-264 (265)
46 3k4u_A Binding component of AB 99.9 2.9E-21 9.8E-26 190.3 14.1 224 345-663 3-232 (245)
47 4f3p_A Glutamine-binding perip 99.8 8.4E-21 2.9E-25 187.4 16.3 222 344-661 21-244 (249)
48 3kzg_A Arginine 3RD transport 99.8 4E-21 1.4E-25 188.2 13.1 220 347-661 3-232 (237)
49 1mqi_A Glutamate receptor 2; G 99.8 8E-21 2.8E-25 189.3 14.5 242 346-664 3-262 (263)
50 3i6v_A Periplasmic His/Glu/Gln 99.8 6.4E-21 2.2E-25 186.0 13.5 219 345-665 3-223 (232)
51 3kbr_A Cyclohexadienyl dehydra 99.8 1.2E-20 4.3E-25 184.9 13.2 202 345-660 13-238 (239)
52 3hv1_A Polar amino acid ABC up 99.8 2.5E-20 8.7E-25 186.2 14.1 231 344-662 18-251 (268)
53 1ii5_A SLR1257 protein; membra 99.8 1.1E-19 3.8E-24 177.2 17.7 219 346-661 3-228 (233)
54 3del_B Arginine binding protei 99.8 5E-20 1.7E-24 181.0 13.0 223 345-665 9-238 (242)
55 3tql_A Arginine-binding protei 99.8 1.5E-19 5.2E-24 175.4 16.2 218 347-658 2-227 (227)
56 4eq9_A ABC transporter substra 99.8 9.6E-20 3.3E-24 179.4 14.5 229 345-664 6-240 (246)
57 3h7m_A Sensor protein; histidi 99.8 1.1E-19 3.9E-24 177.3 14.6 221 344-660 8-231 (234)
58 3mpk_A Virulence sensor protei 99.8 2.3E-19 7.8E-24 179.0 13.6 221 344-660 29-253 (267)
59 1wdn_A GLNBP, glutamine bindin 99.8 5.7E-19 1.9E-23 171.3 14.9 218 347-660 3-223 (226)
60 1lst_A Lysine, arginine, ornit 99.8 3E-19 1E-23 174.9 13.1 223 346-661 3-234 (239)
61 2y7i_A STM4351; arginine-bindi 99.8 6.5E-19 2.2E-23 171.3 14.7 218 345-659 4-228 (229)
62 4dz1_A DALS D-alanine transpor 99.8 8.3E-19 2.8E-23 174.1 15.6 227 345-661 27-255 (259)
63 2iee_A ORF2, probable ABC tran 99.8 2.4E-19 8.4E-24 179.3 11.8 221 344-659 18-246 (271)
64 2pyy_A Ionotropic glutamate re 99.8 6.9E-19 2.3E-23 170.9 13.8 220 347-661 3-224 (228)
65 2q88_A EHUB, putative ABC tran 99.8 2.9E-18 1E-22 170.0 12.0 220 345-659 11-240 (257)
66 2pvu_A ARTJ; basic amino acid 99.7 1.7E-17 5.9E-22 165.9 16.6 223 344-661 39-264 (272)
67 2yln_A Putative ABC transporte 99.7 5.5E-18 1.9E-22 170.4 12.5 219 346-661 56-279 (283)
68 4i62_A Amino acid ABC transpor 99.7 1.2E-17 4.2E-22 166.6 14.3 222 346-660 38-265 (269)
69 2vha_A Periplasmic binding tra 99.7 9.9E-18 3.4E-22 169.1 12.7 226 345-661 15-250 (287)
70 3qax_A Probable ABC transporte 99.7 1.3E-17 4.6E-22 166.3 13.4 219 345-661 29-255 (268)
71 1xt8_A Putative amino-acid tra 99.7 1.5E-17 5E-22 168.3 13.5 219 346-660 43-266 (292)
72 2yjp_A Putative ABC transporte 99.7 1.9E-17 6.6E-22 167.2 13.1 219 346-660 54-277 (291)
73 2v25_A Major cell-binding fact 99.6 1.6E-15 5.5E-20 150.2 9.1 215 346-658 37-258 (259)
74 3n5l_A Binding protein compone 98.7 8.6E-08 3E-12 96.6 11.5 86 574-659 153-243 (310)
75 3p7i_A PHND, subunit of alkylp 98.6 2.1E-07 7.2E-12 94.0 11.7 86 574-659 162-252 (321)
76 2ozz_A Hypothetical protein YH 98.5 1.1E-07 3.7E-12 89.0 5.8 74 375-454 29-108 (231)
77 2h3h_A Sugar ABC transporter, 97.3 0.0011 3.9E-08 66.5 11.0 157 6-170 55-217 (313)
78 3uif_A Sulfonate ABC transport 97.2 0.00078 2.7E-08 68.9 9.1 72 383-455 35-110 (348)
79 3ksx_A Nitrate transport prote 97.2 0.0019 6.4E-08 65.3 11.4 67 386-455 50-122 (324)
80 3un6_A Hypothetical protein sa 97.1 0.00043 1.5E-08 70.6 6.2 84 577-660 190-284 (341)
81 2rjo_A Twin-arginine transloca 97.1 0.0027 9.2E-08 64.3 11.8 152 6-159 59-222 (332)
82 2x26_A Periplasmic aliphatic s 97.1 0.0022 7.7E-08 64.1 11.0 66 386-454 24-95 (308)
83 2h0a_A TTHA0807, transcription 97.0 0.0051 1.8E-07 60.3 11.8 154 6-169 53-216 (276)
84 3o74_A Fructose transport syst 96.9 0.0039 1.3E-07 60.9 10.6 157 6-170 56-216 (272)
85 3brs_A Periplasmic binding pro 96.8 0.0045 1.5E-07 61.2 10.2 157 6-170 63-225 (289)
86 2f5x_A BUGD; periplasmic bindi 96.8 0.011 3.6E-07 58.8 12.7 81 575-657 171-275 (312)
87 3rot_A ABC sugar transporter, 96.8 0.0037 1.3E-07 62.2 9.3 149 6-159 59-213 (297)
88 1tjy_A Sugar transport protein 96.8 0.011 3.8E-07 59.3 12.6 158 3-169 56-222 (316)
89 3c3k_A Alanine racemase; struc 96.7 0.014 4.7E-07 57.5 13.0 151 6-167 62-218 (285)
90 2iks_A DNA-binding transcripti 96.7 0.0094 3.2E-07 59.0 11.7 157 6-170 74-234 (293)
91 3l49_A ABC sugar (ribose) tran 96.7 0.0055 1.9E-07 60.6 9.9 154 6-169 59-224 (291)
92 3k9c_A Transcriptional regulat 96.7 0.01 3.6E-07 58.5 11.9 155 6-169 64-221 (289)
93 3hcw_A Maltose operon transcri 96.7 0.013 4.5E-07 58.0 12.5 158 5-170 65-229 (295)
94 3gv0_A Transcriptional regulat 96.6 0.0099 3.4E-07 58.7 11.3 158 4-169 62-224 (288)
95 2x7x_A Sensor protein; transfe 96.6 0.0093 3.2E-07 60.1 11.1 157 6-170 60-223 (325)
96 2fn9_A Ribose ABC transporter, 96.6 0.0089 3.1E-07 59.0 10.4 153 6-167 56-222 (290)
97 3brq_A HTH-type transcriptiona 96.6 0.0036 1.2E-07 62.1 7.6 157 6-170 75-237 (296)
98 2dvz_A BUGE, putative exported 96.6 0.012 4E-07 58.6 11.1 81 575-657 175-279 (314)
99 2fvy_A D-galactose-binding per 96.6 0.023 7.8E-07 56.6 13.5 151 6-157 57-226 (309)
100 2qpq_A Protein BUG27; alpha/be 96.5 0.016 5.3E-07 57.4 11.6 81 575-657 162-266 (301)
101 2qu7_A Putative transcriptiona 96.5 0.0023 8E-08 63.3 5.6 155 6-170 61-224 (288)
102 3g1w_A Sugar ABC transporter; 96.5 0.035 1.2E-06 55.1 14.1 158 6-170 59-222 (305)
103 2ioy_A Periplasmic sugar-bindi 96.5 0.021 7.1E-07 56.1 12.2 156 6-170 55-217 (283)
104 3bbl_A Regulatory protein of L 96.5 0.011 3.8E-07 58.3 10.1 157 6-170 62-225 (287)
105 3cs3_A Sugar-binding transcrip 96.4 0.032 1.1E-06 54.6 13.4 142 8-159 57-202 (277)
106 3ksm_A ABC-type sugar transpor 96.4 0.017 6E-07 56.3 11.4 156 7-170 57-222 (276)
107 3qsl_A Putative exported prote 96.4 0.015 5.3E-07 58.9 11.4 64 388-454 59-126 (346)
108 1dbq_A Purine repressor; trans 96.4 0.012 4E-07 58.1 10.1 158 6-170 61-224 (289)
109 3h75_A Periplasmic sugar-bindi 96.4 0.037 1.3E-06 56.3 14.0 167 3-170 56-242 (350)
110 3d8u_A PURR transcriptional re 96.4 0.017 5.9E-07 56.4 10.8 155 6-169 57-217 (275)
111 3egc_A Putative ribose operon 96.3 0.011 3.7E-07 58.5 9.2 157 6-170 62-223 (291)
112 3o1i_D Periplasmic protein TOR 96.3 0.0036 1.2E-07 62.4 5.7 150 6-159 61-218 (304)
113 3m9w_A D-xylose-binding peripl 96.3 0.049 1.7E-06 54.3 14.1 148 6-159 56-213 (313)
114 3gyb_A Transcriptional regulat 96.3 0.0057 1.9E-07 60.1 6.8 153 6-170 58-213 (280)
115 3lft_A Uncharacterized protein 96.2 0.031 1E-06 55.3 12.0 152 6-168 60-219 (295)
116 3dbi_A Sugar-binding transcrip 96.2 0.0095 3.3E-07 60.4 8.4 158 6-170 117-279 (338)
117 3clk_A Transcription regulator 96.2 0.0099 3.4E-07 58.7 8.3 154 6-168 63-220 (290)
118 3k4h_A Putative transcriptiona 96.2 0.014 4.8E-07 57.6 9.3 158 5-169 66-228 (292)
119 3qk7_A Transcriptional regulat 96.2 0.013 4.5E-07 58.0 9.1 159 4-170 61-224 (294)
120 2k1e_A Water soluble analogue 96.1 0.0074 2.5E-07 48.8 5.5 73 478-554 19-97 (103)
121 3d02_A Putative LACI-type tran 96.1 0.023 7.9E-07 56.4 10.5 156 6-169 59-223 (303)
122 1jx6_A LUXP protein; protein-l 96.1 0.018 6.2E-07 58.4 9.9 157 6-167 102-265 (342)
123 2fep_A Catabolite control prot 96.1 0.016 5.6E-07 57.1 9.1 157 6-170 70-232 (289)
124 2hsg_A Glucose-resistance amyl 96.1 0.012 4.1E-07 59.5 8.2 157 6-170 114-276 (332)
125 3g85_A Transcriptional regulat 96.1 0.031 1E-06 55.1 11.0 156 4-169 64-224 (289)
126 2rgy_A Transcriptional regulat 96.1 0.0085 2.9E-07 59.2 6.9 157 6-170 65-226 (290)
127 3l6u_A ABC-type sugar transpor 96.0 0.05 1.7E-06 53.6 12.4 155 6-169 62-228 (293)
128 3ix1_A N-formyl-4-amino-5-amin 95.9 0.019 6.4E-07 57.1 8.5 80 375-457 16-99 (302)
129 3gbv_A Putative LACI-family tr 95.9 0.067 2.3E-06 52.9 12.6 155 6-170 67-233 (304)
130 2o20_A Catabolite control prot 95.9 0.018 6.1E-07 58.2 8.2 157 6-170 117-276 (332)
131 4fe7_A Xylose operon regulator 95.8 0.1 3.5E-06 54.4 14.1 160 5-170 73-240 (412)
132 3tb6_A Arabinose metabolism tr 95.7 0.01 3.6E-07 58.8 5.8 148 6-160 69-227 (298)
133 2vk2_A YTFQ, ABC transporter p 95.7 0.054 1.9E-06 53.8 11.0 161 6-170 56-228 (306)
134 2dri_A D-ribose-binding protei 95.7 0.14 4.7E-06 49.8 13.7 156 6-170 55-216 (271)
135 1byk_A Protein (trehalose oper 95.6 0.072 2.5E-06 51.2 11.0 149 6-170 56-206 (255)
136 3e3m_A Transcriptional regulat 95.5 0.076 2.6E-06 54.1 11.6 147 6-160 124-276 (355)
137 1gud_A ALBP, D-allose-binding 95.5 0.13 4.4E-06 50.5 12.8 162 6-170 57-228 (288)
138 2qh8_A Uncharacterized protein 95.4 0.026 8.9E-07 56.1 7.3 129 6-143 67-203 (302)
139 3kjx_A Transcriptional regulat 95.3 0.036 1.2E-06 56.2 8.4 148 6-161 122-274 (344)
140 3e61_A Putative transcriptiona 95.3 0.041 1.4E-06 53.8 8.3 146 6-167 62-211 (277)
141 3huu_A Transcription regulator 95.2 0.063 2.1E-06 53.3 9.6 155 5-170 80-239 (305)
142 2fqx_A Membrane lipoprotein TM 95.2 0.097 3.3E-06 52.3 11.0 157 6-170 60-224 (318)
143 3kke_A LACI family transcripti 95.2 0.07 2.4E-06 52.9 9.9 155 6-169 69-233 (303)
144 3ctp_A Periplasmic binding pro 95.2 0.026 8.7E-07 57.0 6.7 141 6-160 114-257 (330)
145 3hs3_A Ribose operon repressor 95.2 0.043 1.5E-06 53.6 8.0 143 6-167 65-212 (277)
146 1qpz_A PURA, protein (purine n 95.1 0.072 2.5E-06 53.9 9.8 158 6-170 112-275 (340)
147 3ixl_A Amdase, arylmalonate de 95.1 0.087 3E-06 49.9 9.6 85 64-152 105-199 (240)
148 3h5o_A Transcriptional regulat 95.0 0.081 2.8E-06 53.4 9.8 146 6-161 116-266 (339)
149 3jy6_A Transcriptional regulat 95.0 0.071 2.4E-06 52.0 9.0 151 6-170 61-218 (276)
150 3jvd_A Transcriptional regulat 94.9 0.087 3E-06 53.1 9.7 149 6-170 117-268 (333)
151 2ih3_C Voltage-gated potassium 94.9 0.024 8.1E-07 47.4 4.5 70 480-553 42-117 (122)
152 3lkv_A Uncharacterized conserv 94.7 0.052 1.8E-06 53.8 7.1 135 2-146 64-206 (302)
153 2a9h_A Voltage-gated potassium 94.6 0.047 1.6E-06 47.6 5.7 72 479-554 64-141 (155)
154 3bil_A Probable LACI-family tr 94.3 0.12 4E-06 52.5 9.0 156 6-170 120-278 (348)
155 8abp_A L-arabinose-binding pro 94.2 0.14 4.9E-06 50.6 9.1 164 6-170 55-233 (306)
156 3eff_K Voltage-gated potassium 94.1 0.06 2E-06 46.2 5.3 67 482-552 23-95 (139)
157 3h5t_A Transcriptional regulat 93.8 0.16 5.5E-06 51.8 8.8 154 6-167 126-302 (366)
158 1jye_A Lactose operon represso 93.4 0.32 1.1E-05 49.2 10.1 144 6-160 116-264 (349)
159 4h33_A LMO2059 protein; bilaye 93.1 0.12 4.2E-06 43.9 5.5 51 503-553 43-99 (137)
160 3miz_A Putative transcriptiona 92.7 0.048 1.6E-06 54.0 2.7 146 6-159 68-222 (301)
161 2g29_A Nitrate transport prote 92.2 0.68 2.3E-05 48.1 10.9 75 571-646 187-272 (417)
162 2hqb_A Transcriptional activat 92.0 1.3 4.3E-05 43.5 12.0 141 6-158 61-205 (296)
163 3uug_A Multiple sugar-binding 91.5 0.63 2.2E-05 46.4 9.5 151 6-161 57-231 (330)
164 2x7q_A Ca3427, possible thiami 91.2 0.62 2.1E-05 46.4 9.0 91 345-454 13-109 (321)
165 4ddd_A Immunogenic protein; ss 91.2 0.19 6.6E-06 50.3 5.1 77 378-457 47-139 (327)
166 1p7b_A Integral membrane chann 90.3 0.49 1.7E-05 46.9 7.0 55 501-555 94-154 (333)
167 3ldc_A Calcium-gated potassium 90.3 0.41 1.4E-05 36.4 5.1 48 503-550 28-81 (82)
168 3qi7_A Putative transcriptiona 90.2 2.4 8.3E-05 42.4 11.9 154 2-159 81-250 (371)
169 3s99_A Basic membrane lipoprot 89.5 1.8 6.2E-05 43.6 10.6 144 3-158 82-230 (356)
170 3pjs_K KCSA, voltage-gated pot 89.4 0.052 1.8E-06 48.2 -0.8 51 502-552 66-122 (166)
171 3ouf_A Potassium channel prote 88.8 0.39 1.3E-05 38.0 4.0 53 503-555 32-90 (97)
172 2dgd_A 223AA long hypothetical 88.5 0.99 3.4E-05 42.1 7.4 84 64-151 96-189 (223)
173 2q67_A Potassium channel prote 87.4 0.71 2.4E-05 37.7 4.9 50 503-552 49-104 (114)
174 4dik_A Flavoprotein; TM0755, e 87.2 3.1 0.00011 42.7 10.7 134 26-174 226-366 (410)
175 1xl4_A Inward rectifier potass 87.0 0.79 2.7E-05 44.8 5.8 54 501-554 80-139 (301)
176 2zzv_A ABC transporter, solute 86.7 2.8 9.7E-05 42.3 10.1 53 382-434 54-108 (361)
177 1orq_C Potassium channel; volt 85.3 1 3.5E-05 42.0 5.6 68 481-552 147-220 (223)
178 1zbm_A Hypothetical protein AF 85.1 0.94 3.2E-05 43.9 5.4 67 577-647 132-210 (280)
179 2hzl_A Trap-T family sorbitol/ 84.2 5.1 0.00018 40.5 10.7 48 382-429 53-102 (365)
180 2qks_A KIR3.1-prokaryotic KIR 84.0 1.4 4.8E-05 43.4 6.0 52 503-554 78-135 (321)
181 2pfy_A Putative exported prote 83.3 8.1 0.00028 37.7 11.4 49 381-429 21-71 (301)
182 2q5c_A NTRC family transcripti 82.1 15 0.00052 33.1 11.8 131 8-158 30-161 (196)
183 3vou_A ION transport 2 domain 81.5 1.4 4.7E-05 38.0 4.3 48 503-550 52-105 (148)
184 3oxn_A Putative transcriptiona 81.2 21 0.00073 32.8 13.3 84 345-454 17-101 (241)
185 2pfz_A Putative exported prote 80.8 9.8 0.00033 37.1 10.9 49 382-430 21-71 (301)
186 2i49_A Bicarbonate transporter 80.7 4.2 0.00014 42.2 8.5 76 570-646 194-280 (429)
187 2xed_A Putative maleate isomer 80.0 4.3 0.00015 39.0 7.7 80 64-147 134-222 (273)
188 2l82_A Designed protein OR32; 80.0 13 0.00046 28.7 8.7 97 53-158 4-104 (162)
189 3r26_A Molybdate-binding perip 79.9 25 0.00085 32.7 13.1 70 381-454 22-97 (237)
190 4ab5_A Transcriptional regulat 79.2 10 0.00034 34.4 10.0 69 378-454 21-90 (222)
191 3gzg_A Molybdate-binding perip 78.3 9.4 0.00032 36.1 9.5 70 381-454 38-113 (253)
192 1o2d_A Alcohol dehydrogenase, 77.8 6.9 0.00024 39.6 8.9 99 51-153 19-120 (371)
193 3ho7_A OXYR; beta-alpha-barrel 77.5 35 0.0012 30.9 13.3 69 378-454 24-93 (232)
194 4gx0_A TRKA domain protein; me 76.9 3.7 0.00013 44.5 7.0 43 503-545 51-99 (565)
195 3beh_A MLL3241 protein; transm 76.8 1.9 6.5E-05 43.5 4.4 70 479-552 141-216 (355)
196 3ox4_A Alcohol dehydrogenase 2 76.2 4.2 0.00014 41.4 6.7 89 65-154 20-111 (383)
197 3bfj_A 1,3-propanediol oxidore 76.1 9.4 0.00032 38.9 9.4 87 66-153 23-114 (387)
198 2y7p_A LYSR-type regulatory pr 75.8 31 0.0011 31.2 12.3 69 378-454 21-90 (218)
199 1vlj_A NADH-dependent butanol 75.6 6.3 0.00021 40.5 7.9 88 66-153 33-123 (407)
200 1ccw_A Protein (glutamate muta 75.2 16 0.00056 30.6 9.1 87 77-170 4-94 (137)
201 2zsk_A PH1733, 226AA long hypo 74.4 4.4 0.00015 37.7 5.9 41 65-109 104-144 (226)
202 1us5_A Putative GLUR0 ligand b 74.2 3.6 0.00012 40.4 5.6 69 383-454 39-121 (314)
203 4esw_A Pyrimidine biosynthesis 72.7 17 0.00057 36.1 10.2 45 378-425 23-67 (342)
204 1sw5_A Osmoprotection protein 72.6 35 0.0012 32.5 12.1 40 381-422 22-61 (275)
205 1lnq_A MTHK channels, potassiu 72.0 2.1 7.2E-05 42.8 3.2 52 503-554 45-102 (336)
206 2yxb_A Coenzyme B12-dependent 70.6 26 0.00089 30.3 9.6 87 76-169 18-108 (161)
207 2l69_A Rossmann 2X3 fold prote 70.6 18 0.0006 27.1 7.0 53 51-108 26-78 (134)
208 3ce9_A Glycerol dehydrogenase; 69.8 20 0.0007 35.8 10.0 109 51-170 12-122 (354)
209 2r9r_B Paddle chimera voltage 69.5 3.7 0.00013 43.6 4.5 51 502-552 374-430 (514)
210 3jv9_A OXYR, transcriptional r 69.3 9.7 0.00033 34.3 7.0 69 378-454 17-86 (219)
211 2dwu_A Glutamate racemase; iso 68.7 7.3 0.00025 37.5 6.1 116 6-151 67-199 (276)
212 3fni_A Putative diflavin flavo 67.7 20 0.0007 30.9 8.3 91 76-171 4-98 (159)
213 2hxr_A HTH-type transcriptiona 67.4 72 0.0025 28.8 14.0 69 378-454 43-112 (238)
214 2esn_A Probable transcriptiona 66.7 81 0.0028 30.1 13.7 69 378-454 114-186 (310)
215 1rrm_A Lactaldehyde reductase; 66.1 19 0.00066 36.5 9.0 100 51-154 9-111 (386)
216 3hly_A Flavodoxin-like domain; 66.1 11 0.00039 32.6 6.4 88 78-171 2-93 (161)
217 2eq5_A 228AA long hypothetical 65.8 2.6 9E-05 39.3 2.2 74 73-152 113-193 (228)
218 3uhj_A Probable glycerol dehyd 64.7 6 0.0002 40.2 4.8 93 51-151 31-126 (387)
219 3h75_A Periplasmic sugar-bindi 63.4 15 0.0005 36.6 7.5 82 75-158 2-87 (350)
220 1y80_A Predicted cobalamin bin 63.4 43 0.0015 30.3 10.1 89 76-170 88-180 (210)
221 3g1w_A Sugar ABC transporter; 62.7 9.9 0.00034 36.9 6.0 82 76-158 4-87 (305)
222 2gzm_A Glutamate racemase; enz 62.6 6.2 0.00021 37.8 4.3 109 6-143 63-186 (267)
223 3gbv_A Putative LACI-family tr 62.5 19 0.00065 34.7 8.0 86 73-158 5-95 (304)
224 3i42_A Response regulator rece 62.4 26 0.00089 28.2 7.8 56 94-157 16-73 (127)
225 3ezx_A MMCP 1, monomethylamine 62.0 39 0.0013 30.8 9.4 89 77-171 93-187 (215)
226 3dbi_A Sugar-binding transcrip 61.8 14 0.00049 36.5 7.0 86 71-158 56-144 (338)
227 3m9w_A D-xylose-binding peripl 61.5 14 0.00047 36.1 6.8 79 77-158 3-84 (313)
228 2jfn_A Glutamate racemase; cel 61.4 19 0.00066 34.6 7.6 114 3-145 79-208 (285)
229 1jfl_A Aspartate racemase; alp 61.4 4.9 0.00017 37.4 3.2 41 65-109 105-145 (228)
230 3lte_A Response regulator; str 61.0 23 0.0008 28.7 7.3 57 94-158 19-77 (132)
231 3lr1_A Tungstate ABC transport 61.0 6.4 0.00022 36.8 3.9 74 377-454 18-94 (236)
232 3l49_A ABC sugar (ribose) tran 60.9 17 0.00059 34.8 7.3 81 76-158 5-87 (291)
233 3ukm_A Potassium channel subfa 60.8 6.2 0.00021 37.7 3.8 57 504-560 202-271 (280)
234 3l6u_A ABC-type sugar transpor 60.5 13 0.00044 35.7 6.3 83 74-158 6-90 (293)
235 3fzv_A Probable transcriptiona 60.3 40 0.0014 32.2 10.0 69 378-454 108-178 (306)
236 1jq5_A Glycerol dehydrogenase; 59.5 27 0.00092 35.1 8.6 94 51-151 10-106 (370)
237 1mkz_A Molybdenum cofactor bio 58.8 23 0.0008 31.0 7.0 65 76-141 10-77 (172)
238 3fxq_A LYSR type regulator of 58.5 65 0.0022 30.8 11.2 71 378-454 105-176 (305)
239 2l69_A Rossmann 2X3 fold prote 58.1 56 0.0019 24.4 7.7 111 9-129 3-120 (134)
240 2jfq_A Glutamate racemase; cel 57.8 17 0.00059 35.0 6.5 110 6-144 82-207 (286)
241 3ojc_A Putative aspartate/glut 57.7 3.3 0.00011 38.7 1.3 41 65-109 107-148 (231)
242 3eod_A Protein HNR; response r 57.1 37 0.0013 27.4 7.8 71 75-158 6-78 (130)
243 2q9u_A A-type flavoprotein; fl 57.1 75 0.0026 32.3 11.8 90 75-170 255-351 (414)
244 3jy6_A Transcriptional regulat 57.0 16 0.00056 34.7 6.3 80 75-158 6-86 (276)
245 1y81_A Conserved hypothetical 57.0 15 0.00051 30.9 5.2 89 74-170 12-103 (138)
246 1ta9_A Glycerol dehydrogenase; 55.9 49 0.0017 34.2 10.0 96 65-169 80-178 (450)
247 2oho_A Glutamate racemase; iso 55.7 7.7 0.00026 37.2 3.6 108 6-143 72-194 (273)
248 1zuw_A Glutamate racemase 1; ( 55.6 25 0.00087 33.5 7.2 116 7-151 65-196 (272)
249 3grc_A Sensor protein, kinase; 55.5 21 0.00073 29.4 6.1 55 94-156 19-75 (140)
250 3p6l_A Sugar phosphate isomera 55.1 39 0.0013 31.7 8.6 94 64-158 24-129 (262)
251 2vvt_A Glutamate racemase; iso 54.9 21 0.00072 34.5 6.6 116 6-151 84-216 (290)
252 2jwa_A Receptor tyrosine-prote 54.8 16 0.00055 23.5 3.6 23 689-711 17-39 (44)
253 8abp_A L-arabinose-binding pro 54.4 28 0.00095 33.6 7.6 79 77-158 3-83 (306)
254 3tb6_A Arabinose metabolism tr 53.3 23 0.00078 34.0 6.8 80 77-158 16-100 (298)
255 3gl9_A Response regulator; bet 53.2 30 0.001 27.7 6.5 56 94-157 15-72 (122)
256 4edp_A ABC transporter, substr 53.1 1.3E+02 0.0045 29.2 12.7 83 574-657 215-299 (351)
257 3hhf_B Transcriptional regulat 53.0 30 0.001 30.7 7.2 66 378-454 20-86 (213)
258 4gl0_A LMO0810 protein; struct 52.8 1.6E+02 0.0055 28.5 13.1 76 579-655 195-272 (333)
259 1twy_A ABC transporter, peripl 52.5 19 0.00064 34.3 6.0 71 379-454 41-113 (290)
260 3uug_A Multiple sugar-binding 52.4 34 0.0012 33.4 8.0 81 76-158 3-85 (330)
261 3hl0_A Maleylacetate reductase 52.1 24 0.00081 35.3 6.6 96 65-170 23-121 (353)
262 2i2x_B MTAC, methyltransferase 51.9 83 0.0029 29.6 10.1 88 76-171 123-214 (258)
263 3ksm_A ABC-type sugar transpor 51.7 15 0.0005 34.9 5.0 81 78-158 2-85 (276)
264 3um7_A Potassium channel subfa 51.5 12 0.0004 36.5 4.0 49 503-551 115-169 (309)
265 2fp4_A Succinyl-COA ligase [GD 51.4 1.1E+02 0.0038 29.5 11.2 114 22-155 112-234 (305)
266 3muq_A Uncharacterized conserv 51.4 10 0.00034 35.5 3.4 74 377-454 18-94 (237)
267 1jx6_A LUXP protein; protein-l 50.8 28 0.00095 34.3 7.0 82 77-158 44-129 (342)
268 3gt7_A Sensor protein; structu 50.8 38 0.0013 28.5 7.1 56 94-157 20-77 (154)
269 3ist_A Glutamate racemase; str 50.4 14 0.00047 35.3 4.3 119 6-152 65-198 (269)
270 3kke_A LACI family transcripti 50.3 22 0.00074 34.4 6.0 86 70-158 9-95 (303)
271 2pjk_A 178AA long hypothetical 50.0 45 0.0016 29.3 7.4 66 74-141 13-89 (178)
272 3k9c_A Transcriptional regulat 49.7 46 0.0016 31.7 8.3 83 71-158 7-89 (289)
273 1uth_A LYSR-type regulatory pr 49.0 83 0.0028 30.3 10.1 69 378-454 118-187 (315)
274 3s81_A Putative aspartate race 48.8 5.7 0.0002 38.0 1.4 31 6-37 97-127 (268)
275 3o74_A Fructose transport syst 48.4 12 0.00042 35.4 3.8 80 77-158 3-83 (272)
276 3h5o_A Transcriptional regulat 48.3 33 0.0011 33.8 7.1 82 74-158 60-142 (339)
277 1b73_A Glutamate racemase; iso 48.1 17 0.00058 34.4 4.6 67 71-143 101-180 (254)
278 3pzy_A MOG; ssgcid, seattle st 48.0 20 0.0007 31.1 4.7 62 77-141 8-74 (164)
279 2x7x_A Sensor protein; transfe 47.8 29 0.00098 34.0 6.5 82 75-158 5-88 (325)
280 3rfq_A Pterin-4-alpha-carbinol 47.8 26 0.00088 31.1 5.4 66 75-141 29-97 (185)
281 3lkv_A Uncharacterized conserv 47.4 47 0.0016 32.1 8.0 66 76-141 8-77 (302)
282 3d02_A Putative LACI-type tran 47.2 40 0.0014 32.3 7.5 80 77-158 5-87 (303)
283 1dbw_A Transcriptional regulat 46.7 1E+02 0.0035 24.4 8.9 56 94-157 16-73 (126)
284 3umf_A Adenylate kinase; rossm 46.7 9.1 0.00031 35.2 2.4 34 6-39 28-61 (217)
285 1bvy_F Protein (cytochrome P45 46.6 11 0.00038 33.8 2.9 100 57-167 2-110 (191)
286 1e5d_A Rubredoxin\:oxygen oxid 46.2 1.1E+02 0.0039 30.6 11.1 93 70-168 246-344 (402)
287 2pju_A Propionate catabolism o 46.2 49 0.0017 30.4 7.2 108 34-158 66-173 (225)
288 1tmy_A CHEY protein, TMY; chem 46.1 54 0.0018 25.8 7.0 57 94-157 15-73 (120)
289 3iwt_A 178AA long hypothetical 46.0 48 0.0016 29.1 7.0 62 78-141 17-89 (178)
290 3rot_A ABC sugar transporter, 45.7 21 0.00072 34.4 5.1 82 77-158 4-87 (297)
291 3f6p_A Transcriptional regulat 45.7 71 0.0024 25.2 7.7 55 94-156 15-71 (120)
292 3uhf_A Glutamate racemase; str 45.6 15 0.0005 35.1 3.7 33 5-37 83-115 (274)
293 3brq_A HTH-type transcriptiona 45.5 38 0.0013 32.3 7.0 85 71-158 14-102 (296)
294 3s99_A Basic membrane lipoprot 45.3 22 0.00076 35.5 5.2 78 75-155 25-107 (356)
295 3hp4_A GDSL-esterase; psychrot 45.2 1.5E+02 0.005 25.5 10.4 81 77-157 3-103 (185)
296 3jzd_A Iron-containing alcohol 45.2 28 0.00097 34.7 5.9 96 65-170 25-123 (358)
297 4es6_A Uroporphyrinogen-III sy 45.1 23 0.0008 33.3 5.1 113 33-155 87-206 (254)
298 2bon_A Lipid kinase; DAG kinas 45.0 41 0.0014 33.2 7.1 96 51-156 10-105 (332)
299 3eul_A Possible nitrate/nitrit 44.9 45 0.0015 27.9 6.6 72 75-158 14-88 (152)
300 3hzh_A Chemotaxis response reg 44.8 35 0.0012 28.9 5.9 58 94-158 49-110 (157)
301 3t6k_A Response regulator rece 44.7 48 0.0016 27.1 6.6 56 94-157 17-74 (136)
302 3qk7_A Transcriptional regulat 44.4 36 0.0012 32.6 6.5 80 75-158 5-89 (294)
303 1xrs_B D-lysine 5,6-aminomutas 44.3 1.3E+02 0.0043 28.3 9.8 100 65-170 107-224 (262)
304 3f6c_A Positive transcription 43.8 29 0.00098 28.2 5.0 58 94-158 14-73 (134)
305 3bbl_A Regulatory protein of L 43.8 32 0.0011 32.8 6.0 79 77-158 5-88 (287)
306 3to5_A CHEY homolog; alpha(5)b 43.7 56 0.0019 27.1 6.7 57 94-157 25-83 (134)
307 3cnb_A DNA-binding response re 43.6 66 0.0023 26.2 7.4 56 94-156 21-79 (143)
308 3lua_A Response regulator rece 43.4 60 0.002 26.5 7.0 54 94-155 17-75 (140)
309 3apt_A Methylenetetrahydrofola 43.4 2.3E+02 0.008 27.3 12.1 100 60-160 84-202 (310)
310 5nul_A Flavodoxin; electron tr 43.3 27 0.00092 29.0 4.7 82 79-171 1-90 (138)
311 1i6a_A OXYR, hydrogen peroxide 43.2 55 0.0019 29.3 7.3 70 378-454 18-87 (219)
312 3k4h_A Putative transcriptiona 43.0 19 0.00064 34.5 4.2 82 73-158 5-93 (292)
313 3kto_A Response regulator rece 42.9 38 0.0013 27.6 5.7 57 94-158 19-79 (136)
314 3kht_A Response regulator; PSI 42.7 77 0.0026 25.9 7.7 58 94-157 18-77 (144)
315 3sya_A G protein-activated inw 42.5 27 0.00094 34.4 5.1 55 502-556 90-152 (340)
316 3fst_A 5,10-methylenetetrahydr 42.5 2.4E+02 0.0082 27.1 13.4 99 61-160 96-205 (304)
317 2qip_A Protein of unknown func 42.4 95 0.0033 26.7 8.3 91 65-158 36-134 (165)
318 1y5e_A Molybdenum cofactor bio 42.2 69 0.0023 27.8 7.3 66 74-141 11-80 (169)
319 3onm_A Transcriptional regulat 42.1 47 0.0016 30.3 6.8 82 345-454 25-107 (238)
320 3out_A Glutamate racemase; str 42.0 11 0.00039 35.9 2.3 110 2-143 63-188 (268)
321 3egc_A Putative ribose operon 42.0 15 0.00052 35.2 3.3 82 74-158 6-88 (291)
322 2zay_A Response regulator rece 41.9 61 0.0021 26.7 6.9 54 94-155 21-76 (147)
323 2ql3_A Probable transcriptiona 41.9 45 0.0015 29.5 6.5 69 378-454 18-87 (209)
324 2qxy_A Response regulator; reg 41.0 80 0.0027 25.7 7.5 57 94-158 17-74 (142)
325 3okf_A 3-dehydroquinate syntha 40.8 72 0.0025 32.1 8.1 109 51-169 41-158 (390)
326 1al3_A Cys regulon transcripti 40.6 2.1E+02 0.0072 27.4 11.7 71 378-454 106-176 (324)
327 1tjy_A Sugar transport protein 40.5 23 0.0008 34.5 4.5 80 77-158 4-86 (316)
328 2fqx_A Membrane lipoprotein TM 40.3 94 0.0032 30.2 8.9 64 76-142 4-71 (318)
329 3tsm_A IGPS, indole-3-glycerol 40.2 1.9E+02 0.0064 27.4 10.4 86 65-158 82-170 (272)
330 2d59_A Hypothetical protein PH 40.1 31 0.0011 29.1 4.6 86 76-169 22-110 (144)
331 2qr3_A Two-component system re 40.1 52 0.0018 26.8 6.1 56 94-157 16-78 (140)
332 1atg_A MODA, periplasmic molyb 39.9 23 0.00078 32.2 4.1 72 380-455 14-91 (231)
333 2j48_A Two-component sensor ki 39.7 60 0.002 25.1 6.3 56 94-157 14-71 (119)
334 3e3m_A Transcriptional regulat 39.5 38 0.0013 33.6 6.0 82 74-158 68-150 (355)
335 2is8_A Molybdopterin biosynthe 39.5 39 0.0013 29.2 5.2 62 78-141 3-70 (164)
336 3hdv_A Response regulator; PSI 39.1 57 0.0019 26.4 6.2 56 94-157 20-78 (136)
337 3zy2_A Putative GDP-fucose pro 39.0 50 0.0017 32.3 6.2 88 57-157 261-348 (362)
338 2rgy_A Transcriptional regulat 38.9 41 0.0014 32.1 5.9 80 75-158 7-91 (290)
339 3ff4_A Uncharacterized protein 38.8 14 0.00049 30.2 2.1 85 75-169 3-91 (122)
340 2xij_A Methylmalonyl-COA mutas 38.6 2.4E+02 0.008 31.2 12.1 77 77-159 605-685 (762)
341 3um7_A Potassium channel subfa 38.4 30 0.001 33.6 4.6 48 504-551 225-284 (309)
342 3sr0_A Adenylate kinase; phosp 38.3 16 0.00055 33.2 2.6 31 9-39 2-32 (206)
343 3l4e_A Uncharacterized peptida 38.1 27 0.00091 31.7 4.0 97 65-170 16-121 (206)
344 2iks_A DNA-binding transcripti 38.1 22 0.00077 34.1 3.9 86 71-158 15-101 (293)
345 3cg4_A Response regulator rece 37.9 1.6E+02 0.0054 23.7 11.3 54 94-155 20-75 (142)
346 3jte_A Response regulator rece 37.8 73 0.0025 26.0 6.7 56 94-157 16-75 (143)
347 2fn9_A Ribose ABC transporter, 37.6 47 0.0016 31.6 6.1 79 77-158 3-84 (290)
348 3cz5_A Two-component response 37.5 74 0.0025 26.4 6.8 58 94-158 18-78 (153)
349 3lmz_A Putative sugar isomeras 37.5 58 0.002 30.4 6.6 94 64-158 32-127 (257)
350 2fvy_A D-galactose-binding per 37.4 49 0.0017 31.7 6.3 79 77-158 3-85 (309)
351 2g2c_A Putative molybdenum cof 37.1 42 0.0014 29.2 5.0 62 78-141 7-77 (167)
352 3cvg_A Putative metal binding 37.0 21 0.0007 34.6 3.3 73 378-454 33-115 (294)
353 1iuk_A Hypothetical protein TT 36.8 17 0.00059 30.6 2.4 88 76-170 13-104 (140)
354 2pln_A HP1043, response regula 36.7 81 0.0028 25.5 6.8 53 94-156 31-83 (137)
355 2ohh_A Type A flavoprotein FPR 36.7 1.4E+02 0.0047 30.1 9.8 91 74-170 254-353 (404)
356 3gv0_A Transcriptional regulat 36.4 37 0.0013 32.3 5.2 83 73-158 5-90 (288)
357 2rdm_A Response regulator rece 35.7 1.2E+02 0.004 24.1 7.6 56 94-157 18-77 (132)
358 3huu_A Transcription regulator 35.6 21 0.00072 34.5 3.2 86 70-158 16-107 (305)
359 3tmg_A Glycine betaine, L-prol 35.4 1E+02 0.0034 29.4 8.0 42 379-424 30-71 (280)
360 3ukm_A Potassium channel subfa 35.3 33 0.0011 32.7 4.3 50 503-552 93-148 (280)
361 4ecf_A ABC-type phosphate tran 35.2 57 0.0019 30.8 6.1 71 379-454 17-91 (264)
362 2dri_A D-ribose-binding protei 35.0 54 0.0019 30.8 6.0 80 77-158 2-83 (271)
363 3hv2_A Response regulator/HD d 34.9 63 0.0021 26.9 5.9 57 94-158 27-85 (153)
364 2rjn_A Response regulator rece 34.9 76 0.0026 26.4 6.5 56 94-157 20-77 (154)
365 3kn3_A Putative periplasmic pr 34.9 21 0.00073 33.3 2.9 73 378-454 19-94 (242)
366 2jfz_A Glutamate racemase; cel 34.9 20 0.00067 33.9 2.7 113 2-143 56-183 (255)
367 3c3m_A Response regulator rece 34.7 1E+02 0.0035 24.9 7.2 56 94-157 16-73 (138)
368 3clk_A Transcription regulator 34.6 46 0.0016 31.7 5.5 81 75-158 7-89 (290)
369 1mb3_A Cell division response 34.3 75 0.0026 25.0 6.1 56 94-157 14-71 (124)
370 1oj7_A Hypothetical oxidoreduc 34.2 30 0.001 35.3 4.2 83 67-153 43-128 (408)
371 2h3h_A Sugar ABC transporter, 34.2 42 0.0014 32.4 5.2 79 78-158 3-83 (313)
372 2h9b_A HTH-type transcriptiona 34.1 70 0.0024 30.7 6.8 69 378-454 103-172 (312)
373 3bil_A Probable LACI-family tr 33.9 40 0.0014 33.3 5.1 79 76-158 66-146 (348)
374 3cg0_A Response regulator rece 33.8 85 0.0029 25.4 6.5 56 94-156 22-80 (140)
375 1jye_A Lactose operon represso 33.7 56 0.0019 32.3 6.1 66 75-141 60-126 (349)
376 3e61_A Putative transcriptiona 33.4 34 0.0012 32.3 4.3 79 75-158 7-87 (277)
377 2ioy_A Periplasmic sugar-bindi 33.3 55 0.0019 31.0 5.8 80 77-158 2-83 (283)
378 2fep_A Catabolite control prot 32.3 56 0.0019 31.1 5.7 80 76-158 16-96 (289)
379 3a10_A Response regulator; pho 32.3 98 0.0033 23.9 6.4 56 94-157 14-71 (116)
380 3f6r_A Flavodoxin; FMN binding 32.1 67 0.0023 26.8 5.5 83 77-168 2-93 (148)
381 1req_A Methylmalonyl-COA mutas 31.4 2E+02 0.0068 31.5 10.1 77 77-159 597-677 (727)
382 2lpm_A Two-component response 31.3 38 0.0013 27.6 3.6 58 94-158 21-80 (123)
383 3bul_A Methionine synthase; tr 31.1 2.3E+02 0.0078 30.2 10.3 87 76-170 98-188 (579)
384 1o1x_A Ribose-5-phosphate isom 31.1 1.4E+02 0.0048 25.4 6.9 60 82-144 17-81 (155)
385 1qkk_A DCTD, C4-dicarboxylate 31.0 88 0.003 26.0 6.2 56 94-157 16-73 (155)
386 1mvo_A PHOP response regulator 31.0 1E+02 0.0035 24.7 6.5 57 94-158 16-74 (136)
387 2o20_A Catabolite control prot 31.0 58 0.002 31.8 5.7 80 75-158 62-143 (332)
388 3kjx_A Transcriptional regulat 30.9 75 0.0026 31.1 6.5 79 77-158 69-148 (344)
389 2hqb_A Transcriptional activat 30.7 50 0.0017 31.8 5.0 64 77-143 6-73 (296)
390 3hs3_A Ribose operon repressor 30.7 55 0.0019 30.9 5.3 69 71-141 5-75 (277)
391 1ycg_A Nitric oxide reductase; 30.4 1.9E+02 0.0064 29.0 9.6 95 68-168 243-343 (398)
392 2fyi_A HTH-type transcriptiona 30.2 85 0.0029 28.2 6.4 71 378-454 27-97 (228)
393 2jba_A Phosphate regulon trans 30.2 82 0.0028 24.9 5.6 56 94-157 15-72 (127)
394 2h98_A HTH-type transcriptiona 30.1 93 0.0032 29.9 7.0 69 378-454 103-172 (313)
395 2vk2_A YTFQ, ABC transporter p 29.9 48 0.0017 31.9 4.8 80 77-158 3-84 (306)
396 2vvr_A Ribose-5-phosphate isom 29.6 2E+02 0.0067 24.3 7.6 60 82-144 6-70 (149)
397 3nhm_A Response regulator; pro 29.5 96 0.0033 24.8 6.0 55 94-157 17-73 (133)
398 3re1_A Uroporphyrinogen-III sy 29.5 22 0.00076 33.9 2.1 113 33-155 95-214 (269)
399 2pl1_A Transcriptional regulat 29.5 1.3E+02 0.0044 23.4 6.7 56 94-157 13-70 (121)
400 2qv7_A Diacylglycerol kinase D 29.4 2.4E+02 0.0081 27.6 9.8 86 67-155 15-102 (337)
401 3kbq_A Protein TA0487; structu 29.3 71 0.0024 27.9 5.1 62 77-141 4-70 (172)
402 2rjo_A Twin-arginine transloca 29.3 56 0.0019 31.9 5.2 80 77-158 6-89 (332)
403 1ixc_A CBNR, LYSR-type regulat 29.2 93 0.0032 29.3 6.7 69 378-454 104-173 (294)
404 1sg6_A Pentafunctional AROM po 29.1 2E+02 0.0067 29.0 9.3 111 51-169 12-140 (393)
405 3c3k_A Alanine racemase; struc 29.0 98 0.0034 29.2 6.8 79 75-158 7-87 (285)
406 3q9s_A DNA-binding response re 28.9 1.7E+02 0.0059 26.9 8.3 69 74-155 35-105 (249)
407 3rqi_A Response regulator prot 28.8 77 0.0026 27.6 5.6 57 94-158 20-78 (184)
408 1k68_A Phytochrome response re 28.3 1.1E+02 0.0036 24.6 6.1 56 94-157 15-81 (140)
409 3miz_A Putative transcriptiona 28.1 87 0.003 29.9 6.3 71 70-142 7-79 (301)
410 2qsj_A DNA-binding response re 28.1 1.2E+02 0.0042 25.0 6.6 57 94-157 16-76 (154)
411 2qv0_A Protein MRKE; structura 27.9 96 0.0033 25.2 5.8 57 94-157 22-81 (143)
412 4e7p_A Response regulator; DNA 27.7 1.1E+02 0.0037 25.3 6.1 59 94-158 33-93 (150)
413 3he8_A Ribose-5-phosphate isom 27.6 1.3E+02 0.0045 25.4 6.2 60 82-144 5-69 (149)
414 3d8u_A PURR transcriptional re 27.6 52 0.0018 30.9 4.5 79 77-158 4-83 (275)
415 3s5p_A Ribose 5-phosphate isom 27.3 1.2E+02 0.0042 26.1 6.0 64 78-144 23-90 (166)
416 2gkg_A Response regulator homo 27.2 1.1E+02 0.0039 23.9 6.0 55 94-156 18-75 (127)
417 1dz3_A Stage 0 sporulation pro 27.1 1.1E+02 0.0039 24.2 6.0 56 94-156 15-73 (130)
418 3o1l_A Formyltetrahydrofolate 27.0 2E+02 0.0068 27.7 8.3 136 9-158 24-182 (302)
419 4dad_A Putative pilus assembly 26.7 99 0.0034 25.3 5.7 57 94-158 33-94 (146)
420 3guv_A Site-specific recombina 26.5 2E+02 0.0069 24.5 7.8 38 121-158 61-106 (167)
421 3ph3_A Ribose-5-phosphate isom 26.4 1.4E+02 0.0047 25.8 6.2 63 78-144 22-89 (169)
422 3lft_A Uncharacterized protein 26.4 69 0.0024 30.6 5.1 65 77-142 3-71 (295)
423 4exl_A PBP 1, phosphate-bindin 26.3 1.1E+02 0.0037 28.8 6.4 70 380-454 18-91 (265)
424 2duw_A Putative COA-binding pr 26.3 23 0.0008 30.0 1.4 88 76-169 13-103 (145)
425 2hsg_A Glucose-resistance amyl 26.1 75 0.0026 30.9 5.5 80 76-158 60-140 (332)
426 3lvu_A ABC transporter, peripl 26.1 1.2E+02 0.0042 28.1 6.8 69 63-138 100-182 (258)
427 1uuy_A CNX1, molybdopterin bio 26.0 1.5E+02 0.0053 25.4 6.8 65 76-141 5-79 (167)
428 3o1i_D Periplasmic protein TOR 26.0 36 0.0012 32.7 3.0 81 77-158 6-88 (304)
429 3cfy_A Putative LUXO repressor 26.0 94 0.0032 25.2 5.3 56 94-157 17-74 (137)
430 3heb_A Response regulator rece 25.9 1.6E+02 0.0053 24.2 6.9 69 94-170 17-98 (152)
431 3r0j_A Possible two component 25.9 1.1E+02 0.0038 28.2 6.4 57 94-158 36-94 (250)
432 1gud_A ALBP, D-allose-binding 25.8 83 0.0028 29.8 5.6 82 77-158 2-85 (288)
433 3g85_A Transcriptional regulat 25.7 56 0.0019 31.0 4.3 77 72-150 7-85 (289)
434 3s40_A Diacylglycerol kinase; 25.6 2.3E+02 0.0079 27.2 8.7 77 75-155 7-85 (304)
435 2qzj_A Two-component response 25.5 1.5E+02 0.0051 23.9 6.5 56 94-157 17-74 (136)
436 1srr_A SPO0F, sporulation resp 25.2 1.1E+02 0.0036 24.1 5.4 56 94-157 16-73 (124)
437 3jvd_A Transcriptional regulat 25.1 30 0.001 34.0 2.3 67 73-142 61-128 (333)
438 4gd5_A Phosphate ABC transport 25.1 83 0.0028 29.8 5.4 69 382-454 49-122 (279)
439 3crn_A Response regulator rece 24.9 1.3E+02 0.0045 24.0 6.1 56 94-157 16-73 (132)
440 3p9z_A Uroporphyrinogen III co 24.7 98 0.0033 28.4 5.6 112 32-153 67-180 (229)
441 2b4a_A BH3024; flavodoxin-like 24.6 1.3E+02 0.0045 24.2 6.0 56 94-157 28-86 (138)
442 2klu_A T-cell surface glycopro 24.4 99 0.0034 21.7 3.9 15 689-703 12-26 (70)
443 3hdg_A Uncharacterized protein 24.4 75 0.0026 25.7 4.4 56 94-157 20-77 (137)
444 1dbq_A Purine repressor; trans 24.4 1.1E+02 0.0039 28.7 6.3 65 76-142 7-72 (289)
445 4em8_A Ribose 5-phosphate isom 24.2 1.1E+02 0.0038 25.7 5.1 63 78-144 9-75 (148)
446 3h1g_A Chemotaxis protein CHEY 23.3 2E+02 0.0068 22.7 6.8 57 94-157 18-77 (129)
447 3k7p_A Ribose 5-phosphate isom 23.3 2.3E+02 0.0078 24.7 7.0 75 65-144 12-93 (179)
448 1kgs_A DRRD, DNA binding respo 23.1 1.7E+02 0.006 26.0 7.1 57 94-158 15-73 (225)
449 3lou_A Formyltetrahydrofolate 23.1 1.3E+02 0.0044 28.9 6.1 136 9-158 12-172 (292)
450 1yio_A Response regulatory pro 22.7 1.8E+02 0.0062 25.5 7.0 56 94-157 17-74 (208)
451 1jbe_A Chemotaxis protein CHEY 22.7 2.5E+02 0.0086 21.9 7.4 56 94-156 17-74 (128)
452 1zgz_A Torcad operon transcrip 22.5 2.2E+02 0.0077 21.9 7.0 54 94-155 15-70 (122)
453 3mw8_A Uroporphyrinogen-III sy 22.5 1.3E+02 0.0045 27.6 6.1 115 32-155 75-193 (240)
454 3spc_A Inward-rectifier K+ cha 22.4 54 0.0018 32.3 3.3 55 502-556 93-155 (343)
455 3pdi_B Nitrogenase MOFE cofact 22.3 2.1E+02 0.0071 29.6 8.0 45 65-115 302-346 (458)
456 1usg_A Leucine-specific bindin 22.2 2.5E+02 0.0085 27.0 8.5 80 78-158 4-94 (346)
457 1di6_A MOGA, molybdenum cofact 21.9 1.2E+02 0.0042 27.0 5.4 63 77-141 4-74 (195)
458 3kyj_B CHEY6 protein, putative 21.8 82 0.0028 25.8 4.2 57 94-157 26-86 (145)
459 3brs_A Periplasmic binding pro 21.8 48 0.0016 31.5 2.9 81 77-158 6-91 (289)
460 3luf_A Two-component system re 21.6 4E+02 0.014 24.5 9.4 114 30-158 72-196 (259)
461 3snk_A Response regulator CHEY 21.6 47 0.0016 27.0 2.5 57 94-158 27-86 (135)
462 2b99_A Riboflavin synthase; lu 21.6 1.6E+02 0.0055 25.0 5.6 78 78-158 4-84 (156)
463 3qbe_A 3-dehydroquinate syntha 21.5 5.3E+02 0.018 25.5 10.5 108 50-169 22-138 (368)
464 3kos_A HTH-type transcriptiona 21.3 3.5E+02 0.012 23.4 8.8 64 378-452 25-89 (219)
465 1xmx_A Hypothetical protein VC 21.2 3.5E+02 0.012 27.0 9.2 90 66-158 17-113 (385)
466 1req_B Methylmalonyl-COA mutas 21.2 1.9E+02 0.0065 31.2 7.5 66 94-168 527-596 (637)
467 1s8n_A Putative antiterminator 21.1 1.5E+02 0.0052 26.0 6.1 57 94-157 26-84 (205)
468 4eqb_A Spermidine/putrescine A 21.1 5.4E+02 0.018 24.4 13.1 77 578-655 191-269 (330)
469 1ys7_A Transcriptional regulat 20.8 2E+02 0.007 25.7 7.1 56 94-157 20-77 (233)
470 3o6p_A Peptide ABC transporter 20.8 1.2E+02 0.0041 27.6 5.4 54 78-139 100-155 (229)
471 3pdi_A Nitrogenase MOFE cofact 20.7 2.7E+02 0.0091 29.0 8.5 42 66-113 322-363 (483)
472 3dmy_A Protein FDRA; predicted 20.5 4.5E+02 0.015 27.2 10.0 113 22-157 76-198 (480)
473 1jlj_A Gephyrin; globular alph 20.5 1.5E+02 0.005 26.3 5.6 68 73-141 11-86 (189)
474 2qh8_A Uncharacterized protein 20.3 93 0.0032 29.8 4.7 67 76-142 8-78 (302)
475 2hna_A Protein MIOC, flavodoxi 20.2 96 0.0033 25.8 4.2 68 77-156 2-76 (147)
476 3u7q_B Nitrogenase molybdenum- 20.2 3.3E+02 0.011 28.5 9.2 72 72-151 360-435 (523)
477 2pbq_A Molybdenum cofactor bio 20.1 1.3E+02 0.0044 26.3 5.1 62 77-141 6-76 (178)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=1.5e-85 Score=767.61 Aligned_cols=669 Identities=19% Similarity=0.258 Sum_probs=549.6
Q ss_pred ccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEE
Q 043468 3 LMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVI 82 (720)
Q Consensus 3 Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii 82 (720)
|+ +++|.|||||.+|+.+.+++++++.+++|+|+++. +.. ..++|+||+.|+ ++.+++++++++||++|++|
T Consensus 56 l~-~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~--~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii 127 (823)
T 3kg2_A 56 QF-SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF--PTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYL 127 (823)
T ss_dssp HH-HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSC--CCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEE
T ss_pred HH-hcCcEEEEcCCChhHHHHHHHHhhcCCCceeeccc--CCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEE
Confidence 45 46899999999999999999999999999999843 222 357899999999 78999999999999999999
Q ss_pred EEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCC----CcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468 83 YEDIDSSATGILPHLSDALREAGAEIIHVLALPHF----PSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKM 158 (720)
Q Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~ 158 (720)
| |+++|... .+.+++.+++.|++|+..+.++.+ +. |+.+++++|+++++|+|++++..+++..++++|+++|+
T Consensus 128 ~-d~~~g~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~ 204 (823)
T 3kg2_A 128 Y-DSDRGLST-LQAVLDSAAEKKWQVTAINVGNINNDKKDE-TYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGK 204 (823)
T ss_dssp E-CGGGCTHH-HHHHHHHHHHTTCEEEEEECSSCCSSSTTT-TTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTT
T ss_pred E-eCChhHHH-HHHHHHHhhccCCceEEEEeecCCCCccch-hHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCc
Confidence 9 56667655 999999999999999999887765 44 99999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHH
Q 043468 159 MEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAV 238 (720)
Q Consensus 159 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav 238 (720)
.++.++|+.++........ . .......|++++..+.++ +|..++|.++|+++++..++..... .++.+++.+||||
T Consensus 205 ~~~~~~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~-~~~~~a~~~YDAv 280 (823)
T 3kg2_A 205 HVKGYHYIIANLGFTDGDL-L-KIQFGGAEVSGFQIVDYD-DSLVSKFIERWSTLEEKEYPGAHTA-TIKYTSALTYDAV 280 (823)
T ss_dssp TBTTCEEEECSSBSSSSCC-S-SSSSSBCEEEEEESSCTT-SHHHHHHHHHHTTSCTTTSTTCCSS-CCCHHHHHHHHHH
T ss_pred CCCCeEEEEecccccccch-H-HhhcCCCCceEeeeecCC-chHHHHHHHHHHhhcccccCCCCcc-ccchhhHHHHHHH
Confidence 9888999999854332211 1 112334457777655444 6999999999998887654433222 5778899999999
Q ss_pred HHHHHHHHHHHH----------------------HhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeecCceE
Q 043468 239 WSVALAMEQKSE----------------------KLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYR 296 (720)
Q Consensus 239 ~~~a~al~~~~~----------------------~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~ 296 (720)
+++++|+++++. .+++.+.++|++++|+|++|+++||++|++.+..++|++++++++.
T Consensus 281 ~~la~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~ 360 (823)
T 3kg2_A 281 QVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPR 360 (823)
T ss_dssp HHHHHHHHHHHTTTCCCCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEE
T ss_pred HHHHHHHHHHHhhccccccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCe
Confidence 999999999764 4788999999999999999999999999998899999999999999
Q ss_pred EEEEEecCCCccccccCCCCccCcccccCceeeCCCCCCCCcccccCCCCCCeEEeecCCCccccceEeee--ccCCCce
Q 043468 297 ELGFWTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEY--DELRNFT 374 (720)
Q Consensus 297 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~l~v~~~~~~p~~p~~~~~~--~~~~~~~ 374 (720)
.||.|++..++..... . ....++++|+|++...+||. +... ++.++++
T Consensus 361 ~vg~w~~~~g~~~~~~-------------------------~--~~~~~~~~l~v~~~~~~P~~---~~~~~~~~~~~~~ 410 (823)
T 3kg2_A 361 KIGYWSEVDKMVLTED-------------------------D--TSGLEQKTVVVTTILESPYV---MMKANHAALAGNE 410 (823)
T ss_dssp EEEEEETTTEEEECCC-------------------------C--CSSCCCCCEEEEECCCTTTS---EECTTGGGCCGGG
T ss_pred eEEEEcCCCCceeccC-------------------------c--ccccCCCEEEEEEecCCCcE---EEecCccccCCCC
Confidence 9999999877653210 0 12356899999997766664 4321 2234567
Q ss_pred eEEEEeHHHHHHHHHhCCCccceEEec---------CCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccc
Q 043468 375 YFGGFSIELFKALVEKLPFYLPYNFIP---------FNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESG 445 (720)
Q Consensus 375 ~~~G~~~dl~~~la~~l~~~~~~~~~~---------~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~ 445 (720)
++.|+++|+++++++++||++++..++ .+|+|++++++|.+|++|++++++++|++|.+.++||.||+..+
T Consensus 411 ~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~ 490 (823)
T 3kg2_A 411 RYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLG 490 (823)
T ss_dssp GEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEEC
T ss_pred ceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCC
Confidence 999999999999999999999988876 24679999999999999999999999999999999999999999
Q ss_pred eEEEEeccc-CCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcc--------------ccccchhhhh
Q 043468 446 LVMIFPVQK-SGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSA--------------LHQTGTFFWL 510 (720)
Q Consensus 446 ~~~~v~~~~-~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~--------------~~~~~~~~~~ 510 (720)
.++++|++. ..++++.|+.||++.+|++++++++++++++|++.|+++.++.... ...+.+++|+
T Consensus 491 ~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (823)
T 3kg2_A 491 ISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWF 570 (823)
T ss_dssp EEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHH
T ss_pred EEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHH
Confidence 999999987 5678899999999999999999999999999999997654432211 1235688999
Q ss_pred hh---hccCCc--ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhc-CCeEEEecC-------
Q 043468 511 SF---NLHGEK--LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSS-NAIIGYSRC------- 577 (720)
Q Consensus 511 ~~---~~~g~~--~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~-~~~~~~~~~------- 577 (720)
++ ++||.. |++.++|+++++||++++|++++|+|+|+++||.+++.++|+|++||.++ ++++++..+
T Consensus 571 ~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~ 650 (823)
T 3kg2_A 571 SLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFF 650 (823)
T ss_dssp TTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHH
T ss_pred HHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHH
Confidence 99 555553 78999999999999999999999999999999999999999999999985 477876543
Q ss_pred --------------------------cchHHHHHh-cCcccEEEechhHHHHHHHhc-CCCcEeeCCeeecCceeeEecC
Q 043468 578 --------------------------LGDYASDLK-SRKTGAVFLEVAEAKIFLAKY-CKGFTVAGPTYKVGGLGFAFPK 629 (720)
Q Consensus 578 --------------------------~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k 629 (720)
.++++++++ +++.++++.+...+.|+.++. |+ +..+++.+...+|+++++|
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~~~~~k 729 (823)
T 3kg2_A 651 RRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPK 729 (823)
T ss_dssp HHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEECCEEET
T ss_pred HhccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCCc-eEEccccccccceeEeecC
Confidence 345666665 466688999998888887776 88 8899999999999999999
Q ss_pred CCCChHHHHHHHhcccccCcHHHHHHHhcCCC-CCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043468 630 GSPLLPSVIEALLKVSESGKLRELETSMIASE-KCMEVNLHDDDDISSLSPSGFWVLFVLSGGISTIALVIFLWRCNWKI 708 (720)
Q Consensus 630 ~s~~~~~in~~i~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~f~il~~g~~ls~~v~~~E~~~~~ 708 (720)
+|||++.||++|++++|+|++++|.++|+.+. .|............+|+++++.|+|+++++|+++|+++|++|++|++
T Consensus 730 ~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~ 809 (823)
T 3kg2_A 730 GSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKS 809 (823)
T ss_dssp TCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999765 88874333345677999999999999999999999999999999988
Q ss_pred hhhhhhhhc
Q 043468 709 NENLLVNKK 717 (720)
Q Consensus 709 ~~~~~~~~k 717 (720)
++++++++.
T Consensus 810 ~~~~~~~~~ 818 (823)
T 3kg2_A 810 RAEAKRMKG 818 (823)
T ss_dssp ---------
T ss_pred chhhhhccC
Confidence 877766554
No 2
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=1.3e-36 Score=327.35 Aligned_cols=304 Identities=19% Similarity=0.326 Sum_probs=260.1
Q ss_pred ccccc-CCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCccccc-CCCCeEEEeecChHHHHHHHHHHHHhCCCeEE
Q 043468 2 DLMDS-QKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-ERWPFLLQASQNQLAQMKAIAAIVQSWEWHQV 79 (720)
Q Consensus 2 ~Li~~-~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v 79 (720)
+|+++ ++|.+||||.+|+.+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.+++++++++||++|
T Consensus 78 ~li~~~~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v 157 (433)
T 4f11_A 78 DAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRV 157 (433)
T ss_dssp HHHHHSCCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEE
T ss_pred HHHhcCCceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEE
Confidence 57765 49999999999999999999999999999999999999985 57999999999999999999999999999999
Q ss_pred EEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 80 TVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 80 ~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
++||+|+++|... .+.+++.+++.|++|+..+.++. |+.+++.+|+++++|+|++++.+.++..++++++++|+.
T Consensus 158 ~ii~~~~~~g~~~-~~~~~~~~~~~g~~v~~~~~~~~----d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~ 232 (433)
T 4f11_A 158 GTLTQDVQRFSEV-RNDLTGVLYGEDIEISDTESFSN----DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMY 232 (433)
T ss_dssp EEEEESSHHHHHH-HHHHHHHSSSSSCEEEEEEEESS----CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCC
T ss_pred EEEEecchhhHHH-HHHHHHHHHHcCceEEEEeccCc----CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 9999999888655 89999999999999999988872 889999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCccccccc-----------ccCcchhhhccccEEEEecCCCC-------ChhHHHHHHHHHHH-hcccCCC
Q 043468 160 EKDYIWITTDAFTSLVH-----------SINTSSISSMQGILGVRSHFPED-------KPKFQDFCKRFRKR-FGAEYPE 220 (720)
Q Consensus 160 ~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~f~~~~~~~-~~~~~~~ 220 (720)
+++++|+.++.+...+. ........+.+|++++..+.+.. ++..++|.++|.++ ++.
T Consensus 233 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~~---- 308 (433)
T 4f11_A 233 GSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGV---- 308 (433)
T ss_dssp STTCEEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTTS----
T ss_pred CCCeEEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCCC----
Confidence 87799999988433221 12223457889999888765321 24578999999987 444
Q ss_pred CCCCCCCCchhhhHhhHHHHHHHHHHHHHHH-------------------hHHHHHHHHHcccccCceeeEEEecCCcCC
Q 043468 221 EDNNHEPGALAVQTYDAVWSVALAMEQKSEK-------------------LNQKLLRRILLSDFDGLTGKVEFMNQKVAP 281 (720)
Q Consensus 221 ~~~~~~~~~~~~~~Ydav~~~a~al~~~~~~-------------------~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~ 281 (720)
.|+.+++.+||||+++++|+++++.. +++.|.++|++++|+|++|+++| ++|++.
T Consensus 309 -----~~~~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~ 382 (433)
T 4f11_A 309 -----GPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM 382 (433)
T ss_dssp -----CCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE
T ss_pred -----CcccchhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee
Confidence 78888999999999999999998652 47899999999999999999999 899987
Q ss_pred CCeEEEEEeecCceEEEEEEecCCCccccccCCCCccCcccccCceeeCCCC
Q 043468 282 AHTYQIINLMGKSYRELGFWTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAP 333 (720)
Q Consensus 282 ~~~~~i~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 333 (720)
..+.|++++++++++||.|++..+.. . ...+.|.||++.
T Consensus 383 -~~~~I~~~~~g~~~~VG~~~~~~~~l-~-----------~~~~~i~W~~~~ 421 (433)
T 4f11_A 383 -GTIKFTQFQDSREVKVGEYNAVADTL-E-----------IINDTIRFQGSE 421 (433)
T ss_dssp -CEEEEEEEETTEEEEEEEEETTTTEE-E-----------ECTTTCCCSSSS
T ss_pred -eeEEEEEEECCceEEEEEEECCCCeE-E-----------EeCCceECCCCC
Confidence 89999999999999999998753211 1 112468899876
No 3
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=3.7e-36 Score=317.68 Aligned_cols=296 Identities=15% Similarity=0.214 Sum_probs=246.4
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTV 81 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~i 81 (720)
+|++ ++|.|||||.+|..+.+++++++.+++|+|+++. +.++ ..+|.||+.|+ ++.+++++++++||++|++
T Consensus 64 ~li~-~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vai 135 (389)
T 3o21_A 64 SQFS-RGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVY 135 (389)
T ss_dssp HHHT-TTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEE
T ss_pred HHHh-cCcEEEEeCCChhHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEE
Confidence 5775 4999999999999999999999999999998864 3333 45778888887 8899999999999999999
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCCC
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEK 161 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~~ 161 (720)
|| |+++|... .+.+.+.+++.|++|+....++.....|+.+++.+|+++++|+|++++..+++..++++++++|+.++
T Consensus 136 i~-d~~~g~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~ 213 (389)
T 3o21_A 136 LY-DTERGFSV-LQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSR 213 (389)
T ss_dssp EE-CSTTCSHH-HHHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCST
T ss_pred EE-cCcHHHHH-HHHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccC
Confidence 99 77777666 89999999999999998887754222289999999999999999999999999999999999999988
Q ss_pred CeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHHHHH
Q 043468 162 DYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSV 241 (720)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav~~~ 241 (720)
.++|+.++.+...... . .......|++++..+.+ .+|..++|.++|+++++..++..... .++.+++.+||||+++
T Consensus 214 ~~~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~-~~~~~a~~~YDAv~~~ 289 (389)
T 3o21_A 214 GYHYMLANLGFTDILL-E-RVMHGGANITGFQIVNN-ENPMVQQFIQRWVRLDEREFPEAKNA-PLKYTSALTHDAILVI 289 (389)
T ss_dssp TCEEEECCTTGGGCCC-H-HHHHTTCEEEEEESCCT-TCHHHHHHHHHHTTSCTTTSTTSSSS-CCCHHHHHHHHHHHHH
T ss_pred CeEEEEccCCcccccH-H-HHhcCCcceEEEEEecC-CChhHHHHHHHHHhccccccCCCCCC-ccchhHHHHHHHHHHH
Confidence 8999998865443221 1 12234567777765544 46999999999998876543322111 4678899999999999
Q ss_pred HHHHHHHHH----------------------HhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeecCceEEEE
Q 043468 242 ALAMEQKSE----------------------KLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELG 299 (720)
Q Consensus 242 a~al~~~~~----------------------~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~v~ 299 (720)
++|+++++. .++..|.++|++++|+|++|+++||++|++.+..++|+++.++++++||
T Consensus 290 a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG 369 (389)
T 3o21_A 290 AEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAG 369 (389)
T ss_dssp HHHHHHHHHTTCCCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEE
T ss_pred HHHHHHHHhhCcccccCCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeee
Confidence 999999873 2467899999999999999999999999998889999999999999999
Q ss_pred EEecCCCccccc
Q 043468 300 FWTYGLGFSDTI 311 (720)
Q Consensus 300 ~w~~~~~~~~~~ 311 (720)
.|++..|+....
T Consensus 370 ~w~~~~g~~~~~ 381 (389)
T 3o21_A 370 YWNEYERFVPFS 381 (389)
T ss_dssp EEETTTEEECC-
T ss_pred EEcCCCCccccC
Confidence 999999887543
No 4
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=2.2e-36 Score=318.45 Aligned_cols=293 Identities=15% Similarity=0.214 Sum_probs=229.7
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTV 81 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~i 81 (720)
+|++ ++|.+||||.+|+.+.+++++++.+++|+|++++++ ...++|+||+.|+ ++.+++++++++||++|++
T Consensus 55 ~li~-~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~~----~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vai 126 (376)
T 3hsy_A 55 SQFS-RGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPT----DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAY 126 (376)
T ss_dssp HHHH-TTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCCC----CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEE
T ss_pred HHHh-cCcEEEECCCchhHHHHHHHHhccCcCceeecCCCC----cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEE
Confidence 5775 589999999999999999999999999999998633 2356899999987 8899999999999999999
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCC----CcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcC
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLALPHF----PSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMK 157 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g 157 (720)
|| |+++|... .+.+++.+++.|++|+....++.. +. |+.+++.+|+++++|+|++++.++++..++++++++|
T Consensus 127 i~-d~~~g~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g 203 (376)
T 3hsy_A 127 LY-DSDRGLST-LQAVLDSAAEKKWQVTAINVGNINNDKKDE-TYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIG 203 (376)
T ss_dssp EE-CSTTCSHH-HHHHHHHHHHHTCEEEEEECTTCC---------------------CEEEEESCHHHHHHHHHHHHHHT
T ss_pred EE-eCchhHHH-HHHHHHHhhhcCCeEEEEEeccccccccch-hHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcc
Confidence 99 77787665 899999999999999988766432 33 9999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhH
Q 043468 158 MMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDA 237 (720)
Q Consensus 158 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yda 237 (720)
+.++.++|+.++....... .. .......+++++..+. ..+|..++|.++|+++++..++..... .|+.+++.+|||
T Consensus 204 ~~~~~~~~i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~-~~~~~~~~F~~~~~~~~~~~~~~~~~~-~~~~~aa~~YDa 279 (376)
T 3hsy_A 204 KHVKGYHYIIANLGFTDGD-LL-KIQFGGANVSGFQIVD-YDDSLVSKFIERWSTLEEKEYPGAHTA-TIKYTSALTYDA 279 (376)
T ss_dssp SSGGGCEEEECSSBTTSTT-GG-GSCCTTCEEEEEESCC-TTSHHHHHHHHHHTTSCTTTSTTCSCS-SCCHHHHHHHHH
T ss_pred cCCCCcEEEEcCCCccccc-hH-HhhcCCcCceEEEEec-CCchHHHHHHHHHHhccccccCCCCCc-ccchhHHHHHHH
Confidence 9888899999874322111 11 1111223466665443 346999999999999887644322211 578899999999
Q ss_pred HHHHHHHHHHHHH----------------------HhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeecCce
Q 043468 238 VWSVALAMEQKSE----------------------KLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSY 295 (720)
Q Consensus 238 v~~~a~al~~~~~----------------------~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~ 295 (720)
|+++++|++++++ .++..|.++|++++|+|++|+++||++|++.+..++|++++++++
T Consensus 280 v~~la~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~ 359 (376)
T 3hsy_A 280 VQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP 359 (376)
T ss_dssp HHHHHHHHHHHHHTTCCCSCCCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCc
Confidence 9999999999874 567899999999999999999999999999889999999999999
Q ss_pred EEEEEEecCCCccc
Q 043468 296 RELGFWTYGLGFSD 309 (720)
Q Consensus 296 ~~v~~w~~~~~~~~ 309 (720)
+.||.|++..|+..
T Consensus 360 ~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 360 RKIGYWSEVDKMVV 373 (376)
T ss_dssp EEEEEEETTTEEEE
T ss_pred eEEEEEcCCCCcee
Confidence 99999999988763
No 5
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=1.5e-35 Score=313.20 Aligned_cols=293 Identities=18% Similarity=0.235 Sum_probs=244.8
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTV 81 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~i 81 (720)
+|++ ++|.+||||.+|+.+.+++++++.+++|+|+++ ++.++ ..+|.||+.|+ ++.+++++++++||++|++
T Consensus 62 ~l~~-~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~i 133 (384)
T 3saj_A 62 SQFS-KGVYAIFGFYERRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVY 133 (384)
T ss_dssp HHHH-TTCSCEEECCCHHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEE
T ss_pred HHHh-cCeEEEECCCCHHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEE
Confidence 5674 589999999999999999999999999999985 33333 45788999988 7899999999999999999
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCCC
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEK 161 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~~ 161 (720)
|| |+++|... .+.+++.+++.|++|+....++.+.. |+.+++.+|+++++|+|++++.+.++..++++++++|+.++
T Consensus 134 i~-d~~~g~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~-d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~ 210 (384)
T 3saj_A 134 IY-DADRGLSV-LQRVLDTAAEKNWQVTAVNILTTTEE-GYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGI 210 (384)
T ss_dssp EE-CSTTCSHH-HHHHHHHHHHHTCEEEEEEGGGCCHH-HHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTC
T ss_pred EE-eCchhHHH-HHHHHHHhhhcCceEEEEEeccCCch-hHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCC
Confidence 99 56777555 89999999999999999886555544 99999999999999999999999999999999999999988
Q ss_pred CeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHHHHH
Q 043468 162 DYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSV 241 (720)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav~~~ 241 (720)
.++|+.++....... + ........|+.++..+. +.+|..++|.++|+++++..++..... .++.+++.+|||++++
T Consensus 211 ~~~~i~~~~~~~~~~-~-~~~~~~~~~v~~~~~~~-~~~~~~~~F~~~~~~~~~~~~p~~~~~-~~~~~aa~~YDav~~~ 286 (384)
T 3saj_A 211 GYHYILANLGFMDID-L-NKFKESGANVTGFQLVN-YTDTIPARIMQQWRTSDSRDHTRVDWK-RPKYTSALTYDGVKVM 286 (384)
T ss_dssp EEEEEESSSCGGGSC-H-HHHHHTTCCEEEEECCC-TTSHHHHHHHHHHHHHHHHC------C-CCCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCccccc-H-HHhhCCCcceEEEEeec-CCChHHHHHHHHHHhcCccccCCCCCC-ccchhHHHHHHHHHHH
Confidence 899999875432211 1 11223445677776544 346999999999999987654322221 4577899999999999
Q ss_pred HHHHHHHHH----------------------HhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeecCceEEEE
Q 043468 242 ALAMEQKSE----------------------KLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELG 299 (720)
Q Consensus 242 a~al~~~~~----------------------~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~v~ 299 (720)
++|++++++ .++..|.++|++++|+|++|+++||++|++.+..++|++++++++.+||
T Consensus 287 a~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG 366 (384)
T 3saj_A 287 AEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIG 366 (384)
T ss_dssp HHHHHHHHHTTCCCCCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEE
T ss_pred HHHHHHHHhhccceecCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeE
Confidence 999999986 5789999999999999999999999999998899999999999999999
Q ss_pred EEecCCCccc
Q 043468 300 FWTYGLGFSD 309 (720)
Q Consensus 300 ~w~~~~~~~~ 309 (720)
.|++..++..
T Consensus 367 ~W~~~~gl~~ 376 (384)
T 3saj_A 367 YWNEDDKFVP 376 (384)
T ss_dssp EEETTTEEEE
T ss_pred EEcCCCCccc
Confidence 9999887763
No 6
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=1.4e-34 Score=312.07 Aligned_cols=293 Identities=16% Similarity=0.230 Sum_probs=243.5
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCccccc-C-CCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-E-RWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIY 83 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~-~-~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~ 83 (720)
+++|.+||||.+|..+.+++++++.+++|+|+++++++.+++ . +|||+||+.|++..++.+++++++++||++|++|+
T Consensus 82 ~~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~ 161 (441)
T 1jdp_A 82 GAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVY 161 (441)
T ss_dssp TCCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred cCCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 348999999999999999999999999999999999999985 4 79999999999999999999999999999999999
Q ss_pred EcCCCccc---CcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 84 EDIDSSAT---GILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 84 ~~~~~g~~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
+|+++|.. . .+.+++.+++.|+||+....++.+.. |+.+++++|+ +++|+|++++.++++..+++++++.|+.+
T Consensus 162 ~d~~~g~~~~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~-d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~ 238 (441)
T 1jdp_A 162 SDDKLERNCYFT-LEGVHEVFQEEGLHTSIYSFDETKDL-DLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTS 238 (441)
T ss_dssp ECCSSSCHHHHH-HHHHHHHHHHHTCEEEEEEECTTSCC-CHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred EcCCcccchHHH-HHHHHHHHHhcCcEEEEEEecCCccc-CHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCC
Confidence 99988876 5 89999999999999998877765555 8999999999 99999999999999999999999999988
Q ss_pred CCeEEEEeCc----------ccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCch
Q 043468 161 KDYIWITTDA----------FTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGAL 230 (720)
Q Consensus 161 ~~~~~i~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
+.++|+.++. |... ...........+++.++..+. ...|.+++|.++|++++........ ..++.+
T Consensus 239 ~~~v~i~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~g~~~~~-~~~p~~~~F~~~~~~~~~~~~~~~~--~~~~~~ 314 (441)
T 1jdp_A 239 GDYAFFNIELFNSSSYGDGSWKRG-DKHDFEAKQAYSSLQTVTLLR-TVKPEFEKFSMEVKSSVEKQGLNME--DYVNMF 314 (441)
T ss_dssp TTCEEEEECSSCCCSTTTCTTCCS-STTHHHHHHHGGGEEEEEECC-CCCHHHHHHHHHHHHHHHTTTCCCC--SSCCHH
T ss_pred CCEEEEEEeccccccccCCCCccC-CcccHHHHHHHHhheEEeecC-CCCchHHHHHHHHHHHHhhCCCCcc--chhhhH
Confidence 8899998883 3221 111111113355565655443 3469999999999887432101100 135567
Q ss_pred hhhHhhHHHHHHHHHHHHHH-----HhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEee---cCceEEEEEEe
Q 043468 231 AVQTYDAVWSVALAMEQKSE-----KLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLM---GKSYRELGFWT 302 (720)
Q Consensus 231 ~~~~Ydav~~~a~al~~~~~-----~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~---~~~~~~v~~w~ 302 (720)
++.+||||+++++|++++.. .+++.|.++|++++|+|++|+++||++|++. ..|.|++++ ++.++.||.|+
T Consensus 315 ~~~~YdAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I~~~~~~~~g~~~~VG~~~ 393 (441)
T 1jdp_A 315 VEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGTQEVIGDYF 393 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEEEecccCCCCceEEEEEEc
Confidence 88999999999999999852 4788999999999999999999999999986 889999986 46799999999
Q ss_pred cCCC
Q 043468 303 YGLG 306 (720)
Q Consensus 303 ~~~~ 306 (720)
+..+
T Consensus 394 ~~~~ 397 (441)
T 1jdp_A 394 GKEG 397 (441)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8643
No 7
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=2.8e-35 Score=312.80 Aligned_cols=298 Identities=22% Similarity=0.303 Sum_probs=246.7
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTV 81 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~i 81 (720)
+|+ +++|.+||||.+|+.+.+++++++.+++|+|+++++++.+++ +.+|+||+.|++..++.+++++++++||++|++
T Consensus 66 ~l~-~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~i 143 (395)
T 3h6g_A 66 DQL-SLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTV 143 (395)
T ss_dssp HHH-HHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEE
T ss_pred Hhh-hcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 456 468999999999999999999999999999999999888874 468899999999999999999999999999999
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCCC
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEK 161 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~~ 161 (720)
+| |+++|... .+.+++.+++.|++|+... ++.+.. |+.+++++|+++++|+|++++.+.++..++++++++|+..+
T Consensus 144 i~-d~~~g~~~-~~~~~~~~~~~g~~v~~~~-~~~~~~-d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~ 219 (395)
T 3h6g_A 144 VY-DDSTGLIR-LQELIKAPSRYNLRLKIRQ-LPADTK-DAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTE 219 (395)
T ss_dssp EE-SSTHHHHH-THHHHTGGGTSSCEEEEEE-CCSSGG-GGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCST
T ss_pred EE-EChhHHHH-HHHHHHhhhcCCceEEEEE-eCCCch-hHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCC
Confidence 98 55666554 8889999999999998876 777655 99999999999999999999999999999999999999998
Q ss_pred CeEEEEeCcccccccccCcchhhhccc--cEEEEecCCCCChhHHHHHHHHHHHhcccCCCCC-C--CCCCCchhhhHhh
Q 043468 162 DYIWITTDAFTSLVHSINTSSISSMQG--ILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEED-N--NHEPGALAVQTYD 236 (720)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~Yd 236 (720)
.++|+.++........ . .....| +.++..+ ...+|..++|.++|++++....+... . ...++.+++.+||
T Consensus 220 ~~~~i~~~~~~~~~~~-~---~~~~~g~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YD 294 (395)
T 3h6g_A 220 YYHYIFTTLDLFALDV-E---PYRYSGVNMTGFRIL-NTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYD 294 (395)
T ss_dssp TCEEEECCTTGGGBCC-T---TTTTSCCEEEEEECS-CTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHH
T ss_pred ceEEEEecCceeEech-H---HhccCccceEEEEEe-cCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHh
Confidence 9999988643221111 1 011223 4545433 34469999999999987654322111 1 0135678999999
Q ss_pred HHHHHHHHHHHHHH--------------HhHHHHHHHHHcccccCceeeEEEec-CCcCCCCeEEEEEeecCceEEEEEE
Q 043468 237 AVWSVALAMEQKSE--------------KLNQKLLRRILLSDFDGLTGKVEFMN-QKVAPAHTYQIINLMGKSYRELGFW 301 (720)
Q Consensus 237 av~~~a~al~~~~~--------------~~~~~l~~~l~~~~~~g~~G~v~f~~-~g~~~~~~~~i~~~~~~~~~~v~~w 301 (720)
|++++++|++++++ .+++.+.++|++++|+|++|+++||+ +|++.+..+.|+++++++++.+|.|
T Consensus 295 av~~~a~Al~~a~~~~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w 374 (395)
T 3h6g_A 295 AVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTW 374 (395)
T ss_dssp HHHHHHHHHHTCTTCCCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHhhhcCCCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEE
Confidence 99999999999976 58899999999999999999999998 9999988999999999999999999
Q ss_pred ecCCCcccc
Q 043468 302 TYGLGFSDT 310 (720)
Q Consensus 302 ~~~~~~~~~ 310 (720)
++..|+...
T Consensus 375 ~~~~g~~~~ 383 (395)
T 3h6g_A 375 DPASGLNMT 383 (395)
T ss_dssp ETTTEECCC
T ss_pred cCCCCcccc
Confidence 999887643
No 8
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=4.7e-35 Score=310.70 Aligned_cols=297 Identities=18% Similarity=0.323 Sum_probs=237.9
Q ss_pred cccccCCeEEEECCCCChh-hHHHHHhhccCCCcEEecccCCcccccCCCCeE--EEeecChHHHHHHHHHHHHhCCCeE
Q 043468 2 DLMDSQKVEAILGPQTSEE-TSSVAEIASKKQIPVLSFADATPNWATERWPFL--LQASQNQLAQMKAIAAIVQSWEWHQ 78 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~-~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~--fr~~p~~~~~~~~~~~~l~~~~~~~ 78 (720)
+|+ +++|.+||||.+|+. +.+++++++.+++|+|++++++. ....+|++ ||+.|++..++++++++++++||++
T Consensus 65 ~l~-~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~ 141 (393)
T 3om0_A 65 QIL-PKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPS 141 (393)
T ss_dssp HHG-GGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCC
T ss_pred HHH-hcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCcC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcE
Confidence 355 578999999999954 57999999999999999987642 23567888 9999999999999999999999999
Q ss_pred EEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468 79 VTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKM 158 (720)
Q Consensus 79 v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~ 158 (720)
|++||+|+++|. . .+.+.+.+.+.|++|.... ++ ++. |+.+++.+|+++++|+|++++.++++..++++++++|+
T Consensus 142 vaii~~~~~~g~-~-l~~~~~~~~~~g~~v~~~~-~~-~~~-d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~ 216 (393)
T 3om0_A 142 ASLICAKAECLL-R-LEELVRGFLISKETLSVRM-LD-DSR-DPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGM 216 (393)
T ss_dssp EEEEESSTTHHH-H-THHHHHHHHHSSSCEEEEE-CC--CC-CSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTT
T ss_pred EEEEEeCchHHH-H-HHHHHHhhhccCCeEEEEe-cC-CCC-CHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCc
Confidence 999999888764 3 3444456778899987654 43 444 99999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHH
Q 043468 159 MEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAV 238 (720)
Q Consensus 159 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav 238 (720)
.++.++|+.++....... +.. ......|+.++..+. ..+|..++|.++|+++|+... .......|+.+++.+|||+
T Consensus 217 ~~~~~~~i~~~~~~~~~~-l~~-~~~~~~~~~g~~~~~-~~~~~~~~f~~~~~~~~~~~~-~~~~~~~p~~~a~~~YDAv 292 (393)
T 3om0_A 217 TSAFYKYILTTMDFPILH-LDG-IVEDSSNILGFSMFN-TSHPFYPEFVRSLNMSWRENC-EASTYPGPALSAALMFDAV 292 (393)
T ss_dssp TSTTCEEEECCTTGGGCC-CTT-TCCSSCSEEEEECCC-TTSTTHHHHHHHHHHHHTTTS-CGGGCCSCCHHHHHHHHHH
T ss_pred ccCCeEEEEecccccccc-hhh-hhccCCcEEEEEEec-CCccHHHHHHHHHHHHhhhhc-cCCCCCCCchHHHHHHhHH
Confidence 988899998876543321 111 123456777776544 346899999999999997421 1111115778999999999
Q ss_pred HHHHHHHHHHHH-----------------HhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeecCceEEEEEE
Q 043468 239 WSVALAMEQKSE-----------------KLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFW 301 (720)
Q Consensus 239 ~~~a~al~~~~~-----------------~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~v~~w 301 (720)
+++++|+++++. .++..+.++|++++|+|++|+++||++|++.+..++|+++++++++.||.|
T Consensus 293 ~~la~Al~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w 372 (393)
T 3om0_A 293 HVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVW 372 (393)
T ss_dssp HHHHHHHHHHTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHhhcccCcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeE
Confidence 999999999974 689999999999999999999999999999889999999999999999999
Q ss_pred ecCCCcccc
Q 043468 302 TYGLGFSDT 310 (720)
Q Consensus 302 ~~~~~~~~~ 310 (720)
++..|+...
T Consensus 373 ~~~~gl~~~ 381 (393)
T 3om0_A 373 YSNRTLAMN 381 (393)
T ss_dssp ECC------
T ss_pred cCCCCcccc
Confidence 998877643
No 9
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=4.1e-35 Score=315.93 Aligned_cols=317 Identities=14% Similarity=0.222 Sum_probs=255.6
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCccccc-CCCCeEEEeecChHHHHHHHHHHHHhCCCeEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-ERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVT 80 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ 80 (720)
+++.+++|.+||||.+|+.+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.++++++++++|++|+
T Consensus 71 ~~l~~~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ 150 (435)
T 1dp4_A 71 DLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQA 150 (435)
T ss_dssp HHHHHHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEE
T ss_pred HHHHhcCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEE
Confidence 3555789999999999999999999999999999999999999985 469999999999999999999999999999999
Q ss_pred EE------EEcCCCcccCcHHHHHHHHHH-cCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHH
Q 043468 81 VI------YEDIDSSATGILPHLSDALRE-AGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKA 153 (720)
Q Consensus 81 ii------~~~~~~g~~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a 153 (720)
+| ++++++| .. .+.+.+.+++ .|++|+....++.+.. |+.+++++|++ ++|+|++++.+.++..+++++
T Consensus 151 ii~~~d~~~~~~~~g-~~-~~~~~~~~~~~~g~~v~~~~~~~~~~~-d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a 226 (435)
T 1dp4_A 151 LVLYADRLGDDRPCF-FI-VEGLYMRVRERLNITVNHQEFVEGDPD-HYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLA 226 (435)
T ss_dssp EEEEECCSSSCCHHH-HH-HHHHHHHHHHHHCCEEEEEEECTTCGG-GHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHH
T ss_pred EEEEccCCCCcchHH-HH-HHHHHHHHHhhcCeEEEEEEEecCchh-hHHHHHHHHHh-hCceEEEecChHHHHHHHHHH
Confidence 99 5555555 45 5778888888 9999998887654444 99999999998 999999999999999999999
Q ss_pred HHcCCCCCCeEEEEeCccccccc---------------ccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccC
Q 043468 154 NKMKMMEKDYIWITTDAFTSLVH---------------SINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEY 218 (720)
Q Consensus 154 ~~~g~~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 218 (720)
+++|+.+++++|+.++.+..... .......++.+|++.+.... +.+|..++|.++|.++++...
T Consensus 227 ~~~g~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~ 305 (435)
T 1dp4_A 227 LNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKE-PDNPEYLEFLKQLKLLADKKF 305 (435)
T ss_dssp HHTTCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECC-CCSHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCC-CCChhHHHHHHHHHHHhcCCC
Confidence 99999876789999987754310 00112345678888777643 346899999999988775311
Q ss_pred CCCCC-CCCCCchhhhHhhHHHHHHHHHHHHH-----HHhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEe--
Q 043468 219 PEEDN-NHEPGALAVQTYDAVWSVALAMEQKS-----EKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINL-- 290 (720)
Q Consensus 219 ~~~~~-~~~~~~~~~~~Ydav~~~a~al~~~~-----~~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~-- 290 (720)
.|.. ...++.+++.+||||+++++|++++. ..+++.|.++|++++|+|++|+++||++|++. ..+.|+++
T Consensus 306 -~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~~-~~~~i~~~~~ 383 (435)
T 1dp4_A 306 -NFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRD-TDFSLWDMDP 383 (435)
T ss_dssp -CCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTTSBBC-CCEEEEEECT
T ss_pred -CcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhCceeeccceeEEECCCCCcc-ceeEEEEecC
Confidence 1110 00256788999999999999999983 35788999999999999999999999999997 78999999
Q ss_pred ecCceEEEEEEecCCC-ccccccCCCCccCcccccCceeeCCCCCCCCcc
Q 043468 291 MGKSYRELGFWTYGLG-FSDTIIDPKYNCSSMKDLGQVFWPGAPWYTPKG 339 (720)
Q Consensus 291 ~~~~~~~v~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~~ 339 (720)
.+++++.||.|++..+ +.. ...+.|.||++ .+|.+
T Consensus 384 ~~g~~~~vg~~~~~~~~l~~------------~~~~~i~W~~~--~~P~~ 419 (435)
T 1dp4_A 384 ETGAFRVVLNYNGTSQELMA------------VSEHKLYWPLG--YPPPD 419 (435)
T ss_dssp TTCCEEEEEEECTTTCCEEE------------STTCCCCCTTS--SCCCS
T ss_pred CCCcEEEEEEecCCCceEEE------------cCCceeeCCCC--CCCCC
Confidence 5678999999998653 110 02256899876 34443
No 10
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=3.5e-34 Score=304.14 Aligned_cols=290 Identities=19% Similarity=0.247 Sum_probs=243.8
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|.|||||.+|..+.+++++++.++||+++++++.+. ..+|.+++.|.. ++++++++++++|++|++||++
T Consensus 67 ~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~~~~----~~~~~~~~~~~~---~~a~~~l~~~~~w~~vaii~~~ 139 (389)
T 4gpa_A 67 SRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEG----ESQFVLQLRPSL---RGALLSLLDHYEWNCFVFLYDT 139 (389)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCSS----CCSSEEECSCCC---HHHHHHHHHHTTCCEEEEEECS
T ss_pred hcCCEEEEeCCccHHHHHHHHHHHHhCCCceeccccccc----cccCCccccCCH---HHHHHHHHHHcCCcEEEEEEec
Confidence 589999999999999999999999999999998766543 234566666654 4789999999999999999988
Q ss_pred CCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEE
Q 043468 86 IDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIW 165 (720)
Q Consensus 86 ~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~~~~~~ 165 (720)
+.++ .. .+.+.+.+++.|++|+....++.... ++.+++.+++++++++|++.+..+++..++++|+++|+.++.+.|
T Consensus 140 d~~~-~~-~~~~~~~~~~~g~~v~~~~~~~~~~~-d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~ 216 (389)
T 4gpa_A 140 DRGY-SI-LQAIMEKAGQNGWHVSAICVENFNDV-SYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHY 216 (389)
T ss_dssp TTCS-HH-HHHHHHHHHTTTCEEEEEECTTCCHH-HHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEE
T ss_pred chhh-HH-HHHHHHHHHhcCceEEEEeecCCcch-hHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEE
Confidence 7765 44 78888999999999999888776665 999999999999999999999999999999999999999999999
Q ss_pred EEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHHHHHHHHH
Q 043468 166 ITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSVALAM 245 (720)
Q Consensus 166 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav~~~a~al 245 (720)
+.++.+...... ........|+.++....+ .+|..++|.++|++.+...... ....|+.+++.+||||+++|+|+
T Consensus 217 i~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~~~a~~YDAV~~~A~Al 291 (389)
T 4gpa_A 217 IIANLGFKDISL--ERFIHGGANVTGFQLVDF-NTPMVTKLMDRWKKLDQREYPG--SETPPKYTSALTYDGVLVMAETF 291 (389)
T ss_dssp EECSSBGGGSCC--HHHHHHBCEEEEEECSCT-TSHHHHHHHHHHTTSCTTTSTT--TTSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCccccchhh--hhhhhcccceEEEEeecC-CChHHHHHHHHHHHHhhhhccc--CCCChhHHHHHHHHHHHHHHHHH
Confidence 999887654322 223455667777765544 4699999999998766543221 22268889999999999999999
Q ss_pred HHHHHH----------------------hHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeecCceEEEEEEec
Q 043468 246 EQKSEK----------------------LNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTY 303 (720)
Q Consensus 246 ~~~~~~----------------------~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~v~~w~~ 303 (720)
+++... +|..|.++|++++|+|++|+|.||++|+|.+..|+|++++++++++||.|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~ 371 (389)
T 4gpa_A 292 RSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWND 371 (389)
T ss_dssp HHHHHTTCCCCCTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEET
T ss_pred HHHHhhcccccccCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEEC
Confidence 998752 4678999999999999999999999999988899999999999999999999
Q ss_pred CCCcccc
Q 043468 304 GLGFSDT 310 (720)
Q Consensus 304 ~~~~~~~ 310 (720)
..|+...
T Consensus 372 ~~gl~~~ 378 (389)
T 4gpa_A 372 MDKLVLI 378 (389)
T ss_dssp TTEEEEC
T ss_pred CCCeEEC
Confidence 9887654
No 11
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=1.1e-33 Score=312.80 Aligned_cols=314 Identities=19% Similarity=0.307 Sum_probs=252.3
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCccccc-CCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-ERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~ 84 (720)
+++|.|||||.+|+.+.+++++++.+++|+|+++++++.|++ .+|||+||+.|++..++.+++++++++||++|++|++
T Consensus 115 ~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~ 194 (555)
T 2e4u_A 115 PLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVAS 194 (555)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 678999999999999999999999999999999999999985 5799999999999999999999999999999999999
Q ss_pred cCCCcccCcHHHHHHHHHHcCcEEEEEEecCCC-CcccHHHHHHHhhc-CCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC
Q 043468 85 DIDSSATGILPHLSDALREAGAEIIHVLALPHF-PSSRLSEELEKLKG-GQCRVFVVHLSLELAVHLFEKANKMKMMEKD 162 (720)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~i~~-~~~~vvil~~~~~~~~~~l~~a~~~g~~~~~ 162 (720)
|+++|... .+.+++.+++.|++|+..+.++.. ...++.+++.++++ +++|+||+++.+.++..++++++++|+ +
T Consensus 195 d~~~g~~~-~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~~~~g~---~ 270 (555)
T 2e4u_A 195 EGDYGETG-IEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNA---S 270 (555)
T ss_dssp SSTTHHHH-HHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTC---C
T ss_pred eChHHHHH-HHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcCHHHHHHHHHHHHHhcC---C
Confidence 99998777 899999999999999999888752 22289999999964 799999999999999999999999998 6
Q ss_pred eEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHH---------------HHHHHHHhcccCC-------C
Q 043468 163 YIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDF---------------CKRFRKRFGAEYP-------E 220 (720)
Q Consensus 163 ~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f---------------~~~~~~~~~~~~~-------~ 220 (720)
++|++++.|....... ......++|++++..+... .|.+++| .+.|+++++-... .
T Consensus 271 ~~~i~s~~~~~~~~~~-~~~~~~~~G~l~~~~~~~~-ipgf~~f~~~~~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~~ 348 (555)
T 2e4u_A 271 FTWVASDGWGAQESIV-KGSEHVAYGAITLELASHP-VRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQV 348 (555)
T ss_dssp CEEEECTTTTTCGGGT-TTCHHHHTTCEEEEECCCC-CHHHHHHHHTCCTTTCTTCTTHHHHHHHHTTCCCC------CC
T ss_pred eEEEEeccccccchhh-ccchhhcceEEEEEeccCC-CCcHHHHHhhCCcccCCCCHHHHHHHHHHcCCCCCCCCccCCC
Confidence 7999999887542221 1224578899988765322 2444443 3345555542211 1
Q ss_pred CCCC-------CCCCchhhhHhhHHHHHHHHHHHHHH---------------HhHHHHHH-HHHccccc------Cceee
Q 043468 221 EDNN-------HEPGALAVQTYDAVWSVALAMEQKSE---------------KLNQKLLR-RILLSDFD------GLTGK 271 (720)
Q Consensus 221 ~~~~-------~~~~~~~~~~Ydav~~~a~al~~~~~---------------~~~~~l~~-~l~~~~~~------g~~G~ 271 (720)
|.++ -.+..+++.+||||+++|+||++++. .+++.|.+ +|++++|. |++|.
T Consensus 349 C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~ 428 (555)
T 2e4u_A 349 CDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQFTAPFNPNKGADS 428 (555)
T ss_dssp CCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGGTSCCHHHHHHHHTTCEEECCSSSCCSSSCC
T ss_pred CCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCCCccccccCCCCcccccHHhHhceeecccccccCCCCC
Confidence 1111 01456788999999999999999875 35678988 99999999 99996
Q ss_pred -EEEecCCcCCCCeEEEEEee--cC--ceEEEEEEecCCCccccccCCCCccCcccccCceeeCCCCCCCCcccccC
Q 043468 272 -VEFMNQKVAPAHTYQIINLM--GK--SYRELGFWTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYTPKGWTLP 343 (720)
Q Consensus 272 -v~f~~~g~~~~~~~~i~~~~--~~--~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~~~~~~ 343 (720)
+.||++|++. ..|+|++++ ++ .+++||.|+. .+.+ +...|.|+. .++|.+.|..
T Consensus 429 ~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~--~l~i-------------~~~~I~W~~--~~~P~S~CS~ 487 (555)
T 2e4u_A 429 IVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE--TLSL-------------DVDSIHWSR--NSVPTSQCSD 487 (555)
T ss_dssp EEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS--SEEC-------------CGGGCCCTT--SSCCCCCSSC
T ss_pred eEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc--eEEE-------------eccccccCC--CCCcceeeCC
Confidence 9999999986 889999996 33 5889999985 2221 124588977 5789988853
No 12
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=4.1e-33 Score=294.73 Aligned_cols=264 Identities=22% Similarity=0.294 Sum_probs=218.9
Q ss_pred cccccCCeEEEEC-----CCCChhhHHHHHhhccCCCcEEecccCCcccc-cCCCCeEEEeecChHHHHHHHHHHHHhCC
Q 043468 2 DLMDSQKVEAILG-----PQTSEETSSVAEIASKKQIPVLSFADATPNWA-TERWPFLLQASQNQLAQMKAIAAIVQSWE 75 (720)
Q Consensus 2 ~Li~~~~v~aiiG-----p~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~-~~~~~~~fr~~p~~~~~~~~~~~~l~~~~ 75 (720)
+|++ ++|.+|+| |.+|..+.+++++++.+++|+|+++++++.++ ...|||+||+.|++..++.+++++++++|
T Consensus 60 ~Li~-~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~g 138 (384)
T 3qek_A 60 DLIS-SQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFN 138 (384)
T ss_dssp HTGG-GTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTT
T ss_pred HHHH-cCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcC
Confidence 4786 49999999 67888899999999999999999999999998 46789999999999999999999999999
Q ss_pred CeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEE---------------------EEEecCCCCcccHHHHHHHhhcCCC
Q 043468 76 WHQVTVIYEDIDSSATGILPHLSDALREAGAEII---------------------HVLALPHFPSSRLSEELEKLKGGQC 134 (720)
Q Consensus 76 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~---------------------~~~~~~~~~~~d~~~~l~~i~~~~~ 134 (720)
|++|++||+|+++|... .+.+++.+++.|++++ ....+..+.. |+.+++.+++++++
T Consensus 139 w~~v~ii~~d~~~G~~~-~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~-d~~~~l~~i~~~~~ 216 (384)
T 3qek_A 139 WNHVILIVSDDHEGRAA-QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTK-NLTALLLEAKELEA 216 (384)
T ss_dssp CCEEEEEEESSHHHHHH-HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCS-CCHHHHHHHHTSSC
T ss_pred CeEEEEEEEcCcccHHH-HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchh-hHHHHHHHHHhcCC
Confidence 99999999999888766 8999999999998642 1222334444 99999999999999
Q ss_pred eEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHh
Q 043468 135 RVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRF 214 (720)
Q Consensus 135 ~vvil~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~ 214 (720)
|+|++++.++++..++++++++|+.+++++|+.++.+.... .......|++++..+.+.
T Consensus 217 ~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~-----~~~~~~~g~lg~~~~~~~---------------- 275 (384)
T 3qek_A 217 RVIILSASEDDATAVYKSAAMLDMTGAGYVWLVGEREISGS-----ALRYAPDGIIGLQLINGK---------------- 275 (384)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCSSTTCEEECCSGGGSGG-----GGSSCCTTCEEEEETTTT----------------
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCccCCeEEEEeccccccc-----cccccCCccEEEEEcCCC----------------
Confidence 99999999999999999999999998789999999875431 123567899988865432
Q ss_pred cccCCCCCCCCCCCchhhhHhhHHHHHHHHHHHHHH------------------HhHHHHHHHHHcccc-cCceeeEEEe
Q 043468 215 GAEYPEEDNNHEPGALAVQTYDAVWSVALAMEQKSE------------------KLNQKLLRRILLSDF-DGLTGKVEFM 275 (720)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Ydav~~~a~al~~~~~------------------~~~~~l~~~l~~~~~-~g~~G~v~f~ 275 (720)
..++.+||||+++++|++++.. ..+..|.+++.+++| +|++|++.||
T Consensus 276 --------------~~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd 341 (384)
T 3qek_A 276 --------------NESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFN 341 (384)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBC
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEEC
Confidence 1268899999999999998852 256789999999998 9999999999
Q ss_pred cCCcCCCCeEEEEEeecCceEEEEEEec
Q 043468 276 NQKVAPAHTYQIINLMGKSYRELGFWTY 303 (720)
Q Consensus 276 ~~g~~~~~~~~i~~~~~~~~~~v~~w~~ 303 (720)
++|++.+..|+|++++++++++||.|+.
T Consensus 342 ~~G~~~~~~~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 342 EDGDRKFAQYSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp TTSCBCSCCEEEEEEETTEEEEEEEECS
T ss_pred CCCCCCcccEEEEEEcCCceEEEEEEeC
Confidence 9999977999999999999999999994
No 13
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=8.5e-33 Score=299.00 Aligned_cols=289 Identities=18% Similarity=0.308 Sum_probs=233.9
Q ss_pred CCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCccccc-CCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 7 QKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-ERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 7 ~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
++|.|||||.+|+.+.+++++++.+++|+|+++++++.+++ .+|||+||+.|++..++.+++++++++||+||++|++|
T Consensus 115 ~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~d 194 (479)
T 3sm9_A 115 LLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASE 194 (479)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 57999999999999999999999999999999999999995 57999999999999999999999999999999999999
Q ss_pred CCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCc-ccHHHHH-HHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCe
Q 043468 86 IDSSATGILPHLSDALREAGAEIIHVLALPHFPS-SRLSEEL-EKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDY 163 (720)
Q Consensus 86 ~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~d~~~~l-~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~~~~ 163 (720)
+++|... .+.+++.+++.|+||+..+.++.... .|+.+++ ++++++++|+|+++++.+++..++++++++|+. +
T Consensus 195 d~~G~~~-~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~---~ 270 (479)
T 3sm9_A 195 GDYGETG-IEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANAS---F 270 (479)
T ss_dssp SHHHHHH-HHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCC---C
T ss_pred chhhHHH-HHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHHhCCE---E
Confidence 9988777 99999999999999999998876432 2889998 778999999999999999999999999999995 6
Q ss_pred EEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHH---------------HHHhcccCC---CCCCCC
Q 043468 164 IWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRF---------------RKRFGAEYP---EEDNNH 225 (720)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~---------------~~~~~~~~~---~~~~~~ 225 (720)
+|++++.|........ ......+|++++..+..+ .|.+++|.+.. ...++=... ....+|
T Consensus 271 ~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~-ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C 348 (479)
T 3sm9_A 271 TWVASDGWGAQESIIK-GSEHVAYGAITLELASQP-VRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVC 348 (479)
T ss_dssp EEEECTTTTTCHHHHT-TCTTTTTTCEEEEECCCC-CHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCBCCC---CSCBC
T ss_pred EEEEechhhcCccccc-cccccCceEEEEEeccCC-CcchhhHhhccCcCcCCCCHHHHHHHHHHcCCCCCCCcccccCC
Confidence 9999999976421111 123567899999876554 48887776542 222210000 000112
Q ss_pred C-----------CCchhhhHhhHHHHHHHHHHHHHH---------------HhHHHHH-HHHHcccccCc------ee-e
Q 043468 226 E-----------PGALAVQTYDAVWSVALAMEQKSE---------------KLNQKLL-RRILLSDFDGL------TG-K 271 (720)
Q Consensus 226 ~-----------~~~~~~~~Ydav~~~a~al~~~~~---------------~~~~~l~-~~l~~~~~~g~------~G-~ 271 (720)
. ........||||+++|+||+++.. .+++.|. .+|++++|.+. .| .
T Consensus 349 ~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~ 428 (479)
T 3sm9_A 349 DKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSI 428 (479)
T ss_dssp CTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCHHHHSCCHHHHHHHTGGGCCEECTTC-----CCE
T ss_pred CCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCCcChHHHHHHHhcceeeccccCccccCCCe
Confidence 2 123346899999999999998853 1567899 89999999987 45 8
Q ss_pred EEEecCCcCCCCeEEEEEeec--C--ceEEEEEEe
Q 043468 272 VEFMNQKVAPAHTYQIINLMG--K--SYRELGFWT 302 (720)
Q Consensus 272 v~f~~~g~~~~~~~~i~~~~~--~--~~~~v~~w~ 302 (720)
+.||++|+.. ..|+|++|+. + .+++||.|+
T Consensus 429 v~fd~~G~~~-~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 429 VKFDTFGDGM-GRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp ECCCTTCBCC-CCEEEEEEEESSSCEEEEEEEEES
T ss_pred EEECCCCCcc-cceEEEEEEECCCcEEEEEEEEEe
Confidence 9999999996 8999999973 2 478899998
No 14
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=7.7e-32 Score=292.80 Aligned_cols=294 Identities=18% Similarity=0.320 Sum_probs=236.9
Q ss_pred ccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCccccc-CCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEE
Q 043468 5 DSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-ERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIY 83 (720)
Q Consensus 5 ~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~ 83 (720)
.+++|.|||||.+|+.+.+++++++.+++|+|+++++++.+++ .++||+||+.|++..++.+++++++++||+||++|+
T Consensus 125 ~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~ 204 (496)
T 3ks9_A 125 TKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVH 204 (496)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEE
Confidence 4689999999999999999999999999999999999999995 579999999999999999999999999999999999
Q ss_pred EcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCc-ccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 84 EDIDSSATGILPHLSDALREAGAEIIHVLALPHFPS-SRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 84 ~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
+|+++|... .+.+++.+++.|+||+..+.++.... .|+.+++++|+++ ++++|++++.+.++..+++++++.|+.+
T Consensus 205 ~dd~~G~~~-~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~ 283 (496)
T 3ks9_A 205 TEGNYGESG-MDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG 283 (496)
T ss_dssp ESSHHHHHH-HHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS
T ss_pred eccHHHHHH-HHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHHHHhCCCC
Confidence 999998777 99999999999999999888764322 2899999999985 8999999999999999999999999975
Q ss_pred CCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHH----------HHhcccCCCC---------
Q 043468 161 KDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFR----------KRFGAEYPEE--------- 221 (720)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~----------~~~~~~~~~~--------- 221 (720)
.+.|++++.|........ ......+|+++++.+..+ .|.+++|.+... ++++...+.|
T Consensus 284 -k~~~i~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~-ipgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~ 360 (496)
T 3ks9_A 284 -EFSLIGSDGWADRDEVIE-GYEVEANGGITIKLQSPE-VRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLEN 360 (496)
T ss_dssp -CCEEEECTTTTTCHHHHT-TCHHHHTTCEEEEECCCC-CHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----
T ss_pred -cEEEEEechhcccccccc-ccccccCceEEEeccCCc-CcchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCcccc
Confidence 368999998875422222 234678899999866554 588888865421 1221111111
Q ss_pred ---CCCCCC----------CchhhhHhhHHHHHHHHHHHHHH---------------HhHHHHHHHHHcccccCcee-eE
Q 043468 222 ---DNNHEP----------GALAVQTYDAVWSVALAMEQKSE---------------KLNQKLLRRILLSDFDGLTG-KV 272 (720)
Q Consensus 222 ---~~~~~~----------~~~~~~~Ydav~~~a~al~~~~~---------------~~~~~l~~~l~~~~~~g~~G-~v 272 (720)
...|.. .......|+||+++|+|||++.. .+++.|..+|++++|.+..| .+
T Consensus 361 ~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~f~~~~g~~v 440 (496)
T 3ks9_A 361 PNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEV 440 (496)
T ss_dssp CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEE
T ss_pred ccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCCCCCHHHHHHHHHhcCCcCCCCCEE
Confidence 012321 11224699999999999998853 14678999999999999989 79
Q ss_pred EEecCCcCCCCeEEEEEeec---C--ceEEEEEEec
Q 043468 273 EFMNQKVAPAHTYQIINLMG---K--SYRELGFWTY 303 (720)
Q Consensus 273 ~f~~~g~~~~~~~~i~~~~~---~--~~~~v~~w~~ 303 (720)
.||++|+.. ..|+|++|+. + .+++||.|+.
T Consensus 441 ~fd~~gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~~ 475 (496)
T 3ks9_A 441 WFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWHE 475 (496)
T ss_dssp ECCTTSCCC-CEEEEEEEEECC--CEEEEEEEEEET
T ss_pred EECCCCCcc-ceEEEEEEEECCCCCEEEEEEEEEeC
Confidence 999999997 8999999973 2 4788999984
No 15
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.98 E-value=1.3e-31 Score=281.74 Aligned_cols=285 Identities=18% Similarity=0.203 Sum_probs=246.5
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHH-HhCCCeEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIV-QSWEWHQVT 80 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l-~~~~~~~v~ 80 (720)
+|+++++|++||||.+|..+.+++++++..++|+|++.++++.++. .++|+||+.|++..++.++++++ +++||++++
T Consensus 75 ~l~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~ia 153 (366)
T 3td9_A 75 RAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVV 153 (366)
T ss_dssp HHHHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEE
T ss_pred HHhccCCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 5777778999999999999999999999999999999988887764 57999999999999999999998 557999999
Q ss_pred EEEEc-CCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 81 VIYED-IDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 81 ii~~~-~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
+||.. ++++.. ..+.+++.+++.|++++... ++.+.. |+.+.++++++.++|+|++.+...++..+++++++.|+
T Consensus 154 ii~~~~~~~~~~-~~~~~~~~~~~~G~~v~~~~-~~~~~~-d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~- 229 (366)
T 3td9_A 154 VFTDVEQDYSVG-LSNFFINKFTELGGQVKRVF-FRSGDQ-DFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGF- 229 (366)
T ss_dssp EEEETTCHHHHH-HHHHHHHHHHHTTCEEEEEE-ECTTCC-CCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTC-
T ss_pred EEEeCCCcHHHH-HHHHHHHHHHHCCCEEEEEE-eCCCCc-cHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCC-
Confidence 99974 445544 37899999999999999888 877766 99999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCcccccccccCcchhhhccccEEEEecCCCC--ChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhH
Q 043468 160 EKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPED--KPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDA 237 (720)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yda 237 (720)
+..|++++.+... ..........+|++....+.+.. +|..++|.++|+++++. .|+.+++.+||+
T Consensus 230 --~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~---------~p~~~~~~~yda 296 (366)
T 3td9_A 230 --TGYILAGDGADAP--ELIEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYGK---------EPAALNALGYDA 296 (366)
T ss_dssp --CSEEEECGGGCST--HHHHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHSS---------CCCHHHHHHHHH
T ss_pred --CceEEeeCCcCCH--HHHHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHCC---------CCchhHHHHHHH
Confidence 4567877665432 11122345778988776554332 68999999999999987 788999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHccc-ccCceeeEEEecCCcCCCCeEEEEEeecCceEEEEEEecCC
Q 043468 238 VWSVALAMEQKSEKLNQKLLRRILLSD-FDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYGL 305 (720)
Q Consensus 238 v~~~a~al~~~~~~~~~~l~~~l~~~~-~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~v~~w~~~~ 305 (720)
++++++|++++++.+++.+.++|++++ |+|++|+++|+++|++. ..+.|+++++|+++.++.|++..
T Consensus 297 ~~~~~~al~~ag~~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~~ 364 (366)
T 3td9_A 297 YMVLLDAIERAGSFDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPDD 364 (366)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecChhh
Confidence 999999999999999999999999997 99999999999999987 55899999999999999998753
No 16
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.98 E-value=1.6e-31 Score=280.92 Aligned_cols=283 Identities=12% Similarity=0.160 Sum_probs=240.7
Q ss_pred CcccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEE
Q 043468 1 MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVT 80 (720)
Q Consensus 1 ~~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ 80 (720)
++|+++++|.+||||.+|+.+.++++++++.++|+|+++++++.++.. ++|+||+.|++..+..+++++++..+|++++
T Consensus 65 ~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~va 143 (371)
T 4f06_A 65 QELIVKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVA 143 (371)
T ss_dssp HHHHHTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhcCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEE
Confidence 478989999999999999999999999999999999999999888753 5899999999999999999999999999999
Q ss_pred EEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc-CHHHHHHHHHHHHHcCCC
Q 043468 81 VIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL-SLELAVHLFEKANKMKMM 159 (720)
Q Consensus 81 ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~-~~~~~~~~l~~a~~~g~~ 159 (720)
++++|+++|... .+.+++.+++.|++|+..+.++.++. |+.+++.+|+++++|+|++.. .+.+...+++++++.|+.
T Consensus 144 ii~~~~~~g~~~-~~~~~~~~~~~g~~vv~~~~~~~~~~-d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~ 221 (371)
T 4f06_A 144 IAVSDYGPGIDA-ETAFKKTFEAEGGKVVEAVRMPLSTT-DFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLK 221 (371)
T ss_dssp EEEESSHHHHHH-HHHHHHHHHHTTCEEEEEEEECTTCC-CCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTT
T ss_pred EEcCCcccchhH-HHHHHHHHHhcCCceEEEEecCcccc-cHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhh
Confidence 999999988665 89999999999999999999999887 999999999999999998776 467888999999999997
Q ss_pred CCCeEEEEeCcccccccccCcchhhhccccEEEEecCC-CCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHH
Q 043468 160 EKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFP-EDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAV 238 (720)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav 238 (720)
.....++.++....... + .......+|++....+.. ..+|..++|.++|+++++... .|+.++..+||++
T Consensus 222 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~-------~~~~~a~~~Yda~ 292 (371)
T 4f06_A 222 AGGVKLMSTGDVVTEPD-L-PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLD-------EVTMTSVAAYDGA 292 (371)
T ss_dssp TTTCEEEEEGGGGCGGG-H-HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGG-------GCCHHHHHHHHHH
T ss_pred ccCcEEEEecccCCHHH-H-HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCC-------CccchHHHHHHHH
Confidence 66666666554332211 1 123456778886665544 347999999999999886421 5778899999999
Q ss_pred HHHHHHHHH-HHHHhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEee--cCce
Q 043468 239 WSVALAMEQ-KSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLM--GKSY 295 (720)
Q Consensus 239 ~~~a~al~~-~~~~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~--~~~~ 295 (720)
+++++|+++ +++.|+++++++|++++|+|++|+++||++++.....+.|.+++ +|++
T Consensus 293 ~~l~~Ai~~~ag~~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~ 352 (371)
T 4f06_A 293 RLIYKMIEATSGKSDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKL 352 (371)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEE
Confidence 999999986 56779999999999999999999999998877766778888887 5654
No 17
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.98 E-value=2.7e-31 Score=280.16 Aligned_cols=277 Identities=13% Similarity=0.176 Sum_probs=241.8
Q ss_pred CcccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCccccc-CCCCeEEEeecChHHHHHHHHHHHHhCCCeEE
Q 043468 1 MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-ERWPFLLQASQNQLAQMKAIAAIVQSWEWHQV 79 (720)
Q Consensus 1 ~~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v 79 (720)
++|+++++|++||||.+|..+.+++++++.+++|+|+++++++.++. ..+||+||+.|++..+++++++++.+.||++|
T Consensus 64 ~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~v 143 (375)
T 3i09_A 64 REWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTW 143 (375)
T ss_dssp HHHHHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhhCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceE
Confidence 36777799999999999999999999999999999999988888884 57899999999999999999999988999999
Q ss_pred EEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 80 TVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 80 ~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
++|+.++.+|... .+.+++.+++.|++++....++.+.. |+.+.+.+++++++|+|++.+.+.++..+++++++.|+.
T Consensus 144 aii~~~~~~g~~~-~~~~~~~~~~~G~~v~~~~~~~~~~~-d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~ 221 (375)
T 3i09_A 144 FFLTADYAFGKAL-EKNTADVVKANGGKVLGEVRHPLSAS-DFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGIT 221 (375)
T ss_dssp EEEEESSHHHHHH-HHHHHHHHHHTTCEEEEEEEECTTCS-CCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGG
T ss_pred EEEecccHHHHHH-HHHHHHHHHHcCCEEeeeeeCCCCCc-cHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCC
Confidence 9999988877655 89999999999999999988887776 999999999999999999999999999999999999997
Q ss_pred CCCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHHH
Q 043468 160 EKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVW 239 (720)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav~ 239 (720)
.+. .+++.+.+...... ......+|++...++....+|..++|.++|+++++. .|+.+++.+||+++
T Consensus 222 ~~~-~i~g~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~---------~p~~~a~~~Yda~~ 288 (375)
T 3i09_A 222 KTM-KLAALLMFINDVHA---LGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMKK---------MPSSLQAADYSSVT 288 (375)
T ss_dssp GTC-EEEESSCCHHHHHH---HCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSS---------CCCHHHHHHHHHHH
T ss_pred cCc-eEEecccchhhHhh---hChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHCC---------CCcHHHHHHHHHHH
Confidence 655 44544444332111 123568898877666655579999999999999986 78899999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeecC
Q 043468 240 SVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGK 293 (720)
Q Consensus 240 ~~a~al~~~~~~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~ 293 (720)
++++|++++++.+++.++++|++++|+|+.|.++|+++|++. ..+.|++++++
T Consensus 289 ~~~~Al~~ag~~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~ 341 (375)
T 3i09_A 289 TYLKAVQAAGSTDSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKP 341 (375)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCG
T ss_pred HHHHHHHHhCCCCHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEecc
Confidence 999999999988999999999999999999999999999886 67789999754
No 18
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.97 E-value=1.6e-31 Score=283.09 Aligned_cols=293 Identities=12% Similarity=0.120 Sum_probs=245.1
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccc-cCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWA-TERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVT 80 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~-~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ 80 (720)
+|+++++|++||||.+|..+.+++++++..++|+|+++++++.++ ...++|+||+.|++..++.++++++.++||++|+
T Consensus 67 ~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~va 146 (387)
T 3i45_A 67 ELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWA 146 (387)
T ss_dssp HHHHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEE
T ss_pred HHHHhcCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEE
Confidence 577667999999999999999999999999999999998888887 4678999999999999999999999999999999
Q ss_pred EEEEcCCCcccCcHHHHHHHHHHc--CcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468 81 VIYEDIDSSATGILPHLSDALREA--GAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKM 158 (720)
Q Consensus 81 ii~~~~~~g~~~~~~~~~~~~~~~--g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~ 158 (720)
+|+.++++|... .+.+++.+++. |++++....++.+.. |+.+.+++++++++|+|++.+.+.++..+++++++.|+
T Consensus 147 ii~~~~~~g~~~-~~~~~~~l~~~~~g~~vv~~~~~~~~~~-d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~ 224 (387)
T 3i45_A 147 TIAPNYEYGQSA-VARFKELLLAARPEVTFVAEQWPALYKL-DAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGL 224 (387)
T ss_dssp EECCSSHHHHHH-HHHHHHHHHHHCTTCEEEEEECCCTTCC-CHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTS
T ss_pred EEeCCchHhHHH-HHHHHHHHHHhCCCcEEEeeecCCCCCc-CHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCC
Confidence 999888777665 89999999998 999999888887776 99999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCcccccccccCcchhhhccccEEEEe-cCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhH
Q 043468 159 MEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRS-HFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDA 237 (720)
Q Consensus 159 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yda 237 (720)
... +++.+...... ...........+|++.... +....+|..++|.++|+++++. .|+.+++.+||+
T Consensus 225 ~~~--~~i~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---------~p~~~~~~~Yda 292 (387)
T 3i45_A 225 FAG--RQVVSMLTGEP-EYLNPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWKE---------DPFVGSLVGYNT 292 (387)
T ss_dssp STT--CEEEEEEEESH-HHHGGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHSS---------CCCHHHHHHHHH
T ss_pred CCC--CeEEeecCCCh-HHHHHhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHCC---------CCCcHHHHHHHH
Confidence 643 33333222111 1111111235678775432 3334579999999999999976 788899999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEee-cCceEEEEEEecCCCcc
Q 043468 238 VWSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLM-GKSYRELGFWTYGLGFS 308 (720)
Q Consensus 238 v~~~a~al~~~~~~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~-~~~~~~v~~w~~~~~~~ 308 (720)
++++++|++++++.+++.+.++|++++|+|++|+++|++++++......|.+++ +++...++.|....+..
T Consensus 293 ~~~~a~Al~~ag~~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~~~ 364 (387)
T 3i45_A 293 LTAMAVAFEKAGGTESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDGGS 364 (387)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECGGG
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEEeCchh
Confidence 999999999999999999999999999999999999997555555778888876 55678899998765543
No 19
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.97 E-value=2.1e-31 Score=278.93 Aligned_cols=285 Identities=13% Similarity=0.137 Sum_probs=245.3
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHH-HhCCCeEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIV-QSWEWHQVT 80 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l-~~~~~~~v~ 80 (720)
+|++ ++|++||||.+|..+.+++++++..++|+|++.++++.+++..++++||+.|++..++.++++++ +++||++|+
T Consensus 64 ~l~~-~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ia 142 (356)
T 3ipc_A 64 KFVA-DGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVA 142 (356)
T ss_dssp HHHH-TTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHH-CCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEE
Confidence 5665 89999999999999999999999999999999999988887778999999999999999999986 556999999
Q ss_pred EEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 81 VIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 81 ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
+|+.++.+|... .+.+++.+++.|++++....++.+.. ++.+.++++++.++|+|++++...++..+++++++.|+
T Consensus 143 ii~~~~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~-d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~-- 218 (356)
T 3ipc_A 143 IIHDKTPYGQGL-ADETKKAANAAGVTEVMYEGVNVGDK-DFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGL-- 218 (356)
T ss_dssp EEECSSHHHHHH-HHHHHHHHHHTTCCCSEEEECCTTCC-CCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTC--
T ss_pred EEeCCChHHHHH-HHHHHHHHHHcCCEEEEEEeeCCCCC-CHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCC--
Confidence 999987776555 89999999999999988888877766 99999999999999999999999999999999999999
Q ss_pred CCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHHHH
Q 043468 161 KDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWS 240 (720)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav~~ 240 (720)
...|++++.+... . .....+...+|++....+.+..+|..++|.++|+++ +. .|+.+++.+||++++
T Consensus 219 -~~~~~~~~~~~~~-~-~~~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~~---------~p~~~~~~~yda~~~ 285 (356)
T 3ipc_A 219 -KAKLVSGDGIVSN-E-LASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-GF---------NPEAYTLYSYAAMQA 285 (356)
T ss_dssp -CCEEEECGGGCSH-H-HHHHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-TC---------CCCTTHHHHHHHHHH
T ss_pred -CCcEEEeccccCH-H-HHHHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-CC---------CcchhHHHHHHHHHH
Confidence 4567777665432 1 111234567888876655544578999999999988 55 678899999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeec---CceEEEEEEecC
Q 043468 241 VALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMG---KSYRELGFWTYG 304 (720)
Q Consensus 241 ~a~al~~~~~~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~---~~~~~v~~w~~~ 304 (720)
+++|++++++.+++.+.++|++.+|+|++|+++||++|++....+.|+++++ |+|..+..|...
T Consensus 286 ~~~al~~ag~~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 286 IAGAAKAAGSVEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred HHHHHHHhCCCCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 9999999998899999999999999999999999999999877899999994 899999998765
No 20
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.97 E-value=4.2e-31 Score=279.02 Aligned_cols=277 Identities=14% Similarity=0.139 Sum_probs=239.6
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCccccc-CCCCeEEEeecChHHHHHHHHHHHHhCCCeEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-ERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVT 80 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ 80 (720)
+|+++++|++||||.+|..+.+++++++..++|+|+++++++.++. ..+||+||+.|++..+++++++++.+.||++|+
T Consensus 67 ~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~va 146 (379)
T 3n0w_A 67 EWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWF 146 (379)
T ss_dssp HHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhCCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEE
Confidence 5777799999999999999999999999999999999988888874 568999999999999999999999889999999
Q ss_pred EEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 81 VIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 81 ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
+|++++.+|... .+.+++.+++.|++++....++.++. |+.+.+.+++++++|+|++.+.+.++..++++++++|+..
T Consensus 147 ii~~~~~~g~~~-~~~~~~~~~~~G~~v~~~~~~~~~~~-d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~ 224 (379)
T 3n0w_A 147 LMLPDAAYGDLM-NAAIRRELTAGGGQIVGSVRFPFETQ-DFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPS 224 (379)
T ss_dssp EEEESSHHHHHH-HHHHHHHHHHHTCEEEEEEEECTTCC-CCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSC
T ss_pred EEecccchhHHH-HHHHHHHHHHcCCEEEEEEeCCCCCC-CHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCC
Confidence 999988877655 89999999999999999988887776 9999999999999999999999999999999999999976
Q ss_pred CCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHHHH
Q 043468 161 KDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWS 240 (720)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav~~ 240 (720)
+.+ ++.+..+... . .........+|++...++....+|..++|.++|+++++. .|+.+++.+||++++
T Consensus 225 ~~~-~~~~~~~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~---------~p~~~~~~~Yda~~~ 292 (379)
T 3n0w_A 225 KTQ-KVGGMIDILT-D-VKSAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMGK---------MPTNNQAGGYSAALQ 292 (379)
T ss_dssp SSC-EEECCBCCHH-H-HHHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSS---------CCCHHHHHHHHHHHH
T ss_pred CCc-EEEecccchH-H-HHhhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHCC---------CCChHHHHHHHHHHH
Confidence 433 4444433221 1 111123568898877766655579999999999999986 788999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHcccccCceee-EEEecCCcCCCCeEEEEEeecC
Q 043468 241 VALAMEQKSEKLNQKLLRRILLSDFDGLTGK-VEFMNQKVAPAHTYQIINLMGK 293 (720)
Q Consensus 241 ~a~al~~~~~~~~~~l~~~l~~~~~~g~~G~-v~f~~~g~~~~~~~~i~~~~~~ 293 (720)
+++|++++++.+++.++++|++++|+|..|. ++|+++|++. ..+.|++++++
T Consensus 293 ~~~Al~~ag~~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~~ 345 (379)
T 3n0w_A 293 YLKAVNAIGSKDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKKP 345 (379)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECCG
T ss_pred HHHHHHHhCCCCHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEch
Confidence 9999999998999999999999999998884 8999988876 77889999864
No 21
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.97 E-value=1.3e-31 Score=290.66 Aligned_cols=291 Identities=21% Similarity=0.377 Sum_probs=208.0
Q ss_pred CCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCccccc-CCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 7 QKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-ERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 7 ~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
++|.|||||.+|+.+.+++++++.+++|+|+++++++.+++ .+|||+||+.|++..++.+++++++++||+||++|++|
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d 195 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASE 195 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEc
Confidence 78999999999999999999999999999999999999995 68999999999999999999999999999999999999
Q ss_pred CCCcccCcHHHHHHHHHH-cCcEEEEEEecCCCCc-c--cHHHHHHHhh-cCCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 86 IDSSATGILPHLSDALRE-AGAEIIHVLALPHFPS-S--RLSEELEKLK-GGQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 86 ~~~g~~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~-~--d~~~~l~~i~-~~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
+++|... .+.+++.+++ .|+||+..+.++.... . |+.+++.+++ ++++|+|++++.++++..+++++++.|+.+
T Consensus 196 ~~~G~~~-~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~ 274 (481)
T 3mq4_A 196 GSYGEKG-VESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVG 274 (481)
T ss_dssp CHHHHHH-HHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CEEECCCSSHHHHHC----------
T ss_pred chhHHHH-HHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEEEEEEChHHHHHHHHHHHHccCCc
Confidence 9988776 8888888875 7999998888765422 2 7888999998 579999999999999999999999999975
Q ss_pred CCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHH---------------HHHhcccCCC-----
Q 043468 161 KDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRF---------------RKRFGAEYPE----- 220 (720)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~---------------~~~~~~~~~~----- 220 (720)
.++||+++.|........ ......+|.+++..+..+ .|.+++|++.. +..++=....
T Consensus 275 -~~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~-ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~ 351 (481)
T 3mq4_A 275 -HFLWVGSDSWGSKINPLH-QHEDIAEGAITIQPKRAT-VEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKK 351 (481)
T ss_dssp -CCCEEEC------------------CCCEEEEECCCC-CHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCCC-------
T ss_pred -ceEEEEECcccccccccc-ccchhhccEEEEecCcCc-cccHHHHhhcCCcCcCCCCHHHHHHHHHhcCCCCCCccccc
Confidence 369999999875432222 224678899999876544 48888876542 2122100000
Q ss_pred --CCCCCCC------------CchhhhHhhHHHHHHHHHHHHHH---------------HhHHHHHHHHHcccccCcee-
Q 043468 221 --EDNNHEP------------GALAVQTYDAVWSVALAMEQKSE---------------KLNQKLLRRILLSDFDGLTG- 270 (720)
Q Consensus 221 --~~~~~~~------------~~~~~~~Ydav~~~a~al~~~~~---------------~~~~~l~~~l~~~~~~g~~G- 270 (720)
...+|.. .......||||+++|+|||++.. .+++.|..+|++++|.+..|
T Consensus 352 ~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~F~~~~G~ 431 (481)
T 3mq4_A 352 EDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFNGSAGT 431 (481)
T ss_dssp -----CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHTSCHHHHHHHHHTCEEECTTSS
T ss_pred cccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCcCHHHHHHHHhcceeecCCCC
Confidence 0011211 13345799999999999998753 13568999999999999999
Q ss_pred eEEEecCCcCCCCeEEEEEeec---C--ceEEEEEEe
Q 043468 271 KVEFMNQKVAPAHTYQIINLMG---K--SYRELGFWT 302 (720)
Q Consensus 271 ~v~f~~~g~~~~~~~~i~~~~~---~--~~~~v~~w~ 302 (720)
.+.||++|+.. ..|+|++|+. + .+++||.|+
T Consensus 432 ~v~fd~~Gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 432 PVMFNKNGDAP-GRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp EEECCTTSCCC-CEEEEEEEC-----CCCEEEEEEEE
T ss_pred EEEECCCCCCc-eeEEEEEEEECCCCcEEEEEEEEEc
Confidence 89999999997 8999999972 2 578899998
No 22
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.97 E-value=4e-30 Score=271.33 Aligned_cols=286 Identities=13% Similarity=0.155 Sum_probs=248.4
Q ss_pred CcccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCccccc-CCCCeEEEeecChHHHHHHHHHHHHhCCCeEE
Q 043468 1 MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-ERWPFLLQASQNQLAQMKAIAAIVQSWEWHQV 79 (720)
Q Consensus 1 ~~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v 79 (720)
++|+++++|++||||.+|..+.+++++++..++|+|+++++++.+++ ..++++||+.|++..++..+++++.+.||++|
T Consensus 75 ~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~i 154 (375)
T 4evq_A 75 TKLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKA 154 (375)
T ss_dssp HCCCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEE
Confidence 36787789999999999999999999999999999999998888874 45899999999999999999999999999999
Q ss_pred EEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 80 TVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 80 ~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
++|+.++.+|... .+.+++.+++.|++++....++.+.. |+.+.++++++.++|+|++.+...++..+++++++.|+.
T Consensus 155 a~i~~~~~~~~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~-d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~ 232 (375)
T 4evq_A 155 VTVTWKYAAGEEM-VSGFKKSFTAGKGEVVKDITIAFPDV-EFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLG 232 (375)
T ss_dssp EEEEESSHHHHHH-HHHHHHHHHHTTCEEEEEEEECTTCC-CCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCC
T ss_pred EEEecCchHHHHH-HHHHHHHHHHcCCeEEEEEecCCCCc-cHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCC
Confidence 9999887777555 89999999999999988888877766 999999999999999999989999999999999999994
Q ss_pred CCCeEEEEeCcccccccccCcchhhhccccEEEEecCCC-CChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHH
Q 043468 160 EKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPE-DKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAV 238 (720)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav 238 (720)
.+|++++ +... . .....+...+|++....+.+. .+|..++|.++|+++++. .|+.+++.+||++
T Consensus 233 ---vp~~~~~-~~~~-~-~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---------~p~~~~~~~yda~ 297 (375)
T 4evq_A 233 ---IPLWGPG-FLTD-G-VEAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYKI---------PPDVFAVQGWDAG 297 (375)
T ss_dssp ---CCEEEEG-GGTT-T-THHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS---------CCCHHHHHHHHHH
T ss_pred ---ceEEecC-cCCH-H-HHHhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHCC---------CCcHHHHHHHHHH
Confidence 4566664 3221 1 112234678899877655443 369999999999999986 7888999999999
Q ss_pred HHHHHHHHHHHH--HhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeecCceEEEEEEecC
Q 043468 239 WSVALAMEQKSE--KLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYG 304 (720)
Q Consensus 239 ~~~a~al~~~~~--~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~v~~w~~~ 304 (720)
+++++|+++++. .+++.+.++|++++|+|++|+++|+++|++. ..+.|+++++++++.++.+-+.
T Consensus 298 ~~~~~al~~~g~~~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~ 364 (375)
T 4evq_A 298 QLLDAGVKAVGGDVAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAAPA 364 (375)
T ss_dssp HHHHHHHHHTTTCTTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEECS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehhhc
Confidence 999999999986 6899999999999999999999999999886 6899999999999999888664
No 23
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.97 E-value=5.6e-31 Score=281.98 Aligned_cols=286 Identities=13% Similarity=0.099 Sum_probs=237.1
Q ss_pred CcccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccc------cCCCCeEEEeecChHHHHHHHHHHHHhC
Q 043468 1 MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWA------TERWPFLLQASQNQLAQMKAIAAIVQSW 74 (720)
Q Consensus 1 ~~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~------~~~~~~~fr~~p~~~~~~~~~~~~l~~~ 74 (720)
++|+++++|.+||||.+|..+.+++++++.+++|+|++++ ++.++ ...|+|+||+.|++..++.+++++++++
T Consensus 76 ~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~-~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~ 154 (419)
T 3h5l_A 76 QRLIDRDNASALIAGYNLENGTALHDVAADAGVIAMHANT-VAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDI 154 (419)
T ss_dssp HHHHHTTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECCC-CHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHH
T ss_pred HHHhhhcCCeEEEccccchhHHHhHHHHHHcCCeEEEcCc-chhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHH
Confidence 3688789999999999999999999999999999999754 33322 2478999999999999999999998775
Q ss_pred --------CCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC-HHH
Q 043468 75 --------EWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS-LEL 145 (720)
Q Consensus 75 --------~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~-~~~ 145 (720)
+|++|++|++++++|... .+.+++.+++.|++|+..+.++.++. |+.+++++|+++++|+|++.+. +++
T Consensus 155 ~~~~~~~~~~~~vail~~~~~~g~~~-~~~~~~~~~~~g~~vv~~~~~~~~~~-d~~~~l~~i~~~~~d~v~~~~~~~~~ 232 (419)
T 3h5l_A 155 EDNGEFSRPNNKIAIITGPGIYSVNI-ANAIRDGAGEYGYDVSLFETVAIPVS-DWGPTLAKLRADPPAVIVVTHFYPQD 232 (419)
T ss_dssp HHTTSCCCSSSEEEEEECSSHHHHHH-HHHHHHHGGGGTCEEEEEEECCSSCS-CCHHHHHHHHHSCCSEEEECCCCHHH
T ss_pred HhhccccCCCCEEEEEEcCcchhHHH-HHHHHHHHHHcCCeEEEEecCCCCCc-cHHHHHHHHHhcCCCEEEEccccCch
Confidence 899999999988887665 99999999999999999999988776 9999999999999999999865 688
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCC
Q 043468 146 AVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNH 225 (720)
Q Consensus 146 ~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 225 (720)
+..+++++++.|+ +..|+.++.+... . .....+...+|++....+....+|..++|.++|+++++.
T Consensus 233 ~~~~~~~~~~~g~---~~~~~~~~~~~~~-~-~~~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------- 298 (419)
T 3h5l_A 233 QALFMNQFMTDPT---NSLVYLQYGASLA-A-FRDIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGD--------- 298 (419)
T ss_dssp HHHHHHHHTTSCC---SCEEEECSGGGSH-H-HHHHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHcCC---CceEEecCCCCcH-H-HHHhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCC---------
Confidence 9999999999999 4577777766432 1 112234667888866544445578999999999999986
Q ss_pred CCC-chhhhHhhHHHHHHHHHHHHHH-------HhHHHHHHHHHcccccCceeeEEEecCCcCC------------CCeE
Q 043468 226 EPG-ALAVQTYDAVWSVALAMEQKSE-------KLNQKLLRRILLSDFDGLTGKVEFMNQKVAP------------AHTY 285 (720)
Q Consensus 226 ~~~-~~~~~~Ydav~~~a~al~~~~~-------~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~------------~~~~ 285 (720)
.|. .+++.+||+++++++|++++++ .+++.++++|++++|+|++|.++||++|+.. ...+
T Consensus 299 ~p~~~~a~~~Yda~~~~~~a~~~a~~~~~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~~~ 378 (419)
T 3h5l_A 299 LSSTASGCQTYSALYAYSIAAALAGGPGAPYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPH 378 (419)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSEEC
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhcCCccCCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCccccCCc
Confidence 454 5889999999999999999875 6889999999999999999999999998843 2346
Q ss_pred EEEEeecCceEEEEEEec
Q 043468 286 QIINLMGKSYRELGFWTY 303 (720)
Q Consensus 286 ~i~~~~~~~~~~v~~w~~ 303 (720)
.|+||++++++.+..|-.
T Consensus 379 ~i~q~q~g~~~~~~V~P~ 396 (419)
T 3h5l_A 379 IFSQIFDKAEDGVLIAPA 396 (419)
T ss_dssp EEEECCCTTSCCEEEEST
T ss_pred eEEEeeCCceeeEEECCc
Confidence 689999888833334644
No 24
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=99.97 E-value=8.2e-31 Score=272.88 Aligned_cols=261 Identities=16% Similarity=0.258 Sum_probs=208.8
Q ss_pred ccccCCeEEEECC-CCChhhHH--HHHhhccCCCcEEecccCCc-cccc-CCCCeEEEeecChHHHHHHHHHHHHhCCCe
Q 043468 3 LMDSQKVEAILGP-QTSEETSS--VAEIASKKQIPVLSFADATP-NWAT-ERWPFLLQASQNQLAQMKAIAAIVQSWEWH 77 (720)
Q Consensus 3 Li~~~~v~aiiGp-~~s~~~~~--~~~~~~~~~ip~is~~~~~~-~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~ 77 (720)
++..++|.||||+ .++..+.+ ++.+++.+++|+|+++++++ .+++ .+|||+||+.|++..++.+++++++++||+
T Consensus 58 ~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~ 137 (364)
T 3qel_B 58 LMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWY 137 (364)
T ss_dssp HHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCe
Confidence 4556789898854 44444555 88999999999999999988 8884 679999999999999999999999999999
Q ss_pred EEEEEEEcCCCcccCcHHHHHHHHHHc--Cc--EEEEEE--ecCCCCcccHHHHH-HHhhcCCCeEEEEEcCHHHHHHHH
Q 043468 78 QVTVIYEDIDSSATGILPHLSDALREA--GA--EIIHVL--ALPHFPSSRLSEEL-EKLKGGQCRVFVVHLSLELAVHLF 150 (720)
Q Consensus 78 ~v~ii~~~~~~g~~~~~~~~~~~~~~~--g~--~v~~~~--~~~~~~~~d~~~~l-~~i~~~~~~vvil~~~~~~~~~~l 150 (720)
+|++||+|+ .+ .+.+.+.+++. |. |+.... .+..+.. ++...+ ++++++++++|+++|+.+++..++
T Consensus 138 ~V~iI~~d~----~g-~~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~-~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll 211 (364)
T 3qel_B 138 IFSIVTTYF----PG-YQDFVNKIRSTIENSFVGWELEEVLLLDMSLD-DGDSKIQNQLKKLQSPIILLYCTKEEATYIF 211 (364)
T ss_dssp EEEEEEESC----TT-HHHHHHHHHHHHHTCSSCCEEEEEEEECTTSC-SSSCHHHHHHTTCCCSEEEEESCHHHHHHHH
T ss_pred EEEEEEeCC----cc-HHHHHHHHHHHhhccccceEEEEEEccCCCcc-cHHHHHHHHHHccCCcEEEEEcCHHHHHHHH
Confidence 999999985 33 56666666665 43 554443 3444334 788888 699999999999999999999999
Q ss_pred HHHHHcCCCCCCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCch
Q 043468 151 EKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGAL 230 (720)
Q Consensus 151 ~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
++|.++|+.+++|+||.++.+..+..... .....|++++.... | . ...
T Consensus 212 ~~a~~~g~~~~~y~wI~t~~~~~~~~~~~---~~~~~g~~~~~~~~-------------W-----~-----------~~~ 259 (364)
T 3qel_B 212 EVANSVGLTGYGYTWIVPSLVAGDTDTVP---SEFPTGLISVSYDE-------------W-----D-----------YGL 259 (364)
T ss_dssp HHHHTTTCSSTTCEEEECHHHHCSTTCCC---TTSCTTCEECCBCT-------------T-----T-----------SCH
T ss_pred HHHHHcCCCCCCeEEEEecccccCccccc---ccCCCceEEEeecc-------------c-----h-----------hhH
Confidence 99999999998999999988643332221 23457888765432 1 1 123
Q ss_pred hhhHhhHHHHHHHHHHHHHH--------------------HhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEe
Q 043468 231 AVQTYDAVWSVALAMEQKSE--------------------KLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINL 290 (720)
Q Consensus 231 ~~~~Ydav~~~a~al~~~~~--------------------~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~ 290 (720)
.+..||||+++|+|++++.. .+|..|.++|++++|+|. ++.||++|++.++.|+|+++
T Consensus 260 ~~~~yDaV~~~A~A~~~~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl 337 (364)
T 3qel_B 260 PARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILL 337 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEE
Confidence 57899999999999987642 245678999999999997 78999999999999999999
Q ss_pred e-cCceEEEEEEec
Q 043468 291 M-GKSYRELGFWTY 303 (720)
Q Consensus 291 ~-~~~~~~v~~w~~ 303 (720)
+ +.+|++||.|+.
T Consensus 338 ~~~~~~~~VG~W~~ 351 (364)
T 3qel_B 338 NKERKWERVGKWKD 351 (364)
T ss_dssp CTTSCEEEEEEECS
T ss_pred cCCCCcEEEEEECC
Confidence 8 678999999984
No 25
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.97 E-value=1.2e-30 Score=273.44 Aligned_cols=286 Identities=16% Similarity=0.210 Sum_probs=244.5
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTV 81 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~i 81 (720)
+|+++++|++||||.+|..+.++++.++..++|+|+++++++.++... +|+||+.|++..++..+++++.+.||++|++
T Consensus 66 ~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~ 144 (358)
T 3hut_A 66 AFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAV 144 (358)
T ss_dssp HHHHCTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEE
T ss_pred HHhccCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEE
Confidence 567679999999999999999999999999999999998888887544 9999999999999999999988889999999
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCCC
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEK 161 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~~ 161 (720)
|+.++.++... .+.+++.+++.|++++....++.+.. ++.+.++++++.++|+|++.++..++..+++++++.|+
T Consensus 145 i~~~~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~-~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~--- 219 (358)
T 3hut_A 145 IGVTTDWGLSS-AQAFRKAFELRGGAVVVNEEVPPGNR-RFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGS--- 219 (358)
T ss_dssp EEESSHHHHHH-HHHHHHHHHHTTCEEEEEEEECTTCC-CCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTC---
T ss_pred EecCcHHHHHH-HHHHHHHHHHcCCEEEEEEecCCCCc-cHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCC---
Confidence 99887777555 89999999999999998888877666 99999999999999999999999999999999999999
Q ss_pred CeEEEEeCcccccccccCcchhhhccccEEEEecCCC-CChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHHHH
Q 043468 162 DYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPE-DKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWS 240 (720)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav~~ 240 (720)
+.+|++++.+... . .........+|++....+.+. .+|..++|.++|+++++. .|+.+++.+||++++
T Consensus 220 ~~p~~~~~~~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---------~p~~~~~~~yda~~~ 288 (358)
T 3hut_A 220 ALPVYGSSALYSP-K-FIDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGA---------IPTLFAAHGYDAVGI 288 (358)
T ss_dssp CCCEEECGGGCSH-H-HHHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS---------CCCHHHHHHHHHHHH
T ss_pred CCcEEecCcccCH-H-HHHHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHCC---------CCCHHHHHHHHHHHH
Confidence 4567777665432 1 112234568898877665543 478999999999999987 788999999999999
Q ss_pred HHHHHHHHHHHhHHH-HHHHHHcc-cccCceeeEEEecCCcCCCCeEEEEEeecCceEEEEEEecC
Q 043468 241 VALAMEQKSEKLNQK-LLRRILLS-DFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYG 304 (720)
Q Consensus 241 ~a~al~~~~~~~~~~-l~~~l~~~-~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~v~~w~~~ 304 (720)
+++|++++++.+++. +.++|+++ +|+|++|+++|+++|++....+.|+++++|+|+.+..+++.
T Consensus 289 ~~~al~~ag~~~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~~ 354 (358)
T 3hut_A 289 MLAAVGRAGPEVTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGHH 354 (358)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC------
T ss_pred HHHHHHHhCCCChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEecccccc
Confidence 999999999888898 99999999 99999999999999998557889999999999988766654
No 26
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.97 E-value=2.4e-30 Score=272.29 Aligned_cols=284 Identities=14% Similarity=0.214 Sum_probs=241.8
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTV 81 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~i 81 (720)
+|+++++|++||||.+|..+.+++++++..++|+|+++++++.++.. ++|+||+.|++..++.++++++.+.||+++++
T Consensus 66 ~li~~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~ 144 (368)
T 4eyg_A 66 ELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVAT 144 (368)
T ss_dssp HHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHhcCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEE
Confidence 57777999999999999999999999999999999999888887754 79999999999999999999999999999999
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCCC
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEK 161 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~~ 161 (720)
|+.++.+|... .+.+++.+++.|++++....++.+.. |+.+.++++++.++|+|++.+...++..+++++++.|+..+
T Consensus 145 i~~~~~~g~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~-d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~ 222 (368)
T 4eyg_A 145 LTSDYAPGNDA-LAFFKERFTAGGGEIVEEIKVPLANP-DFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKS 222 (368)
T ss_dssp EEESSHHHHHH-HHHHHHHHHHTTCEEEEEEEECSSSC-CCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGT
T ss_pred EecCchHhHHH-HHHHHHHHHHcCCEEEEEEeCCCCCC-cHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcC
Confidence 99887777555 89999999999999999888887766 99999999999999999998888899999999999999765
Q ss_pred CeEEEEeCcccccccccCcchhhhccccEEEEecCC-CCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHHHH
Q 043468 162 DYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFP-EDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWS 240 (720)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav~~ 240 (720)
+++|++++.+... .... ..+...+|++....+.. ..+|..++|.++| ++++.. .|+.+++.+||++++
T Consensus 223 ~v~~~~~~~~~~~-~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~--------~p~~~~~~~yda~~~ 291 (368)
T 4eyg_A 223 GIKVIGPGDVMDD-DLLN-SMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFGQ--------RPGFMAVGGYDGIHL 291 (368)
T ss_dssp TCEEEEETTTTCH-HHHT-TCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHSS--------CCCHHHHHHHHHHHH
T ss_pred CceEEecCcccCH-HHHH-hhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCCC--------CCChHHHHHHHHHHH
Confidence 5788888753321 1111 12356788887665543 3469999999999 888432 788899999999999
Q ss_pred HHHHHHHHH-HHhHHHHHHHHHcccccCceeeEEEe-cCCcCCCCeEEEEEee--cCceEEEEE
Q 043468 241 VALAMEQKS-EKLNQKLLRRILLSDFDGLTGKVEFM-NQKVAPAHTYQIINLM--GKSYRELGF 300 (720)
Q Consensus 241 ~a~al~~~~-~~~~~~l~~~l~~~~~~g~~G~v~f~-~~g~~~~~~~~i~~~~--~~~~~~v~~ 300 (720)
+++|+++++ +.+++.+.++|++++|+|++|+++|| ++|+. ...+.|.+++ +|+|+.+..
T Consensus 292 ~~~al~~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~~ 354 (368)
T 4eyg_A 292 VFEALKKTGGKADGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIEF 354 (368)
T ss_dssp HHHHHHHTTTCCSHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEEe
Confidence 999999998 57899999999999999999999999 56655 4778899998 788866543
No 27
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.97 E-value=4.6e-30 Score=267.69 Aligned_cols=280 Identities=12% Similarity=0.177 Sum_probs=237.1
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHH-HhCCCeEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIV-QSWEWHQVT 80 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l-~~~~~~~v~ 80 (720)
+|+ +++|++||||.+|..+.++++.++..++|+|+++++++.+++..++++||+.|++..++..+++++ +++||++|+
T Consensus 64 ~l~-~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~ 142 (346)
T 1usg_A 64 KIV-NDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIA 142 (346)
T ss_dssp HHH-HTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEE
T ss_pred HHH-hCCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEE
Confidence 456 479999999999998899999999999999999888887775457999999999999999999998 457999999
Q ss_pred EEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 81 VIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 81 ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
+|+.++.++... .+.+++.+++.|++++....++.+.. |+.+.++++++.++|+|++.+...++..+++++++.|+.
T Consensus 143 ~i~~~~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~-d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~- 219 (346)
T 1usg_A 143 IIHDKQQYGEGL-ARSVQDGLKAANANVVFFDGITAGEK-DFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLK- 219 (346)
T ss_dssp EEECSSHHHHHH-HHHHHHHHHHTTCCEEEEEECCTTCC-CCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCC-
T ss_pred EEECCCchHHHH-HHHHHHHHHHcCCEEEEEeccCCCCc-CHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCC-
Confidence 999877666444 78999999999999988777766655 899999999999999999999889999999999999984
Q ss_pred CCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHHHH
Q 043468 161 KDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWS 240 (720)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav~~ 240 (720)
..|++++.+... . .....+...+|++...++....+|..++|.++|+++++. .|+.++..+||++++
T Consensus 220 --~~~~~~~~~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~---------~~~~~~~~~yda~~~ 286 (346)
T 1usg_A 220 --TQFMGPEGVGNA-S-LSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKD---------PSGPYVWITYAAVQS 286 (346)
T ss_dssp --CEEEECGGGCCT-T-HHHHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTCC---------CCCHHHHHHHHHHHH
T ss_pred --CeEEecCCCCcH-H-HHHHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhCC---------CCchhHHHHHHHHHH
Confidence 458887766432 1 111223567898876655444568899999999998865 678889999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEee-cCceEEE
Q 043468 241 VALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLM-GKSYREL 298 (720)
Q Consensus 241 ~a~al~~~~~~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~-~~~~~~v 298 (720)
+++|++++++.+++.+.++|++.+|+|++|+++|+++|++....+.+++++ +|+++.+
T Consensus 287 ~~~al~~~g~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 287 LATALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred HHHHHHHhCCCCHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 999999998888999999999999999999999999999876788999999 8887764
No 28
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.97 E-value=2.3e-30 Score=274.81 Aligned_cols=292 Identities=11% Similarity=0.122 Sum_probs=245.8
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHh-CCCeEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQS-WEWHQVT 80 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~-~~~~~v~ 80 (720)
+|+++++|++||| .+|..+.+++++++..++|+|+++++++......++|+||+.|++..++.++++++.+ +||++|+
T Consensus 69 ~li~~~~V~~iig-~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~ia 147 (392)
T 3lkb_A 69 EAVDRFKIPVFLS-YATGANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVA 147 (392)
T ss_dssp HHHHTTCCSCEEE-CCHHHHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHhhcCcEEEEe-CCcHHHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEE
Confidence 5777679999999 6888899999999999999999876544333457899999999999999999999866 6999999
Q ss_pred EEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 81 VIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 81 ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
+|+.++++|... .+.+++.+++.|++++....++.+.. |+.+.++++++.++|+|++.+...++..+++++++.|+
T Consensus 148 ii~~~~~~g~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~-d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~-- 223 (392)
T 3lkb_A 148 LVVHPSPFGRAP-VEDARKAARELGLQIVDVQEVGSGNL-DNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGL-- 223 (392)
T ss_dssp EEECSSHHHHTT-HHHHHHHHHHHTCEEEEEEECCTTCC-CCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTC--
T ss_pred EEEeCCchhhhH-HHHHHHHHHHcCCeEEEEEeeCCCCc-CHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCC--
Confidence 999887777666 89999999999999999888887766 99999999999999999999999999999999999999
Q ss_pred CCeEEEEeCcccccccccCcchhhhccccEEEEecCC-CCChhHHHHHHHHHHHhcccCCCCCCCCCCCch----hhhHh
Q 043468 161 KDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFP-EDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGAL----AVQTY 235 (720)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y 235 (720)
+..|+.++.+... . .....+...+|++....+.. ..++..++|.++|+++++. .|+.+ +..+|
T Consensus 224 -~~~~~~~~~~~~~-~-~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---------~p~~~~~~~~~~~y 291 (392)
T 3lkb_A 224 -KMRHLGAHYTGGP-D-LIALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGR---------PENFIESVNYTNGM 291 (392)
T ss_dssp -CCEEEECGGGCSH-H-HHHHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTC---------CHHHHTCHHHHHHH
T ss_pred -CceEEEecCcccH-H-HHHhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCC---------CcccccchhHHHHH
Confidence 4567776554332 1 11223456889887765543 2357789999999999976 45433 78999
Q ss_pred hHHHHHHHHHHHHHH----HhHHHHHHHHHccc----cc-------CceeeEEEecCCcCCCCeEEEEEeecCceEEEEE
Q 043468 236 DAVWSVALAMEQKSE----KLNQKLLRRILLSD----FD-------GLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGF 300 (720)
Q Consensus 236 dav~~~a~al~~~~~----~~~~~l~~~l~~~~----~~-------g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~v~~ 300 (720)
|+++++++|+++++. .+++.++++|++++ |+ |++|+++|+++|++....+.++++++|+++.++.
T Consensus 292 da~~~~~~al~~ag~~~~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~v~~ 371 (392)
T 3lkb_A 292 LAAAIAVEAIRRAQERFKRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTE 371 (392)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEECSC
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEeCCEEEEecc
Confidence 999999999999998 79999999999997 98 9999999999888766788899999999999999
Q ss_pred EecCCCcccc
Q 043468 301 WTYGLGFSDT 310 (720)
Q Consensus 301 w~~~~~~~~~ 310 (720)
|....++...
T Consensus 372 w~~~~~~~~~ 381 (392)
T 3lkb_A 372 PFTSALFRKV 381 (392)
T ss_dssp CBCCHHHHHH
T ss_pred ccchhHHHhh
Confidence 9887666543
No 29
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.96 E-value=1.8e-28 Score=256.22 Aligned_cols=280 Identities=19% Similarity=0.250 Sum_probs=228.5
Q ss_pred CcccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhC-CCeEE
Q 043468 1 MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSW-EWHQV 79 (720)
Q Consensus 1 ~~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~-~~~~v 79 (720)
++|+++++|.+|+||.+|..+.+++++++..++|+|+++++++.++. .++|+||+.|++..+..++++++... +++++
T Consensus 68 ~~li~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (353)
T 4gnr_A 68 TNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKV 146 (353)
T ss_dssp HHHHHTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEE
T ss_pred HHHHhhCCceEEeccccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEE
Confidence 47898999999999999999999999999999999999999888874 45899999999999999999998654 55566
Q ss_pred EEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468 80 TVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKM 158 (720)
Q Consensus 80 ~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~ 158 (720)
+++++++. +| .+ ..+...++.|++++..+.++.++. |+.+++.+++++++|+|++.+.+.++..++++++++|+
T Consensus 147 ~~~~~~~~~yg-~~---~~~~~~~~~g~~vv~~~~~~~~~~-d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~ 221 (353)
T 4gnr_A 147 VLYTDNASDYA-KG---IAKSFRESYKGEIVADETFVAGDT-DFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGI 221 (353)
T ss_dssp EEEEETTCHHH-HH---HHHHHHHHCCSEEEEEEEECTTCC-CCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTC
T ss_pred EEEEcCchHHH-HH---HHHHHHHHcCCEEEEEEeeCCCCC-CHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 66666544 33 22 223333457999999999998887 99999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCcccccccccCcchhhhccccEEEEecCC--CCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhh
Q 043468 159 MEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFP--EDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYD 236 (720)
Q Consensus 159 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yd 236 (720)
.. .++.++.+... ...........+|.+....+.. +.+|..++|.++|+++++. .|+.++..+||
T Consensus 222 ~~---~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~---------~p~~~a~~~Yd 288 (353)
T 4gnr_A 222 DK---PIVGGDGFNGE-EFVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNE---------EPSTFAALAYD 288 (353)
T ss_dssp CS---CEEECGGGCSH-HHHHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHSS---------CCCHHHHHHHH
T ss_pred CC---cEEEecccccc-hhhhhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhCC---------CCChhHHHHHH
Confidence 54 45665554432 1111112356677776655443 3368899999999999987 78999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcc-cccCceeeEEEecCCcCCCCeEEEEEeecCceEEEEEEe
Q 043468 237 AVWSVALAMEQKSEKLNQKLLRRILLS-DFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWT 302 (720)
Q Consensus 237 av~~~a~al~~~~~~~~~~l~~~l~~~-~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~v~~w~ 302 (720)
+++++++|+++++ +++.++++|+.+ +|+|++|+++||++|+.. ..+.++++++|+++.+...+
T Consensus 289 a~~~la~Ai~~a~--~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~~v~ 352 (353)
T 4gnr_A 289 SVHLVANAAKGAK--NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAAEVVK 352 (353)
T ss_dssp HHHHHHHHHTTCS--SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEEEEEC
T ss_pred HHHHHHHHHhcCC--CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEEEEeC
Confidence 9999999999775 788899999988 699999999999999886 66779999999998876543
No 30
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.96 E-value=1.2e-28 Score=261.19 Aligned_cols=284 Identities=16% Similarity=0.156 Sum_probs=237.9
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHh-CCCeEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQS-WEWHQVT 80 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~-~~~~~v~ 80 (720)
+|+++++|++||| .+|..+.+++++++..++|+|+++++++ +. .++|+||+.|++..++.++++++.+ +||++|+
T Consensus 70 ~li~~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~ia 145 (391)
T 3eaf_A 70 EFRDRYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLA 145 (391)
T ss_dssp HHHHTTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHhhcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEE
Confidence 5777789999999 6889999999999999999999876544 43 6799999999999999999999876 6999999
Q ss_pred EEEE-cCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHH--hhcCCCeEEEEEcCHHHHHHHHHHHHHcC
Q 043468 81 VIYE-DIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEK--LKGGQCRVFVVHLSLELAVHLFEKANKMK 157 (720)
Q Consensus 81 ii~~-~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~--i~~~~~~vvil~~~~~~~~~~l~~a~~~g 157 (720)
+|+. ++.+|... .+.+++.+++.|++++....++.+.. |+.+.+.+ +++.++|+|++.+++.++..+++++++.|
T Consensus 146 ii~~~~~~~g~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~-d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g 223 (391)
T 3eaf_A 146 LAYDSKVAYSRSP-IGAIKKAAPSLGLQVVGDYDLPLRAT-EADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVG 223 (391)
T ss_dssp EEECTTCHHHHTT-HHHHHHHTGGGTEEEEEEEECCTTCC-HHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHT
T ss_pred EEEecCChhHHHH-HHHHHHHHHHcCCceeeeeccCCCCc-CHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCC
Confidence 9999 77777666 99999999999999999988888776 99999999 99999999999999999999999999999
Q ss_pred CCCCCeEEEEeCcccccccccCcchhhhccc-cEEEEecC--C--CCChhHHHHHHHHHHHhcccCCCCCCCCCC--Cch
Q 043468 158 MMEKDYIWITTDAFTSLVHSINTSSISSMQG-ILGVRSHF--P--EDKPKFQDFCKRFRKRFGAEYPEEDNNHEP--GAL 230 (720)
Q Consensus 158 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~~ 230 (720)
+. ..+++++..... .. ....+...+| ++....+. + ...|. .+|.++|+++++.. .| +.+
T Consensus 224 ~~---~~~~~~~~~~~~-~~-~~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~--------~p~~~~~ 289 (391)
T 3eaf_A 224 LD---AFLLTNVWGFDE-RS-PQLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVS--------EDQINLR 289 (391)
T ss_dssp CC---CEEEECGGGCST-TH-HHHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCC--------GGGCCHH
T ss_pred CC---ceEEEeccCCCH-HH-HHhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCC--------CcccccH
Confidence 94 456665443221 11 1123456889 76555544 1 23455 68999999998731 44 478
Q ss_pred hhhHhhHHHHHHHHHHHH---H--HHhHHHHHHHHHccccc--Ccee-eEEEecCCcCCCCeEEEEEe-ecCceEEEEEE
Q 043468 231 AVQTYDAVWSVALAMEQK---S--EKLNQKLLRRILLSDFD--GLTG-KVEFMNQKVAPAHTYQIINL-MGKSYRELGFW 301 (720)
Q Consensus 231 ~~~~Ydav~~~a~al~~~---~--~~~~~~l~~~l~~~~~~--g~~G-~v~f~~~g~~~~~~~~i~~~-~~~~~~~v~~w 301 (720)
++.+||+++++++|++++ + +.+++.+.++|++.+|+ |++| +++|++++++....+.|+++ ++|+++.++.|
T Consensus 290 ~~~~yda~~~l~~Al~~a~~~g~~~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~~~~v~~~ 369 (391)
T 3eaf_A 290 VVQGFVNVWLLIKAIESVTSQDLQERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENGELQLMGKF 369 (391)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecCCEEEEeeee
Confidence 899999999999999999 7 78999999999998888 9999 99999877776788999999 89999999999
Q ss_pred ecCC
Q 043468 302 TYGL 305 (720)
Q Consensus 302 ~~~~ 305 (720)
....
T Consensus 370 ~~~~ 373 (391)
T 3eaf_A 370 EAPS 373 (391)
T ss_dssp CCCT
T ss_pred cCcc
Confidence 8643
No 31
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.96 E-value=9e-29 Score=259.67 Aligned_cols=280 Identities=10% Similarity=0.118 Sum_probs=237.8
Q ss_pred cccccCCeEEEECCCCChhhHHHHH--hhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAE--IASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQV 79 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~--~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v 79 (720)
+|+++++|++||||.+|..+.++++ +++..++|+|++.++++.+++ ++++||+.|++..++..+++++.++||++|
T Consensus 67 ~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~i 144 (364)
T 3lop_A 67 DMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRI 144 (364)
T ss_dssp HHHHHSCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCE
T ss_pred HHHhhcCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceE
Confidence 5777789999999999999999999 999999999999988887776 799999999999999999999999999999
Q ss_pred EEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 80 TVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 80 ~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
++|+.++++|... .+.+++.+++.|++++....++.+.. |+.+.++++++.++|+|++.+...++..+++++++.|+.
T Consensus 145 aii~~~~~~g~~~-~~~~~~~~~~~G~~v~~~~~~~~~~~-d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~ 222 (364)
T 3lop_A 145 GVLYQEDALGKEA-ITGVERTLKAHALAITAMASYPRNTA-NVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGE 222 (364)
T ss_dssp EEEEETTHHHHHH-HHHHHHHHHTTTCCCSEEEEECTTSC-CCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCchhhHHH-HHHHHHHHHHcCCcEEEEEEecCCCc-cHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCC
Confidence 9999988777555 89999999999999988888877766 999999999999999999999999999999999999994
Q ss_pred CCCeEEEEeCcccccccccCcchh-hhccccEEEEec---CCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHh
Q 043468 160 EKDYIWITTDAFTSLVHSINTSSI-SSMQGILGVRSH---FPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTY 235 (720)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 235 (720)
..|++.+.+... .. ....+ ...+|++....+ ....+|..++|.++|+++++... .|+.++..+|
T Consensus 223 ---~~~i~~~~~~~~-~~-~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-------~p~~~a~~~y 290 (364)
T 3lop_A 223 ---AQLLGLSSIDPG-IL-QKVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDV-------DLSFRAVEGF 290 (364)
T ss_dssp ---CEEEECTTSCHH-HH-HHHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTC-------CCCHHHHHHH
T ss_pred ---CeEEEeccCChH-HH-HHHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCC-------CCChHHHHHH
Confidence 457776665432 11 11233 567888765422 12457899999999999886421 5678899999
Q ss_pred hHHHHHHHHHHHHH-HHhHHHHHHHHHcc-cccC-ceeeEEEecCCcCCCCeEEEEEeecCceEE
Q 043468 236 DAVWSVALAMEQKS-EKLNQKLLRRILLS-DFDG-LTGKVEFMNQKVAPAHTYQIINLMGKSYRE 297 (720)
Q Consensus 236 dav~~~a~al~~~~-~~~~~~l~~~l~~~-~~~g-~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~ 297 (720)
|+++++++|+++++ +.+++.+.++|+++ +|+| .+|+++|+++++.......+.+++++++.+
T Consensus 291 da~~~~~~al~~ag~~~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~~ 355 (364)
T 3lop_A 291 VAAKVLAEAIRRAGPKPTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVI 355 (364)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCccc
Confidence 99999999999997 67999999999999 7999 999999998887776778899998766554
No 32
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.96 E-value=1.6e-28 Score=258.44 Aligned_cols=284 Identities=13% Similarity=0.153 Sum_probs=225.3
Q ss_pred CcccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCccccc-CCCCeEEEeecChHHHHHHHHHHHHhCCCeEE
Q 043468 1 MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-ERWPFLLQASQNQLAQMKAIAAIVQSWEWHQV 79 (720)
Q Consensus 1 ~~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v 79 (720)
++|+++++|.+||||.+|+.+.+++++++.+++|+|++.++++.++. ..++|+||+.|++..+..+++.++++++| ++
T Consensus 66 ~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v 144 (374)
T 3n0x_A 66 AEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TI 144 (374)
T ss_dssp HHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EE
T ss_pred HHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EE
Confidence 36887889999999999999999999999999999998888888884 45899999999999999999977888887 89
Q ss_pred EEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCC-----CeEEEEEcCHHHHHHHHHHHH
Q 043468 80 TVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQ-----CRVFVVHLSLELAVHLFEKAN 154 (720)
Q Consensus 80 ~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~-----~~vvil~~~~~~~~~~l~~a~ 154 (720)
++|++|+++|... .+.+++.+++.|++|+....++.++. |+.+++++|++++ +|+|++.+.+... .++++.
T Consensus 145 ~ii~~~~~~g~~~-~~~~~~~~~~~G~~vv~~~~~~~~~~-d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~ 220 (374)
T 3n0x_A 145 ATLAQDYAFGRDG-VAAFKEALAKTGATLATEEYVPTTTT-DFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQ 220 (374)
T ss_dssp EEEEESSHHHHHH-HHHHHHHHTTTTCEEEEEEEECTTCC-CCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHH
T ss_pred EEEeCCchHHHHH-HHHHHHHHHHcCCEEeeeecCCCCCc-cHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHH
Confidence 9999998887665 89999999999999999999988777 9999999999988 9999987443221 234555
Q ss_pred HcCCCCCCeEEEEeCcccccccccCcchhhhccccEEEEecCC--CCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhh
Q 043468 155 KMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFP--EDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAV 232 (720)
Q Consensus 155 ~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (720)
++++...++.+...+..... .. ......|+.+...+.. ..+|..++|.++|+++++. .|+.+++
T Consensus 221 ~~~~~~~g~~~~~~~~~~~~---~~--~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g~---------~p~~~a~ 286 (374)
T 3n0x_A 221 DMDPKRYGIELSTGGNILPA---LA--AYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNA---------PPDFFTA 286 (374)
T ss_dssp HTCGGGGTEEEEECCCCTTG---GG--GGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHSS---------CCCHHHH
T ss_pred HcchhhcCCeeeeccccchh---hh--hhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHCC---------CCChhHH
Confidence 55554334454443322111 11 1134566665544332 3468999999999999986 7889999
Q ss_pred hHhhHHHHHHHHHHHHHHHhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeec---CceEEEEEEec
Q 043468 233 QTYDAVWSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMG---KSYRELGFWTY 303 (720)
Q Consensus 233 ~~Ydav~~~a~al~~~~~~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~---~~~~~v~~w~~ 303 (720)
.+||+++++++|++++++.+++.++++|++++|+|++|+++|+++++.....+.|++++. +.|.....+..
T Consensus 287 ~~Yda~~~l~~Al~~ag~~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 360 (374)
T 3n0x_A 287 GGFSAAMAVVTAVQKAKSTDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDPAVAWAVLEPVRE 360 (374)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEECCTTSSSCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEeCCCcccccceEEEE
Confidence 999999999999999998999999999999999999999999965555457888999974 34444444433
No 33
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.96 E-value=7.3e-28 Score=252.71 Aligned_cols=280 Identities=15% Similarity=0.143 Sum_probs=233.1
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTV 81 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~i 81 (720)
+|+++++|++||||.+|..+.+++++++..++|+|++.++ + +....++++||+.|++..++..+++++.++||++|++
T Consensus 63 ~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~ 140 (362)
T 3snr_A 63 RFVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGY 140 (362)
T ss_dssp HHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHhccCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEE
Confidence 5776679999999999999999999999999999999876 3 3455679999999999999999999999999999999
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCCC
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEK 161 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~~ 161 (720)
|+.++.+|... .+.+++.+++.|++++....++.+.. ++.+.++++++.++|+|++.+...++..+++++++.|+.
T Consensus 141 i~~~~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~-~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~-- 216 (362)
T 3snr_A 141 IGYSDSYGDLW-FNDLKKQGEAMGLKIVGEERFARPDT-SVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYN-- 216 (362)
T ss_dssp EEESSHHHHHH-HHHHHHHHHHTTCEEEEEEEECTTCS-CCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCC--
T ss_pred EecCchHHHHH-HHHHHHHHHHcCCEEEEEeecCCCCC-CHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCC--
Confidence 99887777555 89999999999999988888877766 999999999999999999999899999999999999995
Q ss_pred CeEEEEeCcccccccccCcchhhhccccEEEEec------CC---CCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhh
Q 043468 162 DYIWITTDAFTSLVHSINTSSISSMQGILGVRSH------FP---EDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAV 232 (720)
Q Consensus 162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (720)
.+++....+... . .........+|++....+ .+ +.+|..++|.++|+++++.. .|+.++.
T Consensus 217 -~p~i~~~g~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--------~p~~~~~ 285 (362)
T 3snr_A 217 -GLIYQTHGAASM-D-FIRIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGPS--------SRSQFAG 285 (362)
T ss_dssp -SEEEECGGGCSH-H-HHHHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCTT--------CCCHHHH
T ss_pred -ccEEeccCcCcH-H-HHHHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCCC--------CCCchhH
Confidence 345666555432 1 112234678888866532 12 12367899999999999863 5788999
Q ss_pred hHhhHHHHHHHHHHHHHH-------HhHHHHHHHHHcc-cccCceeeEEEecCCcC--CCCeEEEEEeecCceEEE
Q 043468 233 QTYDAVWSVALAMEQKSE-------KLNQKLLRRILLS-DFDGLTGKVEFMNQKVA--PAHTYQIINLMGKSYREL 298 (720)
Q Consensus 233 ~~Ydav~~~a~al~~~~~-------~~~~~l~~~l~~~-~~~g~~G~v~f~~~g~~--~~~~~~i~~~~~~~~~~v 298 (720)
.+||+++++++|++++++ .+++.+.++|+++ +|+|++|+++|+++++. .+..+.++++++|+++.+
T Consensus 286 ~~yda~~~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~v 361 (362)
T 3snr_A 286 HSYDAFKVLERVVPVALKKAKPGTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVIV 361 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred hHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEEc
Confidence 999999999999999964 3478999999999 89999999999987554 346688999999988764
No 34
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.96 E-value=1.4e-28 Score=260.62 Aligned_cols=282 Identities=15% Similarity=0.143 Sum_probs=235.3
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccc--cCCCCeEEEeecChHHHHHHHHHHHHhCCCeEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWA--TERWPFLLQASQNQLAQMKAIAAIVQSWEWHQV 79 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~--~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v 79 (720)
+|+++++|++||||.+|..+.++++++++.++|+|++.++++.++ ...++|+||+.|++..+++++++++.+.||++|
T Consensus 83 ~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~i 162 (386)
T 3sg0_A 83 KLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKV 162 (386)
T ss_dssp HHHHTSCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHhhcCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEE
Confidence 577777999999999999999999999999999999998877776 467899999999999999999999999999999
Q ss_pred EEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 80 TVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 80 ~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
++|+.++.+|... .+.+++.+++.|++++....++.+.. |+.+.++++++.++|+|++.+++.++..+++++++.|+.
T Consensus 163 a~i~~~~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~-d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~ 240 (386)
T 3sg0_A 163 GYIGFSDAYGEGY-YKVLAAAAPKLGFELTTHEVYARSDA-SVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFK 240 (386)
T ss_dssp EEEEESSHHHHHH-HHHHHHHHHHHTCEECCCEEECTTCS-CCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCC
T ss_pred EEEecCchHHHHH-HHHHHHHHHHcCCEEEEEEeeCCCCC-cHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCC
Confidence 9999888777655 89999999999999987777777766 999999999999999999999989999999999999995
Q ss_pred CCCeEEEEeCcccccccccCcchhhhccccEEEEec------CCCC---ChhHHHHHHHHHHHhcccCCCCCCCCCCCch
Q 043468 160 EKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSH------FPED---KPKFQDFCKRFRKRFGAEYPEEDNNHEPGAL 230 (720)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
..++.++.+... .. ....+...+|++....+ .+.. .|..++|.++|+++++.. .|+.+
T Consensus 241 ---~~~~~~~~~~~~-~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--------~p~~~ 307 (386)
T 3sg0_A 241 ---GAIYQTHGVATE-EF-IKLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGGA--------APTIF 307 (386)
T ss_dssp ---SEEECCGGGCSH-HH-HHHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTTC--------CCCHH
T ss_pred ---CcEEeccccCCH-HH-HHhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCCC--------CCChh
Confidence 346665554432 11 12234677888865532 1222 256899999999999863 57889
Q ss_pred hhhHhhHHHHHHHHHHHHHH-------HhHHHHHHHHHcc-cccCceeeEEEecCCcCC--CCeEEEEEeecCceEEE
Q 043468 231 AVQTYDAVWSVALAMEQKSE-------KLNQKLLRRILLS-DFDGLTGKVEFMNQKVAP--AHTYQIINLMGKSYREL 298 (720)
Q Consensus 231 ~~~~Ydav~~~a~al~~~~~-------~~~~~l~~~l~~~-~~~g~~G~v~f~~~g~~~--~~~~~i~~~~~~~~~~v 298 (720)
+..+||+++++++|+++++. .+++.+.++|+++ +|+|++|+++|+++++.. +..+.++++++|+++.+
T Consensus 308 ~~~~yda~~~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~~ 385 (386)
T 3sg0_A 308 GVHLWDSMTLVENAIPAALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFRLK 385 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEEEec
Confidence 99999999999999999943 2478999999999 899999999999776552 35688999999988754
No 35
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.95 E-value=7.9e-27 Score=246.69 Aligned_cols=285 Identities=13% Similarity=0.096 Sum_probs=229.0
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTV 81 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~i 81 (720)
+|+++++|++|||+.+|..+.++++++...++|+|+++.++. ...++++||+.+++..+++.+++++.+.+|++|++
T Consensus 69 ~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~ 145 (385)
T 1pea_A 69 DFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVF 145 (385)
T ss_dssp HHHHTTCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEE
T ss_pred HHHhhCCcEEEECCCchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEE
Confidence 466568999999999988888999999999999999876421 12468999999999999999999999989999999
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCC--CCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLALPH--FPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
|+.++.++... .+.+++.+++.|++++....++. +.. ++.+.++++++.++|+|++.++...+..+++++++.|+.
T Consensus 146 i~~~~~~~~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~-d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~ 223 (385)
T 1pea_A 146 IGSDYIYPRES-NHVMRHLYRQHGGTVLEEIYIPLYPSDD-DLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGD 223 (385)
T ss_dssp EEESSHHHHHH-HHHHHHHHHHTTCEEEEEEEECSSCCHH-HHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCS
T ss_pred EeCCChHHHHH-HHHHHHHHHHcCCEEEEEEeecCCCCcc-hHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCC
Confidence 99876555444 78999999999999887665554 333 899999999988999999988888999999999999997
Q ss_pred CCCeEEEEeCcccccccccCcchhhhccccEEEEecCC-CCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHH
Q 043468 160 EKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFP-EDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAV 238 (720)
Q Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav 238 (720)
++.+.++..+ +... . +........+|++...++.. ..+|..++|.++|+++++... .|+.+++.+||++
T Consensus 224 ~~~~~~~~~~-~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~-------~~~~~~~~~yda~ 293 (385)
T 1pea_A 224 GRRPPIASLT-TSEA-E-VAKMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENA-------TITAWAEAAYWQT 293 (385)
T ss_dssp SCCCCEEESS-CCHH-H-HTTSCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTC-------CCCHHHHHHHHHH
T ss_pred cCCceEEecc-cchH-H-HHhcCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCC-------CCChHHHHHHHHH
Confidence 5445555443 3321 1 11112246789887765543 346889999999999886420 4677899999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEe-ecCceEEEEEE
Q 043468 239 WSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINL-MGKSYRELGFW 301 (720)
Q Consensus 239 ~~~a~al~~~~~~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~-~~~~~~~v~~w 301 (720)
+++++|++++++.+++.+.++|++++|+|++|+++|+++++.....+.|.++ ++|+++.+...
T Consensus 294 ~~~~~Al~~ag~~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 294 LLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 9999999999988899999999999999999999999865554567789999 78888887443
No 36
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.92 E-value=2.3e-25 Score=228.07 Aligned_cols=249 Identities=20% Similarity=0.332 Sum_probs=173.3
Q ss_pred CCCCCeEEeecCCCccccceEeeec--cCCCceeEEEEeHHHHHHHHHhCCCccceEEecC---------CCCHHHHHHH
Q 043468 344 AKDQPLRIGVPIGSEFQQYVNVEYD--ELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPF---------NGSYDDLVKQ 412 (720)
Q Consensus 344 ~~~~~l~v~~~~~~p~~p~~~~~~~--~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~---------~~~~~~~~~~ 412 (720)
..+++|+|++... +||.+.+.. ...+++++.|+++||++++++++|+++++...+. +++|++++.+
T Consensus 10 ~~~~~l~V~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 86 (312)
T 1yae_A 10 LSNRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRE 86 (312)
T ss_dssp TCSCEEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHH
T ss_pred hcCceEEEEEecc---CCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHH
Confidence 4578999999654 556665410 0112448999999999999999999988876543 4689999999
Q ss_pred HHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc-CCCcccccccccchhHHHHHHHHHHHHhhheeeeecc
Q 043468 413 LYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK-SGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERN 491 (720)
Q Consensus 413 l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~-~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~ 491 (720)
|.+|++|++++++++|++|.+.++||.||+..+.+++++++. ....++.++.||+..-+
T Consensus 87 l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~p~-------------------- 146 (312)
T 1yae_A 87 LIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPR-------------------- 146 (312)
T ss_dssp HHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------------------
T ss_pred HhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccCCc--------------------
Confidence 999999999989999999999999999999999999999886 56788999999981111
Q ss_pred cCCCccCccccccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhc-CC
Q 043468 492 HWPELTGSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSS-NA 570 (720)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~-~~ 570 (720)
|.+.+...|++++||... ++
T Consensus 147 -----------------------------------------------------------tv~~~~~~i~~~~dL~g~~~~ 167 (312)
T 1yae_A 147 -----------------------------------------------------------GSERMESPIDSADDLAKQTKI 167 (312)
T ss_dssp -------------------------------------------------------------------CCSHHHHHTCSSS
T ss_pred -----------------------------------------------------------ccccccCCCCCHHHHhhccCc
Confidence 112223345555555432 23
Q ss_pred eEEEec---------------------------------CcchHHHHHhcCcccEEEechhHHHHHHHhcCCCcEeeCCe
Q 043468 571 IIGYSR---------------------------------CLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPT 617 (720)
Q Consensus 571 ~~~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 617 (720)
++|+.. +.++++++|.+|+ |+++.+...+.+++++.|+ +.+++..
T Consensus 168 ~vg~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-Da~i~~~~~~~~~~~~~~~-l~~~~~~ 245 (312)
T 1yae_A 168 EYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCN-LTQIGGL 245 (312)
T ss_dssp EEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-EEEEEEHHHHHHHHTTCTT-EEEESSC
T ss_pred eEEEEeCChHHHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-cEEEeccHHHHHHHhcCCC-EEEeccc
Confidence 444321 2356788889999 9999999999999888776 8888888
Q ss_pred eecCceeeEecCCCCChHHHHHHHhcccccCcHHHHHHHhcCCCCCCCCCCCCCCCCCCccc
Q 043468 618 YKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIASEKCMEVNLHDDDDISSLSP 679 (720)
Q Consensus 618 ~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 679 (720)
+...+++++++|++|+++.||++|.+|.++|.++++.++|+....|... ...++..+++
T Consensus 246 ~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~~~---~~~~~~~~~~ 304 (312)
T 1yae_A 246 IDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEE---ESKEASALGV 304 (312)
T ss_dssp SSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCCSCC----------------
T ss_pred ccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCCCCCCCC---CCccchhhhh
Confidence 8888999999999999999999999999999999999999998899872 3334444444
No 37
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.91 E-value=3.8e-24 Score=212.91 Aligned_cols=242 Identities=19% Similarity=0.321 Sum_probs=172.8
Q ss_pred CCCeEEeecCCCccccceEeeec--cCCCceeEEEEeHHHHHHHHHhCCCccceEEecC---------CCCHHHHHHHHH
Q 043468 346 DQPLRIGVPIGSEFQQYVNVEYD--ELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPF---------NGSYDDLVKQLY 414 (720)
Q Consensus 346 ~~~l~v~~~~~~p~~p~~~~~~~--~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~---------~~~~~~~~~~l~ 414 (720)
+++|+|++...| ||.+.+.+ +..+++++.|+++||++++++++|++++++.+|. +++|.+++.+|.
T Consensus 3 ~~~l~v~~~~~~---P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~ 79 (259)
T 3g3k_A 3 NRSLIVTTILEE---PYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELI 79 (259)
T ss_dssp CCCEEEEECCBT---TTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CcEEEEEEecCC---CeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHh
Confidence 578999996654 55665432 1223569999999999999999999988888764 468999999999
Q ss_pred hCCccEEeeeeeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCC
Q 043468 415 LNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWP 494 (720)
Q Consensus 415 ~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~ 494 (720)
+|++|++++++++|++|.+.++||.||+..+.+++++++....++ .
T Consensus 80 ~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~i~~~----------------------------------~ 125 (259)
T 3g3k_A 80 DHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTPIDSA----------------------------------D 125 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSSCCSH----------------------------------H
T ss_pred cCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCccccCH----------------------------------H
Confidence 999999998999999999999999999999999999987422211 1
Q ss_pred CccCccccccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHh---hhcCCe
Q 043468 495 ELTGSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETL---QSSNAI 571 (720)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl---~~~~~~ 571 (720)
++.++....+.. ...+.....+.. ..+...+++ ...+..
T Consensus 126 dL~g~~~~~ig~----------------------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 167 (259)
T 3g3k_A 126 DLAKQTKIEYGA----------------------------------VEDGATMTFFKR----SKISTYDKMWAFMSSRRQ 167 (259)
T ss_dssp HHHTCSSSEEEE----------------------------------ETTSHHHHHHHH----CCSHHHHHHHHHHHHTHH
T ss_pred HhccCCCceEEE----------------------------------ecCcHHHHHHhh----ccchhHHHHHHHHHhcCC
Confidence 111110000000 000000000100 000111110 000111
Q ss_pred EEEecCcchHHHHHhcCcccEEEechhHHHHHHHhcCCCcEeeCCeeecCceeeEecCCCCChHHHHHHHhcccccCcHH
Q 043468 572 IGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLR 651 (720)
Q Consensus 572 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~~ 651 (720)
+....+.++++++|.+|+ |+++.+...+.++.++.|+ +.+++..+...+++++++|++|+++.||++|.+|.++|.++
T Consensus 168 ~~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~ 245 (259)
T 3g3k_A 168 SVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCN-LTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLH 245 (259)
T ss_dssp HHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTT-EEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CH
T ss_pred CcccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCce-EEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHH
Confidence 222344578899999999 9999999999888888776 88888888888999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCC
Q 043468 652 ELETSMIASEKCM 664 (720)
Q Consensus 652 ~~~~~~~~~~~~~ 664 (720)
+|.++|+...+|+
T Consensus 246 ~i~~kw~~~~~c~ 258 (259)
T 3g3k_A 246 MMKEKWWRGNGCP 258 (259)
T ss_dssp HHHHHHHCC--CC
T ss_pred HHHHhhcCCCCCC
Confidence 9999999987886
No 38
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.90 E-value=5.3e-24 Score=215.25 Aligned_cols=237 Identities=15% Similarity=0.257 Sum_probs=167.5
Q ss_pred CCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecC---------C----CCHHHHHHH
Q 043468 346 DQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPF---------N----GSYDDLVKQ 412 (720)
Q Consensus 346 ~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~---------~----~~~~~~~~~ 412 (720)
.+.++|++ ++.|+||.+.+.++ ++.|+++||+++|++++|+++++..++. + ++|++++++
T Consensus 40 ~~~l~vg~--~~~~~P~~~~~~~g-----~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~ 112 (292)
T 1pb7_A 40 KKVICTGP--NDTSPGSPRHTVPQ-----CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGE 112 (292)
T ss_dssp CCEEEEEE--C--------CEEEE-----EEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHH
T ss_pred cceeeccc--CCCCCCcccccccc-----CcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHH
Confidence 36778877 45566666655443 8999999999999999999988887642 1 379999999
Q ss_pred HHhCCccEEeeeeeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeeccc
Q 043468 413 LYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNH 492 (720)
Q Consensus 413 l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~ 492 (720)
|.+|++|++++++++|++|.+.++||.||+..+.+++++++.....+
T Consensus 113 l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~i~~~--------------------------------- 159 (292)
T 1pb7_A 113 LLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGI--------------------------------- 159 (292)
T ss_dssp HHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCCCCST---------------------------------
T ss_pred HHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcCCCCC---------------------------------
Confidence 99999999999999999999999999999999999999987532211
Q ss_pred CCCcc--CccccccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCC
Q 043468 493 WPELT--GSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNA 570 (720)
Q Consensus 493 ~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~ 570 (720)
.++. +........ . ... +.....+...+. +.++.. ..
T Consensus 160 -~dl~~~g~~~~~~~~------~-----~~~------------------~~~~~~~~~~~~----------~~~~~~-~~ 198 (292)
T 1pb7_A 160 -NDPRLRNPSDKFIYA------T-----VKQ------------------SSVDIYFRRQVE----------LSTMYR-HM 198 (292)
T ss_dssp -TCHHHHSCBTTBCEE------C-----BTT------------------SHHHHHHHTCGG----------GHHHHH-HH
T ss_pred -cCccccCcccceEEE------E-----EcC------------------chHHHHhhhccc----------HHHHHH-HH
Confidence 1111 100000000 0 000 000000000000 000000 00
Q ss_pred eEEEecCcchHHHHHhcCcccEEEechhHHHHHHHhcCCCcEeeCCeeecCceeeEecCCCCChHHHHHHHhcccccCcH
Q 043468 571 IIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKL 650 (720)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~ 650 (720)
++....+.++++++|.+|++|+++.+...+.+++++.|+ +.+++..+...+++++++|++++++.||++|.+++++|.+
T Consensus 199 ~~~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~ 277 (292)
T 1pb7_A 199 EKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD-LVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFM 277 (292)
T ss_dssp TTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-EEECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHH
T ss_pred HhhcCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCCC-EEEcCccccCCceEEEEeCCCHHHHHHHHHHHHHHhCCCH
Confidence 011123457899999999999999999999999988886 8888888888899999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCC
Q 043468 651 RELETSMIASEKCM 664 (720)
Q Consensus 651 ~~~~~~~~~~~~~~ 664 (720)
+++.++|+...+|+
T Consensus 278 ~~l~~kw~~~~~c~ 291 (292)
T 1pb7_A 278 EDLDKTWVRYQECD 291 (292)
T ss_dssp HHHHHHHTSSSCCC
T ss_pred HHHHHhhCCCCCCC
Confidence 99999999988886
No 39
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.90 E-value=7e-24 Score=214.80 Aligned_cols=210 Identities=20% Similarity=0.294 Sum_probs=153.3
Q ss_pred eEEEEeHHHHHHHHHhCCCccceEEec-------CCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceE
Q 043468 375 YFGGFSIELFKALVEKLPFYLPYNFIP-------FNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLV 447 (720)
Q Consensus 375 ~~~G~~~dl~~~la~~l~~~~~~~~~~-------~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~ 447 (720)
++.|+++||+++|++++|+++++..++ .+++|++++++|.+|++|++++++++|++|.+.++||.||+..+..
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~ 146 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG 146 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceE
Confidence 489999999999999999998887664 2457999999999999999999999999999999999999999999
Q ss_pred EEEeccc-CCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCcc------CccccccchhhhhhhhccCCccc
Q 043468 448 MIFPVQK-SGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELT------GSALHQTGTFFWLSFNLHGEKLH 520 (720)
Q Consensus 448 ~~v~~~~-~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~ 520 (720)
++++++. ....+ .++. +...-.. +
T Consensus 147 i~~~~~~~~i~~~----------------------------------~dL~~~~~~~g~~vg~~---------------~ 177 (294)
T 2rc8_A 147 ILVRTRGTELSGI----------------------------------HDPKLHHPSQGFRFGTV---------------R 177 (294)
T ss_dssp EEEETTSCCCCST----------------------------------TCHHHHSCCTTCCEECB---------------T
T ss_pred EEEECCCCCcCCh----------------------------------hhhhhcCcccCeEEEEE---------------c
Confidence 9999874 22211 1111 1100000 0
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHHHHhc--CcccEEEechh
Q 043468 521 SNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDLKS--RKTGAVFLEVA 598 (720)
Q Consensus 521 ~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 598 (720)
. +.+...+...+ +... ..+.. ....+.++++++|.+ |++|+++.+..
T Consensus 178 g------------------s~~~~~l~~~~--~~~~------~~i~~-----~~~~~~~~~~~~l~~~~GrvDa~i~~~~ 226 (294)
T 2rc8_A 178 E------------------SSAEDYVRQSF--PEMH------EYMRR-----YNVPATPDGVQYLKNDPEKLDAFIMDKA 226 (294)
T ss_dssp T------------------SHHHHHHHHHC--HHHH------HHHGG-----GCBSSHHHHHHHHHSSSCCCSEEEEEHH
T ss_pred C------------------ChHHHHHHHHH--HHHH------HHHHH-----hcCCCHHHHHHHHHhccCceeEEEecHH
Confidence 0 00000111000 0000 00000 001234678889999 99999999999
Q ss_pred HHHHHHHhc--CCCcEeeCCeeecCceeeEecCCCCChHHHHHHHhcccccCcHHHHHHHhcCCCCCCC
Q 043468 599 EAKIFLAKY--CKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIASEKCME 665 (720)
Q Consensus 599 ~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~~~~~~~~~~~~~~~~ 665 (720)
.+.+++++. |+ +.+++..+...+++++++|++++++.||++|.+++++|.++++.++|+....|.+
T Consensus 227 ~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~~~c~~ 294 (294)
T 2rc8_A 227 LLDYEVSIDADCK-LLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKVVPCGK 294 (294)
T ss_dssp HHHHHHHTCSSSC-EEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHTTHHHHHHHHHCCC-----
T ss_pred HHHHHHhhCCCCC-EEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhCCCHHHHHHhhcCCCCCCC
Confidence 999998864 65 8888888888899999999999999999999999999999999999999878863
No 40
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.90 E-value=1.4e-23 Score=206.47 Aligned_cols=226 Identities=19% Similarity=0.225 Sum_probs=164.4
Q ss_pred CCCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEe
Q 043468 344 AKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVV 422 (720)
Q Consensus 344 ~~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 422 (720)
.+.++|+||+ .+.||||.+.+.++ ++.|+++||+++|+++| |++++++..+ |++++..|.+|++|+++
T Consensus 6 ~~~~tl~vg~--~~~~pP~~~~d~~G-----~~~G~~vdl~~~ia~~l~g~~~~~~~~~----~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 6 QKVQTITVGT--GTQFPNVCFLDENG-----KLTGYDVELVKEIDKRLPGYKFKFKTMD----FSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp --CEEEEEEE--CSEETTTEEECTTS-----CEESHHHHHHHHHHHTCTTEEEEEEECC----GGGHHHHHHTTSCSEEC
T ss_pred ccCCeEEEEE--CCCCCCeEEECCCC-----cEEEhHHHHHHHHHHhccCCeEEEEECC----HHHHHHHHHCCCCCEec
Confidence 4567899999 57789998876554 89999999999999998 8887776654 89999999999999999
Q ss_pred eeeeeeccceeeeeecccccccceEEEE-eccc-CCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcc
Q 043468 423 GDVAIVARRCQYADFTHPYTESGLVMIF-PVQK-SGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSA 500 (720)
Q Consensus 423 ~~~~~t~~r~~~~~fs~p~~~~~~~~~v-~~~~-~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~ 500 (720)
++++.|++|.+.++||.|++.....+++ ++.. ...++ .++.|+.
T Consensus 75 ~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~----------------------------------~dL~g~~ 120 (243)
T 4gvo_A 75 HQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINST----------------------------------KDLAGKR 120 (243)
T ss_dssp SCCBCCHHHHHHSEECSSCCEECCEEEEEETTCCSCSSG----------------------------------GGGTTCE
T ss_pred ccCCCCHHHhhhhhhhhhhcccccceEEEeccccccCch----------------------------------HHhcCCe
Confidence 9999999999999999998876655544 4433 11111 2233321
Q ss_pred ccccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEE-ecCcc
Q 043468 501 LHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGY-SRCLG 579 (720)
Q Consensus 501 ~~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~-~~~~~ 579 (720)
.-... .+.+...+..+. +-......+.+ ..+.+
T Consensus 121 v~v~~---------------------------------gs~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 154 (243)
T 4gvo_A 121 VITSA---------------------------------TSNGALVLKKIN-------------EEQGNNFEIAYEGQGSN 154 (243)
T ss_dssp EEECT---------------------------------TCHHHHHHHHHH-------------HHTTSCSEEEECCSGGG
T ss_pred EEEec---------------------------------CchHHHHHHHHH-------------HhccccceeccccCChH
Confidence 10000 000000111000 00001122222 22357
Q ss_pred hHHHHHhcCcccEEEechhHHHHHHHhcCCCcEeeCCeeecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhc
Q 043468 580 DYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMI 658 (720)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~ 658 (720)
+++++|.+|++|+++.+...+.+..++....+.++++.+...+++++++|++| +++.||++|.+|+++|.+++|.+|||
T Consensus 155 ~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~ 234 (243)
T 4gvo_A 155 DTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWL 234 (243)
T ss_dssp SHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHC
Confidence 88999999999999999998888887764447778888888899999999988 99999999999999999999999999
Q ss_pred CC
Q 043468 659 AS 660 (720)
Q Consensus 659 ~~ 660 (720)
+.
T Consensus 235 g~ 236 (243)
T 4gvo_A 235 GA 236 (243)
T ss_dssp CG
T ss_pred CC
Confidence 75
No 41
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.89 E-value=4.1e-23 Score=207.99 Aligned_cols=245 Identities=20% Similarity=0.287 Sum_probs=167.1
Q ss_pred CCCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEec-------CCCCHHHHHHHHHhC
Q 043468 344 AKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIP-------FNGSYDDLVKQLYLN 416 (720)
Q Consensus 344 ~~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~-------~~~~~~~~~~~l~~g 416 (720)
..+++||||++..++|++|.... ++..+..++.|+++|+++++++++|+++++...+ .+++|++++++|.+|
T Consensus 26 ~~~~~lrvgv~~~~~~~~~~~~~-~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g 104 (284)
T 2a5s_A 26 LTETCVRNTVPCRKFVKINNSTN-EGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQ 104 (284)
T ss_dssp C-CCCCTTCEEEEEEEESSSSSS-CEEEEEEEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTT
T ss_pred CCCcccccccccccccccccccc-CCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcC
Confidence 45666666666555555442211 1111234789999999999999999998887665 245799999999999
Q ss_pred CccEEeeeeeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCc
Q 043468 417 NFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPEL 496 (720)
Q Consensus 417 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~ 496 (720)
++|++++++++|++|.+.++||.||+..+.+++++++.....+.. .. .....++
T Consensus 105 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~d----l~----------------------~~~~~~l 158 (284)
T 2a5s_A 105 RAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSD----KK----------------------FQRPHDY 158 (284)
T ss_dssp SCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCCCCSTTS----HH----------------------HHSGGGS
T ss_pred CcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCcccccccc----cc----------------------cCChhHc
Confidence 999999999999999999999999999999999998753221100 00 0000011
Q ss_pred c-CccccccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChH-HhhhcCCeEEE
Q 043468 497 T-GSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIE-TLQSSNAIIGY 574 (720)
Q Consensus 497 ~-~~~~~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~-dl~~~~~~~~~ 574 (720)
. +.. +. ++-..++...+...+ .... .+... .
T Consensus 159 ~~~~~---vg------------------------------~v~~~s~~~~l~~~~---------~~~~~~i~~~-----~ 191 (284)
T 2a5s_A 159 SPPFR---FG------------------------------TVPNGSTERNIRNNY---------PYMHQYMTRF-----N 191 (284)
T ss_dssp SSCCC---EE------------------------------CCTTSHHHHHHHTTC---------HHHHHHHGGG-----C
T ss_pred CCCce---EE------------------------------EEeCCchHHHHHHHH---------HHHHHHHHhc-----c
Confidence 1 000 00 000000111111000 0000 01000 0
Q ss_pred ecCcchHHHHHhcCcccEEEechhHHHHHHHhc--CCCcEeeC--CeeecCceeeEecCCCCChHHHHHHHhcccccCcH
Q 043468 575 SRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKY--CKGFTVAG--PTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKL 650 (720)
Q Consensus 575 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~--~~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~ 650 (720)
..+.++++++|.+|++|+++.+...+.+++++. |+ +..++ ..+...+++++++|++++++.||++|.++.++|.+
T Consensus 192 ~~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~ 270 (284)
T 2a5s_A 192 QRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCK-LVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEM 270 (284)
T ss_dssp CSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSC-EEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCC-EEEeCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCChH
Confidence 123478899999999999999999999998876 65 76663 56677889999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCC
Q 043468 651 RELETSMIASEKCM 664 (720)
Q Consensus 651 ~~~~~~~~~~~~~~ 664 (720)
+++.++|+.. .|.
T Consensus 271 ~~i~~kw~~~-~c~ 283 (284)
T 2a5s_A 271 EELETLWLTG-ICH 283 (284)
T ss_dssp HHHHHHHTCC-CCC
T ss_pred HHHHHHhhhc-cCC
Confidence 9999999976 675
No 42
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.89 E-value=8.4e-23 Score=210.17 Aligned_cols=267 Identities=10% Similarity=0.029 Sum_probs=205.2
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhh-ccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIA-SKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVT 80 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~-~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ 80 (720)
+++.+++|.+||||.+|+.+.++++.. +...+|+++.++++.. . ..+++||+.+++..++.++++++...|+++++
T Consensus 52 ~~~~~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~~-~--~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ 128 (327)
T 3ckm_A 52 AQAKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNS-R--AIPQLCYYGLSPEDEAESAANKMWNDGVRNPL 128 (327)
T ss_dssp HHHHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTC-C--CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCE
T ss_pred HHHHHcCCeEEEEccccccchhhHHHHHhccCceEeccCcCccc-c--cCCCeEEEecChHHHHHHHHHHHHhcCCeeEE
Confidence 356689999999999998888877655 4556666655443332 2 34799999999999999999999888999999
Q ss_pred EEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 81 VIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 81 ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
++++++++|... .+.+++.+++.|++|+..+.++.. +....+.+++.+++|+|++...+.++..+++++++.|+
T Consensus 129 ii~~~~~yg~~~-~~~f~~~~~~~Gg~vv~~~~~~~~---~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~-- 202 (327)
T 3ckm_A 129 VAMPQNDLGQRV-GNAFNVRWQQLAGTDANIRYYNLP---ADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVP-- 202 (327)
T ss_dssp EEEESSHHHHHH-HHHHHHHHHHHHSSCCEEEEESST---THHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCT--
T ss_pred EEecCChHHHHH-HHHHHHHHHHCCCeEEEEEECCCC---chhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhc--
Confidence 999999988655 999999999999999999988754 45567788899999999999999999999999999998
Q ss_pred CCeEEEEeCcccccccccCcchhhhccccEEEEec-C-CCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHH
Q 043468 161 KDYIWITTDAFTSLVHSINTSSISSMQGILGVRSH-F-PEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAV 238 (720)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav 238 (720)
+..++.++.+...............+|+...... . ....|..++|.++|.++++. . .+.+.+|||+
T Consensus 203 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---------~--~~~AlgyDA~ 270 (327)
T 3ckm_A 203 -NLAIYASSRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQL---------M--RLYAMGADAW 270 (327)
T ss_dssp -TCEEEECGGGCCHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHHH---------H--HHHHHHHHHH
T ss_pred -cCCEEeeeccccccchhcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcCC---------C--chHHHHHHHH
Confidence 5567777665543221122222346677644432 2 34468888998888877654 2 2567899999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeecCceEEEEE
Q 043468 239 WSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGF 300 (720)
Q Consensus 239 ~~~a~al~~~~~~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~v~~ 300 (720)
.++.++.+. +.+....|+|++|.++||++|+.. ..+.+.++++|+++++..
T Consensus 271 ~l~~~l~~~----------~~~~~~~f~G~tG~i~fd~~G~~~-r~l~~~~~~~G~~vpv~d 321 (327)
T 3ckm_A 271 LLINQFNEL----------RQVPGYRLSGLTGILSADTNCNVE-RDMTWYQYQDGAIVPVVD 321 (327)
T ss_dssp HHHHTHHHH----------HHSTTCCEEETTEEEEECTTCBEE-EECEEEEEETTEEEECC-
T ss_pred HHHHHHHHh----------cCCCCCCceeceEEEEECCCCCCc-cccEEEEEECCEEEEccc
Confidence 887654332 344556899999999999999764 778899999999888643
No 43
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.88 E-value=8.8e-23 Score=207.36 Aligned_cols=264 Identities=10% Similarity=0.041 Sum_probs=201.9
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhh-ccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIA-SKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVT 80 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~-~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ 80 (720)
+|+ +++|.+||||.+|+.+.++++.+ ...++|+|++++++. .....+.|.||+. +..+++++++++...|.++++
T Consensus 51 ~l~-~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~--~~~~~~~~a~~a~~~g~k~va 126 (325)
T 2h4a_A 51 QAK-QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLS--PEDEAESAANKMWNDGVRNPL 126 (325)
T ss_dssp HHH-HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCC--HHHHHHHHHHHHHHTTCCSCE
T ss_pred HHH-HCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECC--HHHHHHHHHHHHHHcCCCeEE
Confidence 466 68999999999999999999999 789999999877543 2333345666654 455789999999888999999
Q ss_pred EEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 81 VIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 81 ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
||++++++|... .+.|++.+++.|++|+..+.++.. . |+.++++++ .+++|+|++.+++.++..+.++++..+.
T Consensus 127 il~~~~~yG~~~-~~~F~~~~~~~Gg~vv~~~~y~~~-~-d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~-- 200 (325)
T 2h4a_A 127 VAMPQNDLGQRV-GNAFNVRWQQLAGTDANIRYYNLP-A-DVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVP-- 200 (325)
T ss_dssp EEEESSHHHHHH-HHHHHHHHHHHHSSCCEEEEESST-T-HHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCT--
T ss_pred EEEcCCcHHHHH-HHHHHHHHHHcCCCcceeEecCCH-H-HHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCC--
Confidence 999988888554 999999999999999999999875 4 999999999 4899999999999999888888877655
Q ss_pred CCeEEEEeCcccccccccCcchhhhccccEEEE-ecCC-CCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHH
Q 043468 161 KDYIWITTDAFTSLVHSINTSSISSMQGILGVR-SHFP-EDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAV 238 (720)
Q Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav 238 (720)
+.+.+.++.+..............++|++... ++.. +..|..++|.+.|.+.+ .|....+.+|||+
T Consensus 201 -~~pl~~~~~~~~~s~~~~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~-----------~~~rl~AlgyDA~ 268 (325)
T 2h4a_A 201 -NLAIYASSRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY-----------QLMRLYAMGADAW 268 (325)
T ss_dssp -TCEEEECGGGCCHHHHTCHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH-----------HHHHHHHHHHHHH
T ss_pred -CCCEEEeccccccCCCCCchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc-----------chHHHHHHHHHHH
Confidence 66778787776111112223346789997544 2333 33567777776654332 2345678999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeecCceEEE
Q 043468 239 WSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYREL 298 (720)
Q Consensus 239 ~~~a~al~~~~~~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~v 298 (720)
.++.++ .+ .+.+.+..|+|++|.++||++|+.. ..+.+.++++|+++.+
T Consensus 269 ~l~~~l-~~---------l~~~~~~~~~G~tG~l~~~~~g~~~-R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 269 LLINQF-NE---------LRQVPGYRLSGLTGILSADTNCNVE-RDMTWYQYQDGAIVPV 317 (325)
T ss_dssp HHHHTH-HH---------HHHSTTCCEEETTEEEEECTTCBEE-EECEEEEEETTEEEEC
T ss_pred HHHHHH-HH---------HhhCCCCeeccCceeEEECCCCeEE-EeechhhccCCeEEEe
Confidence 987664 22 1224456899999999999999884 8889999999987775
No 44
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.88 E-value=6.5e-23 Score=201.66 Aligned_cols=226 Identities=14% Similarity=0.181 Sum_probs=165.4
Q ss_pred CCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeee
Q 043468 346 DQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDV 425 (720)
Q Consensus 346 ~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 425 (720)
.+.|+||+ .+.|+||.+... .++++++.||++||++++++++|++++++..+ |.+++.+|.+|++|++++++
T Consensus 11 ~g~L~Vg~--~~~~pP~~~~~~--~d~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~----~~~~~~~l~~g~~d~~~~~~ 82 (243)
T 4h5g_A 11 KGKLVVAT--SPDYAPFEFQSL--VDGKNQVVGADIDMAQAIADELGVKLEILSMS----FDNVLTSLQTGKADLAVAGI 82 (243)
T ss_dssp HTEEEEEE--CCCBTTTBEEEE--ETTEEEEESHHHHHHHHHHHHHTSEEEEEECC----GGGHHHHHHTTSCSEECSSC
T ss_pred CCEEEEEE--CCCCCCcEeeec--cCCCCcEEEeHHHHHHHHHHHhCCceEEeccc----HHHHHHHHHcCCCCcccccc
Confidence 46899999 577899987532 12356899999999999999999987776544 89999999999999999999
Q ss_pred eeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCccccccc
Q 043468 426 AIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTG 505 (720)
Q Consensus 426 ~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 505 (720)
+.|++|.+.++||.||+..+.++++++.+..... ...++.++..-...
T Consensus 83 ~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~~~~--------------------------------~~~dl~g~~i~v~~ 130 (243)
T 4h5g_A 83 SATDERKEVFDFSIPYYENKISFLVHKADVEKYK--------------------------------DLTSLESANIAAQK 130 (243)
T ss_dssp BCCHHHHTTEEECSCSBCCCEEEEEEGGGTTTCC--------------------------------SHHHHHTSEEEEET
T ss_pred cCChhHccEEEccCccccCccccccccccccccc--------------------------------ccccCCCCEEEecC
Confidence 9999999999999999999999999887511100 00111111000000
Q ss_pred hhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHHHH
Q 043468 506 TFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDL 585 (720)
Q Consensus 506 ~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~~l 585 (720)
.+.|...+.. . ....++....+.++++++|
T Consensus 131 ---------------------------------g~~~~~~l~~----------------~-~~~~~i~~~~~~~~~~~~l 160 (243)
T 4h5g_A 131 ---------------------------------GTVPESMVKE----------------Q-LPKAQLTSLTNMGEAVNEL 160 (243)
T ss_dssp ---------------------------------TSHHHHHHHH----------------H-CTTSEEEEESCHHHHHHHH
T ss_pred ---------------------------------CcHHHHHHHH----------------h-cccceeEEeCCHHHHHHHH
Confidence 0000000000 0 0123555566678899999
Q ss_pred hcCcccEEEechhHHHHHHHhcCC-CcEe-eCCeeecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhcCCC
Q 043468 586 KSRKTGAVFLEVAEAKIFLAKYCK-GFTV-AGPTYKVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMIASE 661 (720)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-~~~~~~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~~~~ 661 (720)
.+|++|+++.+...+.+++.+... .+.. ........+++++++|++| +++.||++|.+|+++|.+++|.+||+.-.
T Consensus 161 ~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~~~ 239 (243)
T 4h5g_A 161 QAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSDDLKEVVDKVIQKLKDEGTYQSYLEKAASLT 239 (243)
T ss_dssp HHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSC
T ss_pred HcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCHHHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 999999999999998888877633 1222 2334455678999999998 99999999999999999999999998753
No 45
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.87 E-value=1.1e-21 Score=195.92 Aligned_cols=246 Identities=20% Similarity=0.277 Sum_probs=168.1
Q ss_pred CCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecC--------CCCHHHHHHHHHhCC
Q 043468 346 DQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPF--------NGSYDDLVKQLYLNN 417 (720)
Q Consensus 346 ~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~--------~~~~~~~~~~l~~g~ 417 (720)
+++|+|++.+. +||.+.+.+..+..+++.|+++|+++++++++|++++++..+. +++|++++++|.+|+
T Consensus 2 ~~~l~v~~~~~---pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g~ 78 (265)
T 2v3u_A 2 GVVLRVVTVLE---EPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKR 78 (265)
T ss_dssp CCEEEEEECCB---TTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTS
T ss_pred CeEEEEEEecc---CCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcCC
Confidence 67899999654 5667765542122258999999999999999999988776542 357999999999999
Q ss_pred ccEEeeeeeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCcc
Q 043468 418 FAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELT 497 (720)
Q Consensus 418 ~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~ 497 (720)
+|+++++++.|++|.+.++||.||+..+.+++++++....++ .++.
T Consensus 79 ~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~~~----------------------------------~dL~ 124 (265)
T 2v3u_A 79 ADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSL----------------------------------QDLS 124 (265)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCCCCSH----------------------------------HHHH
T ss_pred cCeEEeeeEeehhhhccccccceeeeccEEEEEECCCCccch----------------------------------hhhh
Confidence 999998999999999999999999999999999987532211 1111
Q ss_pred CccccccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCC-CCC-ChH----HhhhcCCe
Q 043468 498 GSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEP-TVN-NIE----TLQSSNAI 571 (720)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~-~i~-s~~----dl~~~~~~ 571 (720)
++..-. ..+.+...+..++......+ ... ... .+...+-+
T Consensus 125 ~~v~v~----------------------------------~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 170 (265)
T 2v3u_A 125 KQTDIP----------------------------------YGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGS 170 (265)
T ss_dssp TCSSSC----------------------------------EECBTTSHHHHHHHHHHTCTTCSCTHHHHHHHHHCC----
T ss_pred hhhcEE----------------------------------EEEeccHHHHHHHHhcCCCcccccHHHHHHHHHHHhhcCc
Confidence 000000 00000011111111110000 000 000 11100111
Q ss_pred EEEecCcchHHHHHhcCcccEEEechhHHHHHHHhc--CCCcEeeCCeeecCceeeEecCCCCChHHHHHHHhcccccCc
Q 043468 572 IGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKY--CKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGK 649 (720)
Q Consensus 572 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~ 649 (720)
+....+.++++++|.+|++ +++.+...+.+++++. |. +.+++..+...+++++++|++|+++.||++|.+|.++|.
T Consensus 171 ~~~~~~~~~~~~~l~~G~~-a~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~ 248 (265)
T 2v3u_A 171 ENNVLESQAGIQKVKYGNY-AFVWDAAVLEYVAINDPDCS-FYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGD 248 (265)
T ss_dssp -CCBSSHHHHHHHHHHSSC-EEEEEHHHHHHHHHHCTTCC-EEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTH
T ss_pred ccccCCHHHHHHHHHcCCE-EEEEcchHHHHHHhcCCCcc-EEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCCh
Confidence 2233446789999999999 8899988888888764 55 888887777888999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-CCC
Q 043468 650 LRELETSMIASE-KCM 664 (720)
Q Consensus 650 ~~~~~~~~~~~~-~~~ 664 (720)
++++.++|+... .|+
T Consensus 249 ~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 249 MDILKHKWWPKNGQCD 264 (265)
T ss_dssp HHHHHHHHCCCCCC--
T ss_pred HHHHHhhcCCCcCcCC
Confidence 999999999876 774
No 46
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.85 E-value=2.9e-21 Score=190.30 Aligned_cols=224 Identities=17% Similarity=0.226 Sum_probs=172.0
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeee
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGD 424 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 424 (720)
+.++|+|++. +.++||.+.+.++ ++.|+++|+++.+++++|+++++... +|.+++.+|.+|++|+++++
T Consensus 3 ~~~~l~v~~~--~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~~~~ 71 (245)
T 3k4u_A 3 LRGELRVGLE--PGYLPFEMKDKKG-----NVIGFDVDLAREMAKAMGVKLKLVPT----SWDGLIPGLVTEKFDIIISG 71 (245)
T ss_dssp CCSEEEEEEC--TTSTTTCEEETTT-----EEESHHHHHHHHHHHHHTCEEEEEEC----CGGGHHHHHHTTSCSEECSS
T ss_pred cCCeEEEEEC--CCcCCeeEECCCC-----CCccchHHHHHHHHHHhCCeEEEEEc----cHHHHHHHHhCCCcCEEEec
Confidence 3568999994 6788888875544 89999999999999999998777764 38999999999999999889
Q ss_pred eeeeccceeeeeecccccccceEEEEeccc--CCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCcc--Ccc
Q 043468 425 VAIVARRCQYADFTHPYTESGLVMIFPVQK--SGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELT--GSA 500 (720)
Q Consensus 425 ~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~--~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~--~~~ 500 (720)
+..+++|.+.+.||.|++....++++++.+ ...++ .++. +..
T Consensus 72 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~----------------------------------~dL~~~g~~ 117 (245)
T 3k4u_A 72 MTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSY----------------------------------KDLDKPELT 117 (245)
T ss_dssp CBCCHHHHTTSEECSCSEEECEEEEEETTTTTTCCSG----------------------------------GGGCCSSCE
T ss_pred CcCCHHHHhhcCcchhhheeceEEEEECCcccccCCH----------------------------------HHhccCCcE
Confidence 999999999999999999999999999883 11111 2222 110
Q ss_pred ccccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcch
Q 043468 501 LHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGD 580 (720)
Q Consensus 501 ~~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~ 580 (720)
.-... .+.|...|... ..+.++....+.++
T Consensus 118 i~v~~---------------------------------g~~~~~~l~~~-----------------~~~~~~~~~~~~~~ 147 (245)
T 3k4u_A 118 LVTKF---------------------------------GVSAEYAAKRL-----------------FKNAKLKTYDTEAE 147 (245)
T ss_dssp EEEET---------------------------------TSHHHHHHHHH-----------------CSSSEEEEESSHHH
T ss_pred EEEeC---------------------------------CcHHHHHHHhh-----------------CCcCCEEEeCCHHH
Confidence 00000 00011111000 01234555556788
Q ss_pred HHHHHhcCcccEEEechhHHHHHHHhc-CCCcEeeCCeeecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhc
Q 043468 581 YASDLKSRKTGAVFLEVAEAKIFLAKY-CKGFTVAGPTYKVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMI 658 (720)
Q Consensus 581 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~ 658 (720)
++++|.+|++|+++.+...+.+++++. ...+..++..+...+++++++|++| +++.||++|.++.++|.++++.++|+
T Consensus 148 ~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~ 227 (245)
T 3k4u_A 148 AVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWF 227 (245)
T ss_dssp HHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhc
Confidence 999999999999999999998887776 3446777777778889999999998 99999999999999999999999999
Q ss_pred CCCCC
Q 043468 659 ASEKC 663 (720)
Q Consensus 659 ~~~~~ 663 (720)
.....
T Consensus 228 ~~~~~ 232 (245)
T 3k4u_A 228 VDTKW 232 (245)
T ss_dssp TCCSG
T ss_pred Ccccc
Confidence 98633
No 47
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.85 E-value=8.4e-21 Score=187.42 Aligned_cols=222 Identities=18% Similarity=0.306 Sum_probs=172.1
Q ss_pred CCCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEee
Q 043468 344 AKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVG 423 (720)
Q Consensus 344 ~~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 423 (720)
...++|+|++. +.|+||.+. .++ ++.|+++|+++.+++++|++++++..+ |.+++.+|.+|++|++++
T Consensus 21 ~~~~~l~v~~~--~~~~P~~~~-~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D~~~~ 88 (249)
T 4f3p_A 21 SMAKELVVGTD--TSFMPFEFK-QGD-----KYVGFDLDLWAEIAKGAGWTYKIQPMD----FAGLIPALQTQNIDVALS 88 (249)
T ss_dssp ---CCEEEEEE--SCBTTTBEE-ETT-----EEESHHHHHHHHHHHHHTCCEEEEEEC----GGGHHHHHHTTSCSEEEE
T ss_pred ccCceEEEEeC--CCCCCeEEe-cCC-----eEEEEhHHHHHHHHHHcCCceEEEecC----HHHHHHHHHCCCCCEEEe
Confidence 46789999994 567788776 444 899999999999999999998877754 899999999999999988
Q ss_pred eeeeeccceeeeeecccccccceEEEEecccC-CCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcccc
Q 043468 424 DVAIVARRCQYADFTHPYTESGLVMIFPVQKS-GNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALH 502 (720)
Q Consensus 424 ~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~-~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 502 (720)
++..+++|.+.+.||.|++....++++++... ..++ .++.++..-
T Consensus 89 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~~----------------------------------~dL~g~~i~ 134 (249)
T 4f3p_A 89 GMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSI----------------------------------DDLNGKVIA 134 (249)
T ss_dssp EEECCHHHHTTEEECSCCEEEEEEEEEETTCCSCCSS----------------------------------GGGTTSEEE
T ss_pred ccccCHHHHcCcceecceeeccEEEEEECCCCCcCCh----------------------------------HHhCCCEEE
Confidence 99999999999999999999999999988752 2211 233332100
Q ss_pred ccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHH
Q 043468 503 QTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYA 582 (720)
Q Consensus 503 ~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~ 582 (720)
.... +.|...|... ..+.++....+.++++
T Consensus 135 v~~g---------------------------------~~~~~~l~~~-----------------~~~~~~~~~~~~~~~~ 164 (249)
T 4f3p_A 135 AKTG---------------------------------TATIDWIKAH-----------------LKPKEIRQFPNIDQAY 164 (249)
T ss_dssp EETT---------------------------------SHHHHHHHHH-----------------CCCSEEEEESSHHHHH
T ss_pred EeCC---------------------------------ChHHHHHHhc-----------------CCCceEEEcCCHHHHH
Confidence 0000 0011111000 0134555566678999
Q ss_pred HHHhcCcccEEEechhHHHHHHHhc-CCCcEeeCCeeecCceeeEecCCCCChHHHHHHHhcccccCcHHHHHHHhcCCC
Q 043468 583 SDLKSRKTGAVFLEVAEAKIFLAKY-CKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIASE 661 (720)
Q Consensus 583 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~~~~~~~~~~~~ 661 (720)
++|.+|++|+++.+...+.+++++. ...+.+++..+...+++++++|++++++.||++|.++.++|.++++.++|+...
T Consensus 165 ~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 165 LALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp HHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred HHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 9999999999999999999998876 345778888888889999999999999999999999999999999999999875
No 48
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.85 E-value=4e-21 Score=188.18 Aligned_cols=220 Identities=18% Similarity=0.237 Sum_probs=169.3
Q ss_pred CCeEEeecCCCccccceEe-eeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeee
Q 043468 347 QPLRIGVPIGSEFQQYVNV-EYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDV 425 (720)
Q Consensus 347 ~~l~v~~~~~~p~~p~~~~-~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 425 (720)
++|+|++. +.++||.+. +.++ ++.|+++|+++.+++++|++++++..+ |.+++.+|.+|++|++++++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D~~~~~~ 71 (237)
T 3kzg_A 3 LNLTIGTS--KFNPPFEVWSGNNS-----SLYGFDIDLMQEICRRLHATCTFEAYI----FDDLFPALKNREVDLVIASM 71 (237)
T ss_dssp CEEEEEEE--SEETTTEECCCTTS-----CCBSHHHHHHHHHHHHTTCEEEEEEEC----GGGHHHHHHTTSSSEECSSC
T ss_pred ceEEEEEC--CCCCCeEEEeCCCC-----CEeeehHHHHHHHHHHhCCceEEEEcC----HHHHHHHHhCCCCCEEEEcc
Confidence 67999994 558888886 4443 789999999999999999998777654 89999999999999998899
Q ss_pred eeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCccccccc
Q 043468 426 AIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTG 505 (720)
Q Consensus 426 ~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 505 (720)
..+++|.+.++||.|++....++++++.....++ .++.|+..-...
T Consensus 72 ~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~----------------------------------~dL~g~~i~~~~ 117 (237)
T 3kzg_A 72 IITDERKKHFIFSLPYMESNSQYITTVDSKISTF----------------------------------DDLHGKKIGVRK 117 (237)
T ss_dssp BCCTTGGGTCEECCCSBCCEEEEEEETTCSCCSG----------------------------------GGGTTCEEEEET
T ss_pred ccChhHhccceeeeeeeecceEEEEECCCCCCCH----------------------------------HHhCCCEEEEec
Confidence 9999999999999999999999999987532211 233332100000
Q ss_pred hhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHHHH
Q 043468 506 TFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDL 585 (720)
Q Consensus 506 ~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~~l 585 (720)
. +.|...+... ..+.++....+.++++++|
T Consensus 118 g---------------------------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l 147 (237)
T 3kzg_A 118 G---------------------------------TPYARQVLSE-----------------NRNNQVIFYELIQDMLLGL 147 (237)
T ss_dssp T---------------------------------STHHHHHHHT-----------------CSSCEEEEESSHHHHHHHH
T ss_pred C---------------------------------CHHHHHHHHh-----------------CCCCcEEEeCCHHHHHHHH
Confidence 0 0000000000 0123555666688999999
Q ss_pred hcCcccEEEechhHHHHHHHhcC------C-CcEeeCCee-ecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHH
Q 043468 586 KSRKTGAVFLEVAEAKIFLAKYC------K-GFTVAGPTY-KVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETS 656 (720)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~------~-~l~~~~~~~-~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~ 656 (720)
.+|++|+++.+...+.+++++.. . .+.+++..+ ...+++++++|+++ +++.+|++|.++.++|.+++|.++
T Consensus 148 ~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k 227 (237)
T 3kzg_A 148 SNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSE 227 (237)
T ss_dssp HTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGGHHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred HcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcCCCHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence 99999999999999999888754 2 578888777 78889999999976 999999999999999999999999
Q ss_pred hcCCC
Q 043468 657 MIASE 661 (720)
Q Consensus 657 ~~~~~ 661 (720)
|+...
T Consensus 228 ~~~~~ 232 (237)
T 3kzg_A 228 YFEGH 232 (237)
T ss_dssp HC---
T ss_pred HhCcc
Confidence 99876
No 49
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.84 E-value=8e-21 Score=189.25 Aligned_cols=242 Identities=18% Similarity=0.279 Sum_probs=168.9
Q ss_pred CCCeEEeecCCCccccceEeeec--cCCCceeEEEEeHHHHHHHHHhCCCccceEEecC--------C-CCHHHHHHHHH
Q 043468 346 DQPLRIGVPIGSEFQQYVNVEYD--ELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPF--------N-GSYDDLVKQLY 414 (720)
Q Consensus 346 ~~~l~v~~~~~~p~~p~~~~~~~--~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~--------~-~~~~~~~~~l~ 414 (720)
+++|+|++.+ ++||.+.+.+ +..+++++.|+++|+++++++++|++++++..+. + .+|++++.+|.
T Consensus 3 ~~~l~v~~~~---~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTIL---ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEECC---BTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEec---CCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 5789999954 6677776532 1112358999999999999999999988877631 1 16999999999
Q ss_pred hCCccEEeeeeeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCC
Q 043468 415 LNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWP 494 (720)
Q Consensus 415 ~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~ 494 (720)
+|++|+++++++.|++|.+.++||.||+..+.+++++++....++ .
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~~~----------------------------------~ 125 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESA----------------------------------E 125 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCSCCSH----------------------------------H
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCccccCCH----------------------------------H
Confidence 999999988899999999999999999999999999987532211 1
Q ss_pred CccCccccccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHH---hhhcCCe
Q 043468 495 ELTGSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIET---LQSSNAI 571 (720)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~d---l~~~~~~ 571 (720)
++.++....+.. .. ..++. ..+... .+....+ ....+.+
T Consensus 126 dL~g~~~~~ig~------------v~------------------~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~ 167 (263)
T 1mqi_A 126 DLSKQTEIAYGT------------LD------------------SGSTK----EFFRRS----KIAVFDKMWTYMRSAEP 167 (263)
T ss_dssp HHHTCSSSEEEC------------BS------------------SSHHH----HHHHHC----CSHHHHHHHHHHHHCSS
T ss_pred HHhcccCeeEEE------------Ee------------------ccHHH----HHHHhc----cchhHHHHHHHHhhCCC
Confidence 222211000000 00 00000 000000 0000000 0001111
Q ss_pred EEEecCcchHHHHH--hcCcccEEEechhHHHHHHHhc-CCCcEeeCCeeecCceeeEecCCCCChHHHHHHHhcccccC
Q 043468 572 IGYSRCLGDYASDL--KSRKTGAVFLEVAEAKIFLAKY-CKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESG 648 (720)
Q Consensus 572 ~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G 648 (720)
+....+.++++++| .+|+ |+++.+...+.++.++. |. +..++..+...+++++++|++++++.+|++|.+|.++|
T Consensus 168 ~~~~~~~~~~~~~l~~~~g~-da~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g 245 (263)
T 1mqi_A 168 SVFVRTTAEGVARVRKSKGK-YAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQG 245 (263)
T ss_dssp CCCBSSHHHHHHHHHHTTTS-EEEEEEHHHHHHHTTSTTCC-EEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTT
T ss_pred ceecCCHHHHHHHHhhcCCc-EEEEechHHHHHHHhcCCCc-eEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcc
Confidence 22233457888999 8999 89999998888877766 54 77777777778899999999999999999999999999
Q ss_pred cHHHHHHHhcCCC-CCC
Q 043468 649 KLRELETSMIASE-KCM 664 (720)
Q Consensus 649 ~~~~~~~~~~~~~-~~~ 664 (720)
.++++.++|+... +|+
T Consensus 246 ~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 246 LLDKLKNKWWYDKGECG 262 (263)
T ss_dssp HHHHHHHHHHTTTCSCC
T ss_pred cHHHHHHHHcCCCCCCC
Confidence 9999999999865 785
No 50
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.84 E-value=6.4e-21 Score=186.00 Aligned_cols=219 Identities=16% Similarity=0.249 Sum_probs=172.0
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeee
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGD 424 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 424 (720)
..++|||++. +.|+||.+.+.++ ++.|+++|+++++++++|++++++.. +|.+++.+|.+|++|+++++
T Consensus 3 ~a~~l~v~~~--~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 3 LADTVRMGTE--GAYPPYNFINDAG-----EVDGFERELGDELCKRAGLTCEWVKN----DWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp ---CEEEEEC--SEETTTEEECTTS-----CEESHHHHHHHHHHHHHTCCEEEEEC----CGGGHHHHHHTTSCSEECSS
T ss_pred CCCEEEEEEC--CCCCCeeEECCCC-----CEeeehHHHHHHHHHHcCCceEEEEC----CHHHHHHHHHCCCCCEEEeC
Confidence 3578999984 5788888875444 89999999999999999999777664 49999999999999999889
Q ss_pred eeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcccccc
Q 043468 425 VAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQT 504 (720)
Q Consensus 425 ~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 504 (720)
+..|++|.+.++||.||+.....+++++.. . .++.| ..- .
T Consensus 72 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~-------------------------------------~dL~g-~ig-v 111 (232)
T 3i6v_A 72 MSITDERDEVIDFTQNYIPPTASSYVATSD-G-------------------------------------ADLSG-IVA-A 111 (232)
T ss_dssp CBCCHHHHTTSEEEEEEECCCEEEEEESST-T-------------------------------------CCTTS-EEE-E
T ss_pred CcCCHHHHhhcCcccccccCCeEEEEECCC-h-------------------------------------HHhCC-CEE-E
Confidence 999999999999999999999999999874 0 22222 100 0
Q ss_pred chhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHHH
Q 043468 505 GTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASD 584 (720)
Q Consensus 505 ~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~~ 584 (720)
.. .+.|. +.+.+.+.++....+.++++++
T Consensus 112 ~~--------------------------------g~~~~-------------------~~l~~~~~~~~~~~~~~~~~~~ 140 (232)
T 3i6v_A 112 QT--------------------------------ATIQA-------------------GYIAESGATLVEFATPEETIAA 140 (232)
T ss_dssp ET--------------------------------TSHHH-------------------HHHHHSSSEEEEESSHHHHHHH
T ss_pred ec--------------------------------CchHH-------------------HHHHhcCCeEEEeCCHHHHHHH
Confidence 00 00011 1111124566667778899999
Q ss_pred HhcCcccEEEechhHHHHHHHhcCCCcEeeCC-eeecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhcCCCC
Q 043468 585 LKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGP-TYKVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMIASEK 662 (720)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~~~~~ 662 (720)
|.+|++|+++.+...+.+++++....+.+++. .+...+++++++|+++ +++.||++|.++.++|.++++.++|+....
T Consensus 141 L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~ 220 (232)
T 3i6v_A 141 VRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDA 220 (232)
T ss_dssp HHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCTTS
T ss_pred HHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCChHHHHHHHHcCCCC
Confidence 99999999999999999998887334777765 3566789999999987 999999999999999999999999999875
Q ss_pred CCC
Q 043468 663 CME 665 (720)
Q Consensus 663 ~~~ 665 (720)
|..
T Consensus 221 ~~~ 223 (232)
T 3i6v_A 221 AVY 223 (232)
T ss_dssp CCC
T ss_pred Ccc
Confidence 554
No 51
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.84 E-value=1.2e-20 Score=184.91 Aligned_cols=202 Identities=16% Similarity=0.215 Sum_probs=162.4
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeee
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGD 424 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 424 (720)
..++|+|++ .+.++||.+.+.++ ++.|+++|+++++++++|+++++... +|.+++.+|.+|++|+++++
T Consensus 13 ~~~~l~v~~--~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~~~~ 81 (239)
T 3kbr_A 13 ESGVLRVAT--TGDYKPFSYRTEEG-----GYAGFDVDMAQRLAESLGAKLVVVPT----SWPNLMRDFADDRFDIAMSG 81 (239)
T ss_dssp HHTEEEEEE--CSEETTTEEECTTS-----CEESHHHHHHHHHHHHTTCEEEEEEC----CTTTHHHHHHTTCCSEECSS
T ss_pred hCCeEEEEE--CCCCCCeeEECCCC-----CEEeehHHHHHHHHHHHCCceEEEEe----CHHHHHHHHHCCCcCEEEeC
Confidence 457899999 35678888865444 89999999999999999988777654 48999999999999999889
Q ss_pred eeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcccccc
Q 043468 425 VAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQT 504 (720)
Q Consensus 425 ~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 504 (720)
+..+++|.+.++||.|++.....+++++.+..
T Consensus 82 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~------------------------------------------------ 113 (239)
T 3kbr_A 82 ISINLERQRQAYFSIPYLRDGKTPITLCSEEA------------------------------------------------ 113 (239)
T ss_dssp CBCCHHHHTTCEECSCSEEECEEEEEEGGGGG------------------------------------------------
T ss_pred CcCCHHHcCccccchHHhccCcEEEEECCccc------------------------------------------------
Confidence 99999999999999999999999999987410
Q ss_pred chhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhc----------------
Q 043468 505 GTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSS---------------- 568 (720)
Q Consensus 505 ~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~---------------- 568 (720)
.+++++||.+.
T Consensus 114 -----------------------------------------------------~i~~~~dL~~~g~~v~~~~g~~~~~~l 140 (239)
T 3kbr_A 114 -----------------------------------------------------RFQTLEQIDQPGVTAIVNPGGTNEKFA 140 (239)
T ss_dssp -----------------------------------------------------GGSSHHHHSSTTCEEEECTTSHHHHHH
T ss_pred -----------------------------------------------------ccCCHHHhcCCCcEEEEcCCCcHHHHH
Confidence 11222222221
Q ss_pred -----CCeEEEecCcchHHHHHhcCcccEEEechhHHHHHHHhcCCCcEeeC--CeeecCceeeEecCCCC-ChHHHHHH
Q 043468 569 -----NAIIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAG--PTYKVGGLGFAFPKGSP-LLPSVIEA 640 (720)
Q Consensus 569 -----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~s~-~~~~in~~ 640 (720)
+.++....+.++++++|.+|++|+++.+...+.+++++... +.++. ..+...+++++++| ++ +++.+|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k-~~~l~~~ln~~ 218 (239)
T 3kbr_A 141 RANLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPE-LCAVHPQQPFDFAEKAYLLPR-DEAFKRYVDQW 218 (239)
T ss_dssp HHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-EEECCCC-CCCCEEECCEECS-CHHHHHHHHHH
T ss_pred HHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCC-cEEecCCCCccccceEEEEcC-CHHHHHHHHHH
Confidence 23444444578999999999999999999999999887654 55443 44667788999999 55 99999999
Q ss_pred HhcccccCcHHHHHHHhcCC
Q 043468 641 LLKVSESGKLRELETSMIAS 660 (720)
Q Consensus 641 i~~~~~~G~~~~~~~~~~~~ 660 (720)
|.+|.++|.++++.++|+..
T Consensus 219 l~~l~~~g~~~~i~~k~~~~ 238 (239)
T 3kbr_A 219 LHIAEQSGLLRQRMEHWLEY 238 (239)
T ss_dssp HHHHHHHTHHHHHHHHHC--
T ss_pred HHHHHHCCcHHHHHHHHhcc
Confidence 99999999999999999863
No 52
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.83 E-value=2.5e-20 Score=186.20 Aligned_cols=231 Identities=16% Similarity=0.247 Sum_probs=175.2
Q ss_pred CCCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEee
Q 043468 344 AKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVG 423 (720)
Q Consensus 344 ~~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 423 (720)
...++|+|++. +.|+||.+.+.++ ++.|+++|+++.+++++|++++++..+ |.+++.+|.+|++|++++
T Consensus 18 ~~~~~l~v~~~--~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D~~~~ 86 (268)
T 3hv1_A 18 TKEKKIKIGFD--ATFVPMGYEEKDG-----SYIGFDIDLANAVFKLYGIDVEWQAID----WDMKETELKNGTIDLIWN 86 (268)
T ss_dssp HHHTEEEEEEC--TEETTTEEECTTS-----CEECHHHHHHHHHHHTTTCEEEEEECC----GGGHHHHHHHTSCSEECS
T ss_pred hcCCcEEEEEC--CCCCCceEECCCC-----CEEEehHHHHHHHHHHhCCcEEEEECC----HHHHHHHHHCCCCCEEEe
Confidence 34678999994 5678888875444 899999999999999999887776553 899999999999999988
Q ss_pred eeeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCccccc
Q 043468 424 DVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQ 503 (720)
Q Consensus 424 ~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 503 (720)
++..+++|.+.+.||.|++....++++++.....++ .++.|+..-.
T Consensus 87 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~i~~~----------------------------------~dL~g~~i~v 132 (268)
T 3hv1_A 87 GYSVTDERKQSADFTEPYMVNEQVLVTKKSSGIDSV----------------------------------AGMAGKTLGA 132 (268)
T ss_dssp SCBCCHHHHTTCEECCCCEEECEEEEEEGGGCCCSS----------------------------------GGGTTCCEEE
T ss_pred cCccCHHHHhcCcCcHHHeeCceEEEEECCCCCCCH----------------------------------HHhCCCEEEE
Confidence 999999999999999999999999999987522222 3333321100
Q ss_pred cchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHH
Q 043468 504 TGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYAS 583 (720)
Q Consensus 504 ~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~ 583 (720)
.. .+.|...|..... . +.+. ..+.++....+.+++++
T Consensus 133 ~~---------------------------------g~~~~~~l~~~~~------~---~~~~-~~~~~~~~~~~~~~~~~ 169 (268)
T 3hv1_A 133 QA---------------------------------GSSGYDAFNASPK------I---LKDV-VANQKVVQYSTFTQALI 169 (268)
T ss_dssp ET---------------------------------TCHHHHHHHHCTT------T---TTTT-SGGGCEEEESSHHHHHH
T ss_pred Ee---------------------------------CCchHHHHHHhhH------H---Hhhh-cccceEEEeCCHHHHHH
Confidence 00 0111111111100 0 0000 01135555666789999
Q ss_pred HHhcCcccEEEechhHHHHHHHhcC--CCcEeeCCeeecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhcCC
Q 043468 584 DLKSRKTGAVFLEVAEAKIFLAKYC--KGFTVAGPTYKVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMIAS 660 (720)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~~~ 660 (720)
+|.+|++|+++.+...+.+++++.. ..+.+++..+...+++++++|+++ +++.||++|.++.++|.++++.++|+..
T Consensus 170 ~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 249 (268)
T 3hv1_A 170 DLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGE 249 (268)
T ss_dssp HHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred HHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCC
Confidence 9999999999999999999888763 457777777777889999999987 9999999999999999999999999987
Q ss_pred CC
Q 043468 661 EK 662 (720)
Q Consensus 661 ~~ 662 (720)
..
T Consensus 250 ~~ 251 (268)
T 3hv1_A 250 DV 251 (268)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 53
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.83 E-value=1.1e-19 Score=177.25 Aligned_cols=219 Identities=16% Similarity=0.240 Sum_probs=166.7
Q ss_pred CCCeEEeecCCCccccceEe--eeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEee
Q 043468 346 DQPLRIGVPIGSEFQQYVNV--EYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVG 423 (720)
Q Consensus 346 ~~~l~v~~~~~~p~~p~~~~--~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 423 (720)
.++|+|++. +++||.+. +.++ ++.|+++|+++.+++++|+++++...+ +|.+++.+|.+|++|++++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~~---~~~~~~~~l~~g~~D~~~~ 71 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGKNA-----AFTGISLDVWRAVAESQKWNSEYVRQN---SISAGITAVAEGELDILIG 71 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC----------CEESHHHHHHHHHHHHHTCCEEEEECS---CHHHHHHHHHTTSCSEEEE
T ss_pred CceEEEEec---CCCCeEEEecCCCC-----CEEEEeHHHHHHHHHHcCCcEEEEEeC---CHHHHHHHHHCCCcCEEEe
Confidence 468999994 37788776 3333 899999999999999999987777653 5999999999999999988
Q ss_pred eeeeeccce--eeeeecccccccceEEEEecccC--CCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCc
Q 043468 424 DVAIVARRC--QYADFTHPYTESGLVMIFPVQKS--GNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGS 499 (720)
Q Consensus 424 ~~~~t~~r~--~~~~fs~p~~~~~~~~~v~~~~~--~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 499 (720)
++..+++|. +.+.||.|++....++++++... ..++ .++.|+
T Consensus 72 ~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~----------------------------------~dL~g~ 117 (233)
T 1ii5_A 72 PISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSV----------------------------------GDLKNK 117 (233)
T ss_dssp EEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTTTCSSG----------------------------------GGGTTC
T ss_pred eeecCccccccceeEEccceeecCeEEEEECCCCCCCCCH----------------------------------HHhCCC
Confidence 889999999 99999999999999999998752 1111 223332
Q ss_pred cccccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcc
Q 043468 500 ALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLG 579 (720)
Q Consensus 500 ~~~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~ 579 (720)
..-.... +.+. +.|.+.+.++....+.+
T Consensus 118 ~v~~~~g---------------------------------~~~~-------------------~~l~~~~~~~~~~~~~~ 145 (233)
T 1ii5_A 118 EVAVVRD---------------------------------TTAV-------------------DWANFYQADVRETNNLT 145 (233)
T ss_dssp EEEEETT---------------------------------SHHH-------------------HHHHHTTCEEEEESSHH
T ss_pred eEEEECC---------------------------------ccHH-------------------HHHHHcCCCeEEcCCHH
Confidence 1000000 0000 01111134555566678
Q ss_pred hHHHHHhcCcccEEEechhHHHHHHHhc-CCCcEeeCCeeecCceeeEecCCCCChHHHHHHHhcccccCcHHHHHHHhc
Q 043468 580 DYASDLKSRKTGAVFLEVAEAKIFLAKY-CKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMI 658 (720)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~~~~~~~~~ 658 (720)
+++++|.+|++|+++.+...+.+++++. ...+.+++..+...+++++++|++++.+.+|++|..|.++|.++++.++|+
T Consensus 146 ~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~l~~l~~~g~~~~i~~k~~ 225 (233)
T 1ii5_A 146 AAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWL 225 (233)
T ss_dssp HHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHc
Confidence 9999999999999999999998888876 234777777777778999999999999999999999999999999999998
Q ss_pred CCC
Q 043468 659 ASE 661 (720)
Q Consensus 659 ~~~ 661 (720)
...
T Consensus 226 ~~~ 228 (233)
T 1ii5_A 226 GPG 228 (233)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 54
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.82 E-value=5e-20 Score=180.98 Aligned_cols=223 Identities=18% Similarity=0.198 Sum_probs=172.4
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeee
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGD 424 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 424 (720)
..++|+|++ .+.++||.+.+.++ ++.|+++|+++.+++++|++++++.. +|.+++.+|.+|++|+++++
T Consensus 9 ~~~~l~v~~--~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~~~~ 77 (242)
T 3del_B 9 NSEKFIVGT--NATYPPFEFVDKRG-----EVVGFDIDLAREISNKLGKTLDVREF----SFDALILNLKQHRIDAVITG 77 (242)
T ss_dssp --CEEEEEE--CSCBTTTBEECTTS-----CEESHHHHHHHHHHHHHTCEEEEEEC----CGGGHHHHHHTTSSSEECSS
T ss_pred cCCcEEEEe--CCCCCCeeEECCCC-----CEEEeeHHHHHHHHHHcCCceEEEEc----CHHHHHHHHhCCCcCEEEec
Confidence 457899999 46788888865444 89999999999999999988776654 48999999999999999889
Q ss_pred eeeeccceeeeeeccccc--ccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcccc
Q 043468 425 VAIVARRCQYADFTHPYT--ESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALH 502 (720)
Q Consensus 425 ~~~t~~r~~~~~fs~p~~--~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 502 (720)
+..+++|.+.++| .|++ ....++++++.....++ .++.|+..-
T Consensus 78 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~i~~~----------------------------------~dL~g~~i~ 122 (242)
T 3del_B 78 MSITPSRLKEILM-IPYYGEEIKHLVLVFKGENKHPL----------------------------------PLTQYRSVA 122 (242)
T ss_dssp BBCCHHHHTTEEE-EEEEEEEESEEEEEEESCCSCCC----------------------------------CGGGSSCEE
T ss_pred CcCCHHHHhcccc-eeeeecCCceEEEEeCCCCCCCH----------------------------------HHhCCCEEE
Confidence 9999999999999 9999 88999999887422222 333332110
Q ss_pred ccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHH
Q 043468 503 QTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYA 582 (720)
Q Consensus 503 ~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~ 582 (720)
.... +.|...+.. ..+.++....+.++++
T Consensus 123 v~~g---------------------------------~~~~~~l~~------------------~~~~~~~~~~~~~~~~ 151 (242)
T 3del_B 123 VQTG---------------------------------TYQEAYLQS------------------LSEVHIRSFDSTLEVL 151 (242)
T ss_dssp EETT---------------------------------SHHHHHHHH------------------STTCCEEEESSHHHHH
T ss_pred EEcC---------------------------------cHHHHHHHh------------------CCCceEEEECCHHHHH
Confidence 0000 011111111 1234555566778999
Q ss_pred HHHhcCcccEEEechhHHHHHHHhcCCCcEeeCCeeecCc----eeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHh
Q 043468 583 SDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGG----LGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSM 657 (720)
Q Consensus 583 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~ 657 (720)
++|.+|++|+++.+...+.+++++... +.+++..+...+ ++++++|+++ +++.||++|.++.++|.++++.+||
T Consensus 152 ~~L~~g~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~ 230 (242)
T 3del_B 152 MEVMHGKSPVAVLEPSIAQVVLKDFPA-LSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKW 230 (242)
T ss_dssp HHHHTTSSSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHcCCCCEEEecHHHHHHHHHhCCC-eEEecCccCcccccceEEEEEeCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999998887765 777776677777 8999999988 9999999999999999999999999
Q ss_pred cCCCCCCC
Q 043468 658 IASEKCME 665 (720)
Q Consensus 658 ~~~~~~~~ 665 (720)
+....++.
T Consensus 231 ~~~~~~~~ 238 (242)
T 3del_B 231 GLNNLEHH 238 (242)
T ss_dssp TGGGCSST
T ss_pred CCCCCccc
Confidence 98875544
No 55
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.82 E-value=1.5e-19 Score=175.45 Aligned_cols=218 Identities=21% Similarity=0.319 Sum_probs=164.3
Q ss_pred CCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeeee
Q 043468 347 QPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVA 426 (720)
Q Consensus 347 ~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~ 426 (720)
++|+|++. +.|+||.+.+.++ ++.|+++|+++.+++++|+++++... +|.+++.+|.+|++|++++++.
T Consensus 2 ~~l~v~~~--~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~~~~~~ 70 (227)
T 3tql_A 2 DTIKFATE--ATYPPYVYMGPSG-----QVEGFGADIVKAVCKQMQAVCTISNQ----PWDSLIPSLKLGKFDALFGGMN 70 (227)
T ss_dssp CEEEEEEC--SCBTTTBEEC--C-----CEESHHHHHHHHHHHHTTCEEEEEEC----CHHHHHHHHHHTSCSEECSSCB
T ss_pred ceEEEEEc--CCCCCeeEECCCC-----CcccchHHHHHHHHHHhCCeEEEEeC----CHHHHHHHHhCCCCCEEEecCc
Confidence 57999994 4688888875544 89999999999999999999777654 4999999999999999988999
Q ss_pred eeccceeeeeecccccccceEEEEecccCC-CcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCccccccc
Q 043468 427 IVARRCQYADFTHPYTESGLVMIFPVQKSG-NKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTG 505 (720)
Q Consensus 427 ~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~-~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 505 (720)
.+++|.+.+.||.|++....++++++.... .++ .++.|+..-...
T Consensus 71 ~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~~~~~----------------------------------~dL~g~~v~~~~ 116 (227)
T 3tql_A 71 ITTARQKEVDFTDPYYTNSVSFIADKNTPLTLSK----------------------------------QGLKGKIIGVQG 116 (227)
T ss_dssp CCTTGGGTEEECSCSBCCEEEEEEETTSCCCCST----------------------------------TTTTTCEEEEET
T ss_pred CCHhHHhheecccceeccceEEEEeCCCCCCCCH----------------------------------HHhCCCEEEEEe
Confidence 999999999999999999999999988632 211 333332110000
Q ss_pred hhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHHHH
Q 043468 506 TFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDL 585 (720)
Q Consensus 506 ~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~~l 585 (720)
. ..|...|... .....++....+.++++++|
T Consensus 117 g---------------------------------~~~~~~l~~~----------------~~~~~~~~~~~~~~~~~~~l 147 (227)
T 3tql_A 117 G---------------------------------TTFDSYLQDS----------------FGNSITIQRYPSEEDALMDL 147 (227)
T ss_dssp T---------------------------------SHHHHHHHHH----------------HGGGSEEEEESSHHHHHHHH
T ss_pred c---------------------------------ccHHHHHHHh----------------ccccceEEEcCCHHHHHHHH
Confidence 0 0111111111 01114555666778999999
Q ss_pred hcCcccEEEechhHHHHHHHhcC-CCcEeeCCeeecC-----ceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhc
Q 043468 586 KSRKTGAVFLEVAEAKIFLAKYC-KGFTVAGPTYKVG-----GLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMI 658 (720)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~-----~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~ 658 (720)
.+|++|+++.+...+.+++++.. ..+.+++..+... +++++++|++| +++.||++|.++.++|.++++.++|+
T Consensus 148 ~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 148 TSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp TTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred HcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 99999999999999999888763 3366665444333 45899999988 99999999999999999999999996
No 56
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.82 E-value=9.6e-20 Score=179.37 Aligned_cols=229 Identities=10% Similarity=0.170 Sum_probs=169.9
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCC-CccceEEecCCCCHHHHHHHHHhCCccEEee
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLP-FYLPYNFIPFNGSYDDLVKQLYLNNFAGVVG 423 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~-~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 423 (720)
..++|+|++. +.|+||.+. .++ ++.|+++|+++.+++++| +++++... +|.+++.+|.+|++|++++
T Consensus 6 ~~~~l~v~~~--~~~~P~~~~-~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 6 SKKEIIVATN--GSPRPFIYE-ENG-----ELTGYEIEVVRAIFKDSDKYDVKFEKT----EWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp -CEEEEEEEC--CCSTTTSEE-ETT-----EEESHHHHHHHHHHTTCSSEEEEEEEC----CHHHHHHHHHTTSCSEECS
T ss_pred CCCEEEEEeC--CCcCCeEEc-CCC-----CCcccHHHHHHHHHHHcCCceEEEEeC----CHHHHHHHHhCCCcCEEec
Confidence 3568999994 467788773 444 899999999999999999 99777665 4999999999999999988
Q ss_pred eeeeeccceeeeeecccccccceEEEEec-ccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcccc
Q 043468 424 DVAIVARRCQYADFTHPYTESGLVMIFPV-QKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALH 502 (720)
Q Consensus 424 ~~~~t~~r~~~~~fs~p~~~~~~~~~v~~-~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 502 (720)
++..+++|.+.+.||.|++....++++++ .....++ .++.|+..-
T Consensus 74 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~~----------------------------------~dL~g~~i~ 119 (246)
T 4eq9_A 74 NLSYTKERAEKYLYAAPIAQNPNVLVVKKDDSSIKSL----------------------------------DDIGGKSTE 119 (246)
T ss_dssp SCCCCHHHHHHEEECCCCEECCEEEEEETTCCSCSSG----------------------------------GGCTTCEEE
T ss_pred ccccChhhhhceeeccceecCceEEEEECCCCCCCCH----------------------------------HHhCCCEEE
Confidence 89999999999999999999999999998 3322222 333332110
Q ss_pred ccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEe-cCcchH
Q 043468 503 QTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYS-RCLGDY 581 (720)
Q Consensus 503 ~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~-~~~~~~ 581 (720)
.. -.+.|...+..++... .....++... .+.+++
T Consensus 120 ~~---------------------------------~g~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~ 154 (246)
T 4eq9_A 120 VV---------------------------------QATTSAKQLEAYNAEH------------TDNPTILNYTKADFQQI 154 (246)
T ss_dssp EC---------------------------------TTCHHHHHHHHHHHHC------------TTSCCEEEECCCCHHHH
T ss_pred Ee---------------------------------cCccHHHHHHHHHhhC------------CCcceEEEecCCCHHHH
Confidence 00 0011111111111000 0012344433 357899
Q ss_pred HHHHhcCcccEEEechhHHHHHHHhc-CCCcEeeCCeeecCc-eeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhc
Q 043468 582 ASDLKSRKTGAVFLEVAEAKIFLAKY-CKGFTVAGPTYKVGG-LGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMI 658 (720)
Q Consensus 582 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~ 658 (720)
+++|.+|++|+++.+...+.+++++. ...+.++.......+ ++++++|++| +++.||++|.++.++|.++++.++|+
T Consensus 155 ~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~ 234 (246)
T 4eq9_A 155 MVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEKLSKQFF 234 (246)
T ss_dssp HHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhc
Confidence 99999999999999999999988876 344777776665555 7899999988 99999999999999999999999999
Q ss_pred CCCCCC
Q 043468 659 ASEKCM 664 (720)
Q Consensus 659 ~~~~~~ 664 (720)
.....+
T Consensus 235 ~~~~~p 240 (246)
T 4eq9_A 235 GDTYLP 240 (246)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876433
No 57
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.81 E-value=1.1e-19 Score=177.31 Aligned_cols=221 Identities=13% Similarity=0.218 Sum_probs=169.7
Q ss_pred CCCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEee
Q 043468 344 AKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVG 423 (720)
Q Consensus 344 ~~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 423 (720)
...++|+|++ .+.++||.+.+.++ ++.|+++|+++.+++++|++++++.. +|..++.++.+|++|++ .
T Consensus 8 ~~~~~l~v~~--~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~-~ 75 (234)
T 3h7m_A 8 DRHRTIVVGG--DRDYPPYEFIDQNG-----KPAGYNVELTRAIAEVMGMTVEFRLG----AWSEMFSALKSGRVDVL-Q 75 (234)
T ss_dssp CSSSCEEEEE--ETEETTTEEECTTS-----CEESHHHHHHHHHHHHHTCCEEEEEE----CGGGHHHHHHTTSSSEE-E
T ss_pred CCCCEEEEEe--cCCCCCeEEECCCC-----CEeeeEHHHHHHHHHHcCCceEEEeC----CHHHHHHHHhCCCeeEE-E
Confidence 3467899999 46688888875444 89999999999999999999877754 38999999999999996 7
Q ss_pred eeeeeccceeeeeecccccccceEEEEecccC-CCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcccc
Q 043468 424 DVAIVARRCQYADFTHPYTESGLVMIFPVQKS-GNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALH 502 (720)
Q Consensus 424 ~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~-~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 502 (720)
++..+++|.+.+.||.|++....++++++... ..++ .++.|+..-
T Consensus 76 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~~~~----------------------------------~dL~g~~i~ 121 (234)
T 3h7m_A 76 GISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGL----------------------------------EDLRGRKVA 121 (234)
T ss_dssp EEECCHHHHTTEEEEEEEEEEEEEEEEESSSCCCSSG----------------------------------GGGTTSCEE
T ss_pred eccCCHhHHhhcCCCccccccceEEEEECCCCCCCCH----------------------------------HHhCCCEEE
Confidence 89999999999999999999999999998853 2211 233332100
Q ss_pred ccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHH
Q 043468 503 QTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYA 582 (720)
Q Consensus 503 ~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~ 582 (720)
.... ..|...|.. . ..+.++....+.++++
T Consensus 122 ~~~g---------------------------------~~~~~~l~~----~-------------~~~~~~~~~~~~~~~~ 151 (234)
T 3h7m_A 122 LHRD---------------------------------GIMHEYLAE----R-------------GYGKDLVLTPTPADAL 151 (234)
T ss_dssp EETT---------------------------------SHHHHHHHT----T-------------TCGGGEEEESSHHHHH
T ss_pred EEeC---------------------------------chHHHHHHh----c-------------CCCceEEEeCCHHHHH
Confidence 0000 000000000 0 0112444555678899
Q ss_pred HHHhcCcccEEEechhHHHHHHHhc-CCCcEeeCCeeecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhcCC
Q 043468 583 SDLKSRKTGAVFLEVAEAKIFLAKY-CKGFTVAGPTYKVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMIAS 660 (720)
Q Consensus 583 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~~~ 660 (720)
++|.+|++|+++.+...+.+++++. ...+..++..+...+++++++|+++ +++.||++|.+|.++|.++++.++|+..
T Consensus 152 ~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 231 (234)
T 3h7m_A 152 RLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGV 231 (234)
T ss_dssp HHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHSTTC
T ss_pred HHHHcCCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHHHHHHHHHHHHHHcCcHHHHHHHhccc
Confidence 9999999999999999999888875 4457777777788889999999988 9999999999999999999999999875
No 58
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.80 E-value=2.3e-19 Score=179.04 Aligned_cols=221 Identities=16% Similarity=0.227 Sum_probs=166.6
Q ss_pred CCCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEee
Q 043468 344 AKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVG 423 (720)
Q Consensus 344 ~~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 423 (720)
...++|+|++ .+.|+||.+.+.++ ++.|+++|+++.+++++|++++++..+ +|.+++.+|.+|++|++.
T Consensus 29 ~~~~~l~v~~--~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~lg~~~~~~~~~---~~~~~~~~l~~G~~D~~~- 97 (267)
T 3mpk_A 29 ADHPVVKVAV--LNLFAPFTLFRTDE-----QFGGISAAVLQLLQLRTGLDFEIIGVD---TVEELIAKLRSGEADMAG- 97 (267)
T ss_dssp HHCSEEEEEE--ETEETTTEECCTTC-----CCBSHHHHHHHHHHHHHCCEEEEEEES---SHHHHHHHHHHTSCSEEE-
T ss_pred HhCCcEEEEe--CCCCCCeEEECCCC-----cEeeeHHHHHHHHHHHHCCeEEEEecC---CHHHHHHHHHCCCccEEe-
Confidence 3467899999 35588888865444 889999999999999999997777554 599999999999999975
Q ss_pred eeeeeccceeeeeecccccccceEEEEeccc-CCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcccc
Q 043468 424 DVAIVARRCQYADFTHPYTESGLVMIFPVQK-SGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALH 502 (720)
Q Consensus 424 ~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~-~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 502 (720)
++..+++|.+.+.||.||+....++++++.. ...++ .++.|+..-
T Consensus 98 ~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~i~~~----------------------------------~dL~g~~i~ 143 (267)
T 3mpk_A 98 ALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDA----------------------------------DHLDGRTVA 143 (267)
T ss_dssp EEECCGGGTTTEEECSCSEEECEEEEEESSTTSCSSG----------------------------------GGCTTCEEE
T ss_pred cccCChhhhcceEechhhccCceEEEEECCCCCCCCH----------------------------------HHHCCCEEE
Confidence 8999999999999999999999999999874 22111 233332110
Q ss_pred ccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHH
Q 043468 503 QTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYA 582 (720)
Q Consensus 503 ~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~ 582 (720)
.... +.|...|. +. ..+.++....+.++++
T Consensus 144 v~~g---------------------------------~~~~~~l~----------------~~-~~~~~~~~~~~~~~~l 173 (267)
T 3mpk_A 144 LVRN---------------------------------SAAIPLLQ----------------RR-YPQAKVVTADNPSEAM 173 (267)
T ss_dssp EETT---------------------------------CTHHHHHH----------------HH-CTTSEEEEESSHHHHH
T ss_pred EeCC---------------------------------chhHHHHH----------------Hh-CCCcEEEEeCCHHHHH
Confidence 0000 00000000 00 0134666666788999
Q ss_pred HHHhcCcccEEEechhHHHHHHHhc-CCCcEeeCCee-ecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhcC
Q 043468 583 SDLKSRKTGAVFLEVAEAKIFLAKY-CKGFTVAGPTY-KVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMIA 659 (720)
Q Consensus 583 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~-~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~~ 659 (720)
++|.+|++|+++.+...+.+++++. ...+.+.+... ...+++++++|++| +++.||++|.++.++| ++++.++|+.
T Consensus 174 ~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~~-~~~i~~kw~~ 252 (267)
T 3mpk_A 174 LMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSISNDE-LASIISRWRG 252 (267)
T ss_dssp HHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHHHHHHHHHHHTSCHHH-HHHHHHTTC-
T ss_pred HHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHHHHHHHHHHHHhCCHHH-HHHHHHhhcc
Confidence 9999999999999999999888874 44466665433 35678999999988 9999999999999997 9999999998
Q ss_pred C
Q 043468 660 S 660 (720)
Q Consensus 660 ~ 660 (720)
.
T Consensus 253 ~ 253 (267)
T 3mpk_A 253 S 253 (267)
T ss_dssp -
T ss_pred C
Confidence 6
No 59
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.79 E-value=5.7e-19 Score=171.27 Aligned_cols=218 Identities=18% Similarity=0.310 Sum_probs=167.3
Q ss_pred CCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeeee
Q 043468 347 QPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVA 426 (720)
Q Consensus 347 ~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~ 426 (720)
++|+|++. +.++||.+.+ ++ ++.|+++|+++.+++++|+++++... +|.+++.++.+|++|++++++.
T Consensus 3 ~~l~v~~~--~~~~P~~~~~-~g-----~~~G~~~dl~~~~~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~~~~~~ 70 (226)
T 1wdn_A 3 KKLVVATD--TAFVPFEFKQ-GD-----LYVGFDVDLWAAIAKELKLDYELKPM----DFSGIIPALQTKNVDLALAGIT 70 (226)
T ss_dssp -CEEEEEE--SSBTTTBEEE-TT-----EEESHHHHHHHHHHHHHTCCEEEEEE----CGGGHHHHHHTTSSSEEEEEEE
T ss_pred ceEEEEEC--CCCCCeeEec-CC-----cEEEeeHHHHHHHHHHhCCEEEEEEC----CHHHHHHHHhCCCCCEEEEcCc
Confidence 57999994 5788887765 23 89999999999999999988777754 3899999999999999988888
Q ss_pred eeccceeeeeecccccccceEEEEecccC-CCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCccccccc
Q 043468 427 IVARRCQYADFTHPYTESGLVMIFPVQKS-GNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTG 505 (720)
Q Consensus 427 ~t~~r~~~~~fs~p~~~~~~~~~v~~~~~-~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 505 (720)
.+++|.+.+.||.|++....++++++... ..++ .++.|+..-...
T Consensus 71 ~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~i~~~----------------------------------~dL~g~~i~~~~ 116 (226)
T 1wdn_A 71 ITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSV----------------------------------KDLDGKVVAVKS 116 (226)
T ss_dssp CCHHHHTTSEECSCCEEEEEEEEEETTCCSCSSS----------------------------------TTTTTCEEEEET
T ss_pred CCHHHhCccccccchhcCceEEEEeCCCCCCCCH----------------------------------HHhCCCEEEEEc
Confidence 89999999999999999999999998752 2221 334332110000
Q ss_pred hhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHHHH
Q 043468 506 TFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDL 585 (720)
Q Consensus 506 ~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~~l 585 (720)
. +.+...|... ..+.++....+.++.+++|
T Consensus 117 g---------------------------------~~~~~~l~~~-----------------~~~~~~~~~~~~~~~~~~l 146 (226)
T 1wdn_A 117 G---------------------------------TGSVDYAKAN-----------------IKTKDLRQFPNIDNAYMEL 146 (226)
T ss_dssp T---------------------------------SHHHHHHHHH-----------------CCCSEEEEESSHHHHHHHH
T ss_pred C---------------------------------CcHHHHHHHh-----------------CCCceEEEeCCHHHHHHHH
Confidence 0 0000001000 0134555566678899999
Q ss_pred hcCcccEEEechhHHHHHHHhcC-CCcEeeCCeeecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhcCC
Q 043468 586 KSRKTGAVFLEVAEAKIFLAKYC-KGFTVAGPTYKVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMIAS 660 (720)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~~~ 660 (720)
.+|++|+++.+...+.+++++.. ..+.+++......+++++++|+++ +.+.+|++|.++.++|.++++.++|+..
T Consensus 147 ~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 223 (226)
T 1wdn_A 147 GTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGT 223 (226)
T ss_dssp HTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHSS
T ss_pred HcCCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 99999999999999888888762 347777766777788999999986 9999999999999999999999999875
No 60
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.79 E-value=3e-19 Score=174.95 Aligned_cols=223 Identities=18% Similarity=0.253 Sum_probs=164.8
Q ss_pred CCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeee
Q 043468 346 DQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDV 425 (720)
Q Consensus 346 ~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 425 (720)
.++|+|++ .+.|+||.+.+.++ ++.|+++|+++.+++++|+++++... +|.+++.+|.+|++|++++++
T Consensus 3 ~~~l~v~~--~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~~~~~ 71 (239)
T 1lst_A 3 PQTVRIGT--DTTYAPFSSKDAKG-----EFIGFDIDLGNEMCKRMQVKCTWVAS----DFDALIPSLKAKKIDAIISSL 71 (239)
T ss_dssp CSEEEEEE--CSCBTTTBEECTTC-----CEESHHHHHHHHHHHHHTCEEEEEEC----CGGGHHHHHHTTSCSEECSSC
T ss_pred cceEEEEE--CCCcCCeeEECCCC-----CEeeEHHHHHHHHHHHHCCeEEEEeC----CHHHHHHHHhCCCCCEEEECc
Confidence 46899999 46688888765443 89999999999999999988777654 489999999999999998889
Q ss_pred eeeccceeeeeecccccccceEEEEecccCCC-cccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcccccc
Q 043468 426 AIVARRCQYADFTHPYTESGLVMIFPVQKSGN-KTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQT 504 (720)
Q Consensus 426 ~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~-~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 504 (720)
..+++|.+.+.||.|++....++++++..... ++ .++.|+..-..
T Consensus 72 ~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~~~~~----------------------------------~dL~g~~v~~~ 117 (239)
T 1lst_A 72 SITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTL----------------------------------ESLKGKHVGVL 117 (239)
T ss_dssp BCCHHHHHHCEECSCSBCCCEEEEEETTCCCCSSH----------------------------------HHHTTCEEEEE
T ss_pred CcCHHHhhceeecccceeCceEEEEeCCCCCCCCH----------------------------------HHhCCCEEEEE
Confidence 99999999999999999999999999875221 11 12222110000
Q ss_pred chhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHHH
Q 043468 505 GTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASD 584 (720)
Q Consensus 505 ~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~~ 584 (720)
. .+.|...|...+ ...+.++....+.++.+++
T Consensus 118 ~---------------------------------g~~~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~ 149 (239)
T 1lst_A 118 Q---------------------------------GSTQEAYANDNW---------------RTKGVDVVAYANQDLIYSD 149 (239)
T ss_dssp T---------------------------------TSHHHHHHHHHT---------------GGGTCEEEEESSHHHHHHH
T ss_pred c---------------------------------CccHHHHHHHhc---------------ccCCCeEEEcCCHHHHHHH
Confidence 0 001111111111 0124566666678899999
Q ss_pred HhcCcccEEEechhHHHH-HHHhc-CCCcEeeCCeeec-----CceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHH
Q 043468 585 LKSRKTGAVFLEVAEAKI-FLAKY-CKGFTVAGPTYKV-----GGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETS 656 (720)
Q Consensus 585 l~~~~~~~~~~~~~~~~~-~~~~~-~~~l~~~~~~~~~-----~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~ 656 (720)
|.+|++|+++.+...+.+ ++.+. ...+.+++..+.. .+++++++|+++ +.+.+|++|.++.++|.++++.++
T Consensus 150 l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k 229 (239)
T 1lst_A 150 LTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKK 229 (239)
T ss_dssp HHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHT
T ss_pred HHcCCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCCCHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 999999999999888764 44443 2336666654432 368899999988 999999999999999999999999
Q ss_pred hcCCC
Q 043468 657 MIASE 661 (720)
Q Consensus 657 ~~~~~ 661 (720)
|+...
T Consensus 230 ~~~~~ 234 (239)
T 1lst_A 230 YFDFN 234 (239)
T ss_dssp TCSSC
T ss_pred HcCCC
Confidence 98864
No 61
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.79 E-value=6.5e-19 Score=171.28 Aligned_cols=218 Identities=21% Similarity=0.306 Sum_probs=166.3
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeee
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGD 424 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 424 (720)
..++|+|++ .+.++||.+.+.++ ++.|+++|+++.+++++|+++++... +|.+++.++.+|++|+++++
T Consensus 4 ~a~~l~v~~--~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 4 SARTLHFGT--SATYAPYEFVDADN-----KIVGFDIDVANAVCKEMQAECSFTNQ----SFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp SCCEEEEEE--CCCBTTTBEECTTS-----CEESHHHHHHHHHHHHTTCEEEEEEC----CGGGHHHHHHTTSCSEECSS
T ss_pred cCCcEEEEe--CCCcCCceEECCCC-----CCcceeHHHHHHHHHHhCCeEEEEEc----CHHHHHHHHhCCCceEEEec
Confidence 457899999 35788888765433 89999999999999999988777654 48999999999999999878
Q ss_pred eeeeccceeeeeeccccccc-ceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCccccc
Q 043468 425 VAIVARRCQYADFTHPYTES-GLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQ 503 (720)
Q Consensus 425 ~~~t~~r~~~~~fs~p~~~~-~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 503 (720)
+..+++|.+.+.||.|++.. ..++++++.. ..++ .++.|+..-.
T Consensus 73 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~-~~~~----------------------------------~dL~g~~v~~ 117 (229)
T 2y7i_A 73 MDMTPKREQQVSFSQPYYEGLSAVVVTRKGA-YHTF----------------------------------ADLKGKKVGL 117 (229)
T ss_dssp CBCCHHHHTTSEECSCSBCCCCEEEEEETTS-CCST----------------------------------GGGTTCEEEE
T ss_pred CccCHHHhcceeeccccccCCcEEEEEeCCC-CCCH----------------------------------HHHCCCEEEE
Confidence 89999999999999999999 9999999874 2211 3333321100
Q ss_pred cchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHH
Q 043468 504 TGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYAS 583 (720)
Q Consensus 504 ~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~ 583 (720)
... +.|...|.. . ..+.++....+.+++++
T Consensus 118 ~~g---------------------------------~~~~~~l~~----------------~-~~~~~~~~~~~~~~~~~ 147 (229)
T 2y7i_A 118 ENG---------------------------------TTHQRYLQD----------------K-QQAITPVAYDSYLNAFT 147 (229)
T ss_dssp ETT---------------------------------SHHHHHHHH----------------H-CTTSEEEEESCHHHHHH
T ss_pred ecC---------------------------------CcHHHHHHH----------------h-CCCCeEEecCCHHHHHH
Confidence 000 001111100 0 01345556666789999
Q ss_pred HHhcCcccEEEechhHHHHHHHhcCCCcEeeCCeeec-----CceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHh
Q 043468 584 DLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKV-----GGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSM 657 (720)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~ 657 (720)
+|.+|++|+++.+...+.+++++.. .+.+++..+.. .+++++++|+++ +++.+|++|.++.++|.++++.++|
T Consensus 148 ~l~~grvDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~ 226 (229)
T 2y7i_A 148 DLKNNRLEGVFGDVAAIGKWLKNNP-DYAIMDERASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKW 226 (229)
T ss_dssp HHHTTSCSEEEEEHHHHHHHHTTCT-TEEECSCCBCCTTTSCCCBCCEECTTCHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHcCCcCEEEechHHHHHHHHhCC-CeEEeccccccccccccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 9999999999999999998888766 47777654432 378899999988 9999999999999999999999999
Q ss_pred cC
Q 043468 658 IA 659 (720)
Q Consensus 658 ~~ 659 (720)
+.
T Consensus 227 ~~ 228 (229)
T 2y7i_A 227 FT 228 (229)
T ss_dssp HC
T ss_pred cC
Confidence 75
No 62
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.79 E-value=8.3e-19 Score=174.13 Aligned_cols=227 Identities=18% Similarity=0.213 Sum_probs=166.7
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeee
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGD 424 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 424 (720)
..++++|++ .+.|+||.+.+.++ ++.|+++|+++.+++++|++++++.. +|.+++.+|.+|++|+++++
T Consensus 27 ~~~~l~v~~--~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~~~~ 95 (259)
T 4dz1_A 27 EGRTLNVAV--SPASPPMLFKSADG-----KLQGIDLELFSSYCQSRHCKLNITEY----AWDGMLGAVASGQADVAFSG 95 (259)
T ss_dssp TTCEEEEEE--CCCBTTTBEECTTC-----CEESHHHHHHHHHHHHHTCEEEEEEC----CHHHHHHHHHHTSSSEEEEE
T ss_pred cCCeEEEEE--CCCCCCeEEECCCC-----CEEEeHHHHHHHHHHHhCCeEEEEEc----CHHHHHHHHhCCCCCEEEEC
Confidence 457899999 35678888765444 89999999999999999988776654 49999999999999999889
Q ss_pred eeeeccceeeeeecccccccceEEEEecccC--CCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcccc
Q 043468 425 VAIVARRCQYADFTHPYTESGLVMIFPVQKS--GNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALH 502 (720)
Q Consensus 425 ~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~--~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 502 (720)
+..+++|.+.++||.||+..+..+++++++. ..++ .++.|+..-
T Consensus 96 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~i~~~----------------------------------~dL~g~~v~ 141 (259)
T 4dz1_A 96 ISITDKRKKVIDFSEPYYINSFYLVSMANHKITLNNL----------------------------------NELNKYSIG 141 (259)
T ss_dssp EECCHHHHTTEEECCCSEEEEEEEEEETTSCCCCCSG----------------------------------GGGGGSCEE
T ss_pred CcCCHHHhhccccccchhhCceEEEEEcCCCCCCCCH----------------------------------HHhCCCEEE
Confidence 9999999999999999999999999987642 1111 233332110
Q ss_pred ccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHH
Q 043468 503 QTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYA 582 (720)
Q Consensus 503 ~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~ 582 (720)
... .+.|...+...+.... +.. ..++....+.++++
T Consensus 142 v~~---------------------------------g~~~~~~l~~~~~~~g----~~~-------~~~~~~~~~~~~~~ 177 (259)
T 4dz1_A 142 YPR---------------------------------GMAYSDLIKNDLEPKG----YYS-------LSKVKLYPTYNETM 177 (259)
T ss_dssp EET---------------------------------TSTHHHHHHHHTGGGT----SCC-------GGGCEEESSHHHHH
T ss_pred EeC---------------------------------CcHHHHHHHHhccccc----ccc-------cceeEecCCHHHHH
Confidence 000 0011111111110000 000 02334445678899
Q ss_pred HHHhcCcccEEEechhHHHHHHHhcCCCcEeeCCeeecCceeeEecCCCCChHHHHHHHhcccccCcHHHHHHHhcCCC
Q 043468 583 SDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIASE 661 (720)
Q Consensus 583 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~~~~~~~~~~~~ 661 (720)
++|.+|++|+++.+...+.++.++....+..........+++++++|++++++.||++|.+ ..++.++++.++|...+
T Consensus 178 ~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~~~ 255 (259)
T 4dz1_A 178 ADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWMKHH 255 (259)
T ss_dssp HHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHH-HCHHHHHHHHHHHTCC-
T ss_pred HHHHcCCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChHHHHHHHHHHHh-CCCeehHHHHHHHHhhc
Confidence 9999999999999999988887776444666666666788999999999999999999999 88889999999998764
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.79 E-value=2.4e-19 Score=179.25 Aligned_cols=221 Identities=14% Similarity=0.189 Sum_probs=165.1
Q ss_pred CCCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEee
Q 043468 344 AKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVG 423 (720)
Q Consensus 344 ~~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 423 (720)
...++|+|++. +.|+||.+.+.+ ++.+++.|+++|+++++++++|++++++..+ |.+++.+|.+|++|++++
T Consensus 18 ~~~~~l~v~~~--~~~pP~~~~~~~--~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~~----~~~~~~~l~~G~~D~~~~ 89 (271)
T 2iee_A 18 KDKGKIVVATS--GTLYPTSYHDTD--SGSDKLTGYEVEVVREAAKRLGLKVEFKEMG----IDGMLTAVNSGQVDAAAN 89 (271)
T ss_dssp HHHTEEEEEEC--SCBTTTBEEETT--TTCCEEECHHHHHHHHHHHHTTCEEEEEECC----STTHHHHHHHTSSSEECS
T ss_pred ccCCeEEEEEC--CCCCCeeEeCCC--CCCCCceeeHHHHHHHHHHHcCCeEEEEECC----HHHHHHHHHCCCcCEEEe
Confidence 34678999994 578888876543 1114899999999999999999887776653 889999999999999988
Q ss_pred eeeeeccceeeeeecccccccceEEEEecccC--CCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCccc
Q 043468 424 DVAIVARRCQYADFTHPYTESGLVMIFPVQKS--GNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSAL 501 (720)
Q Consensus 424 ~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~--~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~ 501 (720)
++..+++|.+.+.||.|++....++++++... ..++ .++.|+..
T Consensus 90 ~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~~i~~~----------------------------------~dL~g~~i 135 (271)
T 2iee_A 90 DIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTL----------------------------------KDLKGKKA 135 (271)
T ss_dssp SCBCCHHHHTTEEECCCSEEEEEEEEECTTTGGGCSSG----------------------------------GGGTTCEE
T ss_pred CCcCChhhccceEEeecceeCCeEEEEECCCCCCCCCH----------------------------------HHhCCCEE
Confidence 88899999999999999999999999998742 1111 23333211
Q ss_pred cccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchH
Q 043468 502 HQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDY 581 (720)
Q Consensus 502 ~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~ 581 (720)
-.... +.|.. .|.+.+.++....+.++.
T Consensus 136 ~v~~g---------------------------------~~~~~-------------------~l~~~~~~~~~~~~~~~~ 163 (271)
T 2iee_A 136 AGAAT---------------------------------TVYME-------------------VARKYGAKEVIYDNATNE 163 (271)
T ss_dssp ESCTT---------------------------------SHHHH-------------------HHHHTTCEEEECSSCCHH
T ss_pred EEeCC---------------------------------ccHHH-------------------HHHHcCCceEEeCChhhH
Confidence 00000 00110 011112244455556778
Q ss_pred --HHHHhcCcccEEEechhHHHHHHH-hc-CCCcEee-CCeeecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHH
Q 043468 582 --ASDLKSRKTGAVFLEVAEAKIFLA-KY-CKGFTVA-GPTYKVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELET 655 (720)
Q Consensus 582 --~~~l~~~~~~~~~~~~~~~~~~~~-~~-~~~l~~~-~~~~~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~ 655 (720)
+++|.+|++| ++.+.....+++. +. ...+.++ +..+...+++++++|+++ +++.||++|.+|.++|.++++.+
T Consensus 164 ~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~ 242 (271)
T 2iee_A 164 QYLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSK 242 (271)
T ss_dssp HHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETTCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCCCHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999 8887777766665 43 3347776 666777888999999988 99999999999999999999999
Q ss_pred HhcC
Q 043468 656 SMIA 659 (720)
Q Consensus 656 ~~~~ 659 (720)
+|+.
T Consensus 243 k~~~ 246 (271)
T 2iee_A 243 QFFN 246 (271)
T ss_dssp HHTT
T ss_pred HhCC
Confidence 9998
No 64
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.79 E-value=6.9e-19 Score=170.93 Aligned_cols=220 Identities=20% Similarity=0.294 Sum_probs=163.3
Q ss_pred CCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeeee
Q 043468 347 QPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVA 426 (720)
Q Consensus 347 ~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~ 426 (720)
++|+|++. +++||.+. .++ ++.|+++|+++.+++++|+++++...+ +|.+++.+|.+|++|++++++.
T Consensus 3 ~~l~v~~~---~~~P~~~~-~~g-----~~~G~~~dl~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 70 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-NKG-----ELSGFSIDLWRSIATQIGIESKLIEYS---SVPELISAIKDNKVNLGIAAIS 70 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C--------CBSHHHHHHHHHHHHHTCCEEEEECS---SHHHHHHHHHTTSCSEECSSCB
T ss_pred ceEEEEec---CCCCeEEe-cCC-----ceEEEeHHHHHHHHHHhCCcEEEEEcC---CHHHHHHHHHCCCcCEEEeccc
Confidence 68999995 36777665 333 789999999999999999998777765 5899999999999999988888
Q ss_pred eeccceeeeeecccccccceEEEEecccCC-CcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCccccccc
Q 043468 427 IVARRCQYADFTHPYTESGLVMIFPVQKSG-NKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTG 505 (720)
Q Consensus 427 ~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~-~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 505 (720)
.+++|.+.+.||.|++....++++++.+.. ... ....++.|.......
T Consensus 71 ~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~dL~g~~i~~~~ 119 (228)
T 2pyy_A 71 ITAEREQNFDFSLPIFASGLQIMVRNLESGTGDI-------------------------------RSIDDLPGKVVATTA 119 (228)
T ss_dssp CCHHHHHHSEECSCSEEEEEEEEEEC-----CCC-------------------------------CSGGGCTTCEEEEET
T ss_pred cCHHHHccceecccchhcceEEEEECCccccCCc-------------------------------CCHHHcCCCeEEEEc
Confidence 999999999999999999999999887410 000 011223332100000
Q ss_pred hhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHHHH
Q 043468 506 TFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDL 585 (720)
Q Consensus 506 ~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~~l 585 (720)
. ..+ -+-|.+.+.++....+.++.+++|
T Consensus 120 g---------------------------------~~~-------------------~~~l~~~~~~~~~~~~~~~~~~~l 147 (228)
T 2pyy_A 120 G---------------------------------STA-------------------ATYLREHHISVLEVPKIEEAYKAL 147 (228)
T ss_dssp T---------------------------------SHH-------------------HHHHHHTTCEEEEESSHHHHHHHH
T ss_pred C---------------------------------cHH-------------------HHHHHHcCCceEecCCHHHHHHHH
Confidence 0 000 001112345565666678999999
Q ss_pred hcCcccEEEechhHHHHHHHhc-CCCcEeeCCeeecCceeeEecCCCCChHHHHHHHhcccccCcHHHHHHHhcCCC
Q 043468 586 KSRKTGAVFLEVAEAKIFLAKY-CKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIASE 661 (720)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~~~~~~~~~~~~ 661 (720)
.+|++|+++.+...+.+++++. ...+.+++..+...+++++++|++++.+.+|++|..+.++|.++++.++|+...
T Consensus 148 ~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~~ 224 (228)
T 2pyy_A 148 QTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWFDPK 224 (228)
T ss_dssp HTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHHHHHHHHHHHTTHHHHHHHHHHCC-
T ss_pred HcCCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHHHHHHHHHHhCCcHHHHHHHHcCCc
Confidence 9999999999999988888776 234777776677778899999999999999999999999999999999998753
No 65
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.75 E-value=2.9e-18 Score=169.97 Aligned_cols=220 Identities=14% Similarity=0.137 Sum_probs=158.7
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCc-cceEEecCCCCHHHHHHHHHhCCccEEee
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFY-LPYNFIPFNGSYDDLVKQLYLNNFAGVVG 423 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 423 (720)
..++|+|++. +++||.+.+.++ ++.|+++|+++.+++++|++ +++...+ |.+++.++.+|++|++++
T Consensus 11 ~~~~l~v~~~---~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~~~----~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 11 EQGFARIAIA---NEPPFTAVGADG-----KVSGAAPDVAREIFKRLGVADVVASISE----YGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp HHTEEEEEEC---CCTTTCEECTTC-----CEESHHHHHHHHHHHHTTCCEEEEEECC----GGGHHHHHHTTSCSEECS
T ss_pred cCCeEEEEcC---CCCCeeEECCCC-----CcccccHHHHHHHHHHcCCCeeeEEeCC----HHHHHHHHHCCCcCEEEe
Confidence 3578999994 577777765433 89999999999999999988 7776543 899999999999999988
Q ss_pred eeeeeccceeeeeecccccccceEEEEecccC--CCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCcc---C
Q 043468 424 DVAIVARRCQYADFTHPYTESGLVMIFPVQKS--GNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELT---G 498 (720)
Q Consensus 424 ~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~--~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~---~ 498 (720)
++..+++|.+.+.||.|++.....+++++... ..++ .++. |
T Consensus 79 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~----------------------------------~dL~~~~g 124 (257)
T 2q88_A 79 GLFMKPERCAAVAYSQPILCDAEAFALKKGNPLGLKSY----------------------------------KDIADNPD 124 (257)
T ss_dssp CCBCCHHHHTTSEECSCCCEECEEEEEETTCTTCCCBH----------------------------------HHHHHCTT
T ss_pred cccCCHHHHhccccccchhcCceEEEEECCCccCCCCH----------------------------------HHHhccCC
Confidence 89999999999999999999999999998752 1111 1111 1
Q ss_pred ccccccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCc
Q 043468 499 SALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCL 578 (720)
Q Consensus 499 ~~~~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~ 578 (720)
+..-.. + .+.|...|. ... ..+.++....+.
T Consensus 125 ~~i~~~---------------~------------------g~~~~~~l~----~~~------------~~~~~~~~~~~~ 155 (257)
T 2q88_A 125 AKIGAP---------------G------------------GGTEEKLAL----EAG------------VPRDRVIVVPDG 155 (257)
T ss_dssp CCEEEC---------------T------------------TSHHHHHHH----HTT------------CCGGGEEECSSH
T ss_pred ceEEEE---------------C------------------CcccHHHHH----hcC------------CCCceEEEcCCH
Confidence 100000 0 000100010 000 001134444557
Q ss_pred chHHHHHhcCcccEEEechhHHHHHHHhcC-CCcEeeCCeee--cCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHH
Q 043468 579 GDYASDLKSRKTGAVFLEVAEAKIFLAKYC-KGFTVAGPTYK--VGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELE 654 (720)
Q Consensus 579 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~--~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~ 654 (720)
++++++|.+|++|+++.+...+.+++++.. ..+..+..... ..+++++++|+++ +.+.||++|.++.++|.++++.
T Consensus 156 ~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~~~~~g~~~~i~ 235 (257)
T 2q88_A 156 QSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKII 235 (257)
T ss_dssp HHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 889999999999999999999998888763 33554443211 2456789999876 9999999999999999999999
Q ss_pred HHhcC
Q 043468 655 TSMIA 659 (720)
Q Consensus 655 ~~~~~ 659 (720)
++|.-
T Consensus 236 ~k~~~ 240 (257)
T 2q88_A 236 EPYGF 240 (257)
T ss_dssp GGGTC
T ss_pred HHhCC
Confidence 99943
No 66
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.75 E-value=1.7e-17 Score=165.88 Aligned_cols=223 Identities=21% Similarity=0.262 Sum_probs=166.6
Q ss_pred CCCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEee
Q 043468 344 AKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVG 423 (720)
Q Consensus 344 ~~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 423 (720)
...++|+|++. +.++||.+.+ ++ ++.|+++|+++.+++++|++++++..+ |.+++.+|.+|++|++++
T Consensus 39 ~~~~~l~v~~~--~~~~P~~~~~-~g-----~~~G~~~dl~~~i~~~~g~~v~~~~~~----~~~~~~~l~~G~~D~~~~ 106 (272)
T 2pvu_A 39 ATKKKVVVGTD--AAFAPFEYMQ-KG-----KIVGFDVDLLDAVMKAAGLDYELKNIG----WDPLFASLQSKEVDMGIS 106 (272)
T ss_dssp CCCCCEEEEEC--CCBTTTBEEE-TT-----EEESHHHHHHHHHHHHHTCCEEEEECC----HHHHHHHHHHTSSSEECS
T ss_pred ccCCeEEEEEC--CCCCCeEEec-CC-----eEEEEHHHHHHHHHHHhCCceEEEECC----HHHHHHHHhCCCCCEEEe
Confidence 45688999994 5678887763 33 899999999999999999887766543 999999999999999988
Q ss_pred eeeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCccccc
Q 043468 424 DVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQ 503 (720)
Q Consensus 424 ~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 503 (720)
++..+++|.+.+.||.|++.....+++++.....++ .++.|+..-.
T Consensus 107 ~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~i~~~----------------------------------~dL~g~~i~~ 152 (272)
T 2pvu_A 107 GITITDERKQSYDFSDPYFEATQVILVKQGSPVKNA----------------------------------LDLKGKTIGV 152 (272)
T ss_dssp SCBCCHHHHTTEEECSCCEEECEEEEEETTCCCCSG----------------------------------GGGTTSCEEE
T ss_pred CCcCCHHHHhcCccchhhhccceEEEEECCCCCCCH----------------------------------HHhCCCeEEE
Confidence 888999999999999999999999999987532222 2333321100
Q ss_pred cchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHH
Q 043468 504 TGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYAS 583 (720)
Q Consensus 504 ~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~ 583 (720)
... +.+...|...+ ....++....+.++.++
T Consensus 153 ~~g---------------------------------~~~~~~l~~~~----------------~~~~~i~~~~~~~~~~~ 183 (272)
T 2pvu_A 153 QNA---------------------------------TTGQEAAEKLF----------------GKGPHIKKFETTVVAIM 183 (272)
T ss_dssp ETT---------------------------------SHHHHHHHHHH----------------CSSTTEEEESSHHHHHH
T ss_pred EcC---------------------------------chHHHHHHHhc----------------CCCCeEEEcCCHHHHHH
Confidence 000 01111111110 00223444456788999
Q ss_pred HHhcCcccEEEechhHHHHHHHhc-CCCcEeeCCee--ecCceeeEecCCCCChHHHHHHHhcccccCcHHHHHHHhcCC
Q 043468 584 DLKSRKTGAVFLEVAEAKIFLAKY-CKGFTVAGPTY--KVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIAS 660 (720)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~--~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~~~~~~~~~~~ 660 (720)
+|.+|++|+++.+...+.+++++. ...+.+++... ...+++++++|+..+++.+|++|..+.++|.++++.++|+..
T Consensus 184 ~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 184 ELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGK 263 (272)
T ss_dssp HHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHcCCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 999999999999999998888765 22367776553 556788999999449999999999999999999999999876
Q ss_pred C
Q 043468 661 E 661 (720)
Q Consensus 661 ~ 661 (720)
.
T Consensus 264 ~ 264 (272)
T 2pvu_A 264 E 264 (272)
T ss_dssp C
T ss_pred C
Confidence 4
No 67
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.74 E-value=5.5e-18 Score=170.43 Aligned_cols=219 Identities=17% Similarity=0.284 Sum_probs=167.7
Q ss_pred CCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeee
Q 043468 346 DQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDV 425 (720)
Q Consensus 346 ~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 425 (720)
.++|+|++. +.|+||.+.+.++ .+.|+.+|+++.+++++|++++++..+ |..++.+|.+|++|++++++
T Consensus 56 ~~~l~v~~~--~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~G~~v~~~~~~----~~~~~~~l~~G~~D~~~~~~ 124 (283)
T 2yln_A 56 KGTVTVGTE--GTYAPFTYHDKDG-----KLTGYDVEVTRAVAEKLGVKVEFKETQ----WDSMMAGLKAGRFDVVANQV 124 (283)
T ss_dssp TCEEEEEEC--SEETTTEEECTTS-----CEESHHHHHHHHHHHHHTCEEEEEECC----GGGHHHHHHHTSCSEECSSC
T ss_pred CCeEEEEEC--CCCCCeeEECCCC-----CEeeehHHHHHHHHHHcCCceEEEECC----HHHHHHHHHCCCcCEEEecC
Confidence 468999993 4588888865433 899999999999999999887666543 89999999999999998888
Q ss_pred ee-eccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcccccc
Q 043468 426 AI-VARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQT 504 (720)
Q Consensus 426 ~~-t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 504 (720)
.. +++|.+.++|+.||+.....+++++.....++ .++.|+.....
T Consensus 125 ~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~~i~s~----------------------------------~dL~G~~v~v~ 170 (283)
T 2yln_A 125 GLTSPERQATFDKSEPYSWSGAVLVAHNDSNIKSI----------------------------------ADIKGVKTAQS 170 (283)
T ss_dssp CCCSHHHHHHEEECSCSEEECEEEEEETTCSCCSG----------------------------------GGCTTSEEEEC
T ss_pred ccCChhhhcceEeccCeeeecEEEEEECCCCCCCH----------------------------------HHhCCCEEEEe
Confidence 87 99999999999999999999999987532221 33433211000
Q ss_pred chhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHHH
Q 043468 505 GTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASD 584 (720)
Q Consensus 505 ~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~~ 584 (720)
.. +.+.. .|.+.+.++....+..+.+++
T Consensus 171 ~g---------------------------------~~~~~-------------------~l~~~~~~~~~~~~~~~~~~~ 198 (283)
T 2yln_A 171 LT---------------------------------SNYGE-------------------KAKAAGAQLVPVDGLAQSLTL 198 (283)
T ss_dssp TT---------------------------------SHHHH-------------------HHHHTTCEEEECSSHHHHHHH
T ss_pred cC---------------------------------chHHH-------------------HHHHcCCeEEEeCCHHHHHHH
Confidence 00 00000 011113455555567889999
Q ss_pred HhcCcccEEEechhHHHHHHHhc-CCCcEeeC-Ceee-cCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhcCC
Q 043468 585 LKSRKTGAVFLEVAEAKIFLAKY-CKGFTVAG-PTYK-VGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMIAS 660 (720)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~~~~-~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~~~ 660 (720)
|.+|++|+++.+...+.+++++. ...+.+++ ..+. ..+++++++|+++ +.+.||++|.++.++|.++++.++|+..
T Consensus 199 l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~l~~~i~~al~~l~~~g~~~~i~~k~~~~ 278 (283)
T 2yln_A 199 IEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGK 278 (283)
T ss_dssp HHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 99999999999999998888776 33477776 6666 6788999999987 9999999999999999999999999875
Q ss_pred C
Q 043468 661 E 661 (720)
Q Consensus 661 ~ 661 (720)
.
T Consensus 279 ~ 279 (283)
T 2yln_A 279 D 279 (283)
T ss_dssp C
T ss_pred C
Confidence 4
No 68
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.74 E-value=1.2e-17 Score=166.65 Aligned_cols=222 Identities=20% Similarity=0.256 Sum_probs=163.6
Q ss_pred CCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeee
Q 043468 346 DQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDV 425 (720)
Q Consensus 346 ~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 425 (720)
.++++|++. +.++||.+.+. .++++++.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++++++
T Consensus 38 ~~~l~v~~~--~~~~P~~~~~~--~~~~g~~~G~~~dl~~~~~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~~~~~ 109 (269)
T 4i62_A 38 KGKLVVALN--PDFAPFEYQKV--VDGKNQIVGSDIELAKAIATELGVELELSPM----SFDNVLASVQSGKADLAISGV 109 (269)
T ss_dssp HTEEEEEEC--SCBTTTBEEEE--ETTEEEEESHHHHHHHHHHHHHTCEEEEEEC----CHHHHHHHHHTTSCSEECSSC
T ss_pred CCeEEEEec--CCCCCceeecc--cCCCCcEeeecHHHHHHHHHHHCCceEEEEc----CHHHHHHHHhCCCccEEecCC
Confidence 458999994 56778877211 1124589999999999999999988776653 499999999999999998889
Q ss_pred eeeccceeeeeecccccccceEEEEeccc--CCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCccccc
Q 043468 426 AIVARRCQYADFTHPYTESGLVMIFPVQK--SGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQ 503 (720)
Q Consensus 426 ~~t~~r~~~~~fs~p~~~~~~~~~v~~~~--~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 503 (720)
..+++|.+.+.||.|++.....+++++.+ ...++ .++.|+..-.
T Consensus 110 ~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~----------------------------------~dL~g~~i~~ 155 (269)
T 4i62_A 110 SKTDERSKVFDFSTPYYTAKNKLIVKKSDLATYQSV----------------------------------NDLAQKKVGA 155 (269)
T ss_dssp BCCHHHHTTEEECSCCEECCEEEEEEGGGTTTCSSG----------------------------------GGGC-CEEEE
T ss_pred cCCHhHhhceecccchhhcceEEEEECCccccccCH----------------------------------HHhCCCeEEE
Confidence 99999999999999999999999999873 11111 2333321000
Q ss_pred cchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHHH
Q 043468 504 TGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYAS 583 (720)
Q Consensus 504 ~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~~ 583 (720)
... +.+...+...+ .+.++....+.++.++
T Consensus 156 ~~g---------------------------------~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~~ 185 (269)
T 4i62_A 156 QKG---------------------------------SIQETMAKDLL-----------------QNSSLVSLPKNGNLIT 185 (269)
T ss_dssp ETT---------------------------------SHHHHHHHHHC-----------------TTSEEEEESCHHHHHH
T ss_pred ecC---------------------------------chHHHHHHHhC-----------------CCCcEEecCCHHHHHH
Confidence 000 00111111000 1335555556789999
Q ss_pred HHhcCcccEEEechhHHHHHHHhcCCCcEeeCCee---ecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhcC
Q 043468 584 DLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTY---KVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMIA 659 (720)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~~ 659 (720)
+|.+|++|+++.+...+.+++++... +......+ ...+++++++|++| +.+.+|++|.++.++|.++++.++|+.
T Consensus 186 ~l~~g~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 264 (269)
T 4i62_A 186 DLKSGQVDAVIFEEPVAKGFVENNPD-LAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFK 264 (269)
T ss_dssp HHHTTSSSEEEEEHHHHHHHHHHCTT-EEECSCCCCC-CCCEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHcCCCCEEEeChHHHHHHHHhCCC-CeEEeeccCCCcccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHhC
Confidence 99999999999999999888887644 44443333 25678999999988 999999999999999999999999986
Q ss_pred C
Q 043468 660 S 660 (720)
Q Consensus 660 ~ 660 (720)
.
T Consensus 265 ~ 265 (269)
T 4i62_A 265 A 265 (269)
T ss_dssp H
T ss_pred C
Confidence 5
No 69
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.73 E-value=9.9e-18 Score=169.14 Aligned_cols=226 Identities=18% Similarity=0.159 Sum_probs=168.0
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHh----CC---CccceEEecCCCCHHHHHHHHHhCC
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEK----LP---FYLPYNFIPFNGSYDDLVKQLYLNN 417 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~----l~---~~~~~~~~~~~~~~~~~~~~l~~g~ 417 (720)
..++|+|++. +.++||.+.+.++ ++.|+++|+++.+++. +| +++++... .|..++.+|.+|+
T Consensus 15 ~~~~l~v~~~--~~~~P~~~~~~~g-----~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~----~~~~~~~~l~~g~ 83 (287)
T 2vha_A 15 KNGVIVVGHR--ESSVPFSYYDNQQ-----KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI----TSQNRIPLLQNGT 83 (287)
T ss_dssp HHTEEEEEEC--SEETTTEEECSSS-----CEESHHHHHHHHHHHHHHHHTTCTTCEEEEEEC----CTTTHHHHHHTTS
T ss_pred hCCeEEEEEc--CCCCCceEECCCC-----CcccccHHHHHHHHHHHHHhcCCCCceEEEEEC----CHHHHHHHHHCCC
Confidence 4578999993 5688888865443 8999999999999976 56 66555543 3788999999999
Q ss_pred ccEEeeeeeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCcc
Q 043468 418 FAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELT 497 (720)
Q Consensus 418 ~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~ 497 (720)
+|++++++..+++|.+.+.||.|++..+..+++++.....++ .++.
T Consensus 84 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~i~sl----------------------------------~dL~ 129 (287)
T 2vha_A 84 FDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDF----------------------------------ADLK 129 (287)
T ss_dssp CSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTSSCCSG----------------------------------GGGT
T ss_pred eeEEeccccCCcchhhcccccceeeecceEEEEECCCCCCCH----------------------------------HHcC
Confidence 999988889999999999999999999999999987532222 2333
Q ss_pred CccccccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecC
Q 043468 498 GSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRC 577 (720)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~ 577 (720)
|+..-... .+.|...+...+.. ...+.++....+
T Consensus 130 g~~v~~~~---------------------------------g~~~~~~l~~~~~~-------------~~~~~~~~~~~~ 163 (287)
T 2vha_A 130 GKAVVVTS---------------------------------GTTSEVLLNKLNEE-------------QKMNMRIISAKD 163 (287)
T ss_dssp TCEEEEET---------------------------------TSHHHHHHHHHHHH-------------TTCCCEEEEESS
T ss_pred CCEEEEeC---------------------------------CCcHHHHHHHHhhc-------------cCCCceEEEcCC
Confidence 32100000 00111111111100 001345555666
Q ss_pred cchHHHHHhcCcccEEEechhHHHHHHHhc--CCCcEeeCCeeecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHH
Q 043468 578 LGDYASDLKSRKTGAVFLEVAEAKIFLAKY--CKGFTVAGPTYKVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELE 654 (720)
Q Consensus 578 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~ 654 (720)
.++++++|.+|++|+++.+...+.+++++. ...+.+++..+...+++++++|+++ +++.+|++|.++.++|.++++.
T Consensus 164 ~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~ 243 (287)
T 2vha_A 164 HGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWF 243 (287)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeCCCHHHHHHHHHHHHHHHhCchHHHHH
Confidence 789999999999999999999998888764 2347777777777788999999987 9999999999999999999999
Q ss_pred HHhcCCC
Q 043468 655 TSMIASE 661 (720)
Q Consensus 655 ~~~~~~~ 661 (720)
++|+...
T Consensus 244 ~k~~~~~ 250 (287)
T 2vha_A 244 DKWFKNP 250 (287)
T ss_dssp HHHHHSC
T ss_pred HHHcCCC
Confidence 9999865
No 70
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.73 E-value=1.3e-17 Score=166.25 Aligned_cols=219 Identities=17% Similarity=0.234 Sum_probs=167.7
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeee
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGD 424 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 424 (720)
..++++|++ .+.++||.+.+.++ ++.|+++|+++.+++++|.++++... +|.+++.++.+|++|+++++
T Consensus 29 ~~~~l~v~~--~~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~~~~ 97 (268)
T 3qax_A 29 RNRIWIVGT--NATYPPFEYVDAQG-----EVVGFDIDLAKAISEKLGKQLEVREF----AFDALILNLKKHRIDAILAG 97 (268)
T ss_dssp --CEEEEEE--CSCBTTTBEECTTS-----CEESHHHHHHHHHHHHHTCEEEEEEC----CGGGHHHHHHHTSSSEECSC
T ss_pred cCCeEEEEE--CCCCCCceEECCCC-----CEEEEEHHHHHHHHHHhCCeEEEEec----CHHHHHHHHhCCCccEEeec
Confidence 356899998 45677887765443 89999999999999999988666654 48999999999999999888
Q ss_pred eeeeccceeeeeeccccc--ccceEEEEeccc-CCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCccc
Q 043468 425 VAIVARRCQYADFTHPYT--ESGLVMIFPVQK-SGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSAL 501 (720)
Q Consensus 425 ~~~t~~r~~~~~fs~p~~--~~~~~~~v~~~~-~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~ 501 (720)
+..+++|.+.++| .|++ ..+..+++++.+ ...++ .+++|+..
T Consensus 98 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~~i~~~----------------------------------~dL~g~~i 142 (268)
T 3qax_A 98 MSITPSRQKEIAL-LPYYGDEVQELMVVSKRSLETPVL----------------------------------PLTQYSSV 142 (268)
T ss_dssp CBCCHHHHTTSEE-EEEECCCBCEEEEEEETTSCSCCC----------------------------------CGGGSSCE
T ss_pred CccCHhHhcceee-ecceecccceEEEEECCCCCCCCH----------------------------------HHhCCCEE
Confidence 9999999999999 9999 889999999873 22221 33443311
Q ss_pred cccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchH
Q 043468 502 HQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDY 581 (720)
Q Consensus 502 ~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~ 581 (720)
..... +.+...+.. ..+.++....+.++.
T Consensus 143 ~~~~g---------------------------------~~~~~~l~~------------------~~~~~~~~~~~~~~~ 171 (268)
T 3qax_A 143 AVQTG---------------------------------TYQEHYLLS------------------QPGICVRSFDSTLEV 171 (268)
T ss_dssp EEETT---------------------------------SHHHHHHHT------------------STTCCEEEESCHHHH
T ss_pred EEecC---------------------------------cHHHHHHHh------------------CCCceEEecCCHHHH
Confidence 00000 001111110 013345555667899
Q ss_pred HHHHhcCcccEEEechhHHHHHHHhcCCCcEeeCCeeecCc----eeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHH
Q 043468 582 ASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGG----LGFAFPKGSP-LLPSVIEALLKVSESGKLRELETS 656 (720)
Q Consensus 582 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~ 656 (720)
+++|.+|++|+++.+...+.++.++... +.+++..+...+ ++++++|+++ +++.+|++|.++.++|.++++.++
T Consensus 172 ~~~l~~G~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k 250 (268)
T 3qax_A 172 IMEVRYGKSPVAVLEPSVGRVVLKDFPN-LVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKK 250 (268)
T ss_dssp HHHHHTTSSSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCBCCEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHcCCCCEEEecHHHHHHHHHhCCC-cEEecCccCcccccccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence 9999999999999999999998887655 777776677677 8999999988 999999999999999999999999
Q ss_pred hcCCC
Q 043468 657 MIASE 661 (720)
Q Consensus 657 ~~~~~ 661 (720)
|+...
T Consensus 251 ~~~~~ 255 (268)
T 3qax_A 251 WQLSE 255 (268)
T ss_dssp TTCSC
T ss_pred HcCCc
Confidence 98765
No 71
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.73 E-value=1.5e-17 Score=168.33 Aligned_cols=219 Identities=16% Similarity=0.163 Sum_probs=168.1
Q ss_pred CCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhC---CCccceEEecCCCCHHHHHHHHHhCCccEEe
Q 043468 346 DQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKL---PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVV 422 (720)
Q Consensus 346 ~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l---~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 422 (720)
.++++|++. +.++||.+.+.++ ...|+++|+++.+++++ |+++++...+ |.+++..+.+|++|+++
T Consensus 43 ~~~l~v~~~--~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~~~~g~~~~~~~~~----~~~~~~~l~~G~~D~~~ 111 (292)
T 1xt8_A 43 NGVVRIGVF--GDKPPFGYVDEKG-----NNQGYDIALAKRIAKELFGDENKVQFVLVE----AANRVEFLKSNKVDIIL 111 (292)
T ss_dssp HSSEEEEEC--SEETTTEEECTTS-----CEESHHHHHHHHHHHHHHSCTTCEEEEECC----GGGHHHHHHTTSCSEEC
T ss_pred CCeEEEEEC--CCCCCeeEECCCC-----CEeeEhHHHHHHHHHHhccCCceEEEEEcC----HHHHHHHHhCCCeeEEe
Confidence 468999994 5688888765433 89999999999999999 9887776544 78999999999999998
Q ss_pred eeeeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcccc
Q 043468 423 GDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALH 502 (720)
Q Consensus 423 ~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 502 (720)
+++..+++|.+.+.||.|++.....+++++.....++ .++.|+...
T Consensus 112 ~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~i~~~----------------------------------~dL~g~~i~ 157 (292)
T 1xt8_A 112 ANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSV----------------------------------EDLKDKTLL 157 (292)
T ss_dssp SSCBCCHHHHTTEEECCCCEEEEEEEEEETTCCCCSS----------------------------------GGGTTSEEE
T ss_pred ecCCCCcchhcceeeeccceecceEEEEECCCCCCCH----------------------------------HHhCCCEEE
Confidence 8888999999999999999999999999987522221 333332110
Q ss_pred ccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHH
Q 043468 503 QTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYA 582 (720)
Q Consensus 503 ~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~ 582 (720)
.... +.+...+...+ .+.++....+.++.+
T Consensus 158 ~~~g---------------------------------~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~ 187 (292)
T 1xt8_A 158 LNKG---------------------------------TTADAYFTQNY-----------------PNIKTLKYDQNTETF 187 (292)
T ss_dssp EETT---------------------------------SHHHHHHHHHC-----------------TTSEEEEESSHHHHH
T ss_pred EeCC---------------------------------CcHHHHHHHhC-----------------CCceEEEcCCHHHHH
Confidence 0000 00111110000 133455555678999
Q ss_pred HHHhcCcccEEEechhHHHHHHHhcCCCcEeeCCeeecCce-eeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhcCC
Q 043468 583 SDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGL-GFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMIAS 660 (720)
Q Consensus 583 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~~~ 660 (720)
++|.+|++|+++.+...+.++.++... +.+++..+...++ +++++|+++ +.+.+|++|.++.++|.++++.++|+..
T Consensus 188 ~~L~~G~vDa~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 266 (292)
T 1xt8_A 188 AALMDKRGDALSHDNTLLFAWVKDHPD-FKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKA 266 (292)
T ss_dssp HHHHTTSSSEEEEEHHHHHHHHHHCTT-EEEEEEEEEEEEEECCEEETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTGG
T ss_pred HHHHcCCccEEEecHHHHHHHHHhCCC-eEEcccccccCceeEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 999999999999999999988887654 7777766677777 999999988 9999999999999999999999999874
No 72
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.72 E-value=1.9e-17 Score=167.21 Aligned_cols=219 Identities=19% Similarity=0.194 Sum_probs=167.9
Q ss_pred CCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhC---CCccceEEecCCCCHHHHHHHHHhCCccEEe
Q 043468 346 DQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKL---PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVV 422 (720)
Q Consensus 346 ~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l---~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 422 (720)
.++|||++. +.|+||.+.+.++ ++.|+.+|+++.+++++ |+++++...+ |..++..|.+|++|+++
T Consensus 54 ~~~l~vg~~--~~~~P~~~~~~~g-----~~~G~~~dl~~~i~~~~~~~g~~v~~~~~~----~~~~~~~l~~G~~D~~~ 122 (291)
T 2yjp_A 54 KGVIRIGVF--GDKPPFGYVDANG-----KNQGFDVEIAKDLAKDLLGSPDKVEFVLTE----AANRVEYVRSGKVDLIL 122 (291)
T ss_dssp HTCEEEEEC--SEETTTEEECTTS-----CEESHHHHHHHHHHHHHHSCGGGEEEEECC----GGGHHHHHHTTSCSEEC
T ss_pred CCeEEEEEc--CCCCCceEECCCC-----CEeehHHHHHHHHHHHhccCCceEEEEEcc----HHHHHHHHhCCCeeEEE
Confidence 467999994 5688888765433 89999999999999999 9887766544 78999999999999998
Q ss_pred eeeeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcccc
Q 043468 423 GDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALH 502 (720)
Q Consensus 423 ~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 502 (720)
+++..+++|.+.+.|+.|++.....+++++.....++ .++.|+..-
T Consensus 123 ~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~~i~sl----------------------------------~dL~gk~v~ 168 (291)
T 2yjp_A 123 ANFTQTPERAEAVDFADPYMKVALGVVSPKNKPITDM----------------------------------AQLKDQTLL 168 (291)
T ss_dssp SSCBCCHHHHTTEEECCCCEEECEEEEEETTSCCCSG----------------------------------GGGTTSEEE
T ss_pred eCCCCChHHHccceeccCeeecceEEEEeCCCCCCCH----------------------------------HHhCCCEEE
Confidence 8888999999999999999999999999987522222 333332110
Q ss_pred ccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcCCeEEEecCcchHH
Q 043468 503 QTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYA 582 (720)
Q Consensus 503 ~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~~~~~~~~~~~~~~ 582 (720)
.... +.+...|...+ .+.++....+.++.+
T Consensus 169 ~~~g---------------------------------~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~ 198 (291)
T 2yjp_A 169 VNKG---------------------------------TTADAFFTKSH-----------------PEVKLLKFDQNTETF 198 (291)
T ss_dssp EETT---------------------------------SHHHHHHHHHC-----------------TTSEEEEESSHHHHH
T ss_pred EecC---------------------------------CcHHHHHHHhC-----------------CCceEEEeCCHHHHH
Confidence 0000 00111111100 123555555678899
Q ss_pred HHHhcCcccEEEechhHHHHHHHhcCCCcEeeCCeeecCce-eeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhcCC
Q 043468 583 SDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGL-GFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMIAS 660 (720)
Q Consensus 583 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~~~ 660 (720)
++|.+|++|+++.+...+.+++++... +.+++..+...++ +++++|++| +++.||++|.++.++|.++++.++|+..
T Consensus 199 ~~l~~G~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~al~~l~~~g~~~~i~~k~~~~ 277 (291)
T 2yjp_A 199 DALKDGRGVALAHDNALLWAWAKENPN-FEVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLLP 277 (291)
T ss_dssp HHHHTTSSSEEEEEHHHHHHHHHHCTT-EEEEECCSSSCEEECCEEETTCHHHHHHHHHHHHHHHHHSHHHHHHHHHTHH
T ss_pred HHHHcCCccEEEecHHHHHHHHHhCCC-eEEcCCcccCCcceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHhccc
Confidence 999999999999999999888887654 7777766777777 999999988 9999999999999999999999999874
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.59 E-value=1.6e-15 Score=150.18 Aligned_cols=215 Identities=12% Similarity=0.173 Sum_probs=156.5
Q ss_pred CCCeEEeecCCCccccceEee-eccCCCceeEEEEeHHHHHHHHHhC---CCccceEEecCCCCHHHHHHHHHhCCccEE
Q 043468 346 DQPLRIGVPIGSEFQQYVNVE-YDELRNFTYFGGFSIELFKALVEKL---PFYLPYNFIPFNGSYDDLVKQLYLNNFAGV 421 (720)
Q Consensus 346 ~~~l~v~~~~~~p~~p~~~~~-~~~~~~~~~~~G~~~dl~~~la~~l---~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~ 421 (720)
.++++|++. +.++||.+.+ .++ ++.|+++|+++.+++++ |.++++...+ |.+++..|.+|++|++
T Consensus 37 ~~~l~vg~~--~~~~p~~~~~~~~g-----~~~G~~~~l~~~~~~~~~~pg~~v~~~~~~----~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVK--NDVPHYALLDQATG-----EIKGFEVDVAKLLAKSILGDDKKIKLVAVN----AKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEEC--SEETTTEEEETTTT-----EEESHHHHHHHHHHHHHHSCTTSEEEEECC----TTTHHHHHHTTSCSEE
T ss_pred CCeEEEEEC--CCCCCeEEEECCCC-----eEEEeeHHHHHHHHHHhcCCCcceEEEEcC----HHHHHHHHhCCCCCEE
Confidence 468999994 5677887764 233 89999999999999999 9887766543 7889999999999999
Q ss_pred eeeeeeeccceeeeeecccccccceEEEEecccCCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCccc
Q 043468 422 VGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSAL 501 (720)
Q Consensus 422 ~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~ 501 (720)
++++..+++|.+.+.|+.|++.....+++++.....++ .++.+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~----------------------------------~dL~g~~i 151 (259)
T 2v25_A 106 IATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSL----------------------------------ADMKGANI 151 (259)
T ss_dssp CSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGGCCCSG----------------------------------GGCTTCEE
T ss_pred EecCccCHHHHhcCcccccceeCceEEEEeCCCCCCCH----------------------------------HHhCCCEE
Confidence 88888889999999999999999999999987532222 23333210
Q ss_pred cccchhhhhhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhcC--CeEEEecCcc
Q 043468 502 HQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSN--AIIGYSRCLG 579 (720)
Q Consensus 502 ~~~~~~~~~~~~~~g~~~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~~--~~~~~~~~~~ 579 (720)
..... +.+...+...+ .+.+ .++....+.+
T Consensus 152 ~~~~g---------------------------------~~~~~~~~~~~---------------~~~g~~~~~~~~~~~~ 183 (259)
T 2v25_A 152 GVAQA---------------------------------ATTKKAIGEAA---------------KKIGIDVKFSEFPDYP 183 (259)
T ss_dssp EEETT---------------------------------CSHHHHHHHHH---------------HHTTCCCEEEEESSHH
T ss_pred EEecC---------------------------------CchHHHHHHHH---------------HhcCCceeEEEeCCHH
Confidence 00000 00001111111 1112 2444555678
Q ss_pred hHHHHHhcCcccEEEechhHHHHHHHhcCCCcEeeCCeeecCceeeEecCCCC-ChHHHHHHHhcccccCcHHHHHHHhc
Q 043468 580 DYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSP-LLPSVIEALLKVSESGKLRELETSMI 658 (720)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~s~-~~~~in~~i~~~~~~G~~~~~~~~~~ 658 (720)
+.+++|.+|++|+++.+...+.++.++... +++..+...+++++++|+++ +.+.+|++|.++.++ ++++.++|.
T Consensus 184 ~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 184 SIKAALDAKRVDAFSVDKSILLGYVDDKSE---ILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp HHHHHHHTTSSSEEEEEHHHHTTTCCTTEE---ECSCCCSEEEECCEEETTCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred HHHHHHHcCCCcEEEecHHHHHHHHHhCCC---ccccccccceeEEEEcCCCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 899999999999999998887776655432 44555566778899999986 999999999999999 899999984
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.67 E-value=8.6e-08 Score=96.57 Aligned_cols=86 Identities=5% Similarity=0.020 Sum_probs=67.6
Q ss_pred EecCcchHHHHHhcCcccEEEechhHHHHHHHhc---CCCcEeeCCeeecCceeeEecCCCC--ChHHHHHHHhcccccC
Q 043468 574 YSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKY---CKGFTVAGPTYKVGGLGFAFPKGSP--LLPSVIEALLKVSESG 648 (720)
Q Consensus 574 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~k~s~--~~~~in~~i~~~~~~G 648 (720)
+..+.++.+..|.+|++|+++.+...+..+.++. ...++++........++++++++.| +++.+|.+|..+.++|
T Consensus 153 ~~g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~ 232 (310)
T 3n5l_A 153 LNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANA 232 (310)
T ss_dssp EECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSH
T ss_pred ccCCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCCh
Confidence 3344567889999999999999998888877764 2346766554444567899999954 9999999999999999
Q ss_pred cHHHHHHHhcC
Q 043468 649 KLRELETSMIA 659 (720)
Q Consensus 649 ~~~~~~~~~~~ 659 (720)
.+.++.+++-.
T Consensus 233 ~~~~~l~~~g~ 243 (310)
T 3n5l_A 233 EQKKVLADLQW 243 (310)
T ss_dssp HHHHHHHHTTE
T ss_pred hHHHHHHhcCc
Confidence 99888887643
No 75
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.59 E-value=2.1e-07 Score=93.99 Aligned_cols=86 Identities=6% Similarity=-0.009 Sum_probs=67.1
Q ss_pred EecCcchHHHHHhcCcccEEEechhHHHHHHHhc---CCCcEeeCCeeecCceeeEecCCCC--ChHHHHHHHhcccccC
Q 043468 574 YSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKY---CKGFTVAGPTYKVGGLGFAFPKGSP--LLPSVIEALLKVSESG 648 (720)
Q Consensus 574 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~k~s~--~~~~in~~i~~~~~~G 648 (720)
+..+..+.+..|.+|++|+++.+...+..+.++. ..+++++........++++++++-| +++.++.+|..+.++|
T Consensus 162 ~~~~~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~ 241 (321)
T 3p7i_A 162 VNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTP 241 (321)
T ss_dssp EECCHHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSH
T ss_pred ecCCHHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCH
Confidence 4444678899999999999999998888777653 2347776544444567899999944 9999999999999999
Q ss_pred cHHHHHHHhcC
Q 043468 649 KLRELETSMIA 659 (720)
Q Consensus 649 ~~~~~~~~~~~ 659 (720)
...++.+++-.
T Consensus 242 ~~~~~l~~~g~ 252 (321)
T 3p7i_A 242 EEKAVLERLGW 252 (321)
T ss_dssp HHHHHHHHHTE
T ss_pred HHHHHHHhcCc
Confidence 98888877633
No 76
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.49 E-value=1.1e-07 Score=89.04 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=64.4
Q ss_pred eEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeecc------ceeeeeecccccccceEE
Q 043468 375 YFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVAR------RCQYADFTHPYTESGLVM 448 (720)
Q Consensus 375 ~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~------r~~~~~fs~p~~~~~~~~ 448 (720)
++.|++--|.+.+. |+.+++..+. .+++.+..|++|++|+++.++..+++ |...++||.|++.....+
T Consensus 29 ~yeGlatgl~~~f~---gi~~~i~~mr---g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~yYv~~h~l 102 (231)
T 2ozz_A 29 LYEGLASGLKAQFD---GIPFYYAHMR---GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQL 102 (231)
T ss_dssp HHHHHHHHHHHTTT---TSCEEEEECS---CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCEEE
T ss_pred hhhHHHHHHHHHhc---CCcEEEEEcc---ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCccccCeEE
Confidence 77899998888884 7776666653 48999999999999999999999999 999999999999888888
Q ss_pred EEeccc
Q 043468 449 IFPVQK 454 (720)
Q Consensus 449 ~v~~~~ 454 (720)
+++++.
T Consensus 103 i~~~~~ 108 (231)
T 2ozz_A 103 ICRKGE 108 (231)
T ss_dssp EEETTC
T ss_pred EEeCCC
Confidence 888774
No 77
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=97.28 E-value=0.0011 Score=66.52 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=99.3
Q ss_pred cCCeEEEEC-CCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhC--CCeEEEEE
Q 043468 6 SQKVEAILG-PQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSW--EWHQVTVI 82 (720)
Q Consensus 6 ~~~v~aiiG-p~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~--~~~~v~ii 82 (720)
++++++||. |..+.......+.+...++|+|......+. .+.+..+.+++...++.+++++... |.++|+++
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i 129 (313)
T 2h3h_A 55 AEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIG 129 (313)
T ss_dssp HTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 467888764 544444344556666789999987653321 1234457788888888899998776 89999999
Q ss_pred EEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 83 YEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 83 ~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
..... .......+.+++.+++.|+++....... .+..+....++++.+. ++++|+. .+...+..+++++++.|..
T Consensus 130 ~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~p 207 (313)
T 2h3h_A 130 TGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDE-EDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGKV 207 (313)
T ss_dssp ESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEECS-SCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTCT
T ss_pred ECCCCCccHHHHHHHHHHHhcCCCCEEEEeecCC-CCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCCC
Confidence 87532 1112226788889999999876543222 2211334455555433 5677654 4455777899999999953
Q ss_pred CCCeEEEEeCc
Q 043468 160 EKDYIWITTDA 170 (720)
Q Consensus 160 ~~~~~~i~~~~ 170 (720)
.+...++.+.
T Consensus 208 -~dv~vvg~d~ 217 (313)
T 2h3h_A 208 -GKVKIVCFDT 217 (313)
T ss_dssp -TTSEEEEECC
T ss_pred -CCeEEEEeCC
Confidence 3444444443
No 78
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.22 E-value=0.00078 Score=68.91 Aligned_cols=72 Identities=7% Similarity=-0.094 Sum_probs=50.9
Q ss_pred HHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeee----ccceeeeeecccccccceEEEEecccC
Q 043468 383 LFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIV----ARRCQYADFTHPYTESGLVMIFPVQKS 455 (720)
Q Consensus 383 l~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t----~~r~~~~~fs~p~~~~~~~~~v~~~~~ 455 (720)
+.+.+++. |+++++......|+...++..|.+|++|+++.+.... .++.....++.++...+..+++++.+.
T Consensus 35 l~~~~~~~-G~~v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~ 110 (348)
T 3uif_A 35 FPEELRKQ-GIKVEWVPAAMASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVPKNST 110 (348)
T ss_dssp HHHHHHHT-TEEEEEEEECTTCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEETTCC
T ss_pred HHHHHHhc-CCeEEEEecccCCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEECCCC
Confidence 45566665 8776664466666678899999999999998554433 445566666667777788888887653
No 79
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.18 E-value=0.0019 Score=65.28 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=40.7
Q ss_pred HHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeee-----eccceeeeeecccccccceEEEEecccC
Q 043468 386 ALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAI-----VARRCQYADFTHPYTESGLVMIFPVQKS 455 (720)
Q Consensus 386 ~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~-----t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 455 (720)
.+.+.+ |.++++...+ ++..++..|.+|++|+++.+... ...+.-.+..+.++...+..+++++...
T Consensus 50 ~~~~~~~g~~v~~~~~~---~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s~ 122 (324)
T 3ksx_A 50 LLEQRFPRTKITWVEFP---AGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKSA 122 (324)
T ss_dssp HHHHHCTTSEEEEEEES---SHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCS
T ss_pred HHHHhcCCCceEEEECC---CHHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCCC
Confidence 345555 7776665444 57899999999999998654321 1122222233344444567888887643
No 80
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.14 E-value=0.00043 Score=70.62 Aligned_cols=84 Identities=5% Similarity=-0.068 Sum_probs=53.5
Q ss_pred CcchHHHHHhcCcccEEEechhHHHHHHHhcCCCcEeeCCee-ecCc-eeeEecCC----CC-----ChHHHHHHHhccc
Q 043468 577 CLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTY-KVGG-LGFAFPKG----SP-----LLPSVIEALLKVS 645 (720)
Q Consensus 577 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~~k~----s~-----~~~~in~~i~~~~ 645 (720)
+..+...+|.+|++|+++...+.......+...........+ ...+ ..++++++ .| +.+.+++++..+.
T Consensus 190 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~ 269 (341)
T 3un6_A 190 SPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMN 269 (341)
T ss_dssp CGGGHHHHHHTTSCSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHcCCCCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999999988887666655432222222222 2222 35666544 34 6667777777788
Q ss_pred ccCcHHHHHHHhcCC
Q 043468 646 ESGKLRELETSMIAS 660 (720)
Q Consensus 646 ~~G~~~~~~~~~~~~ 660 (720)
+++.-.++..+|+..
T Consensus 270 ~~~~~~~~~~~~~~~ 284 (341)
T 3un6_A 270 DRKQSVDIMTHHFKQ 284 (341)
T ss_dssp SHHHHHHHHHHHSSS
T ss_pred hCHHHHHHHHHHhCc
Confidence 776544777777754
No 81
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=97.11 E-value=0.0027 Score=64.35 Aligned_cols=152 Identities=11% Similarity=0.048 Sum_probs=96.5
Q ss_pred cCC--eEEEECCCCChh-hHHHHHhhccCCCcEEecccCCcccccCCC--CeEEEeecChHHHHHHHHHHHHh--CCCeE
Q 043468 6 SQK--VEAILGPQTSEE-TSSVAEIASKKQIPVLSFADATPNWATERW--PFLLQASQNQLAQMKAIAAIVQS--WEWHQ 78 (720)
Q Consensus 6 ~~~--v~aiiGp~~s~~-~~~~~~~~~~~~ip~is~~~~~~~l~~~~~--~~~fr~~p~~~~~~~~~~~~l~~--~~~~~ 78 (720)
+++ |++||....+.. .......+...++|+|......+..+...+ +.+..+..++...++.+++++.. .|.++
T Consensus 59 ~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~ 138 (332)
T 2rjo_A 59 QKTGGNLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGG 138 (332)
T ss_dssp HHTTTCEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEE
T ss_pred HCCCCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCe
Confidence 345 998876433332 224455566679999987654332111111 35677888888889999999877 79999
Q ss_pred EEEEEEcCCC-cccCcHHHHHHHHHHc-CcEEEEEEecCCCCcccHHHHHHHhhcC---CCeEEEEEcCHHHHHHHHHHH
Q 043468 79 VTVIYEDIDS-SATGILPHLSDALREA-GAEIIHVLALPHFPSSRLSEELEKLKGG---QCRVFVVHLSLELAVHLFEKA 153 (720)
Q Consensus 79 v~ii~~~~~~-g~~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~~---~~~vvil~~~~~~~~~~l~~a 153 (720)
|+++...... ....-.+.+++.+++. |+++..... ...+..+....++++.+. ++++|+ +.....+..+++++
T Consensus 139 I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al 216 (332)
T 2rjo_A 139 VVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDFQV-ADWNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEAL 216 (332)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEEEE-CTTCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHH
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEeecc-CCCCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHH
Confidence 9999865331 1122267789999998 988765322 211211333445554333 567654 45667788899999
Q ss_pred HHcCCC
Q 043468 154 NKMKMM 159 (720)
Q Consensus 154 ~~~g~~ 159 (720)
++.|+.
T Consensus 217 ~~~G~~ 222 (332)
T 2rjo_A 217 RAEGLA 222 (332)
T ss_dssp HHTTCB
T ss_pred HHcCCC
Confidence 999985
No 82
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.11 E-value=0.0022 Score=64.14 Aligned_cols=66 Identities=8% Similarity=0.002 Sum_probs=44.5
Q ss_pred HHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeec-ccee----eeeecccccccceEEEEeccc
Q 043468 386 ALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVA-RRCQ----YADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 386 ~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~-~r~~----~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+.+++ |.++++...+ ++..++..|.+|++|+++.+..... .+.+ .+.++.++...+.++++++..
T Consensus 24 ~~~~~~~g~~v~~~~~~---~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~ 95 (308)
T 2x26_A 24 LLEKRYPESKISWVEFP---AGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENS 95 (308)
T ss_dssp HHHHHCTTSEEEEEECS---SHHHHHHHHHHTSCSEEEECSHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTC
T ss_pred hHhHhcCCCceEEEECC---CcHHHHHHHHCCCCCEEcccCcHHHHHHhcCCCeEEEEEecCCCCceEEEEeCCC
Confidence 356666 7776665544 3578999999999999976543221 1111 345677777778889998764
No 83
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=96.95 E-value=0.0051 Score=60.27 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=93.7
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
++++++||....+.. ......+...++|+|......+ + +..+..++...++.+++++...|.++++++...
T Consensus 53 ~~~vdgiI~~~~~~~-~~~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~ 123 (276)
T 2h0a_A 53 AYLTDGLILASYDLT-ERFEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEE 123 (276)
T ss_dssp -CCCSEEEEESCCCC-------CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECC
T ss_pred hCCCCEEEEecCCCC-HHHHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 567888775332222 2344566778999998764321 1 455777888888899999988899999999875
Q ss_pred C-C----Cccc-CcHHHHHHHHHHcCcEEEEEEecC-CCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHc
Q 043468 86 I-D----SSAT-GILPHLSDALREAGAEIIHVLALP-HFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKM 156 (720)
Q Consensus 86 ~-~----~g~~-~~~~~~~~~~~~~g~~v~~~~~~~-~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~ 156 (720)
. . .... .-.+.+++.+++.|+++.....+. ..+..+-...+.++.+. ++++|+ +++...+..+++++++.
T Consensus 124 ~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~ 202 (276)
T 2h0a_A 124 EPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRL 202 (276)
T ss_dssp SCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTT
T ss_pred cccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHc
Confidence 4 2 2212 226788899999987643211111 11111333455555444 477765 56777888999999999
Q ss_pred CCCCC-CeEEEEeC
Q 043468 157 KMMEK-DYIWITTD 169 (720)
Q Consensus 157 g~~~~-~~~~i~~~ 169 (720)
|+.-+ +...++.+
T Consensus 203 g~~vP~di~vvg~d 216 (276)
T 2h0a_A 203 GLTPGRDVRVLGFD 216 (276)
T ss_dssp SCTTTTSEEEEEES
T ss_pred CCCCCCCeEEEEeC
Confidence 98633 34444433
No 84
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=96.91 E-value=0.0039 Score=60.94 Aligned_cols=157 Identities=11% Similarity=0.084 Sum_probs=99.6
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
++++++||-.............+...++|+|......+. +.+..+..++..-++.+++++...|.++++++...
T Consensus 56 ~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~ 129 (272)
T 3o74_A 56 ARRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDP------AHFCSVISDDRDASRQLAASLLSSAPRSIALIGAR 129 (272)
T ss_dssp HTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCT------TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred HcCCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCc------cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecC
Confidence 467887764333222344455667789999987643322 12344678888888899999988999999999875
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC---CCeEEEEEcCHHHHHHHHHHHHHcCCCCC
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG---QCRVFVVHLSLELAVHLFEKANKMKMMEK 161 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~---~~~vvil~~~~~~~~~~l~~a~~~g~~~~ 161 (720)
... ....-.+.+++.+++.|+++....... .+.++....+.++.+. ++++| ++.+...+..+++++++.|+.+.
T Consensus 130 ~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~vp~ 207 (272)
T 3o74_A 130 PELSVSQARAGGFDEALQGYTGEVRRYQGEA-FSRECGQRLMQQLIDDLGGLPDAL-VTTSYVLLQGVFDTLQARPVDSR 207 (272)
T ss_dssp TTSHHHHHHHHHHHHHTTTCCSEEEEEEESS-SSHHHHHHHHHHHHHHHTSCCSEE-EESSHHHHHHHHHHHHTSCGGGC
T ss_pred CCCccHHHHHHHHHHHHHHcCCChheeecCC-CCHHHHHHHHHHHHhcCCCCCcEE-EEeCchHHHHHHHHHHHcCCCcc
Confidence 442 112226788888999998765433222 1211333344443322 47775 45677788899999999997334
Q ss_pred CeEEEEeCc
Q 043468 162 DYIWITTDA 170 (720)
Q Consensus 162 ~~~~i~~~~ 170 (720)
+...++.+.
T Consensus 208 di~vvg~d~ 216 (272)
T 3o74_A 208 QLQLGTFGD 216 (272)
T ss_dssp CCEEEEESC
T ss_pred ceEEEEeCC
Confidence 555555544
No 85
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=96.82 E-value=0.0045 Score=61.16 Aligned_cols=157 Identities=15% Similarity=0.076 Sum_probs=97.8
Q ss_pred cCCeEEEECCCC-ChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhC-C-CeEEEEE
Q 043468 6 SQKVEAILGPQT-SEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSW-E-WHQVTVI 82 (720)
Q Consensus 6 ~~~v~aiiGp~~-s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~-~-~~~v~ii 82 (720)
+++|++||.... ..........+...++|+|......+. .+.+..+.+++...++.+++++... | .++++++
T Consensus 63 ~~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i 137 (289)
T 3brs_A 63 KRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVI 137 (289)
T ss_dssp HTCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred HhCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEE
Confidence 467888775333 332224455666789999987643221 1245667888888889899998664 6 8999999
Q ss_pred EEcCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 83 YEDIDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 83 ~~~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
...... ......+.+++.+++.|..+.... ....+..+....+.++.+. ++++|+ +.+...+..+++++++.|+.
T Consensus 138 ~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 138 SFVKNSKTAMDREEGLKIGLSDDSNKIEAIY-YCDSNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp ESCTTSHHHHHHHHHHHHHHGGGGGGEEEEE-ECTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT
T ss_pred ECCCCCccHHHHHHHHHHHHHhCCCcEEeee-cCCCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC
Confidence 865331 112226778888988887643322 2222221334445554433 466654 45667788899999999986
Q ss_pred CCCeEEEEeCc
Q 043468 160 EKDYIWITTDA 170 (720)
Q Consensus 160 ~~~~~~i~~~~ 170 (720)
.+...++.+.
T Consensus 216 -~di~vvg~d~ 225 (289)
T 3brs_A 216 -AKVKLVCIDS 225 (289)
T ss_dssp -TTSEEEEEES
T ss_pred -CCEEEEEECC
Confidence 4455555443
No 86
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=96.81 E-value=0.011 Score=58.84 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=58.8
Q ss_pred ecCcchHHHHHhcCcccEEEechhHHHHHHHhcCCCcEee-----------CC-----------eeecCceeeEecCCCC
Q 043468 575 SRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVA-----------GP-----------TYKVGGLGFAFPKGSP 632 (720)
Q Consensus 575 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~-----------~~~~~~~~~~~~k~s~ 632 (720)
..+..+.+..|..|++|+++.+......+++.. +++.+ ++ ......++++.|++-|
T Consensus 171 y~G~~~a~~aL~~G~VD~~~~~~~~~~~~i~~g--~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p 248 (312)
T 2f5x_A 171 YKGTAPAMNDLLGKQVDLMCDQTTNTTQQITSG--KVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTP 248 (312)
T ss_dssp CSSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTT--SSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCC
T ss_pred cCChHHHHHHHHcCCccEEEechHHHHHHHHcC--CeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCC
Confidence 344678899999999999999887776666543 12221 11 0012246889999966
Q ss_pred --ChHHHHHHHhcccccCcHHHHHHHh
Q 043468 633 --LLPSVIEALLKVSESGKLRELETSM 657 (720)
Q Consensus 633 --~~~~in~~i~~~~~~G~~~~~~~~~ 657 (720)
..+.+++++.++.+++.+.+..+++
T Consensus 249 ~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 249 KPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 9999999999999999888777664
No 87
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=96.78 E-value=0.0037 Score=62.16 Aligned_cols=149 Identities=11% Similarity=0.051 Sum_probs=100.0
Q ss_pred cCCeEEEE-CCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCC--CeEEEEE
Q 043468 6 SQKVEAIL-GPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWE--WHQVTVI 82 (720)
Q Consensus 6 ~~~v~aii-Gp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~--~~~v~ii 82 (720)
.+++++|| .|..+.........+...++|+|......+.. ...+.+..+..++...++.+++++...| .++++++
T Consensus 59 ~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i 136 (297)
T 3rot_A 59 ATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVL 136 (297)
T ss_dssp HTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred HcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEE
Confidence 46788775 56666555666777788899999877544321 1123455677888888999999987777 8999999
Q ss_pred EEcCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 83 YEDIDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 83 ~~~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
..+... ......+.+++.+++.|+++.... ...........+.++.+. ++++| ++.....+..+++++++.|+.
T Consensus 137 ~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~ 213 (297)
T 3rot_A 137 NPQPGHIGLEKRAYGIKTILQDKGIFFEELD--VGTDPNQVQSRVKSYFKIHPETNII-FCLTSQALDPLGQMLLHPDRY 213 (297)
T ss_dssp ESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE--CCSCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHSHHHH
T ss_pred eCCCCcHHHHHHHHHHHHHHHhcCCeEEEee--cCCChHHHHHHHHHHHHhCCCCCEE-EEcCCcchHHHHHHHHhcCCc
Confidence 765432 112236889999999999887654 222211334445553322 56764 456677888899999998874
No 88
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=96.75 E-value=0.011 Score=59.30 Aligned_cols=158 Identities=9% Similarity=0.089 Sum_probs=95.3
Q ss_pred ccccCCeEEE-ECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHh---CCCeE
Q 043468 3 LMDSQKVEAI-LGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQS---WEWHQ 78 (720)
Q Consensus 3 Li~~~~v~ai-iGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~---~~~~~ 78 (720)
|+ .++|++| +.|..+.....+...+...++|+|......+. .. ...+-...+.....+.+++++.. .|.++
T Consensus 56 li-~~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~~~~--~~--~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~ 130 (316)
T 1tjy_A 56 FV-NQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKP--EC--RSYYINQGTPKQLGSMLVEMAAHQVDKEKAK 130 (316)
T ss_dssp HH-HTTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCG--GG--CSEEEESCCHHHHHHHHHHHHHHHHCSSSEE
T ss_pred HH-HcCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCCCCC--CC--ceEEEecCCHHHHHHHHHHHHHHHcCCCCCE
Confidence 44 4678875 46666555456667777889999987643221 11 12232367777778888888765 57899
Q ss_pred EEEEEEcCCC-cccCcHHHHHHHHHHc--CcEEEEEEecCCCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHH
Q 043468 79 VTVIYEDIDS-SATGILPHLSDALREA--GAEIIHVLALPHFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKA 153 (720)
Q Consensus 79 v~ii~~~~~~-g~~~~~~~~~~~~~~~--g~~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a 153 (720)
++++...... ......+.+++.+++. +++++.... ...+..+....++++.++ ++++|+ +.....+..+++++
T Consensus 131 i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~aI~-~~nD~~A~g~~~al 208 (316)
T 1tjy_A 131 VAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQF-GYNDATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAA 208 (316)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEE-CTTCHHHHHHHHHHHHHHCSSCCEEE-ECSTTHHHHHHHHH
T ss_pred EEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEEEEecc-CCCCHHHHHHHHHHHHHhCCCCCEEE-ECCCccHHHHHHHH
Confidence 9999754331 1122367788888776 666654332 222221334445554433 466654 44556778889999
Q ss_pred HHcCCCCCCeEEEEeC
Q 043468 154 NKMKMMEKDYIWITTD 169 (720)
Q Consensus 154 ~~~g~~~~~~~~i~~~ 169 (720)
++.| . .+...++.+
T Consensus 209 ~~~G-~-~dv~VvG~D 222 (316)
T 1tjy_A 209 ENLK-R-NNLAIVGFS 222 (316)
T ss_dssp HHTT-C-CSCEEEEBC
T ss_pred HHcC-C-CCEEEEEeC
Confidence 9998 5 444444433
No 89
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=96.74 E-value=0.014 Score=57.54 Aligned_cols=151 Identities=12% Similarity=0.088 Sum_probs=94.5
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++||........ ...+.+. .++|+|......+. +.+..+..++..-++.+++++...|.++++++...
T Consensus 62 ~~~vdgiI~~~~~~~~-~~~~~l~-~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 133 (285)
T 3c3k_A 62 GKMVDGVITMDALSEL-PELQNII-GAFPWVQCAEYDPL------STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHD 133 (285)
T ss_dssp TTCCSEEEECCCGGGH-HHHHHHH-TTSSEEEESSCCTT------SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred hCCCCEEEEeCCCCCh-HHHHHHh-cCCCEEEEccccCC------CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5789888764332222 3334445 89999987643221 22345677888888888999888899999999875
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHH--hhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEK--LKGG--QCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~--i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
... ....-.+.+++.+++.|+++. ...-..... +-...+.+ +.+. ++++|+ +.+...+..+++++++.|+.-
T Consensus 134 ~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~v 210 (285)
T 3c3k_A 134 LAYQYAQHRESGYLNRLKFHGLDYS-RISYAENLD-YMAGKLATFSLLKSAVKPDAIF-AISDVLAAGAIQALTESGLSI 210 (285)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCCCC-EEEECSSSS-HHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred CccccHHHHHHHHHHHHHHcCCCce-EeecCCChH-HHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHHHHHHHHcCCCC
Confidence 431 112225778899999997654 111111111 34455555 5443 577755 456677888999999999863
Q ss_pred C-CeEEEE
Q 043468 161 K-DYIWIT 167 (720)
Q Consensus 161 ~-~~~~i~ 167 (720)
+ +...++
T Consensus 211 P~di~vvg 218 (285)
T 3c3k_A 211 PQDVAVVG 218 (285)
T ss_dssp TTTCEEEC
T ss_pred CCceEEEE
Confidence 3 344443
No 90
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=96.72 E-value=0.0094 Score=59.02 Aligned_cols=157 Identities=10% Similarity=0.068 Sum_probs=97.3
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++||-.............+...++|+|......+. +.+..+..++..-+..+++++...|.++|+++...
T Consensus 74 ~~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~ 147 (293)
T 2iks_A 74 QRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDR------EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGAL 147 (293)
T ss_dssp HTTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESCCCT------TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEEC
T ss_pred HcCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECCccCc------CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 467888875333322233445667789999987653221 22345778888888889999888899999999875
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCCC-C
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMME-K 161 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~~-~ 161 (720)
... ....-.+.+++.+++.|++...... ...+..+-...+.++.+. ++++|+ +.+...+..+++++++.|+.- .
T Consensus 148 ~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~ 225 (293)
T 2iks_A 148 PELSVSFLREQGFRTAWKDDPREVHFLYA-NSYEREAAAQLFEKWLETHPMPQALF-TTSFALLQGVMDVTLRRDGKLPS 225 (293)
T ss_dssp TTSHHHHHHHHHHHHHHTTCCCCEEEEEE-SSSCHHHHHHHHHHHTTTSCCCSEEE-ESSHHHHHHHHHHHHHHHSSCCS
T ss_pred cccccHHHHHHHHHHHHHHcCCCccEEEc-CCCChhhHHHHHHHHHhcCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 331 1122267788899999874322211 111111333455555443 467754 456667888999999999753 3
Q ss_pred CeEEEEeCc
Q 043468 162 DYIWITTDA 170 (720)
Q Consensus 162 ~~~~i~~~~ 170 (720)
+...++.+.
T Consensus 226 di~vvg~d~ 234 (293)
T 2iks_A 226 DLAIATFGD 234 (293)
T ss_dssp SCEEEEESC
T ss_pred ceEEEEECC
Confidence 455555444
No 91
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=96.71 E-value=0.0055 Score=60.62 Aligned_cols=154 Identities=12% Similarity=0.025 Sum_probs=100.4
Q ss_pred cCCeEEEE-CCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHh--CCCeEEEEE
Q 043468 6 SQKVEAIL-GPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQS--WEWHQVTVI 82 (720)
Q Consensus 6 ~~~v~aii-Gp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~--~~~~~v~ii 82 (720)
.+++++|| .|..+.........+...++|+|......+ +.+..+..++...++.+++++.. .|.++++++
T Consensus 59 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i 131 (291)
T 3l49_A 59 AQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVF 131 (291)
T ss_dssp HHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEE
Confidence 46788776 555555566667778888999998765332 13445778888888999999877 899999999
Q ss_pred EEcCCC-cccCcHHHHHHHHHHc-CcEEEEEEecCCCCc--ccHHHHHHHhhcC-----CCeEEEEEcCHHHHHHHHHHH
Q 043468 83 YEDIDS-SATGILPHLSDALREA-GAEIIHVLALPHFPS--SRLSEELEKLKGG-----QCRVFVVHLSLELAVHLFEKA 153 (720)
Q Consensus 83 ~~~~~~-g~~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~--~d~~~~l~~i~~~-----~~~vvil~~~~~~~~~~l~~a 153 (720)
...... ......+.+++.+++. |++++.......+.. ++....+.++.+. ++++| ++.+...+..+++++
T Consensus 132 ~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~a~g~~~al 210 (291)
T 3l49_A 132 NGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAI-WACWDVPMIGATQAL 210 (291)
T ss_dssp CSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEE-EESSHHHHHHHHHHH
T ss_pred eCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEE-EECCCchHHHHHHHH
Confidence 654332 1112267788889888 576544333222221 1223344444332 57775 566778889999999
Q ss_pred HHcCCCCCCeEEEEeC
Q 043468 154 NKMKMMEKDYIWITTD 169 (720)
Q Consensus 154 ~~~g~~~~~~~~i~~~ 169 (720)
++.|+. +...++.+
T Consensus 211 ~~~g~~--di~vvg~d 224 (291)
T 3l49_A 211 QAAGRT--DIRTYGVD 224 (291)
T ss_dssp HHTTCC--SCEEEEEE
T ss_pred HHcCCC--CeEEEEec
Confidence 999986 44444433
No 92
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=96.70 E-value=0.01 Score=58.54 Aligned_cols=155 Identities=12% Similarity=0.045 Sum_probs=98.0
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++||-....... .....+.. ++|+|......+. +.+-.+..++..-++.++++|...|.++++++...
T Consensus 64 ~~~vdgiIi~~~~~~~-~~~~~~~~-~iPvV~i~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 135 (289)
T 3k9c_A 64 RERCEAAILLGTRFDT-DELGALAD-RVPALVVARASGL------PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGA 135 (289)
T ss_dssp TTTEEEEEEETCCCCH-HHHHHHHT-TSCEEEESSCCSS------TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCT
T ss_pred hCCCCEEEEECCCCCH-HHHHHHHc-CCCEEEEcCCCCC------CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 5788888743322222 34444555 9999987653321 23345777888888889999988899999999875
Q ss_pred CCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCC-C
Q 043468 86 IDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMMEK-D 162 (720)
Q Consensus 86 ~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~~~-~ 162 (720)
.......-.+.+++.+++.|+.+.........+..+-...++++.+. ++++| ++++...+..+++++++.|+.-+ +
T Consensus 136 ~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~d 214 (289)
T 3k9c_A 136 DAPGGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMPTPPTAV-VAFNDRCATGVLDLLVRSGRDVPAD 214 (289)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEE-EESSHHHHHHHHHHHHHTTCCTTTT
T ss_pred CCccHHHHHHHHHHHHHHCCCCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEE-EECChHHHHHHHHHHHHcCCCCCCc
Confidence 54322233688999999999763222222222211333445555443 56774 45677788899999999998633 3
Q ss_pred eEEEEeC
Q 043468 163 YIWITTD 169 (720)
Q Consensus 163 ~~~i~~~ 169 (720)
...++-+
T Consensus 215 i~vig~D 221 (289)
T 3k9c_A 215 ISVVGYD 221 (289)
T ss_dssp CEEEEEE
T ss_pred eEEEEEC
Confidence 4444433
No 93
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=96.69 E-value=0.013 Score=58.00 Aligned_cols=158 Identities=8% Similarity=0.111 Sum_probs=98.3
Q ss_pred ccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468 5 DSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE 84 (720)
Q Consensus 5 ~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~ 84 (720)
..++|++||-..... .......+...++|+|......+... ..+..+..++..-++.++++|...|.++++++..
T Consensus 65 ~~~~vdGiI~~~~~~-~~~~~~~l~~~~iPvV~i~~~~~~~~----~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 139 (295)
T 3hcw_A 65 KQRMVDAFILLYSKE-NDPIKQMLIDESMPFIVIGKPTSDID----HQFTHIDNDNILASENLTRHVIEQGVDELIFITE 139 (295)
T ss_dssp HTTCCSEEEESCCCT-TCHHHHHHHHTTCCEEEESCCCSSGG----GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred HhCCcCEEEEcCccc-ChHHHHHHHhCCCCEEEECCCCcccc----CCceEEecCcHHHHHHHHHHHHHcCCccEEEEcC
Confidence 357888876422222 23455666778999998765332210 0233466777888888899988889999999987
Q ss_pred cCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhc-----CCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468 85 DIDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKG-----GQCRVFVVHLSLELAVHLFEKANKMKM 158 (720)
Q Consensus 85 ~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~-----~~~~vvil~~~~~~~~~~l~~a~~~g~ 158 (720)
.... ....-.+.+++.+++.|+.+.. .... .+..+....++++.+ ..+++|+ +.+...+..+++++++.|+
T Consensus 140 ~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~ 216 (295)
T 3hcw_A 140 KGNFEVSKDRIQGFETVASQFNLDYQI-IETS-NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNI 216 (295)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEE-EEEC-SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred CccchhHHHHHHHHHHHHHHcCCCeeE-Eecc-CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCC
Confidence 5442 1122268899999999987652 2111 111122333333322 2577754 5677778999999999998
Q ss_pred CCC-CeEEEEeCc
Q 043468 159 MEK-DYIWITTDA 170 (720)
Q Consensus 159 ~~~-~~~~i~~~~ 170 (720)
.-+ +...++-+.
T Consensus 217 ~vP~di~vig~D~ 229 (295)
T 3hcw_A 217 EIPKDVMTATFND 229 (295)
T ss_dssp CTTTTEEEEEECC
T ss_pred CCCCceEEEEeCC
Confidence 633 444554443
No 94
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.65 E-value=0.0099 Score=58.67 Aligned_cols=158 Identities=8% Similarity=0.050 Sum_probs=99.7
Q ss_pred cccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEE
Q 043468 4 MDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIY 83 (720)
Q Consensus 4 i~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~ 83 (720)
+.+++|++||-.... ........+...++|+|......+. +.+-.+..++..-++.+++++...|.++++++.
T Consensus 62 l~~~~vdgiIi~~~~-~~~~~~~~l~~~~iPvV~i~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 134 (288)
T 3gv0_A 62 LETGSADGVIISKIE-PNDPRVRFMTERNMPFVTHGRSDMG------IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIV 134 (288)
T ss_dssp HHHTCCSEEEEESCC-TTCHHHHHHHHTTCCEEEESCCCSS------CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHcCCccEEEEecCC-CCcHHHHHHhhCCCCEEEECCcCCC------CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEc
Confidence 335778777632222 1224456667789999987653322 223346788888889999999888999999997
Q ss_pred EcCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCc-ccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 84 EDIDS-SATGILPHLSDALREAGAEIIHVLALPHFPS-SRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 84 ~~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
..... ....-.+.+++.+++.|+.+.....+..... .+....+.++.+. ++++|+ +.+...+..+++++++.|+.
T Consensus 135 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~ 213 (288)
T 3gv0_A 135 PPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVK 213 (288)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCC
T ss_pred CCcccchHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCC
Confidence 65432 1122268889999999987644322222211 1333556665544 567754 56777888999999999986
Q ss_pred CC-CeEEEEeC
Q 043468 160 EK-DYIWITTD 169 (720)
Q Consensus 160 ~~-~~~~i~~~ 169 (720)
-+ +...++-+
T Consensus 214 vP~di~vig~d 224 (288)
T 3gv0_A 214 IGEDVDIVSKQ 224 (288)
T ss_dssp TTTSCEEEEEE
T ss_pred CCCceEEEEec
Confidence 33 34444433
No 95
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=96.63 E-value=0.0093 Score=60.12 Aligned_cols=157 Identities=12% Similarity=0.105 Sum_probs=97.0
Q ss_pred cCCeEEEECCCCChh-hHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhC--CCeEEEEE
Q 043468 6 SQKVEAILGPQTSEE-TSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSW--EWHQVTVI 82 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~-~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~--~~~~v~ii 82 (720)
+++|++||....+.. .......+...++|+|......+. .+.+..+.+++...++.+++++... |.++++++
T Consensus 60 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i 134 (325)
T 2x7x_A 60 DEGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILS-----DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVEL 134 (325)
T ss_dssp HTTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred HcCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEE
Confidence 478998876444332 234455566789999987643221 1234556788888888889987664 89999999
Q ss_pred EEcCCC-cccCcHHHHHHHHHHc-CcEEEEEEecCCCCcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468 83 YEDIDS-SATGILPHLSDALREA-GAEIIHVLALPHFPSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANKMKM 158 (720)
Q Consensus 83 ~~~~~~-g~~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~~g~ 158 (720)
...... ....-.+.+++.+++. |+++.... ....+..+-...+.++.+ .++++|+ +.+...+..+++++++.|+
T Consensus 135 ~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi 212 (325)
T 2x7x_A 135 TGLSGSTPAMERHQGFMAAISKFPDIKLIDKA-DAAWERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR 212 (325)
T ss_dssp ESCTTSHHHHHHHHHHHHHHHTCTEEEEEEEE-ECTTSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC
T ss_pred ECCCCCccHHHHHHHHHHHHHhCCCCEEEeee-cCCCCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC
Confidence 865331 1112267888889888 88765432 221111123334444432 3578765 4555678888999999997
Q ss_pred CCCCeEEEEeCc
Q 043468 159 MEKDYIWITTDA 170 (720)
Q Consensus 159 ~~~~~~~i~~~~ 170 (720)
. .+...++.+.
T Consensus 213 p-~dv~vig~D~ 223 (325)
T 2x7x_A 213 E-KEMIFVGIDA 223 (325)
T ss_dssp T-TSSEEEEEEC
T ss_pred C-CCeEEEEECC
Confidence 3 3555555544
No 96
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=96.58 E-value=0.0089 Score=59.04 Aligned_cols=153 Identities=7% Similarity=0.031 Sum_probs=92.2
Q ss_pred cCCeEEEECCC-CChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEE-eecChHHHHHHHHHHHHhC------CCe
Q 043468 6 SQKVEAILGPQ-TSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQ-ASQNQLAQMKAIAAIVQSW------EWH 77 (720)
Q Consensus 6 ~~~v~aiiGp~-~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr-~~p~~~~~~~~~~~~l~~~------~~~ 77 (720)
+++|++||... ...........+...++|+|......+. . ++... +..++...++.+++++... |.+
T Consensus 56 ~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r 130 (290)
T 2fn9_A 56 AAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAK 130 (290)
T ss_dssp HTTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCccc
Confidence 46788887633 3332234455566789999987653321 1 22223 7778888888889988666 788
Q ss_pred E--EEEEEEcCCC-cccCcHHHHHHHHHHc-CcEEEEEEecCCCCcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHH
Q 043468 78 Q--VTVIYEDIDS-SATGILPHLSDALREA-GAEIIHVLALPHFPSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFE 151 (720)
Q Consensus 78 ~--v~ii~~~~~~-g~~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~ 151 (720)
+ ++++...... ......+.+++.+++. |+++.... ....+..+-...++++.+ .++++|+ +.+...+..+++
T Consensus 131 ~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~~d~~a~g~~~ 208 (290)
T 2fn9_A 131 EIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQ-SAEFDRDTAYKVTEQILQAHPEIKAIW-CGNDAMALGAMK 208 (290)
T ss_dssp CEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEE-ECTTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHH
T ss_pred ceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEec-cCCCCHHHHHHHHHHHHHhCCCCcEEE-ECCchHHHHHHH
Confidence 8 6666543221 1112267788889888 88765432 121121123344444433 3578755 456677889999
Q ss_pred HHHHcCCCCCCeEEEE
Q 043468 152 KANKMKMMEKDYIWIT 167 (720)
Q Consensus 152 ~a~~~g~~~~~~~~i~ 167 (720)
++++.|+ .+...++
T Consensus 209 al~~~g~--~dv~vig 222 (290)
T 2fn9_A 209 ACEAAGR--TDIYIFG 222 (290)
T ss_dssp HHHHTTC--TTCEEEC
T ss_pred HHHHCCC--CCeEEEE
Confidence 9999998 3444443
No 97
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=96.58 E-value=0.0036 Score=62.11 Aligned_cols=157 Identities=12% Similarity=0.063 Sum_probs=97.0
Q ss_pred cCCeEEEECCCCChhhHHHHHhhcc-CCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASK-KQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~-~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~ 84 (720)
+++|++||....+... .....+.. .++|+|......+. +.+..+..++...+..+++++...|.++++++..
T Consensus 75 ~~~vdgii~~~~~~~~-~~~~~l~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~ 147 (296)
T 3brq_A 75 DLRCDAIMIYPRFLSV-DEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTG 147 (296)
T ss_dssp HTTCSEEEEECSSSCH-HHHHHHHHTCSSCEEEESCCCSS------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred hcCCCEEEEecCCCCh-HHHHHHHhcCCCCEEEEccccCC------CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcC
Confidence 5788888763332222 33344555 89999987643221 2334567777777888889988889999999986
Q ss_pred cCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCC-CcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 85 DIDS-SATGILPHLSDALREAGAEIIHVLALPHF-PSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 85 ~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
+... ......+.+++.+++.|+++.....+... +..+-...++++.+. ++++|+ +.+...+..+++++++.|+.-
T Consensus 148 ~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~v 226 (296)
T 3brq_A 148 SMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAV 226 (296)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEE-ESSHHHHHHHHHHHHHHTCCT
T ss_pred CCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCC
Confidence 5431 11222677889999998765332122211 111333455555433 678755 456677888999999999863
Q ss_pred -CCeEEEEeCc
Q 043468 161 -KDYIWITTDA 170 (720)
Q Consensus 161 -~~~~~i~~~~ 170 (720)
.+...++.+.
T Consensus 227 P~di~vvg~d~ 237 (296)
T 3brq_A 227 PEQVSVIGFDD 237 (296)
T ss_dssp TTTCEEEEESC
T ss_pred CCceEEEeecC
Confidence 2445555444
No 98
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=96.58 E-value=0.012 Score=58.59 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=58.6
Q ss_pred ecCcchHHHHHhcCcccEEEechhHHHHHHHhcCCCcEee-----------CCe----------e-ecCceeeEecCCCC
Q 043468 575 SRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVA-----------GPT----------Y-KVGGLGFAFPKGSP 632 (720)
Q Consensus 575 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~----------~-~~~~~~~~~~k~s~ 632 (720)
..+..+.+..|..|++|+++.+......+++... ++.+ ++. + ....++++.|++-|
T Consensus 175 y~G~~~a~~al~~G~vD~~~~~~~~~~~~i~~g~--lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p 252 (314)
T 2dvz_A 175 YKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGK--LRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTP 252 (314)
T ss_dssp CSSHHHHHHHHHHTSSSEEEEEHHHHHHHHHTTS--SEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCC
T ss_pred cCCHHHHHHHHHcCCceEEEEcHHHHHHHHHcCC--EEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCC
Confidence 3446788999999999999998877766665431 2221 100 0 12246889999966
Q ss_pred --ChHHHHHHHhcccccCcHHHHHHHh
Q 043468 633 --LLPSVIEALLKVSESGKLRELETSM 657 (720)
Q Consensus 633 --~~~~in~~i~~~~~~G~~~~~~~~~ 657 (720)
..+.+++++.++.+++.+.+..+++
T Consensus 253 ~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 253 MDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 9999999999999999888877665
No 99
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=96.57 E-value=0.023 Score=56.59 Aligned_cols=151 Identities=11% Similarity=0.119 Sum_probs=95.6
Q ss_pred cCCeEEEECCCCCh-hhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHh-----------
Q 043468 6 SQKVEAILGPQTSE-ETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQS----------- 73 (720)
Q Consensus 6 ~~~v~aiiGp~~s~-~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~----------- 73 (720)
++++++||-..... ........+...++|+|......+......++.+..+..++...++.+++++..
T Consensus 57 ~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~ 136 (309)
T 2fvy_A 57 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLN 136 (309)
T ss_dssp HTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTT
T ss_pred HcCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhccccccc
Confidence 57788887533333 234555667778999998765432211112346677888888888889998766
Q ss_pred -CCCeEEEEEEEcCCC-cccCcHHHHHHHHHHcCcEEEEEEecC-CCCcccHHHHHHHhhcC----CCeEEEEEcCHHHH
Q 043468 74 -WEWHQVTVIYEDIDS-SATGILPHLSDALREAGAEIIHVLALP-HFPSSRLSEELEKLKGG----QCRVFVVHLSLELA 146 (720)
Q Consensus 74 -~~~~~v~ii~~~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~~~d~~~~l~~i~~~----~~~vvil~~~~~~~ 146 (720)
.|.++++++...... ....-.+.+++.+++.|+.+.....+. ..+..+-...++++.+. ++++|+ +.+...+
T Consensus 137 g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a 215 (309)
T 2fvy_A 137 KDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI-ANNDAMA 215 (309)
T ss_dssp CSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEE-ESSHHHH
T ss_pred CCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEE-ECCchhH
Confidence 788899999765331 112226788899999997654332222 11211333455555443 567754 4566778
Q ss_pred HHHHHHHHHcC
Q 043468 147 VHLFEKANKMK 157 (720)
Q Consensus 147 ~~~l~~a~~~g 157 (720)
..+++++++.|
T Consensus 216 ~g~~~al~~~g 226 (309)
T 2fvy_A 216 MGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 88999999988
No 100
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=96.53 E-value=0.016 Score=57.41 Aligned_cols=81 Identities=12% Similarity=0.172 Sum_probs=59.2
Q ss_pred ecCcchHHHHHhcCcccEEEechhHHHHHHHhcCCCcEeeC-----------C-----------eeecCceeeEecCCCC
Q 043468 575 SRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAG-----------P-----------TYKVGGLGFAFPKGSP 632 (720)
Q Consensus 575 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~-----------~~~~~~~~~~~~k~s~ 632 (720)
..+..+.+..|..|++|+++.+......+++.. +++.+. + ......++++.|++-|
T Consensus 162 y~g~~~a~~al~~G~vD~~~~~~~~~~~~i~~g--~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p 239 (301)
T 2qpq_A 162 YKGCGPALNDVLGSQIGLAVVTASSAIPFIKAG--KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATP 239 (301)
T ss_dssp CSSHHHHHHHHHTTSSSCEEEEHHHHHHHHHTT--SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCC
T ss_pred cCChHHHHHHHHCCCccEEEEcHHHHHHHHhcC--CeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCC
Confidence 344678899999999999999887776666542 133220 0 0112346889999966
Q ss_pred --ChHHHHHHHhcccccCcHHHHHHHh
Q 043468 633 --LLPSVIEALLKVSESGKLRELETSM 657 (720)
Q Consensus 633 --~~~~in~~i~~~~~~G~~~~~~~~~ 657 (720)
..+.+++++.++.+++.+.+..+++
T Consensus 240 ~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 240 MAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 9999999999999999888877765
No 101
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=96.52 E-value=0.0023 Score=63.29 Aligned_cols=155 Identities=15% Similarity=0.078 Sum_probs=94.6
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++||....+.....+.. + .++|+|......+. +.+..+..++...++.+++++...|.++++++...
T Consensus 61 ~~~vdgiI~~~~~~~~~~~~~-l--~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~ 131 (288)
T 2qu7_A 61 SQNVSAIILVPVKSKFQMKRE-W--LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLAN 131 (288)
T ss_dssp HTTEEEEEECCSSSCCCCCGG-G--GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECC
T ss_pred HcCccEEEEecCCCChHHHHH-h--cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecC
Confidence 578998876443322222222 2 78999987653321 23456778888888899999888899999999865
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEec--CCC-----CcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcC
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLAL--PHF-----PSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMK 157 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~--~~~-----~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g 157 (720)
... ....-.+.+++.+++.|+++.....+ ... +..+-...+.++.+.++++|+ +.+...+..+++++++.|
T Consensus 132 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~a~g~~~al~~~g 210 (288)
T 2qu7_A 132 PNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIV-ATNHLLLLGALQAIKESE 210 (288)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEE-ECSHHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEE-ECCcHHHHHHHHHHHHhC
Confidence 331 11222678889999999765321111 111 111222344444333788865 455667888999999999
Q ss_pred CCC-CCeEEEEeCc
Q 043468 158 MME-KDYIWITTDA 170 (720)
Q Consensus 158 ~~~-~~~~~i~~~~ 170 (720)
+.- .+...++.+.
T Consensus 211 ~~vP~di~vvg~d~ 224 (288)
T 2qu7_A 211 KEIKKDVIIVGFDD 224 (288)
T ss_dssp CCBTTTBEEEEESC
T ss_pred CCCCCceEEEEeCC
Confidence 853 2444444433
No 102
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=96.47 E-value=0.035 Score=55.14 Aligned_cols=158 Identities=12% Similarity=0.001 Sum_probs=100.1
Q ss_pred cCCeEEEE-CCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhC--CCeEEEEE
Q 043468 6 SQKVEAIL-GPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSW--EWHQVTVI 82 (720)
Q Consensus 6 ~~~v~aii-Gp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~--~~~~v~ii 82 (720)
++++++|| .|..+.........+...++|+|......+. .+.+..+.+++...++.+++++... |.++++++
T Consensus 59 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i 133 (305)
T 3g1w_A 59 AKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPD-----SHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVI 133 (305)
T ss_dssp HHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HhCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCC-----CceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46787776 4444444455666677789999987654322 1234457788888899999998777 99999999
Q ss_pred EEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCC-CCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 83 YEDIDSSATGILPHLSDALREAGAEIIHVLALPH-FPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~-~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
............+.+++.+++.|..+........ .+..+-...+.++.+. ++++ |++.+...+..+++++++.|+.
T Consensus 134 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~g~~~al~~~g~~ 212 (305)
T 3g1w_A 134 TLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAG-IFATEANGGVGVGDAVRLESRA 212 (305)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEE-EEESSHHHHHHHHHHHHHTTCT
T ss_pred eCCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceE-EEECCCcchhhHHHHHHhcCCC
Confidence 8654322222367788899888765443322222 2211333344444333 5666 4456777888999999999987
Q ss_pred CCCeEEEEeCc
Q 043468 160 EKDYIWITTDA 170 (720)
Q Consensus 160 ~~~~~~i~~~~ 170 (720)
.+...++.+.
T Consensus 213 -~di~vig~d~ 222 (305)
T 3g1w_A 213 -GEIQIISFDT 222 (305)
T ss_dssp -TTSEEEEESC
T ss_pred -CCeEEEEeCC
Confidence 4555555444
No 103
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=96.46 E-value=0.021 Score=56.12 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=93.9
Q ss_pred cCCeEEEEC-CCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhC-C-CeEEEEE
Q 043468 6 SQKVEAILG-PQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSW-E-WHQVTVI 82 (720)
Q Consensus 6 ~~~v~aiiG-p~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~-~-~~~v~ii 82 (720)
+++|++||- |..+.........+...++|+|......+. .+....+..++..-++.++++|... | .++++++
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i 129 (283)
T 2ioy_A 55 QQKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRSANG-----GDVVCHIASDNVKGGEMAAEFIAKALKGKGNVVEL 129 (283)
T ss_dssp HTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS-----SCCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HcCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCCCCC-----cceeEEEecChHHHHHHHHHHHHHHcCCCceEEEE
Confidence 577888653 444333334455567789999987643211 1223346677777788888987665 5 8999999
Q ss_pred EEcCCCc-ccCcHHHHHHHHHHc-CcEEEEEEecCCCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468 83 YEDIDSS-ATGILPHLSDALREA-GAEIIHVLALPHFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKM 158 (720)
Q Consensus 83 ~~~~~~g-~~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~ 158 (720)
....... ...-.+.+++.+++. |+++..... ...+..+-...++++.+. ++++ |++.+...+..+++++++.|+
T Consensus 130 ~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 130 EGIPGASAARDRGKGFDEAIAKYPDIKIVAKQA-ADFDRSKGLSVMENILQAQPKIDA-VFAQNDEMALGAIKAIEAANR 207 (283)
T ss_dssp ECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEE-CTTCHHHHHHHHHHHHHHCSCCCE-EEESSHHHHHHHHHHHHHTTC
T ss_pred ECCCCCccHHHHHHHHHHHHHhCCCCEEEeecc-CCCCHHHHHHHHHHHHHhCCCccE-EEECCchHHHHHHHHHHHCCC
Confidence 8643321 112256788888888 887654322 111111233344444332 4666 455666788899999999998
Q ss_pred CCCCeEEEEeCc
Q 043468 159 MEKDYIWITTDA 170 (720)
Q Consensus 159 ~~~~~~~i~~~~ 170 (720)
.+...++.+.
T Consensus 208 --~di~viG~D~ 217 (283)
T 2ioy_A 208 --QGIIVVGFDG 217 (283)
T ss_dssp --CCCEEEEEEC
T ss_pred --CCcEEEEeCC
Confidence 3555554443
No 104
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=96.45 E-value=0.011 Score=58.30 Aligned_cols=157 Identities=13% Similarity=0.090 Sum_probs=96.6
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++||-....... .....+...++|+|......+. +.+..+..++..-++.+++++...|.++++++...
T Consensus 62 ~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 134 (287)
T 3bbl_A 62 SGNVDGFVLSSINYND-PRVQFLLKQKFPFVAFGRSNPD------WDFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWP 134 (287)
T ss_dssp TTCCSEEEECSCCTTC-HHHHHHHHTTCCEEEESCCSTT------CCCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred cCCCCEEEEeecCCCc-HHHHHHHhcCCCEEEECCcCCC------CCCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 5788888753322222 3445556689999987643221 12335667888888888999877899999999865
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEecC-CCCcccHHHHHHHhhc-C---CCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLALP-HFPSSRLSEELEKLKG-G---QCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~~~d~~~~l~~i~~-~---~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
... ....-.+.+++.+++.|+++.....+. ..+..+-...++++.+ . ++++|+ +.+...+..+++++++.|+.
T Consensus 135 ~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 213 (287)
T 3bbl_A 135 EDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIM-TLNDTMAIGAMAAARERGLT 213 (287)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred cccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEE-ECCcHHHHHHHHHHHHcCCC
Confidence 332 112226788899999997643211111 1111133345555544 3 567755 45667788899999999986
Q ss_pred C-CCeEEEEeCc
Q 043468 160 E-KDYIWITTDA 170 (720)
Q Consensus 160 ~-~~~~~i~~~~ 170 (720)
- .+...++.+.
T Consensus 214 vP~di~vig~d~ 225 (287)
T 3bbl_A 214 IGTDLAIIGFDD 225 (287)
T ss_dssp BTTTBEEEEESC
T ss_pred CCCCEEEEEECC
Confidence 3 3455555444
No 105
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=96.44 E-value=0.032 Score=54.57 Aligned_cols=142 Identities=9% Similarity=0.033 Sum_probs=90.0
Q ss_pred CeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCC
Q 043468 8 KVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDID 87 (720)
Q Consensus 8 ~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~ 87 (720)
+|++||-....... .....+...++|+|......+. +.+..+..++..-+..+++++...|.++++++..+..
T Consensus 57 ~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~ 129 (277)
T 3cs3_A 57 MVDGAIILDWTFPT-KEIEKFAERGHSIVVLDRTTEH------RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEK 129 (277)
T ss_dssp TCSEEEEECTTSCH-HHHHHHHHTTCEEEESSSCCCS------TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTT
T ss_pred cccEEEEecCCCCH-HHHHHHHhcCCCEEEEecCCCC------CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCcc
Confidence 56666532222122 3334556689999987643221 2355677888888888899988889999999986543
Q ss_pred C-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC---CCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 88 S-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG---QCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 88 ~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~---~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
. ....-.+.+++.+++.|+++. .. ....+..+-...++++.+. ++++|+ +.+...+..+++++++.|+.
T Consensus 130 ~~~~~~R~~gf~~~l~~~g~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 202 (277)
T 3cs3_A 130 GYDSQERLAVSTRELTRFGIPYE-II-QGDFTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQ 202 (277)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCEE-EE-ECCSSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCC
T ss_pred CccHHHHHHHHHHHHHHcCCCee-EE-eCCCChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCC
Confidence 1 112226788899999998765 21 1111211334455555443 567754 56677788899999999985
No 106
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=96.44 E-value=0.017 Score=56.33 Aligned_cols=156 Identities=14% Similarity=0.109 Sum_probs=99.3
Q ss_pred CC-eEEEEC-CCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhC----CCeEEE
Q 043468 7 QK-VEAILG-PQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSW----EWHQVT 80 (720)
Q Consensus 7 ~~-v~aiiG-p~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~----~~~~v~ 80 (720)
++ +++||- |..+.........+...++|+|......+. .+....+.+++...++.+++++... |.++++
T Consensus 57 ~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~ 131 (276)
T 3ksm_A 57 QAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAG-----DAHQGLVATDNYAAGQLAARALLATLDLSKERNIA 131 (276)
T ss_dssp HSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred hCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCCC-----CCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEE
Confidence 44 888764 333445566677788889999987654321 1233456788888899999998776 899999
Q ss_pred EEEEcCCC-cccCcHHHHHHHHHHc-CcEEEEEEecCCCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHc
Q 043468 81 VIYEDIDS-SATGILPHLSDALREA-GAEIIHVLALPHFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKM 156 (720)
Q Consensus 81 ii~~~~~~-g~~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~ 156 (720)
++..+... ......+.+++.+++. |+++.... ....+..+....+.++.+. ++++| ++.+...+..+++++++.
T Consensus 132 ~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~ 209 (276)
T 3ksm_A 132 LLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAP-YAGDDRGAARSEMLRLLKETPTIDGL-FTPNESTTIGALVAIRQS 209 (276)
T ss_dssp ECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEECC-BCCSSHHHHHHHHHHHHHHCSCCCEE-ECCSHHHHHHHHHHHHHT
T ss_pred EEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEEe-cCCCcHHHHHHHHHHHHHhCCCceEE-EECCchhhhHHHHHHHHc
Confidence 99764331 1122267888888888 88765322 1111111333444444333 56664 445667788899999999
Q ss_pred CCCCCCeEEEEeCc
Q 043468 157 KMMEKDYIWITTDA 170 (720)
Q Consensus 157 g~~~~~~~~i~~~~ 170 (720)
|+ ..+...++.+.
T Consensus 210 g~-p~di~vig~d~ 222 (276)
T 3ksm_A 210 GM-SKQFGFIGFDQ 222 (276)
T ss_dssp TC-TTSSEEEEESC
T ss_pred CC-CCCeEEEEeCC
Confidence 98 44555555444
No 107
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=96.43 E-value=0.015 Score=58.94 Aligned_cols=64 Identities=8% Similarity=-0.027 Sum_probs=47.2
Q ss_pred HHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeee----ccceeeeeecccccccceEEEEeccc
Q 043468 388 VEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIV----ARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 388 a~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t----~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.++.|+++++... +++..++..|.+|++|+++++.... .++.....++.++...+..+++++..
T Consensus 59 ~~~~g~~v~~~~~---~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (346)
T 3qsl_A 59 FKDEGLDVSIADF---AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN 126 (346)
T ss_dssp HHHTTCEEEEEEC---SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT
T ss_pred hHhhCCeEEEEec---CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc
Confidence 4667877666532 3589999999999999998765443 45666777777777778888888764
No 108
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=96.42 E-value=0.012 Score=58.11 Aligned_cols=158 Identities=12% Similarity=0.115 Sum_probs=95.5
Q ss_pred cCCeEEEECCCCChhhHHHHHhhcc-CCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASK-KQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~-~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~ 84 (720)
++++++||....... ....+.+.. .++|+|......+. . ++...+.+++...++.+++++...|.++++++..
T Consensus 61 ~~~vdgii~~~~~~~-~~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~ 134 (289)
T 1dbq_A 61 QKRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPG 134 (289)
T ss_dssp HTTCSEEEEECSCCC-HHHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred hCCCCEEEEEeccCC-HHHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEec
Confidence 577888875222211 233444444 79999987653221 1 2344677888888899999988889999999976
Q ss_pred cCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCC-CcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 85 DID-SSATGILPHLSDALREAGAEIIHVLALPHF-PSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 85 ~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
+.. .......+.+++.+++.|+++.....+... +..+-...++++.+ .++++|+ +.+...+..+++++++.|+.-
T Consensus 135 ~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~v 213 (289)
T 1dbq_A 135 PLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVF-CGGDIMAMGALCAADEMGLRV 213 (289)
T ss_dssp C------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEE-ESCHHHHHHHHHHHHHTTCCT
T ss_pred CCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCC
Confidence 532 111223788999999999764322112211 11133345555544 3677755 456677888999999999863
Q ss_pred -CCeEEEEeCc
Q 043468 161 -KDYIWITTDA 170 (720)
Q Consensus 161 -~~~~~i~~~~ 170 (720)
.+...++.+.
T Consensus 214 P~di~vvg~d~ 224 (289)
T 1dbq_A 214 PQDVSLIGYDN 224 (289)
T ss_dssp TTTCEEEEEEC
T ss_pred CCceEEEeeCC
Confidence 2444444433
No 109
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=96.40 E-value=0.037 Score=56.27 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=101.5
Q ss_pred cccc-CCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCccccc-------CCC-CeEEEeecChHHHHHHHHHHHHh
Q 043468 3 LMDS-QKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-------ERW-PFLLQASQNQLAQMKAIAAIVQS 73 (720)
Q Consensus 3 Li~~-~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~-------~~~-~~~fr~~p~~~~~~~~~~~~l~~ 73 (720)
++.+ +++++||-.........+...+...++|+|......+.... ..| .++..+.+++...++.+++++..
T Consensus 56 ~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 135 (350)
T 3h75_A 56 LFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLH 135 (350)
T ss_dssp HHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHH
Confidence 4433 68888765333344566677788899999988765433210 111 13677788888888889999866
Q ss_pred CC------C-eEEEEEEEcCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC--CCeEEEEEcCH
Q 043468 74 WE------W-HQVTVIYEDIDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG--QCRVFVVHLSL 143 (720)
Q Consensus 74 ~~------~-~~v~ii~~~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~vvil~~~~ 143 (720)
.+ . ++++++...... ......+.+++.+++.|............+.+.-...++++.+. ++++ |++++.
T Consensus 136 ~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a-I~~~~d 214 (350)
T 3h75_A 136 KLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQLVYGEWNRERAYRQAQQLLKRYPKTQL-VWSAND 214 (350)
T ss_dssp HHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEE-EEESSH
T ss_pred HhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCE-EEECCh
Confidence 55 4 899999754331 11223678999999998622222222222222333344444333 4555 445677
Q ss_pred HHHHHHHHHHHHcCCCCC-CeEEEEeCc
Q 043468 144 ELAVHLFEKANKMKMMEK-DYIWITTDA 170 (720)
Q Consensus 144 ~~~~~~l~~a~~~g~~~~-~~~~i~~~~ 170 (720)
..+..+++++++.|+.-+ +...++.+.
T Consensus 215 ~~a~g~~~al~~~G~~vP~di~vvg~d~ 242 (350)
T 3h75_A 215 EMALGAMQAARELGRKPGTDLLFSGVNS 242 (350)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEESC
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEecCC
Confidence 888899999999998632 455555444
No 110
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=96.36 E-value=0.017 Score=56.38 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=95.4
Q ss_pred cCCeEEEEC-CCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468 6 SQKVEAILG-PQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiG-p~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~ 84 (720)
.++|+++|- |.... ......+...++|+|......+. +.+..+..++...++.+++++...|.++++++..
T Consensus 57 ~~~vdgii~~~~~~~--~~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~ 128 (275)
T 3d8u_A 57 ESRPAGVVLFGSEHS--QRTHQLLEASNTPVLEIAELSSK------ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGA 128 (275)
T ss_dssp TSCCCCEEEESSCCC--HHHHHHHHHHTCCEEEESSSCSS------SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred hcCCCEEEEeCCCCC--HHHHHHHHhCCCCEEEEeeccCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcC
Confidence 467777653 22222 23444556679999987543221 2345677888888888999988889999999986
Q ss_pred cCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCC-CcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 85 DIDS-SATGILPHLSDALREAGAEIIHVLALPHF-PSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 85 ~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
.... ....-.+.+++.+++.|+.+.....+... +..+-...++++.+. ++++|+ +.+...+..+++++++.|+.-
T Consensus 129 ~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~v 207 (275)
T 3d8u_A 129 RGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKV 207 (275)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred CCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCC
Confidence 5331 11222678889999999764333222221 111333445555443 577755 456677889999999999853
Q ss_pred C-CeEEEEeC
Q 043468 161 K-DYIWITTD 169 (720)
Q Consensus 161 ~-~~~~i~~~ 169 (720)
+ +...++.+
T Consensus 208 P~di~vvg~d 217 (275)
T 3d8u_A 208 PTDIAIICLE 217 (275)
T ss_dssp TTTCEEEESS
T ss_pred CCceEEEecC
Confidence 2 34444433
No 111
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=96.32 E-value=0.011 Score=58.51 Aligned_cols=157 Identities=9% Similarity=0.077 Sum_probs=99.1
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
++++++||-..... .......+...++|+|......+. +.+..+..++...++.+++++...|.++++++...
T Consensus 62 ~~~vdgiIi~~~~~-~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 134 (291)
T 3egc_A 62 ERRVDGLILAPSEG-EHDYLRTELPKTFPIVAVNRELRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGS 134 (291)
T ss_dssp HTTCSEEEECCCSS-CCHHHHHSSCTTSCEEEESSCCCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred HCCCCEEEEeCCCC-ChHHHHHhhccCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 57788887533332 455667778889999987654331 23455778888888999999988899999999765
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEecC-CCCcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHHcCCCC-
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLALP-HFPSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANKMKMME- 160 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~~g~~~- 160 (720)
... ......+.+++.+++.|+.+....... ..+..+....+.++.+ .++++|+ +.+...+..+++++++.|+.-
T Consensus 135 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP 213 (291)
T 3egc_A 135 AGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYG 213 (291)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBT
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCC
Confidence 431 112236788899999987642211111 1111123334444443 3677755 567778889999999999863
Q ss_pred CCeEEEEeCc
Q 043468 161 KDYIWITTDA 170 (720)
Q Consensus 161 ~~~~~i~~~~ 170 (720)
.+...++-+.
T Consensus 214 ~di~vvg~d~ 223 (291)
T 3egc_A 214 PDVEIVSFDN 223 (291)
T ss_dssp TTBEEEEESC
T ss_pred CceEEEEecC
Confidence 2444454443
No 112
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=96.32 E-value=0.0036 Score=62.40 Aligned_cols=150 Identities=6% Similarity=-0.004 Sum_probs=94.8
Q ss_pred cCCeEEEE-CCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCC-----CeEE
Q 043468 6 SQKVEAIL-GPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWE-----WHQV 79 (720)
Q Consensus 6 ~~~v~aii-Gp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~-----~~~v 79 (720)
++++++|| .|..+.........+. .++|+|......+.......+....+.+++..-++.+++++...+ .+++
T Consensus 61 ~~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i 139 (304)
T 3o1i_D 61 QWGANAIILGTVDPHAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNI 139 (304)
T ss_dssp HHTCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEE
T ss_pred HcCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEE
Confidence 45777775 5554443334455566 899999875443211111235677788888888899999998888 8999
Q ss_pred EEEEEcCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHh-hcCCCeEEEEEcCHHHHHHHHHHHHHcC
Q 043468 80 TVIYEDIDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKL-KGGQCRVFVVHLSLELAVHLFEKANKMK 157 (720)
Q Consensus 80 ~ii~~~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i-~~~~~~vvil~~~~~~~~~~l~~a~~~g 157 (720)
+++...... ....-.+.+++.+++.|+++.... ....+...-...+.++ +..++++ | ++....+..+++++++.|
T Consensus 140 ~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g 216 (304)
T 3o1i_D 140 ALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSF-WADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSAD 216 (304)
T ss_dssp EEECCCC-----CHHHHHHHHTTTTBTEEEEECC-CCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTT
T ss_pred EEEECCCCcchHHHHHHHHHHHHhcCCCEEEEee-cCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcC
Confidence 999764331 112226888889989998876543 2211211222333333 2336788 4 456788889999999999
Q ss_pred CC
Q 043468 158 MM 159 (720)
Q Consensus 158 ~~ 159 (720)
+.
T Consensus 217 ~~ 218 (304)
T 3o1i_D 217 KT 218 (304)
T ss_dssp CG
T ss_pred CC
Confidence 85
No 113
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=96.31 E-value=0.049 Score=54.35 Aligned_cols=148 Identities=10% Similarity=0.006 Sum_probs=94.1
Q ss_pred cCCeEEEEC-CCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHH-hCCCeEEEEEE
Q 043468 6 SQKVEAILG-PQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQ-SWEWHQVTVIY 83 (720)
Q Consensus 6 ~~~v~aiiG-p~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~-~~~~~~v~ii~ 83 (720)
++++++||- |............+...++|+|......+. . +....+..++...++.++++|. ..|.++++++.
T Consensus 56 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~ 130 (313)
T 3m9w_A 56 NRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND---A--DIDFYISFDNEKVGELQAKALVDIVPQGNYFLMG 130 (313)
T ss_dssp HTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT---S--CCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred HcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC---C--CceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 467777754 444444456667778889999987654322 1 1214567788888899999986 89999999997
Q ss_pred EcCCC-cccCcHHHHHHHHHHc----CcEEEEEEecCCCCcccHHHHHHHhh-c--CCCeEEEEEcCHHHHHHHHHHHHH
Q 043468 84 EDIDS-SATGILPHLSDALREA----GAEIIHVLALPHFPSSRLSEELEKLK-G--GQCRVFVVHLSLELAVHLFEKANK 155 (720)
Q Consensus 84 ~~~~~-g~~~~~~~~~~~~~~~----g~~v~~~~~~~~~~~~d~~~~l~~i~-~--~~~~vvil~~~~~~~~~~l~~a~~ 155 (720)
..... ....-.+.+++.+++. ++++.........+..+-...+.++. + .++++| ++.+...+..+++++++
T Consensus 131 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai-~~~~d~~a~g~~~al~~ 209 (313)
T 3m9w_A 131 GSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAV-VASNDATAGGAIQALSA 209 (313)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEECGGGCHHHHHHHHHHHHHHTTTCCCEE-EESSHHHHHHHHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHHHhhccCCCEEEEeeccCCCcCHHHHHHHHHHHHHhCCCCeeEE-EECCCchHHHHHHHHHH
Confidence 54332 1112257788888887 67765544321111112233344433 2 356764 45567788899999999
Q ss_pred cCCC
Q 043468 156 MKMM 159 (720)
Q Consensus 156 ~g~~ 159 (720)
.|+.
T Consensus 210 ~G~~ 213 (313)
T 3m9w_A 210 QGLS 213 (313)
T ss_dssp TTCT
T ss_pred cCCC
Confidence 9986
No 114
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=96.28 E-value=0.0057 Score=60.11 Aligned_cols=153 Identities=10% Similarity=0.028 Sum_probs=93.6
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
++++++|| .........+.. .++|+|......+ .. +.+..+..++...++.+++++...|.++++++...
T Consensus 58 ~~~vdgiI-~~~~~~~~~~~~----~~iPvV~~~~~~~--~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 127 (280)
T 3gyb_A 58 SMRPDGII-IAQDIPDFTVPD----SLPPFVIAGTRIT--QA---STHDSVANDDFRGAEIATKHLIDLGHTHIAHLRVG 127 (280)
T ss_dssp TTCCSEEE-EESCC------------CCCEEEESCCCS--SS---CSTTEEEECHHHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred hCCCCEEE-ecCCCChhhHhh----cCCCEEEECCCCC--CC---CCCCEEEechHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 57899988 222222222222 8999998765431 11 22334677888888999999988899999999875
Q ss_pred CCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHHcCCCC-CC
Q 043468 86 IDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANKMKMME-KD 162 (720)
Q Consensus 86 ~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~~g~~~-~~ 162 (720)
... .....+.+++.+++.|..+.........+..+-...+.++.+ .++++| ++.....+..+++++++.|+.- .+
T Consensus 128 ~~~-~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~vP~d 205 (280)
T 3gyb_A 128 SGA-GLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAI-FSSNDITAIGALGAARELGLRVPED 205 (280)
T ss_dssp SHH-HHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHHHTCCTTTT
T ss_pred Cch-HHHHHHHHHHHHHHcCcCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEE-EECChHHHHHHHHHHHHcCCCCCCe
Confidence 543 233378899999999987654332111111123334444432 357775 4567778889999999999863 24
Q ss_pred eEEEEeCc
Q 043468 163 YIWITTDA 170 (720)
Q Consensus 163 ~~~i~~~~ 170 (720)
...++.+.
T Consensus 206 i~vvg~d~ 213 (280)
T 3gyb_A 206 LSIIGYDN 213 (280)
T ss_dssp CEEEEESC
T ss_pred eEEEEECC
Confidence 44454443
No 115
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=96.25 E-value=0.031 Score=55.33 Aligned_cols=152 Identities=9% Similarity=0.123 Sum_probs=92.4
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccc------cCCCCeEEEeecChHHHHHHHHHHHHhC--CCe
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWA------TERWPFLLQASQNQLAQMKAIAAIVQSW--EWH 77 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~------~~~~~~~fr~~p~~~~~~~~~~~~l~~~--~~~ 77 (720)
+++|++||... +.....+.. ...++|+|..+...+... .....++..+. +..-+...++++... |.+
T Consensus 60 ~~~vDgII~~~-~~~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~ 134 (295)
T 3lft_A 60 ANGNDLVVGIA-TPAAQGLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVK 134 (295)
T ss_dssp TSSCSEEEEES-HHHHHHHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCC
T ss_pred hcCCCEEEECC-cHHHHHHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCc
Confidence 67899988643 222222222 247999998765433211 01112343333 222356677887776 899
Q ss_pred EEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcC
Q 043468 78 QVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMK 157 (720)
Q Consensus 78 ~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g 157 (720)
++++|+...........+.+++.+++.|+++....... .. +....++++. .++|+|+...+. .+...++++.+.+
T Consensus 135 ~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~~--~~-~~~~~~~~l~-~~~dai~~~~D~-~a~g~~~~l~~~~ 209 (295)
T 3lft_A 135 TIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPS--TN-EIASTVTVMT-SKVDAIWVPIDN-TIASGFPTVVSSN 209 (295)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEESS--GG-GHHHHHHHHT-TTCSEEEECSCH-HHHHTHHHHHHHT
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecCC--HH-HHHHHHHHHH-hcCCEEEECCch-hHHHHHHHHHHHH
Confidence 99999987653222236889999999999876654322 22 7777888876 478998776553 4555677777777
Q ss_pred CCCCCeEEEEe
Q 043468 158 MMEKDYIWITT 168 (720)
Q Consensus 158 ~~~~~~~~i~~ 168 (720)
.. .+...++.
T Consensus 210 ~~-~~i~vig~ 219 (295)
T 3lft_A 210 QS-SKKPIYPS 219 (295)
T ss_dssp TT-TCCCEEES
T ss_pred HH-cCCCEEeC
Confidence 53 24444443
No 116
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=96.24 E-value=0.0095 Score=60.41 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=100.3
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++||-.........+...+...++|+|......+. +.+..+..++..-+..+++++...|.++++++...
T Consensus 117 ~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 190 (338)
T 3dbi_A 117 DLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGS 190 (338)
T ss_dssp HTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred hCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 568888875433333455777888889999987654322 12233677888888888999988899999999764
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEecCCC-CcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHHcCCCC-
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLALPHF-PSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANKMKMME- 160 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~~g~~~- 160 (720)
... ....-.+.+++.+++.|+.+......... +..+-...+.++.+ .++++|+ +.+...+..+++++++.|+.-
T Consensus 191 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP 269 (338)
T 3dbi_A 191 MDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVP 269 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTT
T ss_pred CCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCC
Confidence 331 11222678999999999764322112211 11122334444432 3677754 566777889999999999863
Q ss_pred CCeEEEEeCc
Q 043468 161 KDYIWITTDA 170 (720)
Q Consensus 161 ~~~~~i~~~~ 170 (720)
.+...++-+.
T Consensus 270 ~di~vvg~D~ 279 (338)
T 3dbi_A 270 EQVSVIGFDD 279 (338)
T ss_dssp TTCEEEEESC
T ss_pred CCeEEEEECC
Confidence 3455555443
No 117
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=96.23 E-value=0.0099 Score=58.72 Aligned_cols=154 Identities=12% Similarity=0.044 Sum_probs=91.6
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++||....... ......+...++|+|......+. + +..+..++...++.+++++...|.++++++...
T Consensus 63 ~~~vdgiI~~~~~~~-~~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 134 (290)
T 3clk_A 63 ERPVMGILLLSIALT-DDNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGID 134 (290)
T ss_dssp SSCCSEEEEESCC-----CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCC
T ss_pred hcCCCEEEEecccCC-HHHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 567888775322222 23344556789999987643221 2 445778888888889999888899999999765
Q ss_pred CC-CcccCcHHHHHHHHHHcCcEEEEEEecCCC-CcccHHHHHHHhh-cCCCeEEEEEcCHHHHHHHHHHHHHcCCCCC-
Q 043468 86 ID-SSATGILPHLSDALREAGAEIIHVLALPHF-PSSRLSEELEKLK-GGQCRVFVVHLSLELAVHLFEKANKMKMMEK- 161 (720)
Q Consensus 86 ~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~i~-~~~~~vvil~~~~~~~~~~l~~a~~~g~~~~- 161 (720)
.. .....-.+.+++.+++.|+++.....+... +..+-...++++. ..++++|+ +.+...+..+++++++.|+.-+
T Consensus 135 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 135 QYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGII-AASDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp CCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCC
Confidence 32 211222678899999999764321111111 1112334455554 34677755 4566678889999999998532
Q ss_pred CeEEEEe
Q 043468 162 DYIWITT 168 (720)
Q Consensus 162 ~~~~i~~ 168 (720)
+...++.
T Consensus 214 di~vvg~ 220 (290)
T 3clk_A 214 DLSIVSI 220 (290)
T ss_dssp TCEEEEE
T ss_pred ceEEEEe
Confidence 3444443
No 118
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=96.21 E-value=0.014 Score=57.61 Aligned_cols=158 Identities=13% Similarity=0.148 Sum_probs=99.8
Q ss_pred ccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468 5 DSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE 84 (720)
Q Consensus 5 ~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~ 84 (720)
..+++++||-..... .......+...++|+|......+.. +.+..+..++..-+..++++|...|.++++++..
T Consensus 66 ~~~~vdgiIi~~~~~-~~~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~ 139 (292)
T 3k4h_A 66 QGRQIGGIILLYSRE-NDRIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGG 139 (292)
T ss_dssp HTTCCCEEEESCCBT-TCHHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred HcCCCCEEEEeCCCC-ChHHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeC
Confidence 357888876432222 2355667777899999876543221 1244577888888899999998889999999986
Q ss_pred cCCC-cccCcHHHHHHHHHHcCcEEEEEEec-CCCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 85 DIDS-SATGILPHLSDALREAGAEIIHVLAL-PHFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 85 ~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~-~~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
.... ....-.+.+++.+++.|+.+...... ...+..+....+.++.+. ++++|+ +.+...+..+++++++.|+.-
T Consensus 140 ~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~v 218 (292)
T 3k4h_A 140 GSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVV 218 (292)
T ss_dssp CTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred cccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCC
Confidence 5432 11122678899999999764322111 111111334455555444 567754 567778889999999999863
Q ss_pred C-CeEEEEeC
Q 043468 161 K-DYIWITTD 169 (720)
Q Consensus 161 ~-~~~~i~~~ 169 (720)
+ +...++.+
T Consensus 219 P~di~vig~d 228 (292)
T 3k4h_A 219 PKDVSIVSFN 228 (292)
T ss_dssp TTTCEEEEES
T ss_pred CCeEEEEEec
Confidence 2 44444444
No 119
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=96.20 E-value=0.013 Score=57.96 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=99.0
Q ss_pred cccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEE
Q 043468 4 MDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIY 83 (720)
Q Consensus 4 i~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~ 83 (720)
+.+++|++||-....... .....+...++|+|......+ . +.+-.+..++..-+..++++|...|.++++++.
T Consensus 61 l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 133 (294)
T 3qk7_A 61 VETRRVDALIVAHTQPED-FRLQYLQKQNFPFLALGRSHL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVS 133 (294)
T ss_dssp HHHTCCSEEEECSCCSSC-HHHHHHHHTTCCEEEESCCCC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHcCCCCEEEEeCCCCCh-HHHHHHHhCCCCEEEECCCCC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEe
Confidence 335678887643222222 445667778999998765322 1 233457788888888899999889999999998
Q ss_pred EcCCC-cccCcHHHHHHHHHHcCcEEEEEEecC-CCCcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 84 EDIDS-SATGILPHLSDALREAGAEIIHVLALP-HFPSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 84 ~~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
..... ....-.+.+++.+++.|+.+....... ..+..+-...+.++.+ .++++| ++++...+..+++++++.|+.
T Consensus 134 ~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 134 TDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAI-ITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp ESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEE-EESSHHHHHHHHHHHHHTTCS
T ss_pred CCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEE-EECCHHHHHHHHHHHHHcCCC
Confidence 76542 111226788899999987642111111 1111123334444433 367774 456778888999999999986
Q ss_pred CC-CeEEEEeCc
Q 043468 160 EK-DYIWITTDA 170 (720)
Q Consensus 160 ~~-~~~~i~~~~ 170 (720)
-+ +...++-+.
T Consensus 213 vP~di~vig~D~ 224 (294)
T 3qk7_A 213 GGEGISLIAYDG 224 (294)
T ss_dssp STTSCEEEEETC
T ss_pred CCCceEEEeecC
Confidence 43 444554443
No 120
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.14 E-value=0.0074 Score=48.79 Aligned_cols=73 Identities=18% Similarity=0.071 Sum_probs=54.9
Q ss_pred HHHHhhheeeeecccCCCccCccccccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 043468 478 SIYNGFVVWLIERNHWPELTGSALHQTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLT 551 (720)
Q Consensus 478 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~ 551 (720)
+++.+.+.+.+++..+ ++....+.+++|+++ .+.|+. |.+..+|++.++|+++++.+.+...+.+.+.+.
T Consensus 19 ~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~ 94 (103)
T 2k1e_A 19 LEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFV 94 (103)
T ss_dssp HHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGG
T ss_pred HHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666677776543 222345778888888 455665 789999999999999999999999999998886
Q ss_pred ccc
Q 043468 552 ARG 554 (720)
Q Consensus 552 ~~~ 554 (720)
...
T Consensus 95 ~~~ 97 (103)
T 2k1e_A 95 RRE 97 (103)
T ss_dssp GHH
T ss_pred HHH
Confidence 543
No 121
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=96.13 E-value=0.023 Score=56.40 Aligned_cols=156 Identities=10% Similarity=-0.038 Sum_probs=93.9
Q ss_pred cCCeEEEE-CCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHh-CCCe-EEEEE
Q 043468 6 SQKVEAIL-GPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQS-WEWH-QVTVI 82 (720)
Q Consensus 6 ~~~v~aii-Gp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~-~~~~-~v~ii 82 (720)
.+++++|| .|..+.........+...++|+|...... .. .+.+..+..++...++.+++++.. .|.+ +++++
T Consensus 59 ~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~~--~~---~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i 133 (303)
T 3d02_A 59 ARKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESPG--QP---SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIY 133 (303)
T ss_dssp HTTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCTT--CT---TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCC--CC---CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEE
Confidence 46788865 45544433445566777899999876531 11 134556778888888888999766 8887 99988
Q ss_pred EEcCCC-cccCcHHHHHHHHHHcC--cEEEEEEecCCC-CcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHc
Q 043468 83 YEDIDS-SATGILPHLSDALREAG--AEIIHVLALPHF-PSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKM 156 (720)
Q Consensus 83 ~~~~~~-g~~~~~~~~~~~~~~~g--~~v~~~~~~~~~-~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~ 156 (720)
...... ......+.+++.+++.+ +++... .+... +..+....+.++.+. ++++|+. .....+..+++++++.
T Consensus 134 ~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~ 211 (303)
T 3d02_A 134 VGSLTVPQHNLWADLLVKYQKEHYPDMHEVTR-RMPVAESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEK 211 (303)
T ss_dssp CSCSSCHHHHHHHHHHHHHHHHHCTTEEESSS-CBSCTTCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHT
T ss_pred ecCCCCccHHHHHHHHHHHHHhhCCCCEEEEe-ecCCCCCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhc
Confidence 654321 11222577888888765 443221 11211 111344455555443 4566443 4556778899999999
Q ss_pred CCCCCCeEEEEeC
Q 043468 157 KMMEKDYIWITTD 169 (720)
Q Consensus 157 g~~~~~~~~i~~~ 169 (720)
|+. .+...++.+
T Consensus 212 g~~-~dv~vig~d 223 (303)
T 3d02_A 212 RAK-NKVAVYGMM 223 (303)
T ss_dssp TCT-TTCEEEECC
T ss_pred CCC-CCeEEEEeC
Confidence 986 344444433
No 122
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=96.13 E-value=0.018 Score=58.39 Aligned_cols=157 Identities=8% Similarity=0.025 Sum_probs=93.2
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccC-CcccccCCCCeEEEeecChHHHHHHHHHHHHh-CC-CeEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADA-TPNWATERWPFLLQASQNQLAQMKAIAAIVQS-WE-WHQVTVI 82 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~-~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~-~~-~~~v~ii 82 (720)
++++++||-+..+.........+...++|+|..... .+.......+....+..++..-++.+++++.. .| .++++++
T Consensus 102 ~~~vdgiIi~~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i 181 (342)
T 1jx6_A 102 KSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVL 181 (342)
T ss_dssp HTTCSEEEECCSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hcCCCEEEEeCChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEE
Confidence 467888877554433334445556679998876322 22111011234455778888888889999866 47 9999999
Q ss_pred EEcCCCcccCcHHHHHHHHHHcCc-EEEEEEecCCC-CcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468 83 YEDIDSSATGILPHLSDALREAGA-EIIHVLALPHF-PSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANKMKM 158 (720)
Q Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~g~-~v~~~~~~~~~-~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~~g~ 158 (720)
..........-.+.+++.+++.|. +.... +... +..+-...++++.+ .++++|+ +.+...+..+++++++.|+
T Consensus 182 ~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 182 YFSEGYISDVRGDTFIHQVNRDNNFELQSA--YYTKATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHCCEEEEE--ECCCSSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred EcCCcchhhHHHHHHHHHHHhCCCcEEEEE--ecCCCCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 765432112226788889998886 33222 2221 11122334444432 3577755 5566778889999999998
Q ss_pred CCCCeEEEE
Q 043468 159 MEKDYIWIT 167 (720)
Q Consensus 159 ~~~~~~~i~ 167 (720)
.+...++
T Consensus 259 --~di~vvg 265 (342)
T 1jx6_A 259 --EDIMING 265 (342)
T ss_dssp --TTSEEBC
T ss_pred --CCcEEEE
Confidence 3444443
No 123
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=96.10 E-value=0.016 Score=57.14 Aligned_cols=157 Identities=11% Similarity=0.088 Sum_probs=97.5
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++||-...... ......+...++|+|......+. +.+..+..++..-++.++++|...|.++++++...
T Consensus 70 ~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 142 (289)
T 2fep_A 70 GKQVDGIVFMGGNIT-DEHVAEFKRSPVPIVLAASVEEQ------EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGP 142 (289)
T ss_dssp HTTCSEEEECCSCCC-HHHHHHHHHSSSCEEEESCCCTT------CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESC
T ss_pred hCCCCEEEEecCCCC-HHHHHHHHhcCCCEEEEccccCC------CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 578888875322222 33344455789999987643221 22335778888888889999888899999999865
Q ss_pred C-C-CcccCcHHHHHHHHHHcCcEEEEEEecC-CCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 86 I-D-SSATGILPHLSDALREAGAEIIHVLALP-HFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 86 ~-~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
. . .....-.+.+++.+++.|+++.....+. ..+..+-...++++.+. ++++|+ +.+...+..+++++++.|+.-
T Consensus 143 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~v 221 (289)
T 2fep_A 143 MAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGIIHAAQDQGLSI 221 (289)
T ss_dssp TTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred ccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCC
Confidence 4 2 2122337889999999997643211111 11111333455555443 577755 456677889999999999853
Q ss_pred -CCeEEEEeCc
Q 043468 161 -KDYIWITTDA 170 (720)
Q Consensus 161 -~~~~~i~~~~ 170 (720)
.+...++.+.
T Consensus 222 P~di~vvg~D~ 232 (289)
T 2fep_A 222 PEDLDIIGFDN 232 (289)
T ss_dssp TTTCEEEEEEC
T ss_pred CCCeEEEEECC
Confidence 3444554443
No 124
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=96.07 E-value=0.012 Score=59.46 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=96.7
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++||-....... .....+...++|+|......+. +.+..+..++..-+..+++++...|.++++++...
T Consensus 114 ~~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 186 (332)
T 2hsg_A 114 GKQVDGIIFMSGNVTE-EHVEELKKSPVPVVLAASIEST------NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGT 186 (332)
T ss_dssp CCSSCCEEECCSSCCH-HHHHHHTTSSSCEEEESCCCSC------TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESC
T ss_pred hCCCcEEEEecCCCCH-HHHHHHHhCCCCEEEEccccCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 5778887753322222 3445566789999987643221 22334667777788888999888899999999875
Q ss_pred C-C-CcccCcHHHHHHHHHHcCcEEEEEEecC-CCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 86 I-D-SSATGILPHLSDALREAGAEIIHVLALP-HFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 86 ~-~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~-~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
. . .....-.+.+++.+++.|+++.....+. ..+..+-...+.++.+. ++++|+ +.+...+..+++++++.|+.-
T Consensus 187 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~v 265 (332)
T 2hsg_A 187 LEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNV 265 (332)
T ss_dssp TTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCH
T ss_pred cccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCC
Confidence 4 2 2112337889999999997643211111 11111223445554433 578765 566777889999999999852
Q ss_pred -CCeEEEEeCc
Q 043468 161 -KDYIWITTDA 170 (720)
Q Consensus 161 -~~~~~i~~~~ 170 (720)
.+...++-+.
T Consensus 266 P~disvvg~D~ 276 (332)
T 2hsg_A 266 PNDLEIIGFDN 276 (332)
T ss_dssp HHHCEEEEESC
T ss_pred CCCeEEEEECC
Confidence 2334444443
No 125
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=96.07 E-value=0.031 Score=55.06 Aligned_cols=156 Identities=9% Similarity=0.054 Sum_probs=99.0
Q ss_pred cccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEE
Q 043468 4 MDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIY 83 (720)
Q Consensus 4 i~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~ 83 (720)
+.+++|++||-.........+.. ....++|+|......+ .+-.+..++..-++.+++++...|.++++++.
T Consensus 64 l~~~~vdgiIi~~~~~~~~~~~~-~~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~ 134 (289)
T 3g85_A 64 SKENSFDAAIIANISNYDLEYLN-KASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAIL 134 (289)
T ss_dssp STTTCCSEEEESSCCHHHHHHHH-HCCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEE
T ss_pred HhccCCCEEEEecCCcccHHHHH-hccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 34678888875444333333333 3467999998765322 23457788888889999999888999999998
Q ss_pred EcCCC-cccCcHHHHHHHHHHcCcEEEEEEec-CCCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 84 EDIDS-SATGILPHLSDALREAGAEIIHVLAL-PHFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 84 ~~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~-~~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
.+... ....-.+.+++.+++.|+.+.....+ ...+..+....+.++.+. ++++|+ +.+...+..+++++++.|+.
T Consensus 135 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 135 TESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred CCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCC
Confidence 75432 11222688899999999764321111 111111334455555444 567754 56778888999999999986
Q ss_pred CC-CeEEEEeC
Q 043468 160 EK-DYIWITTD 169 (720)
Q Consensus 160 ~~-~~~~i~~~ 169 (720)
-+ +...++-+
T Consensus 214 vP~di~vig~d 224 (289)
T 3g85_A 214 IPDDIEIVAIG 224 (289)
T ss_dssp TTTTCEEEEEE
T ss_pred CCCceEEEEeC
Confidence 33 44444444
No 126
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=96.07 E-value=0.0085 Score=59.24 Aligned_cols=157 Identities=11% Similarity=0.021 Sum_probs=95.2
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++||-...... ......+...++|+|......+. +.+..+..++..-++.+++++...|.++++++...
T Consensus 65 ~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 137 (290)
T 2rgy_A 65 GRDCDGVVVISHDLH-DEDLDELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGP 137 (290)
T ss_dssp HTTCSEEEECCSSSC-HHHHHHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred hcCccEEEEecCCCC-HHHHHHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCC
Confidence 578888875333222 23344455679999987643322 12335677888888888999888899999999865
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEec-CCCCcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHHcCCCC-
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLAL-PHFPSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANKMKMME- 160 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~-~~~~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~~g~~~- 160 (720)
... ....-.+.+++.+++.|+++.....+ ...+..+-...++++.+ .++++|+ +.+...+..+++++++.|+.-
T Consensus 138 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP 216 (290)
T 2rgy_A 138 FTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVP 216 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTT
T ss_pred CCCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCC
Confidence 331 11222677888999988754221111 11111122233444332 3678865 566777889999999999863
Q ss_pred CCeEEEEeCc
Q 043468 161 KDYIWITTDA 170 (720)
Q Consensus 161 ~~~~~i~~~~ 170 (720)
.+...++-+.
T Consensus 217 ~di~vvg~D~ 226 (290)
T 2rgy_A 217 GDVSVIGYDD 226 (290)
T ss_dssp TTCEEEEEEC
T ss_pred CceEEEEeCC
Confidence 2444454433
No 127
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=96.04 E-value=0.05 Score=53.57 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=99.4
Q ss_pred cCCeEEEEC-CCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHh-C-CCe-----
Q 043468 6 SQKVEAILG-PQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQS-W-EWH----- 77 (720)
Q Consensus 6 ~~~v~aiiG-p~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~-~-~~~----- 77 (720)
++++++||- |..+.........+...++|+|......+. .+.+..+..++...+..+++++.. . |.+
T Consensus 62 ~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~ 136 (293)
T 3l6u_A 62 HLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTG 136 (293)
T ss_dssp HTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCE
T ss_pred HcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCc
Confidence 467777754 444444445666777789999987654322 124556778888888999998766 4 766
Q ss_pred EEEEEEEcCCC-cccCcHHHHHHHHHHc-CcEEEEEEecCCCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHH
Q 043468 78 QVTVIYEDIDS-SATGILPHLSDALREA-GAEIIHVLALPHFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKA 153 (720)
Q Consensus 78 ~v~ii~~~~~~-g~~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a 153 (720)
+++++...... ....-.+.+++.+++. |+++....... .+..+-...+.++.+. ++++| ++.+...+..+++++
T Consensus 137 ~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al 214 (293)
T 3l6u_A 137 RIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGN-YDPVTSERVMRQVIDSGIPFDAV-YCHNDDIAMGVLEAL 214 (293)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECT-TCHHHHHHHHHHHHHTTCCCSEE-EESSHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccCC-CCHHHHHHHHHHHHHhCCCCCEE-EECCchHHHHHHHHH
Confidence 99999754332 1122367888999998 98876553222 2221333444554333 56664 556777788999999
Q ss_pred HHcCCCCCCeEEEEeC
Q 043468 154 NKMKMMEKDYIWITTD 169 (720)
Q Consensus 154 ~~~g~~~~~~~~i~~~ 169 (720)
++.|+. +...++.+
T Consensus 215 ~~~g~~--di~vig~d 228 (293)
T 3l6u_A 215 KKAKIS--GKIVVGID 228 (293)
T ss_dssp HHTTCC--CCEEEEEE
T ss_pred HhCCCC--CeEEEEec
Confidence 999986 44444433
No 128
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=95.88 E-value=0.019 Score=57.11 Aligned_cols=80 Identities=4% Similarity=-0.039 Sum_probs=55.4
Q ss_pred eEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeee-eeeec---cceeeeeecccccccceEEEE
Q 043468 375 YFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGD-VAIVA---RRCQYADFTHPYTESGLVMIF 450 (720)
Q Consensus 375 ~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~-~~~t~---~r~~~~~fs~p~~~~~~~~~v 450 (720)
.+.|+.+.+-+-+.++.|+++++.... ....++..|.+|++|+++++ ..... +......++.++...+..+++
T Consensus 16 ~~~~~~va~~~g~~~~~Gl~v~~~~~~---~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~ 92 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEGLDVDIVFPT---NPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPLNHVMF 92 (302)
T ss_dssp GGHHHHHHHHTTHHHHTTEEEEEECCS---STTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCCEEEEE
T ss_pred ccHHHHHHHHcChHHHcCCcEEEecCC---CCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccCCEEEEE
Confidence 345788888888889999876665322 34589999999999999876 22222 333455666667677888888
Q ss_pred ecccCCC
Q 043468 451 PVQKSGN 457 (720)
Q Consensus 451 ~~~~~~~ 457 (720)
++.....
T Consensus 93 ~~~s~i~ 99 (302)
T 3ix1_A 93 LAEQDFD 99 (302)
T ss_dssp EGGGCCS
T ss_pred ECCCCCC
Confidence 8765333
No 129
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=95.88 E-value=0.067 Score=52.92 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=97.8
Q ss_pred cCCeEEEEC-CCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCC--eEEEEE
Q 043468 6 SQKVEAILG-PQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEW--HQVTVI 82 (720)
Q Consensus 6 ~~~v~aiiG-p~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~--~~v~ii 82 (720)
.+++++||- |..+.........+...++|+|......+.. +.+-.+.+++...++.+++++...|. ++++++
T Consensus 67 ~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i 141 (304)
T 3gbv_A 67 EEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIF 141 (304)
T ss_dssp TTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEE
T ss_pred hcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 578888764 4444444556666777799999876543221 23455778888888999999888777 999999
Q ss_pred EEcCC-----CcccCcHHHHHHHHHHcCcE--EEEEEecCCCCcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHH
Q 043468 83 YEDID-----SSATGILPHLSDALREAGAE--IIHVLALPHFPSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKA 153 (720)
Q Consensus 83 ~~~~~-----~g~~~~~~~~~~~~~~~g~~--v~~~~~~~~~~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a 153 (720)
..+.. .......+.+++.+++.|.. +.....-..... .-...+.++.+ .++++|+...+. +..+++++
T Consensus 142 ~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al 218 (304)
T 3gbv_A 142 RKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNI-EDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYL 218 (304)
T ss_dssp EEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSS-CHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHH
T ss_pred EecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHH-HHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHH
Confidence 85321 11122367888999998754 333222122222 33444444432 367887665554 77899999
Q ss_pred HHcCCCCCCeEEEEeCc
Q 043468 154 NKMKMMEKDYIWITTDA 170 (720)
Q Consensus 154 ~~~g~~~~~~~~i~~~~ 170 (720)
++.|+ .+...++.+.
T Consensus 219 ~~~g~--~di~vig~d~ 233 (304)
T 3gbv_A 219 QQRRK--SDFSLIGYDL 233 (304)
T ss_dssp HHTTC--CSCEEEEESC
T ss_pred HHcCC--CCcEEEEeCC
Confidence 99998 3555555544
No 130
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=95.85 E-value=0.018 Score=58.21 Aligned_cols=157 Identities=15% Similarity=0.085 Sum_probs=95.1
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++||-...... ......+...++|+|......+. +.+..+..++..-+..+++++...|.++++++..+
T Consensus 117 ~~~vdgiI~~~~~~~-~~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 189 (332)
T 2o20_A 117 SKQVDGIVYMGSSLD-EKIRTSLKNSRTPVVLVGTIDGD------KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGS 189 (332)
T ss_dssp HTTCSEEEECSSCCC-HHHHHHHHHHCCCEEEESCCCTT------SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSC
T ss_pred hCCCCEEEEeCCCCC-HHHHHHHHhCCCCEEEEccccCC------CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 578888875332222 22334445679999987643221 22334677888788888999888899999999765
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEecCCC-CcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCC-CC
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLALPHF-PSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMME-KD 162 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~-~~ 162 (720)
... ....-.+.+++.+++.|+.+.....+... +..+-...+.++.+.++++|+. .+...+..+++++++.|+.- .+
T Consensus 190 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~d 268 (332)
T 2o20_A 190 LKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPED 268 (332)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTT
T ss_pred cccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccC
Confidence 331 11122678889999999764321112211 1112223344433237888654 56677889999999999863 34
Q ss_pred eEEEEeCc
Q 043468 163 YIWITTDA 170 (720)
Q Consensus 163 ~~~i~~~~ 170 (720)
...++-+.
T Consensus 269 isvig~D~ 276 (332)
T 2o20_A 269 FEIISGAN 276 (332)
T ss_dssp CEEEESSC
T ss_pred EEEEEeCC
Confidence 44454443
No 131
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=95.80 E-value=0.1 Score=54.36 Aligned_cols=160 Identities=9% Similarity=0.072 Sum_probs=99.4
Q ss_pred ccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468 5 DSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE 84 (720)
Q Consensus 5 ~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~ 84 (720)
.+.+|++||-. .........+...++|+|..+...+... ..+.+-.+..++..-++.+++++...|.++++++..
T Consensus 73 ~~~~vDGiIi~---~~~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~ 147 (412)
T 4fe7_A 73 KDWLGDGVIAD---FDDKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGL 147 (412)
T ss_dssp --CCCSEEEEE---TTCHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred hcCCCCEEEEe---cCChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecc
Confidence 35788888752 2234556677888999998775433211 113445577888888889999998899999999976
Q ss_pred cCCCc---ccCcHHHHHHHHHHcCcEEEEEEecCCCCc--ccHHHHHHHh-hc-CCCeEEEEEcCHHHHHHHHHHHHHcC
Q 043468 85 DIDSS---ATGILPHLSDALREAGAEIIHVLALPHFPS--SRLSEELEKL-KG-GQCRVFVVHLSLELAVHLFEKANKMK 157 (720)
Q Consensus 85 ~~~~g---~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~--~d~~~~l~~i-~~-~~~~vvil~~~~~~~~~~l~~a~~~g 157 (720)
..... ...-.+.+++.+++.|+............. .+....+.++ +. .++++ |++.+...+..+++++++.|
T Consensus 148 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-I~~~nD~~A~g~~~al~~~G 226 (412)
T 4fe7_A 148 PESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTG-IIAVTDARARHILQVCEHLH 226 (412)
T ss_dssp CTTSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEE-EEESSHHHHHHHHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeE-EEEEecHHHHHHHHHHHHcC
Confidence 65432 122367888999999876432211111111 0222233333 22 36777 44667788889999999999
Q ss_pred CCC-CCeEEEEeCc
Q 043468 158 MME-KDYIWITTDA 170 (720)
Q Consensus 158 ~~~-~~~~~i~~~~ 170 (720)
+.. .+...++-+.
T Consensus 227 ~~vP~disvig~D~ 240 (412)
T 4fe7_A 227 IPVPEKLCVIGIDN 240 (412)
T ss_dssp CCTTTTSEEEESSC
T ss_pred CCCCceEEEEeecc
Confidence 853 3455555443
No 132
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=95.71 E-value=0.01 Score=58.76 Aligned_cols=148 Identities=13% Similarity=0.088 Sum_probs=92.9
Q ss_pred cCCeEEEEC-CCCCh---hhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEE
Q 043468 6 SQKVEAILG-PQTSE---ETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTV 81 (720)
Q Consensus 6 ~~~v~aiiG-p~~s~---~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~i 81 (720)
.+++++||- |..+. ........+...++|+|......+.. .+..+..++..-++.+++++...|.+++++
T Consensus 69 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~------~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~ 142 (298)
T 3tb6_A 69 SQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAEL------AAPSFTLDDVKGGMMAAEHLLSLGHTHMMG 142 (298)
T ss_dssp HTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTC------SSCEEEECHHHHHHHHHHHHHHTTCCSEEE
T ss_pred HCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcCCC------CCCEEEeCcHHHHHHHHHHHHHCCCCcEEE
Confidence 577887764 33322 34456667778899999876543221 223467788888899999998889999999
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEe--cCCCCccc-HHHHHHHhhcC--C--CeEEEEEcCHHHHHHHHHHHH
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLA--LPHFPSSR-LSEELEKLKGG--Q--CRVFVVHLSLELAVHLFEKAN 154 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~--~~~~~~~d-~~~~l~~i~~~--~--~~vvil~~~~~~~~~~l~~a~ 154 (720)
+..........-.+.+++.+++.|+.+..... ........ ....+.++.+. + +++|+ +.+...+..++++++
T Consensus 143 i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~ 221 (298)
T 3tb6_A 143 IFKADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLR 221 (298)
T ss_dssp EEESSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHH
T ss_pred EcCCCCccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHH
Confidence 98755422222367889999999876422111 11110001 12334443322 3 67744 556777889999999
Q ss_pred HcCCCC
Q 043468 155 KMKMME 160 (720)
Q Consensus 155 ~~g~~~ 160 (720)
+.|+.-
T Consensus 222 ~~g~~v 227 (298)
T 3tb6_A 222 EMDLKV 227 (298)
T ss_dssp HTTCCT
T ss_pred HcCCCC
Confidence 999863
No 133
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=95.69 E-value=0.054 Score=53.81 Aligned_cols=161 Identities=15% Similarity=0.138 Sum_probs=94.5
Q ss_pred cCCeEEEECCCCC-hhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCC---CeEEEE
Q 043468 6 SQKVEAILGPQTS-EETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWE---WHQVTV 81 (720)
Q Consensus 6 ~~~v~aiiGp~~s-~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~---~~~v~i 81 (720)
+++|++||-...+ .........+...++|+|......+... ..+++..+..++..-++.+++++...| .+++++
T Consensus 56 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~ 133 (306)
T 2vk2_A 56 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD--KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVE 133 (306)
T ss_dssp HHTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCSC--GGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HcCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCCCCCCC--ccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 4678887653333 2223445556678999998764322111 011345677888888888888887665 789999
Q ss_pred EEEcCCC-cccCcHHHHHHHHHHcCc-EEEEEEecCCCCcccHHHHHHHhhc-----CCCeEEEEEcCHHHHHHHHHHHH
Q 043468 82 IYEDIDS-SATGILPHLSDALREAGA-EIIHVLALPHFPSSRLSEELEKLKG-----GQCRVFVVHLSLELAVHLFEKAN 154 (720)
Q Consensus 82 i~~~~~~-g~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~~d~~~~l~~i~~-----~~~~vvil~~~~~~~~~~l~~a~ 154 (720)
+...... ....-.+.+++.+++.|. ++.... ....+..+-...++++.+ .++++|+ +.+...+..++++++
T Consensus 134 i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~-~~nd~~A~g~~~al~ 211 (306)
T 2vk2_A 134 LQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQ-SGDFTRSKGKEVMESFIKAENNGKNICMVY-AHNDDMVIGAIQAIK 211 (306)
T ss_dssp EECSTTCHHHHHHHHHHHHHTTTCTTEEEEEEE-ECTTCHHHHHHHHHHHHHHTTTTTTCCEEE-ESSHHHHHHHHHHHH
T ss_pred EEcCCCChhHHHHHHHHHHHHhhCCCeEEEEec-cCCCcHHHHHHHHHHHHHhCCCCCCeeEEE-ECCchHHHHHHHHHH
Confidence 9765331 111225778888888885 333221 111111122334444432 3577754 456677888999999
Q ss_pred HcCCCC-CCeEEEEeCc
Q 043468 155 KMKMME-KDYIWITTDA 170 (720)
Q Consensus 155 ~~g~~~-~~~~~i~~~~ 170 (720)
+.|+.- .+...++.+.
T Consensus 212 ~~G~~vP~di~vig~D~ 228 (306)
T 2vk2_A 212 EAGLKPGKDILTGSIDG 228 (306)
T ss_dssp HTTCCBTTTBEEEEEEC
T ss_pred HcCCCCCCCeEEEeecC
Confidence 999853 2444444433
No 134
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=95.68 E-value=0.14 Score=49.76 Aligned_cols=156 Identities=12% Similarity=0.142 Sum_probs=93.2
Q ss_pred cCCeEEEEC-CCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhC--CCeEEEEE
Q 043468 6 SQKVEAILG-PQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSW--EWHQVTVI 82 (720)
Q Consensus 6 ~~~v~aiiG-p~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~--~~~~v~ii 82 (720)
.++|++||- |..+.........+...++|+|......+. . +..-.+..++..-++..++++... |.++++++
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i 129 (271)
T 2dri_A 55 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK---G--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 129 (271)
T ss_dssp TTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS---S--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEecCCCCC---C--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 578988763 333332233445566789999987643221 1 122246677777788888887665 56899999
Q ss_pred EEcCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 83 YEDIDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 83 ~~~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
...... ....-.+.+++.+++.|+++..... ...+..+-...++++.+ .++++ |++.+...+..+++++++.|+
T Consensus 130 ~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~g~- 206 (271)
T 2dri_A 130 QGIAGTSAARERGEGFQQAVAAHKFNVLASQP-ADFDRIKGLNVMQNLLTAHPDVQA-VFAQNDEMALGALRALQTAGK- 206 (271)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHTCEEEEEEE-CTTCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHHTC-
T ss_pred ECCCCCccHhHHHHHHHHHHhcCCCEEEEecC-CCCCHHHHHHHHHHHHHhCCCccE-EEECCCcHHHHHHHHHHHcCC-
Confidence 754332 1112257789999999987654321 11111122233344322 35676 556677778999999999998
Q ss_pred CCCeEEEEeCc
Q 043468 160 EKDYIWITTDA 170 (720)
Q Consensus 160 ~~~~~~i~~~~ 170 (720)
.+...++-+.
T Consensus 207 -~dv~vvGfD~ 216 (271)
T 2dri_A 207 -SDVMVVGFDG 216 (271)
T ss_dssp -CSCEEEEEEC
T ss_pred -CCcEEEEecC
Confidence 3555554443
No 135
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=95.56 E-value=0.072 Score=51.20 Aligned_cols=149 Identities=8% Similarity=0.032 Sum_probs=91.5
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++++++|-...+.... +.+...++|+|...... +.+-.+..++..-++.+++++...|.++++++...
T Consensus 56 ~~~vdgiI~~~~~~~~~---~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~ 124 (255)
T 1byk_A 56 RRNIDGVVLFGFTGITE---EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVP 124 (255)
T ss_dssp TTTCCEEEEECCTTCCT---TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred hcCCCEEEEecCccccH---HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 56787765322211111 23445688988765421 12345777888888889999888899999999864
Q ss_pred --CCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCe
Q 043468 86 --IDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDY 163 (720)
Q Consensus 86 --~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~~~~ 163 (720)
+......-.+.+++.+++.|+.+.. .....+..+-...++++.+.++++|+ +++...+..+++++++.|+ .+.
T Consensus 125 ~~~~~~~~~R~~gf~~al~~~g~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~~~g~--~di 199 (255)
T 1byk_A 125 HSDVTTGKRRHEAYLAFCKAHKLHPVA--ALPGLAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI--DTL 199 (255)
T ss_dssp TTSTTTTHHHHHHHHHHHHHTTCCCEE--ECCCSCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC--CSC
T ss_pred CCCcccHHHHHHHHHHHHHHcCCCcce--eecCCccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHHHcCC--CcE
Confidence 2221122267889999999976431 11111111222344444445678754 5666788899999999998 355
Q ss_pred EEEEeCc
Q 043468 164 IWITTDA 170 (720)
Q Consensus 164 ~~i~~~~ 170 (720)
..++-+.
T Consensus 200 ~vig~d~ 206 (255)
T 1byk_A 200 QLASVGN 206 (255)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 5555444
No 136
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=95.54 E-value=0.076 Score=54.08 Aligned_cols=147 Identities=13% Similarity=0.125 Sum_probs=93.1
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
.+++++||-..... .......+...++|+|....... . +....+..++..-+..++++|...|.++++++...
T Consensus 124 ~~~vdGiI~~~~~~-~~~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~ 196 (355)
T 3e3m_A 124 RRRPEAMVLSYDGH-TEQTIRLLQRASIPIVEIWEKPA---H---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEK 196 (355)
T ss_dssp HTCCSEEEEECSCC-CHHHHHHHHHCCSCEEEESSCCS---S---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred hCCCCEEEEeCCCC-CHHHHHHHHhCCCCEEEECCccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccC
Confidence 46777775322221 23445667778999998642211 1 22346778888888889999988999999999876
Q ss_pred CCCc--ccCcHHHHHHHHHHcCcEEEEEEecCCCC--cccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 86 IDSS--ATGILPHLSDALREAGAEIIHVLALPHFP--SSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 86 ~~~g--~~~~~~~~~~~~~~~g~~v~~~~~~~~~~--~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
.... ...-.+.+++.+++.|+.+.....+..+. ..+-...+.++.+ .++++| ++.+...+..+++++++.|+.
T Consensus 197 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~~ 275 (355)
T 3e3m_A 197 DDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCI-FCVSDMPAFGLLSRLKSIGVA 275 (355)
T ss_dssp SCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHHHTCC
T ss_pred cccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEE-EECChHHHHHHHHHHHHcCCC
Confidence 5421 12237889999999998654222222211 1122233444332 367774 456777888999999999986
Q ss_pred C
Q 043468 160 E 160 (720)
Q Consensus 160 ~ 160 (720)
-
T Consensus 276 v 276 (355)
T 3e3m_A 276 V 276 (355)
T ss_dssp T
T ss_pred C
Confidence 3
No 137
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=95.51 E-value=0.13 Score=50.53 Aligned_cols=162 Identities=10% Similarity=0.053 Sum_probs=94.8
Q ss_pred cCCeEEEE-CCCCChhhHHHHHhhccCCCcEEecccCCcccc--cCCCCeEEEeecChHHHHHHHHHHHHhC-C--CeEE
Q 043468 6 SQKVEAIL-GPQTSEETSSVAEIASKKQIPVLSFADATPNWA--TERWPFLLQASQNQLAQMKAIAAIVQSW-E--WHQV 79 (720)
Q Consensus 6 ~~~v~aii-Gp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~--~~~~~~~fr~~p~~~~~~~~~~~~l~~~-~--~~~v 79 (720)
.++|++|| .|..+.........+...++|+|......+... +...+..-.+..++..-++..+++|... | .+++
T Consensus 57 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I 136 (288)
T 1gud_A 57 NKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEV 136 (288)
T ss_dssp TSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEE
Confidence 57788876 344333222334455668999998764322110 0000111346778877888889998666 8 8999
Q ss_pred EEEEEcCCCc-ccCcHHHHHHHHHHc-CcEEEEEEecCCCCcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHH
Q 043468 80 TVIYEDIDSS-ATGILPHLSDALREA-GAEIIHVLALPHFPSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANK 155 (720)
Q Consensus 80 ~ii~~~~~~g-~~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~ 155 (720)
+++....... ...-.+.+++.+++. |+++..... ...+..+-...++++.+ ..+++ |++.+...+..+++++++
T Consensus 137 ~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~ 214 (288)
T 1gud_A 137 AIIEGKAGNASGEARRNGATEAFKKASQIKLVASQP-ADWDRIKALDVATNVLQRNPNIKA-IYCANDTMAMGVAQAVAN 214 (288)
T ss_dssp EEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEEEE-CTTCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHH
T ss_pred EEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEEeec-CCccHHHHHHHHHHHHHhCCCceE-EEECCCchHHHHHHHHHh
Confidence 9998654321 111256788899888 887654322 11111122233444332 25677 445666788999999999
Q ss_pred cCCCCCCeEEEEeCc
Q 043468 156 MKMMEKDYIWITTDA 170 (720)
Q Consensus 156 ~g~~~~~~~~i~~~~ 170 (720)
.|+. .+...++-+.
T Consensus 215 ~G~~-~dv~vvGfD~ 228 (288)
T 1gud_A 215 AGKT-GKVLVVGTDG 228 (288)
T ss_dssp TTCT-TTSEEEEESC
T ss_pred cCCC-CCeEEEEeCC
Confidence 9985 4555555444
No 138
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=95.38 E-value=0.026 Score=56.08 Aligned_cols=129 Identities=13% Similarity=0.219 Sum_probs=79.8
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccc------cCCCCeEEEeecChHHHHHHHHHHHHhC--CCe
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWA------TERWPFLLQASQNQLAQMKAIAAIVQSW--EWH 77 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~------~~~~~~~fr~~p~~~~~~~~~~~~l~~~--~~~ 77 (720)
+++|++||.... .....+.. ...++|+|..+...+... ....+++..+.-. ......++++.+. |.+
T Consensus 67 ~~~vDgII~~~~-~~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~~--~~~~~~~~~l~~~~Pg~~ 141 (302)
T 2qh8_A 67 GENPDVLVGIAT-PTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDL--SPVEQHVELIKEILPNVK 141 (302)
T ss_dssp HTCCSEEEEESH-HHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECC--CCHHHHHHHHHHHSTTCC
T ss_pred hCCCCEEEECCh-HHHHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEECC--cCHHHHHHHHHHhCCCCc
Confidence 678888886432 22233333 267999998775433210 1112344444322 1245667887776 999
Q ss_pred EEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCH
Q 043468 78 QVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSL 143 (720)
Q Consensus 78 ~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~ 143 (720)
++++|+...........+.+++.+++.|+++....... .. +....++++. .++++|+...+.
T Consensus 142 ~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~~--~~-~~~~~~~~l~-~~~dai~~~~D~ 203 (302)
T 2qh8_A 142 SIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALK--SA-DVQSATQAIA-EKSDVIYALIDN 203 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSS--GG-GHHHHHHHHG-GGCSEEEECSCH
T ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEecCC--hH-HHHHHHHHHh-ccCCEEEECCcH
Confidence 99999976542122336889999999999876554322 22 7778888886 478998876554
No 139
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=95.34 E-value=0.036 Score=56.20 Aligned_cols=148 Identities=10% Similarity=0.040 Sum_probs=93.4
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
++++++||-.... ........+...++|+|..+.... .+....+..++..-+..+++++...|.++++++...
T Consensus 122 ~~~vdGiIi~~~~-~~~~~~~~l~~~~iPvV~i~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 194 (344)
T 3kjx_A 122 SWRPSGVIIAGLE-HSEAARAMLDAAGIPVVEIMDSDG------KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTK 194 (344)
T ss_dssp TTCCSEEEEECSC-CCHHHHHHHHHCSSCEEEEEECSS------CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESS
T ss_pred hCCCCEEEEECCC-CCHHHHHHHHhCCCCEEEEeCCCC------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 4677777532221 223455667778999998742111 123345778888888899999888899999999765
Q ss_pred C--CCcccCcHHHHHHHHHHcCcEEEEEEecCCCC-cccHHHHHHHhh-c-CCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 86 I--DSSATGILPHLSDALREAGAEIIHVLALPHFP-SSRLSEELEKLK-G-GQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 86 ~--~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~d~~~~l~~i~-~-~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
. ......-.+.+++.+++.|+.+.....+.... ..+-...+.++. + .++++|+ +++...+..+++++++.|+.-
T Consensus 195 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~v 273 (344)
T 3kjx_A 195 MPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDI 273 (344)
T ss_dssp TTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred cccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCC
Confidence 4 21112226788999999998655443332221 112223333332 2 3677755 667788899999999999864
Q ss_pred C
Q 043468 161 K 161 (720)
Q Consensus 161 ~ 161 (720)
+
T Consensus 274 P 274 (344)
T 3kjx_A 274 P 274 (344)
T ss_dssp T
T ss_pred C
Confidence 3
No 140
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=95.30 E-value=0.041 Score=53.76 Aligned_cols=146 Identities=11% Similarity=0.093 Sum_probs=85.8
Q ss_pred cCCeEEEECCCCChhhHHHHH-hhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAE-IASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~-~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~ 84 (720)
.+++++||-.. . ...... .+...++|+|......+. +. .+..++...++.+++++...|.++++++..
T Consensus 62 ~~~~dgiIi~~--~-~~~~~~~~l~~~~iPvV~~~~~~~~------~~--~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~ 130 (277)
T 3e61_A 62 SHNCTGMISTA--F-NENIIENTLTDHHIPFVFIDRINNE------HN--GISTNHFKGGQLQAEVVRKGKGKNVLIVHE 130 (277)
T ss_dssp HTTCSEEEECG--G-GHHHHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred hCCCCEEEEec--C-ChHHHHHHHHcCCCCEEEEeccCCC------CC--eEEechHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 56788877432 2 233345 677789999987754332 11 677888888888999998889999999986
Q ss_pred cCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhc-CCCeEEEEEcCHHHHHHHHHHHHHcCCCCC-
Q 043468 85 DIDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKG-GQCRVFVVHLSLELAVHLFEKANKMKMMEK- 161 (720)
Q Consensus 85 ~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~-~~~~vvil~~~~~~~~~~l~~a~~~g~~~~- 161 (720)
.... ....-.+.+++.+++.|+.+.. ...... +.....+.+.. .++++| ++.+...+..+++++++.|+.-+
T Consensus 131 ~~~~~~~~~R~~gf~~~l~~~~~~~~~-~~~~~~---~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~vP~ 205 (277)
T 3e61_A 131 NLLIDAFHQRVQGIKYILDQQRIDYKM-LEATLL---DNDKKFIDLIKELSIDSI-ICSNDLLAINVLGIVQRYHFKVPA 205 (277)
T ss_dssp CTTSHHHHHHHHHHHHHHHC---CEEE-EEGGGG---GSHHHHHHHHHHHTCCEE-EESSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCCccHHHHHHHHHHHHHHcCCCccc-eecCCC---CHHHHHHHhhcCCCCCEE-EECCcHHHHHHHHHHHHcCCCCCC
Confidence 5432 1122267888999999987665 222211 22222222332 367774 45577788899999999998633
Q ss_pred CeEEEE
Q 043468 162 DYIWIT 167 (720)
Q Consensus 162 ~~~~i~ 167 (720)
+...++
T Consensus 206 di~vig 211 (277)
T 3e61_A 206 EIQIIG 211 (277)
T ss_dssp TCEEEC
T ss_pred ceEEEe
Confidence 344443
No 141
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=95.24 E-value=0.063 Score=53.31 Aligned_cols=155 Identities=7% Similarity=0.078 Sum_probs=95.8
Q ss_pred ccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468 5 DSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE 84 (720)
Q Consensus 5 ~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~ 84 (720)
..++|++||-...... ......+...++|+|...... .. +.+-.+..++..-+..+++++...|.++++++..
T Consensus 80 ~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~ 152 (305)
T 3huu_A 80 QSKSVDGFILLYSLKD-DPIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQE 152 (305)
T ss_dssp HTTCCSEEEESSCBTT-CHHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HhCCCCEEEEeCCcCC-cHHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcC
Confidence 3578888763222222 245566777899999876533 11 2234467888888888999998889999999987
Q ss_pred cCCCc-ccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHh-hc--CCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 85 DIDSS-ATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKL-KG--GQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 85 ~~~~g-~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i-~~--~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
..... ...-.+.+++.+++.|+.+.. .. ..... .-...+.++ .+ .++++|+ +.+...+..+++++++.|+.-
T Consensus 153 ~~~~~~~~~R~~Gf~~~l~~~g~~~~~-~~-~~~~~-~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~v 228 (305)
T 3huu_A 153 SGHYAVTEDRSVGFKQYCDDVKISNDC-VV-IKSMN-DLRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRI 228 (305)
T ss_dssp SSCBHHHHHHHHHHHHHHHHTTCCCCE-EE-ECSHH-HHHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred CcccchhHHHHHHHHHHHHHcCCCccc-EE-ecCcH-HHHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCC
Confidence 65421 112268889999999986544 21 11111 122233334 22 3677754 567788889999999999863
Q ss_pred -CCeEEEEeCc
Q 043468 161 -KDYIWITTDA 170 (720)
Q Consensus 161 -~~~~~i~~~~ 170 (720)
.+...++-+.
T Consensus 229 P~di~vig~D~ 239 (305)
T 3huu_A 229 PEDIQTATFNT 239 (305)
T ss_dssp TTTCEEEEESC
T ss_pred CcceEEEEECC
Confidence 2444454443
No 142
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=95.23 E-value=0.097 Score=52.30 Aligned_cols=157 Identities=11% Similarity=0.058 Sum_probs=86.1
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccC-CCcEEecccCCcccccCCCCeEEEeecChHHHHHHH----HHHHHhCCC-eEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKK-QIPVLSFADATPNWATERWPFLLQASQNQLAQMKAI----AAIVQSWEW-HQV 79 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~-~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~----~~~l~~~~~-~~v 79 (720)
++++++||..... ...++..++..+ ++|++......+. .+.+-.+.... .++..+ +.++...|. ++|
T Consensus 60 ~~~~dgIi~~~~~-~~~~~~~~a~~~p~~p~v~id~~~~~-----~~~~~~v~~d~-~~~~~lag~~a~~l~~~Gh~r~I 132 (318)
T 2fqx_A 60 DENMGLVVACGSF-LVEAVIETSARFPKQKFLVIDAVVQD-----RDNVVSAVFGQ-NEGSFLVGVAAALKAKEAGKSAV 132 (318)
T ss_dssp HTTCSEEEEESTT-THHHHHHHHHHCTTSCEEEESSCCCS-----CTTEEEEEECH-HHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HcCCCEEEECChh-HHHHHHHHHHHCCCCEEEEEcCccCC-----CCCEEEEEech-HHHHHHHHHHHHHHhccCCCcEE
Confidence 4678888863322 223355555543 8998876543210 12333344443 344333 466767776 899
Q ss_pred EEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCC--CcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcC
Q 043468 80 TVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHF--PSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMK 157 (720)
Q Consensus 80 ~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g 157 (720)
++|............+.+++.+++.|..+.....+... +...-....+++.+.++|+|+ +.....+..+++++++.|
T Consensus 133 g~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~d~~a~Gv~~a~~e~g 211 (318)
T 2fqx_A 133 GFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIF-QVAGGTGNGVIKEARDRR 211 (318)
T ss_dssp EEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEE-EECGGGHHHHHHHHHHHH
T ss_pred EEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEE-ECCCCCchHHHHHHHhhh
Confidence 99975433211222677888898888644333333221 111222344455456799855 455566778888898877
Q ss_pred CCCCCeEEEEeCc
Q 043468 158 MMEKDYIWITTDA 170 (720)
Q Consensus 158 ~~~~~~~~i~~~~ 170 (720)
+.+.+...++-+.
T Consensus 212 ~~P~dv~viG~D~ 224 (318)
T 2fqx_A 212 LNGQDVWVIGVDR 224 (318)
T ss_dssp HTTCCCEEEEEES
T ss_pred hccCCcEEEEEec
Confidence 7622333444333
No 143
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=95.21 E-value=0.07 Score=52.89 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=94.7
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
.++|++||-.............+.. ++|+|......+. .+-.+..++..-++.++++|...|.++++++...
T Consensus 69 ~~~vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i~~~~~~-------~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 140 (303)
T 3kke_A 69 EGRVDGVLLQRREDFDDDMLAAVLE-GVPAVTINSRVPG-------RVGSVILDDQKGGGIATEHLITLGHSRIAFISGT 140 (303)
T ss_dssp SCSSSEEEECCCTTCCHHHHHHHHT-TSCEEEESCCCTT-------CCCEEEECHHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred hCCCcEEEEecCCCCcHHHHHHHhC-CCCEEEECCcCCC-------CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 5788887653333333313344445 9999987654332 2234667888888888999988999999999865
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEec-CCCCcccHHHHHHHh-----hcC--CCeEEEEEcCHHHHHHHHHHHHHc
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLAL-PHFPSSRLSEELEKL-----KGG--QCRVFVVHLSLELAVHLFEKANKM 156 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~-~~~~~~d~~~~l~~i-----~~~--~~~vvil~~~~~~~~~~l~~a~~~ 156 (720)
... ....-.+.+++.+++.|+.+...... ...+..+-...+.++ .+. ++++| ++.+...+..+++++++.
T Consensus 141 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai-~~~nd~~A~g~~~al~~~ 219 (303)
T 3kke_A 141 AIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAV-VVASVNAAVGALSTALRL 219 (303)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEE-EESSHHHHHHHHHHHHHT
T ss_pred CcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEE-EECCHHHHHHHHHHHHHc
Confidence 431 11222678899999999764321111 111111333445555 433 56774 456677788999999999
Q ss_pred CCCCC-CeEEEEeC
Q 043468 157 KMMEK-DYIWITTD 169 (720)
Q Consensus 157 g~~~~-~~~~i~~~ 169 (720)
|+.-+ +...++-+
T Consensus 220 G~~vP~di~vig~D 233 (303)
T 3kke_A 220 GLRVPEDLSIVGIN 233 (303)
T ss_dssp TCCTTTTCEEEEES
T ss_pred CCCCCCceEEEEEc
Confidence 98633 34444433
No 144
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=95.20 E-value=0.026 Score=56.97 Aligned_cols=141 Identities=14% Similarity=0.122 Sum_probs=88.3
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++|| ....... +.+...++|+|......+. . +..+..++..-+..+++++...|.++++++...
T Consensus 114 ~~~vdgiI-~~~~~~~----~~l~~~~iPvV~~~~~~~~----~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 181 (330)
T 3ctp_A 114 SHRVAGII-ASRSQCE----DEYANIDIPVVAFENHILD----N---IITISSDNYNGGRMAFDHLYEKGCRKILHIKGP 181 (330)
T ss_dssp HTTCSEEE-EETCCCS----GGGTTCCSCEEEESSCCCT----T---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred hCCCCEEE-ECCCCCH----HHHHhcCCCEEEEeccCCC----C---CCEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 57888888 4332221 2355789999987653321 1 234667777778888999888899999999875
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEecCCC-CcccHHHHHHHhhc-CCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLALPHF-PSSRLSEELEKLKG-GQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~i~~-~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
... ....-.+.+++.+++.|+.+. ...+... +..+-...+.++.+ .++++|+ +.+...+..+++++++.|+.-
T Consensus 182 ~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~-~~~d~~A~g~~~al~~~G~~v 257 (330)
T 3ctp_A 182 EVFEATELRYKGFLDGARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDGIF-VFNDIAAATVMRALKKRGVSI 257 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred ccCccHHHHHHHHHHHHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCC
Confidence 432 112226788999999998765 3322211 11111122333333 3577755 455667888999999999863
No 145
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=95.16 E-value=0.043 Score=53.65 Aligned_cols=143 Identities=8% Similarity=0.077 Sum_probs=92.9
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccC-CcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADA-TPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~-~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~ 84 (720)
.++|++||-.. . ....+...++|+|..... .+. +.. .+..++..-++.+++++. .|.++++++..
T Consensus 65 ~~~vdgiIi~~-~-----~~~~~~~~~iPvV~~~~~~~~~------~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~ 130 (277)
T 3hs3_A 65 NNNVDGIITSA-F-----TIPPNFHLNTPLVMYDSANIND------DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHW 130 (277)
T ss_dssp HTTCSEEEEEC-C-----CCCTTCCCSSCEEEESCCCCCS------SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEES
T ss_pred hCCCCEEEEcc-h-----HHHHHHhCCCCEEEEcccccCC------CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeC
Confidence 46677765322 1 123356679999987653 221 234 788888888888899988 99999999976
Q ss_pred cCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHHcCCCCC
Q 043468 85 DIDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANKMKMMEK 161 (720)
Q Consensus 85 ~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~~g~~~~ 161 (720)
.... ....-.+.+++.+++.|+++... .. .+.. + ...+.++.+ .++++| ++.+...+..+++++++.|+.-+
T Consensus 131 ~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~-~~~~-~-~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP 205 (277)
T 3hs3_A 131 PLSLPTIRERIEAMTAEASKLKIDYLLE-ET-PENN-P-YISAQSALNKSNQFDAI-ITVNDLYAAEIIKEAKRRNLKIP 205 (277)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCEEEEE-EC-CSSC-H-HHHHHHHHHTGGGCSEE-ECSSHHHHHHHHHHHHHTTCCTT
T ss_pred CCcCccHHHHHHHHHHHHHHCCCCCCCC-Cc-cCCc-h-HHHHHHHHcCCCCCCEE-EECCHHHHHHHHHHHHHcCCCCC
Confidence 5331 11222688899999999987665 33 3332 3 444444433 356774 45667778899999999998633
Q ss_pred -CeEEEE
Q 043468 162 -DYIWIT 167 (720)
Q Consensus 162 -~~~~i~ 167 (720)
+...++
T Consensus 206 ~di~vig 212 (277)
T 3hs3_A 206 DDFQLVG 212 (277)
T ss_dssp TTCEEEC
T ss_pred CceEEEe
Confidence 344443
No 146
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=95.13 E-value=0.072 Score=53.87 Aligned_cols=158 Identities=12% Similarity=0.106 Sum_probs=94.2
Q ss_pred cCCeEEEECCCCChhhHHHHHhhcc-CCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASK-KQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~-~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~ 84 (720)
+++|++||-...... ....+.+.. .++|+|......+. .++...+..++..-+..++++|...|.++++++..
T Consensus 112 ~~~vdgiI~~~~~~~-~~~~~~l~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g 185 (340)
T 1qpz_A 112 QKRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWGEAK-----ADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPG 185 (340)
T ss_dssp HTTCSEEEECCSCCC-HHHHHHHHTTTTSCEEEEEESSCC-----CSSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred cCCCCEEEEeCCCCC-hHHHHHHHhhCCCCEEEEecccCC-----CCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 577888874222211 223344433 69999987643221 12233577788888888899987789999999976
Q ss_pred cCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCC-CcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 85 DIDS-SATGILPHLSDALREAGAEIIHVLALPHF-PSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 85 ~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
.... ....-.+.+++.+++.|+.+.....+... +..+-...+.++.+. ++++|+ +.+...+..+++++++.|+.-
T Consensus 186 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~v 264 (340)
T 1qpz_A 186 PLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVF-CGGDIMAMGALCAADEMGLRV 264 (340)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred CCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCC
Confidence 4331 11222678899999999764322112211 111223345555443 577755 456677888999999999863
Q ss_pred -CCeEEEEeCc
Q 043468 161 -KDYIWITTDA 170 (720)
Q Consensus 161 -~~~~~i~~~~ 170 (720)
.+...++-+.
T Consensus 265 P~disvig~D~ 275 (340)
T 1qpz_A 265 PQDVSLIGYDN 275 (340)
T ss_dssp TTTCEEEEEEC
T ss_pred CCCeEEEeECC
Confidence 2444454433
No 147
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.11 E-value=0.087 Score=49.94 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCC--------cccHHHHHHH-h-hcCC
Q 043468 64 MKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFP--------SSRLSEELEK-L-KGGQ 133 (720)
Q Consensus 64 ~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~--------~~d~~~~l~~-i-~~~~ 133 (720)
+.+.++.++..|.+||+++.. +. ....+.+++.+++.|++|+......... .+.+...+++ + ...+
T Consensus 105 ~~A~~~al~~~g~~rvglltp---y~-~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (240)
T 3ixl_A 105 STAVLNGLRALGVRRVALATA---YI-DDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPD 180 (240)
T ss_dssp HHHHHHHHHHTTCSEEEEEES---SC-HHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhCCCEEEEEeC---Ch-HHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCC
Confidence 577888888899999999975 22 2225788899999999988876544322 1156667777 6 6678
Q ss_pred CeEEEEEcCHHHHHHHHHH
Q 043468 134 CRVFVVHLSLELAVHLFEK 152 (720)
Q Consensus 134 ~~vvil~~~~~~~~~~l~~ 152 (720)
+|+|++.|..-....++..
T Consensus 181 adaivL~CT~l~~l~~i~~ 199 (240)
T 3ixl_A 181 SDGILLSSGGLLTLDAIPE 199 (240)
T ss_dssp CSEEEEECTTSCCTTHHHH
T ss_pred CCEEEEeCCCCchhhhHHH
Confidence 9999998866544444443
No 148
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=95.00 E-value=0.081 Score=53.44 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=90.5
Q ss_pred cCCeEEEEC-CCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468 6 SQKVEAILG-PQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiG-p~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~ 84 (720)
.++|++||- |.... ......+...++|+|....... . +.. .+..++..-+..+++++...|.++++++..
T Consensus 116 ~~~vdGiIi~~~~~~--~~~~~~l~~~~iPvV~~~~~~~---~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 186 (339)
T 3h5o_A 116 QHRPDGVLITGLSHA--EPFERILSQHALPVVYMMDLAD---D---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGA 186 (339)
T ss_dssp TTCCSEEEEECSCCC--TTHHHHHHHTTCCEEEEESCCS---S---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred cCCCCEEEEeCCCCC--HHHHHHHhcCCCCEEEEeecCC---C---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 467777753 22222 2445566778999997753211 1 222 677888888888999998889999999987
Q ss_pred cCCCcccCcHHHHHHHHHHcCcEEEE-EEecCC-CCcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 85 DIDSSATGILPHLSDALREAGAEIIH-VLALPH-FPSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~g~~v~~-~~~~~~-~~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
........-.+.+++.+++.|+.... ...... .+..+-...+.++.+ .++++|+ +++...+..+++++++.|+.-
T Consensus 187 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~v 265 (339)
T 3h5o_A 187 QLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAV 265 (339)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred CCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCC
Confidence 64321122267788999999872111 111111 111122333444432 3677754 567778899999999999864
Q ss_pred C
Q 043468 161 K 161 (720)
Q Consensus 161 ~ 161 (720)
+
T Consensus 266 P 266 (339)
T 3h5o_A 266 P 266 (339)
T ss_dssp T
T ss_pred C
Confidence 3
No 149
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=94.99 E-value=0.071 Score=51.97 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=93.9
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
++++++||-..... ......+...++|+|......+. +.+-.+..++..-++.+++++...|.++++++...
T Consensus 61 ~~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 132 (276)
T 3jy6_A 61 SRGFDGLILQSFSN--PQTVQEILHQQMPVVSVDREMDA------CPWPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSE 132 (276)
T ss_dssp TTTCSEEEEESSCC--HHHHHHHHTTSSCEEEESCCCTT------CSSCEEECCHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred hCCCCEEEEecCCc--HHHHHHHHHCCCCEEEEecccCC------CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 56788876433333 55666777889999987643321 11334677888888999999988999999999886
Q ss_pred CC-Ccc-cCcHHHHHHHHHHcCcEEEEEEecCCC--C-cccHHHHHHHhhc-CCCeEEEEEcCHHHHHHHHHHHHHcCCC
Q 043468 86 ID-SSA-TGILPHLSDALREAGAEIIHVLALPHF--P-SSRLSEELEKLKG-GQCRVFVVHLSLELAVHLFEKANKMKMM 159 (720)
Q Consensus 86 ~~-~g~-~~~~~~~~~~~~~~g~~v~~~~~~~~~--~-~~d~~~~l~~i~~-~~~~vvil~~~~~~~~~~l~~a~~~g~~ 159 (720)
.. ... ....+.+++.+++.+. ..+... . ...+....+.+.. .++++| ++.+...+..+++++++.|+.
T Consensus 133 ~~~~~~~~~R~~gf~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~ 206 (276)
T 3jy6_A 133 LELSRTRQERYRGILAAAQDVDV-----LEVSESSYNHSEVHQRLTQLITQNDQKTVA-FALKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp STTCHHHHHHHHHHHTTCSEEEE-----EEECSSSCCHHHHHHHHHHHHHSSSSCEEE-EESSHHHHHHHSHHHHHSSSC
T ss_pred CCCCchHHHHHHHHHHHHHhCCc-----EEEeccccCCcHHHHHHHHHHhcCCCCcEE-EEeCcHHHHHHHHHHHHcCCC
Confidence 54 211 1124555666655542 122221 1 1134444444443 367774 456778888999999999986
Q ss_pred CC-CeEEEEeCc
Q 043468 160 EK-DYIWITTDA 170 (720)
Q Consensus 160 ~~-~~~~i~~~~ 170 (720)
-+ +...++.+.
T Consensus 207 vP~di~vig~d~ 218 (276)
T 3jy6_A 207 DNQTVTATGFAD 218 (276)
T ss_dssp CSSSEEEEEBCC
T ss_pred CCCcEEEEEECC
Confidence 43 444554443
No 150
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=94.93 E-value=0.087 Score=53.06 Aligned_cols=149 Identities=12% Similarity=0.097 Sum_probs=91.9
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
.+++++||-... ...+...++|+|......+. +.+-.+..++..-+..+++++...|.++++++...
T Consensus 117 ~~~vdGiIi~~~-------~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 183 (333)
T 3jvd_A 117 SIQAAGIIHVPV-------VGSIAPEGIPMVQLTRGELG------PGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVGE 183 (333)
T ss_dssp HHTCSEEEECCC-------TTCCC-CCSCEEEECC----------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEESC
T ss_pred hCCCCEEEEcch-------HHHHhhCCCCEEEECccCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 456777764222 34456779999987653322 22334667888888888999988899999999876
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC-CCeEEEEEcCHHHHHHHHHHHHHcCCCCC-C
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG-QCRVFVVHLSLELAVHLFEKANKMKMMEK-D 162 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~-~~~vvil~~~~~~~~~~l~~a~~~g~~~~-~ 162 (720)
... ....-.+.+++.+++.|+. ........+.++-...+.++.+. .+++|+ +++...+..+++++++.|+.-+ +
T Consensus 184 ~~~~~~~~R~~Gf~~al~~~g~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~d 260 (333)
T 3jvd_A 184 ESLSTTQERMRGISHAASIYGAE--VTFHFGHYSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHD 260 (333)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTT
T ss_pred CCCccHHHHHHHHHHHHHHCCCC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCc
Confidence 432 1122368899999999987 11111222221333444444333 377754 5677788899999999998633 4
Q ss_pred eEEEEeCc
Q 043468 163 YIWITTDA 170 (720)
Q Consensus 163 ~~~i~~~~ 170 (720)
...++-+.
T Consensus 261 isvig~D~ 268 (333)
T 3jvd_A 261 VVIGGYDD 268 (333)
T ss_dssp CEEEEESC
T ss_pred eEEEEECC
Confidence 44454443
No 151
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=94.91 E-value=0.024 Score=47.36 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=53.1
Q ss_pred HHhhheeeeecccCCCccCccccccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 043468 480 YNGFVVWLIERNHWPELTGSALHQTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTAR 553 (720)
Q Consensus 480 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~ 553 (720)
+.+.+.+.+++..+ ++....+.+++|++. .+.|+. |.+..+|++.++|+++++.+.+...+.+.+.+...
T Consensus 42 ~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 42 AGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp HHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666776432 222345788999988 455665 78999999999999999999999999999988653
No 152
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=94.66 E-value=0.052 Score=53.85 Aligned_cols=135 Identities=13% Similarity=0.227 Sum_probs=83.7
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccc----c--CCCCeEEEeecChHHHHHHHHHHHHh--
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWA----T--ERWPFLLQASQNQLAQMKAIAAIVQS-- 73 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~----~--~~~~~~fr~~p~~~~~~~~~~~~l~~-- 73 (720)
+|+ ++++++|++ ..+..+.+++. ...++|+|..+.+++.-. + ...+++.-+.-.. ....-++++++
T Consensus 64 ~l~-~~~~DlIia-i~t~aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~~~~--~~~~~l~l~~~l~ 137 (302)
T 3lkv_A 64 QFV-GENPDVLVG-IATPTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLS--PVEQHVELIKEIL 137 (302)
T ss_dssp HHH-TTCCSEEEE-ESHHHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCC--CHHHHHHHHHHHS
T ss_pred HHH-hcCCcEEEE-cCCHHHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEECCc--CHHHHHHHHHHhC
Confidence 456 578998986 33344444433 345899998876655422 1 1224554443221 13444566554
Q ss_pred CCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHH
Q 043468 74 WEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELA 146 (720)
Q Consensus 74 ~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~ 146 (720)
-+.++++++|+.+..+.....+.+++.+++.|++++..... ...+....++.+. .+.|++++..+....
T Consensus 138 P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~l~-~~~d~i~~~~d~~~~ 206 (302)
T 3lkv_A 138 PNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL---KSADVQSATQAIA-EKSDVIYALIDNTVA 206 (302)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS---SGGGHHHHHHHHH-TTCSEEEECSCHHHH
T ss_pred CCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecC---ChHHHHHHHHhcc-CCeeEEEEeCCcchh
Confidence 26799999998776544444788899999999988665332 2227777777765 578998887765433
No 153
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=94.60 E-value=0.047 Score=47.61 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=54.6
Q ss_pred HHHhhheeeeecccCCCccCccccccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 043468 479 IYNGFVVWLIERNHWPELTGSALHQTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTA 552 (720)
Q Consensus 479 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~ 552 (720)
++.+.+++.+++..+ +.....+.+++|+++ .+.|+. |.+..+|++.++++++++.+.+...+.+.+.++.
T Consensus 64 ~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 64 LAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555677776532 222335778999988 555665 7889999999999999999999999999999876
Q ss_pred cc
Q 043468 553 RG 554 (720)
Q Consensus 553 ~~ 554 (720)
..
T Consensus 140 ~~ 141 (155)
T 2a9h_A 140 RE 141 (155)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 154
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=94.32 E-value=0.12 Score=52.49 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=91.1
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+++|++||-...... ......+...++|+|......+. . +.+..+..++..-+..++++|...|.++++++...
T Consensus 120 ~~~vdgiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~--~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 193 (348)
T 3bil_A 120 SHGVDGIICVPNEEC-ANQLEDLQKQGMPVVLVDRELPG--D---STIPTATSNPQPGIAAAVELLAHNNALPIGYLSGP 193 (348)
T ss_dssp HTTCSCEEECCCGGG-HHHHHHHHHC-CCEEEESSCCSC--C----CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred hCCCCEEEEeCCCCC-hHHHHHHHhCCCCEEEEcccCCC--C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 467887765333222 23445566689999987643221 0 12234566777778888999888899999999765
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC-CCeEEEEEcCHHHHHHHHHHHHHcCCCC-CC
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG-QCRVFVVHLSLELAVHLFEKANKMKMME-KD 162 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~-~~~vvil~~~~~~~~~~l~~a~~~g~~~-~~ 162 (720)
... ....-.+.+++.+++.|++.... .....+..+-...++++.+. .+ + |++.+...+..+++++++.|+.- .+
T Consensus 194 ~~~~~~~~R~~Gf~~al~~~g~~~~~v-~~~~~~~~~~~~~~~~ll~~~~~-a-i~~~nD~~A~g~~~al~~~G~~vP~d 270 (348)
T 3bil_A 194 MDTSTGRERLEDFKAACANSKIGEQLV-FLGGYEQSVGFEGATKLLDQGAK-T-LFAGDSMMTIGVIEACHKAGLVIGKD 270 (348)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCCCCEE-ECCCSSHHHHHHHHHHHHHTTCS-E-EEESSHHHHHHHHHHHHHTTCCBTTT
T ss_pred CCCccHHHHHHHHHHHHHHcCcCccEE-EcCCCCHHHHHHHHHHHHcCCCC-E-EEEcChHHHHHHHHHHHHcCCCCCCC
Confidence 331 11222678889999998732111 11111111223344444333 35 4 44667777889999999999853 24
Q ss_pred eEEEEeCc
Q 043468 163 YIWITTDA 170 (720)
Q Consensus 163 ~~~i~~~~ 170 (720)
...++-+.
T Consensus 271 isvvG~D~ 278 (348)
T 3bil_A 271 VSVIGFDT 278 (348)
T ss_dssp BEEEEESC
T ss_pred eEEEEeCC
Confidence 44444443
No 155
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=94.17 E-value=0.14 Score=50.59 Aligned_cols=164 Identities=11% Similarity=0.039 Sum_probs=95.3
Q ss_pred cCCeEEEE-CCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHH-hCCCe-----E
Q 043468 6 SQKVEAIL-GPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQ-SWEWH-----Q 78 (720)
Q Consensus 6 ~~~v~aii-Gp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~-~~~~~-----~ 78 (720)
+++|++|| .|..+.........+...++|+|......+.......+.+..+..++..-++..++++. ..|.+ +
T Consensus 55 ~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~ 134 (306)
T 8abp_A 55 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKE 134 (306)
T ss_dssp HTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred HcCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccc
Confidence 46788775 34444444555667778899999877432222111111344566777777777777764 33433 8
Q ss_pred EEEEE-EcCC-CcccCcHHHHHHHHHHcCc---EEEEEEecCCCCcccHHHHHHHhhcC--CCeE-EEEEcCHHHHHHHH
Q 043468 79 VTVIY-EDID-SSATGILPHLSDALREAGA---EIIHVLALPHFPSSRLSEELEKLKGG--QCRV-FVVHLSLELAVHLF 150 (720)
Q Consensus 79 v~ii~-~~~~-~g~~~~~~~~~~~~~~~g~---~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~v-vil~~~~~~~~~~l 150 (720)
++++. .... .....-.+.+++.+++.|. +++.... ...+..+-...++++.+. +++. ++++++...+..++
T Consensus 135 i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~ 213 (306)
T 8abp_A 135 SAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT-KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 213 (306)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEEC-SSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHH
T ss_pred eEEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEeecc-CCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHH
Confidence 88886 3322 1112226788899999874 2333222 111211344455555444 4566 35555777888999
Q ss_pred HHHHHcCCCCCCeEEEEeCc
Q 043468 151 EKANKMKMMEKDYIWITTDA 170 (720)
Q Consensus 151 ~~a~~~g~~~~~~~~i~~~~ 170 (720)
+++++.|+...+...++.+.
T Consensus 214 ~al~~~g~~v~di~vvG~D~ 233 (306)
T 8abp_A 214 RATEGQGFKAADIIGIGING 233 (306)
T ss_dssp HHHHHTTCCGGGEEEEEESS
T ss_pred HHHHHcCCCCCceEEEEeCc
Confidence 99999998532445555444
No 156
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=94.10 E-value=0.06 Score=46.20 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=50.2
Q ss_pred hhheeeeecccCCCccCccccccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 043468 482 GFVVWLIERNHWPELTGSALHQTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTA 552 (720)
Q Consensus 482 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~ 552 (720)
+.+++.+++..+ +.....+.+++|+++ .+.|+- |.+..+|++.++|+++++.+.+...+.+.+.+..
T Consensus 23 a~~~~~~e~~~~----~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 23 SYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHTTSSCT----TCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHhcCCC----CcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566655332 223345778888888 566765 7899999999999999999999999999987754
No 157
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=93.75 E-value=0.16 Score=51.85 Aligned_cols=154 Identities=8% Similarity=0.015 Sum_probs=90.4
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
.++|++||-..... .......+...++|+|......+ . +.+-.+..++..-+..++++|...|.++++++...
T Consensus 126 ~~~vdGiIi~~~~~-~~~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~ 198 (366)
T 3h5t_A 126 NAAVDGVVIYSVAK-GDPHIDAIRARGLPAVIADQPAR---E---EGMPFIAPNNRKAIAPAAQALIDAGHRKIGILSIR 198 (366)
T ss_dssp TCCCSCEEEESCCT-TCHHHHHHHHHTCCEEEESSCCS---C---TTCCEEEECHHHHTHHHHHHHHHTTCCSEEEEEEC
T ss_pred hCCCCEEEEecCCC-ChHHHHHHHHCCCCEEEECCccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEecc
Confidence 56677665311122 22344555667999998754221 1 12334677888888889999988999999999842
Q ss_pred C------------------CCcccCcHHHHHHHHHHcCcEEEE--EEecCCCCcccHHHHHHHhh--cCCCeEEEEEcCH
Q 043468 86 I------------------DSSATGILPHLSDALREAGAEIIH--VLALPHFPSSRLSEELEKLK--GGQCRVFVVHLSL 143 (720)
Q Consensus 86 ~------------------~~g~~~~~~~~~~~~~~~g~~v~~--~~~~~~~~~~d~~~~l~~i~--~~~~~vvil~~~~ 143 (720)
. ......-.+.+++.+++.|+.+.. .......+..+-...+.++. ..++++|| +++.
T Consensus 199 ~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD 277 (366)
T 3h5t_A 199 LDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVL-CTVD 277 (366)
T ss_dssp CSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEE-ESSH
T ss_pred cccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEE-ECCc
Confidence 1 111111267889999999875321 11111111112223344442 23677744 5667
Q ss_pred HHHHHHHHHHHHcCCCCC-CeEEEE
Q 043468 144 ELAVHLFEKANKMKMMEK-DYIWIT 167 (720)
Q Consensus 144 ~~~~~~l~~a~~~g~~~~-~~~~i~ 167 (720)
..+..+++++++.|+.-+ +...++
T Consensus 278 ~~A~g~~~al~~~G~~vP~disvig 302 (366)
T 3h5t_A 278 ALAFGVLEYLKSVGKSAPADLSLTG 302 (366)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEE
Confidence 788899999999998633 344443
No 158
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=93.36 E-value=0.32 Score=49.22 Aligned_cols=144 Identities=10% Similarity=0.056 Sum_probs=85.5
Q ss_pred cCCeEEEE--CCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEE
Q 043468 6 SQKVEAIL--GPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIY 83 (720)
Q Consensus 6 ~~~v~aii--Gp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~ 83 (720)
.++|++|| +|.... ......+...++|+|...... ....+ .+..++..-+...++++...|.++++++.
T Consensus 116 ~~~vdGiIi~~~~~~~--~~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~ 186 (349)
T 1jye_A 116 AQRVSGLIINYPLDDQ--DAIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLA 186 (349)
T ss_dssp TTTCSCEEEESCCCHH--HHHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred HCCCCEEEEecCCCCh--hHHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 46677765 443322 223334456799999875421 11222 35567777777788888778999999998
Q ss_pred EcCCC-cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCCC
Q 043468 84 EDIDS-SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 84 ~~~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~~ 160 (720)
..... ....-.+.+++.+++.|+.+.... ....+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+.-
T Consensus 187 g~~~~~~~~~R~~Gf~~al~~~gi~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~v 264 (349)
T 1jye_A 187 GPLSSVSARLRLAGWHKYLTRNQIQPIAER-EGDWSAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRV 264 (349)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHTTCCCSEEE-ECCSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCB
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCCccccc-cCCCChHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCC
Confidence 65332 111225788899999997543221 1111111112233343322 577754 456677889999999999863
No 159
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=93.13 E-value=0.12 Score=43.94 Aligned_cols=51 Identities=10% Similarity=0.257 Sum_probs=43.8
Q ss_pred ccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 043468 503 QTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTAR 553 (720)
Q Consensus 503 ~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~ 553 (720)
.+.+++|+++ .+.|+- |.+..+|++.++|+++++.+.+...+.+.+.+...
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999988 566775 78999999999999999999999999999888643
No 160
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=92.66 E-value=0.048 Score=54.03 Aligned_cols=146 Identities=10% Similarity=0.063 Sum_probs=88.7
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
.++|++||-....... ....+...++|+|......+. . +.+..+..++..-++.++++|...|.++++++...
T Consensus 68 ~~~vdGiIi~~~~~~~--~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 140 (301)
T 3miz_A 68 SHRIDGVLYVTMYRRI--VDPESGDVSIPTVMINCRPQT---R--ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLN 140 (301)
T ss_dssp HTTCSEEEEEEEEEEE--CCCCCTTCCCCEEEEEEECSS---T--TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECC
T ss_pred hCCCCEEEEecCCccH--HHHHHHhCCCCEEEECCCCCC---C--CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 4667776532111111 334556678999877643221 1 02334677888888889999988999999999865
Q ss_pred CCC-cccCcHHHHHHHHHHcCcEEEEEEecC----CCCcc-cH-HHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHc
Q 043468 86 IDS-SATGILPHLSDALREAGAEIIHVLALP----HFPSS-RL-SEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKM 156 (720)
Q Consensus 86 ~~~-g~~~~~~~~~~~~~~~g~~v~~~~~~~----~~~~~-d~-~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~ 156 (720)
... ....-.+.+++.+++.|+.+....... ..+.. .+ ...+.++.+. ++++| ++.+...+..+++++++.
T Consensus 141 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~ 219 (301)
T 3miz_A 141 PILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAI-MSGNDEMAIQIYIAAMAL 219 (301)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEE-EESSHHHHHHHHHHHHTT
T ss_pred ccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEE-EECCHHHHHHHHHHHHHc
Confidence 442 111226788899999987542211111 11111 22 1444444433 57775 455667788999999999
Q ss_pred CCC
Q 043468 157 KMM 159 (720)
Q Consensus 157 g~~ 159 (720)
|+.
T Consensus 220 g~~ 222 (301)
T 3miz_A 220 GLR 222 (301)
T ss_dssp TCC
T ss_pred CCC
Confidence 985
No 161
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=92.18 E-value=0.68 Score=48.07 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=44.0
Q ss_pred eEEEecCcchHHHHHhcCcccEEEechhHHHHHHHhcCCCcEe-eCCeeecCc-eeeEecCC----CC-----ChHHHHH
Q 043468 571 IIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTV-AGPTYKVGG-LGFAFPKG----SP-----LLPSVIE 639 (720)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~-~~~~~~k~----s~-----~~~~in~ 639 (720)
++... ...+...+|.+|++|+++...+.......+....... ..+.....+ ..++++++ .| +.+.+++
T Consensus 187 ~~v~~-~~~~~~~aL~~G~vDa~~~~eP~~~~~~~~g~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~ 265 (417)
T 2g29_A 187 STIVV-PPAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVME 265 (417)
T ss_dssp EEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHHTSCEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHH
T ss_pred EEEEC-CHHHHHHHHHcCCCCEEEeCCCHHHHHHHcCCCEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHH
Confidence 44333 3468899999999999999887766655554221221 222222223 46677653 34 4445666
Q ss_pred HHhcccc
Q 043468 640 ALLKVSE 646 (720)
Q Consensus 640 ~i~~~~~ 646 (720)
+...+.+
T Consensus 266 A~~~~~~ 272 (417)
T 2g29_A 266 AQQWCDQ 272 (417)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 6666665
No 162
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=91.97 E-value=1.3 Score=43.53 Aligned_cols=141 Identities=15% Similarity=0.051 Sum_probs=80.7
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccC-CCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHh-CCCeEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKK-QIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQS-WEWHQVTVIY 83 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~-~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~-~~~~~v~ii~ 83 (720)
++++++||... .....++..++..+ ++|++......+ . +.+-.+......-+.....++.+ .+.++|++|.
T Consensus 61 ~~~vdgIi~~~-~~~~~~~~~~~~~~p~~p~v~id~~~~---~---~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~ 133 (296)
T 2hqb_A 61 DGGVNLIFGHG-HAFAEYFSTIHNQYPDVHFVSFNGEVK---G---ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIA 133 (296)
T ss_dssp HTTCCEEEECS-THHHHHHHTTTTSCTTSEEEEESCCCC---S---SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEE
T ss_pred HCCCCEEEEcC-HhHHHHHHHHHHHCCCCEEEEEecCcC---C---CCEEEEEechHHHHHHHHHHHHhhccCCeEEEEc
Confidence 57899998743 23334455555544 788887653211 1 23333444444333333333433 3568999997
Q ss_pred EcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCC--CcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468 84 EDIDSSATGILPHLSDALREAGAEIIHVLALPHF--PSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKM 158 (720)
Q Consensus 84 ~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~ 158 (720)
..... . ..+.+++.+++.|.. .....+... +...-....+++.+.++|+|+ +.....+..+++++++.|+
T Consensus 134 g~~~~--~-r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~D~~a~Gv~~a~~e~Gv 205 (296)
T 2hqb_A 134 AFPWQ--P-EVEGFVDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFY-PAGDGYHVPVVEAIKDQGD 205 (296)
T ss_dssp SCTTC--H-HHHHHHHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEE-CCCTTTHHHHHHHHHHHTC
T ss_pred CcCch--h-hHHHHHHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEE-ECCCCCCHHHHHHHHHcCC
Confidence 65433 2 378899999998875 322223221 111222345555556788754 5556667788899999883
No 163
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=91.53 E-value=0.63 Score=46.42 Aligned_cols=151 Identities=11% Similarity=0.076 Sum_probs=91.1
Q ss_pred cCCeEEEE-CCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHh-------CCCe
Q 043468 6 SQKVEAIL-GPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQS-------WEWH 77 (720)
Q Consensus 6 ~~~v~aii-Gp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~-------~~~~ 77 (720)
.+++++|| .|..+.........+...++|+|......+.. . +....+..++...++.+++++.. .|.+
T Consensus 57 ~~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~--~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~ 132 (330)
T 3uug_A 57 TKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS--G--DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPF 132 (330)
T ss_dssp HHTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC--T--TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCE
T ss_pred HcCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC--C--ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCce
Confidence 35677775 45544455666777888899999876543221 1 22245667888888888888766 6888
Q ss_pred EEEEEEEcCCC-cccCcHHHHHHHHHHc---C-cEEEEEEe----c--CCCCcccHHHHHHHhhc-----CCCeEEEEEc
Q 043468 78 QVTVIYEDIDS-SATGILPHLSDALREA---G-AEIIHVLA----L--PHFPSSRLSEELEKLKG-----GQCRVFVVHL 141 (720)
Q Consensus 78 ~v~ii~~~~~~-g~~~~~~~~~~~~~~~---g-~~v~~~~~----~--~~~~~~d~~~~l~~i~~-----~~~~vvil~~ 141 (720)
+++++...... ....-.+.+++.+++. | +++..... + ...+..+-...+.++.+ .++++| ++.
T Consensus 133 ~i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~ 211 (330)
T 3uug_A 133 NIELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAV-LSP 211 (330)
T ss_dssp EEEECBCCTTCHHHHHHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEE-ECS
T ss_pred EEEEEECCCCCchHHHHHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEE-EEC
Confidence 99999654332 1112257788888876 4 54432110 0 00111122223333322 467774 456
Q ss_pred CHHHHHHHHHHHHHcCCCCC
Q 043468 142 SLELAVHLFEKANKMKMMEK 161 (720)
Q Consensus 142 ~~~~~~~~l~~a~~~g~~~~ 161 (720)
....+..+++++++.|+..+
T Consensus 212 nd~~A~g~~~al~~~g~~vP 231 (330)
T 3uug_A 212 YDGLSIGIISSLKGVGYGTK 231 (330)
T ss_dssp SHHHHHHHHHHHHHTTCSSS
T ss_pred CCchHHHHHHHHHHcCCCCC
Confidence 67788899999999998643
No 164
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=91.22 E-value=0.62 Score=46.39 Aligned_cols=91 Identities=10% Similarity=0.087 Sum_probs=49.8
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeee
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGD 424 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 424 (720)
+..+++|+....+.+.| +.+-.-+-+.++.|.++++...+ +.-..++..|.+|++|+++.+
T Consensus 13 ~~~~l~ig~~~~~~~~p-----------------~~~A~~~G~~~~~Gl~V~~~~~~--~g~~~~~~al~~G~~D~~~~~ 73 (321)
T 2x7q_A 13 QLPTLKVAYIPEHFSTP-----------------LFFAQQQGYYKAHDLSIEFVKVP--EGSGRLINLLNSNEVDIAIGL 73 (321)
T ss_dssp -CCCEEEEECCSGGGHH-----------------HHHHHHTTHHHHTTCCEEEEECT--TCHHHHHHHHHTTSCSEEEEE
T ss_pred CCceEEEEeeCCccchH-----------------HHHHHHCCcHHHCCceEEEEECC--CCHHHHHHHHHcCCccEEecC
Confidence 34679999854333322 22222233556678776665433 222348999999999999866
Q ss_pred ee-eeccceeeee-e--cccccccc--eEEEEeccc
Q 043468 425 VA-IVARRCQYAD-F--THPYTESG--LVMIFPVQK 454 (720)
Q Consensus 425 ~~-~t~~r~~~~~-f--s~p~~~~~--~~~~v~~~~ 454 (720)
.. ....|.+..+ + .-++.... ..+++++..
T Consensus 74 ~~~~~~~~~~g~~~~~~v~~~~~~~~~~~i~v~~ds 109 (321)
T 2x7q_A 74 TEAFIADIAKGNENIHVLDTYVKSPLLWAVSTGSNR 109 (321)
T ss_dssp HHHHHHHHHTTCTTEEEEEEEECSCCEEEEEEESSC
T ss_pred cHHHHHHHHCCCCcEEEEEEecCCCcceEEEECCCC
Confidence 53 2333433322 2 23344444 357777653
No 165
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=91.16 E-value=0.19 Score=50.27 Aligned_cols=77 Identities=3% Similarity=-0.052 Sum_probs=49.6
Q ss_pred EEeHHHHHHHHHh----CCCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeec---------c---ceeeeeecccc
Q 043468 378 GFSIELFKALVEK----LPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVA---------R---RCQYADFTHPY 441 (720)
Q Consensus 378 G~~~dl~~~la~~----l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~---------~---r~~~~~fs~p~ 441 (720)
.+.-.+.+.+.+. .|.+ +...+.. ...+.++.+.+|++|+++....... + ..+.+.+..++
T Consensus 47 ~~~~~la~~l~~~~~~~~g~~--v~v~~~~-g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~~ 123 (327)
T 4ddd_A 47 PIGGSICRFIASDYGKDNKII--CSISSTT-GSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEKMLPMDNLRMLASL 123 (327)
T ss_dssp HHHHHHHHHHHHHHGGGTSEE--EEEECCC-CHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGGGTTSCCCTTEEEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCeE--EEEEecC-cHHHHHHHHHcCCCcEEEECcHHHHHHHhCcCcccccCCCcchhehhcc
Confidence 4455677777776 6755 4443422 3578889999999999986544221 0 12445555677
Q ss_pred cccceEEEEecccCCC
Q 043468 442 TESGLVMIFPVQKSGN 457 (720)
Q Consensus 442 ~~~~~~~~v~~~~~~~ 457 (720)
+.....+++++.....
T Consensus 124 ~~~~~~lvv~~ds~i~ 139 (327)
T 4ddd_A 124 HKEYLTIVVKKSSNIS 139 (327)
T ss_dssp EEEEEEEEEETTSSCC
T ss_pred CCccEEEEEECCCCCC
Confidence 7788888888775433
No 166
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=90.32 E-value=0.49 Score=46.86 Aligned_cols=55 Identities=11% Similarity=0.001 Sum_probs=46.2
Q ss_pred ccccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 043468 501 LHQTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGL 555 (720)
Q Consensus 501 ~~~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~ 555 (720)
...+..++|+++ .+.|+. |.+..+|++.++++++++++.+...+.+.+.++.+..
T Consensus 94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999988 566765 7888999999999999999999999999999876653
No 167
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=90.32 E-value=0.41 Score=36.41 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=40.4
Q ss_pred ccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhh
Q 043468 503 QTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSML 550 (720)
Q Consensus 503 ~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l 550 (720)
.+.+++|++. .+.|+. |.+..+|++.+.+.++++.+.+...+.+.+.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888 555665 78999999999999999999999998888764
No 168
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=90.20 E-value=2.4 Score=42.37 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=91.3
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcc---cccCCCCeEEEeecChHHHHHHHHHHHHhCCCeE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPN---WATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQ 78 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~---l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~ 78 (720)
++..+.++.+||............+.+.+.+++.|-..+.... .... +..+ .+..++..-+...++++...|.++
T Consensus 81 ~~a~~~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~-~~di-~V~~Dn~~Ggy~A~~~Li~~Ghk~ 158 (371)
T 3qi7_A 81 KLADDKEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQ-FVDV-NLGVSAEERGKVLAERSKEMGAKA 158 (371)
T ss_dssp GGGGCTTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHH-HSSE-EEECCHHHHHHHHHHHHHHTTCSC
T ss_pred HHhhcCCCeEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcc-cCce-EEEeChHHHHHHHHHHHHHCCCCE
Confidence 3456778888875443333345556666556655443332111 1111 1122 466666667777789999999999
Q ss_pred EEEEEEcCCCc---ccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHH-h--------hcC-CCeEEEEEcCHHH
Q 043468 79 VTVIYEDIDSS---ATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEK-L--------KGG-QCRVFVVHLSLEL 145 (720)
Q Consensus 79 v~ii~~~~~~g---~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~-i--------~~~-~~~vvil~~~~~~ 145 (720)
+++|....+.. ...-.+.+++.+++.|+.......... +.++-....++ + +.. .+++ |++++-..
T Consensus 159 Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~-t~e~G~~~a~~lL~~~~~~~~~~~~~~TA-IFatND~m 236 (371)
T 3qi7_A 159 FIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQVNTPNI-NTEEDKNKVKQFLNEDIEKQVKKYGKDIN-VFGVNEYM 236 (371)
T ss_dssp EEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEEEECCC-SSTHHHHHHHHHHHHHHHHHHHHHCSCCE-EEESSHHH
T ss_pred EEEEeccccccchhHHHHHHHHHHHHHHcCCCceeecCCCC-chHHHHHHHHHHHhccccchhhccCCCcE-EEECCHHH
Confidence 99998743211 111257799999999998765533222 21111222222 1 122 3354 77888899
Q ss_pred HHHHHHHHHHcCCC
Q 043468 146 AVHLFEKANKMKMM 159 (720)
Q Consensus 146 ~~~~l~~a~~~g~~ 159 (720)
+..+++++.+.|+.
T Consensus 237 AiG~ikal~e~Gi~ 250 (371)
T 3qi7_A 237 DEVILTKALELKYI 250 (371)
T ss_dssp HHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHcCCc
Confidence 99999999999973
No 169
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=89.45 E-value=1.8 Score=43.58 Aligned_cols=144 Identities=5% Similarity=-0.043 Sum_probs=84.1
Q ss_pred ccccCCeEEEECCCCChhhHHHHHhhccC-CCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHH--HhCCCeEE
Q 043468 3 LMDSQKVEAILGPQTSEETSSVAEIASKK-QIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIV--QSWEWHQV 79 (720)
Q Consensus 3 Li~~~~v~aiiGp~~s~~~~~~~~~~~~~-~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l--~~~~~~~v 79 (720)
|+ ++++++||++ +.....++.+++.++ ++|++......+ .+++-.+.... .++..++-++ ....-++|
T Consensus 82 l~-~~g~d~Ii~~-g~~~~~~~~~vA~~~Pdv~fv~id~~~~------~~Nv~sv~~~~-~eg~ylaG~~A~~~tk~~kI 152 (356)
T 3s99_A 82 IA-RAGNKLIFTT-SFGYMDPTVKVAKKFPDVKFEHATGYKT------ADNMSAYNARF-YEGRYVQGVIAAKMSKKGIA 152 (356)
T ss_dssp HH-HTTCSEEEEC-SGGGHHHHHHHHTTCTTSEEEEESCCCC------BTTEEEEEECH-HHHHHHHHHHHHHHCSSCEE
T ss_pred HH-HCCCCEEEEC-CHHHHHHHHHHHHHCCCCEEEEEecccc------CCcEEEEEech-hHHHHHHHHHHHHhcCCCEE
Confidence 45 4789999985 445566777888776 788886543221 13444444433 3444444432 11235799
Q ss_pred EEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCC--CcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcC
Q 043468 80 TVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHF--PSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMK 157 (720)
Q Consensus 80 ~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g 157 (720)
++|..............+++.+++.+.++.....+... +...-....+.+-+.++|+|+-..+.. ..+++|++.|
T Consensus 153 GfVgg~~~p~v~~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~G 229 (356)
T 3s99_A 153 GYIGSVPVPEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRG 229 (356)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTT
T ss_pred EEECCCccHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcC
Confidence 99986543221222677888888776554434444332 211223345555567999887766553 6789999887
Q ss_pred C
Q 043468 158 M 158 (720)
Q Consensus 158 ~ 158 (720)
.
T Consensus 230 v 230 (356)
T 3s99_A 230 I 230 (356)
T ss_dssp C
T ss_pred C
Confidence 5
No 170
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=89.43 E-value=0.052 Score=48.16 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=43.6
Q ss_pred cccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 043468 502 HQTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTA 552 (720)
Q Consensus 502 ~~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~ 552 (720)
..+.+++|+++ .+.|+. |.+..+|++.++|+++++++.+...+.+.+.+..
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888 566665 7899999999999999999999999999988764
No 171
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=88.79 E-value=0.39 Score=37.96 Aligned_cols=53 Identities=9% Similarity=0.262 Sum_probs=44.2
Q ss_pred ccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 043468 503 QTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGL 555 (720)
Q Consensus 503 ~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~ 555 (720)
.+.+++|++. .+.|+. |.+..+|++.+++.++++.+.+...+.+.+.++.+..
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3677888888 556764 7899999999999999999999999999988765543
No 172
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=88.51 E-value=0.99 Score=42.12 Aligned_cols=84 Identities=6% Similarity=-0.013 Sum_probs=55.3
Q ss_pred HHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCC--------cccHHHHHHHhhcC--C
Q 043468 64 MKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFP--------SSRLSEELEKLKGG--Q 133 (720)
Q Consensus 64 ~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~--------~~d~~~~l~~i~~~--~ 133 (720)
..++++.++..|.+||+++.. +. ....+.+++.+++.|+++.......... ...+...++++.+. +
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt~---~~-~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 171 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGTP---YI-KERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLK 171 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEES---SC-HHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHcCCCeEEEEeC---Cc-hHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCC
Confidence 677777777788899999953 21 2214577788999999987765544321 11455666666666 8
Q ss_pred CeEEEEEcCHHHHHHHHH
Q 043468 134 CRVFVVHLSLELAVHLFE 151 (720)
Q Consensus 134 ~~vvil~~~~~~~~~~l~ 151 (720)
+|+||+.|.+-....+..
T Consensus 172 adaIvLgCT~l~~~~~~~ 189 (223)
T 2dgd_A 172 ADAVYIACTALSTYEAVQ 189 (223)
T ss_dssp SSEEEECCTTSCCTTHHH
T ss_pred CCEEEEeCCcccHHHHHH
Confidence 899999886654433333
No 173
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=87.45 E-value=0.71 Score=37.71 Aligned_cols=50 Identities=10% Similarity=0.260 Sum_probs=42.1
Q ss_pred ccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 043468 503 QTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTA 552 (720)
Q Consensus 503 ~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~ 552 (720)
.+.+++|+++ .+.|+. |.+..+|++.++|.++++.+.+...+.+.+.++.
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888 556665 7889999999999999999999999999987754
No 174
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=87.15 E-value=3.1 Score=42.71 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=84.8
Q ss_pred HhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHh-CCCeEEEEEEEcCCCcccCcHHHHHHHHHHc
Q 043468 26 EIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQS-WEWHQVTVIYEDIDSSATGILPHLSDALREA 104 (720)
Q Consensus 26 ~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~-~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~ 104 (720)
+-+...++-+|.|+.. + ++| -+.....+.-.++.++ ..-++|+|+|.+..+..+.+++.+.+.+.+.
T Consensus 226 ~kl~~Ldi~~I~P~HG-p---------i~r--~~~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~ 293 (410)
T 4dik_A 226 EKLSSLKIKALLPGHG-L---------IWK--KDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEK 293 (410)
T ss_dssp HHHHTSCCSEEEESSS-C---------BBS--SCHHHHHHHHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCEEecCCc-c---------hhh--cCHHHHHHHHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhc
Confidence 3444556667766542 2 222 1222233333333333 2345899999877666566789999999999
Q ss_pred CcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCH------HHHHHHHHHHHHcCCCCCCeEEEEeCccccc
Q 043468 105 GAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSL------ELAVHLFEKANKMKMMEKDYIWITTDAFTSL 174 (720)
Q Consensus 105 g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~------~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~ 174 (720)
|++++.......... +.+..+..+. +++.|++.++. .....++.........++....+++-+|...
T Consensus 294 Gv~~~~~~~~d~~~~-~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~~~l~~l~~~~~~~K~~~~FGSyGWsg~ 366 (410)
T 4dik_A 294 GFTPVVYKFSDEERP-AISEILKDIP--DSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVHGWAPS 366 (410)
T ss_dssp TCEEEEEEECSSCCC-CHHHHHHHST--TCSEEEEEECCTTSSSCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCT
T ss_pred CCceEEEEeccCCCC-CHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHHHHHHHHHhcccCCCEEEEEECCCCCcH
Confidence 998776555544444 7888888775 56777775532 4566677777777777766677777777653
No 175
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=86.99 E-value=0.79 Score=44.80 Aligned_cols=54 Identities=9% Similarity=-0.031 Sum_probs=45.4
Q ss_pred ccccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 043468 501 LHQTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARG 554 (720)
Q Consensus 501 ~~~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~ 554 (720)
...+.+++|+++ .+.|+. |.+..+|++.+++.++++++.+...+.+.+.+..+.
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445778899888 566765 788899999999999999999999999999887653
No 176
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=86.73 E-value=2.8 Score=42.33 Aligned_cols=53 Identities=13% Similarity=-0.020 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCCccceEEecCC--CCHHHHHHHHHhCCccEEeeeeeeeccceee
Q 043468 382 ELFKALVEKLPFYLPYNFIPFN--GSYDDLVKQLYLNNFAGVVGDVAIVARRCQY 434 (720)
Q Consensus 382 dl~~~la~~l~~~~~~~~~~~~--~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~ 434 (720)
.+.+.+.++.|-++++...+.. |+..++++.+++|.+|+++.+......+...
T Consensus 54 ~fa~~v~e~t~G~v~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~ 108 (361)
T 2zzv_A 54 KFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPV 108 (361)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGGTTTCGG
T ss_pred HHHHHHHHhcCCeEEEEEeCCCcccCHHHHHHHHHcCceeEEEeccccccccCcH
Confidence 4778888888877777776632 5788999999999999998666555544433
No 177
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=85.33 E-value=1 Score=41.98 Aligned_cols=68 Identities=9% Similarity=0.245 Sum_probs=49.8
Q ss_pred HhhheeeeecccCCCccCccccccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 043468 481 NGFVVWLIERNHWPELTGSALHQTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTA 552 (720)
Q Consensus 481 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~ 552 (720)
.+.+.+.+++..+ +....++.+++|+++ .+.|+. |.+..+|++.++++++++.+.+...+.+.+.+..
T Consensus 147 ~~~~~~~~e~~~~----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 147 GAFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHTTSSST----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCc----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554221 122345778888888 455664 7889999999999999999999999999988764
No 178
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=85.10 E-value=0.94 Score=43.93 Aligned_cols=67 Identities=7% Similarity=-0.103 Sum_probs=38.6
Q ss_pred CcchHHHHHhcCcccEEEech-hHHHHHHHhcCCCcEeeCCe-------e-ecCc-eeeEecCC-CC-ChHHHHHHHhcc
Q 043468 577 CLGDYASDLKSRKTGAVFLEV-AEAKIFLAKYCKGFTVAGPT-------Y-KVGG-LGFAFPKG-SP-LLPSVIEALLKV 644 (720)
Q Consensus 577 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-------~-~~~~-~~~~~~k~-s~-~~~~in~~i~~~ 644 (720)
...+...++.+|++|+++... .... +.+.. +..+.+. . ...+ ..++++++ .| +.+.|++++.+.
T Consensus 132 ~~~~~~~al~~G~vDa~~~~~~~~~~-~~~~g---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a 207 (280)
T 1zbm_A 132 PFDRIIQAVLDEEVDAGLLIHEGQIT-YADYG---LKCVLDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRES 207 (280)
T ss_dssp CGGGHHHHHHTTSSSEEEECSGGGGT-GGGGT---CEEEEEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCEEEEechHHhH-HHhcC---CeEeccHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHH
Confidence 346788999999999998653 3332 22211 2222110 0 1112 35788887 55 777777777665
Q ss_pred ccc
Q 043468 645 SES 647 (720)
Q Consensus 645 ~~~ 647 (720)
.+.
T Consensus 208 ~~~ 210 (280)
T 1zbm_A 208 IAF 210 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 179
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=84.19 E-value=5.1 Score=40.46 Aligned_cols=48 Identities=8% Similarity=-0.211 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCccceEEecCC--CCHHHHHHHHHhCCccEEeeeeeeec
Q 043468 382 ELFKALVEKLPFYLPYNFIPFN--GSYDDLVKQLYLNNFAGVVGDVAIVA 429 (720)
Q Consensus 382 dl~~~la~~l~~~~~~~~~~~~--~~~~~~~~~l~~g~~Di~~~~~~~t~ 429 (720)
.+.+.+.++.|-++++...+.. |+...+++.++.|.+|++..+.....
T Consensus 53 ~fa~~v~e~s~G~v~i~~~~~g~Lg~~~~~~eav~~G~iD~~~~~~~~~~ 102 (365)
T 2hzl_A 53 VLSKMLSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYW 102 (365)
T ss_dssp HHHHHHHHHTTTSSEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGGGT
T ss_pred HHHHHHHHhcCCeEEEEEecCCcccCHHHHHHHHHcCccceeecchhhhc
Confidence 4777888888877777777632 46788999999999999975544333
No 180
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=84.02 E-value=1.4 Score=43.42 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=45.1
Q ss_pred ccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 043468 503 QTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARG 554 (720)
Q Consensus 503 ~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~ 554 (720)
.+.+++|+++ .+.|+. |.+..+|++.++++++++++.+.-.+.+.+.++.+.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999988 566765 788999999999999999999999999999887654
No 181
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=83.26 E-value=8.1 Score=37.72 Aligned_cols=49 Identities=4% Similarity=-0.173 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCccceEEecCC--CCHHHHHHHHHhCCccEEeeeeeeec
Q 043468 381 IELFKALVEKLPFYLPYNFIPFN--GSYDDLVKQLYLNNFAGVVGDVAIVA 429 (720)
Q Consensus 381 ~dl~~~la~~l~~~~~~~~~~~~--~~~~~~~~~l~~g~~Di~~~~~~~t~ 429 (720)
-.+.+.+.++.|-++++...+.. |+-..+++.++.|.+|++..+.....
T Consensus 21 ~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~ 71 (301)
T 2pfy_A 21 RQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSALG 71 (301)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGGT
T ss_pred HHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhhhh
Confidence 35778888888888888777632 45578999999999999976544433
No 182
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=82.12 E-value=15 Score=33.06 Aligned_cols=131 Identities=11% Similarity=0.092 Sum_probs=81.6
Q ss_pred CeEEEECCCCChhhHHHHHhhccCCC-cEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcC
Q 043468 8 KVEAILGPQTSEETSSVAEIASKKQI-PVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDI 86 (720)
Q Consensus 8 ~v~aiiGp~~s~~~~~~~~~~~~~~i-p~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~ 86 (720)
.+..+.|.. +.+...+.-+ ..+. .+||-+++...+.+.-.--+..+..+.....+++...-++. ++++++...+
T Consensus 30 ~i~i~~~~l--~~~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~--~kIavvg~~~ 104 (196)
T 2q5c_A 30 IPITKTASL--TRASKIAFGL-QDEVDAIISRGATSDYIKKSVSIPSISIKVTRFDTMRAVYNAKRFG--NELALIAYKH 104 (196)
T ss_dssp EEEEEECCH--HHHHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHHHGGGC--SEEEEEEESS
T ss_pred ceEEEECCH--HHHHHHHHHh-cCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhHHHHHHHHHHhhC--CcEEEEeCcc
Confidence 455555543 2233333333 3443 57777777666654333456778888887777777765543 4899998766
Q ss_pred CCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468 87 DSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKM 158 (720)
Q Consensus 87 ~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~ 158 (720)
.. .+ .+.+.+.+ |.++... .+. +.++..+.++++++.++++|+..... .+.|++.|+
T Consensus 105 ~~--~~-~~~~~~ll---~~~i~~~-~~~--~~~e~~~~i~~l~~~G~~vvVG~~~~------~~~A~~~Gl 161 (196)
T 2q5c_A 105 SI--VD-KHEIEAML---GVKIKEF-LFS--SEDEITTLISKVKTENIKIVVSGKTV------TDEAIKQGL 161 (196)
T ss_dssp CS--SC-HHHHHHHH---TCEEEEE-EEC--SGGGHHHHHHHHHHTTCCEEEECHHH------HHHHHHTTC
T ss_pred hh--hH-HHHHHHHh---CCceEEE-EeC--CHHHHHHHHHHHHHCCCeEEECCHHH------HHHHHHcCC
Confidence 54 33 55555554 5554432 222 22289999999999999997765433 455788998
No 183
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=81.48 E-value=1.4 Score=37.96 Aligned_cols=48 Identities=10% Similarity=0.281 Sum_probs=39.6
Q ss_pred ccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhh
Q 043468 503 QTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSML 550 (720)
Q Consensus 503 ~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l 550 (720)
.+.+++|+++ .+.|+. |.+..+|++.++|.++++.+.+...+.+.+.+
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~ 105 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNV 105 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888 555664 78999999999999999999998888887644
No 184
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=81.24 E-value=21 Score=32.77 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=56.9
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEee
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVG 423 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 423 (720)
..++|+||+.. .+ ...+...++..+.++. +.++++... +...++++|.+|++|+++.
T Consensus 17 ~~g~l~Ig~~~--~~----------------~~~~l~~~l~~f~~~~P~i~l~~~~~----~~~~~~~~l~~g~~Dl~i~ 74 (241)
T 3oxn_A 17 CDQTFTIATTD--YA----------------MQTILPFALPRIYQEAPNVSFNFLPL----QHDRLSDQLTYEGADLAIC 74 (241)
T ss_dssp CCCEEEEEECS--HH----------------HHHTHHHHHHHHHHHCTTCEEEEEEC----CGGGHHHHHHTSCCSEEEE
T ss_pred CCceEEEEech--HH----------------HHHHHHHHHHHHHHHCCCCEEEEEEC----CcccHHHHHHcCCCCEEEe
Confidence 45789999932 11 1245677888888876 556544432 3478999999999999986
Q ss_pred eeeeeccceeeeeecccccccceEEEEeccc
Q 043468 424 DVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 424 ~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.... ....+. +.++....+++++++..
T Consensus 75 ~~~~---~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 75 RPTG---PVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp CCSS---CCTTEE-EEEEECCCEEEEEETTS
T ss_pred cCCC---CCccce-eEEeecccEEEEEeCCC
Confidence 4332 222333 46888899999998774
No 185
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=80.78 E-value=9.8 Score=37.13 Aligned_cols=49 Identities=8% Similarity=-0.182 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCccceEEecCC--CCHHHHHHHHHhCCccEEeeeeeeecc
Q 043468 382 ELFKALVEKLPFYLPYNFIPFN--GSYDDLVKQLYLNNFAGVVGDVAIVAR 430 (720)
Q Consensus 382 dl~~~la~~l~~~~~~~~~~~~--~~~~~~~~~l~~g~~Di~~~~~~~t~~ 430 (720)
.+.+.+.++.|-++++...+.. |+-..+++++++|.+|++..+......
T Consensus 21 ~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~~~~ 71 (301)
T 2pfz_A 21 QFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFAN 71 (301)
T ss_dssp HHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGGTT
T ss_pred HHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhhccc
Confidence 5677788888877778776632 456789999999999999765544333
No 186
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=80.65 E-value=4.2 Score=42.15 Aligned_cols=76 Identities=9% Similarity=0.020 Sum_probs=42.5
Q ss_pred CeEEEecCcchHHHHHhcCcccEEEechhHHHHHHHhcCCCcE-eeCCeeecCc-eeeEecCC----CC-----ChHHHH
Q 043468 570 AIIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFT-VAGPTYKVGG-LGFAFPKG----SP-----LLPSVI 638 (720)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~-~~~~~~k~----s~-----~~~~in 638 (720)
+++... ...+...+|.+|++|+++...+.......+...... ..++.....+ ..++++++ .| +...+.
T Consensus 194 V~~v~~-~~~~~~~aL~~G~iDa~~~~eP~~~~a~~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~ 272 (429)
T 2i49_A 194 IDLLAV-PPAETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIM 272 (429)
T ss_dssp SEEEEC-CHHHHHHHHHHTCCCEEEEETTHHHHHHHTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHH
T ss_pred EEEEEC-ChHHHHHHHHcCCccEEEeccchHHHHHHCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHH
Confidence 344433 357888999999999999988877655554422111 1122112122 35666643 34 444555
Q ss_pred HHHhcccc
Q 043468 639 EALLKVSE 646 (720)
Q Consensus 639 ~~i~~~~~ 646 (720)
++...+.+
T Consensus 273 ~A~~~~~~ 280 (429)
T 2i49_A 273 EAQQWIDD 280 (429)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHhC
Confidence 55555554
No 187
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=79.97 E-value=4.3 Score=39.05 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCC--------cccHHHHHHHhhcCCCe
Q 043468 64 MKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFP--------SSRLSEELEKLKGGQCR 135 (720)
Q Consensus 64 ~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~--------~~d~~~~l~~i~~~~~~ 135 (720)
..++++.++..|.+||+|+.... ....+.+++.+++.|+++.......... ...+...++++...++|
T Consensus 134 ~~A~~~al~~~g~~rvgvltp~~----~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gad 209 (273)
T 2xed_A 134 AGALVEGLRALDAQRVALVTPYM----RPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVD 209 (273)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSC----HHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCS
T ss_pred HHHHHHHHHHcCCCeEEEEcCCh----hhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCC
Confidence 45666666777889999995322 2214588899999999987766543321 11466677777667899
Q ss_pred EEEEE-cCHHHHH
Q 043468 136 VFVVH-LSLELAV 147 (720)
Q Consensus 136 vvil~-~~~~~~~ 147 (720)
+||+. |..-...
T Consensus 210 aIvLg~CT~l~~~ 222 (273)
T 2xed_A 210 ALVISCAVQMPSL 222 (273)
T ss_dssp EEEEESSSSSCCT
T ss_pred EEEEcCCCCcchH
Confidence 99999 8654443
No 188
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=79.96 E-value=13 Score=28.69 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=64.4
Q ss_pred EEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC
Q 043468 53 LLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG 132 (720)
Q Consensus 53 ~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~ 132 (720)
+|-+..++......++.-++..|. ++.++|+|.+. .. ...-.+.+++.|..|-..+ +..||...+.+|-..
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqde--kr-rrerleefekqgvdvrtve-----dkedfrenireiwer 74 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDE--KR-RRERLEEFEKQGVDVRTVE-----DKEDFRENIREIWER 74 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCH--HH-HHHHHHHHHTTTCEEEECC-----SHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchH--HH-HHHHHHHHHHcCCceeeec-----cHHHHHHHHHHHHHh
Confidence 455556777777777777888775 77888887663 11 2333445667887654331 222888888777433
Q ss_pred --CCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 133 --QCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 133 --~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
..|++++.. +..-...|+..|++.|.
T Consensus 75 ypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 75 YPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp CTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 456655543 67788999999999997
No 189
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=79.91 E-value=25 Score=32.66 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCC-ccEEeeeeeeeccc---eeeee--ecccccccceEEEEeccc
Q 043468 381 IELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNN-FAGVVGDVAIVARR---CQYAD--FTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 381 ~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~r---~~~~~--fs~p~~~~~~~~~v~~~~ 454 (720)
-++++.+.++.|.++++..- +-..++.++.+|. +|+.++.-.-..++ ...+. -..++....+++++++.+
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~~----~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~~~~~~ 97 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSFA----SSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKAS 97 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEEE----CHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEEEESSC
T ss_pred HHHHHHHHhccCCeEEEEEC----CHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEEEeCCC
Confidence 46778888877877665442 3467888888887 99997642211111 12221 124777888999998874
No 190
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=79.18 E-value=10 Score=34.36 Aligned_cols=69 Identities=13% Similarity=0.004 Sum_probs=46.6
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+..+++..+.++. +.++++. . ++...+..+|.+|++|+++....... ..+. +.++....+++++++..
T Consensus 21 ~~l~~~l~~f~~~~P~i~i~i~--~--~~~~~~~~~l~~g~~Di~i~~~~~~~---~~~~-~~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 21 DWLMPAMGEFRPMWPQVELDIV--S--GFQADPVGLLLQHRADLAIVSEAEKQ---NGIS-FQPLFAYEMVGICAPDH 90 (222)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEE--C--CCCSCTHHHHHTTSCSEEEESCCCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred HHHHHHHHHHHHHCCCcEEEEe--c--CCHHHHHHHHHcCCcCEEEecCCCCc---CCeE-EEEeecCcEEEEecCCC
Confidence 45567888888776 4454443 3 23466899999999999986433322 2233 46888888999998774
No 191
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=78.27 E-value=9.4 Score=36.13 Aligned_cols=70 Identities=11% Similarity=-0.004 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCC-ccEEeeeeeeeccc---eeeee--ecccccccceEEEEeccc
Q 043468 381 IELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNN-FAGVVGDVAIVARR---CQYAD--FTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 381 ~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~r---~~~~~--fs~p~~~~~~~~~v~~~~ 454 (720)
-++++.+.++.|.++++..- +-..++.++.+|. +|+.+++-.-..++ ...+. -..++....+++++++.+
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~~----~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~~~~~~ 113 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSYA----ASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLVAPASS 113 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEEE----CHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEEEETTC
T ss_pred HHHHHHHHHHhCCeEEEEEC----ChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEEEECCC
Confidence 46788888888877666542 3467888888886 99998642111111 11221 124667778999998875
No 192
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=77.83 E-value=6.9 Score=39.56 Aligned_cols=99 Identities=15% Similarity=0.086 Sum_probs=65.1
Q ss_pred CeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCc-ccHHHHHHHh
Q 043468 51 PFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPS-SRLSEELEKL 129 (720)
Q Consensus 51 ~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~d~~~~l~~i 129 (720)
|+-+.+.+... ..+.++++.+| +++.|+++.......++.+.+.+.+++.|+++.....+.+..+ ++....++.+
T Consensus 19 p~~i~~G~g~~---~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~ 94 (371)
T 1o2d_A 19 PTDVFFGEKIL---EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERY 94 (371)
T ss_dssp CCEEEESTTHH---HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH
Confidence 44455555432 34556667777 8999998864433344579999999999987654443433322 2777888888
Q ss_pred hcCCCeEEEEEc--CHHHHHHHHHHH
Q 043468 130 KGGQCRVFVVHL--SLELAVHLFEKA 153 (720)
Q Consensus 130 ~~~~~~vvil~~--~~~~~~~~l~~a 153 (720)
++.++|+||-.+ +.-|+..++...
T Consensus 95 ~~~~~d~IIavGGGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 95 RNDSFDFVVGLGGGSPMDFAKAVAVL 120 (371)
T ss_dssp TTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeCChHHHHHHHHHHHH
Confidence 888999988654 445666666554
No 193
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=77.47 E-value=35 Score=30.88 Aligned_cols=69 Identities=4% Similarity=-0.091 Sum_probs=47.9
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+..+++..+.++. +.+ +.... ++...+..+|.+|++|+++....... ..+. +.++....+++++++..
T Consensus 24 ~~l~~~l~~~~~~~P~v~--i~~~~--~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 24 YLLPRVFPIWKKELAGLE--IHVSE--MQTSRCLASLLSGEIDMAIIASKAET---EGLE-DDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp HHHHHHHHHHHHHSTTEE--EEEEE--CCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred hhhHHHHHHHHHHCCCcE--EEEEe--CCHHHHHHHHHcCCCCEEEEcCCCCC---CCeE-EEEecccCEEEEEcCCC
Confidence 35667888888776 444 43333 34688999999999999986544332 2232 46888889999998764
No 194
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=76.87 E-value=3.7 Score=44.46 Aligned_cols=43 Identities=5% Similarity=-0.014 Sum_probs=34.5
Q ss_pred ccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhh
Q 043468 503 QTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTAN 545 (720)
Q Consensus 503 ~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~ 545 (720)
.+.+++|+++ .+.|+. |.+..+|++.++|.++++.+.+...+.
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999888 555664 678889999999999998877776665
No 195
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=76.79 E-value=1.9 Score=43.51 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=50.9
Q ss_pred HHHhhheeeeecccCCCccCccccccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 043468 479 IYNGFVVWLIERNHWPELTGSALHQTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTA 552 (720)
Q Consensus 479 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~ 552 (720)
++.+++.+.+++..+++ ....+..++|+++ .+.|+. |.+..+|++.++++++++++.+...+.+.+.+..
T Consensus 141 ~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 141 FAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp HHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355566666543222 1234678889888 455664 7889999999999999999999999999887754
No 196
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=76.18 E-value=4.2 Score=41.37 Aligned_cols=89 Identities=11% Similarity=0.140 Sum_probs=62.6
Q ss_pred HHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCc-ccHHHHHHHhhcCCCeEEEEEc--
Q 043468 65 KAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPS-SRLSEELEKLKGGQCRVFVVHL-- 141 (720)
Q Consensus 65 ~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~d~~~~l~~i~~~~~~vvil~~-- 141 (720)
..+.++++.+|.+++.|+++..- ...++.+.+.+.+++.|+++.....+.+..+ ++....++.+++.++|+||-.+
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~-~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 98 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFM-NKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGG 98 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHH-HHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHHcCCCEEEEEECCch-hhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCc
Confidence 45667778889999999988653 2344578999999999998755444433332 2677778888888999987655
Q ss_pred CHHHHHHHHHHHH
Q 043468 142 SLELAVHLFEKAN 154 (720)
Q Consensus 142 ~~~~~~~~l~~a~ 154 (720)
+.-|+..++....
T Consensus 99 sv~D~aK~ia~~~ 111 (383)
T 3ox4_A 99 SPHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456666666554
No 197
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=76.05 E-value=9.4 Score=38.85 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=59.5
Q ss_pred HHHHHHHhCCCeEEEEEEEcCCCccc--CcHHHHHHHHHHcCcEEEEEEecCCCCc-ccHHHHHHHhhcCCCeEEEEEc-
Q 043468 66 AIAAIVQSWEWHQVTVIYEDIDSSAT--GILPHLSDALREAGAEIIHVLALPHFPS-SRLSEELEKLKGGQCRVFVVHL- 141 (720)
Q Consensus 66 ~~~~~l~~~~~~~v~ii~~~~~~g~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~d~~~~l~~i~~~~~~vvil~~- 141 (720)
.+.++++.+|.+++.|+++.... .. ++.+.+.+.+++.|+++.....+.+... +.....++.+++.++|+||-.+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~-~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 101 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLR-AIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG 101 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC---CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHcCCCEEEEEECcchh-hccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45666777888999999776543 23 4589999999999988744333333222 2677788888888999988554
Q ss_pred -CHHHHHHHHHHH
Q 043468 142 -SLELAVHLFEKA 153 (720)
Q Consensus 142 -~~~~~~~~l~~a 153 (720)
+.-|+..++...
T Consensus 102 Gsv~D~aK~iA~~ 114 (387)
T 3bfj_A 102 GSPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHH
Confidence 456666666654
No 198
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=75.81 E-value=31 Score=31.18 Aligned_cols=69 Identities=12% Similarity=0.021 Sum_probs=47.5
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+...++..+.++. +.+ +.... ++...++++|.+|++|+++..... ....+.+ .|+....+++++++..
T Consensus 21 ~~lp~~l~~f~~~~P~v~--l~l~~--~~~~~l~~~L~~g~iDl~i~~~~~---~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 21 YFMPPLMEALAQRAPHIQ--ISTLR--PNAGNLKEDMESGAVDLALGLLPE---LQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp HHHHHHHHHHHHHCTTCE--EEEEC--CCTTTHHHHHHHTSSCEEEECCTT---CCTTEEE-EEEEEECEEEEEETTC
T ss_pred HHHHHHHHHHHHHCCCCE--EEEEe--CCcccHHHHHhCCCceEEEecCCC---CCcceeE-EEeeeccEEEEEcCCC
Confidence 46677888888876 455 44333 234779999999999999853221 1223433 5888999999998775
No 199
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=75.57 E-value=6.3 Score=40.48 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=58.4
Q ss_pred HHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCc-ccHHHHHHHhhcCCCeEEEEEc--C
Q 043468 66 AIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPS-SRLSEELEKLKGGQCRVFVVHL--S 142 (720)
Q Consensus 66 ~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~d~~~~l~~i~~~~~~vvil~~--~ 142 (720)
.+.++++.+|.+++.|++++......++.+.+.+.+++.|+++.......+..+ +.....++.+++.++|+||-.+ +
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 112 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS 112 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChh
Confidence 456667778889999998744332234578999999999988653222222221 2677778888888999988554 4
Q ss_pred HHHHHHHHHHH
Q 043468 143 LELAVHLFEKA 153 (720)
Q Consensus 143 ~~~~~~~l~~a 153 (720)
.-|+..++...
T Consensus 113 viD~AK~iA~~ 123 (407)
T 1vlj_A 113 VVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666666554
No 200
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=75.19 E-value=16 Score=30.60 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=59.0
Q ss_pred eEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC----HHHHHHHHHH
Q 043468 77 HQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS----LELAVHLFEK 152 (720)
Q Consensus 77 ~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~----~~~~~~~l~~ 152 (720)
.+|.+.....+...-+ ..-+...++..|++|.+--... ..+..++.+++.++|+|.+.+. ......++++
T Consensus 4 ~~vvla~~~~d~HdiG-~~~v~~~l~~~G~~Vi~lG~~~-----p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~ 77 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVG-NKILDHAFTNAGFNVVNIGVLS-----PQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQK 77 (137)
T ss_dssp CEEEEEEETTCCCCHH-HHHHHHHHHHTTCEEEEEEEEE-----CHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHH
T ss_pred CEEEEEeCCCchhHHH-HHHHHHHHHHCCCEEEECCCCC-----CHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHH
Confidence 3555555555554455 7888899999999998664421 5667788888889999998763 2345667888
Q ss_pred HHHcCCCCCCeEEEEeCc
Q 043468 153 ANKMKMMEKDYIWITTDA 170 (720)
Q Consensus 153 a~~~g~~~~~~~~i~~~~ 170 (720)
+++.|... -.+|++...
T Consensus 78 l~~~g~~~-i~v~vGG~~ 94 (137)
T 1ccw_A 78 CDEAGLEG-ILLYVGGNI 94 (137)
T ss_dssp HHHTTCTT-CEEEEEESC
T ss_pred HHhcCCCC-CEEEEECCC
Confidence 88887642 345555543
No 201
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=74.37 E-value=4.4 Score=37.71 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEE
Q 043468 65 KAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEII 109 (720)
Q Consensus 65 ~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~ 109 (720)
++.++.+...+.++|+++.....- . ...+++.+++.|+++.
T Consensus 104 ~a~~~~~~~~~~~rigvlaT~~T~---~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 104 DAVAEEILKRGVRKVLLLGTKTTM---T-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp HHHHHHHHHTTCCEEEEESSTTTT---S-CHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEeCHHHH---h-hhHHHHHHHHCCCEEE
Confidence 445555555567899999754332 2 3567788888898864
No 202
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=74.16 E-value=3.6 Score=40.43 Aligned_cols=69 Identities=6% Similarity=-0.018 Sum_probs=40.9
Q ss_pred HHHHHHHh-CCCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeec-c------------ceeeeeecccccccceEE
Q 043468 383 LFKALVEK-LPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVA-R------------RCQYADFTHPYTESGLVM 448 (720)
Q Consensus 383 l~~~la~~-l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~-~------------r~~~~~fs~p~~~~~~~~ 448 (720)
+.+.+.++ .|.++++ .+ .++....++.|.+|++|+++....... . +.+.+.+..+++.....+
T Consensus 39 la~~~~~~~~g~~v~v--~~-~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 115 (314)
T 1us5_A 39 IAKLVNDANVGIRANA--RS-TGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALYPEVVHV 115 (314)
T ss_dssp HHHHHHHHTSSEEEEE--EC-CSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEEEEEEEE
T ss_pred HHHHHHhcCCCceEEE--Ee-cCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhhcCcceEEE
Confidence 45555554 5755443 33 234678899999999999875432211 0 112344434666677788
Q ss_pred EEeccc
Q 043468 449 IFPVQK 454 (720)
Q Consensus 449 ~v~~~~ 454 (720)
++++..
T Consensus 116 vv~~~~ 121 (314)
T 1us5_A 116 VARKDA 121 (314)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 887664
No 203
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=72.66 E-value=17 Score=36.12 Aligned_cols=45 Identities=4% Similarity=-0.086 Sum_probs=30.6
Q ss_pred EEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeee
Q 043468 378 GFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDV 425 (720)
Q Consensus 378 G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~ 425 (720)
|+.+-.=+-+.++.|+++++.... ++..++..|.+|++|+++++.
T Consensus 23 p~~vA~~kG~f~e~GLdVei~~~~---~~~~~~~al~sG~~D~g~~~~ 67 (342)
T 4esw_A 23 PVYLANIKGYFKDENLDIAILEPS---NPSDVTELVGSGKVDMGLKAM 67 (342)
T ss_dssp HHHHHHHTTHHHHTTCEEEEEEES---SGGGHHHHHHHTSSSEEEEEH
T ss_pred HHHHHHHCCchHHcCCeEEEEeCC---ChHHHHHHHHcCCcCEEEecH
Confidence 443333344556678776665543 467799999999999997654
No 204
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=72.62 E-value=35 Score=32.52 Aligned_cols=40 Identities=15% Similarity=-0.017 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEe
Q 043468 381 IELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVV 422 (720)
Q Consensus 381 ~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~ 422 (720)
..++..+.+..|+++++ .+.-|+...++..|.+|++|+.+
T Consensus 22 ~~~~~~~le~~G~~Ve~--~~~~g~~~~~~~al~~G~iD~~~ 61 (275)
T 1sw5_A 22 ANMIAILLEENGYKAEV--KEGLGGTLVNYEALKRNDIQLYV 61 (275)
T ss_dssp HHHHHHHHHHTTCCEEE--CTTCCSHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHHHHcCCcEEE--EeCCCchHHHHHHHHcCCCcEEE
Confidence 35666666777877544 43123567889999999999986
No 205
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=72.05 E-value=2.1 Score=42.81 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=40.3
Q ss_pred ccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 043468 503 QTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARG 554 (720)
Q Consensus 503 ~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~ 554 (720)
.+.+++|+++ .+.|+. |.+..+|++.++|.++++++.+...+.+.+.+....
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888887 455664 788999999999999999999999998888876643
No 206
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=70.60 E-value=26 Score=30.30 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=60.7
Q ss_pred CeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC----HHHHHHHHH
Q 043468 76 WHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS----LELAVHLFE 151 (720)
Q Consensus 76 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~----~~~~~~~l~ 151 (720)
..+|.+.....+...-+ ..-+...++..|++|..--. .. ..+..++.+++.++|+|.+.+. ......+++
T Consensus 18 ~~~vlla~~~gd~HdiG-~~~va~~l~~~G~eVi~lG~----~~-p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~ 91 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRG-AKVVARALRDAGFEVVYTGL----RQ-TPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMA 91 (161)
T ss_dssp SCEEEEEEESSSSCCHH-HHHHHHHHHHTTCEEECCCS----BC-CHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHH-HHHHHHHHHHCCCEEEECCC----CC-CHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHH
Confidence 34666665555654455 78888999999998765321 12 6677888888899999998763 466777788
Q ss_pred HHHHcCCCCCCeEEEEeC
Q 043468 152 KANKMKMMEKDYIWITTD 169 (720)
Q Consensus 152 ~a~~~g~~~~~~~~i~~~ 169 (720)
++++.+... -.+|+++.
T Consensus 92 ~L~~~g~~~-i~v~vGG~ 108 (161)
T 2yxb_A 92 KLRELGADD-IPVVLGGT 108 (161)
T ss_dssp HHHHTTCTT-SCEEEEEC
T ss_pred HHHhcCCCC-CEEEEeCC
Confidence 888887632 33566544
No 207
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=70.60 E-value=18 Score=27.11 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=28.9
Q ss_pred CeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEE
Q 043468 51 PFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEI 108 (720)
Q Consensus 51 ~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v 108 (720)
.+-.|+.-++...-+.+-++++.++.+-+.++.+|..+ ++......+..|.+|
T Consensus 26 gfkvrtvrspqelkdsieelvkkynativvvvvddkew-----aekairfvkslgaqv 78 (134)
T 2l69_A 26 GFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEW-----AEKAIRFVKSLGAQV 78 (134)
T ss_dssp TCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHH-----HHHHHHHHHHHCCCC
T ss_pred CceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHH-----HHHHHHHHHhcCCeE
Confidence 45566666666666666666666666555554443332 444444455555544
No 208
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=69.83 E-value=20 Score=35.78 Aligned_cols=109 Identities=13% Similarity=0.173 Sum_probs=68.0
Q ss_pred CeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhh
Q 043468 51 PFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLK 130 (720)
Q Consensus 51 ~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~ 130 (720)
|+-+.+.+... ..+.++++.++.+++.|+++..... ...+.+.+.+++.|+++......+..+.+..... +.++
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~--~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~ 85 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYE--LFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKI 85 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHH--HHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTS
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHH--HHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhh
Confidence 45555555533 3356677777888999998765431 2368889999999988754432343333256666 7777
Q ss_pred cCCCeEEEEEc--CHHHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 043468 131 GGQCRVFVVHL--SLELAVHLFEKANKMKMMEKDYIWITTDA 170 (720)
Q Consensus 131 ~~~~~vvil~~--~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 170 (720)
+.++|+||-.+ +.-|+..++... .++ .++-|-|..
T Consensus 86 ~~~~d~IIavGGGsv~D~aK~vA~~--~~~---p~i~IPTT~ 122 (354)
T 3ce9_A 86 PAEVDALIGIGGGKAIDAVKYMAFL--RKL---PFISVPTST 122 (354)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHHHH--HTC---CEEEEESCC
T ss_pred hcCCCEEEEECChHHHHHHHHHHhh--cCC---CEEEecCcc
Confidence 78999988654 446666666533 344 445555544
No 209
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=69.46 E-value=3.7 Score=43.61 Aligned_cols=51 Identities=8% Similarity=0.058 Sum_probs=40.9
Q ss_pred cccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 043468 502 HQTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTA 552 (720)
Q Consensus 502 ~~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~ 552 (720)
..+..++|+++ .+.|+. |.+..+|++.++++++++++.+.+.+.+.+.+..
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888 344554 7788899999999999999999999988876543
No 210
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=69.26 E-value=9.7 Score=34.34 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=48.0
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+..+++..+.++. +.++++... +...+.++|.+|++|+++....... ..+. +.++....+++++++..
T Consensus 17 ~~l~~~l~~~~~~~P~i~i~i~~~----~~~~~~~~l~~g~~Dl~i~~~~~~~---~~~~-~~~l~~~~~~~v~~~~~ 86 (219)
T 3jv9_A 17 YLLPKLIVSLRRTAPKMPLMLEEN----YTHTLTESLKRGDVDAIIVAEPFQE---PGIV-TEPLYDEPFFVIVPKGH 86 (219)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEEE----CHHHHHHHHHHTSSSEEEEESSCCC---TTEE-EEEEEEEEEEEEEETTC
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeC----CcHHHHHHHHcCCCCEEEEcCCCCC---CCee-EEEeeeceEEEEEeCCC
Confidence 35567888888776 556555432 3578999999999999986543322 2232 46788889999998764
No 211
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=68.70 E-value=7.3 Score=37.48 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=64.7
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHH-HHHhCCCeEEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAA-IVQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~-~l~~~~~~~v~ii~~ 84 (720)
++++.+|+=+.+++.+.++-.+-+..++|+|+.. ++.++ .++..+.++|+|+..
T Consensus 67 ~~g~d~IViACNTas~~~l~~lr~~~~iPVigii-------------------------ep~~~~A~~~~~~~rIgVlaT 121 (276)
T 2dwu_A 67 QFPLKALVVACNTAAAATLAALQEALSIPVIGVI-------------------------HPGARAAIKVTKKGKIGVIGT 121 (276)
T ss_dssp TSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESH-------------------------HHHHHHHHHHCSSSEEEEEEC
T ss_pred HCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEecc-------------------------HHHHHHHHHhcCCCeEEEEeC
Confidence 5778888876666655555556666778877421 11121 223345678888876
Q ss_pred cCCCcccCcHHHHHHHHHHc--CcEEEEEEecCC-------CC---c---ccHHHHHHHhhcCCCeEEEEEcCH-HHHHH
Q 043468 85 DIDSSATGILPHLSDALREA--GAEIIHVLALPH-------FP---S---SRLSEELEKLKGGQCRVFVVHLSL-ELAVH 148 (720)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~--g~~v~~~~~~~~-------~~---~---~d~~~~l~~i~~~~~~vvil~~~~-~~~~~ 148 (720)
....- ...+++.+++. +.+|.... .+. +. . ..+..+++.+++.++|+||+.|.. .....
T Consensus 122 ~~T~~----s~~y~~~i~~~~~~~~v~~~~-~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh~p~l~~ 196 (276)
T 2dwu_A 122 VGTIQ----SNMYEKALHELDTYLKVHSHA-CPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLES 196 (276)
T ss_dssp HHHHH----TTHHHHHHHHHCTTCEEEEEE-CTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTTGGGGHH
T ss_pred hhhhh----hHHHHHHHHHhCCCCEEEeee-CHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCCHHHHHH
Confidence 65421 11344445543 55554332 221 11 1 145567777777899999998854 33344
Q ss_pred HHH
Q 043468 149 LFE 151 (720)
Q Consensus 149 ~l~ 151 (720)
.++
T Consensus 197 ~i~ 199 (276)
T 2dwu_A 197 YIK 199 (276)
T ss_dssp HHH
T ss_pred HHH
Confidence 343
No 212
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=67.73 E-value=20 Score=30.87 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=55.3
Q ss_pred CeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC--HHHH--HHHHH
Q 043468 76 WHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS--LELA--VHLFE 151 (720)
Q Consensus 76 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~--~~~~--~~~l~ 151 (720)
-+++.|+|.+..+....+++.+.+.+++.|+++... .+... . +....+..+. ++|.|++.++ .... ..++.
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~-~~~~~-~-~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~l~ 78 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVV-DLGAA-V-DLQELRELVG--RCTGLVIGMSPAASAASIQGALS 78 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEE-ESSSC-C-CHHHHHHHHH--TEEEEEEECCBTTSHHHHHHHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEE-ECcCc-C-CHHHHHHHHH--hCCEEEEEcCcCCCCccHHHHHH
Confidence 368999998877666667888889998889875432 22221 0 3444555554 4788887652 2222 36777
Q ss_pred HHHHcCCCCCCeEEEEeCcc
Q 043468 152 KANKMKMMEKDYIWITTDAF 171 (720)
Q Consensus 152 ~a~~~g~~~~~~~~i~~~~~ 171 (720)
......+.++....+++..|
T Consensus 79 ~l~~~~~~~k~va~fgs~g~ 98 (159)
T 3fni_A 79 TILGSVNEKQAVGIFETGGG 98 (159)
T ss_dssp HHHHHCCTTSEEEEECCSSS
T ss_pred HHHhhcccCCEEEEEEcCCC
Confidence 76666665544444444333
No 213
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=67.44 E-value=72 Score=28.85 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=46.5
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+...++..+.++. +.++++. . ++...++++|.+|++|+++...... ...+. +.++....+++++++..
T Consensus 43 ~~l~~~l~~f~~~~P~v~l~~~--~--~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 43 YFIGPLMADFYARYPSITLQLQ--E--MSQEKIEDMLCRDELDVGIAFAPVH---SPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp TTHHHHHHHHHHHCTTSCEEEE--E--CCHHHHHHHHHTTSCSEEEEESSCC---CTTEE-EEEEEEEEEEEEEETTS
T ss_pred HHHHHHHHHHHHhCCCcEEEEE--E--CCHHHHHHHHHcCCCcEEEEcCCCC---cccce-eeeeccCcEEEEEcCCC
Confidence 45667888888877 4454443 3 2357889999999999998543221 12233 35788888898888764
No 214
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=66.71 E-value=81 Score=30.10 Aligned_cols=69 Identities=10% Similarity=0.050 Sum_probs=44.7
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeee---eeeeccceeeeeecccccccceEEEEecc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGD---VAIVARRCQYADFTHPYTESGLVMIFPVQ 453 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~---~~~t~~r~~~~~fs~p~~~~~~~~~v~~~ 453 (720)
.+..+++..+.++. +.+ +..... +...++..|.+|++|+++.. ....+ ..+. +.++....+++++++.
T Consensus 114 ~~l~~~l~~f~~~~P~i~--i~l~~~--~~~~~~~~l~~g~~Dl~i~~~~~~~~~~---~~l~-~~~l~~~~~~~v~~~~ 185 (310)
T 2esn_A 114 ALLPPLMNRLQHSAPGVR--LRLVNA--ERKLSVEALASGRIDFALGYDEEHERLP---EGIQ-AHDWFADRYVVVARRD 185 (310)
T ss_dssp HHHHHHHHHHHHHSTTCE--EEEECC--SSSCCHHHHHHTSSSEEEECCSTTCCCC---TTEE-EEEEEEECEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCeE--EEEEeC--CcccHHHHHHcCCCCEEEecCcccccCC---cCcc-eeeeeccceEEEEeCC
Confidence 45567888888776 444 444332 23457888999999999854 22221 2222 3578888899998876
Q ss_pred c
Q 043468 454 K 454 (720)
Q Consensus 454 ~ 454 (720)
.
T Consensus 186 ~ 186 (310)
T 2esn_A 186 H 186 (310)
T ss_dssp C
T ss_pred C
Confidence 4
No 215
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=66.13 E-value=19 Score=36.49 Aligned_cols=100 Identities=10% Similarity=0.105 Sum_probs=64.8
Q ss_pred CeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCc-ccHHHHHHHh
Q 043468 51 PFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPS-SRLSEELEKL 129 (720)
Q Consensus 51 ~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~d~~~~l~~i 129 (720)
|+-+.+.+... ..+.++++.+|.+++.|+++.... ..++.+.+.+.+++.|+++.....+.+..+ +.....++.+
T Consensus 9 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~-~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~ 84 (386)
T 1rrm_A 9 NETAWFGRGAV---GALTDEVKRRGYQKALIVTDKTLV-QCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVF 84 (386)
T ss_dssp CSEEEESTTGG---GGHHHHHHHHTCCEEEEECBHHHH-HTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcCCCEEEEEECcchh-hchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHH
Confidence 34344444432 335566666788899888765432 234589999999999988754433333322 2677778888
Q ss_pred hcCCCeEEEEEc--CHHHHHHHHHHHH
Q 043468 130 KGGQCRVFVVHL--SLELAVHLFEKAN 154 (720)
Q Consensus 130 ~~~~~~vvil~~--~~~~~~~~l~~a~ 154 (720)
++.++|+||-.+ +.-|+..++....
T Consensus 85 ~~~~~d~IIavGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 85 QNSGADYLIAIGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp HHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred HhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence 888999988554 4566777766655
No 216
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=66.07 E-value=11 Score=32.57 Aligned_cols=88 Identities=13% Similarity=0.032 Sum_probs=52.4
Q ss_pred EEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHH--HHHHHHH
Q 043468 78 QVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELA--VHLFEKA 153 (720)
Q Consensus 78 ~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~--~~~l~~a 153 (720)
++.|+|.+..+....+++.+.+.+++.|+++... .+ ... +....+..+. ++|.|++.+ ++... ..|+...
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~-~~--~~~-~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~fl~~l 75 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMV-DL--RAV-DPQELIEAVS--SARGIVLGTPPSQPSEAVATALSTI 75 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEE-ET--TTC-CHHHHHHHHH--HCSEEEEECCBSSCCHHHHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEE-EC--CCC-CHHHHHHHHH--hCCEEEEEcCCcCCchhHHHHHHHH
Confidence 5788988776665667788888898888764322 22 222 5555555554 366676654 22222 4677777
Q ss_pred HHcCCCCCCeEEEEeCcc
Q 043468 154 NKMKMMEKDYIWITTDAF 171 (720)
Q Consensus 154 ~~~g~~~~~~~~i~~~~~ 171 (720)
....+.++....+++..|
T Consensus 76 ~~~~l~gk~v~~fgs~g~ 93 (161)
T 3hly_A 76 FAAAHNKQAIGLFDSYGG 93 (161)
T ss_dssp HHHCCTTSEEEEECCCCS
T ss_pred HhhhhCCCEEEEEEcCCC
Confidence 665565544444444333
No 217
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=65.83 E-value=2.6 Score=39.31 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=43.0
Q ss_pred hCCCeEEEEEEEcCCCcccCcHHHHHHHH-HHcCcEEEEEEec---CCCCc---ccHHHHHHHhhcCCCeEEEEEcCHHH
Q 043468 73 SWEWHQVTVIYEDIDSSATGILPHLSDAL-REAGAEIIHVLAL---PHFPS---SRLSEELEKLKGGQCRVFVVHLSLEL 145 (720)
Q Consensus 73 ~~~~~~v~ii~~~~~~g~~~~~~~~~~~~-~~~g~~v~~~~~~---~~~~~---~d~~~~l~~i~~~~~~vvil~~~~~~ 145 (720)
..+ ++|+|+...... ...+++.+ ++.|.++...... ..... ..+...++++.+.++|+|++.|.+-.
T Consensus 113 ~~~-~rigVlat~~t~-----~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 113 AYG-RRVGVLNLTEET-----PKVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp TTC-SSEEEECSSSCC-----CHHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred HhC-CeEEEEecCccc-----HHHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 456 899999875432 34678888 8888764211000 00000 13555666666668999999887765
Q ss_pred HHHHHHH
Q 043468 146 AVHLFEK 152 (720)
Q Consensus 146 ~~~~l~~ 152 (720)
...+...
T Consensus 187 t~~~~~~ 193 (228)
T 2eq5_A 187 TIGIAPV 193 (228)
T ss_dssp HHTCHHH
T ss_pred hHHHHHH
Confidence 3333333
No 218
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=64.65 E-value=6 Score=40.23 Aligned_cols=93 Identities=8% Similarity=0.024 Sum_probs=53.3
Q ss_pred CeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCc-ccHHHHHHHh
Q 043468 51 PFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPS-SRLSEELEKL 129 (720)
Q Consensus 51 ~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~d~~~~l~~i 129 (720)
|.-+.+.+... ..+.++++.+| +|+.||++..... . +.+.+.+.+++ |+++.. ..++.... ++....++.+
T Consensus 31 p~~i~~G~g~l---~~l~~~l~~~g-~r~liVtd~~~~~-~-~~~~v~~~L~~-g~~~~~-~~~~~~p~~~~v~~~~~~~ 102 (387)
T 3uhj_A 31 PNKYIQRAGEI---DKLAAYLAPLG-KRALVLIDRVLFD-A-LSERIGKSCGD-SLDIRF-ERFGGECCTSEIERVRKVA 102 (387)
T ss_dssp CSEEEECTTTT---TTTHHHHGGGC-SEEEEEECTTTHH-H-HHHHC-------CCEEEE-EECCSSCSHHHHHHHHHHH
T ss_pred CCeEEEcCCHH---HHHHHHHHHcC-CEEEEEECchHHH-H-HHHHHHHHHHc-CCCeEE-EEcCCCCCHHHHHHHHHHH
Confidence 33344444432 34566777788 8998887765532 2 47888889999 988733 33333332 2677777778
Q ss_pred hcCCCeEEEEEcCH--HHHHHHHH
Q 043468 130 KGGQCRVFVVHLSL--ELAVHLFE 151 (720)
Q Consensus 130 ~~~~~~vvil~~~~--~~~~~~l~ 151 (720)
++.++|+||-.+.| -|+..++.
T Consensus 103 ~~~~~d~IIavGGGs~~D~AK~iA 126 (387)
T 3uhj_A 103 IEHGSDILVGVGGGKTADTAKIVA 126 (387)
T ss_dssp HHHTCSEEEEESSHHHHHHHHHHH
T ss_pred hhcCCCEEEEeCCcHHHHHHHHHH
Confidence 88899998766544 44444443
No 219
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=63.40 E-value=15 Score=36.61 Aligned_cols=82 Identities=7% Similarity=0.046 Sum_probs=54.1
Q ss_pred CCeEEEEEEEcCCC--cccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhc--CCCeEEEEEcCHHHHHHHH
Q 043468 75 EWHQVTVIYEDIDS--SATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKG--GQCRVFVVHLSLELAVHLF 150 (720)
Q Consensus 75 ~~~~v~ii~~~~~~--g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~--~~~~vvil~~~~~~~~~~l 150 (720)
+-.+|+++..+... .-..+.+.+++.+++.|+++.... ...+.......++++.+ .++|.|++.........++
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~--~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~ 79 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY--AERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQIL 79 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE--CTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE--CCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHH
Confidence 34689999876432 223347889999999999876652 22221133456666665 5999998876555667778
Q ss_pred HHHHHcCC
Q 043468 151 EKANKMKM 158 (720)
Q Consensus 151 ~~a~~~g~ 158 (720)
+.+.+.|.
T Consensus 80 ~~~~~~gi 87 (350)
T 3h75_A 80 RLSQGSGI 87 (350)
T ss_dssp HHHTTSCC
T ss_pred HHHHhCCC
Confidence 88887776
No 220
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=63.38 E-value=43 Score=30.34 Aligned_cols=89 Identities=8% Similarity=-0.031 Sum_probs=61.2
Q ss_pred CeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC----HHHHHHHHH
Q 043468 76 WHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS----LELAVHLFE 151 (720)
Q Consensus 76 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~----~~~~~~~l~ 151 (720)
..+|.+....++...-+ ..-+...++.+|++|..-- . .. ..+..+..+++.++|+|.+.+. ......+++
T Consensus 88 ~~~vll~~~~gd~H~iG-~~~va~~l~~~G~~v~~LG---~-~v-p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~ 161 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIG-KNLVAMMLESGGFTVYNLG---V-DI-EPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTID 161 (210)
T ss_dssp CCEEEEEEBTTCCCCHH-HHHHHHHHHHTTCEEEECC---S-SB-CHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHH-HHHHHHHHHHCCCEEEECC---C-CC-CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHH
Confidence 34676666666665555 7888889999999976532 1 22 6677788888889999998763 356777888
Q ss_pred HHHHcCCCCCCeEEEEeCc
Q 043468 152 KANKMKMMEKDYIWITTDA 170 (720)
Q Consensus 152 ~a~~~g~~~~~~~~i~~~~ 170 (720)
..++.+....-.+++++..
T Consensus 162 ~l~~~~~~~~~~v~vGG~~ 180 (210)
T 1y80_A 162 ALIAAGLRDRVKVIVGGAP 180 (210)
T ss_dssp HHHHTTCGGGCEEEEESTT
T ss_pred HHHhcCCCCCCeEEEECCC
Confidence 8888876432345555443
No 221
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=62.72 E-value=9.9 Score=36.89 Aligned_cols=82 Identities=11% Similarity=-0.034 Sum_probs=53.5
Q ss_pred CeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc-CHHHHHHHHHHH
Q 043468 76 WHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL-SLELAVHLFEKA 153 (720)
Q Consensus 76 ~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~-~~~~~~~~l~~a 153 (720)
-++++++..+.. ..-..+.+.+++.+++.|.++..... ...+.......++.+.+.++|.|++.. ........++++
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGA-AQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEEC-SSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCC-CcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 367888876543 22234478899999999998765322 112211455667777778999888765 444456678888
Q ss_pred HHcCC
Q 043468 154 NKMKM 158 (720)
Q Consensus 154 ~~~g~ 158 (720)
.+.|.
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88876
No 222
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=62.60 E-value=6.2 Score=37.75 Aligned_cols=109 Identities=11% Similarity=0.083 Sum_probs=62.2
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHH-HHhCCCeEEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAI-VQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~-l~~~~~~~v~ii~~ 84 (720)
+.++.+|+-+.+++.+..+..+-+..++|+|+. .++.+.. ++..+.++|+|+..
T Consensus 63 ~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi-------------------------~ep~~~~A~~~~~~~rIgVlaT 117 (267)
T 2gzm_A 63 DLNIKMLVIACNTATAVVLEEMQKQLPIPVVGV-------------------------IHPGSRTALKVTNTYHVGIIGT 117 (267)
T ss_dssp TTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCSSCEEEEEEC
T ss_pred HCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee-------------------------cHHHHHHHHHccCCCEEEEEEC
Confidence 567888877666665445555666678888752 1222222 23345678888866
Q ss_pred cCCCcccCcHHHHHHHHHHc--CcEEEEEEec------CCCCc------ccHHHHHHHhhcCCCeEEEEEcCH
Q 043468 85 DIDSSATGILPHLSDALREA--GAEIIHVLAL------PHFPS------SRLSEELEKLKGGQCRVFVVHLSL 143 (720)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~--g~~v~~~~~~------~~~~~------~d~~~~l~~i~~~~~~vvil~~~~ 143 (720)
...- . ...+++.+++. |++|...... ..+.. ..+...++.+.+.++|+||+.|..
T Consensus 118 ~~T~---~-~~~y~~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLGCTh 186 (267)
T 2gzm_A 118 IGTV---K-SGAYEEALKSINNRVMVESLACPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTH 186 (267)
T ss_dssp HHHH---H-HTHHHHHHHHHCTTCEEEEEECTTHHHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEECSTT
T ss_pred hHHh---c-cHHHHHHHHHhCCCCEEeccCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcccC
Confidence 4331 1 22456666666 6666543211 11111 135556667777789999998854
No 223
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=62.47 E-value=19 Score=34.70 Aligned_cols=86 Identities=7% Similarity=0.008 Sum_probs=56.3
Q ss_pred hCCCeEEEEEEEcC--CCcccCcHHHHHHHHHHc-CcEEEEEEec-CCCCcccHHHHHHHhhcCCCeEEEEEcC-HHHHH
Q 043468 73 SWEWHQVTVIYEDI--DSSATGILPHLSDALREA-GAEIIHVLAL-PHFPSSRLSEELEKLKGGQCRVFVVHLS-LELAV 147 (720)
Q Consensus 73 ~~~~~~v~ii~~~~--~~g~~~~~~~~~~~~~~~-g~~v~~~~~~-~~~~~~d~~~~l~~i~~~~~~vvil~~~-~~~~~ 147 (720)
...-++|+++..+. +..-..+.+.+++.+++. |..+...... ...+.......++.+.+.++|.||+... .+...
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 84 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK 84 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHH
Confidence 34457899888774 333344478888889888 7776665442 2222224556788888889999888664 33456
Q ss_pred HHHHHHHHcCC
Q 043468 148 HLFEKANKMKM 158 (720)
Q Consensus 148 ~~l~~a~~~g~ 158 (720)
..++.+.+.|.
T Consensus 85 ~~~~~~~~~~i 95 (304)
T 3gbv_A 85 GFTDALNELGI 95 (304)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
Confidence 67888888776
No 224
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=62.41 E-value=26 Score=28.18 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
.+.+++.+++.|.++... . +....+..+.+..+|+|++.. .+.+...++++.++..
T Consensus 16 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 73 (127)
T 3i42_A 16 AETFKELLEMLGFQADYV---M-----SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALP 73 (127)
T ss_dssp HHHHHHHHHHTTEEEEEE---S-----SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCEEEE---C-----CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 688899999999865432 1 556677777778899999975 4567788888888863
No 225
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=62.04 E-value=39 Score=30.85 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=60.6
Q ss_pred eEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEE--EcCH----HHHHHHH
Q 043468 77 HQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVV--HLSL----ELAVHLF 150 (720)
Q Consensus 77 ~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil--~~~~----~~~~~~l 150 (720)
.+|.+-...++...-+ ..-+...++.+|++|.+- .. .. .....++.+++.++|+|.+ .+.. .....++
T Consensus 93 ~~vll~~v~gd~HdiG-~~iv~~~l~~~G~~Vi~L---G~-~v-p~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i 166 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIG-HRLVTTMLGANGFQIVDL---GV-DV-LNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLM 166 (215)
T ss_dssp CEEEEEECTTCCCCHH-HHHHHHHHHHTSCEEEEC---CS-SC-CHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHH
T ss_pred CeEEEEeCCCChhHHH-HHHHHHHHHHCCCeEEEc---CC-CC-CHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHH
Confidence 4666655555655455 788899999999998763 21 22 6777888888899999988 6532 3356678
Q ss_pred HHHHHcCCCCCCeEEEEeCcc
Q 043468 151 EKANKMKMMEKDYIWITTDAF 171 (720)
Q Consensus 151 ~~a~~~g~~~~~~~~i~~~~~ 171 (720)
+++++.|+...-.+|+++...
T Consensus 167 ~~l~~~~~~~~v~v~vGG~~~ 187 (215)
T 3ezx_A 167 DRLNEEKLRDSVKCMFGGAPV 187 (215)
T ss_dssp HHHHHTTCGGGSEEEEESSSC
T ss_pred HHHHHcCCCCCCEEEEECCCC
Confidence 888888874323456655443
No 226
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=61.78 E-value=14 Score=36.49 Aligned_cols=86 Identities=7% Similarity=0.089 Sum_probs=52.8
Q ss_pred HHhCCCeEEEEEEEc---CCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHH
Q 043468 71 VQSWEWHQVTVIYED---IDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAV 147 (720)
Q Consensus 71 l~~~~~~~v~ii~~~---~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~ 147 (720)
++...-++|+++..+ ++..-..+.+.+++.+++.|.++..... ..+.......++.+.+.++|.|++........
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 133 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVD 133 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC--TTSHHHHHHHHHHHHHTTCSEEEECCSSSCHH
T ss_pred hhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCChH
Confidence 333445689999876 2222233478889999999998765442 22211344567777788999988866433334
Q ss_pred HHHHHHHHcCC
Q 043468 148 HLFEKANKMKM 158 (720)
Q Consensus 148 ~~l~~a~~~g~ 158 (720)
.+.+.+.+.+.
T Consensus 134 ~~~~~~~~~~i 144 (338)
T 3dbi_A 134 EIDDIIDAHSQ 144 (338)
T ss_dssp HHHHHHHHCSS
T ss_pred HHHHHHHcCCC
Confidence 55666666665
No 227
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=61.46 E-value=14 Score=36.06 Aligned_cols=79 Identities=10% Similarity=0.102 Sum_probs=54.5
Q ss_pred eEEEEEEEc--CCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC-HHHHHHHHHHH
Q 043468 77 HQVTVIYED--IDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS-LELAVHLFEKA 153 (720)
Q Consensus 77 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~-~~~~~~~l~~a 153 (720)
++|+++..+ +.+. ..+.+.+++.+++.|.++..... ..+.......++.+.+.++|.|++... .......++.+
T Consensus 3 ~~Igvi~~~~~~~~~-~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERW-QKDRDIFVKKAESLGAKVFVQSA--NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTT-HHHHHHHHHHHHHTSCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHH-HHHHHHHHHHHHHcCCEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 578888875 2333 34488999999999998776533 222214556777787889999888664 44445678888
Q ss_pred HHcCC
Q 043468 154 NKMKM 158 (720)
Q Consensus 154 ~~~g~ 158 (720)
.+.|.
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 88776
No 228
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=61.42 E-value=19 Score=34.63 Aligned_cols=114 Identities=10% Similarity=-0.001 Sum_probs=62.5
Q ss_pred ccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEE
Q 043468 3 LMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVI 82 (720)
Q Consensus 3 Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii 82 (720)
|+++.++.+|+-+.++..+..+-.+-+..++|+|+.. |. ....++..+.++|+|+
T Consensus 79 ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi~------------------~a-------~~~a~~~~~~~rIgVL 133 (285)
T 2jfn_A 79 VQERYPLALAVVACNTASTVSLPALREKFDFPVVGVV------------------PA-------IKPAARLTANGIVGLL 133 (285)
T ss_dssp HHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECCC------------------CC-------HHHHHHHCSSSEEEEE
T ss_pred HHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEehH------------------HH-------HHHHHHhcCCCEEEEE
Confidence 4445788888877766665555566677789988521 21 1111233455677777
Q ss_pred EEcCCCcccCcHHHHHHHHHHcC--cEEEEEEec-----------CC-CCcccHHHHHHHhhc--CCCeEEEEEcCHHH
Q 043468 83 YEDIDSSATGILPHLSDALREAG--AEIIHVLAL-----------PH-FPSSRLSEELEKLKG--GQCRVFVVHLSLEL 145 (720)
Q Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~g--~~v~~~~~~-----------~~-~~~~d~~~~l~~i~~--~~~~vvil~~~~~~ 145 (720)
.....- . ...+++.+++.| .+|.....- .. .....+...++.+.+ .++|+||+.|..-.
T Consensus 134 aT~~T~---~-s~~y~~~l~~~g~~~~v~~~~~~~lv~~ie~~~~~~~~~~~~l~~~l~~l~~~~~~~D~IVLGCTh~p 208 (285)
T 2jfn_A 134 ATRGTV---K-RSYTHELIARFANECQIEMLGSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVLGCTHFP 208 (285)
T ss_dssp ECTTGG---G-CHHHHHHHHHSCTTSEEEEEECHHHHHHHHHHHHTCCCCHHHHHHHTHHHHTCSSCCSEEEECSTTGG
T ss_pred EcHHHH---h-hHHHHHHHHHhCCCCEEeCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCcH
Confidence 664431 1 244666666666 333332110 00 011145566666654 47899999885433
No 229
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=61.40 E-value=4.9 Score=37.41 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEE
Q 043468 65 KAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEII 109 (720)
Q Consensus 65 ~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~ 109 (720)
++.++.+...+.++|+++...... . ...+++.+++.|+++.
T Consensus 105 ~~~~~~a~~~~~~rigvlaT~~T~---~-~~~y~~~l~~~g~~v~ 145 (228)
T 1jfl_A 105 EETAKKVKELGFKKAGLLATTGTI---V-SGVYEKEFSKYGVEIM 145 (228)
T ss_dssp HHHHHHHHHTTCSEEEEECCHHHH---H-HTHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEecHHHh---h-hhHHHHHHHHCCCeEE
Confidence 344444443367889998665432 0 2355677777887753
No 230
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=61.03 E-value=23 Score=28.70 Aligned_cols=57 Identities=9% Similarity=0.009 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
...+++.+++.|..+... . +....+..+.+..+|+|++.. .+.+...++++.++...
T Consensus 19 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~ 77 (132)
T 3lte_A 19 AAAIERVLKRDHWQVEIA---H-----NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKV 77 (132)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHCCcEEEEe---C-----CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCc
Confidence 678888899989876432 1 555677777778899999975 45567788888887653
No 231
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=61.02 E-value=6.4 Score=36.76 Aligned_cols=74 Identities=9% Similarity=0.024 Sum_probs=52.3
Q ss_pred EEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccce---eeeeecccccccceEEEEecc
Q 043468 377 GGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRC---QYADFTHPYTESGLVMIFPVQ 453 (720)
Q Consensus 377 ~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~---~~~~fs~p~~~~~~~~~v~~~ 453 (720)
.|+.-+|+..+.++.+.++++.... -..++.++.+|.+|+.+..-....+.. ....-..++....+++++|+.
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~g----Sg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVlV~P~~ 93 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIAVG----TGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVIVGPKN 93 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEEEC----HHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEEEECTT
T ss_pred hHHHHHHHHHHHHHhCCeEEEEEcC----hHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEEEEECC
Confidence 3777889999998888776655433 377899999999999976544333221 111224588889999999987
Q ss_pred c
Q 043468 454 K 454 (720)
Q Consensus 454 ~ 454 (720)
+
T Consensus 94 ~ 94 (236)
T 3lr1_A 94 D 94 (236)
T ss_dssp C
T ss_pred C
Confidence 6
No 232
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=60.90 E-value=17 Score=34.79 Aligned_cols=81 Identities=11% Similarity=0.095 Sum_probs=56.0
Q ss_pred CeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc-CHHHHHHHHHHH
Q 043468 76 WHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL-SLELAVHLFEKA 153 (720)
Q Consensus 76 ~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~-~~~~~~~~l~~a 153 (720)
-++|+++..+.. .....+.+.+++.+++.|+++..... ..+.......++.+.+.++|.|++.. ........++.+
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA--GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 357899887533 22233478899999999998766532 22211456677777778999988765 456667788888
Q ss_pred HHcCC
Q 043468 154 NKMKM 158 (720)
Q Consensus 154 ~~~g~ 158 (720)
.+.|.
T Consensus 83 ~~~~i 87 (291)
T 3l49_A 83 NDAGI 87 (291)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88887
No 233
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=60.76 E-value=6.2 Score=37.73 Aligned_cols=57 Identities=9% Similarity=0.134 Sum_probs=42.4
Q ss_pred cchhhhhhh-----hccCCc-ccccc-------hhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCC
Q 043468 504 TGTFFWLSF-----NLHGEK-LHSNL-------SRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVN 560 (720)
Q Consensus 504 ~~~~~~~~~-----~~~g~~-~~~~~-------~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~ 560 (720)
+.+++|+++ .+.|+. |.+.. .|++.++|+++++.+.+...+.+...+...+....+.
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~ 271 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFY 271 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888877 555664 44443 5999999999999999999999988876655444433
No 234
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=60.46 E-value=13 Score=35.74 Aligned_cols=83 Identities=8% Similarity=-0.005 Sum_probs=54.3
Q ss_pred CCCeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc-CHHHHHHHHH
Q 043468 74 WEWHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL-SLELAVHLFE 151 (720)
Q Consensus 74 ~~~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~-~~~~~~~~l~ 151 (720)
..-++|+++..+.. ..-..+.+.+++.+++.|.++..... ..+.......++.+.+.++|.|++.. ..+.....++
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 83 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS--QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE 83 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC--SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 34468999887543 22233478899999999998776532 12211455677777788999888765 4444457788
Q ss_pred HHHHcCC
Q 043468 152 KANKMKM 158 (720)
Q Consensus 152 ~a~~~g~ 158 (720)
.+.+.|.
T Consensus 84 ~~~~~~i 90 (293)
T 3l6u_A 84 EAKKAGI 90 (293)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8888876
No 235
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=60.30 E-value=40 Score=32.23 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=45.5
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeeccccc-ccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYT-ESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~-~~~~~~~v~~~~ 454 (720)
.+..+++..+.++. +.++++.. ++...++.+|.+|++|+++......+ ..+. ..++. .....+++++..
T Consensus 108 ~~l~~~l~~f~~~~P~i~i~l~~----~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 108 LYLPGLIAGFRQAYPGVEIRIRD----GEQQELVQGLTSGRFDLAFLYEHDLD---STIE-TEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE----ECHHHHHHHHHHTSCSEEEECSSSCC---TTEE-EEESSCCBCCEEEEETTC
T ss_pred HHHHHHHHHHHHHCCCeEEEEEe----CCHHHHHHHHHCCCccEEEEeccccc---cccc-eeeeeeccccEEEecCCC
Confidence 45667888888877 55544443 24688999999999999985432222 2232 34666 777778887664
No 236
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=59.52 E-value=27 Score=35.13 Aligned_cols=94 Identities=10% Similarity=0.053 Sum_probs=61.6
Q ss_pred CeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcc-cHHHHHHHh
Q 043468 51 PFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSS-RLSEELEKL 129 (720)
Q Consensus 51 ~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~-d~~~~l~~i 129 (720)
|+-+.+.+... ..+.++++.+| +++.|+++..... .+.+.+.+.+++.|+++.. ..+...... +....++.+
T Consensus 10 p~~i~~G~g~~---~~l~~~l~~~g-~~~livtd~~~~~--~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~ 82 (370)
T 1jq5_A 10 PAKYVQGKNVI---TKIANYLEGIG-NKTVVIADEIVWK--IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIA 82 (370)
T ss_dssp CSEEEEETTGG---GGHHHHHTTTC-SEEEEEECHHHHH--HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHH
T ss_pred CCeEEECcCHH---HHHHHHHHHcC-CeEEEEEChHHHH--HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHH
Confidence 45455555533 33556677777 8999998765432 2378999999999998753 333333222 667777778
Q ss_pred hcCCCeEEEEEc--CHHHHHHHHH
Q 043468 130 KGGQCRVFVVHL--SLELAVHLFE 151 (720)
Q Consensus 130 ~~~~~~vvil~~--~~~~~~~~l~ 151 (720)
++.++|+||-.+ +.-|+..++.
T Consensus 83 ~~~~~d~IIavGGGsv~D~aK~iA 106 (370)
T 1jq5_A 83 RKAEAAIVIGVGGGKTLDTAKAVA 106 (370)
T ss_dssp HHTTCSEEEEEESHHHHHHHHHHH
T ss_pred HhcCCCEEEEeCChHHHHHHHHHH
Confidence 888999988654 4466666665
No 237
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=58.77 E-value=23 Score=31.00 Aligned_cols=65 Identities=9% Similarity=0.106 Sum_probs=45.0
Q ss_pred CeEEEEEEEcCCCccc-C-cHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC-CCeEEEEEc
Q 043468 76 WHQVTVIYEDIDSSAT-G-ILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG-QCRVFVVHL 141 (720)
Q Consensus 76 ~~~v~ii~~~~~~g~~-~-~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~-~~~vvil~~ 141 (720)
.-+++||...|.-|.. . -...+.+.+++.|+++.....++.... .+.+.+++..+. ++|+|+..+
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~-~i~~~l~~a~~~~~~DlVittG 77 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRY-AIRAQVSAWIASDDVQVVLITG 77 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHH-HHHHHHHHHHHSSSCCEEEEES
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHH-HHHHHHHHHHhcCCCCEEEeCC
Confidence 3488999887764421 1 146788889999999888777765433 666677766544 689988765
No 238
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=58.45 E-value=65 Score=30.79 Aligned_cols=71 Identities=10% Similarity=-0.059 Sum_probs=46.5
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+...++..+.++. +.++++... +.+.++..|.+|++|+++....... ....+ -+.++....+++++++..
T Consensus 105 ~~l~~~l~~f~~~~P~i~i~l~~~----~~~~~~~~l~~g~~Dlai~~~~~~~-~~~~l-~~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 105 AALPLALASFAREFPDVTVNVRDG----MYPAVSPQLRDGTLDFALTAAHKHD-IDTDL-EAQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp THHHHHHHHHHHHCTTCEEEEEEC----CTTTTHHHHHHTSSSEEEEECCGGG-SCTTE-EEEEEEECCEEEEEETTC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHHcCCCCEEEecCCCCC-CccCe-eEEEeecCcEEEEEcCCC
Confidence 45667888888776 555444432 2366889999999999985433221 01222 246888889999998764
No 239
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=58.08 E-value=56 Score=24.43 Aligned_cols=111 Identities=15% Similarity=0.206 Sum_probs=72.6
Q ss_pred eEEEECCCCChhhHHHHHhhccCCCcEEecccCCccc-------ccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEE
Q 043468 9 VEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNW-------ATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTV 81 (720)
Q Consensus 9 v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l-------~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~i 81 (720)
++.++-...-.+-....++...++.-+=+.-+. ..+ -...+..+.-+.-.+..+++..+.+++..|..-..|
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrsp-qelkdsieelvkkynativvvvvddkewaekairfvkslgaqvlii 81 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSP-QELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLII 81 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSH-HHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCH-HHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEE
Confidence 334443344444455667777777655443321 111 123335566677889999999999999999998889
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHh
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKL 129 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i 129 (720)
||+.|.. -++.|....+..|++|-..-. .+||...+.++
T Consensus 82 iydqdqn----rleefsrevrrrgfevrtvts-----pddfkkslerl 120 (134)
T 2l69_A 82 IYDQDQN----RLEEFSREVRRRGFEVRTVTS-----PDDFKKSLERL 120 (134)
T ss_dssp EECSCHH----HHHHHHHHHHHTTCCEEEESS-----HHHHHHHHHHH
T ss_pred EEeCchh----HHHHHHHHHHhcCceEEEecC-----hHHHHHHHHHH
Confidence 9887642 278888899999998654321 12676666654
No 240
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=57.83 E-value=17 Score=35.01 Aligned_cols=110 Identities=7% Similarity=0.075 Sum_probs=57.9
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHH-HHHHhCCCeEEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIA-AIVQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~-~~l~~~~~~~v~ii~~ 84 (720)
+.++.+|+=+.+++.+..+-.+-+..++|+|+.. ++.+ ..++..+.++|+|+..
T Consensus 82 ~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi~-------------------------e~a~~~A~~~~~~~rIgVLaT 136 (286)
T 2jfq_A 82 EFDIKMLVIACNTATAVALEYLQKTLSISVIGVI-------------------------EPGARTAIMTTRNQNVLVLGT 136 (286)
T ss_dssp TSCCSEEEECCHHHHHHHHHHHHHHCSSEEEESH-------------------------HHHHHHHHHHCSSSEEEEEEC
T ss_pred HCCCCEEEEeCCchhHHHHHHHHHhCCCCEEecc-------------------------HHHHHHHHHhcCCCEEEEEeC
Confidence 4677777766665554444455555677777521 1111 1223345678888875
Q ss_pred cCCCcccCcHHHHHHHHHHc--CcEEEEEEec------CCCCc-------ccHHHHHHHhhcCCCeEEEEEcCHH
Q 043468 85 DIDSSATGILPHLSDALREA--GAEIIHVLAL------PHFPS-------SRLSEELEKLKGGQCRVFVVHLSLE 144 (720)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~--g~~v~~~~~~------~~~~~-------~d~~~~l~~i~~~~~~vvil~~~~~ 144 (720)
...- . ...+++.+++. +.++...... ..+.. ..+...++.+++.++|+||+.|..-
T Consensus 137 ~~T~---~-~~~y~~~l~~~~~~~~v~~~~~~~~v~~ie~g~~~~~~~~~~~l~~~~~~l~~~g~D~IVLGCTh~ 207 (286)
T 2jfq_A 137 EGTI---K-SEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHY 207 (286)
T ss_dssp HHHH---H-HTHHHHHHHHHCTTCEEEEEECTTHHHHHHTTCTTCHHHHHHHHHHHHGGGTTCSCSEEEEESSSG
T ss_pred hHHh---c-chHHHHHHHHhCCCCEEEecCCHHHHHHHHcCCCCCchhHHHHHHHHHHHHHhCCCCEEEEcCcCH
Confidence 4431 0 22355555555 5555432211 11111 0244455666667899999998543
No 241
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=57.66 E-value=3.3 Score=38.66 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHc-CcEEE
Q 043468 65 KAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREA-GAEII 109 (720)
Q Consensus 65 ~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~-g~~v~ 109 (720)
++.++.+...+.++|+++.....-- ...+++.+++. |+++.
T Consensus 107 ~~~~~~a~~~~~~rVgvLaT~~T~~----s~~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 107 DATAVQIKQQGIDKIGLLGTRYTME----QGFYRGRLTEKHGIEVI 148 (231)
T ss_dssp HHHHHHHHHTTCCEEEEESCHHHHH----STTTHHHHHHTTCCEEE
T ss_pred HHHHHHHHHcCCCEEEEEcCHHHhh----chHHHHHHHhcCCCEEE
Confidence 4444444456778999997765421 12234455566 88764
No 242
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=57.07 E-value=37 Score=27.35 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=46.8
Q ss_pred CCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHH
Q 043468 75 EWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEK 152 (720)
Q Consensus 75 ~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~ 152 (720)
...+|.++ +++.. ....+++.+++.|..+... . +....+..+.+..+|+|++.. .+.+...++++
T Consensus 6 ~~~~iliv-dd~~~----~~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~ 72 (130)
T 3eod_A 6 VGKQILIV-EDEQV----FRSLLDSWFSSLGATTVLA---A-----DGVDALELLGGFTPDLMICDIAMPRMNGLKLLEH 72 (130)
T ss_dssp TTCEEEEE-CSCHH----HHHHHHHHHHHTTCEEEEE---S-----CHHHHHHHHTTCCCSEEEECCC-----CHHHHHH
T ss_pred CCCeEEEE-eCCHH----HHHHHHHHHHhCCceEEEe---C-----CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHH
Confidence 34566555 33332 2678888999999876431 1 566777788888999999875 45567788888
Q ss_pred HHHcCC
Q 043468 153 ANKMKM 158 (720)
Q Consensus 153 a~~~g~ 158 (720)
.++.+-
T Consensus 73 l~~~~~ 78 (130)
T 3eod_A 73 IRNRGD 78 (130)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 887654
No 243
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=57.07 E-value=75 Score=32.28 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=56.0
Q ss_pred CCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc------CHHHHHH
Q 043468 75 EWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL------SLELAVH 148 (720)
Q Consensus 75 ~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~------~~~~~~~ 148 (720)
..+++.|+|.+..+....+++.+.+.+++.|.++.... +. .. +......++. ++|.|++.+ .......
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~-l~--~~-~~~~~~~~l~--~~D~iiigsP~y~~~~~~~~k~ 328 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLE-MT--SS-DITKVALHTY--DSGAVAFASPTLNNTMMPSVAA 328 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE-GG--GC-CHHHHHHHHH--TCSEEEEECCCBTTBCCHHHHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEE-cC--cC-CHHHHHHHHH--hCCEEEEEcCccCcCchHHHHH
Confidence 36799999987765545567888888888887654332 21 12 5555555665 577777754 3356777
Q ss_pred HHHHHHHcCC-CCCCeEEEEeCc
Q 043468 149 LFEKANKMKM-MEKDYIWITTDA 170 (720)
Q Consensus 149 ~l~~a~~~g~-~~~~~~~i~~~~ 170 (720)
|+.......+ .++....+++..
T Consensus 329 fld~l~~~~~~~~K~~~~~~t~g 351 (414)
T 2q9u_A 329 ALNYVRGLTLIKGKPAFAFGAFG 351 (414)
T ss_dssp HHHHHHHHTTTTTSBEEEEEEES
T ss_pred HHHHHHhhcccCCCEEEEEEecC
Confidence 8877766555 444444444433
No 244
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=57.05 E-value=16 Score=34.69 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=54.4
Q ss_pred CCeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHH
Q 043468 75 EWHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKA 153 (720)
Q Consensus 75 ~~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a 153 (720)
.-++|+++..+.. ..-..+.+.+++.+++.|.++..... ..+.......++.+.+.++|.|++..... ...++.+
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l 81 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA--NADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEI 81 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC--TTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHH
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHH
Confidence 3467899887543 22233478889999999998766432 12221455677888888999998877544 6677778
Q ss_pred HHcCC
Q 043468 154 NKMKM 158 (720)
Q Consensus 154 ~~~g~ 158 (720)
.+.|.
T Consensus 82 ~~~~i 86 (276)
T 3jy6_A 82 LHQQM 86 (276)
T ss_dssp HTTSS
T ss_pred HHCCC
Confidence 77776
No 245
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=56.97 E-value=15 Score=30.91 Aligned_cols=89 Identities=12% Similarity=0.231 Sum_probs=55.2
Q ss_pred CCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcc---cHHHHHHHhhcCCCeEEEEEcCHHHHHHHH
Q 043468 74 WEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSS---RLSEELEKLKGGQCRVFVVHLSLELAVHLF 150 (720)
Q Consensus 74 ~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~---d~~~~l~~i~~~~~~vvil~~~~~~~~~~l 150 (720)
+..++|++|..++..|.- -..+-+.+.+.|.+|..... . ...- ..-+-+.++. ..+|++++....+....++
T Consensus 12 ~~p~~IavIGaS~~~g~~--G~~~~~~L~~~G~~V~~vnp-~-~~~i~G~~~~~s~~el~-~~vDlvii~vp~~~v~~v~ 86 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKY--GNIILKDLLSKGFEVLPVNP-N-YDEIEGLKCYRSVRELP-KDVDVIVFVVPPKVGLQVA 86 (138)
T ss_dssp --CCEEEEETCCSCTTSH--HHHHHHHHHHTTCEEEEECT-T-CSEETTEECBSSGGGSC-TTCCEEEECSCHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCCH--HHHHHHHHHHCCCEEEEeCC-C-CCeECCeeecCCHHHhC-CCCCEEEEEeCHHHHHHHH
Confidence 346789999776665433 35566667788887443321 1 1110 1111122332 3689999999999999999
Q ss_pred HHHHHcCCCCCCeEEEEeCc
Q 043468 151 EKANKMKMMEKDYIWITTDA 170 (720)
Q Consensus 151 ~~a~~~g~~~~~~~~i~~~~ 170 (720)
+++.+.|. +.+|+.++.
T Consensus 87 ~~~~~~g~---~~i~~~~~~ 103 (138)
T 1y81_A 87 KEAVEAGF---KKLWFQPGA 103 (138)
T ss_dssp HHHHHTTC---CEEEECTTS
T ss_pred HHHHHcCC---CEEEEcCcc
Confidence 99988887 568887654
No 246
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=55.93 E-value=49 Score=34.19 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=60.3
Q ss_pred HHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcc-cHHHHHHHhhcCCCeEEEEEc--
Q 043468 65 KAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSS-RLSEELEKLKGGQCRVFVVHL-- 141 (720)
Q Consensus 65 ~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~-d~~~~l~~i~~~~~~vvil~~-- 141 (720)
..+.++++.+|.+++.|+++..... .+.+.+.+.+++.|+++.. ..+...... +.....+.+++ ++|+||-.+
T Consensus 80 ~~l~~~l~~~g~~rvlIVtd~~~~~--~~~~~v~~~L~~~gi~~~~-~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGG 155 (450)
T 1ta9_A 80 TRSYMYVKKWATKSAVVLADQNVWN--ICANKIVDSLSQNGMTVTK-LVFGGEASLVELDKLRKQCPD-DTQVIIGVGGG 155 (450)
T ss_dssp GGHHHHHTTTCSSEEEEEEEHHHHH--HTHHHHHHHHHHTTCEEEE-EEECSCCCHHHHHHHHTTSCT-TCCEEEEEESH
T ss_pred HHHHHHHHhcCCCEEEEEECccHHH--HHHHHHHHHHHHCCCeEEE-EeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCc
Confidence 3456667777766999998765432 2478999999999998743 233333222 55666666666 899988654
Q ss_pred CHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 043468 142 SLELAVHLFEKANKMKMMEKDYIWITTD 169 (720)
Q Consensus 142 ~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 169 (720)
+.-|+..++.. ..++ .++-|-|.
T Consensus 156 SviD~AK~iA~--~~gi---P~I~IPTT 178 (450)
T 1ta9_A 156 KTMDSAKYIAH--SMNL---PSIICPTT 178 (450)
T ss_dssp HHHHHHHHHHH--HTTC---CEEEEESS
T ss_pred HHHHHHHHHHH--hcCC---CEEEEeCC
Confidence 34566666653 2344 45555554
No 247
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=55.68 E-value=7.7 Score=37.24 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=58.8
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHH-HHHHhCCCeEEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIA-AIVQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~-~~l~~~~~~~v~ii~~ 84 (720)
+.++.+|+-+.++..+.++..+-+..++|+|+.. ++.+ ..++..+.++|+|+..
T Consensus 72 ~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~-------------------------epa~~~A~~~~~~~rIgVlaT 126 (273)
T 2oho_A 72 TQNVKMIVFACNTATAVAWEEVKAALDIPVLGVV-------------------------LPGASAAIKSTTKGQVGVIGT 126 (273)
T ss_dssp TTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESH-------------------------HHHHHHHHHHCSSSEEEEEEC
T ss_pred HCCCCEEEEeCchHhHHHHHHHHHhCCCCEEecc-------------------------HHHHHHHHHhcCCCeEEEEEC
Confidence 5677777766666554445555566677777521 1212 2233456678888877
Q ss_pred cCCCcccCcHHHHHHHHHHc--CcEEEEEEe------cCCCCc------ccHHHHHHHhhcCCCeEEEEEcCH
Q 043468 85 DIDSSATGILPHLSDALREA--GAEIIHVLA------LPHFPS------SRLSEELEKLKGGQCRVFVVHLSL 143 (720)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~--g~~v~~~~~------~~~~~~------~d~~~~l~~i~~~~~~vvil~~~~ 143 (720)
...- . ...+++.+++. |+++..... +..+.. ..+...++.+.+. +|+||+.|..
T Consensus 127 ~~T~---~-~~~y~~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~iVLGCTh 194 (273)
T 2oho_A 127 PMTV---A-SDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLVGK-IDTLVLGCTH 194 (273)
T ss_dssp HHHH---H-HTHHHHHHHHHCTTSEEEEEECTTHHHHHCC-----HHHHHHHHHHHTTTTTS-CSEEEECSTT
T ss_pred chhh---c-chHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEcCCC
Confidence 6431 0 23456666666 777664211 111111 0233444555555 9999998854
No 248
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=55.55 E-value=25 Score=33.52 Aligned_cols=116 Identities=10% Similarity=0.109 Sum_probs=63.5
Q ss_pred CCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHH-HHHhCCCeEEEEEEEc
Q 043468 7 QKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAA-IVQSWEWHQVTVIYED 85 (720)
Q Consensus 7 ~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~-~l~~~~~~~v~ii~~~ 85 (720)
.++.+|+=+.+++.+.++..+-+..++|+|+.. ++.+. .++..+.++|+|+...
T Consensus 65 ~g~d~iViACNTas~~~l~~lr~~~~iPVigii-------------------------epa~~~A~~~~~~~rIgVlaT~ 119 (272)
T 1zuw_A 65 HHIKMLVIACNTATAIALDDIQRSVGIPVVGVI-------------------------QPGARAAIKVTDNQHIGVIGTE 119 (272)
T ss_dssp SCCSEEEECCHHHHHHHHHHHHHHCSSCEEESH-------------------------HHHHHHHHHHCSSSEEEEEECH
T ss_pred cCCCEEEEeCchhhHHHHHHHHHHCCCCEEccc-------------------------HHHHHHHHHhcCCCEEEEEECh
Confidence 677777766666554455555566677777521 12221 2233466789998775
Q ss_pred CCCcccCcHHHHHHHHHHc--CcEEEEEEe------cCCCCc------ccHHHHHHHhhcCCCeEEEEEcCH-HHHHHHH
Q 043468 86 IDSSATGILPHLSDALREA--GAEIIHVLA------LPHFPS------SRLSEELEKLKGGQCRVFVVHLSL-ELAVHLF 150 (720)
Q Consensus 86 ~~~g~~~~~~~~~~~~~~~--g~~v~~~~~------~~~~~~------~d~~~~l~~i~~~~~~vvil~~~~-~~~~~~l 150 (720)
..-- ...+++.+++. |.+|..... +..+.. ..+..+++.+++.++|+||+.|.. ..+...+
T Consensus 120 ~T~~----s~~y~~~i~~~~~~~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVLGCTh~pll~~~i 195 (272)
T 1zuw_A 120 NTIK----SNAYEEALLALNPDLKVENLACPLLVPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLILGCTHYPILKEAI 195 (272)
T ss_dssp HHHH----TTHHHHHHHHHCTTCEEEEEECTTHHHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEEESTTGGGGHHHH
T ss_pred hhhh----hhHHHHHHHHhCCCCEEEeccCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHH
Confidence 4321 12345555554 666543221 112221 134556667777789999999854 3333333
Q ss_pred H
Q 043468 151 E 151 (720)
Q Consensus 151 ~ 151 (720)
+
T Consensus 196 ~ 196 (272)
T 1zuw_A 196 Q 196 (272)
T ss_dssp H
T ss_pred H
Confidence 3
No 249
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=55.47 E-value=21 Score=29.36 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHc
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKM 156 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~ 156 (720)
...+++.+++.|.++... . +....+..+++..+|+|++.. ...+...++++.++.
T Consensus 19 ~~~l~~~l~~~g~~v~~~---~-----~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 75 (140)
T 3grc_A 19 ARLLNLMLEKGGFDSDMV---H-----SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRD 75 (140)
T ss_dssp HHHHHHHHHHTTCEEEEE---C-----SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCeEEEE---C-----CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 678889999999875332 1 566677777888899999865 456677788888773
No 250
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=55.08 E-value=39 Score=31.70 Aligned_cols=94 Identities=9% Similarity=-0.002 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCCCeEEEEEEEcC------------CCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhc
Q 043468 64 MKAIAAIVQSWEWHQVTVIYEDI------------DSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKG 131 (720)
Q Consensus 64 ~~~~~~~l~~~~~~~v~ii~~~~------------~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~ 131 (720)
....++.++..|.+.|-+..... ...... .+.+++.+++.|+++...........+++...+...+.
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~ 102 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQT-QKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKA 102 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHH-HHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHH-HHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHH
Confidence 45567777888988887764321 111122 68999999999999887766543333377778888787
Q ss_pred CCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468 132 GQCRVFVVHLSLELAVHLFEKANKMKM 158 (720)
Q Consensus 132 ~~~~vvil~~~~~~~~~~l~~a~~~g~ 158 (720)
-+++.|++....+....+...|.+.|+
T Consensus 103 lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 103 MDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred cCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 888888887655555666666666665
No 251
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=54.93 E-value=21 Score=34.49 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=63.9
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHH-HHHhCCCeEEEEEEE
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAA-IVQSWEWHQVTVIYE 84 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~-~l~~~~~~~v~ii~~ 84 (720)
+.++.+|+=+.+++.+.++..+-+..++|+|+.. ++.+. .+...+.++|+|+..
T Consensus 84 ~~g~d~IVIACNTas~~~l~~lr~~~~iPVigii-------------------------epa~~~A~~~~~~~rIgVLaT 138 (290)
T 2vvt_A 84 KKRIKMLVIACNTATAVALEEIKAALPIPVVGVI-------------------------LPGARAAVKVTKNNKIGVIGT 138 (290)
T ss_dssp TTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESS-------------------------HHHHHHHHHHCSSSEEEEEEC
T ss_pred HCCCCEEEEeCcchhHHHHHHHHHhCCCCEEccc-------------------------HHHHHHHHHhcCCCEEEEEeC
Confidence 5678888776666654555556666778887521 11111 223345678888876
Q ss_pred cCCCcccCcHHHHHHHHHHc--CcEEEEEEecC-------CCC---c---ccHHHHHHHhhcCCCeEEEEEcCH-HHHHH
Q 043468 85 DIDSSATGILPHLSDALREA--GAEIIHVLALP-------HFP---S---SRLSEELEKLKGGQCRVFVVHLSL-ELAVH 148 (720)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~~~--g~~v~~~~~~~-------~~~---~---~d~~~~l~~i~~~~~~vvil~~~~-~~~~~ 148 (720)
....- ...+++.+++. +.+|... ..+ .+. . ..+...++.+.+.++|+||+.|.. ..+..
T Consensus 139 ~~T~~----s~~y~~~l~~~~~~~~v~~~-~~~~lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLGCTh~p~l~~ 213 (290)
T 2vvt_A 139 LGTIK----SASYEIAIKSKAPAIEVTSL-ACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRP 213 (290)
T ss_dssp HHHHH----TTHHHHHHHTTCTTSEEEEE-ECTTHHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEECSTTGGGGHH
T ss_pred cHhhh----hHHHHHHHHHhCCCCEEEec-cCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCcCHHHHHH
Confidence 55421 12355566655 5555433 211 111 1 035556666767789999998854 33333
Q ss_pred HHH
Q 043468 149 LFE 151 (720)
Q Consensus 149 ~l~ 151 (720)
.++
T Consensus 214 ~i~ 216 (290)
T 2vvt_A 214 VIQ 216 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 343
No 252
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=54.77 E-value=16 Score=23.52 Aligned_cols=23 Identities=4% Similarity=-0.282 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 043468 689 SGGISTIALVIFLWRCNWKINEN 711 (720)
Q Consensus 689 l~~g~~ls~~v~~~E~~~~~~~~ 711 (720)
..+|+++.+++.+.-.+|.++|+
T Consensus 17 ~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 17 AVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhheehhh
Confidence 33443333333333344444333
No 253
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=54.44 E-value=28 Score=33.57 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=53.9
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc-CHHHHHHHHHHHH
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL-SLELAVHLFEKAN 154 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~-~~~~~~~~l~~a~ 154 (720)
.+|+++..+.. ..-..+.+.+++.+++.|.++..... .+.......++.+.+.++|.|++.. ........++.+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~ 79 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR 79 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC---CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC---CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHH
Confidence 47888876543 22233478889999999998764432 2222556677788788999988865 4455566788888
Q ss_pred HcCC
Q 043468 155 KMKM 158 (720)
Q Consensus 155 ~~g~ 158 (720)
+.|.
T Consensus 80 ~~~i 83 (306)
T 8abp_A 80 GYDM 83 (306)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 8876
No 254
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=53.30 E-value=23 Score=33.95 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=54.3
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHH----HHHHHHH
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLE----LAVHLFE 151 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~----~~~~~l~ 151 (720)
++|+++..+.. ..-..+.+.+++.+++.|.++.....- .+.......++.+.+.++|.|++..... .....++
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 93 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN--NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYL 93 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT--TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC--CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHH
Confidence 78999987643 222345889999999999987665322 2221455677777788999988865322 3456777
Q ss_pred HHHHcCC
Q 043468 152 KANKMKM 158 (720)
Q Consensus 152 ~a~~~g~ 158 (720)
.+.+.|.
T Consensus 94 ~~~~~~i 100 (298)
T 3tb6_A 94 NLEKNGI 100 (298)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 7888776
No 255
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=53.23 E-value=30 Score=27.68 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...++..+++.|.++... . +....++.+++..+|+|++.. .+.+...+++..++..
T Consensus 15 ~~~l~~~l~~~g~~v~~~---~-----~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 15 RKIVSFNLKKEGYEVIEA---E-----NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHCCcEEEEe---C-----CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 678888888999876532 1 556677788888999999865 4556778888887654
No 256
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=53.11 E-value=1.3e+02 Score=29.17 Aligned_cols=83 Identities=7% Similarity=-0.156 Sum_probs=53.3
Q ss_pred EecCcchHHHHHhcCcccEEEechhHHHHHHHhcCCCcEee-CC-eeecCceeeEecCCCCChHHHHHHHhcccccCcHH
Q 043468 574 YSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVA-GP-TYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLR 651 (720)
Q Consensus 574 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~~ 651 (720)
...+..+..+.+.+|+++..+..............+ +..+ +. -......+++++++++-.+.-...|..+.......
T Consensus 215 ~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~-~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~q~ 293 (351)
T 4edp_A 215 TYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPE-VINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEVQE 293 (351)
T ss_dssp EECCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-CEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHH
T ss_pred ccCChHHHHHHHHcCCEEEEecCcHHHHHHHhcCCC-eeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHHHHH
Confidence 334567788899999999998876665555444332 3322 21 11223447899999998888778887777665555
Q ss_pred HHHHHh
Q 043468 652 ELETSM 657 (720)
Q Consensus 652 ~~~~~~ 657 (720)
.+.+..
T Consensus 294 ~~~~~~ 299 (351)
T 4edp_A 294 KTAKAL 299 (351)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555443
No 257
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=52.95 E-value=30 Score=30.71 Aligned_cols=66 Identities=9% Similarity=-0.048 Sum_probs=42.2
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+..+++..+.++. +.++++. . .. .+.+|.+|++|+++....... ..+. +.++....+++++++..
T Consensus 20 ~~l~~~l~~f~~~~P~v~l~i~--~-~~----~~~~l~~g~~D~~i~~~~~~~---~~~~-~~~l~~~~~~~v~~~~~ 86 (213)
T 3hhf_B 20 HLLAPLAAKFNERYPHIRLSLV--S-SE----GYINLIERKVDIALRAGELDD---SGLR-ARHLFDSRFRVIASPEY 86 (213)
T ss_dssp HTHHHHHHHHHHHCTTEEEEEE--C-CS----TTHHHHTTSSSEEEECC--CC---SSEE-EEEEEEECEEEEECHHH
T ss_pred HHHHHHHHHHHHHCCCcEEEEE--e-CC----cHHHHHhCCccEEEEEecCCC---ccce-EEeeecceEEEEeCHHH
Confidence 35677888888876 4554444 2 11 234589999999986443322 2232 46888999999997653
No 258
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=52.76 E-value=1.6e+02 Score=28.51 Aligned_cols=76 Identities=8% Similarity=-0.031 Sum_probs=45.7
Q ss_pred chHHHHHhcCcccEEEechhHHHHHHHhcCCCcEee-C-CeeecCceeeEecCCCCChHHHHHHHhcccccCcHHHHHH
Q 043468 579 GDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVA-G-PTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELET 655 (720)
Q Consensus 579 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~~~~~~ 655 (720)
.+....+.+|++...+.-............+ +..+ + +-.....-+++++|+++-.+.=-+.|.-+.+......+.+
T Consensus 195 ~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~-~~~~~p~eG~~~~~~~~~I~k~a~n~e~A~~fi~fllspe~q~~~~~ 272 (333)
T 4gl0_A 195 DEIKLLMADNEAGVAVTFSGEAAEMLSENED-LEYVIPKDGSNLWFDNMVIPKTAKNVDGAHKFINFMLKPENAAINAE 272 (333)
T ss_dssp TTHHHHTSCC-CCEEEEEHHHHHHHHHHCTT-EEEECCSSCEEEEEEEEECBTTCSCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred hhhhhhhhccchheehhhhHHHHHHHhhccc-cccccCCCCCccccceEEEEcCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 5667788999999888866655554444433 3322 2 2122223378999999977777777766665544444443
No 259
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=52.54 E-value=19 Score=34.29 Aligned_cols=71 Identities=8% Similarity=-0.031 Sum_probs=47.1
Q ss_pred EeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccce-eeeeecccccccceEEEEeccc
Q 043468 379 FSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRC-QYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 379 ~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~-~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
+..+++..+.++. +.++++.. ++...++.+|.+|++|+++.......++. ..+. ..|+....+++++++..
T Consensus 41 ~l~~~l~~f~~~~P~i~v~i~~----~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~~~ 113 (290)
T 1twy_A 41 IMDVLAEKYNQQHPETYVAVQG----VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQAN 113 (290)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEE----SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECTTC
T ss_pred HHHHHHHHHHhhCCCceEEEEe----cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECCCC
Confidence 3456788888877 66654442 34678999999999999986443322110 1232 35788888899888764
No 260
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=52.40 E-value=34 Score=33.39 Aligned_cols=81 Identities=11% Similarity=0.048 Sum_probs=54.3
Q ss_pred CeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc-CHHHHHHHHHHH
Q 043468 76 WHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL-SLELAVHLFEKA 153 (720)
Q Consensus 76 ~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~-~~~~~~~~l~~a 153 (720)
-++|+++..+.. ..-..+.+.+++.+++.|.++.... ...+.......++.+.+.++|.|++.. ........++++
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY--ADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE--CTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee--CCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 367899887643 2223347889999999999876554 222221345567777777899988765 444556778888
Q ss_pred HHcCC
Q 043468 154 NKMKM 158 (720)
Q Consensus 154 ~~~g~ 158 (720)
.+.|.
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88876
No 261
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=52.14 E-value=24 Score=35.27 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=58.5
Q ss_pred HHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCC-cccHHHHHHHhhcCCCeEEEEEcCH
Q 043468 65 KAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFP-SSRLSEELEKLKGGQCRVFVVHLSL 143 (720)
Q Consensus 65 ~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~d~~~~l~~i~~~~~~vvil~~~~ 143 (720)
..+.++++.+|.+|+.|+++... .++.+.+.+.+++.++.+. ....+.. .+.....++.+++.++|+||-.+.|
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~---~~~~~~v~~~L~~~~~~v~--~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 97 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQ---KGDAEALASRLGRLAAGVF--SEAAMHTPVEVTKTAVEAYRAAGADCVVSLGGG 97 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGG---HHHHHHHHHHHGGGEEEEE--CCCCTTCBHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred HHHHHHHHHhCCCEEEEEecCch---hhHHHHHHHHHhhCCcEEe--cCcCCCCcHHHHHHHHHHHhccCCCEEEEeCCc
Confidence 34667788888899999987553 2347888888888665432 1112111 1266777778888899998765543
Q ss_pred --HHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 043468 144 --ELAVHLFEKANKMKMMEKDYIWITTDA 170 (720)
Q Consensus 144 --~~~~~~l~~a~~~g~~~~~~~~i~~~~ 170 (720)
-|+..++.. ..++ .++-|-|..
T Consensus 98 s~iD~aK~iA~--~~~~---p~i~IPTTa 121 (353)
T 3hl0_A 98 STTGLGKAIAL--RTDA---AQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHH--HHCC---EEEEEECSS
T ss_pred HHHHHHHHHHh--ccCC---CEEEEeCCc
Confidence 455555543 2343 344444444
No 262
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=51.86 E-value=83 Score=29.55 Aligned_cols=88 Identities=10% Similarity=-0.030 Sum_probs=60.1
Q ss_pred CeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc----CHHHHHHHHH
Q 043468 76 WHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL----SLELAVHLFE 151 (720)
Q Consensus 76 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~----~~~~~~~~l~ 151 (720)
..+|.+....++...-+ ..-+...++.+|++|..--.-. .....+..+++.++|+|.+.+ .......+++
T Consensus 123 ~~~vlla~~~gd~HdiG-~~iva~~L~~~G~~Vi~LG~~v-----p~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~ 196 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIG-KNIVTALLRANGYNVVDLGRDV-----PAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVND 196 (258)
T ss_dssp SCEEEEEECTTCCCCHH-HHHHHHHHHHTTCEEEEEEEEC-----CSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHH
T ss_pred CCeEEEEeCCCCccHHH-HHHHHHHHHHCCCEEEECCCCC-----CHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHH
Confidence 34676666666665556 7888889999999987654321 334566677777899999876 3456778888
Q ss_pred HHHHcCCCCCCeEEEEeCcc
Q 043468 152 KANKMKMMEKDYIWITTDAF 171 (720)
Q Consensus 152 ~a~~~g~~~~~~~~i~~~~~ 171 (720)
++++.+.. -.+++++...
T Consensus 197 ~l~~~~~~--~~v~vGG~~~ 214 (258)
T 2i2x_B 197 MLLENGIK--IPFACGGGAV 214 (258)
T ss_dssp HHHTTTCC--CCEEEESTTC
T ss_pred HHHhcCCC--CcEEEECccC
Confidence 88888874 2355554443
No 263
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=51.71 E-value=15 Score=34.89 Aligned_cols=81 Identities=9% Similarity=-0.002 Sum_probs=51.0
Q ss_pred EEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCC-CeEEEEEcC-HHHHHHHHHHHH
Q 043468 78 QVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQ-CRVFVVHLS-LELAVHLFEKAN 154 (720)
Q Consensus 78 ~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~-~~vvil~~~-~~~~~~~l~~a~ 154 (720)
+|+++..+.. .....+.+.+++.+++.|.++.....-...+.......++.+.+.+ +|.|++... .......++.+.
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~ 81 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYR 81 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHH
Confidence 5777775433 2223347889999999998876432111111113445667777778 999888663 445566788888
Q ss_pred HcCC
Q 043468 155 KMKM 158 (720)
Q Consensus 155 ~~g~ 158 (720)
+.|.
T Consensus 82 ~~~i 85 (276)
T 3ksm_A 82 ARNI 85 (276)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 8876
No 264
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=51.54 E-value=12 Score=36.45 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=41.3
Q ss_pred ccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 043468 503 QTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLT 551 (720)
Q Consensus 503 ~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~ 551 (720)
.+.+++|++. .+.|+. |.+..+|++++++.++++.+.....+.+...+.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888887 566765 889999999999999999999999988887764
No 265
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=51.43 E-value=1.1e+02 Score=29.52 Aligned_cols=114 Identities=7% Similarity=0.012 Sum_probs=74.6
Q ss_pred HHHHHhhccC-CCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHH
Q 043468 22 SSVAEIASKK-QIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDA 100 (720)
Q Consensus 22 ~~~~~~~~~~-~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~ 100 (720)
..+...+++. ++.+|.|.+..-.... ....-..|. .....-+|+++..+... ...+.+.
T Consensus 112 ~~l~~~a~~~~gi~liGPnc~Gii~p~---~~~~~~~~~------------~~~~~G~va~vSqSG~l-----~~~~~~~ 171 (305)
T 2fp4_A 112 VRVKHRLLRQGKTRLIGPNCPGVINPG---ECKIGIMPG------------HIHKKGRIGIVSRSGTL-----TYEAVHQ 171 (305)
T ss_dssp HHHHHHHTTCSSCEEECSSSCEEEETT---TEEEESSCG------------GGCCEEEEEEEESCSHH-----HHHHHHH
T ss_pred HHHHHHHHhcCCcEEEeCCCCeEeccc---ccceeeccc------------cCCCCCCEEEEecchHH-----HHHHHHH
Confidence 3677888888 8988877764221111 111112222 12344679999765543 5677778
Q ss_pred HHHcCcEEEEEEecCCCC--cccHHHHHHHhhcC-CCeEEEEEcCH-----HHHHHHHHHHHH
Q 043468 101 LREAGAEIIHVLALPHFP--SSRLSEELEKLKGG-QCRVFVVHLSL-----ELAVHLFEKANK 155 (720)
Q Consensus 101 ~~~~g~~v~~~~~~~~~~--~~d~~~~l~~i~~~-~~~vvil~~~~-----~~~~~~l~~a~~ 155 (720)
+.+.|+-+...+.+-... ..++...++.+.+. +.++|+++... .++..|++++++
T Consensus 172 ~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 172 TTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNS 234 (305)
T ss_dssp HHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHHHHHHHHSC
T ss_pred HHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhhHHHHHHHHHHH
Confidence 888887777766665443 12888888888654 88999998854 579999998765
No 266
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=51.38 E-value=10 Score=35.47 Aligned_cols=74 Identities=9% Similarity=0.031 Sum_probs=51.1
Q ss_pred EEEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccce---eeeeecccccccceEEEEecc
Q 043468 377 GGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRC---QYADFTHPYTESGLVMIFPVQ 453 (720)
Q Consensus 377 ~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~---~~~~fs~p~~~~~~~~~v~~~ 453 (720)
.|+.-+|+..+.++.+.++++.... -..+++++.+|.+|+.+..-....+.. ....-..|+....+++++|+.
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~g----Sg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVlV~P~~ 93 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAAG----TGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVIVGPKA 93 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEEC----HHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEEEECTT
T ss_pred hhHHHHHHHHHHHHhCceEEEEEcC----hHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEEEEeCC
Confidence 3677789999998888776555433 367889999999999976543332221 111224678888899999887
Q ss_pred c
Q 043468 454 K 454 (720)
Q Consensus 454 ~ 454 (720)
+
T Consensus 94 ~ 94 (237)
T 3muq_A 94 D 94 (237)
T ss_dssp C
T ss_pred C
Confidence 5
No 267
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=50.79 E-value=28 Score=34.31 Aligned_cols=82 Identities=9% Similarity=0.055 Sum_probs=50.3
Q ss_pred eEEEEEEEc--CCCcccCcHHHHHHHHHHcCcEEEEEEecCC--CCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHH
Q 043468 77 HQVTVIYED--IDSSATGILPHLSDALREAGAEIIHVLALPH--FPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEK 152 (720)
Q Consensus 77 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~--~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~ 152 (720)
++|+++..+ ++..-..+.+.+++.+++.|.++........ .+.......++.+.+.++|.|++..........++.
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 478888876 2322233478889999999987654421121 122134456777777899999884443333455666
Q ss_pred HHHcCC
Q 043468 153 ANKMKM 158 (720)
Q Consensus 153 a~~~g~ 158 (720)
+.+.+.
T Consensus 124 ~~~~~i 129 (342)
T 1jx6_A 124 VLDSTN 129 (342)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 776665
No 268
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=50.78 E-value=38 Score=28.48 Aligned_cols=56 Identities=18% Similarity=0.104 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...+++.+++.|..+... . +....+..+++..+|+|++.. .+.+...+++..++..
T Consensus 20 ~~~l~~~L~~~g~~v~~~---~-----~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 20 AEHLKHILEETGYQTEHV---R-----NGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHTTTCEEEEE---S-----SHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHCCCEEEEe---C-----CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 788889999999875332 1 666778888888999999976 4556777888888764
No 269
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=50.40 E-value=14 Score=35.29 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=63.6
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED 85 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~ 85 (720)
+.++.+|+=+.+++.+.++-.+-+..++|+|+.. -.++...++..+.++|+|+...
T Consensus 65 ~~g~~~IVIACNTa~~~al~~lr~~~~iPvigii------------------------~pa~~~A~~~~~~~~IGVLaT~ 120 (269)
T 3ist_A 65 DRGIKMLVIACNTATAAALYDIREKLDIPVIGVI------------------------QPGSRAALKATRNNKIGVLGTL 120 (269)
T ss_dssp HTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESH------------------------HHHHHHHHHHCSSSEEEEEECH
T ss_pred HCCCCEEEEeCCCccHHHHHHHHHhcCCCEEeec------------------------HHHHHHHHHHcCCCeEEEEecc
Confidence 5677777766666555455556666678877421 0122222334456788888775
Q ss_pred CCCcccCcHHHHHHHHHHc--CcEEEEEEe------cCCCCc------ccHHHHHHHhhcCCCeEEEEEcCH-HHHHHHH
Q 043468 86 IDSSATGILPHLSDALREA--GAEIIHVLA------LPHFPS------SRLSEELEKLKGGQCRVFVVHLSL-ELAVHLF 150 (720)
Q Consensus 86 ~~~g~~~~~~~~~~~~~~~--g~~v~~~~~------~~~~~~------~d~~~~l~~i~~~~~~vvil~~~~-~~~~~~l 150 (720)
..-- ...+++.+++. +.+|..... +..+.. ..+..+++.+++.++|.||+.|.. .-....+
T Consensus 121 ~Ti~----s~~y~~~i~~~~~~~~v~~~~~~~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iVLGCTh~pll~~~i 196 (269)
T 3ist_A 121 GTVE----SMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPII 196 (269)
T ss_dssp HHHH----HTHHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTTSHHHHHHHHHHHGGGGGSCCCEEEECSTTGGGGHHHH
T ss_pred chhh----HHHHHHHHHHhCCCCEEeccCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHH
Confidence 5320 23444555554 344433211 111111 135566777777899999998854 3334444
Q ss_pred HH
Q 043468 151 EK 152 (720)
Q Consensus 151 ~~ 152 (720)
++
T Consensus 197 ~~ 198 (269)
T 3ist_A 197 EN 198 (269)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 270
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=50.32 E-value=22 Score=34.42 Aligned_cols=86 Identities=6% Similarity=0.086 Sum_probs=50.5
Q ss_pred HHHhCCCeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHH
Q 043468 70 IVQSWEWHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVH 148 (720)
Q Consensus 70 ~l~~~~~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~ 148 (720)
-++..+-+.|+++..+.. ..-..+.+.+++.+++.|.++..... . .+.......++.+.+.++|.||+.........
T Consensus 9 ~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~ 86 (303)
T 3kke_A 9 ALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQI-D-APPRGTQQLSRLVSEGRVDGVLLQRREDFDDD 86 (303)
T ss_dssp --------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEEC-C-STTHHHHHHHHHHHSCSSSEEEECCCTTCCHH
T ss_pred HHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeC-C-CChHHHHHHHHHHHhCCCcEEEEecCCCCcHH
Confidence 344444467898887543 22233478899999999998765432 1 22214566788888899999888654322222
Q ss_pred HHHHHHHcCC
Q 043468 149 LFEKANKMKM 158 (720)
Q Consensus 149 ~l~~a~~~g~ 158 (720)
.++.+.+ +.
T Consensus 87 ~~~~l~~-~i 95 (303)
T 3kke_A 87 MLAAVLE-GV 95 (303)
T ss_dssp HHHHHHT-TS
T ss_pred HHHHHhC-CC
Confidence 5666666 65
No 271
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=49.98 E-value=45 Score=29.32 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=44.6
Q ss_pred CCCeEEEEEEEcCC----------CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC-CCeEEEEEc
Q 043468 74 WEWHQVTVIYEDID----------SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG-QCRVFVVHL 141 (720)
Q Consensus 74 ~~~~~v~ii~~~~~----------~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~-~~~vvil~~ 141 (720)
+..-+++||...|. ..+.. ...+.+.+++.|.++.....++.... .+.+.+++..+. ++|+|+..+
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn-~~~L~~~l~~~G~~v~~~~iv~Dd~~-~I~~al~~a~~~~~~DlVittG 89 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDES-GDIIKQLLIENGHKIIGYSLVPDDKI-KILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHH-HHHHHHHHHHTTCEEEEEEEECSCHH-HHHHHHHHHHTCTTCCEEEEES
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehH-HHHHHHHHHHCCCEEEEEEEeCCCHH-HHHHHHHHHHhcCCCCEEEECC
Confidence 44568999988752 11222 56788888999999888777665433 666677666544 589988754
No 272
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=49.67 E-value=46 Score=31.71 Aligned_cols=83 Identities=8% Similarity=0.109 Sum_probs=50.3
Q ss_pred HHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHH
Q 043468 71 VQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLF 150 (720)
Q Consensus 71 l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l 150 (720)
++..+-+.|+++.+.++..-..+.+.+++.+++.|.++.....-. .. +....++.+.+.++|.|++.....+. ..+
T Consensus 7 L~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~-~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 82 (289)
T 3k9c_A 7 LRQASSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAP--SR-AEKVAVQALMRERCEAAILLGTRFDT-DEL 82 (289)
T ss_dssp ------CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBT--TB-CHHHHHHHHTTTTEEEEEEETCCCCH-HHH
T ss_pred hhcCCCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCC--CH-HHHHHHHHHHhCCCCEEEEECCCCCH-HHH
Confidence 444445688888832222223347889999999999877654322 22 45677888888899999887633222 455
Q ss_pred HHHHHcCC
Q 043468 151 EKANKMKM 158 (720)
Q Consensus 151 ~~a~~~g~ 158 (720)
+.+.+ +.
T Consensus 83 ~~~~~-~i 89 (289)
T 3k9c_A 83 GALAD-RV 89 (289)
T ss_dssp HHHHT-TS
T ss_pred HHHHc-CC
Confidence 55655 65
No 273
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=48.96 E-value=83 Score=30.28 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=44.4
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+...++..+.++. +.+ +..... +...++.+|.+|++|+++......+ ..+. +.|+....+++++++..
T Consensus 118 ~~l~~~l~~f~~~~P~v~--l~l~~~--~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~h 187 (315)
T 1uth_A 118 YFMPPLMEALAQRAPHIQ--ISTLRP--NAGNLKEDMESGAVDLALGLLPELQ---TGFF-QRRLFRHRYVCMFRKDH 187 (315)
T ss_dssp HHHHHHHHHHHHHCTTCE--EEEECT--TSSCHHHHHHHTSCCEEEECCTTCC---TTEE-EEEEEEECEEEEEETTC
T ss_pred HHHHHHHHHHHHHCCCcE--EEEEeC--CcccHHHHHHCCCCCEEEecCCCCC---CCce-EEEeeccceEEEEeCCC
Confidence 34567778887776 445 443332 2356889999999999985432211 2222 35788888888887664
No 274
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=48.82 E-value=5.7 Score=37.97 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=18.5
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEe
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLS 37 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is 37 (720)
+.++.+|+=+.++... .+-.+-+..++|+|+
T Consensus 97 ~~Gad~IVIaCNTah~-~l~~lr~~~~iPvig 127 (268)
T 3s81_A 97 DAGAECIVIPCNTAHY-WFDDLQNVAKARMIS 127 (268)
T ss_dssp HTTCSEEECSCSGGGG-GHHHHHHHCSSEEEC
T ss_pred HcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEc
Confidence 5667777766665544 344444556777774
No 275
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=48.38 E-value=12 Score=35.38 Aligned_cols=80 Identities=13% Similarity=0.207 Sum_probs=52.4
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHH
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANK 155 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~ 155 (720)
++|+++..+.. ..-..+.+.+++.+++.|.++..... ..+.......++.+.+.++|.|++..........++.+.+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS--DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQD 80 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHH
Confidence 57888887643 22233478889999999998766532 1222145567777878899998886543223556677777
Q ss_pred cCC
Q 043468 156 MKM 158 (720)
Q Consensus 156 ~g~ 158 (720)
.|.
T Consensus 81 ~~i 83 (272)
T 3o74_A 81 KGL 83 (272)
T ss_dssp TTC
T ss_pred cCC
Confidence 776
No 276
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=48.28 E-value=33 Score=33.77 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=51.0
Q ss_pred CCCeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHH
Q 043468 74 WEWHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEK 152 (720)
Q Consensus 74 ~~~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~ 152 (720)
..-+.|+++..+.. ..-..+.+.+++.+++.|.++..... ..+.......++.+.+.++|.||+...... ...++.
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-~~~~~~ 136 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS--HYDAGQELQLLRAYLQHRPDGVLITGLSHA-EPFERI 136 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHHHHHHTTCCSEEEEECSCCC-TTHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC--CCChHHHHHHHHHHHcCCCCEEEEeCCCCC-HHHHHH
Confidence 34467999886533 22233488999999999998765432 222214556777788889999888653222 145666
Q ss_pred HHHcCC
Q 043468 153 ANKMKM 158 (720)
Q Consensus 153 a~~~g~ 158 (720)
+.+.+.
T Consensus 137 l~~~~i 142 (339)
T 3h5o_A 137 LSQHAL 142 (339)
T ss_dssp HHHTTC
T ss_pred HhcCCC
Confidence 677776
No 277
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=48.11 E-value=17 Score=34.36 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCC-------C---c---ccHHHHHHHhhcCCCeEE
Q 043468 71 VQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHF-------P---S---SRLSEELEKLKGGQCRVF 137 (720)
Q Consensus 71 l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~-------~---~---~d~~~~l~~i~~~~~~vv 137 (720)
++..+.++|+|+......- ....++.+++.|+++.... .+.. . . ..+...++++.+. +|+|
T Consensus 101 ~~~~~~~rigVlaT~~T~~----~~~y~~~l~~~g~~v~~~~-~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~I 174 (254)
T 1b73_A 101 LKKSRNKKIGVIGTPATVK----SGAYQRKLEEGGADVFAKA-CPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTL 174 (254)
T ss_dssp HHHCSSCEEEEEECHHHHH----HCHHHHHHHTTSCEEEEEE-CCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEE
T ss_pred HHccCCCEEEEEEChHHhh----hHHHHHHHHcCCCEEEecC-CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEE
Confidence 3445678999998765521 1234556667888875322 1111 0 0 0233344444445 9999
Q ss_pred EEEcCH
Q 043468 138 VVHLSL 143 (720)
Q Consensus 138 il~~~~ 143 (720)
|+.|..
T Consensus 175 ILGCT~ 180 (254)
T 1b73_A 175 ILGCTH 180 (254)
T ss_dssp EECCCC
T ss_pred EECccC
Confidence 998854
No 278
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=48.03 E-value=20 Score=31.09 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=43.7
Q ss_pred eEEEEEEEcCC--Cc---ccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc
Q 043468 77 HQVTVIYEDID--SS---ATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL 141 (720)
Q Consensus 77 ~~v~ii~~~~~--~g---~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~ 141 (720)
-+++||...|. .| +.. ...+.+.+++.|+++.....++.. . .+.+.+++..+.++|+|+..+
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn-~~~l~~~l~~~G~~v~~~~iv~Dd-~-~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRC-GPIITEWLAQQGFSSAQPEVVADG-S-PVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp CEEEEEEECHHHHC----CCH-HHHHHHHHHHTTCEECCCEEECSS-H-HHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEECCCCCCCceeeHH-HHHHHHHHHHCCCEEEEEEEeCCH-H-HHHHHHHHHHhCCCCEEEECC
Confidence 47888877654 22 222 577888899999998877777665 4 677777766555799988764
No 279
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=47.82 E-value=29 Score=33.99 Aligned_cols=82 Identities=11% Similarity=0.045 Sum_probs=50.2
Q ss_pred CCeEEEEEEEcCCCcccCcHHHHHHHHHHc-CcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC-HHHHHHHHHH
Q 043468 75 EWHQVTVIYEDIDSSATGILPHLSDALREA-GAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS-LELAVHLFEK 152 (720)
Q Consensus 75 ~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~-~~~~~~~l~~ 152 (720)
.-.+|+++..+++.....+.+.+++.+++. |+++..... ..+.......++.+.+.++|.|++... .+.....++.
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 82 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA--GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEE 82 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 346788887653222123367778888888 988765432 222113445677777789999888654 3334566777
Q ss_pred HHHcCC
Q 043468 153 ANKMKM 158 (720)
Q Consensus 153 a~~~g~ 158 (720)
+.+.|.
T Consensus 83 ~~~~~i 88 (325)
T 2x7x_A 83 AYQKGI 88 (325)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 777776
No 280
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=47.77 E-value=26 Score=31.14 Aligned_cols=66 Identities=18% Similarity=0.091 Sum_probs=44.6
Q ss_pred CCeEEEEEEEcCC--Ccc-cCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc
Q 043468 75 EWHQVTVIYEDID--SSA-TGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL 141 (720)
Q Consensus 75 ~~~~v~ii~~~~~--~g~-~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~ 141 (720)
..-+++||...|. .|. ..-...+.+.+++.|.++.....++.... .+.+.+++..+.++|+|+..+
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~-~I~~al~~a~~~~~DlVIttG 97 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEV-DIRNALNTAVIGGVDLVVSVG 97 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHH-HHHHHHHHHHHTTCSEEEEES
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHH-HHHHHHHHHHhCCCCEEEECC
Confidence 4457888887654 222 11257788889999999888877765433 566666665446789888754
No 281
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=47.45 E-value=47 Score=32.07 Aligned_cols=66 Identities=15% Similarity=0.022 Sum_probs=41.2
Q ss_pred CeEEEEEEEcCCCcccCcHHHHHHHHHHcCcE----EEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc
Q 043468 76 WHQVTVIYEDIDSSATGILPHLSDALREAGAE----IIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL 141 (720)
Q Consensus 76 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~----v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~ 141 (720)
-.||+|+..-++..-....+.|++.|++.|.. +.....-..++......+++++.+.++|+|+...
T Consensus 8 ~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~ 77 (302)
T 3lkv_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcC
Confidence 45788886444322222357889999998752 3333332333333667788889889999987543
No 282
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=47.24 E-value=40 Score=32.29 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=50.1
Q ss_pred eEEEEEEEcCC--CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc-CHHHHHHHHHHH
Q 043468 77 HQVTVIYEDID--SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL-SLELAVHLFEKA 153 (720)
Q Consensus 77 ~~v~ii~~~~~--~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~-~~~~~~~~l~~a 153 (720)
++|+++..+.. ++ ..+.+.+++.+++.|+++..... ...+.......++++.+.++|.|++.. ........++.+
T Consensus 5 ~~Ig~i~~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWF-NRMGEGVVQAGKEFNLNASQVGP-SSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHH-HHHHHHHHHHHHHTTEEEEEECC-SSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHH-HHHHHHHHHHHHHcCCEEEEECC-CCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 57888875432 22 33478888899999987653211 112211344567777778999988765 444455667778
Q ss_pred HHcCC
Q 043468 154 NKMKM 158 (720)
Q Consensus 154 ~~~g~ 158 (720)
.+.+.
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 283
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=46.70 E-value=1e+02 Score=24.36 Aligned_cols=56 Identities=18% Similarity=0.075 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
.+.++..+++.|..+... . +....+..+.+..+|+|++.. .+.+...+++..++.+
T Consensus 16 ~~~l~~~l~~~~~~v~~~---~-----~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 73 (126)
T 1dbw_A 16 RKSLAFMLTMNGFAVKMH---Q-----SAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLK 73 (126)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----CHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCcEEEEe---C-----CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcC
Confidence 677888888888875421 1 455667777777899999875 3445677788887764
No 284
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=46.70 E-value=9.1 Score=35.19 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=30.3
Q ss_pred cCCeEEEECCCCChhhHHHHHhhccCCCcEEecc
Q 043468 6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFA 39 (720)
Q Consensus 6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~ 39 (720)
..+|..|+||..|+-...+..+++.+++|+||.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHH
Confidence 4568899999999999999999999999999864
No 285
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=46.64 E-value=11 Score=33.82 Aligned_cols=100 Identities=13% Similarity=0.083 Sum_probs=47.3
Q ss_pred ecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeE
Q 043468 57 SQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRV 136 (720)
Q Consensus 57 ~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~v 136 (720)
.|+..+.++....+......+++.|+|.+..+..+.+++.+.+.+.+.|.++... .+. +. ...+ .+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~-~l~-----~~---~~~l--~~~d~ 70 (191)
T 1bvy_F 2 SPSTEQSAKKVRKKAENAHNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVA-TLD-----SH---AGNL--PREGA 70 (191)
T ss_dssp -------------------CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEE-EGG-----GS---TTCC--CSSSE
T ss_pred CCchhhHHHHHhhcccccCCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEe-eHH-----Hh---hhhh--hhCCe
Confidence 3555666666666665556678999999877665666788888888778754332 111 11 1122 23556
Q ss_pred EEEEc------CHHHHHHHHHHHHHcC---CCCCCeEEEE
Q 043468 137 FVVHL------SLELAVHLFEKANKMK---MMEKDYIWIT 167 (720)
Q Consensus 137 vil~~------~~~~~~~~l~~a~~~g---~~~~~~~~i~ 167 (720)
|++.+ .++.+..|++.+.... +.+..+..++
T Consensus 71 vi~g~~Ty~G~~p~~~~~fl~~L~~~~~~~l~~~~~avfG 110 (191)
T 1bvy_F 71 VLIVTASYNGHPPDNAKQFVDWLDQASADEVKGVRYSVFG 110 (191)
T ss_dssp EEEEECCBTTBCCTTTHHHHHHHHTCCSSCCTTCCEEEEE
T ss_pred EEEEEeecCCCcCHHHHHHHHHHHhccchhhCCCEEEEEE
Confidence 65543 2346777888776542 4444444444
No 286
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=46.24 E-value=1.1e+02 Score=30.65 Aligned_cols=93 Identities=11% Similarity=0.133 Sum_probs=56.1
Q ss_pred HHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--C----H
Q 043468 70 IVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--S----L 143 (720)
Q Consensus 70 ~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~----~ 143 (720)
++.....+++.|+|.+..+....+++.+.+.+++.|.++.... + ... +......++. ++|.|++.+ . .
T Consensus 246 ~~~~~~~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~-~--~~~-~~~~~~~~~~--~~d~ii~gsp~~~~~~~ 319 (402)
T 1e5d_A 246 YAEQKPTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMW-C--KAC-HHSQIMSEIS--DAGAVIVGSPTHNNGIL 319 (402)
T ss_dssp HHHCCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE-T--TTS-CHHHHHHHHH--TCSEEEEECCCBTTBCC
T ss_pred HhcCCCCCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEE-C--CCC-CHHHHHHHHH--HCCEEEEECCccCCCch
Confidence 3333335789999987655444456777778888887653332 2 222 5556666665 467777754 2 2
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEe
Q 043468 144 ELAVHLFEKANKMKMMEKDYIWITT 168 (720)
Q Consensus 144 ~~~~~~l~~a~~~g~~~~~~~~i~~ 168 (720)
.....++.......+.++....+++
T Consensus 320 ~~~~~~l~~l~~~~l~~k~~~~f~t 344 (402)
T 1e5d_A 320 PYVAGTLQYIKGLRPQNKIGGAFGS 344 (402)
T ss_dssp HHHHHHHHHHHHTCCCSCEEEEEEE
T ss_pred HHHHHHHHHhhhcccCCCEEEEEEc
Confidence 3677788777766666554444444
No 287
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=46.17 E-value=49 Score=30.41 Aligned_cols=108 Identities=8% Similarity=0.030 Sum_probs=68.6
Q ss_pred cEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEe
Q 043468 34 PVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLA 113 (720)
Q Consensus 34 p~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~ 113 (720)
.+||-+++...+.+.-.--+..+..+.....+++...-+ ++ ++++++...+.. ..+....+-.|.++....
T Consensus 66 VIISRGgta~~Lr~~~~iPVV~I~vs~~Dil~aL~~a~~-~~-~kIavVg~~~~~------~~~~~i~~ll~~~i~~~~- 136 (225)
T 2pju_A 66 AIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQFLAKAGK-LT-SSIGVVTYQETI------PALVAFQKTFNLRLDQRS- 136 (225)
T ss_dssp EEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHHTTC-TT-SCEEEEEESSCC------HHHHHHHHHHTCCEEEEE-
T ss_pred EEEeCChHHHHHHhhCCCCEEEecCCHHHHHHHHHHHHh-hC-CcEEEEeCchhh------hHHHHHHHHhCCceEEEE-
Confidence 477777776666543334567777887777777666544 33 589999776543 333333333455544332
Q ss_pred cCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468 114 LPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKM 158 (720)
Q Consensus 114 ~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~ 158 (720)
+. +.++....++++++.++++|+..... .+.|.+.|+
T Consensus 137 ~~--~~ee~~~~i~~l~~~G~~vVVG~~~~------~~~A~~~Gl 173 (225)
T 2pju_A 137 YI--TEEDARGQINELKANGTEAVVGAGLI------TDLAEEAGM 173 (225)
T ss_dssp ES--SHHHHHHHHHHHHHTTCCEEEESHHH------HHHHHHTTS
T ss_pred eC--CHHHHHHHHHHHHHCCCCEEECCHHH------HHHHHHcCC
Confidence 22 22289999999999999997764433 455788998
No 288
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=46.08 E-value=54 Score=25.78 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...+++.+++.|.+++... . +....+..+.+..+|+|++.. .+.+...++++.++..
T Consensus 15 ~~~l~~~l~~~g~~vv~~~--~-----~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~ 73 (120)
T 1tmy_A 15 RMMLKDIITKAGYEVAGEA--T-----NGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKID 73 (120)
T ss_dssp HHHHHHHHHHTTCEEEEEE--S-----SHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEE--C-----CHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhC
Confidence 6788888888898754321 1 445566666666899999876 3445677788877755
No 289
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=46.04 E-value=48 Score=29.11 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=41.2
Q ss_pred EEEEEEEcCC-------Cc---ccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhh-cCCCeEEEEEc
Q 043468 78 QVTVIYEDID-------SS---ATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLK-GGQCRVFVVHL 141 (720)
Q Consensus 78 ~v~ii~~~~~-------~g---~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~-~~~~~vvil~~ 141 (720)
+++||.-.|. .| ... ...+.+.+++.|++|.....++.... .+...+.+.. ..++|+|+..+
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~n-g~~L~~~L~~~G~~v~~~~iV~Dd~~-~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDES-GDIIKQLLIENGHKIIGYSLVPDDKI-KILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHH-HHHHHHHHHHTTCEEEEEEEECSCHH-HHHHHHHHHHTCTTCCEEEEES
T ss_pred EEEEEEEcCCCccccccCCCCCcch-HHHHHHHHHHCCCEEEEEEEeCCCHH-HHHHHHHHHHhcCCCCEEEecC
Confidence 7888876542 01 112 46788999999999988887775433 4555555544 34789988765
No 290
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=45.73 E-value=21 Score=34.37 Aligned_cols=82 Identities=11% Similarity=0.038 Sum_probs=53.3
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc-CHHHHHHHHHHHH
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL-SLELAVHLFEKAN 154 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~-~~~~~~~~l~~a~ 154 (720)
.+|+++..+.. ..-..+.+.+++.+++.|+++.....-...+.......++.+.+.++|.|++.. ..+.....++++.
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~ 83 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRAN 83 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHH
Confidence 46888876542 222334788999999999987654321111222455677777788999888754 4444466778888
Q ss_pred HcCC
Q 043468 155 KMKM 158 (720)
Q Consensus 155 ~~g~ 158 (720)
+.|.
T Consensus 84 ~~gi 87 (297)
T 3rot_A 84 KLNI 87 (297)
T ss_dssp HHTC
T ss_pred HCCC
Confidence 8887
No 291
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.69 E-value=71 Score=25.19 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHc
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKM 156 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~ 156 (720)
...++..+++.|.++... . +....++.+.+..+|+|++.. .+.+...+++..++.
T Consensus 15 ~~~l~~~L~~~g~~v~~~---~-----~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 15 ADILEFNLRKEGYEVHCA---H-----DGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCEEEEEe---C-----CHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 678888899999876431 1 555677777888999999976 456777888888764
No 292
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=45.64 E-value=15 Score=35.15 Aligned_cols=33 Identities=9% Similarity=0.295 Sum_probs=21.3
Q ss_pred ccCCeEEEECCCCChhhHHHHHhhccCCCcEEe
Q 043468 5 DSQKVEAILGPQTSEETSSVAEIASKKQIPVLS 37 (720)
Q Consensus 5 ~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is 37 (720)
++.++.+|+=+.+++.+.++-.+-+..++|+|+
T Consensus 83 ~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 83 EQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp TTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred HHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 456777777666665544455555666788774
No 293
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=45.47 E-value=38 Score=32.26 Aligned_cols=85 Identities=8% Similarity=0.106 Sum_probs=48.4
Q ss_pred HHhCCCeEEEEEEEc--C-CCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHH
Q 043468 71 VQSWEWHQVTVIYED--I-DSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAV 147 (720)
Q Consensus 71 l~~~~~~~v~ii~~~--~-~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~ 147 (720)
++...-.+|+++..+ . +.....+.+.+++.+++.|.++.... ...+.......++.+.+.++|.|++.....+ .
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~ 90 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD--GKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-V 90 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC--CTTSHHHHHHHHHHHHHTTCSEEEEECSSSC-H
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe--CCCCHHHHHHHHHHHHhcCCCEEEEecCCCC-h
Confidence 333345689999876 2 22223347888889999999875432 1111113455677777789998888654221 1
Q ss_pred HHHHHHHH-cCC
Q 043468 148 HLFEKANK-MKM 158 (720)
Q Consensus 148 ~~l~~a~~-~g~ 158 (720)
..++.+.+ .+.
T Consensus 91 ~~~~~l~~~~~i 102 (296)
T 3brq_A 91 DEIDDIIDAHSQ 102 (296)
T ss_dssp HHHHHHHHTCSS
T ss_pred HHHHHHHhcCCC
Confidence 34556666 565
No 294
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=45.32 E-value=22 Score=35.52 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=49.4
Q ss_pred CCeEEEEEEEc---CCCcccCcHHHHHHHHHHcC--cEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHH
Q 043468 75 EWHQVTVIYED---IDSSATGILPHLSDALREAG--AEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHL 149 (720)
Q Consensus 75 ~~~~v~ii~~~---~~~g~~~~~~~~~~~~~~~g--~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~ 149 (720)
.-.+|++|+.+ |........+.+++..++.| +++...+..+. .. ++.+.++.+.+.++|.||..+.. ....+
T Consensus 25 ~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~-~~-d~~~~l~~l~~~g~d~Ii~~g~~-~~~~~ 101 (356)
T 3s99_A 25 EKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAE-GA-DAERSIKRIARAGNKLIFTTSFG-YMDPT 101 (356)
T ss_dssp -CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCT-TH-HHHHHHHHHHHTTCSEEEECSGG-GHHHH
T ss_pred CCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCC-HH-HHHHHHHHHHHCCCCEEEECCHH-HHHHH
Confidence 34689999964 22222334677888888888 77666554333 22 78889999998999987776532 22334
Q ss_pred HHHHHH
Q 043468 150 FEKANK 155 (720)
Q Consensus 150 l~~a~~ 155 (720)
.+.|.+
T Consensus 102 ~~vA~~ 107 (356)
T 3s99_A 102 VKVAKK 107 (356)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 444443
No 295
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=45.24 E-value=1.5e+02 Score=25.50 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=47.9
Q ss_pred eEEEEEEEcCCCcc-----cCcHHHHHHHHHHcCcEEEEEEecCCCCc-ccHHHHHHHhhc-CCCeEEEEEcCHHHH---
Q 043468 77 HQVTVIYEDIDSSA-----TGILPHLSDALREAGAEIIHVLALPHFPS-SRLSEELEKLKG-GQCRVFVVHLSLELA--- 146 (720)
Q Consensus 77 ~~v~ii~~~~~~g~-----~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~d~~~~l~~i~~-~~~~vvil~~~~~~~--- 146 (720)
++|.++.++-..|. .++...+.+.+.+.|..+.....--.+.. .+....+.+... .++|+|++.....|.
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~~ 82 (185)
T 3hp4_A 3 NTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQYEPTHVLIELGANDGLRG 82 (185)
T ss_dssp EEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCHHHHHTT
T ss_pred CeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEeecccCCCC
Confidence 57777776655542 45577888888877654433322222222 244445554433 389999998876664
Q ss_pred ----------HHHHHHHHHcC
Q 043468 147 ----------VHLFEKANKMK 157 (720)
Q Consensus 147 ----------~~~l~~a~~~g 157 (720)
..+++.+++.+
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~ 103 (185)
T 3hp4_A 83 FPVKKMQTNLTALVKKSQAAN 103 (185)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHHcC
Confidence 45666677664
No 296
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=45.19 E-value=28 Score=34.74 Aligned_cols=96 Identities=11% Similarity=0.001 Sum_probs=58.5
Q ss_pred HHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCC-cccHHHHHHHhhcCCCeEEEEEcCH
Q 043468 65 KAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFP-SSRLSEELEKLKGGQCRVFVVHLSL 143 (720)
Q Consensus 65 ~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~d~~~~l~~i~~~~~~vvil~~~~ 143 (720)
..+.++++.+|.+|+.|+++.... ++.+.+.+.+++.++.+. ....+.. .+.....++.+++.++|+||-.+.|
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~---~~~~~v~~~L~~~~~~~f--~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 99 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ---AEAERIADLLGPLSAGVY--AGAVMHVPIESARDATARAREAGADCAVAVGGG 99 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH---HHHHHHHHHHGGGEEEEE--CCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH---HHHHHHHHHhccCCEEEe--cCCcCCCCHHHHHHHHHHhhccCCCEEEEeCCc
Confidence 446677888898999999876532 336788888887754321 1112111 1256667777788899988765543
Q ss_pred --HHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 043468 144 --ELAVHLFEKANKMKMMEKDYIWITTDA 170 (720)
Q Consensus 144 --~~~~~~l~~a~~~g~~~~~~~~i~~~~ 170 (720)
-|+..++.. ..++ .++-|-|..
T Consensus 100 sviD~aK~iA~--~~~~---p~i~IPTT~ 123 (358)
T 3jzd_A 100 STTGLGKAIAL--ETGM---PIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHH--HHCC---CEEEEECSS
T ss_pred HHHHHHHHHHh--ccCC---CEEEEeCCc
Confidence 455555543 3344 455555543
No 297
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=45.14 E-value=23 Score=33.30 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=67.7
Q ss_pred CcEEecc-cCCcccccCCCCeEEEeecChHHHHHHHHHHHH-----hCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCc
Q 043468 33 IPVLSFA-DATPNWATERWPFLLQASQNQLAQMKAIAAIVQ-----SWEWHQVTVIYEDIDSSATGILPHLSDALREAGA 106 (720)
Q Consensus 33 ip~is~~-~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~-----~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~ 106 (720)
++++..+ .|...+.+.+.+-. . +++...++.+++.+. ....++|.++..+.. ...+.+.|++.|.
T Consensus 87 ~~i~aVG~~Ta~~L~~~G~~~~--~-~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~------r~~L~~~L~~~G~ 157 (254)
T 4es6_A 87 QTWCSVGAATAAILEAYGLDVT--Y-PEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGG------REFLAERLRGQGV 157 (254)
T ss_dssp CEEEESSHHHHHHHHHHTCCEE--C-CSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSC------CCHHHHHHHHTTC
T ss_pred CEEEEECHHHHHHHHHcCCCcc--c-CCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCcc------HHHHHHHHHHCCC
Confidence 5666665 33444543332221 2 333334577777764 345678876654332 4578889999999
Q ss_pred EEEEEEecCCCCcc-cHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHH
Q 043468 107 EIIHVLALPHFPSS-RLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANK 155 (720)
Q Consensus 107 ~v~~~~~~~~~~~~-d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~ 155 (720)
+|.....|...... +.....+.+...+.|+| +..++..+..|++.+.+
T Consensus 158 ~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v-~ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 158 QVDYLPLYRRRAPDYPAGELLARVRAERLNGL-VVSSGQGLQNLYQLAAA 206 (254)
T ss_dssp EEEEEECEEEECCCCCTTHHHHHHHHTTCCEE-ECCSHHHHHHHHHHHGG
T ss_pred EEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEE-EEcCHHHHHHHHHHhhH
Confidence 98888777543221 23334445555678874 56788888888887654
No 298
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=44.98 E-value=41 Score=33.16 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=48.8
Q ss_pred CeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhh
Q 043468 51 PFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLK 130 (720)
Q Consensus 51 ~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~ 130 (720)
..+|.++++.......|.. -+++.+|+.-....... .+.+.+.+++.|+++.....- ... +......++.
T Consensus 10 ~~~~~~~~~~~~~~~~m~~------~~~~~vi~Np~sg~~~~-~~~i~~~l~~~g~~~~~~~t~--~~~-~~~~~~~~~~ 79 (332)
T 2bon_A 10 TSLYKKAGSETLYIQGMAE------FPASLLILNGKSTDNLP-LREAIMLLREEGMTIHVRVTW--EKG-DAARYVEEAR 79 (332)
T ss_dssp --------------------------CCEEEEECSSSTTCHH-HHHHHHHHHTTTCCEEEEECC--STT-HHHHHHHHHH
T ss_pred ceeeeeccCcchhhhhhhh------cceEEEEECCCCCCCch-HHHHHHHHHHcCCcEEEEEec--Ccc-hHHHHHHHHH
Confidence 3566777777666666543 25788887644432233 678888999999876554332 122 4445555555
Q ss_pred cCCCeEEEEEcCHHHHHHHHHHHHHc
Q 043468 131 GGQCRVFVVHLSLELAVHLFEKANKM 156 (720)
Q Consensus 131 ~~~~~vvil~~~~~~~~~~l~~a~~~ 156 (720)
..++|.|+..+.-.....+++.+.+.
T Consensus 80 ~~~~d~vvv~GGDGTl~~v~~~l~~~ 105 (332)
T 2bon_A 80 KFGVATVIAGGGDGTINEVSTALIQC 105 (332)
T ss_dssp HHTCSEEEEEESHHHHHHHHHHHHHC
T ss_pred hcCCCEEEEEccchHHHHHHHHHhhc
Confidence 56788888877777777777777654
No 299
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=44.89 E-value=45 Score=27.85 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=46.3
Q ss_pred CCeEEEEEEEcCCCcccCcHHHHHHHHHHcCc-EEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHH
Q 043468 75 EWHQVTVIYEDIDSSATGILPHLSDALREAGA-EIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFE 151 (720)
Q Consensus 75 ~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~ 151 (720)
+..+|.|+ +|+.. ..+.+++.+++.|. .++... . +....+..+.+..+|+|++.. .+.+...+++
T Consensus 14 ~~~~iLiv-dd~~~----~~~~l~~~L~~~~~~~~v~~~--~-----~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~ 81 (152)
T 3eul_A 14 EKVRVVVG-DDHPL----FREGVVRALSLSGSVNVVGEA--D-----DGAAALELIKAHLPDVALLDYRMPGMDGAQVAA 81 (152)
T ss_dssp CCEEEEEE-CSSHH----HHHHHHHHHHHHSSEEEEEEE--S-----SHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHH
T ss_pred ceEEEEEE-cCCHH----HHHHHHHHHhhCCCeEEEEEe--C-----CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 34455444 43332 26788889988884 332221 1 556667777777899999975 4556778888
Q ss_pred HHHHcCC
Q 043468 152 KANKMKM 158 (720)
Q Consensus 152 ~a~~~g~ 158 (720)
+.++...
T Consensus 82 ~l~~~~~ 88 (152)
T 3eul_A 82 AVRSYEL 88 (152)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 8887654
No 300
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=44.81 E-value=35 Score=28.85 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC--CCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG--QCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~--~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
.+.+++.+++.|.++.... . +....+..+++. .+|+|++.. ...+...++++.++..-
T Consensus 49 ~~~l~~~L~~~g~~v~~~~--~-----~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~ 110 (157)
T 3hzh_A 49 VKQLTQIFTSEGFNIIDTA--A-----DGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDK 110 (157)
T ss_dssp HHHHHHHHHHTTCEEEEEE--S-----SHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCeEEEEE--C-----CHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCC
Confidence 7888899999998875221 1 555666666666 789999865 45567777888877653
No 301
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=44.73 E-value=48 Score=27.06 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...++..+++.|.+|... . +....+..+.+..+|+|++.. .+.+...+++..++..
T Consensus 17 ~~~l~~~L~~~g~~v~~~---~-----~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 17 AEMLELVLRGAGYEVRRA---A-----SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHCCCEEEEe---C-----CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 678888898899876421 1 555667777778899999975 4556677777777653
No 302
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=44.40 E-value=36 Score=32.60 Aligned_cols=80 Identities=9% Similarity=0.182 Sum_probs=52.9
Q ss_pred CCeEEEEEEE----cC-CCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHH
Q 043468 75 EWHQVTVIYE----DI-DSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHL 149 (720)
Q Consensus 75 ~~~~v~ii~~----~~-~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~ 149 (720)
.-+.|+++.. +. +..-..+.+.+++.+++.|..+.....-. .. .....++.+.+.++|.||+....... ..
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~-~~~~~~~~l~~~~vdGiIi~~~~~~~-~~ 80 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP--GE-KYQSLIHLVETRRVDALIVAHTQPED-FR 80 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT--TC-CCHHHHHHHHHTCCSEEEECSCCSSC-HH
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC--hh-hHHHHHHHHHcCCCCEEEEeCCCCCh-HH
Confidence 3467999987 32 21123347888999999999887765432 22 55667777777899998886533222 55
Q ss_pred HHHHHHcCC
Q 043468 150 FEKANKMKM 158 (720)
Q Consensus 150 l~~a~~~g~ 158 (720)
++.+.+.|+
T Consensus 81 ~~~l~~~~i 89 (294)
T 3qk7_A 81 LQYLQKQNF 89 (294)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 667777776
No 303
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=44.29 E-value=1.3e+02 Score=28.34 Aligned_cols=100 Identities=10% Similarity=0.075 Sum_probs=60.3
Q ss_pred HHHHHHHH-hCC-CeEEEEEEEcCCCcccCcHHHHHHH--------HHHc-CcEEEEEEecCCCCcccHHHHHHHhhcCC
Q 043468 65 KAIAAIVQ-SWE-WHQVTVIYEDIDSSATGILPHLSDA--------LREA-GAEIIHVLALPHFPSSRLSEELEKLKGGQ 133 (720)
Q Consensus 65 ~~~~~~l~-~~~-~~~v~ii~~~~~~g~~~~~~~~~~~--------~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~~~ 133 (720)
+.+..+++ ..+ ..+|.+-....+...-+ ..-+... ++.+ |++|.+--. .. ..+..++.+++.+
T Consensus 107 ~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG-~~iv~~~k~~~~~~~L~~~~G~eVi~LG~----~v-p~e~iv~aa~e~~ 180 (262)
T 1xrs_B 107 EETDEYIKENIGRKIVVVGASTGTDAHTVG-IDAIMNMKGYAGHYGLERYEMIDAYNLGS----QV-ANEDFIKKAVELE 180 (262)
T ss_dssp HHHHHHHHHHTCSCEEEEEEEBTTCCCCHH-HHHHHSTTCBTTBCCGGGCTTEEEEECCS----SB-CHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCchHH-HHHHhhhhcccchHHHHhcCCcEEEECCC----CC-CHHHHHHHHHHcC
Confidence 34444443 333 33554443344443344 5556555 8889 998766321 22 6778888888899
Q ss_pred CeEEEEEcC-------HHHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 043468 134 CRVFVVHLS-------LELAVHLFEKANKMKMMEKDYIWITTDA 170 (720)
Q Consensus 134 ~~vvil~~~-------~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 170 (720)
+|+|.+.+. ......+++++++.|+...-.++++...
T Consensus 181 ~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~ 224 (262)
T 1xrs_B 181 ADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPR 224 (262)
T ss_dssp CSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTT
T ss_pred CCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCc
Confidence 999998762 2345667888888887543345555443
No 304
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=43.82 E-value=29 Score=28.20 Aligned_cols=58 Identities=10% Similarity=0.183 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
.+.+++.+++.|..+.... .... + .+..+++..+|+|++.. ...+...++++.++...
T Consensus 14 ~~~l~~~L~~~g~~v~~~~--~~~~--~---a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~ 73 (134)
T 3f6c_A 14 IAAIRNLLIKNDIEILAEL--TEGG--S---AVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQY 73 (134)
T ss_dssp HHHHHHHHHHTTEEEEEEE--SSST--T---HHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCcEEEEEc--CCHH--H---HHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCC
Confidence 7888999999997664322 2222 2 44455556799999976 45567788888887654
No 305
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=43.78 E-value=32 Score=32.80 Aligned_cols=79 Identities=9% Similarity=0.006 Sum_probs=48.8
Q ss_pred eEEEEEEEc-----CCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHH
Q 043468 77 HQVTVIYED-----IDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFE 151 (720)
Q Consensus 77 ~~v~ii~~~-----~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~ 151 (720)
++|+++..+ ++..-..+.+.+++.+++.|.++.... ...+.......++.+.+.++|.|++.....+ ...++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 81 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFP--FSEDRSQIDIYRDLIRSGNVDGFVLSSINYN-DPRVQ 81 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECC--CCSSTTCCHHHHHHHHTTCCSEEEECSCCTT-CHHHH
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEe--CCCchHHHHHHHHHHHcCCCCEEEEeecCCC-cHHHH
Confidence 478888765 232223347888889999998875432 1111114566788888889999888653221 14556
Q ss_pred HHHHcCC
Q 043468 152 KANKMKM 158 (720)
Q Consensus 152 ~a~~~g~ 158 (720)
.+.+.+.
T Consensus 82 ~l~~~~i 88 (287)
T 3bbl_A 82 FLLKQKF 88 (287)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 6666665
No 306
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=43.69 E-value=56 Score=27.06 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
.+.++..+++.|.+++... . +-...+..+++..+|+|++.. ++-+...++++.++..
T Consensus 25 r~~l~~~L~~~G~~~v~~a------~-~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 25 RRIVKNLLRDLGFNNTQEA------D-DGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp HHHHHHHHHHTTCCCEEEE------S-SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCcEEEEE------C-CHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 6788888999998644321 1 455667777778999999965 5667777888887654
No 307
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=43.62 E-value=66 Score=26.17 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=40.1
Q ss_pred HHHHHHHHHH-cCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC--HHHHHHHHHHHHHc
Q 043468 94 LPHLSDALRE-AGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS--LELAVHLFEKANKM 156 (720)
Q Consensus 94 ~~~~~~~~~~-~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~--~~~~~~~l~~a~~~ 156 (720)
...+++.+++ .|.+++... . +....+..+.+..+|+|++... ..+...++++.++.
T Consensus 21 ~~~l~~~L~~~~~~~~v~~~--~-----~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 21 ADMLTQFLENLFPYAKIKIA--Y-----NPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp HHHHHHHHHHHCTTCEEEEE--C-----SHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhccCccEEEEE--C-----CHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhC
Confidence 6788888988 888733321 1 5556677777778999999863 44667788888874
No 308
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=43.44 E-value=60 Score=26.49 Aligned_cols=54 Identities=7% Similarity=0.129 Sum_probs=42.5
Q ss_pred HHHHHHHHHH-cCcEEEEEEecCCCCcccHHHHHHHhhc-CCCeEEEEEc--C-HHHHHHHHHHHHH
Q 043468 94 LPHLSDALRE-AGAEIIHVLALPHFPSSRLSEELEKLKG-GQCRVFVVHL--S-LELAVHLFEKANK 155 (720)
Q Consensus 94 ~~~~~~~~~~-~g~~v~~~~~~~~~~~~d~~~~l~~i~~-~~~~vvil~~--~-~~~~~~~l~~a~~ 155 (720)
...+++.+++ .|.++... . +....+..+++ ..+|+|++.. . +.+...++++.++
T Consensus 17 ~~~l~~~L~~~~~~~v~~~---~-----~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 17 REKTKIIFDNIGEYDFIEV---E-----NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHCCCEEEEE---C-----SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccEEEE---C-----CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 6788888988 88876532 1 56677888888 8999999976 4 6788889999888
No 309
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=43.38 E-value=2.3e+02 Score=27.30 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEEEEcCCCc-----c----cCcHHHHHHHHHHc-C--cEEEEEEecCCCCcc--cHHHH
Q 043468 60 QLAQMKAIAAIVQSWEWHQVTVIYEDIDSS-----A----TGILPHLSDALREA-G--AEIIHVLALPHFPSS--RLSEE 125 (720)
Q Consensus 60 ~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g-----~----~~~~~~~~~~~~~~-g--~~v~~~~~~~~~~~~--d~~~~ 125 (720)
+....+..+.-+...|.+.|.++..|...+ . ...+..+.+.+++. | +++.. ..+|.+... ++...
T Consensus 84 ~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igv-A~yPE~Hp~~~~~~~d 162 (310)
T 3apt_A 84 SRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGG-AAYPEGHPESESLEAD 162 (310)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEE-EECTTCCTTSSCHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEE-EeCCCcCCCCCCHHHH
Confidence 334444555555788999999998875532 1 11256666666665 5 56544 455643221 55555
Q ss_pred HHHhh---cCCCeEEEE--EcCHHHHHHHHHHHHHcCCCC
Q 043468 126 LEKLK---GGQCRVFVV--HLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 126 l~~i~---~~~~~vvil--~~~~~~~~~~l~~a~~~g~~~ 160 (720)
+..++ ++++|.++. ..+.+....|+..+++.|+.-
T Consensus 163 ~~~Lk~Kv~aGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~v 202 (310)
T 3apt_A 163 LRHFKAKVEAGLDFAITQLFFNNAHYFGFLERARRAGIGI 202 (310)
T ss_dssp HHHHHHHHHHHCSEEEECCCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHHcCCCC
Confidence 55554 358998886 558999999999999999853
No 310
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=43.27 E-value=27 Score=28.99 Aligned_cols=82 Identities=10% Similarity=0.197 Sum_probs=48.7
Q ss_pred EEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC-------HH-HHHHHH
Q 043468 79 VTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS-------LE-LAVHLF 150 (720)
Q Consensus 79 v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~-------~~-~~~~~l 150 (720)
|.|+|.+..+..+.+++.+.+.+++.|.++... .+... +. ..+ .+.|.|++.++ ++ ....|+
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~-~~~~~---~~----~~l--~~~d~iiig~pty~~g~~p~~~~~~fl 70 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTI-NVSDV---NI----DEL--LNEDILILGCSAMTDEVLEESEFEPFI 70 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEE-EGGGC---CH----HHH--TTCSEEEEEECCBTTTBCCTTTHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEE-EhhhC---CH----HHH--hhCCEEEEEcCccCCCCCChHHHHHHH
Confidence 467888776555566788888888888764332 22211 22 133 35677776543 11 578888
Q ss_pred HHHHHcCCCCCCeEEEEeCcc
Q 043468 151 EKANKMKMMEKDYIWITTDAF 171 (720)
Q Consensus 151 ~~a~~~g~~~~~~~~i~~~~~ 171 (720)
...... +.++....+++..+
T Consensus 71 ~~l~~~-l~~k~~~~f~t~g~ 90 (138)
T 5nul_A 71 EEISTK-ISGKKVALFGSYGW 90 (138)
T ss_dssp HHHGGG-CTTCEEEEEEEESS
T ss_pred HHHHhh-cCCCEEEEEEecCC
Confidence 887664 55555555555443
No 311
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=43.20 E-value=55 Score=29.28 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=46.9
Q ss_pred EEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+..+++..+.++.. .+++.... ++...++++|.+|++|+++...... ...+. +.++....+++++++..
T Consensus 18 ~~l~~~l~~f~~~~P-~v~l~l~~--~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 18 YLLPHIIPMLHQTFP-KLEMYLHE--AQTHQLLAQLDSGKLDAVILALVKE---SEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp HHHHHHHHHHHHHCT-TEEEEEEE--CCHHHHHHHHHHTSCSEEEEECCGG---GTTSE-EEEEEEEEEEEEEETTS
T ss_pred hhhhHHHHHHHHHCC-CeEEEEEE--CChHHHHHHHHcCCeeEEEecCCCC---CCCcc-eeeeecccEEEEEcCCC
Confidence 456778888888773 23344433 3468899999999999998543221 12233 35788888899988764
No 312
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=43.04 E-value=19 Score=34.52 Aligned_cols=82 Identities=7% Similarity=0.068 Sum_probs=51.4
Q ss_pred hCCCeEEEEEEEc-----C-CCcccCcHHHHHHHHHHcCcEEEEEEecCCCC-cccHHHHHHHhhcCCCeEEEEEcCHHH
Q 043468 73 SWEWHQVTVIYED-----I-DSSATGILPHLSDALREAGAEIIHVLALPHFP-SSRLSEELEKLKGGQCRVFVVHLSLEL 145 (720)
Q Consensus 73 ~~~~~~v~ii~~~-----~-~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~d~~~~l~~i~~~~~~vvil~~~~~~ 145 (720)
..+-++|+++..+ . +..-..+.+.+++.+++.|.++... .... .......++.+.+.++|.|++......
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~ 81 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN 81 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 3345689998876 2 2222344788889999999876542 2221 113455677788889999888553322
Q ss_pred HHHHHHHHHHcCC
Q 043468 146 AVHLFEKANKMKM 158 (720)
Q Consensus 146 ~~~~l~~a~~~g~ 158 (720)
...++.+.+.|.
T Consensus 82 -~~~~~~l~~~~i 93 (292)
T 3k4h_A 82 -DRIIQYLHEQNF 93 (292)
T ss_dssp -CHHHHHHHHTTC
T ss_pred -hHHHHHHHHCCC
Confidence 256677777776
No 313
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=42.91 E-value=38 Score=27.62 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC--H--HHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS--L--ELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~--~--~~~~~~l~~a~~~g~ 158 (720)
...+++.+++.|.++... . +....+..+++..+|+|++... + .+...+++..++.+-
T Consensus 19 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~ 79 (136)
T 3kto_A 19 RAALSKLLSPLDVTIQCF---A-----SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGF 79 (136)
T ss_dssp HHHHHHHHTTSSSEEEEE---S-----SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcEEEEe---C-----CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCC
Confidence 678888898889876532 1 5556777777788999999864 4 567888999888763
No 314
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=42.75 E-value=77 Score=25.91 Aligned_cols=58 Identities=5% Similarity=0.126 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...+++.+++.|........ . +....+..+....+|+|++.. .+.+...++++.++..
T Consensus 18 ~~~l~~~L~~~~~~~~v~~~-~-----~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (144)
T 3kht_A 18 IALIRRVLDRKDIHCQLEFV-D-----NGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPG 77 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEE-S-----SHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSS
T ss_pred HHHHHHHHHhcCCCeeEEEE-C-----CHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 78889999998876322111 1 666778888888999999976 4556778888888743
No 315
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=42.49 E-value=27 Score=34.37 Aligned_cols=55 Identities=7% Similarity=0.025 Sum_probs=45.1
Q ss_pred cccchhhhhhh-----hccCCc-cc--ccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccC
Q 043468 502 HQTGTFFWLSF-----NLHGEK-LH--SNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLE 556 (720)
Q Consensus 502 ~~~~~~~~~~~-----~~~g~~-~~--~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~ 556 (720)
..+..++|+++ ++.|.. |. ...+|++..+-.+.++++.+.-++-+.+-++.+...
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 45778888888 666765 43 578999999999999999999999999988876643
No 316
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=42.46 E-value=2.4e+02 Score=27.14 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEEEcCCCc---ccCcHHHHHHHHHH-cCcEEEEEEecCCCCcc--cHHHHHHHhh---c
Q 043468 61 LAQMKAIAAIVQSWEWHQVTVIYEDIDSS---ATGILPHLSDALRE-AGAEIIHVLALPHFPSS--RLSEELEKLK---G 131 (720)
Q Consensus 61 ~~~~~~~~~~l~~~~~~~v~ii~~~~~~g---~~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~--d~~~~l~~i~---~ 131 (720)
....+..+.-+...|.+.|-.+..|...+ .......+.+.+++ .++++. ...+|.+... ++...+.+++ +
T Consensus 96 ~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~Ig-vA~yPE~Hp~a~~~~~d~~~Lk~Kvd 174 (304)
T 3fst_A 96 PDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDIS-VAAYPEVHPEAKSAQADLLNLKRKVD 174 (304)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEE-EEECTTCCTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEE-EEeCCCcCCCCCCHHHHHHHHHHHHH
Confidence 33444444445788999999997765421 12225666666665 456653 4455544321 5655565555 3
Q ss_pred CCCeEEEE--EcCHHHHHHHHHHHHHcCCCC
Q 043468 132 GQCRVFVV--HLSLELAVHLFEKANKMKMME 160 (720)
Q Consensus 132 ~~~~vvil--~~~~~~~~~~l~~a~~~g~~~ 160 (720)
+++|.++. ..+.+....|++.+++.|..-
T Consensus 175 AGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~v 205 (304)
T 3fst_A 175 AGANRAITQFFFDVESYLRFRDRCVSAGIDV 205 (304)
T ss_dssp HTCCEEEECCCSCHHHHHHHHHHHHHTTCCS
T ss_pred cCCCEEEeCccCCHHHHHHHHHHHHhcCCCC
Confidence 59999886 558899999999999999843
No 317
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=42.41 E-value=95 Score=26.72 Aligned_cols=91 Identities=10% Similarity=0.007 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEec--CC----CCcccHHHHHHHhh-cCCCeEE
Q 043468 65 KAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLAL--PH----FPSSRLSEELEKLK-GGQCRVF 137 (720)
Q Consensus 65 ~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~--~~----~~~~d~~~~l~~i~-~~~~~vv 137 (720)
..+.+.+...+.-..+..|.+ ..+... .+.+.+.+.+.|+++...... .. ++. |..-.+..+. +...|.+
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~~-~~~~~~-~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~-Dv~laiD~~~~a~~~d~~ 112 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYAI-ASNDPK-QRQFHHILRGVGFEVMLKPYIQRRDGSAKGDW-DVGITLDAIEIAPDVDRV 112 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEEC-CCCCHH-HHHHHHHHHHHTCEEEECCCCCCSSCCCSCCC-HHHHHHHHHHHGGGCSEE
T ss_pred HHHHHHHhcCCEEEEEEEEEc-cCCchh-HHHHHHHHHHCCcEEEEEeeeeccCCccCCCc-cHHHHHHHHHhhccCCEE
Confidence 456666655554444555633 222123 678899999999988653221 11 122 5444444332 2467888
Q ss_pred EEEcCHHHHHHHHHHHHHc-CC
Q 043468 138 VVHLSLELAVHLFEKANKM-KM 158 (720)
Q Consensus 138 il~~~~~~~~~~l~~a~~~-g~ 158 (720)
++.+.-.+-...++.+++. |.
T Consensus 113 vLvSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 113 ILVSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp EEECCCGGGHHHHHHHHHHHCC
T ss_pred EEEECChhHHHHHHHHHHHcCc
Confidence 8877666888888889984 86
No 318
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=42.24 E-value=69 Score=27.82 Aligned_cols=66 Identities=9% Similarity=0.010 Sum_probs=45.5
Q ss_pred CCCeEEEEEEEcCCCcc---cCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhc-CCCeEEEEEc
Q 043468 74 WEWHQVTVIYEDIDSSA---TGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKG-GQCRVFVVHL 141 (720)
Q Consensus 74 ~~~~~v~ii~~~~~~g~---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~-~~~~vvil~~ 141 (720)
+..-+++||...|.-|. .. ...+.+.+++.|+++.....++.... .+.+.+++..+ .++|+|+..+
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn-~~~l~~~L~~~G~~v~~~~iv~Dd~~-~i~~~l~~~~~~~~~DlVittG 80 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKS-GQLLHELLKEAGHKVTSYEIVKDDKE-SIQQAVLAGYHKEDVDVVLTNG 80 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHH-HHHHHHHHHHHTCEEEEEEEECSSHH-HHHHHHHHHHTCTTCSEEEEEC
T ss_pred ccCCEEEEEEEcCccCeeccCh-HHHHHHHHHHCCCeEeEEEEeCCCHH-HHHHHHHHHHhcCCCCEEEEcC
Confidence 34458999987776431 12 46788889999999888777765433 66667776654 3789988765
No 319
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=42.14 E-value=47 Score=30.30 Aligned_cols=82 Identities=9% Similarity=-0.025 Sum_probs=55.0
Q ss_pred CCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEee
Q 043468 345 KDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVG 423 (720)
Q Consensus 345 ~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~ 423 (720)
..++|+||+.. .+. ..+..+++..+.++. +.++++.. ++...++..|.+|++|+++.
T Consensus 25 ~~g~l~Ig~~~--~~~----------------~~~l~~~l~~f~~~~P~i~l~i~~----~~~~~~~~~L~~g~~Dl~i~ 82 (238)
T 3onm_A 25 MEGSLIIGASD--DTA----------------DTLLPFLLNRVATLYPRLAIDVRV----KRSPFIADMLSSGEVDLAIT 82 (238)
T ss_dssp --CCEEEEECH--HHH----------------TTHHHHHHHHHHHHCTTCCEEEEE----CCHHHHHHHHHHTSCSEEEE
T ss_pred CceeEEEeccc--hhh----------------HHHHHHHHHHHHHHCCCcEEEEEE----CCHHHHHHHHHCCCccEEEE
Confidence 45789999932 111 145677888888776 45544443 34688999999999999985
Q ss_pred eeeeeccceeeeeecccccccceEEEEeccc
Q 043468 424 DVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 424 ~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.... + .+ -+.++....+++++++..
T Consensus 83 ~~~~-~----~~-~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 83 TAKV-D----SH-PHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp CSCC------CC-CEEEEEEECEEEEEETTC
T ss_pred ecCC-C----Cc-ceEEeecCCEEEEEcCCC
Confidence 4332 1 12 346888889999998775
No 320
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=42.00 E-value=11 Score=35.89 Aligned_cols=110 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccC-CCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKK-QIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVT 80 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~-~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ 80 (720)
+.+++.++.+|+=+.+++.+.++-.+-+.. ++|+|+ ..++.++. ..+.++|+
T Consensus 63 ~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig-------------------------iiep~~~~--~~~~~~IG 115 (268)
T 3out_A 63 KFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID-------------------------VITAGVSL--VDNLNTVG 115 (268)
T ss_dssp HHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE-------------------------HHHHHHHT--TTTCSEEE
T ss_pred HHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe-------------------------ccHHHHHH--hccCCeEE
Q ss_pred EEEEcCC-CcccCcHHHHHHHHHHcCcEEEEE--------EecCCCCcc------cHHHHHHHhhcCCCeEEEEEcCH
Q 043468 81 VIYEDID-SSATGILPHLSDALREAGAEIIHV--------LALPHFPSS------RLSEELEKLKGGQCRVFVVHLSL 143 (720)
Q Consensus 81 ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~--------~~~~~~~~~------d~~~~l~~i~~~~~~vvil~~~~ 143 (720)
|+..... . ...+++.+++.|..+... ..+..+... .+..+++.+++.++|.||+.|..
T Consensus 116 VLaT~~Ti~-----s~~y~~~l~~~~~~~~V~~~~~~~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iILGCTh 188 (268)
T 3out_A 116 VIATPATIN-----SNAYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVSGHIVELVAKEYLSYFHDKNIQALILGCTH 188 (268)
T ss_dssp EEECHHHHH-----HTHHHHHHHHHCTTSEEEEEECTTHHHHHHTTCCSSHHHHHHHHHHHGGGTTSCCSEEEECSTT
T ss_pred EEecCcccc-----cHHHHHHHHHhCCCCEEecCCChHHHHHHHcCCcCCHHHHHHHHHHHHHHHhCCCCEEEECCCC
No 321
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=41.97 E-value=15 Score=35.25 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=51.9
Q ss_pred CCCeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHH
Q 043468 74 WEWHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEK 152 (720)
Q Consensus 74 ~~~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~ 152 (720)
.+-++|+++..+.. .....+.+.+++.+++.|.++..... ..+.......++.+.+.++|.||+..... ....++.
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT--AEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC--CCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 34568899886543 12233478899999999998765432 12221455677778888999988866433 3445555
Q ss_pred HHHcCC
Q 043468 153 ANKMKM 158 (720)
Q Consensus 153 a~~~g~ 158 (720)
+.+.|.
T Consensus 83 ~~~~~i 88 (291)
T 3egc_A 83 ELPKTF 88 (291)
T ss_dssp SSCTTS
T ss_pred hhccCC
Confidence 555555
No 322
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=41.92 E-value=61 Score=26.69 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHH
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANK 155 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~ 155 (720)
...+.+.+++.|.+|... . +....+..+....+|+|++.. ...+...+++..++
T Consensus 21 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 21 LAASISALSQEGFDIIQC---G-----NAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp GHHHHHHHHHHTEEEEEE---S-----SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEe---C-----CHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 788888898889866521 1 455566666667899999975 34566778888887
No 323
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=41.88 E-value=45 Score=29.49 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=46.0
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+..+++..+.++. +.+ +.... ++...+.++|.+|++|+++....... ..+. +.++....+++++++..
T Consensus 18 ~~l~~~l~~f~~~~P~i~--i~l~~--~~~~~l~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 18 TILPSMLYAFTAEYPRAS--VEFRE--DTQNRLRTQLEGGELDVAIVYDLDLS---PEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp TTHHHHHHHHHHHCTTEE--EEEEE--CCHHHHHHHHHTTSCSEEEEESSSCC---TTEE-EEEEEEECCEEEEETTC
T ss_pred hhHHHHHHHHHHHCCCce--EEEEE--CcHHHHHHHHHcCCccEEEEecCCCC---CCce-EEEeecCceEEEEeCCC
Confidence 45567888888877 444 44333 24678999999999999985432111 2232 35788888888888664
No 324
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=40.97 E-value=80 Score=25.71 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc-CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL-SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~-~~~~~~~~l~~a~~~g~ 158 (720)
...+++.+++.|.++... . +....+..+.+..+|+|++.. .+.+...++++.++..-
T Consensus 17 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~ 74 (142)
T 2qxy_A 17 FLAVKNALEKDGFNVIWA---K-----NEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFP 74 (142)
T ss_dssp HHHHHHHHGGGTCEEEEE---S-----SHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCEEEEE---C-----CHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCC
Confidence 678888898899876521 1 566777788888999999875 44566778888887643
No 325
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=40.79 E-value=72 Score=32.13 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=66.0
Q ss_pred CeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCc----ccHHHHH
Q 043468 51 PFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPS----SRLSEEL 126 (720)
Q Consensus 51 ~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~----~d~~~~l 126 (720)
+|-..+.+....+. . +++..+.+++.|+++..... . +.+.+.+.+++.|+++.... ++.+.. +.....+
T Consensus 41 ~y~I~~G~g~l~~l---~-~l~~~~~~rvlIVtd~~v~~-~-~~~~v~~~L~~~g~~~~~~~-~~~gE~~kt~~~v~~~~ 113 (390)
T 3okf_A 41 SYPISIGAGLFANP---A-LLSLSAKQKVVIVTNHTVAP-L-YAPAIISLLDHIGCQHALLE-LPDGEQYKTLETFNTVM 113 (390)
T ss_dssp CEEEEEETTGGGCG---G-GGCCCTTCEEEEEEETTTHH-H-HHHHHHHHHHHHTCEEEEEE-ECSSGGGCBHHHHHHHH
T ss_pred CCCEEEeCCHHHhH---H-HHHhcCCCEEEEEECCcHHH-H-HHHHHHHHHHHcCCeEEEEE-ECCCcCCchHHHHHHHH
Confidence 56666666643322 2 44455678999998776542 2 47899999999998764332 333322 1566777
Q ss_pred HHhhcCCC---eEEEEEc--CHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 043468 127 EKLKGGQC---RVFVVHL--SLELAVHLFEKANKMKMMEKDYIWITTD 169 (720)
Q Consensus 127 ~~i~~~~~---~vvil~~--~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 169 (720)
+.+++.++ |+||..+ ..-|+..++......|. .++-+-|.
T Consensus 114 ~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rgi---p~I~IPTT 158 (390)
T 3okf_A 114 SFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRGV---DFIQIPTT 158 (390)
T ss_dssp HHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTCC---EEEEEECS
T ss_pred HHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCCC---CEEEeCCC
Confidence 77777766 6766544 34566666655444554 44444444
No 326
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=40.59 E-value=2.1e+02 Score=27.38 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=45.5
Q ss_pred EEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+...++..+.++.. .+++.... ++...++..|.+|++|+++...... ....+. +.++.....++++++..
T Consensus 106 ~~l~~~l~~f~~~~P-~v~i~l~~--~~~~~~~~~l~~g~~Dlai~~~~~~--~~~~l~-~~~L~~~~~~~v~~~~~ 176 (324)
T 1al3_A 106 YALPGVIKGFIERYP-RVSLHMHQ--GSPTQIAEAVSKGNADFAIATEALH--LYDDLV-MLPCYHWNRSIVVTPEH 176 (324)
T ss_dssp HTSHHHHHHHHHHCT-EEEEEEEE--CCHHHHHHHHHTTCCSEEEESSCCC--TTSCEE-EEEEEEECEEEEECTTS
T ss_pred hHHHHHHHHHHHHCC-CCEEEEEE--CCHHHHHHHHHCCCceEEEEecCCC--CCCCee-EEEecCCceEEEEcCCC
Confidence 455678888887763 23344333 2457899999999999998542221 112222 35777888888887664
No 327
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=40.48 E-value=23 Score=34.52 Aligned_cols=80 Identities=10% Similarity=-0.004 Sum_probs=49.6
Q ss_pred eEEEEEEEcCC--CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc-CHHHHHHHHHHH
Q 043468 77 HQVTVIYEDID--SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL-SLELAVHLFEKA 153 (720)
Q Consensus 77 ~~v~ii~~~~~--~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~-~~~~~~~~l~~a 153 (720)
++|+++..+.. +. ..+.+.+++.+++.|+++..... ...+.....++++.+.+.++|.|++.. ........++.+
T Consensus 4 ~~Igvi~~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~~~-~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFF-TSGGNGAQEAGKALGIDVTYDGP-TEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHH-HHHHHHHHHHHHHHTCEEEECCC-SSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHH-HHHHHHHHHHHHHhCCEEEEECC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 57888875432 32 23467888888999987653211 111111344567777778999988755 344445677888
Q ss_pred HHcCC
Q 043468 154 NKMKM 158 (720)
Q Consensus 154 ~~~g~ 158 (720)
.+.|.
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 88776
No 328
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=40.27 E-value=94 Score=30.15 Aligned_cols=64 Identities=17% Similarity=0.058 Sum_probs=44.2
Q ss_pred CeEEEEEEE--c--CCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC
Q 043468 76 WHQVTVIYE--D--IDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS 142 (720)
Q Consensus 76 ~~~v~ii~~--~--~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~ 142 (720)
-.+|+++++ + +......+.+.+++.+++.|.++...... ... +....++.+.+.++|.||+.+.
T Consensus 4 ~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~~--~~~-~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 4 DFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTAS--TDA-EYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECC--SGG-GHHHHHHHHHHTTCSEEEEEST
T ss_pred CcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeCC--CHH-HHHHHHHHHHHcCCCEEEECCh
Confidence 358999986 2 21222334678888889999987665442 222 6778888888889999998753
No 329
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=40.23 E-value=1.9e+02 Score=27.37 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=58.8
Q ss_pred HHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc---
Q 043468 65 KAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--- 141 (720)
Q Consensus 65 ~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--- 141 (720)
..++......|..-+.++.+...++ +-.+.++..-+..++-|..-. +-.. .+ ++.+.+..++|.|++..
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~--Gs~~~L~~ir~~v~lPVl~Kd-fi~d---~~--qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQ--GAPEFLTAARQACSLPALRKD-FLFD---PY--QVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTC--CCHHHHHHHHHTSSSCEEEES-CCCS---TH--HHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHHCCCCEEEEeccccccC--CCHHHHHHHHHhcCCCEEECC-ccCC---HH--HHHHHHHcCCCEEEEccccc
Confidence 4566666778999999997666553 225666655555666554322 2111 22 57778889999998865
Q ss_pred CHHHHHHHHHHHHHcCC
Q 043468 142 SLELAVHLFEKANKMKM 158 (720)
Q Consensus 142 ~~~~~~~~l~~a~~~g~ 158 (720)
+..++..++..++++||
T Consensus 154 ~~~~l~~l~~~a~~lGl 170 (272)
T 3tsm_A 154 DDDLAKELEDTAFALGM 170 (272)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 56788999999999998
No 330
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=40.14 E-value=31 Score=29.09 Aligned_cols=86 Identities=13% Similarity=0.242 Sum_probs=54.8
Q ss_pred CeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCc-c--cHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHH
Q 043468 76 WHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPS-S--RLSEELEKLKGGQCRVFVVHLSLELAVHLFEK 152 (720)
Q Consensus 76 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~--d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~ 152 (720)
.++|+||...+..|.. -..+.+.+.+.|.+|.... |.... . ..-+-+.++. ..+|++++......+..++++
T Consensus 22 p~~iaVVGas~~~g~~--G~~~~~~l~~~G~~v~~Vn--p~~~~i~G~~~y~sl~~l~-~~vDlvvi~vp~~~~~~vv~~ 96 (144)
T 2d59_A 22 YKKIALVGASPKPERD--ANIVMKYLLEHGYDVYPVN--PKYEEVLGRKCYPSVLDIP-DKIEVVDLFVKPKLTMEYVEQ 96 (144)
T ss_dssp CCEEEEETCCSCTTSH--HHHHHHHHHHTTCEEEEEC--TTCSEETTEECBSSGGGCS-SCCSEEEECSCHHHHHHHHHH
T ss_pred CCEEEEEccCCCCCch--HHHHHHHHHHCCCEEEEEC--CCCCeECCeeccCCHHHcC-CCCCEEEEEeCHHHHHHHHHH
Confidence 4689999766555433 3455567888898744332 11110 0 0011123332 368999999999999999999
Q ss_pred HHHcCCCCCCeEEEEeC
Q 043468 153 ANKMKMMEKDYIWITTD 169 (720)
Q Consensus 153 a~~~g~~~~~~~~i~~~ 169 (720)
+.+.|. ..+|+.++
T Consensus 97 ~~~~gi---~~i~~~~g 110 (144)
T 2d59_A 97 AIKKGA---KVVWFQYN 110 (144)
T ss_dssp HHHHTC---SEEEECTT
T ss_pred HHHcCC---CEEEECCC
Confidence 999987 56776543
No 331
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=40.07 E-value=52 Score=26.76 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC-------HHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS-------LELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~-------~~~~~~~l~~a~~~g 157 (720)
.+.+++.+++.|.++... . +....+..+.+..+|+|++... ..+...++++.++..
T Consensus 16 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 16 LTAVQLLLKNHFSKVITL---S-----SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp HHHHHHHHTTTSSEEEEE---C-----CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCcEEEEe---C-----CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 678888888888876532 1 5556667777778999999764 446677788887754
No 332
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=39.89 E-value=23 Score=32.17 Aligned_cols=72 Identities=11% Similarity=0.012 Sum_probs=45.6
Q ss_pred eHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCC-ccEEeeeeeeecc---ceeeee--ecccccccceEEEEecc
Q 043468 380 SIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNN-FAGVVGDVAIVAR---RCQYAD--FTHPYTESGLVMIFPVQ 453 (720)
Q Consensus 380 ~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~-~Di~~~~~~~t~~---r~~~~~--fs~p~~~~~~~~~v~~~ 453 (720)
.-+++..+.++-|.++++.. ++-..++..|.+|+ +|+++..-....+ ....+. -..|+....+++++++.
T Consensus 14 l~~~~~~F~~~p~i~v~~~~----~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~~ 89 (231)
T 1atg_A 14 LEQLAGQFAKQTGHAVVISS----GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLWSAKP 89 (231)
T ss_dssp HHHHHHHHHHHHCCCEEEEE----ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEEEESST
T ss_pred HHHHHHHHHhccCCeEEEEE----CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEEEEcCC
Confidence 34677777777777765543 23478999999998 9998753211111 111111 24688888999999877
Q ss_pred cC
Q 043468 454 KS 455 (720)
Q Consensus 454 ~~ 455 (720)
..
T Consensus 90 ~~ 91 (231)
T 1atg_A 90 GL 91 (231)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 333
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=39.69 E-value=60 Score=25.14 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC--HHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS--LELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~--~~~~~~~l~~a~~~g 157 (720)
.+.+.+.+++.|.++... . +....+..+.+..+|+|++... ..+...++++.++..
T Consensus 14 ~~~l~~~l~~~g~~v~~~---~-----~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 14 ATVVCEMLTAAGFKVIWL---V-----DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCcEEEEe---c-----CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 678888899999876432 1 4445566666668999998763 445677888888764
No 334
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=39.53 E-value=38 Score=33.59 Aligned_cols=82 Identities=10% Similarity=0.132 Sum_probs=50.6
Q ss_pred CCCeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHH
Q 043468 74 WEWHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEK 152 (720)
Q Consensus 74 ~~~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~ 152 (720)
..-+.|+++..+.. ..-..+.+.+++.+++.|..+..... ..+.......++.+.+.++|.||+...... ...++.
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~~~~ 144 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT--AYSPEREEQLVETMLRRRPEAMVLSYDGHT-EQTIRL 144 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHHHHHHHTCCSEEEEECSCCC-HHHHHH
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 34457999886533 11123478899999999998765432 122214456777777889999888653322 245666
Q ss_pred HHHcCC
Q 043468 153 ANKMKM 158 (720)
Q Consensus 153 a~~~g~ 158 (720)
+.+.++
T Consensus 145 l~~~~i 150 (355)
T 3e3m_A 145 LQRASI 150 (355)
T ss_dssp HHHCCS
T ss_pred HHhCCC
Confidence 777776
No 335
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=39.48 E-value=39 Score=29.25 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=41.9
Q ss_pred EEEEEEEcCC--Cc---ccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC-CCeEEEEEc
Q 043468 78 QVTVIYEDID--SS---ATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG-QCRVFVVHL 141 (720)
Q Consensus 78 ~v~ii~~~~~--~g---~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~-~~~vvil~~ 141 (720)
+++||...|. .| +.. ...+.+.+++.|+++.....++.... .+.+.+++..+. ++|+|+..+
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n-~~~l~~~l~~~G~~v~~~~iv~Dd~~-~i~~~l~~~~~~~~~DlVittG 70 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTT-HLAIREVLAGGPFEVAAYELVPDEPP-MIKKVLRLWADREGLDLILTNG 70 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCH-HHHHHHHHTTSSEEEEEEEEECSCHH-HHHHHHHHHHHTSCCSEEEEES
T ss_pred EEEEEEEcCcccCCCcccch-HHHHHHHHHHCCCeEeEEEEcCCCHH-HHHHHHHHHHhcCCCCEEEEcC
Confidence 5777766543 11 122 56788889999999888777765433 666777766544 789988865
No 336
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=39.08 E-value=57 Score=26.42 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCC-CeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQ-CRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~-~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...+++.+++.|.++... . +....+..+.... +|+|++.. .+.+...++++.++.+
T Consensus 20 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 20 REALILYLKSRGIDAVGA---D-----GAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp HHHHHHHHHHTTCCEEEE---S-----SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHcCceEEEe---C-----CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC
Confidence 678888999989876542 1 4555666666565 99999865 4566778888888764
No 337
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=38.96 E-value=50 Score=32.33 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=64.3
Q ss_pred ecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeE
Q 043468 57 SQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRV 136 (720)
Q Consensus 57 ~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~v 136 (720)
.|+....++.+.++++..+.++|.|..+.+. +.+.+++.++..+++|+. +++. .+++...--+.+|.
T Consensus 261 lPSle~I~rqIk~~vk~~~lksVFIATDa~~-----~~~ELk~~L~~~~v~vv~---~~pe-----~a~ID~~I~~~A~~ 327 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIGAKSVFVASDKDH-----MIDEINEALKPYEIEAHR---QEPD-----DMYTSLAIMGRADL 327 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSEEEEEESSCC-----CHHHHHHHHGGGTCCEEC---CSSC-----CHHHHHHHHHHSSE
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEecCCHH-----HHHHHHHHhhccCceEEE---eCCc-----hhHHHHHHHHhCCE
Confidence 4899999999999999889888887764332 288999999887876643 2322 24555555577999
Q ss_pred EEEEcCHHHHHHHHHHHHHcC
Q 043468 137 FVVHLSLELAVHLFEKANKMK 157 (720)
Q Consensus 137 vil~~~~~~~~~~l~~a~~~g 157 (720)
+|..|...-...+.++=.-.|
T Consensus 328 FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 328 FVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp EEECTTCHHHHHHHHHHHHSS
T ss_pred eecCccccccHHHHHHHHhcC
Confidence 888887777777766655566
No 338
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=38.95 E-value=41 Score=32.12 Aligned_cols=80 Identities=14% Similarity=0.057 Sum_probs=49.1
Q ss_pred CCeEEEEEEEcCC--CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHH---HHHHhhcCCCeEEEEEcCHHHHHHH
Q 043468 75 EWHQVTVIYEDID--SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSE---ELEKLKGGQCRVFVVHLSLELAVHL 149 (720)
Q Consensus 75 ~~~~v~ii~~~~~--~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~---~l~~i~~~~~~vvil~~~~~~~~~~ 149 (720)
.-++|+++..+.. +. ..+.+.+++.+++.|.++..... . .+...... .++.+.+.++|.|++.....+ ...
T Consensus 7 ~~~~Ig~i~~~~~~~~~-~~~~~gi~~~a~~~g~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~ 82 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYY-GTILKQTDLELRAVHRHVVVATG-C-GESTPREQALEAVRFLIGRDCDGVVVISHDLH-DED 82 (290)
T ss_dssp -CCEEEEECSCSCSHHH-HHHHHHHHHHHHHTTCEEEEECC-C-SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHH
T ss_pred CCCeEEEEeCCCCCchH-HHHHHHHHHHHHHCCCEEEEEeC-C-CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHH
Confidence 3457888876432 22 23478888899999998764321 1 22213445 777888889999888653222 244
Q ss_pred HHHHHHcCC
Q 043468 150 FEKANKMKM 158 (720)
Q Consensus 150 l~~a~~~g~ 158 (720)
++.+.+.|.
T Consensus 83 ~~~l~~~~i 91 (290)
T 2rgy_A 83 LDELHRMHP 91 (290)
T ss_dssp HHHHHHHCS
T ss_pred HHHHhhcCC
Confidence 566666666
No 339
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=38.84 E-value=14 Score=30.24 Aligned_cols=85 Identities=9% Similarity=0.113 Sum_probs=55.8
Q ss_pred CCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcc----cHHHHHHHhhcCCCeEEEEEcCHHHHHHHH
Q 043468 75 EWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSS----RLSEELEKLKGGQCRVFVVHLSLELAVHLF 150 (720)
Q Consensus 75 ~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~----d~~~~l~~i~~~~~~vvil~~~~~~~~~~l 150 (720)
+.++|+|+..++..+.. ...+.+.+.+.|.+|.... +...+ ..-+-+..+.. +|.++++...+....++
T Consensus 3 ~p~siAVVGaS~~~~~~--g~~v~~~L~~~g~~V~pVn---P~~~~i~G~~~y~sl~dlp~--vDlavi~~p~~~v~~~v 75 (122)
T 3ff4_A 3 AMKKTLILGATPETNRY--AYLAAERLKSHGHEFIPVG---RKKGEVLGKTIINERPVIEG--VDTVTLYINPQNQLSEY 75 (122)
T ss_dssp CCCCEEEETCCSCTTSH--HHHHHHHHHHHTCCEEEES---SSCSEETTEECBCSCCCCTT--CCEEEECSCHHHHGGGH
T ss_pred CCCEEEEEccCCCCCCH--HHHHHHHHHHCCCeEEEEC---CCCCcCCCeeccCChHHCCC--CCEEEEEeCHHHHHHHH
Confidence 45789999876665433 4666667777888654432 11110 11112233443 89999999999999999
Q ss_pred HHHHHcCCCCCCeEEEEeC
Q 043468 151 EKANKMKMMEKDYIWITTD 169 (720)
Q Consensus 151 ~~a~~~g~~~~~~~~i~~~ 169 (720)
+++.+.|. ..+|+.++
T Consensus 76 ~e~~~~g~---k~v~~~~G 91 (122)
T 3ff4_A 76 NYILSLKP---KRVIFNPG 91 (122)
T ss_dssp HHHHHHCC---SEEEECTT
T ss_pred HHHHhcCC---CEEEECCC
Confidence 99999997 45776543
No 340
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=38.60 E-value=2.4e+02 Score=31.17 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=55.1
Q ss_pred eEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc----CHHHHHHHHHH
Q 043468 77 HQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL----SLELAVHLFEK 152 (720)
Q Consensus 77 ~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~----~~~~~~~~l~~ 152 (720)
.+|.+-.-..+...-+ .+-+...++..|++|+.- .... ..+..++..++.++|+|.+++ .......+++.
T Consensus 605 ~kVvlatvg~D~HdiG-~~iVa~~l~~~GfeVi~l----G~~v-~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~ 678 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRG-AKVIATGFADLGFDVDIG----PLFQ-TPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKE 678 (762)
T ss_dssp CEEEEECCSSCCCCHH-HHHHHHHHHHTTCEEEEC----CTTC-CHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHH
T ss_pred CEEEEEecCcchhhHH-HHHHHHHHHhCCeEEeeC----CCCC-CHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHH
Confidence 3555544444443344 777888899999998762 2222 678899999999999999876 34567778888
Q ss_pred HHHcCCC
Q 043468 153 ANKMKMM 159 (720)
Q Consensus 153 a~~~g~~ 159 (720)
+++.|+.
T Consensus 679 Lr~~G~~ 685 (762)
T 2xij_A 679 LNSLGRP 685 (762)
T ss_dssp HHHTTCT
T ss_pred HHhcCCC
Confidence 9999885
No 341
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=38.37 E-value=30 Score=33.57 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=35.7
Q ss_pred cchhhhhhh-----hccCCc-ccccchh------HHHHHHHHHHHHHHHhhhhhhhhhhh
Q 043468 504 TGTFFWLSF-----NLHGEK-LHSNLSR------MTTLVWLFVALVISQTYTANLTSMLT 551 (720)
Q Consensus 504 ~~~~~~~~~-----~~~g~~-~~~~~~R------~~~~~~~l~~~ii~~~y~a~L~s~l~ 551 (720)
+.+++|+++ .+.|+. |.+..+| ++.++|+++++.+.+...+.+...+.
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888 555664 5555665 69999999999888887777766654
No 342
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=38.31 E-value=16 Score=33.22 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=27.8
Q ss_pred eEEEECCCCChhhHHHHHhhccCCCcEEecc
Q 043468 9 VEAILGPQTSEETSSVAEIASKKQIPVLSFA 39 (720)
Q Consensus 9 v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~ 39 (720)
+.+++||..|+-......+++.+++|+||.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4578999999999999999999999999865
No 343
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=38.15 E-value=27 Score=31.72 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCeEEEEEEEcCC--CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC
Q 043468 65 KAIAAIVQSWEWHQVTVIYEDID--SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS 142 (720)
Q Consensus 65 ~~~~~~l~~~~~~~v~ii~~~~~--~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~ 142 (720)
..+.+++.....++|++|-.... .. ....+.+++.+++.|.++.... +.. . +.....+.++ ++|.|++.+
T Consensus 16 ~~~~~f~~~~~~~~i~~Ip~As~~~~~-~~~~~s~~~a~~~lG~~v~~~~-i~~--~-~~~~~~~~l~--~ad~I~l~G- 87 (206)
T 3l4e_A 16 PLFTEFESNLQGKTVTFIPTASTVEEV-TFYVEAGKKALESLGLLVEELD-IAT--E-SLGEITTKLR--KNDFIYVTG- 87 (206)
T ss_dssp HHHHHHSCCCTTCEEEEECGGGGGCSC-CHHHHHHHHHHHHTTCEEEECC-TTT--S-CHHHHHHHHH--HSSEEEECC-
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCH-HHHHHHHHHHHHHcCCeEEEEE-ecC--C-ChHHHHHHHH--hCCEEEECC-
Confidence 33444555555689998853322 11 2347899999999999755432 211 2 4444445554 478888866
Q ss_pred HHHHHHHHHHHHHcCCC-------CCCeEEEEeCc
Q 043468 143 LELAVHLFEKANKMKMM-------EKDYIWITTDA 170 (720)
Q Consensus 143 ~~~~~~~l~~a~~~g~~-------~~~~~~i~~~~ 170 (720)
|+ ...+++.+++.|+. ..+.++++++.
T Consensus 88 G~-~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 88 GN-TFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp SC-HHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred CC-HHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 22 22444444444431 01347777765
No 344
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=38.14 E-value=22 Score=34.05 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=49.5
Q ss_pred HHhCCCeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHH
Q 043468 71 VQSWEWHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHL 149 (720)
Q Consensus 71 l~~~~~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~ 149 (720)
++...-++|+++..+.. ..-..+.+.+++.+++.|.++..... ..+.......++.+.+.++|.|++..........
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~ 92 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS--EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPF 92 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHH
T ss_pred hhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHH
Confidence 33444568999986532 11133478888899999998765321 1221134456777777899998886533222234
Q ss_pred HHHHHHcCC
Q 043468 150 FEKANKMKM 158 (720)
Q Consensus 150 l~~a~~~g~ 158 (720)
++.+.+.+.
T Consensus 93 ~~~~~~~~i 101 (293)
T 2iks_A 93 YQRWANDPF 101 (293)
T ss_dssp HHTTTTSSS
T ss_pred HHHHHhCCC
Confidence 555555554
No 345
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=37.90 E-value=1.6e+02 Score=23.73 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC--HHHHHHHHHHHHH
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS--LELAVHLFEKANK 155 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~--~~~~~~~l~~a~~ 155 (720)
.+.+++.+++.|.+|... . +....+..+++..+|+|++... ..+...++++.++
T Consensus 20 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 20 RIAVKTILSDAGFHIISA---D-----SGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEEEe---C-----CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 788888999989865421 1 5566777787788999999763 4466778888887
No 346
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=37.78 E-value=73 Score=26.00 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhh--cCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLK--GGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~--~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
.+.+++.+++.|..+... . +....+..+. ...+|+|++.. ...+...+++++++..
T Consensus 16 ~~~l~~~l~~~g~~v~~~---~-----~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 75 (143)
T 3jte_A 16 LQNIKFLLEIDGNEVLTA---S-----SSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKIT 75 (143)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCceEEEe---C-----CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhC
Confidence 788899999999765432 1 4555666666 56899999976 3455677777777764
No 347
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=37.57 E-value=47 Score=31.59 Aligned_cols=79 Identities=5% Similarity=0.099 Sum_probs=49.9
Q ss_pred eEEEEEEEcCC--CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC-HHHHHHHHHHH
Q 043468 77 HQVTVIYEDID--SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS-LELAVHLFEKA 153 (720)
Q Consensus 77 ~~v~ii~~~~~--~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~-~~~~~~~l~~a 153 (720)
++|+++..+.. ++ ..+.+.+++.+++.|.++..... ..+.......++.+.+.++|.|++... .+.....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~-~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWF-VVLAETAKQRAEQLGYEATIFDS--QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHH-HHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHH-HHHHHHHHHHHHHcCCEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 47888876532 32 33478888999999998765322 122113445677777789998887653 33334566777
Q ss_pred HHcCC
Q 043468 154 NKMKM 158 (720)
Q Consensus 154 ~~~g~ 158 (720)
.+.+.
T Consensus 80 ~~~~i 84 (290)
T 2fn9_A 80 KEAGI 84 (290)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77765
No 348
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=37.54 E-value=74 Score=26.45 Aligned_cols=58 Identities=7% Similarity=0.035 Sum_probs=40.5
Q ss_pred HHHHHHHHHH-cCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALRE-AGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~-~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
.+.++..+++ .|.++.... . +....+..+....+|+|++.. .+.+...++++.++..-
T Consensus 18 ~~~l~~~L~~~~~~~v~~~~--~-----~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 78 (153)
T 3cz5_A 18 REGYRRLIERRPGYAVVAEA--A-----DAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDG 78 (153)
T ss_dssp HHHHHHHHTTSTTEEEEEEE--S-----SHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhCCCcEEEEEe--C-----CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCC
Confidence 6788888887 687765321 1 556677777778899999865 34456777888777643
No 349
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=37.47 E-value=58 Score=30.40 Aligned_cols=94 Identities=10% Similarity=0.067 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCCeEEEEEEEcC--CCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc
Q 043468 64 MKAIAAIVQSWEWHQVTVIYEDI--DSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL 141 (720)
Q Consensus 64 ~~~~~~~l~~~~~~~v~ii~~~~--~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~ 141 (720)
....++.++..|.+-|-+....- ...... .+.+++.+++.|+++...........+.+...++..+.-+++.|++..
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~-~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~p 110 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQ-IRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGVP 110 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHH-HHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHH-HHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEecC
Confidence 45667778888988887663311 111122 578999999999988765443222222566666666666777777665
Q ss_pred CHHHHHHHHHHHHHcCC
Q 043468 142 SLELAVHLFEKANKMKM 158 (720)
Q Consensus 142 ~~~~~~~~l~~a~~~g~ 158 (720)
..+....+...|.+.|+
T Consensus 111 ~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 111 NYELLPYVDKKVKEYDF 127 (257)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 55556666666666665
No 350
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=37.40 E-value=49 Score=31.72 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=49.8
Q ss_pred eEEEEEEEcCC--CcccCcHHHHHHHHHHcCc-EEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc-CHHHHHHHHHH
Q 043468 77 HQVTVIYEDID--SSATGILPHLSDALREAGA-EIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL-SLELAVHLFEK 152 (720)
Q Consensus 77 ~~v~ii~~~~~--~g~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~-~~~~~~~~l~~ 152 (720)
++|+++..+.. +. ..+.+.+++.+++.|. ++..... ..+.......++.+.+.++|.|++.. ........++.
T Consensus 3 ~~Igvi~~~~~~~~~-~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~ 79 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFM-SVVRKAIEQDAKAAPDVQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 79 (309)
T ss_dssp EEEEEEESCTTSHHH-HHHHHHHHHHHHTCTTEEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeccCCcHHH-HHHHHHHHHHHHhcCCeEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH
Confidence 57888876432 22 2347888889999997 7654322 11211345567777778999988865 33334566777
Q ss_pred HHHcCC
Q 043468 153 ANKMKM 158 (720)
Q Consensus 153 a~~~g~ 158 (720)
+.+.|.
T Consensus 80 ~~~~~i 85 (309)
T 2fvy_A 80 ARGQNV 85 (309)
T ss_dssp HHTTTC
T ss_pred HHHCCC
Confidence 777665
No 351
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=37.11 E-value=42 Score=29.18 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=38.2
Q ss_pred EEEEEEEcCC--Cc---ccCcHHHHHHH----HHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc
Q 043468 78 QVTVIYEDID--SS---ATGILPHLSDA----LREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL 141 (720)
Q Consensus 78 ~v~ii~~~~~--~g---~~~~~~~~~~~----~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~ 141 (720)
+++||...|. .| +.. ...+.+. +++.|+++.....++.... .+.+.+++..+.++|+|+..+
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n-~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~-~I~~~l~~a~~~~~DlVittG 77 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKA-LPLLQRLMSDELQDYSYELISEVVVPEGYD-TVVEAIATALKQGARFIITAG 77 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCH-HHHHHHHHCC----CEEEEEEEEEECSSHH-HHHHHHHHHHHTTCSEEEEES
T ss_pred EEEEEEECCcccCCceeccH-HHHHHHhHHhHHHHCCCEEeEEEEeCCCHH-HHHHHHHHHHhCCCCEEEECC
Confidence 6777776554 12 122 4677778 8899998887776665333 566666666554689988765
No 352
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=36.97 E-value=21 Score=34.58 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=47.5
Q ss_pred EEeHHHHHHHHHh---C---CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccce--eeeee-cc-cccccceE
Q 043468 378 GFSIELFKALVEK---L---PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRC--QYADF-TH-PYTESGLV 447 (720)
Q Consensus 378 G~~~dl~~~la~~---l---~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~--~~~~f-s~-p~~~~~~~ 447 (720)
.+..+++..+.++ . +.++++.. ++...++.+|.+|++|+++..-....+.. +.+.+ .. ++....++
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~v~l~~----~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~~d~lv 108 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFKVAWYK----SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAFRDHFM 108 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CEEEEEE----CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEEEEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCCeEEEEEe----CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEEeccEE
Confidence 4567889999888 7 66654443 34588999999999999975322211110 11122 24 78888899
Q ss_pred EEEeccc
Q 043468 448 MIFPVQK 454 (720)
Q Consensus 448 ~~v~~~~ 454 (720)
+++++..
T Consensus 109 lv~~~~h 115 (294)
T 3cvg_A 109 LIGPPSN 115 (294)
T ss_dssp EEECTTC
T ss_pred EEecCCC
Confidence 9988765
No 353
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=36.77 E-value=17 Score=30.57 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=56.1
Q ss_pred CeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCC-CCc-c--cHHHHHHHhhcCCCeEEEEEcCHHHHHHHHH
Q 043468 76 WHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPH-FPS-S--RLSEELEKLKGGQCRVFVVHLSLELAVHLFE 151 (720)
Q Consensus 76 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~-~~~-~--d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~ 151 (720)
.++|+|+...+..|.. -..+-+.+.+.|.+|..... .. ... . ..-+-+.++. ..+|+++++...+.+..+++
T Consensus 13 p~~vaVvGas~~~g~~--G~~~~~~l~~~G~~v~~vnp-~~~~~~i~G~~~~~sl~el~-~~vDlavi~vp~~~~~~v~~ 88 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRP--AHYVPRYLREQGYRVLPVNP-RFQGEELFGEEAVASLLDLK-EPVDILDVFRPPSALMDHLP 88 (140)
T ss_dssp CCEEEEETCCSSTTSH--HHHHHHHHHHTTCEEEEECG-GGTTSEETTEECBSSGGGCC-SCCSEEEECSCHHHHTTTHH
T ss_pred CCEEEEECCCCCCCCh--HHHHHHHHHHCCCEEEEeCC-CcccCcCCCEEecCCHHHCC-CCCCEEEEEeCHHHHHHHHH
Confidence 5789999776655433 35566668889987443322 10 111 0 1111233333 37899999999999999999
Q ss_pred HHHHcCCCCCCeEEEEeCc
Q 043468 152 KANKMKMMEKDYIWITTDA 170 (720)
Q Consensus 152 ~a~~~g~~~~~~~~i~~~~ 170 (720)
++.+.|. +.+|+.++.
T Consensus 89 ~~~~~gi---~~i~~~~g~ 104 (140)
T 1iuk_A 89 EVLALRP---GLVWLQSGI 104 (140)
T ss_dssp HHHHHCC---SCEEECTTC
T ss_pred HHHHcCC---CEEEEcCCc
Confidence 9999887 457876544
No 354
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=36.67 E-value=81 Score=25.50 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHc
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKM 156 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~ 156 (720)
...+++.+++.|.++... . +....+..+....+|+|+ ....+...++++.++.
T Consensus 31 ~~~l~~~L~~~g~~v~~~---~-----~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 31 GGEIEKGLNVKGFMADVT---E-----SLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----CHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcEEEEe---C-----CHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 678888898889876421 1 555666667777899988 5455566777777765
No 355
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=36.65 E-value=1.4e+02 Score=30.07 Aligned_cols=91 Identities=13% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC------HHHHH
Q 043468 74 WEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS------LELAV 147 (720)
Q Consensus 74 ~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~------~~~~~ 147 (720)
..-+++.++|.+..+....+++.+.+.+++.|.++.... + ... +......++. ++|.|++.++ .....
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~-~--~~~-~~~~~~~~l~--~~d~iiigsP~y~~~~~~~~k 327 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYC-L--HED-DRSEIVKDIL--ESGAIALGAPTIYDEPYPSVG 327 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEE-T--TTS-CHHHHHHHHH--TCSEEEEECCEETTEECTHHH
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEE-C--CCC-CHHHHHHHHH--HCCEEEEECccccccchHHHH
Confidence 345788899887655445557778888887887654332 2 222 5555556665 4777777542 34677
Q ss_pred HHHHHHHHcCC---CCCCeEEEEeCc
Q 043468 148 HLFEKANKMKM---MEKDYIWITTDA 170 (720)
Q Consensus 148 ~~l~~a~~~g~---~~~~~~~i~~~~ 170 (720)
.++........ .++....+++..
T Consensus 328 ~~ld~l~~~~~~~l~~k~~~~~~~~g 353 (404)
T 2ohh_A 328 DLLMYLRGLKFNRTLTRKALVFGSMG 353 (404)
T ss_dssp HHHHHHHHHCGGGTCCEEEEEEEEES
T ss_pred HHHHHhhhccccccCCCEEEEEEecC
Confidence 77777665333 444444444433
No 356
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=36.39 E-value=37 Score=32.34 Aligned_cols=83 Identities=5% Similarity=0.007 Sum_probs=49.2
Q ss_pred hCCCeEEEEEEEcCC---CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHH
Q 043468 73 SWEWHQVTVIYEDID---SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHL 149 (720)
Q Consensus 73 ~~~~~~v~ii~~~~~---~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~ 149 (720)
...-+.|+++..+.. ..-..+.+.+++.+++.|..+.....- ............+.+.++|.||+...... ...
T Consensus 5 ~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~ 81 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHI--HAKDSMVPIRYILETGSADGVIISKIEPN-DPR 81 (288)
T ss_dssp --CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBS--SGGGTTHHHHHHHHHTCCSEEEEESCCTT-CHH
T ss_pred cCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCC--cchhHHHHHHHHHHcCCccEEEEecCCCC-cHH
Confidence 334568899887532 222334788888888899887654221 11113445555566789998887653222 245
Q ss_pred HHHHHHcCC
Q 043468 150 FEKANKMKM 158 (720)
Q Consensus 150 l~~a~~~g~ 158 (720)
++.+.+.|.
T Consensus 82 ~~~l~~~~i 90 (288)
T 3gv0_A 82 VRFMTERNM 90 (288)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhhCCC
Confidence 666777776
No 357
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=35.70 E-value=1.2e+02 Score=24.11 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC-CCeEEEEEcC--H-HHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG-QCRVFVVHLS--L-ELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~-~~~vvil~~~--~-~~~~~~l~~a~~~g 157 (720)
.+.++..+++.|+++... . +....+..+.+. .+|+|++... . .+...++++.++..
T Consensus 18 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~ 77 (132)
T 2rdm_A 18 LLDFESTLTDAGFLVTAV---S-----SGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREID 77 (132)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCEEEEE---C-----CHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcC
Confidence 678888888889876531 1 555667777776 8999998763 2 45677888887764
No 358
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=35.62 E-value=21 Score=34.54 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=51.5
Q ss_pred HHHhCCCeEEEEEEEc------CCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCH
Q 043468 70 IVQSWEWHQVTVIYED------IDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSL 143 (720)
Q Consensus 70 ~l~~~~~~~v~ii~~~------~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~ 143 (720)
-++...-++|+++..+ ++..-..+.+.+++.+++.|.++.... ...+.......++.+.+.++|.|++....
T Consensus 16 ~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 93 (305)
T 3huu_A 16 TLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTV--SENSGDLYHEVKTMIQSKSVDGFILLYSL 93 (305)
T ss_dssp -----CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECC--CSSHHHHHHHHHHHHHTTCCSEEEESSCB
T ss_pred HhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEe--CCCChHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 3444455789999876 222223347888999999998875421 11111134567777888899998886533
Q ss_pred HHHHHHHHHHHHcCC
Q 043468 144 ELAVHLFEKANKMKM 158 (720)
Q Consensus 144 ~~~~~~l~~a~~~g~ 158 (720)
.+ ...++.+.+.|.
T Consensus 94 ~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 94 KD-DPIEHLLNEFKV 107 (305)
T ss_dssp TT-CHHHHHHHHTTC
T ss_pred CC-cHHHHHHHHcCC
Confidence 22 255667777776
No 359
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=35.42 E-value=1e+02 Score=29.38 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=30.7
Q ss_pred EeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeee
Q 043468 379 FSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGD 424 (720)
Q Consensus 379 ~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~ 424 (720)
+...+...+-+.+|+++++.. ++-.-+.+.|.+|++|+....
T Consensus 30 i~~~i~~~~Le~~G~~Ve~~~----~~~~~~~~AL~~G~iD~~~e~ 71 (280)
T 3tmg_A 30 AATNVLKVVFEKMGYNAEIFS----VTTSIMYQYLASGKIDGTVSS 71 (280)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE----CCHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEE----CCcHHHHHHHHCCCCcEEEec
Confidence 345677777777998877643 233678899999999998754
No 360
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=35.31 E-value=33 Score=32.75 Aligned_cols=50 Identities=6% Similarity=0.143 Sum_probs=39.8
Q ss_pred ccchhhhhhh-----hccCCc-ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 043468 503 QTGTFFWLSF-----NLHGEK-LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTA 552 (720)
Q Consensus 503 ~~~~~~~~~~-----~~~g~~-~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~ 552 (720)
.+.+++|++. .+.|+. |.+..+|++++++.++++.+...+.+.+...+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788777 566765 7899999999999999998888888887765543
No 361
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=35.20 E-value=57 Score=30.80 Aligned_cols=71 Identities=7% Similarity=-0.077 Sum_probs=47.3
Q ss_pred EeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeecc---ceeeeeecccccccceEEEEeccc
Q 043468 379 FSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVAR---RCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 379 ~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~---r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
+..+++..+.++. +.++++... +-...+.+|.+|++|+++.....+++ +...+ ...|+..+.++++++..+
T Consensus 17 ~l~~~~~~f~~~~P~v~i~v~~~----~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvvv~~~~ 91 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLGTFINVQGG----GTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPIVNKKV 91 (264)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEE----CHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEECTTS
T ss_pred HHHHHHHHHHHHCCCceEEEEeC----CCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEEEcCCC
Confidence 3456777777766 555444432 24788999999999999865444331 01122 357899999999998765
No 362
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=34.99 E-value=54 Score=30.80 Aligned_cols=80 Identities=5% Similarity=0.138 Sum_probs=49.7
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC-HHHHHHHHHHHH
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS-LELAVHLFEKAN 154 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~-~~~~~~~l~~a~ 154 (720)
++|+++..+.. .+-..+.+.+++.+++.|.++..... ..+...-...++.+.+.++|.|++... .+.....++.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 79 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMAN 79 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC--TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHH
Confidence 57888876532 22233478888999999988765432 122113345677777789999887543 333335567777
Q ss_pred HcCC
Q 043468 155 KMKM 158 (720)
Q Consensus 155 ~~g~ 158 (720)
+.|.
T Consensus 80 ~~~i 83 (271)
T 2dri_A 80 QANI 83 (271)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 7776
No 363
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=34.94 E-value=63 Score=26.95 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
...+++.+++.|..|... . +....+..+++..+|+|++.. .+.+...++++.++...
T Consensus 27 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 85 (153)
T 3hv2_A 27 LQRLQQLLSPLPYTLHFA---R-----DATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYP 85 (153)
T ss_dssp HHHHHHHHTTSSCEEEEE---S-----SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCT
T ss_pred HHHHHHHhcccCcEEEEE---C-----CHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCC
Confidence 678888999888765432 1 556677777778899999975 44566777777777543
No 364
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=34.91 E-value=76 Score=26.38 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC--HHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS--LELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~--~~~~~~~l~~a~~~g 157 (720)
...+.+.+++.|.++... . +....+..+....+|+|++... ..+...+++..++..
T Consensus 20 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 20 LNSLKRLIKRLGCNIITF---T-----SPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSY 77 (154)
T ss_dssp HHHHHHHHHTTTCEEEEE---S-----CHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCeEEEe---C-----CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 678888898889876521 1 5566777787788999999753 345667777777754
No 365
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=34.91 E-value=21 Score=33.28 Aligned_cols=73 Identities=14% Similarity=-0.027 Sum_probs=50.2
Q ss_pred EEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccce---eeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRC---QYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~---~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
|+.-+|...+.++.+.++++.... -..++.++.+|.+|+.+..-...++.. ....-..++....+++++|+.+
T Consensus 19 ~ll~eL~~~Fek~~gv~V~~~~~g----Sg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVLV~P~~~ 94 (242)
T 3kn3_A 19 GLLDVLAPAYKKDTGVDLKWVAVG----TGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVIIGNPSF 94 (242)
T ss_dssp THHHHHHHHHHHHHSCEEEEEEEC----HHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEEEECTHH
T ss_pred hHHHHHHHHHHHHhCCeEEEEEcC----cHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEEEEeCCC
Confidence 666788888888888776665533 367999999999999975443322221 1111235788888999998864
No 366
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=34.86 E-value=20 Score=33.93 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred cccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHh--CCCeEE
Q 043468 2 DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQS--WEWHQV 79 (720)
Q Consensus 2 ~Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~--~~~~~v 79 (720)
+.+.+.++.+|+-+.++..+..+-.+-+..++|+|+... .++...++. .+.++|
T Consensus 56 ~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvigii~------------------------~av~~A~~~~~~~~~ri 111 (255)
T 2jfz_A 56 DFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIE------------------------PSILAIKRQVEDKNAPI 111 (255)
T ss_dssp HHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEECSSH------------------------HHHHHHHHHCCCTTSCE
T ss_pred HHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeH------------------------HHHHHHHHhhcCCCCEE
Q ss_pred EEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCC-------------CcccHHHHHHHhhcCCCeEEEEEcCH
Q 043468 80 TVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHF-------------PSSRLSEELEKLKGGQCRVFVVHLSL 143 (720)
Q Consensus 80 ~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~-------------~~~d~~~~l~~i~~~~~~vvil~~~~ 143 (720)
+|+..... .. ...+++.+++.|...+....-+.- ....+...+++ .+.++|+||+.|..
T Consensus 112 gVlaT~~T---~~-~~~y~~~l~~~g~~~v~~~~~~~lv~~ie~g~~~~~~~~~~l~~~~~~-~~~~~d~iILGCTh 183 (255)
T 2jfz_A 112 LVLGTKAT---IQ-SNAYDNALKQQGYLNISHLATSLFVPLIEESILEGELLETCMHYYFTP-LEILPEVIILGCTH 183 (255)
T ss_dssp EEEECHHH---HH-HTHHHHHHHHTTCCCEEEEECTTHHHHHHTTCCSSHHHHHHHHHHHTT-CCSCCSEEEEESTT
T ss_pred EEEECHHH---Hh-ChHHHHHHHHcCCCEEEecChHHHHHHHHhcccCCHHHHHHHHHHHhh-hcCCCCEEEEcCcC
No 367
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=34.75 E-value=1e+02 Score=24.92 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...++..+++.|..+... . +....+..+....+|+|++.. .+.+...+++..++..
T Consensus 16 ~~~l~~~L~~~g~~v~~~---~-----~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 73 (138)
T 3c3m_A 16 VDVFVTMLERGGYRPITA---F-----SGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDP 73 (138)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCceEEEe---C-----CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCc
Confidence 678888888888876421 1 445566666667899999976 3445677788887753
No 368
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=34.65 E-value=46 Score=31.72 Aligned_cols=81 Identities=10% Similarity=0.052 Sum_probs=43.8
Q ss_pred CCeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEE-EecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHH
Q 043468 75 EWHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHV-LALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEK 152 (720)
Q Consensus 75 ~~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~-~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~ 152 (720)
.-++|+++..+.. ..-..+.+.+++.+++.|.++... .. ..... .....++.+.+.++|.|++...... ...++.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~-~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 83 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSG-SADPE-EQKHALLTAIERPVMGILLLSIALT-DDNLQL 83 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC------------CHHHHHHSSCCSEEEEESCC-----CHHH
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCC-CCCHH-HHHHHHHHHHhcCCCEEEEecccCC-HHHHHH
Confidence 3457888876422 222334788888899999887653 21 11111 3345677777789999888654322 244566
Q ss_pred HHHcCC
Q 043468 153 ANKMKM 158 (720)
Q Consensus 153 a~~~g~ 158 (720)
+.+.+.
T Consensus 84 l~~~~i 89 (290)
T 3clk_A 84 LQSSDV 89 (290)
T ss_dssp HHCC--
T ss_pred HHhCCC
Confidence 666554
No 369
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=34.29 E-value=75 Score=24.99 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...++..+++.|.++... . +....+..+.+..+|+|++.. ...+...++++.++..
T Consensus 14 ~~~l~~~L~~~~~~v~~~---~-----~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 71 (124)
T 1mb3_A 14 MKLFHDLLEAQGYETLQT---R-----EGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDD 71 (124)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----CHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCcEEEEe---C-----CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCc
Confidence 678888888889876421 1 444555666666799999875 3445667788877753
No 370
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=34.24 E-value=30 Score=35.32 Aligned_cols=83 Identities=16% Similarity=0.281 Sum_probs=49.9
Q ss_pred HHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCc-ccHHHHHHHhhcCCCeEEEEEc--CH
Q 043468 67 IAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPS-SRLSEELEKLKGGQCRVFVVHL--SL 143 (720)
Q Consensus 67 ~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~d~~~~l~~i~~~~~~vvil~~--~~ 143 (720)
+.+.++ +| +++.||+++......++.+.+.+.++ |+++.......+... +.....++.+++.++|+||-.+ +.
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 455556 67 89998876543222234677777776 776543222222221 2566677778888999988554 44
Q ss_pred HHHHHHHHHH
Q 043468 144 ELAVHLFEKA 153 (720)
Q Consensus 144 ~~~~~~l~~a 153 (720)
-|+..++...
T Consensus 119 iD~AK~iA~~ 128 (408)
T 1oj7_A 119 LDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666554
No 371
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=34.18 E-value=42 Score=32.44 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=48.3
Q ss_pred EEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc-CHHHHHHHHHHHHH
Q 043468 78 QVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL-SLELAVHLFEKANK 155 (720)
Q Consensus 78 ~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~-~~~~~~~~l~~a~~ 155 (720)
+|+++..+.. ++ ..+.+.+++.+++.|.++..... ...+.......++.+.+.++|.|++.. ........++.+.+
T Consensus 3 ~Ig~i~~~~~~~~-~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYW-SQVEQGVKAAGKALGVDTKFFVP-QKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHH-HHHHHHHHHHHHHHTCEEEEECC-SSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHH-HHHHHHHHHHHHHcCCEEEEECC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 5777765432 22 23477888888999988754321 111111344567777778999988754 33434456777777
Q ss_pred cCC
Q 043468 156 MKM 158 (720)
Q Consensus 156 ~g~ 158 (720)
.|.
T Consensus 81 ~~i 83 (313)
T 2h3h_A 81 MGI 83 (313)
T ss_dssp TTC
T ss_pred CCC
Confidence 776
No 372
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=34.07 E-value=70 Score=30.72 Aligned_cols=69 Identities=7% Similarity=0.042 Sum_probs=46.6
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+..+++..+.++. +.++++ .. ++...++.+|.+|++|+++........ .+. +.++....+++++++..
T Consensus 103 ~~l~~~l~~f~~~~P~v~i~l--~~--~~~~~~~~~l~~g~~Dlai~~~~~~~~---~l~-~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHPNLRIEL--YE--MGTKAQTEALKEGRIDAGFGRLKISDP---AIK-HSLLRNERLMVAVHASH 172 (312)
T ss_dssp TTHHHHHHHHHHTCTTCEEEE--EE--CCHHHHHHHHHTTSCSEEEESSCCCCT---TEE-EEEEEEEEEEEEEETTS
T ss_pred hhHHHHHHHHHHHCCCcEEEE--Ee--CCHHHHHHHHHcCCCCEEEEeCCCCCC---Cce-EEEeecceEEEEEcCCC
Confidence 45667888888776 445444 33 246889999999999999864332222 222 35788888888888764
No 373
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=33.91 E-value=40 Score=33.33 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=47.7
Q ss_pred CeEEEEEEEcCC--CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHH
Q 043468 76 WHQVTVIYEDID--SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKA 153 (720)
Q Consensus 76 ~~~v~ii~~~~~--~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a 153 (720)
-++|+++..+.. +. ..+.+.+++.+++.|.++..... ..+.......++.+.+.++|.||+.....+ ...++.+
T Consensus 66 s~~Igvi~~~~~~~~~-~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l 141 (348)
T 3bil_A 66 SNTIGVIVPSLINHYF-AAMVTEIQSTASKAGLATIITNS--NEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDL 141 (348)
T ss_dssp --CEEEEESCSSSHHH-HHHHHHHHHHHHHTTCCEEEEEC--TTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHH
T ss_pred CCEEEEEeCCCCCcHH-HHHHHHHHHHHHHcCCEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHH
Confidence 356899886532 22 23478888899999988765432 122113455677777789998887654322 2456666
Q ss_pred HHcCC
Q 043468 154 NKMKM 158 (720)
Q Consensus 154 ~~~g~ 158 (720)
.+.|.
T Consensus 142 ~~~~i 146 (348)
T 3bil_A 142 QKQGM 146 (348)
T ss_dssp HHC-C
T ss_pred HhCCC
Confidence 66665
No 374
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=33.83 E-value=85 Score=25.37 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC---HHHHHHHHHHHHHc
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS---LELAVHLFEKANKM 156 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~---~~~~~~~l~~a~~~ 156 (720)
.+.+++.+++.|+++.... . +....+..+.+..+|+|++... ..+...+++..++.
T Consensus 22 ~~~l~~~L~~~g~~v~~~~--~-----~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 22 AATLRIQLESLGYDVLGVF--D-----NGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG 80 (140)
T ss_dssp HHHHHHHHHHHTCEEEEEE--S-----SHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeeEEEE--C-----CHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC
Confidence 6788888988898765321 1 4555666666667999999753 34566777777765
No 375
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=33.69 E-value=56 Score=32.27 Aligned_cols=66 Identities=8% Similarity=0.140 Sum_probs=40.5
Q ss_pred CCeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc
Q 043468 75 EWHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL 141 (720)
Q Consensus 75 ~~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~ 141 (720)
.-+.|+++..+-. .....+.+.+++.+++.|..+..... ...........++.+.+.++|.|++..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-ERSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-CSSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-CCCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 3457888886532 11123478888899999998765432 111111334567778788999888763
No 376
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=33.45 E-value=34 Score=32.32 Aligned_cols=79 Identities=10% Similarity=0.094 Sum_probs=49.2
Q ss_pred CCeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHH-H
Q 043468 75 EWHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFE-K 152 (720)
Q Consensus 75 ~~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~-~ 152 (720)
+-++|+++..+.. ..-..+.+.+++.+++.|.++..... ..+.......++.+.+.++|.|++.... ...++ .
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~~ 81 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS--DNDIKKAQGYLATFVSHNCTGMISTAFN---ENIIENT 81 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHHH
Confidence 3457888887533 22233478899999999998765332 1222145567777888899999887632 23466 6
Q ss_pred HHHcCC
Q 043468 153 ANKMKM 158 (720)
Q Consensus 153 a~~~g~ 158 (720)
+.+.|+
T Consensus 82 l~~~~i 87 (277)
T 3e61_A 82 LTDHHI 87 (277)
T ss_dssp HHHC-C
T ss_pred HHcCCC
Confidence 777776
No 377
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=33.33 E-value=55 Score=30.97 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=49.2
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC-HHHHHHHHHHHH
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS-LELAVHLFEKAN 154 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~-~~~~~~~l~~a~ 154 (720)
++|+++..+.. ..-..+.+.+++.+++.|.++..... ..+...-...++.+.+.++|.|++... .+.....++.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 79 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS--QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEAN 79 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHH
Confidence 46788876432 11123478888889999998765422 222113345677777789998887543 333345667777
Q ss_pred HcCC
Q 043468 155 KMKM 158 (720)
Q Consensus 155 ~~g~ 158 (720)
+.|.
T Consensus 80 ~~~i 83 (283)
T 2ioy_A 80 SKNI 83 (283)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 7776
No 378
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=32.32 E-value=56 Score=31.09 Aligned_cols=80 Identities=15% Similarity=0.002 Sum_probs=49.0
Q ss_pred CeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHH
Q 043468 76 WHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKAN 154 (720)
Q Consensus 76 ~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~ 154 (720)
-++|+++..+.. ..-..+.+.+++.+++.|.++.... ...+.......++.+.+.++|.|++...... ...++.+.
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~ 92 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN--SDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEFK 92 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE--CTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe--CCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHH
Confidence 357889886532 1113347888899999999876542 1222113456677777789998888653211 23455666
Q ss_pred HcCC
Q 043468 155 KMKM 158 (720)
Q Consensus 155 ~~g~ 158 (720)
+.+.
T Consensus 93 ~~~i 96 (289)
T 2fep_A 93 RSPV 96 (289)
T ss_dssp HSSS
T ss_pred hcCC
Confidence 6665
No 379
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=32.29 E-value=98 Score=23.92 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...+++.+++.|.++... . +....+..+....+|+|++.. .+.+...++++.++..
T Consensus 14 ~~~l~~~l~~~~~~v~~~---~-----~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~ 71 (116)
T 3a10_A 14 RELLKEELQEEGYEIDTA---E-----NGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKK 71 (116)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCEEEEe---C-----CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccC
Confidence 678888888888875421 1 455566667777899999865 3345567777777654
No 380
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=32.14 E-value=67 Score=26.84 Aligned_cols=83 Identities=11% Similarity=0.205 Sum_probs=47.7
Q ss_pred eEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--C-------HHHHH
Q 043468 77 HQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--S-------LELAV 147 (720)
Q Consensus 77 ~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~-------~~~~~ 147 (720)
+++.|+|.+..+....+++.+.+.+++.|.++.... +......+ +. .+.|.|++.+ + +..+.
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~-~~~~~~~~-------l~-~~~d~ii~g~pty~~~~G~~p~~~~ 72 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLN-AADASAEN-------LA-DGYDAVLFGCSAWGMEDLEMQDDFL 72 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEE-TTTBCCTT-------TT-TTCSEEEEEECEECSSSCEECHHHH
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEe-hhhCCHhH-------hc-ccCCEEEEEecccCCCCCCCcHHHH
Confidence 478999988765555567888888888887654332 22211102 21 1567666644 1 23566
Q ss_pred HHHHHHHHcCCCCCCeEEEEe
Q 043468 148 HLFEKANKMKMMEKDYIWITT 168 (720)
Q Consensus 148 ~~l~~a~~~g~~~~~~~~i~~ 168 (720)
.|+.......+.++.+..+++
T Consensus 73 ~fl~~l~~~~l~~k~~~vfg~ 93 (148)
T 3f6r_A 73 SLFEEFDRIGLAGRKVAAFAS 93 (148)
T ss_dssp HHHTTGGGTCCTTCEEEEEEE
T ss_pred HHHHHhhccCCCCCEEEEEEe
Confidence 777666555565554544444
No 381
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=31.42 E-value=2e+02 Score=31.54 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=55.5
Q ss_pred eEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc----CHHHHHHHHHH
Q 043468 77 HQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL----SLELAVHLFEK 152 (720)
Q Consensus 77 ~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~----~~~~~~~~l~~ 152 (720)
.+|.+..-..+...-+ .+-+...++..|++|+.- .... ..+..++..++.++|+|.+.+ .......+++.
T Consensus 597 ~kVvlatvg~D~HdiG-~~iVa~~l~~~GfeVi~l----G~~v-~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~ 670 (727)
T 1req_A 597 PRILLAKMGQDGHDRG-QKVIATAYADLGFDVDVG----PLFQ-TPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKE 670 (727)
T ss_dssp CEEEEECBTTCCCCHH-HHHHHHHHHHHTCEEEEC----CTTB-CHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCcchhHHH-HHHHHHHHHhCCeEEEeC----CCCC-CHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHHH
Confidence 3555554444443344 777888899999998662 2222 678899999999999999876 34567778888
Q ss_pred HHHcCCC
Q 043468 153 ANKMKMM 159 (720)
Q Consensus 153 a~~~g~~ 159 (720)
+++.|+.
T Consensus 671 L~~~G~~ 677 (727)
T 1req_A 671 LDKLGRP 677 (727)
T ss_dssp HHHTTCT
T ss_pred HHhcCCC
Confidence 9999884
No 382
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=31.26 E-value=38 Score=27.63 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
...+++.+++.|.+|+. ... +-...++.+++..+|+|++.. .+.+...++++.++.+.
T Consensus 21 ~~~l~~~L~~~G~~v~~------~a~-~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~i 80 (123)
T 2lpm_A 21 AMLIEDTLCELGHEVAA------TAS-RMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNV 80 (123)
T ss_dssp SHHHHHHHHHHCCCCCB------CSC-CHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCEEEE------EEC-CHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCC
Confidence 67888899999976532 112 666778888888999999864 45556667777777654
No 383
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=31.08 E-value=2.3e+02 Score=30.22 Aligned_cols=87 Identities=11% Similarity=0.013 Sum_probs=59.2
Q ss_pred CeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC----HHHHHHHHH
Q 043468 76 WHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS----LELAVHLFE 151 (720)
Q Consensus 76 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~----~~~~~~~l~ 151 (720)
..+|.+....++...-+ ..-+...++.+|++|..-- . .. .....+..+++.++|+|.+.+. ......+++
T Consensus 98 ~~kVLlatv~GD~HdiG-~~iva~~L~~~G~eVi~LG---~-~v-P~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~ 171 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIG-KNIVGVVLQCNNYEIVDLG---V-MV-PAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAK 171 (579)
T ss_dssp SCEEEEEEBTTCCCCHH-HHHHHHHHHTTTCEEEECC---S-SB-CHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHH-HHHHHHHHHHCCCEEEECC---C-CC-CHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHH
Confidence 34666666666665555 7888888999999876532 1 12 6677888888889999998773 244556788
Q ss_pred HHHHcCCCCCCeEEEEeCc
Q 043468 152 KANKMKMMEKDYIWITTDA 170 (720)
Q Consensus 152 ~a~~~g~~~~~~~~i~~~~ 170 (720)
++++.|.. -.+++++..
T Consensus 172 ~Lr~~g~~--i~ViVGGa~ 188 (579)
T 3bul_A 172 EMERQGFT--IPLLIGGAT 188 (579)
T ss_dssp HHHHTTCC--SCEEEESTT
T ss_pred HHHHcCCC--CeEEEEccc
Confidence 88888873 235554443
No 384
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=31.07 E-value=1.4e+02 Score=25.38 Aligned_cols=60 Identities=8% Similarity=0.014 Sum_probs=35.2
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHH---HHH-HhhcCCCeEEEE-EcCHH
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSE---ELE-KLKGGQCRVFVV-HLSLE 144 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~---~l~-~i~~~~~~vvil-~~~~~ 144 (720)
|.+|..+ ..+.+.+++.|++.|.+|...-.+..... ||-. .+. .+.+.++|.-|+ ++++.
T Consensus 17 igsDhaG--~~lK~~i~~~L~~~G~eV~D~G~~~~~~~-dYpd~a~~va~~V~~g~~d~GIliCGTGi 81 (155)
T 1o1x_A 17 IASDHAA--FELKEKVKNYLLGKGIEVEDHGTYSEESV-DYPDYAKKVVQSILSNEADFGILLCGTGL 81 (155)
T ss_dssp EEECSTT--HHHHHHHHHHHHHTTCEEEECCCCSSSCC-CHHHHHHHHHHHHHTTSCSEEEEEESSSH
T ss_pred EeeCchH--HHHHHHHHHHHHHCCCEEEEeCCCCCCCC-ChHHHHHHHHHHHHcCCCceEEEEcCCcH
Confidence 3344443 34489999999999999888765543333 4443 333 334445654454 44543
No 385
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=31.03 E-value=88 Score=26.00 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC--HHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS--LELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~--~~~~~~~l~~a~~~g 157 (720)
...+.+.+++.|.++... . +....+..+....+|+|++... +.+...+++..++..
T Consensus 16 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~ 73 (155)
T 1qkk_A 16 RKAMQQTLELAGFTVSSF---A-----SATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALD 73 (155)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----CHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCcEEEEE---C-----CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 678888899999876432 1 5566777777778999999753 345667777777664
No 386
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=30.97 E-value=1e+02 Score=24.70 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC--HHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS--LELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~--~~~~~~~l~~a~~~g~ 158 (720)
...+...+++.|.++.. .. +....+..+....+|+|++... +.+...+++..++...
T Consensus 16 ~~~l~~~L~~~g~~v~~---~~-----~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~ 74 (136)
T 1mvo_A 16 VTLLQYNLERSGYDVIT---AS-----DGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKL 74 (136)
T ss_dssp HHHHHHHHHHTTCEEEE---ES-----SHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcEEEE---ec-----CHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCC
Confidence 67788888888887542 11 4445566666668999998753 3456677888877643
No 387
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=30.97 E-value=58 Score=31.78 Aligned_cols=80 Identities=15% Similarity=-0.001 Sum_probs=48.7
Q ss_pred CCeEEEEEEEcCC--CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHH
Q 043468 75 EWHQVTVIYEDID--SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEK 152 (720)
Q Consensus 75 ~~~~v~ii~~~~~--~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~ 152 (720)
.-++|+++..+.. ++ ..+.+.+++.+++.|..+..... ..+.......++.+.+.++|.|++...... ...++.
T Consensus 62 ~~~~Ig~i~~~~~~~~~-~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 137 (332)
T 2o20_A 62 RTTTVGVILPTITSTYF-AAITRGVDDIASMYKYNMILANS--DNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIRTS 137 (332)
T ss_dssp CCCEEEEEESCTTCHHH-HHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHHHH
T ss_pred CCCEEEEEeCCCCCcHH-HHHHHHHHHHHHHcCCEEEEEEC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 4468999986532 22 23478888899999998765422 122113445677777789998888653111 134555
Q ss_pred HHHcCC
Q 043468 153 ANKMKM 158 (720)
Q Consensus 153 a~~~g~ 158 (720)
+.+.+.
T Consensus 138 l~~~~i 143 (332)
T 2o20_A 138 LKNSRT 143 (332)
T ss_dssp HHHHCC
T ss_pred HHhCCC
Confidence 555565
No 388
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=30.95 E-value=75 Score=31.15 Aligned_cols=79 Identities=8% Similarity=0.047 Sum_probs=50.5
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHH
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANK 155 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~ 155 (720)
+.|+++..+.. ..-..+.+.+++.+++.|..+..... ..+.......++.+.+.++|.|++.....+. ..++.+.+
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~~ 145 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT--DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLDA 145 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHHh
Confidence 47999886533 22233478888888899998754422 2222145567777888899998886533222 55666777
Q ss_pred cCC
Q 043468 156 MKM 158 (720)
Q Consensus 156 ~g~ 158 (720)
.+.
T Consensus 146 ~~i 148 (344)
T 3kjx_A 146 AGI 148 (344)
T ss_dssp CSS
T ss_pred CCC
Confidence 776
No 389
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=30.71 E-value=50 Score=31.77 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=43.1
Q ss_pred eEEEEEEEc---C-CCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCH
Q 043468 77 HQVTVIYED---I-DSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSL 143 (720)
Q Consensus 77 ~~v~ii~~~---~-~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~ 143 (720)
.+|++++.+ + .+. ..+.+.+++.+++.|.++...... ....+....++.+.+.++|.||+.+..
T Consensus 6 ~~Ig~v~~~~~~d~~f~-~~~~~gi~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWN-RKAYEGLLNIHSNLDVDVVLEEGV--NSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp CEEEEECCCC----CCT-HHHHHHHHHHHHHSCCEEEEECCC--CSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred cEEEEEECCCCCCCcHH-HHHHHHHHHHHHHhCCeEEEEeCC--CCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 578998863 2 233 334788888999999887654321 121256678888888899999886643
No 390
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=30.65 E-value=55 Score=30.90 Aligned_cols=69 Identities=7% Similarity=0.162 Sum_probs=43.6
Q ss_pred HHhCCCeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcE-EEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc
Q 043468 71 VQSWEWHQVTVIYEDID-SSATGILPHLSDALREAGAE-IIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL 141 (720)
Q Consensus 71 l~~~~~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~-v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~ 141 (720)
++...-++|+++..+.. ..-..+.+.+++.+++.|.+ +.... .. .+.......++.+.+.++|.|++..
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~-~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFS-TN-SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-SS-CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEe-CC-CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 44445578999987633 22233478899999999998 54431 11 1211445567778888999988876
No 391
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=30.42 E-value=1.9e+02 Score=28.96 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=48.8
Q ss_pred HHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc------
Q 043468 68 AAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL------ 141 (720)
Q Consensus 68 ~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~------ 141 (720)
.++.......++.++|.+..+....+++.+.+.+.+.|.++..... . .. +......++.+ +|.|++.+
T Consensus 243 ~~~~~~~~~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~-~--~~-~~~~~~~~~~~--~d~ii~g~p~y~~~ 316 (398)
T 1ycg_A 243 ARWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKL-S--VS-DRNDVIKEILD--ARAVLVGSPTINND 316 (398)
T ss_dssp HHHHHTCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEG-G--GS-CHHHHHHHHHH--CSEEEEECCCBTTB
T ss_pred HHHhccCCcCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEEC-C--CC-CHHHHHHHHHH--CCEEEEECCccCcc
Confidence 3333433346777777665544444566666777777765433221 1 11 44455555543 55555543
Q ss_pred CHHHHHHHHHHHHHcCCCCCCeEEEEe
Q 043468 142 SLELAVHLFEKANKMKMMEKDYIWITT 168 (720)
Q Consensus 142 ~~~~~~~~l~~a~~~g~~~~~~~~i~~ 168 (720)
.......++..+....+.++....+++
T Consensus 317 ~~~~~~~~l~~l~~~~~~~k~~~~~~s 343 (398)
T 1ycg_A 317 ILPVVSPLLDDLVGLRPKNKVGLAFGA 343 (398)
T ss_dssp CCGGGHHHHHHHHHHCCSSCEEEEEEE
T ss_pred chHHHHHHHHHHhccccCCCEEEEEEe
Confidence 123466677666554554443444443
No 392
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=30.23 E-value=85 Score=28.19 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=46.7
Q ss_pred EEeHHHHHHHHHhCCCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+..+++..+.++.. .+++.... ++...+++.|.+|++|+++..... .....+. +.++....+++++++..
T Consensus 27 ~~l~~~l~~f~~~~P-~v~l~l~~--~~~~~~~~~l~~g~~Dl~i~~~~~--~~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 27 YSLPEVIKAFRELFP-EVRLELIQ--GTPQEIATLLQNGEADIGIASERL--SNDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp HTHHHHHHHHHHHCT-TEEEEEEE--CCHHHHHHHHHHTSCSEEEESSSS--TTCTTEE-EEEEEEECEEEEEETTC
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEe--CCHHHHHHHHHcCCccEEEEeccc--CCCCCce-EEEeeecceEEEecCCC
Confidence 456778888888773 23344433 346889999999999999853221 1112232 35788888888888764
No 393
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=30.15 E-value=82 Score=24.89 Aligned_cols=56 Identities=5% Similarity=0.087 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
.+.++..+++.|.++... . +....+..+....+|+|++.. .+.+...+++..++..
T Consensus 15 ~~~l~~~l~~~g~~v~~~---~-----~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 72 (127)
T 2jba_A 15 REMVCFVLEQNGFQPVEA---E-----DYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRES 72 (127)
T ss_dssp HHHHHHHHHHTTCEEEEE---C-----SHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTST
T ss_pred HHHHHHHHHHCCceEEEe---C-----CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCc
Confidence 678888888888875421 1 455666677777899999875 3445677888887754
No 394
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=30.11 E-value=93 Score=29.92 Aligned_cols=69 Identities=10% Similarity=0.057 Sum_probs=46.7
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+...++..+.++. +.++++. . ++...++.+|.+|++|+++....... ..+. +.++....+++++++..
T Consensus 103 ~~l~~~l~~f~~~~P~v~l~l~--~--~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~~~v~~~~h 172 (313)
T 2h98_A 103 GLLPEIIYLFRQQNPEIHIELI--E--CGTKDQINALKQGKIDLGFGRLKITD---PAIR-RIMLHKEQLKLAIHKHH 172 (313)
T ss_dssp TTHHHHHHHHHHHCTTSEEEEE--E--CCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEEETTS
T ss_pred hHHHHHHHHHHHHCCCeEEEEE--e--CChHHHHHHHHcCCCCEEEEeCCCCC---CCee-EEEeeeCcEEEEEcCCC
Confidence 45667888888876 4554443 3 24588999999999999986433222 2222 35788888888888753
No 395
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=29.90 E-value=48 Score=31.87 Aligned_cols=80 Identities=4% Similarity=-0.048 Sum_probs=48.8
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCH-HHHHHHHHHHH
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSL-ELAVHLFEKAN 154 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~-~~~~~~l~~a~ 154 (720)
.+|+++..+.. .....+.+.+++.+++.|.++..... ..+.......++.+.+.++|.|++.... ......++.+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK 80 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC--TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHH
Confidence 47888876533 21123367788889999998765432 1221134456777777789998876533 22234566677
Q ss_pred HcCC
Q 043468 155 KMKM 158 (720)
Q Consensus 155 ~~g~ 158 (720)
+.|.
T Consensus 81 ~~~i 84 (306)
T 2vk2_A 81 DAEI 84 (306)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 7766
No 396
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=29.61 E-value=2e+02 Score=24.30 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=35.3
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHH---HHHH-hhcCCCeEEEE-EcCHH
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSE---ELEK-LKGGQCRVFVV-HLSLE 144 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~---~l~~-i~~~~~~vvil-~~~~~ 144 (720)
|..|+. | ..+.+.+++.|++.|.+|...-.+..... ||-. .+.+ +.+.++|.-|+ ++++.
T Consensus 6 igsDha-G-~~lK~~i~~~L~~~G~eV~D~G~~~~~~~-dYpd~a~~va~~V~~g~~d~GIliCGTGi 70 (149)
T 2vvr_A 6 FGCDHV-G-FILKHEIVAHLVERGVEVIDKGTWSSERT-DYPHYASQVALAVAGGEVDGGILICGTGV 70 (149)
T ss_dssp EEECTT-G-GGGHHHHHHHHHHTTCEEEECCCCSSSCC-CHHHHHHHHHHHHHTTSSSEEEEEESSSH
T ss_pred EEeCch-h-HHHHHHHHHHHHHCCCEEEEeCCCCCCCC-ChHHHHHHHHHHHHcCCCceEEEEeCCcH
Confidence 444444 3 33489999999999999887755443333 4443 3333 34445655455 44443
No 397
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=29.50 E-value=96 Score=24.78 Aligned_cols=55 Identities=9% Similarity=-0.058 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...++..++ .|.++... . +....+..+.+..+|+|++.. .+.+...++++.++..
T Consensus 17 ~~~l~~~l~-~~~~v~~~---~-----~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 73 (133)
T 3nhm_A 17 RETLRLLLS-GEFDCTTA---A-----DGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEP 73 (133)
T ss_dssp HHHHHHHHT-TTSEEEEE---S-----SHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHh-CCcEEEEE---C-----CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 567777776 77765422 1 566677777778899999965 4566778888888764
No 398
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=29.50 E-value=22 Score=33.86 Aligned_cols=113 Identities=14% Similarity=0.056 Sum_probs=63.5
Q ss_pred CcEEecc-cCCcccccCCCCeEEEeecChHHHHHHHHHHHH-----hCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCc
Q 043468 33 IPVLSFA-DATPNWATERWPFLLQASQNQLAQMKAIAAIVQ-----SWEWHQVTVIYEDIDSSATGILPHLSDALREAGA 106 (720)
Q Consensus 33 ip~is~~-~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~-----~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~ 106 (720)
++++..| +|...+.+.+..- ..+++...++.+++.+. ....++|.++..+.. ...+.+.|++.|.
T Consensus 95 ~~i~aVG~~Ta~aL~~~G~~~---~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~------r~~L~~~L~~~G~ 165 (269)
T 3re1_A 95 QPWFSVGSATGQILLDYGLDA---SWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEG------RELLAEQLRERGV 165 (269)
T ss_dssp SCEEESSHHHHHHHHHTTCCE---ECC-------CGGGCHHHHHHHCSSSCEEEEEECSSC------CCHHHHHHHHTTC
T ss_pred CEEEEECHHHHHHHHHcCCCc---ccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCcc------HHHHHHHHHHCCC
Confidence 5666666 3344454333222 22444445777777754 355678877654322 4578889999999
Q ss_pred EEEEEEecCCCCcc-cHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHH
Q 043468 107 EIIHVLALPHFPSS-RLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANK 155 (720)
Q Consensus 107 ~v~~~~~~~~~~~~-d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~ 155 (720)
+|.....|...... +.......+...+.|+ ++..++..+..|++.+.+
T Consensus 166 ~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~-v~ftS~s~v~~~~~~~~~ 214 (269)
T 3re1_A 166 GVDYLPLYRRYLPQHAPGTLLQRVEVERLNG-LVVSSGQGFEHLLQLAGD 214 (269)
T ss_dssp EEEEEECEEEECCCCCTTTTHHHHHHTTCCE-EECSSHHHHTTTHHHHGG
T ss_pred EEEEEeEEEEECCCCCHHHHHHHHHcCCCCE-EEEcCHHHHHHHHHHhhH
Confidence 98887776432221 2222334455567887 456788888888877654
No 399
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=29.50 E-value=1.3e+02 Score=23.36 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...+++.+++.|.++... . +....+..+....+|++++.. .+.+...++++.++..
T Consensus 13 ~~~l~~~l~~~g~~v~~~---~-----~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~ 70 (121)
T 2pl1_A 13 RHHLKVQIQDAGHQVDDA---E-----DAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSND 70 (121)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCCEEEEe---C-----CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 677888888888875421 1 455566667777899999865 3345667777777654
No 400
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=29.38 E-value=2.4e+02 Score=27.56 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=51.9
Q ss_pred HHHHHHhCCCeEEEEEEEcCCCccc--CcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHH
Q 043468 67 IAAIVQSWEWHQVTVIYEDIDSSAT--GILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLE 144 (720)
Q Consensus 67 ~~~~l~~~~~~~v~ii~~~~~~g~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~ 144 (720)
++..+..+--+++.+|+.-..+... ...+.+.+.+++.|+++..... .... +......++...++|.|+..+.-.
T Consensus 15 ~~~~~~~m~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t--~~~~-~a~~~~~~~~~~~~d~vvv~GGDG 91 (337)
T 2qv7_A 15 LVPRGSHMMRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYAT--EKIG-DATLEAERAMHENYDVLIAAGGDG 91 (337)
T ss_dssp ----CCCSCCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEEC--CSTT-HHHHHHHHHTTTTCSEEEEEECHH
T ss_pred ccccccccccceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEe--cCcc-hHHHHHHHHhhcCCCEEEEEcCch
Confidence 3333333334788888765443211 2256788889999987655432 2222 555566666667889888877777
Q ss_pred HHHHHHHHHHH
Q 043468 145 LAVHLFEKANK 155 (720)
Q Consensus 145 ~~~~~l~~a~~ 155 (720)
....+++.+.+
T Consensus 92 Tv~~v~~~l~~ 102 (337)
T 2qv7_A 92 TLNEVVNGIAE 102 (337)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 77777777744
No 401
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=29.31 E-value=71 Score=27.87 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=34.5
Q ss_pred eEEEEEEEcCC--Ccc---cCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc
Q 043468 77 HQVTVIYEDID--SSA---TGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL 141 (720)
Q Consensus 77 ~~v~ii~~~~~--~g~---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~ 141 (720)
-+++||...|. .|. .. ...+.+.+++.|+++.....++.... .+...+++..+ ++|+|+..+
T Consensus 4 ~~v~IistGdEll~G~i~DtN-~~~l~~~L~~~G~~v~~~~iv~Dd~~-~I~~~l~~a~~-~~DlVittG 70 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTN-AAFIGNFLTYHGYQVRRGFVVMDDLD-EIGWAFRVALE-VSDLVVSSG 70 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHH-HHHHHHHHHHTTCEEEEEEEECSCHH-HHHHHHHHHHH-HCSEEEEES
T ss_pred CEEEEEEEcccccCCcEEeHH-HHHHHHHHHHCCCEEEEEEEeCCCHH-HHHHHHHHHHh-cCCEEEEcC
Confidence 35677766543 121 12 45677777778887776666654322 44444544432 367766643
No 402
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=29.28 E-value=56 Score=31.90 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=50.2
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCC--CeEEEEEcC-HHHHHHHHHH
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQ--CRVFVVHLS-LELAVHLFEK 152 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~--~~vvil~~~-~~~~~~~l~~ 152 (720)
++|+++..+.. .....+.+.+++.+++.|+++..... ..+.......++.+.+.+ +|.||+... .......++.
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~--~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~~ 83 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT--EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEA 83 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC--TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC--CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHHH
Confidence 57888876432 11123478888899999988765422 122113445667776678 999888654 4444467777
Q ss_pred HHHcCC
Q 043468 153 ANKMKM 158 (720)
Q Consensus 153 a~~~g~ 158 (720)
+.+.+.
T Consensus 84 ~~~~~i 89 (332)
T 2rjo_A 84 CSKAGA 89 (332)
T ss_dssp HHHHTC
T ss_pred HHHCCC
Confidence 777665
No 403
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=29.17 E-value=93 Score=29.30 Aligned_cols=69 Identities=9% Similarity=-0.030 Sum_probs=46.2
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+..+++..+.++. +.+ +.... ++...++.+|.+|++|+++......+ ..+. +.++....+++++++..
T Consensus 104 ~~l~~~l~~f~~~~P~i~--l~~~~--~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 104 RSLPLLLRAFLTSTPTAT--VSLTH--MTKDEQVEGLLAGTIHVGFSRFFPRH---PGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp THHHHHHHHHHHHCTTEE--EEEEE--CCHHHHHHHHHHTSCSEEEESCCCCC---TTEE-EEEEEEEEEEEEEEGGG
T ss_pred HHHHHHHHHHHHHCCCcE--EEEEe--CCHHHHHHHHHCCCccEEEEecCCCC---CCce-EEEEeeccEEEEEeCCC
Confidence 44567888888776 444 44333 23578899999999999986433221 2232 35788888899888764
No 404
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=29.14 E-value=2e+02 Score=28.97 Aligned_cols=111 Identities=10% Similarity=0.076 Sum_probs=67.7
Q ss_pred CeEEEeecChHHHHHHHHHH-HHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHc------CcEEEEEEecCCCCc----
Q 043468 51 PFLLQASQNQLAQMKAIAAI-VQSWEWHQVTVIYEDIDSSATGILPHLSDALREA------GAEIIHVLALPHFPS---- 119 (720)
Q Consensus 51 ~~~fr~~p~~~~~~~~~~~~-l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~------g~~v~~~~~~~~~~~---- 119 (720)
||-+.+.+.. ....+.+. ++..+.+++.|+++..... . +.+.+.+.+++. |+++.. ..++.+..
T Consensus 12 ~~~i~~G~g~--~~~~l~~~~~~~~~~~k~liVtd~~v~~-~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~ 86 (393)
T 1sg6_A 12 RESIIADFGL--WRNYVAKDLISDCSSTTYVLVTDTNIGS-I-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSR 86 (393)
T ss_dssp EEEEEEETTH--HHHTHHHHHHHHSCCSEEEEEEEHHHHH-H-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSH
T ss_pred CceEEEeCCc--cHHHHHHHHHHhcCCCeEEEEECCcHHH-H-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCH
Confidence 4555555553 11223333 4667778999998765431 2 367888888877 877643 33443322
Q ss_pred ccHHHHHHHhhcCC--C---eEEEEEc--CHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 043468 120 SRLSEELEKLKGGQ--C---RVFVVHL--SLELAVHLFEKANKMKMMEKDYIWITTD 169 (720)
Q Consensus 120 ~d~~~~l~~i~~~~--~---~vvil~~--~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 169 (720)
+......+.+++.+ + |+||..+ ...|+..++......|+ .++-|-|.
T Consensus 87 ~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 140 (393)
T 1sg6_A 87 QTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRGV---RYVQVPTT 140 (393)
T ss_dssp HHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCC---CEEEECCc
Confidence 15677777777777 7 8887554 45677777776666665 45555554
No 405
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=28.98 E-value=98 Score=29.19 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=47.9
Q ss_pred CCeEEEEEEEcCC--CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHH
Q 043468 75 EWHQVTVIYEDID--SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEK 152 (720)
Q Consensus 75 ~~~~v~ii~~~~~--~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~ 152 (720)
.-++|+++..+.. ++ ..+.+.+++.+++.|.++..... ..+.......++.+.+.++|.|++.....+ ...++.
T Consensus 7 ~~~~Igvi~~~~~~~~~-~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 82 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFC-AAVVKGIEKTAEKNGYRILLCNT--ESDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQN 82 (285)
T ss_dssp CCCEEEEEESCTTSHHH-HHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHH
T ss_pred CCCEEEEEeCCCCCchH-HHHHHHHHHHHHHcCCEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 4467899886432 32 33478888999999998765431 122113445677777789999888654221 134455
Q ss_pred HHHcCC
Q 043468 153 ANKMKM 158 (720)
Q Consensus 153 a~~~g~ 158 (720)
+. .+.
T Consensus 83 l~-~~i 87 (285)
T 3c3k_A 83 II-GAF 87 (285)
T ss_dssp HH-TTS
T ss_pred Hh-cCC
Confidence 55 554
No 406
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=28.89 E-value=1.7e+02 Score=26.91 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=46.1
Q ss_pred CCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHH
Q 043468 74 WEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFE 151 (720)
Q Consensus 74 ~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~ 151 (720)
+...+|.|+ +|+.. ....++..+++.|..|... . +....+..+....+|+|++.. ...+...+++
T Consensus 35 m~~~~ILiv-dd~~~----~~~~l~~~L~~~g~~v~~~---~-----~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~ 101 (249)
T 3q9s_A 35 MNEQRILVI-EDDHD----IANVLRMDLTDAGYVVDHA---D-----SAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQ 101 (249)
T ss_dssp --CCEEEEE-CSCHH----HHHHHHHHHHTTTCEEEEE---S-----SHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHH
T ss_pred CCCCEEEEE-ECCHH----HHHHHHHHHHHCCCEEEEe---C-----CHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHH
Confidence 334566555 44432 2678888888888754321 1 555677777778899999975 5677888888
Q ss_pred HHHH
Q 043468 152 KANK 155 (720)
Q Consensus 152 ~a~~ 155 (720)
+.++
T Consensus 102 ~lr~ 105 (249)
T 3q9s_A 102 RLRK 105 (249)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8886
No 407
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=28.78 E-value=77 Score=27.56 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
...++..+++.|..|... . +....+..+....+|+|++.. .+.+...++++.++...
T Consensus 20 ~~~l~~~L~~~g~~v~~~---~-----~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~ 78 (184)
T 3rqi_A 20 AGTLARGLERRGYAVRQA---H-----NKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQP 78 (184)
T ss_dssp HHHHHHHHHHTTCEEEEE---C-----SHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCEEEEe---C-----CHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCC
Confidence 678888899989865321 1 556677888888999999864 45566777777777543
No 408
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=28.30 E-value=1.1e+02 Score=24.63 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCc--EEEEEEecCCCCcccHHHHHHHhhc-------CCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGA--EIIHVLALPHFPSSRLSEELEKLKG-------GQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~--~v~~~~~~~~~~~~d~~~~l~~i~~-------~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
.+.+++.+++.|. .+... . +....+..+.. ..+|+|++.. .+.+...++++.++..
T Consensus 15 ~~~l~~~L~~~~~~~~v~~~---~-----~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 15 IRLIQEALANSTVPHEVVTV---R-----DGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp HHHHHHHHHTCSSCCEEEEE---C-----SHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHhcCCCceEEEE---C-----CHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 7888999999887 44322 1 55667777776 6899999875 3446677888888754
No 409
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=28.14 E-value=87 Score=29.85 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=45.0
Q ss_pred HHHhCCCeEEEEEEEcCC--CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC
Q 043468 70 IVQSWEWHQVTVIYEDID--SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS 142 (720)
Q Consensus 70 ~l~~~~~~~v~ii~~~~~--~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~ 142 (720)
-++...-+.|+++..+.. +....+.+.+++.+++.|..+..... ..+.......++.+.+.++|.||+...
T Consensus 7 ~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 7 LIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT--GGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp -----CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 344445578999987643 33214589999999999998765432 222214556777788889998887653
No 410
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=28.05 E-value=1.2e+02 Score=24.99 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=38.2
Q ss_pred HHHHHHHHHHc-CcEEEEEEecCCCCcccHHHHHHHhhc-CCCeEEEEEcC--HHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREA-GAEIIHVLALPHFPSSRLSEELEKLKG-GQCRVFVVHLS--LELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~-~~~~vvil~~~--~~~~~~~l~~a~~~g 157 (720)
.+.++..+++. |...+... . +....+..+++ ..+|+|++... ..+...++++.++..
T Consensus 16 ~~~l~~~L~~~~g~~~v~~~--~-----~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 76 (154)
T 2qsj_A 16 RAGAKNLLEGAFSGMRVEGA--E-----TVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFD 76 (154)
T ss_dssp HHHHHHHHHHHCTTEEEEEE--S-----SHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCceEEEEe--c-----CHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhC
Confidence 67888888887 77433321 1 66677777777 78999998763 445667788887764
No 411
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=27.89 E-value=96 Score=25.23 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=38.8
Q ss_pred HHHHHHHHHHc-CcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREA-GAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
.+.+.+.+++. |++++... . +....+..+....+|+|++.. .+.+...++++.++..
T Consensus 22 ~~~l~~~L~~~~~~~~v~~~--~-----~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 81 (143)
T 2qv0_A 22 QQELSWLINTHSQMEIVGSF--D-----DGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFA 81 (143)
T ss_dssp HHHHHHHHHHHSCCEEEEEE--S-----CHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTST
T ss_pred HHHHHHHHHhCCCceEEEEe--C-----CHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccC
Confidence 67788888876 66654321 1 556677777777899999875 3445677777777653
No 412
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=27.73 E-value=1.1e+02 Score=25.27 Aligned_cols=59 Identities=8% Similarity=0.085 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
.+.+++.+++.|...... ... +....+..+++..+|+|++.. ...+...++++.++...
T Consensus 33 ~~~l~~~L~~~~~~~~v~-~~~-----~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 93 (150)
T 4e7p_A 33 RDAMCQLLTLQPDVESVL-QAK-----NGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKL 93 (150)
T ss_dssp HHHHHHHHHTSTTEEEEE-EES-----SHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCcEEEE-EEC-----CHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCC
Confidence 678888888876321111 111 666778888888999999975 45567778888887653
No 413
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=27.60 E-value=1.3e+02 Score=25.37 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=35.5
Q ss_pred EEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHH---HHH-HhhcCCCeEEE-EEcCHH
Q 043468 82 IYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSE---ELE-KLKGGQCRVFV-VHLSLE 144 (720)
Q Consensus 82 i~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~---~l~-~i~~~~~~vvi-l~~~~~ 144 (720)
|.+|..+ ..+.+.+++.|++.|.+|...-.....+. ||-. .+. .+.+.++|.-| +++++.
T Consensus 5 igsDhaG--~~lK~~i~~~L~~~G~eV~D~G~~~~~~~-dYpd~a~~va~~V~~g~~d~GIliCGTGi 69 (149)
T 3he8_A 5 IGSDHGG--YNLKREIADFLKKRGYEVIDFGTHGNESV-DYPDFGLKVAEAVKSGECDRGIVICGTGL 69 (149)
T ss_dssp EEECGGG--HHHHHHHHHHHHHTTCEEEECCCCSSSCC-CHHHHHHHHHHHHHTTSSSEEEEEESSSH
T ss_pred EEECchh--HHHHHHHHHHHHHCCCEEEEcCCCCCCCC-CHHHHHHHHHHHHHcCCCCEEEEEcCCcH
Confidence 4444443 33478999999999999887765544333 4433 333 34445666544 455543
No 414
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=27.59 E-value=52 Score=30.88 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=47.9
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHH
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANK 155 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~ 155 (720)
++|+++..+.. .....+.+.+++.+++.|.++..... ..+.......++.+...++|.|++...... ...++.+.+
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~~ 80 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS--DYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLEA 80 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC--TTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcC--CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHHh
Confidence 47888876532 12133478888999999987654321 112113455677788889998887653211 245666666
Q ss_pred cCC
Q 043468 156 MKM 158 (720)
Q Consensus 156 ~g~ 158 (720)
.+.
T Consensus 81 ~~i 83 (275)
T 3d8u_A 81 SNT 83 (275)
T ss_dssp HTC
T ss_pred CCC
Confidence 665
No 415
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=27.30 E-value=1.2e+02 Score=26.05 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=35.3
Q ss_pred EEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcc--cHHHHHH-HhhcCCCeEEEE-EcCHH
Q 043468 78 QVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSS--RLSEELE-KLKGGQCRVFVV-HLSLE 144 (720)
Q Consensus 78 ~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~--d~~~~l~-~i~~~~~~vvil-~~~~~ 144 (720)
||+ |.+|..+ ..+.+.+++.|++.|.+|...-.......+ |+...+. .+.+.++|.-|+ ++++.
T Consensus 23 kIa-IgsDhaG--~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTGi 90 (166)
T 3s5p_A 23 KVA-FASDHGG--RDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTGI 90 (166)
T ss_dssp EEE-EEECGGG--HHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSSH
T ss_pred EEE-EEECchH--HHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcH
Confidence 444 4454443 334889999999999999887665433221 4444444 344556665444 44543
No 416
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=27.18 E-value=1.1e+02 Score=23.86 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC---HHHHHHHHHHHHHc
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS---LELAVHLFEKANKM 156 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~---~~~~~~~l~~a~~~ 156 (720)
.+.+++.+++.|.++... . +....+..+++..+|+|++... ..+...++++.++.
T Consensus 18 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~ 75 (127)
T 2gkg_A 18 SATLRSALEGRGFTVDET---T-----DGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKD 75 (127)
T ss_dssp HHHHHHHHHHHTCEEEEE---C-----CHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCceEEEe---c-----CHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC
Confidence 678888899889876421 1 4455666666668999998764 34677888888876
No 417
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=27.08 E-value=1.1e+02 Score=24.24 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=36.9
Q ss_pred HHHHHHHHHHc-CcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHc
Q 043468 94 LPHLSDALREA-GAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKM 156 (720)
Q Consensus 94 ~~~~~~~~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~ 156 (720)
.+.+++.+++. |.+++... . +....+..+....+|+|++.. .+.+...++++.++.
T Consensus 15 ~~~l~~~l~~~~~~~~~~~~--~-----~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~ 73 (130)
T 1dz3_A 15 VSLLDEYISSQPDMEVIGTA--Y-----NGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAG 73 (130)
T ss_dssp HHHHHHHHHTSTTEEEEEEE--S-----SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEEEe--C-----CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 67788888876 66654321 1 445566666666799999876 344566777777763
No 418
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=27.01 E-value=2e+02 Score=27.67 Aligned_cols=136 Identities=10% Similarity=0.049 Sum_probs=79.2
Q ss_pred eEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeec-------ChHHHHHHHHHHHHhCC------
Q 043468 9 VEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQ-------NQLAQMKAIAAIVQSWE------ 75 (720)
Q Consensus 9 v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p-------~~~~~~~~~~~~l~~~~------ 75 (720)
+.-++||-..+...+++.++.+.++=++....+.. .....++.|+.- +....-+++.++.+.++
T Consensus 24 iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d---~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l~m~~~l~ 100 (302)
T 3o1l_A 24 RLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD---NLSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMDWRIT 100 (302)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE---TTTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec---CCCCeEEEEEEEecCCCCCCHHHHHHHHHHHHHHhCCeeeec
Confidence 66789999999999999999999998886554321 122246666632 22344455555554432
Q ss_pred ----CeEEEEEEEcCCCcccCcHHHHHHHHHHc--CcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc----CHHH
Q 043468 76 ----WHQVTVIYEDIDSSATGILPHLSDALREA--GAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL----SLEL 145 (720)
Q Consensus 76 ----~~~v~ii~~~~~~g~~~~~~~~~~~~~~~--g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~----~~~~ 145 (720)
.+|++|+.+... +. ++.+-+..++- +.+|+....-.+ +.... .++.+..+..+.. ..+.
T Consensus 101 ~~~~~~ri~vl~Sg~g---~n-l~~ll~~~~~g~l~~~I~~Visn~~----~~~~~---A~~~gIp~~~~~~~~~~r~~~ 169 (302)
T 3o1l_A 101 DSAQKKRVVLMASRES---HC-LADLLHRWHSDELDCDIACVISNHQ----DLRSM---VEWHDIPYYHVPVDPKDKEPA 169 (302)
T ss_dssp ETTSCCEEEEEECSCC---HH-HHHHHHHHHTTCSCSEEEEEEESSS----TTHHH---HHTTTCCEEECCCCSSCCHHH
T ss_pred ccCCCcEEEEEEeCCc---hh-HHHHHHHHHCCCCCcEEEEEEECcH----HHHHH---HHHcCCCEEEcCCCcCCHHHH
Confidence 348888876442 23 56666655543 457766655322 32222 3345666655422 1233
Q ss_pred HHHHHHHHHHcCC
Q 043468 146 AVHLFEKANKMKM 158 (720)
Q Consensus 146 ~~~~l~~a~~~g~ 158 (720)
-..+++..++.+.
T Consensus 170 ~~~~~~~l~~~~~ 182 (302)
T 3o1l_A 170 FAEVSRLVGHHQA 182 (302)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC
Confidence 3456666777665
No 419
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=26.67 E-value=99 Score=25.29 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcC-cEEEEEEecCCCCcccHHHHHHHhhc--CCCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAG-AEIIHVLALPHFPSSRLSEELEKLKG--GQCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g-~~v~~~~~~~~~~~~d~~~~l~~i~~--~~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
...+++.+++.| .++... . +....+..+.+ ..+|+|++.. .+.+...+++++++..-
T Consensus 33 ~~~l~~~L~~~g~~~v~~~---~-----~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 94 (146)
T 4dad_A 33 LAHLARLVGDAGRYRVTRT---V-----GRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHP 94 (146)
T ss_dssp HHHHHHHHHHHCSCEEEEE---C-----CCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhCCCeEEEEe---C-----CHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCC
Confidence 678889999988 776542 2 22334444443 7899999976 45677888888887653
No 420
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=26.53 E-value=2e+02 Score=24.51 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=28.6
Q ss_pred cHHHHHHHhhcCC--CeEEEEEc------CHHHHHHHHHHHHHcCC
Q 043468 121 RLSEELEKLKGGQ--CRVFVVHL------SLELAVHLFEKANKMKM 158 (720)
Q Consensus 121 d~~~~l~~i~~~~--~~vvil~~------~~~~~~~~l~~a~~~g~ 158 (720)
.+...+..+++.+ .|+|++.- ...+...++..+.+.|.
T Consensus 61 ~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~~~gv 106 (167)
T 3guv_A 61 QFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGV 106 (167)
T ss_dssp HHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHHHCCC
Confidence 6777888887666 78887743 56777788888888876
No 421
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=26.41 E-value=1.4e+02 Score=25.81 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=36.7
Q ss_pred EEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHH---HHH-HhhcCCCeEEEE-EcCHH
Q 043468 78 QVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSE---ELE-KLKGGQCRVFVV-HLSLE 144 (720)
Q Consensus 78 ~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~---~l~-~i~~~~~~vvil-~~~~~ 144 (720)
||+ |..|..+ ..+.+.+++.|++.|.+|...-....... ||-. .+. .+.+.++|.-|+ ++++.
T Consensus 22 kIa-IgsDhaG--~~lK~~i~~~L~~~G~eV~D~G~~~~~~~-dYpd~a~~va~~V~~g~~d~GIliCGTGi 89 (169)
T 3ph3_A 22 KIG-IGSDHGG--YNLKREIADFLKKRGYEVIDFGTHGNESV-DYPDFGLKVAEAVKSGECDRGIVICGTGL 89 (169)
T ss_dssp EEE-EEECGGG--HHHHHHHHHHHHHTTCEEEECCCCSSSCC-CHHHHHHHHHHHHHTTSSSEEEEEESSSH
T ss_pred EEE-EEeCchH--HHHHHHHHHHHHHCCCEEEEcCCCCCCCC-CHHHHHHHHHHHHHcCCCCEEEEEcCCcH
Confidence 444 4344443 33478999999999999887765544333 4433 333 344456665454 44443
No 422
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=26.40 E-value=69 Score=30.59 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=41.4
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCc---EEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGA---EIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS 142 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~---~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~ 142 (720)
++|+++-+-++ +. ..+.+.+++.+++.|. ++.....-...+.+....+++++.+.++|.|++.+.
T Consensus 3 ~~Igvi~~~~~p~~-~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVLQFVSHPSL-DLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEEECSCCHHH-HHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEEEccCChhH-HHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 57888832222 22 3347889999999998 644332222222224566788888889999888753
No 423
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=26.32 E-value=1.1e+02 Score=28.82 Aligned_cols=70 Identities=10% Similarity=-0.111 Sum_probs=45.3
Q ss_pred eHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeec-c--ceeeeeecccccccceEEEEeccc
Q 043468 380 SIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVA-R--RCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 380 ~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~-~--r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
...++..+.++. +.++++... .-...+.+|.+|++|+++....... + ....+ ...|+..++++++++..+
T Consensus 18 ~~~~~~~F~~~~P~v~i~v~~~----gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvvv~~~~ 91 (265)
T 4exl_A 18 VEVAADEFGTIHVGKTVNVQGG----GSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALIVNKEV 91 (265)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEE----CHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEECTTC
T ss_pred HHHHHHHHHHHCCCceEEEeeC----CcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEEECCCC
Confidence 345666777766 566544432 2478899999999999976433221 0 11112 357899999999998764
No 424
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=26.29 E-value=23 Score=29.95 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=53.0
Q ss_pred CeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcc---cHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHH
Q 043468 76 WHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSS---RLSEELEKLKGGQCRVFVVHLSLELAVHLFEK 152 (720)
Q Consensus 76 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~---d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~ 152 (720)
.++|++|...+..|.- -..+-+.+.+.|.+|.....-..+... ..-+-+.++. ..+|++++......+..++++
T Consensus 13 p~~IavIGas~~~g~~--G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~-~~~Dlvii~vp~~~v~~v~~~ 89 (145)
T 2duw_A 13 TRTIALVGASDKPDRP--SYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVP-EKVDMVDVFRNSEAAWGVAQE 89 (145)
T ss_dssp CCCEEEESCCSCTTSH--HHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCS-SCCSEEECCSCSTHHHHHHHH
T ss_pred CCEEEEECcCCCCCCh--HHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcC-CCCCEEEEEeCHHHHHHHHHH
Confidence 4678999766555433 355666677888774433221100100 0001122332 378999999888999999998
Q ss_pred HHHcCCCCCCeEEEEeC
Q 043468 153 ANKMKMMEKDYIWITTD 169 (720)
Q Consensus 153 a~~~g~~~~~~~~i~~~ 169 (720)
+.+.|. +.+|+.++
T Consensus 90 ~~~~g~---~~i~i~~~ 103 (145)
T 2duw_A 90 AIAIGA---KTLWLQLG 103 (145)
T ss_dssp HHHHTC---CEEECCTT
T ss_pred HHHcCC---CEEEEcCC
Confidence 888776 56777653
No 425
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=26.14 E-value=75 Score=30.93 Aligned_cols=80 Identities=16% Similarity=0.057 Sum_probs=47.1
Q ss_pred CeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHH
Q 043468 76 WHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKAN 154 (720)
Q Consensus 76 ~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~ 154 (720)
-++|+++..+.. ..-..+.+.+++.+++.|.++..... ..+.......++.+...++|.|++.....+. ..++.+.
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~ 136 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS--DQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEELK 136 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC--CSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHHT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC--CCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHH
Confidence 457999886422 22233478888999999998765421 1111134456777777899988876532111 4455565
Q ss_pred HcCC
Q 043468 155 KMKM 158 (720)
Q Consensus 155 ~~g~ 158 (720)
+.+.
T Consensus 137 ~~~i 140 (332)
T 2hsg_A 137 KSPV 140 (332)
T ss_dssp TSSS
T ss_pred hCCC
Confidence 5554
No 426
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=26.07 E-value=1.2e+02 Score=28.11 Aligned_cols=69 Identities=10% Similarity=0.093 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCe--------------EEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHH
Q 043468 63 QMKAIAAIVQSWEWH--------------QVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEK 128 (720)
Q Consensus 63 ~~~~~~~~l~~~~~~--------------~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ 128 (720)
-.+...++|++-||+ ++.+++.++......+++.+++.+++.|++|..... +......+
T Consensus 100 d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGi~v~i~~~-------~~~~~~~~ 172 (258)
T 3lvu_A 100 NLRRAAQFLEQAGFRIEQGQLLGPDGAPLALRFLLRQGDSDMQTVLEIYTRALERLGIAAQIEKV-------DNAQYTAR 172 (258)
T ss_dssp HHHHHHHHHHHTTCEEETTEEECTTSSBCCCEEEEETTCHHHHHHHHHHHHHHHTTTCCCEEEEE-------CHHHHHHH
T ss_pred CHHHHHHHHHHcCCEeCCCcEECCCCcEEEEEEEecCCChhHHHHHHHHHHHHHHcCCeeEEEec-------CHHHHHHH
Confidence 345555667777775 345555543322233367777777777776654432 34445555
Q ss_pred hhcCCCeEEE
Q 043468 129 LKGGQCRVFV 138 (720)
Q Consensus 129 i~~~~~~vvi 138 (720)
+.+.+.|+.+
T Consensus 173 ~~~~~~d~~~ 182 (258)
T 3lvu_A 173 VAELDFDLTP 182 (258)
T ss_dssp HHTTCCSEEE
T ss_pred hccCCccEEE
Confidence 5555555544
No 427
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=25.99 E-value=1.5e+02 Score=25.43 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=40.7
Q ss_pred CeEEEEEEEcCC--CcccC--cHHHHHHHHHHc-----CcEEEEEEecCCCCcccHHHHHHHhhc-CCCeEEEEEc
Q 043468 76 WHQVTVIYEDID--SSATG--ILPHLSDALREA-----GAEIIHVLALPHFPSSRLSEELEKLKG-GQCRVFVVHL 141 (720)
Q Consensus 76 ~~~v~ii~~~~~--~g~~~--~~~~~~~~~~~~-----g~~v~~~~~~~~~~~~d~~~~l~~i~~-~~~~vvil~~ 141 (720)
.-+++||...|. .|... -...+.+.++++ |.++.....++.... .+.+.+++..+ .++|+|+..+
T Consensus 5 ~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~-~i~~~l~~~~~~~~~DlVittG 79 (167)
T 1uuy_A 5 EYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVE-RIKDILQKWSDVDEMDLILTLG 79 (167)
T ss_dssp SEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHH-HHHHHHHHHHHTSCCSEEEEES
T ss_pred CcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHH-HHHHHHHHHHhcCCCCEEEECC
Confidence 357888877554 22111 024566777777 888887776664333 56666666553 4789988765
No 428
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=25.98 E-value=36 Score=32.68 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=49.9
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC-HHHHHHHHHHHH
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS-LELAVHLFEKAN 154 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~-~~~~~~~l~~a~ 154 (720)
++|+++..+.. ..-..+.+.+++.+++.|.++.....-...+.......++.+.+.++|.|++... .+.....++.+.
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~ 85 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSWV 85 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHHT
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHc
Confidence 57888887543 2223347888999999999876654322112224556777777778998887653 332244566665
Q ss_pred HcCC
Q 043468 155 KMKM 158 (720)
Q Consensus 155 ~~g~ 158 (720)
.|.
T Consensus 86 -~~i 88 (304)
T 3o1i_D 86 -GNT 88 (304)
T ss_dssp -TTS
T ss_pred -CCC
Confidence 555
No 429
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.98 E-value=94 Score=25.20 Aligned_cols=56 Identities=9% Similarity=0.149 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...++..++..|.++... . +....+..+....+|+|++.. .+.+...++++.++..
T Consensus 17 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~ 74 (137)
T 3cfy_A 17 AILYKQYVKDEPYDIFHV---E-----TGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQND 74 (137)
T ss_dssp HHHHHHHTTTSSSEEEEE---S-----SHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCceEEEe---C-----CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 677888888888875421 1 445566666667899999865 3445677788887764
No 430
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=25.93 E-value=1.6e+02 Score=24.25 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCc--EEEEEEecCCCCcccHHHHHHHhh---------cCCCeEEEEEc--CHHHHHHHHHHHHHcCCCC
Q 043468 94 LPHLSDALREAGA--EIIHVLALPHFPSSRLSEELEKLK---------GGQCRVFVVHL--SLELAVHLFEKANKMKMME 160 (720)
Q Consensus 94 ~~~~~~~~~~~g~--~v~~~~~~~~~~~~d~~~~l~~i~---------~~~~~vvil~~--~~~~~~~~l~~a~~~g~~~ 160 (720)
...+++.+++.|. .+... . +....+..++ ...+|+|++.. .+.+...++++.++.....
T Consensus 17 ~~~l~~~L~~~g~~~~v~~~---~-----~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~ 88 (152)
T 3heb_A 17 ARLIEKNIRRAGVNNEIIAF---T-----DGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTR 88 (152)
T ss_dssp HHHHHHHHHHTTCCCCEEEE---S-----SHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTT
T ss_pred HHHHHHHHHhCCCcceEEEe---C-----CHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhccccc
Confidence 7888999999987 43322 1 4555666663 56899999864 4566778888888743222
Q ss_pred CCeEEEEeCc
Q 043468 161 KDYIWITTDA 170 (720)
Q Consensus 161 ~~~~~i~~~~ 170 (720)
.-.+.+.++.
T Consensus 89 ~~pii~~t~~ 98 (152)
T 3heb_A 89 RSPVVILTTT 98 (152)
T ss_dssp TSCEEEEESC
T ss_pred CCCEEEEecC
Confidence 2224444443
No 431
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=25.93 E-value=1.1e+02 Score=28.18 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
...++..+++.|.+|... . +....+..+....+|+|++.. .+.+...++++.++.+.
T Consensus 36 ~~~l~~~L~~~g~~v~~~---~-----~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~ 94 (250)
T 3r0j_A 36 VELLSVSLKFQGFEVYTA---T-----NGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGI 94 (250)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCEEEEE---C-----CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 678888888889876421 1 555666677767899999975 45567778888887654
No 432
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=25.75 E-value=83 Score=29.81 Aligned_cols=82 Identities=10% Similarity=0.012 Sum_probs=48.1
Q ss_pred eEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC-HHHHHHHHHHHH
Q 043468 77 HQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS-LELAVHLFEKAN 154 (720)
Q Consensus 77 ~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~-~~~~~~~l~~a~ 154 (720)
++|+++..+.. .+-..+.+.+++.+++.|.++.........+...-...++.+...++|.|++... .......++.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~ 81 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAW 81 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHH
Confidence 46788876432 1112346788888999998776543111122113345567777788999887543 222234566777
Q ss_pred HcCC
Q 043468 155 KMKM 158 (720)
Q Consensus 155 ~~g~ 158 (720)
+.+.
T Consensus 82 ~~~i 85 (288)
T 1gud_A 82 KKGI 85 (288)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 7665
No 433
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=25.68 E-value=56 Score=30.98 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=45.6
Q ss_pred HhCCCeEEEEEEE-cCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHH
Q 043468 72 QSWEWHQVTVIYE-DID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHL 149 (720)
Q Consensus 72 ~~~~~~~v~ii~~-~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~ 149 (720)
+..+-+.|+++.. +.. ..-..+.+.+++.+++.|.++.....-.. .. +....++.+.+.++|.|++.........+
T Consensus 7 ~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~-~~~~~~~~l~~~~vdgiIi~~~~~~~~~~ 84 (289)
T 3g85_A 7 NSQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYK-TD-CLHLEKGISKENSFDAAIIANISNYDLEY 84 (289)
T ss_dssp ----CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEEC-TT-CGGGCGGGSTTTCCSEEEESSCCHHHHHH
T ss_pred ccCCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCC-ch-hHHHHHHHHhccCCCEEEEecCCcccHHH
Confidence 3445578999987 322 22233478888999999987654432211 11 34456777777899999887654443333
Q ss_pred H
Q 043468 150 F 150 (720)
Q Consensus 150 l 150 (720)
.
T Consensus 85 ~ 85 (289)
T 3g85_A 85 L 85 (289)
T ss_dssp H
T ss_pred H
Confidence 3
No 434
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=25.59 E-value=2.3e+02 Score=27.17 Aligned_cols=77 Identities=8% Similarity=0.049 Sum_probs=48.9
Q ss_pred CCeEEEEEEEcCCCccc--CcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHH
Q 043468 75 EWHQVTVIYEDIDSSAT--GILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEK 152 (720)
Q Consensus 75 ~~~~v~ii~~~~~~g~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~ 152 (720)
..+++.+|+.-..+... ...+.+++.+++.|+++..... .... +.....+++. .+.|.|+..+.-.....++..
T Consensus 7 ~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t--~~~~-~a~~~~~~~~-~~~d~vv~~GGDGTl~~v~~~ 82 (304)
T 3s40_A 7 KFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHT--KEQG-DATKYCQEFA-SKVDLIIVFGGDGTVFECTNG 82 (304)
T ss_dssp SCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEEC--CSTT-HHHHHHHHHT-TTCSEEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEc--cCcc-hHHHHHHHhh-cCCCEEEEEccchHHHHHHHH
Confidence 45678888755443222 2256788888899987654432 2222 6666677765 488888877766677777776
Q ss_pred HHH
Q 043468 153 ANK 155 (720)
Q Consensus 153 a~~ 155 (720)
+..
T Consensus 83 l~~ 85 (304)
T 3s40_A 83 LAP 85 (304)
T ss_dssp HTT
T ss_pred Hhh
Confidence 655
No 435
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=25.46 E-value=1.5e+02 Score=23.89 Aligned_cols=56 Identities=18% Similarity=0.155 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
.+.+...+++.|.++.. .. +....+..+....+|+|++.. .+.+...+++..++..
T Consensus 17 ~~~l~~~L~~~g~~v~~---~~-----~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~ 74 (136)
T 2qzj_A 17 CQKLKGFLEEKGISIDL---AY-----NCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVT 74 (136)
T ss_dssp HHHHHHHHHTTTCEEEE---ES-----SHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCEEEE---EC-----CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCC
Confidence 67888888888876532 11 445566667777899999865 3445677788887654
No 436
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=25.23 E-value=1.1e+02 Score=24.13 Aligned_cols=56 Identities=5% Similarity=0.135 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...++..+++.|.++.. .. +....+..+....+|+|++.. .+.+...++++.++..
T Consensus 16 ~~~l~~~l~~~~~~v~~---~~-----~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~ 73 (124)
T 1srr_A 16 RILLNEVFNKEGYQTFQ---AA-----NGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVID 73 (124)
T ss_dssp HHHHHHHHHTTTCEEEE---ES-----SHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCcEEEE---eC-----CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 67888888888887542 11 444555666666899999875 3445667777777654
No 437
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=25.13 E-value=30 Score=34.00 Aligned_cols=67 Identities=18% Similarity=0.112 Sum_probs=44.5
Q ss_pred hCCCeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC
Q 043468 73 SWEWHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS 142 (720)
Q Consensus 73 ~~~~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~ 142 (720)
...-+.|+++..+.. ..-..+.+.+++.+++.|.++.....-. .......++.+.+.++|.|++...
T Consensus 61 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 61 EHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS---VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp ---CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS---HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred cCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC---hHHHHHHHHHHHhCCCCEEEEcch
Confidence 334567999987643 2223347889999999999876654322 225566777787789999888766
No 438
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=25.07 E-value=83 Score=29.83 Aligned_cols=69 Identities=14% Similarity=0.015 Sum_probs=43.4
Q ss_pred HHHHHHHH----hC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468 382 ELFKALVE----KL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK 454 (720)
Q Consensus 382 dl~~~la~----~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 454 (720)
.+++++++ +. +.++++.. .|| .+.+.++.+|.+|++..+-.++.+..+.-.-..|+..+++++++++.+
T Consensus 49 p~~~~~a~~f~~~~p~v~v~~~~---~GS-g~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n 122 (279)
T 4gd5_A 49 PVMEAEAEAFKTKKPDVSIEINQ---IGS-SAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNN 122 (279)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEE---CCH-HHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTC
T ss_pred HHHHHHHHHHHHHCCCceEEEee---CCc-HHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCC
Confidence 34455443 33 45544433 333 678899999999999776555543322222235788889999998775
No 439
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=24.91 E-value=1.3e+02 Score=23.96 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...++..+++.|.++.. .. +....+..+....+|+|++.. .+.+...+++..++..
T Consensus 16 ~~~l~~~L~~~g~~v~~---~~-----~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~ 73 (132)
T 3crn_A 16 LDSTKQILEFEGYEVEI---AA-----TAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLR 73 (132)
T ss_dssp HHHHHHHHHHTTCEEEE---ES-----SHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCceEEE---eC-----CHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhC
Confidence 67888888888887542 11 445566667777899999865 3445667777777654
No 440
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=24.68 E-value=98 Score=28.36 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=58.7
Q ss_pred CCcEEecc-cCCcccccCCCCeEEEeecChHHHHHHHHHHH-HhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEE
Q 043468 32 QIPVLSFA-DATPNWATERWPFLLQASQNQLAQMKAIAAIV-QSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEII 109 (720)
Q Consensus 32 ~ip~is~~-~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l-~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~ 109 (720)
++++...| +|...+.+.+..- -..|.. ..++.+++.+ .....+++.++..+.. ...+.+.|++.|++|.
T Consensus 67 ~~~i~aVG~~Ta~aL~~~G~~~--~~~p~~-~~~e~L~~~l~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~ 137 (229)
T 3p9z_A 67 NIPAYALSEPTAKTLQDHHFKV--AFMGEK-AHGKEFVQEIFPLLEKKSVLYLRAKEI------VSSLDTILLEHGIDFK 137 (229)
T ss_dssp TSCEEESSHHHHHHHHHTTCCB--CCCCC----------CCHHHHTTCEEEEEEESSC------SSCHHHHHHHTTCEEE
T ss_pred CCcEEEECHHHHHHHHHcCCCe--eecCCc-ccHHHHHHHHHhhCCCCEEEEECCccc------hHHHHHHHHHCCCeEE
Confidence 56777666 4444454322221 123442 4456666654 3335567765555432 3456778889999988
Q ss_pred EEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHH
Q 043468 110 HVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKA 153 (720)
Q Consensus 110 ~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a 153 (720)
....|......+-....+.+...+.|+ +++.++..+..+++.+
T Consensus 138 ~~~vY~~~~~~~~~~~~~~l~~~~~d~-v~ftS~s~v~~~~~~~ 180 (229)
T 3p9z_A 138 QAVVYENKLKHLTLSEQNALKPKEKSI-LIFTAISHAKAFLHYF 180 (229)
T ss_dssp EEEEEEEEECCCCHHHHHHHSCCTTCE-EEECSHHHHHHHHHHS
T ss_pred EEEEEEeeCCCccHHHHHHHhcCCCeE-EEEECHHHHHHHHHHh
Confidence 877765432211123355566567776 5567777778877655
No 441
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=24.55 E-value=1.3e+02 Score=24.16 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhc-CCCeEEEEEcC--HHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKG-GQCRVFVVHLS--LELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~-~~~~vvil~~~--~~~~~~~l~~a~~~g 157 (720)
.+.+++.+++.|.++... . +....+..+.+ ..+|+|++... +.+...++++.++..
T Consensus 28 ~~~l~~~L~~~g~~v~~~---~-----~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 28 ATLIQYHLNQLGAEVTVH---P-----SGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQT 86 (138)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHHHcCCEEEEe---C-----CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 678888898888865321 1 55667777777 78999999763 345667787777643
No 442
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=24.42 E-value=99 Score=21.71 Aligned_cols=15 Identities=13% Similarity=-0.035 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 043468 689 SGGISTIALVIFLWR 703 (720)
Q Consensus 689 l~~g~~ls~~v~~~E 703 (720)
+++|.++++++|..-
T Consensus 12 ivlGg~~~lll~~gl 26 (70)
T 2klu_A 12 IVLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 345555555555443
No 443
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=24.41 E-value=75 Score=25.67 Aligned_cols=56 Identities=9% Similarity=-0.010 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
.+.+++.+++.|..+... . +....+..+++..+|+|++.. ...+...++++.++..
T Consensus 20 ~~~l~~~L~~~~~~v~~~---~-----~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (137)
T 3hdg_A 20 REWLSTIISNHFPEVWSA---G-----DGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGG 77 (137)
T ss_dssp HHHHHHHHHTTCSCEEEE---S-----SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCcEEEEE---C-----CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 678888888877654332 1 555666777777899999975 4556778888888765
No 444
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=24.38 E-value=1.1e+02 Score=28.69 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=40.9
Q ss_pred CeEEEEEEEcCC-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC
Q 043468 76 WHQVTVIYEDID-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS 142 (720)
Q Consensus 76 ~~~v~ii~~~~~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~ 142 (720)
-++|+++..+.. .....+.+.+++.+++.|.++.... ...+.......++.+.+.++|.|++...
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgii~~~~ 72 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN--AWNNLEKQRAYLSMMAQKRVDGLLVMCS 72 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE--CTTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc--CCCChHHHHHHHHHHHhCCCCEEEEEec
Confidence 357889886432 1112347888889999999876532 1122113445677777789998887653
No 445
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=24.16 E-value=1.1e+02 Score=25.73 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=37.7
Q ss_pred EEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCC-Ccc--cHHHHHHHhhcCCCeEEEE-EcCHH
Q 043468 78 QVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHF-PSS--RLSEELEKLKGGQCRVFVV-HLSLE 144 (720)
Q Consensus 78 ~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~--d~~~~l~~i~~~~~~vvil-~~~~~ 144 (720)
||+ |.+|..+ ..+.+.+++.|++.|.+|...-.+... ..+ |+...+.+... ++|.-|+ ++++.
T Consensus 9 kI~-igsDhaG--~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~-~~d~GIliCGTGi 75 (148)
T 4em8_A 9 RVF-LSSDHAG--VELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVS-DTSFGVLICGTGI 75 (148)
T ss_dssp EEE-EEECGGG--HHHHHHHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCB-TTBEEEEEESSSH
T ss_pred EEE-EEECchh--HHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHH-HhCeEEEEccCcH
Confidence 443 4455543 334789999999999998877655433 221 55555554444 6665454 44543
No 446
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=23.32 E-value=2e+02 Score=22.69 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC-CCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG-QCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~-~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
.+.+++.+++.|...+... . +....+..+... .+|+|++.. .+.+...++++.++..
T Consensus 18 ~~~l~~~L~~~g~~~v~~~--~-----~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~ 77 (129)
T 3h1g_A 18 RRIIKNTLSRLGYEDVLEA--E-----HGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDS 77 (129)
T ss_dssp HHHHHHHHHHTTCCCEEEE--S-----SHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHcCCcEEEEe--C-----CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 6788888998887522211 1 444556666544 689999864 4556778888887754
No 447
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=23.27 E-value=2.3e+02 Score=24.69 Aligned_cols=75 Identities=12% Similarity=-0.046 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHH--cCcEEEEEEecCCCCcccHHH---HH-HHhhcCCCeEEE
Q 043468 65 KAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALRE--AGAEIIHVLALPHFPSSRLSE---EL-EKLKGGQCRVFV 138 (720)
Q Consensus 65 ~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~--~g~~v~~~~~~~~~~~~d~~~---~l-~~i~~~~~~vvi 138 (720)
..++.-..++.. ||+ |..|..+ ..+.+.+++.|++ .|.+|...-.+..... ||-. .+ +.+.+.++|.-|
T Consensus 12 ~~~~~~~~~M~M-kIa-IgsDhaG--~~lK~~i~~~L~~~~~G~eV~D~G~~s~~s~-DYPd~a~~vA~~V~~g~~d~GI 86 (179)
T 3k7p_A 12 SGLVPRGSHMTR-RVA-IGTDHPA--FAIHENLILYVKEAGDEFVPVYCGPKTAESV-DYPDFASRVAEMVARKEVEFGV 86 (179)
T ss_dssp ---------CCE-EEE-EEECTGG--GGGHHHHHHHHHHTCTTEEEEECSCSSSSCC-CHHHHHHHHHHHHHTTSSSEEE
T ss_pred cCcccccccCce-EEE-EEECchH--HHHHHHHHHHHHhcCCCCeEEEcCCCCCCCC-CHHHHHHHHHHHHHcCCCCEEE
Confidence 344444555553 444 4444443 3448999999999 9999887765544333 4443 33 334455666545
Q ss_pred E-EcCHH
Q 043468 139 V-HLSLE 144 (720)
Q Consensus 139 l-~~~~~ 144 (720)
+ ++++.
T Consensus 87 liCGTGi 93 (179)
T 3k7p_A 87 LAAGSGI 93 (179)
T ss_dssp EEESSSH
T ss_pred EEccCcH
Confidence 4 44543
No 448
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=23.11 E-value=1.7e+02 Score=26.04 Aligned_cols=57 Identities=7% Similarity=0.051 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
.+.++..+++.|.+|... . +....+..+....+|+|++.. .+.+...++++.++...
T Consensus 15 ~~~l~~~L~~~g~~v~~~---~-----~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~ 73 (225)
T 1kgs_A 15 ADLITEALKKEMFTVDVC---Y-----DGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGV 73 (225)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCEEEEE---C-----CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 678888888888876421 1 445566667777899999876 34466778888887653
No 449
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=23.08 E-value=1.3e+02 Score=28.89 Aligned_cols=136 Identities=8% Similarity=0.089 Sum_probs=77.5
Q ss_pred eEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEee---c------ChHHHHHHHHHHHHhCC----
Q 043468 9 VEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQAS---Q------NQLAQMKAIAAIVQSWE---- 75 (720)
Q Consensus 9 v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~---p------~~~~~~~~~~~~l~~~~---- 75 (720)
+.-+.||-..+...+++.++.+.++=++....+.+. ....++.|+. + +....-+++.++.+.++
T Consensus 12 vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~---~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~ 88 (292)
T 3lou_A 12 VLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDD---LSARFFVRCVFHATDDADALRVDALRREFEPIAERFRMQWA 88 (292)
T ss_dssp EEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEET---TTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecC---CCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcCcEEE
Confidence 667899999999999999999999988865544221 2224666663 2 22344455555544432
Q ss_pred ------CeEEEEEEEcCCCcccCcHHHHHHHHHHc--CcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC----H
Q 043468 76 ------WHQVTVIYEDIDSSATGILPHLSDALREA--GAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS----L 143 (720)
Q Consensus 76 ------~~~v~ii~~~~~~g~~~~~~~~~~~~~~~--g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~----~ 143 (720)
.+|++|+.+... +. ++.+.+..++- +.+|+....-.+ +.... .++.+..+..+... .
T Consensus 89 l~~~~~~~ri~vl~Sg~g---~~-l~~ll~~~~~g~l~~~i~~Visn~~----~~~~~---A~~~gIp~~~~~~~~~~r~ 157 (292)
T 3lou_A 89 IHDVAARPKVLIMVSKLE---HC-LADLLFRWKMGELKMDIVGIVSNHP----DFAPL---AAQHGLPFRHFPITADTKA 157 (292)
T ss_dssp EEETTSCCEEEEEECSCC---HH-HHHHHHHHHHTSSCCEEEEEEESSS----TTHHH---HHHTTCCEEECCCCSSCHH
T ss_pred eeccCCCCEEEEEEcCCC---cC-HHHHHHHHHcCCCCcEEEEEEeCcH----HHHHH---HHHcCCCEEEeCCCcCCHH
Confidence 358888876442 33 56666665543 456666655332 22222 23345555544321 1
Q ss_pred HHHHHHHHHHHHcCC
Q 043468 144 ELAVHLFEKANKMKM 158 (720)
Q Consensus 144 ~~~~~~l~~a~~~g~ 158 (720)
+.-..+++..++.+.
T Consensus 158 ~~~~~~~~~l~~~~~ 172 (292)
T 3lou_A 158 QQEAQWLDVFETSGA 172 (292)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCC
Confidence 122345566666554
No 450
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=22.70 E-value=1.8e+02 Score=25.54 Aligned_cols=56 Identities=23% Similarity=0.211 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...++..+++.|.++... . +....+..+....+|+|++.. .+.+...+++..++..
T Consensus 17 ~~~l~~~L~~~g~~v~~~---~-----~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~ 74 (208)
T 1yio_A 17 REGLRNLLRSAGFEVETF---D-----CASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAIS 74 (208)
T ss_dssp HHHHHHHHHTTTCEEEEE---S-----SHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCceEEEc---C-----CHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 678888888888876521 1 555677777777899999875 3456677888888765
No 451
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=22.70 E-value=2.5e+02 Score=21.86 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC--HHHHHHHHHHHHHc
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS--LELAVHLFEKANKM 156 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~--~~~~~~~l~~a~~~ 156 (720)
.+.++..+++.|...+.. .. +....+..+....+|+|++... ..+...+++..++.
T Consensus 17 ~~~l~~~l~~~~~~~v~~--~~-----~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~ 74 (128)
T 1jbe_A 17 RRIVRNLLKELGFNNVEE--AE-----DGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAX 74 (128)
T ss_dssp HHHHHHHHHHTTCCCEEE--ES-----SHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCcEEEe--eC-----CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 677888888888632221 11 5556677777778999998753 34566777777763
No 452
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=22.53 E-value=2.2e+02 Score=21.91 Aligned_cols=54 Identities=9% Similarity=0.093 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHH
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANK 155 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~ 155 (720)
...+++.++..|..+... . +....+..+....+|+|++.. .+.+...+++..++
T Consensus 15 ~~~l~~~L~~~~~~v~~~---~-----~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 70 (122)
T 1zgz_A 15 QARLQSYFTQEGYTVSVT---A-----SGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRE 70 (122)
T ss_dssp HHHHHHHHHHTTCEEEEE---S-----SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCeEEEe---c-----CHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHh
Confidence 678888888888875321 1 344555566667899999875 33456677777776
No 453
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=22.49 E-value=1.3e+02 Score=27.61 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=67.8
Q ss_pred CCcEEecc-cCCcccccCCCCeEEEeecChHHHHHHHHHHHHh--CCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEE
Q 043468 32 QIPVLSFA-DATPNWATERWPFLLQASQNQLAQMKAIAAIVQS--WEWHQVTVIYEDIDSSATGILPHLSDALREAGAEI 108 (720)
Q Consensus 32 ~ip~is~~-~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~--~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v 108 (720)
+++++..+ .|...+.+.+..-. ..|.....++.+++.+.. ...++|.++..+.. ...+.+.|++.|.+|
T Consensus 75 ~~~~~aVG~~Ta~~L~~~G~~~~--~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~------r~~l~~~L~~~G~~v 146 (240)
T 3mw8_A 75 KATYYAVGDATADALALQGITAE--RSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGG------REAMADGLRLRGANV 146 (240)
T ss_dssp SSEEEESSHHHHHHHHHTTCCCE--ECC---CCGGGGGGCGGGTCCTTCEEEEEEESSS------CCHHHHHHHHTTCEE
T ss_pred CCeEEEECHHHHHHHHHcCCCCc--cCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCc------HHHHHHHHHHCCCEE
Confidence 45666655 33444443222221 335432246777776542 45578877765432 457888999999998
Q ss_pred EEEEecCCCCcc-cHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHH
Q 043468 109 IHVLALPHFPSS-RLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANK 155 (720)
Q Consensus 109 ~~~~~~~~~~~~-d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~ 155 (720)
.....|...... +.....+.+.+.+.|+ ++..++..+..|++.+.+
T Consensus 147 ~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~-v~ftS~s~v~~~~~~~~~ 193 (240)
T 3mw8_A 147 SYLEVYQRACPPLDAPASVSRWQSFGIDT-IVVTSGEVLENLINLVPK 193 (240)
T ss_dssp EEEEEEEEECCCCCHHHHHHHHHHHTCCE-EECCSHHHHHHHHHHSCG
T ss_pred EEEEEEEeeCCCCCHHHHHHHHHhCCCCE-EEEcCHHHHHHHHHHcch
Confidence 888777543321 4444455555557787 566788888888876543
No 454
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=22.36 E-value=54 Score=32.31 Aligned_cols=55 Identities=13% Similarity=0.098 Sum_probs=45.4
Q ss_pred cccchhhhhhh-----hccCCc-c--cccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccC
Q 043468 502 HQTGTFFWLSF-----NLHGEK-L--HSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLE 556 (720)
Q Consensus 502 ~~~~~~~~~~~-----~~~g~~-~--~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~ 556 (720)
..+..++|+++ ++.|.. | .+..++++..+-.+.++++.+.-++-+.+-+..+...
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 45677888888 666775 3 4788999999999999999999999999998876643
No 455
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=22.35 E-value=2.1e+02 Score=29.55 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecC
Q 043468 65 KAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALP 115 (720)
Q Consensus 65 ~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~ 115 (720)
+++.++-.+++.|||+|..+ .+ ..-.+.+.+.+.|.+++......
T Consensus 302 ~~~~d~~~~l~Gkrv~i~~~-~~-----~~~~l~~~L~elGm~vv~~~~~~ 346 (458)
T 3pdi_B 302 DAMLDTHFMLSSARTAIAAD-PD-----LLLGFDALLRSMGAHTVAAVVPA 346 (458)
T ss_dssp HHHHHHHHHHTTCEEEEECC-HH-----HHHHHHHHHHTTTCEEEEEEESS
T ss_pred HHHHHHHHhcCCCEEEEECC-cH-----HHHHHHHHHHHCCCEEEEEEECC
Confidence 34444445577899988533 22 25677788899999999887654
No 456
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=22.18 E-value=2.5e+02 Score=27.04 Aligned_cols=80 Identities=10% Similarity=0.050 Sum_probs=45.8
Q ss_pred EEEEEEEcCCC----cccCcHHHHHHHHHH-------cCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHH
Q 043468 78 QVTVIYEDIDS----SATGILPHLSDALRE-------AGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELA 146 (720)
Q Consensus 78 ~v~ii~~~~~~----g~~~~~~~~~~~~~~-------~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~ 146 (720)
+|+++...... |. .+.+.++..+++ .|.++.....-...+...-...++++.+.+++.|+........
T Consensus 4 ~IG~~~p~~g~~~~~~~-~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s~~~ 82 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGD-MEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSST 82 (346)
T ss_dssp EEEEEECSSSTTHHHHH-HHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSHHHH
T ss_pred EEEEEeCCCCcchhcCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCcHHH
Confidence 67888775431 22 235666666666 4554433322222222134456666666789998876666666
Q ss_pred HHHHHHHHHcCC
Q 043468 147 VHLFEKANKMKM 158 (720)
Q Consensus 147 ~~~l~~a~~~g~ 158 (720)
..+...+.+.++
T Consensus 83 ~~~~~~~~~~~i 94 (346)
T 1usg_A 83 QPASDIYEDEGI 94 (346)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
Confidence 666677777665
No 457
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=21.92 E-value=1.2e+02 Score=26.98 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=37.5
Q ss_pred eEEEEEEEcCCC--c---ccCcHHHHHHHHHHcCcE--EEEEEecCCCCcccHHHHHHHhhcC-CCeEEEEEc
Q 043468 77 HQVTVIYEDIDS--S---ATGILPHLSDALREAGAE--IIHVLALPHFPSSRLSEELEKLKGG-QCRVFVVHL 141 (720)
Q Consensus 77 ~~v~ii~~~~~~--g---~~~~~~~~~~~~~~~g~~--v~~~~~~~~~~~~d~~~~l~~i~~~-~~~vvil~~ 141 (720)
-+++||...|.- | +.. ...+.+.+++.|.+ +.....++.... .+.+.++++.+. ++|+|+..+
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n-~~~L~~~L~~~G~~~~v~~~~iV~Dd~~-~I~~al~~a~~~~~~DlVitTG 74 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKG-IPALEEWLTSALTTPFELETRLIPDEQA-IIEQTLCELVDEMSCHLVLTTG 74 (195)
T ss_dssp EEEEEEEEECC-------CCH-HHHHHHHHHHHBCSCEEEEEEEEESCHH-HHHHHHHHHHHTSCCSEEEEES
T ss_pred CEEEEEEECCCCCCCeEEchH-HHHHHHHHHHcCCCCceEEEEEeCCCHH-HHHHHHHHHHhcCCCCEEEECC
Confidence 478888776652 1 112 46778888888876 444444443222 566666665543 688888754
No 458
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=21.82 E-value=82 Score=25.82 Aligned_cols=57 Identities=9% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHHHHHHHHHc-CcEEEEEEecCCCCcccHHHHHHHhhcC-CCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREA-GAEIIHVLALPHFPSSRLSEELEKLKGG-QCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~-g~~v~~~~~~~~~~~~d~~~~l~~i~~~-~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...+++.+++. |..++... . +....+..+++. .+|+|++.. .+.+...++++.++..
T Consensus 26 ~~~l~~~L~~~~~~~~v~~~--~-----~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~~ 86 (145)
T 3kyj_B 26 RLYIASFIKTLPDFKVVAQA--A-----NGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKT 86 (145)
T ss_dssp HHHHHHHHTTCTTEEEEEEE--S-----SHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCceEEEEE--C-----CHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 67888888887 76654321 1 566677777777 799999965 3455666777776654
No 459
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=21.79 E-value=48 Score=31.47 Aligned_cols=81 Identities=9% Similarity=-0.033 Sum_probs=47.5
Q ss_pred eEEEEEEEcC---C-CcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC-HHHHHHHHH
Q 043468 77 HQVTVIYEDI---D-SSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS-LELAVHLFE 151 (720)
Q Consensus 77 ~~v~ii~~~~---~-~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~-~~~~~~~l~ 151 (720)
++|+++..+. + +. ..+.+.+++.+++.|.++.....-...+.......++.+.+.++|.|++... .+.....++
T Consensus 6 ~~Ig~v~~~~~~~~~~~-~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 84 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFW-SVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAK 84 (289)
T ss_dssp CEEEEECSCCCSSSHHH-HHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHT
T ss_pred cEEEEEeCCCCCCchHH-HHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHH
Confidence 5788887642 2 22 2347888889999998765422110111113445677777789998887653 333335566
Q ss_pred HHHHcCC
Q 043468 152 KANKMKM 158 (720)
Q Consensus 152 ~a~~~g~ 158 (720)
.+.+.+.
T Consensus 85 ~~~~~~i 91 (289)
T 3brs_A 85 EIKDAGI 91 (289)
T ss_dssp TTGGGTC
T ss_pred HHHHCCC
Confidence 6655554
No 460
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=21.64 E-value=4e+02 Score=24.54 Aligned_cols=114 Identities=12% Similarity=0.145 Sum_probs=62.4
Q ss_pred cCCCcEEecccCCccc------ccCCCCeEEEeecChHHHHHHHHHH--HHhCCCeEEEEEEEcCCCcccCcHHHHHHHH
Q 043468 30 KKQIPVLSFADATPNW------ATERWPFLLQASQNQLAQMKAIAAI--VQSWEWHQVTVIYEDIDSSATGILPHLSDAL 101 (720)
Q Consensus 30 ~~~ip~is~~~~~~~l------~~~~~~~~fr~~p~~~~~~~~~~~~--l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~ 101 (720)
..++|+|-.++.+..- ..+...|+-. |............ .......+|.++ +|+.. ....+...+
T Consensus 72 ~~~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~K--p~~~~~~~~~~~~~~~~~~~~~~ILiv-DD~~~----~~~~l~~~L 144 (259)
T 3luf_A 72 ERGLPVVILTADISEDKREAWLEAGVLDYVMK--DSRHSLQYAVGLVHRLYLNQQIEVLVV-DDSRT----SRHRTMAQL 144 (259)
T ss_dssp HTTCCEEEEECC-CHHHHHHHHHTTCCEEEEC--SSHHHHHHHHHHHHHHHHHTTCEEEEE-CSCHH----HHHHHHHHH
T ss_pred hCCCCEEEEEccCCHHHHHHHHHCCCcEEEeC--CchhHHHHHHHhhhhHhhcCCCcEEEE-eCCHH----HHHHHHHHH
Confidence 3578887766553321 1234456644 4433322222222 112233455444 43332 256777888
Q ss_pred HHcCcEEEEEEecCCCCcccHHHHHHHhhcC-CCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 102 REAGAEIIHVLALPHFPSSRLSEELEKLKGG-QCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 102 ~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~-~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
++.|..+... . +-...+..+++. .+|+|++.. .+.+...++++.++...
T Consensus 145 ~~~~~~v~~a---~-----~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~ 196 (259)
T 3luf_A 145 RKQLLQVHEA---S-----HAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYS 196 (259)
T ss_dssp HTTTCEEEEE---S-----SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCC
T ss_pred HHcCcEEEEe---C-----CHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccC
Confidence 8888765432 1 555666666655 479999865 55667778888877543
No 461
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=21.62 E-value=47 Score=26.96 Aligned_cols=57 Identities=7% Similarity=-0.099 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcC-cEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcCC
Q 043468 94 LPHLSDALREAG-AEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMKM 158 (720)
Q Consensus 94 ~~~~~~~~~~~g-~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g~ 158 (720)
...+++.+++.| .++.... +....+..+.+..+|+|++.. ...+...+++..++...
T Consensus 27 ~~~l~~~L~~~g~~~v~~~~--------~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 86 (135)
T 3snk_A 27 KRDVATRLDALAIYDVRVSE--------TDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWA 86 (135)
T ss_dssp HHHHHHHHHHTSSEEEEEEC--------GGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGT
T ss_pred HHHHHHHHhhcCCeEEEEec--------cHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCC
Confidence 788899999999 8765322 223344556667899999864 55667778888887664
No 462
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=21.59 E-value=1.6e+02 Score=25.05 Aligned_cols=78 Identities=10% Similarity=0.102 Sum_probs=49.3
Q ss_pred EEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhh-cCCCeEEEEE-c-CHHHHHHHHHHHH
Q 043468 78 QVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLK-GGQCRVFVVH-L-SLELAVHLFEKAN 154 (720)
Q Consensus 78 ~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~-~~~~~vvil~-~-~~~~~~~~l~~a~ 154 (720)
|++|+...-+. ..+.+...+.+++.|.........-+++- ++--.++++. ..+.|.||.. + .+....+++.+..
T Consensus 4 ri~IV~arfn~--~~Ll~gA~~~L~~~G~~~~i~~~~VPGaf-EiP~aak~la~~~~yDavIaLG~VG~T~Hfd~Va~~v 80 (156)
T 2b99_A 4 KVGIVDTTFAR--VDMASIAIKKLKELSPNIKIIRKTVPGIK-DLPVACKKLLEEEGCDIVMALGMPGKAEKDKVCAHEA 80 (156)
T ss_dssp EEEEEEESSCS--SCCHHHHHHHHHHHCTTCEEEEEEESSGG-GHHHHHHHHHHHSCCSEEEEEECCCSSHHHHHHHHHH
T ss_pred EEEEEEEecch--HHHHHHHHHHHHHcCCCCeEEEEECCcHH-HHHHHHHHHHhcCCCCEEEEecccCCcchhHHHHHHH
Confidence 68888876555 56689999999999975432222233554 6656667665 3478987753 3 3445555566655
Q ss_pred HcCC
Q 043468 155 KMKM 158 (720)
Q Consensus 155 ~~g~ 158 (720)
..|+
T Consensus 81 s~Gl 84 (156)
T 2b99_A 81 SLGL 84 (156)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 463
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=21.52 E-value=5.3e+02 Score=25.51 Aligned_cols=108 Identities=11% Similarity=0.092 Sum_probs=65.7
Q ss_pred CCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCc----ccHHHH
Q 043468 50 WPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPS----SRLSEE 125 (720)
Q Consensus 50 ~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~----~d~~~~ 125 (720)
.||-+.+.+.... .+.++++.. +++.|+++.... . ..+.+.+.+++.|+++... .++.+.. +.....
T Consensus 22 ~~~~I~~G~g~l~---~l~~~l~~~--~rvlIVtd~~v~--~-~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~ 92 (368)
T 3qbe_A 22 PPYPVVIGTGLLD---ELEDLLADR--HKVAVVHQPGLA--E-TAEEIRKRLAGKGVDAHRI-EIPDAEAGKDLPVVGFI 92 (368)
T ss_dssp SCEEEEEESCCHH---HHHHHHTTC--SEEEEEECGGGH--H-HHHHHHHHHHHTTCEEEEE-ECCSGGGGGBHHHHHHH
T ss_pred CCceEEEcCCHHH---HHHHHHHcC--CEEEEEECccHH--H-HHHHHHHHHHhcCCcceEE-EeCCCCCCCCHHHHHHH
Confidence 4777777777543 344555543 899999876643 2 2688999999999876433 3343322 145555
Q ss_pred HHHhhcC---CCeEEEEEc--CHHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 043468 126 LEKLKGG---QCRVFVVHL--SLELAVHLFEKANKMKMMEKDYIWITTD 169 (720)
Q Consensus 126 l~~i~~~---~~~vvil~~--~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 169 (720)
++.+++. +.|+|+..+ ...|+..++......|+ .++-+-|.
T Consensus 93 ~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 138 (368)
T 3qbe_A 93 WEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGV---SIVHLPTT 138 (368)
T ss_dssp HHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred HHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccCC---cEEEECCC
Confidence 5555543 468877655 34666777765555565 44444444
No 464
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=21.34 E-value=3.5e+02 Score=23.44 Aligned_cols=64 Identities=5% Similarity=-0.126 Sum_probs=40.3
Q ss_pred EEeHHHHHHHHHhC-CCccceEEecCCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEec
Q 043468 378 GFSIELFKALVEKL-PFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPV 452 (720)
Q Consensus 378 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~ 452 (720)
.+..+++..+.++. +.++++.... + ..+|.+|++|+++....... ..+ -+.++....++++++.
T Consensus 25 ~~l~~~l~~f~~~~P~i~l~i~~~~---~----~~~l~~g~~Dl~i~~~~~~~---~~~-~~~~l~~~~~~~v~~p 89 (219)
T 3kos_A 25 GCLFPLLSDFKRSYPHIDLHISTHN---N----RVDPAAEGLDYTIRYGGGAW---HDT-DAQYLCSALMSPLCSP 89 (219)
T ss_dssp HTHHHHHHHHHHHCTTEEEEEEEEC---S----CCCHHHHTCSEEEEEECSCC---TTE-EEEEEEECCEEEEBCH
T ss_pred HHHHhHHHHHHHHCCCceEEEEecc---C----ccccccCCccEEEEeCCCCC---CCc-eEEEecccceEEEeCh
Confidence 45677888888877 5555554322 1 12678999999985433222 223 2467888888888863
No 465
>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural G PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} SCOP: c.52.1.26
Probab=21.16 E-value=3.5e+02 Score=27.01 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=56.2
Q ss_pred HHHHHH-HhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccH----HHHHHHhhcCCCeEEEEE
Q 043468 66 AIAAIV-QSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRL----SEELEKLKGGQCRVFVVH 140 (720)
Q Consensus 66 ~~~~~l-~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~----~~~l~~i~~~~~~vvil~ 140 (720)
-+...+ ..++.++|.+|+++... ..++.+++.+++.|+++.........+..++ ...+++++..+.++++=.
T Consensus 17 nil~~l~~~~kp~~vv~I~s~~~~---~~~~~l~~~l~~~~i~~~~~~i~~~~d~~~i~~~~~~l~~~~~~~~~~v~~N~ 93 (385)
T 1xmx_A 17 LVTPLLDHRTVSRHIIFIGDHTQT---VIYQRLSDVLNKRNISTDFFEIPAGSNTSAIKSAIRELAETLKARGEEVKFNA 93 (385)
T ss_dssp HHHHHHSTTCCCCEEEEEECGGGH---HHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHhcccCCCCEEEEEECCcHH---HHHHHHHHHHHHcCCCceEEecCCccCHHHHHHHHHHHHHHhhccCCcEEEEe
Confidence 344444 45899999999996653 3378999999999998665554222222233 334444544556776654
Q ss_pred cC--HHHHHHHHHHHHHcCC
Q 043468 141 LS--LELAVHLFEKANKMKM 158 (720)
Q Consensus 141 ~~--~~~~~~~l~~a~~~g~ 158 (720)
+. -..+..++..+++.+.
T Consensus 94 TGGTK~Mslaay~~~~~~~~ 113 (385)
T 1xmx_A 94 SCGLRHRLLSAYEVFRSYHW 113 (385)
T ss_dssp SSSCHHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhcCC
Confidence 44 4555566777777654
No 466
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=21.16 E-value=1.9e+02 Score=31.20 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHH----HHHHHHHHHHHcCCCCCCeEEEEe
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLE----LAVHLFEKANKMKMMEKDYIWITT 168 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~----~~~~~l~~a~~~g~~~~~~~~i~~ 168 (720)
.+-+...++..|++|+..-.. . + +..++..++.++|+|.+++... ....+++.+++.|+ ..+++++
T Consensus 527 a~~va~~l~~aGfeVi~~g~~----~-t-ee~v~aa~e~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~---~~V~vgG 596 (637)
T 1req_B 527 EGFSSPVWHIAGIDTPQVEGG----T-T-AEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGA---KALYLSG 596 (637)
T ss_dssp HHHHHHHHHHTTCBCCEEECC----C-H-HHHHHHHHHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTC---SEEEEES
T ss_pred HHHHHHHHHhCCeeEEeCCCC----C-C-HHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHHHHhCCC---CeEEEeC
Confidence 677788899999998876332 2 5 6788888889999999987544 55667888889998 4466554
No 467
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=21.09 E-value=1.5e+02 Score=26.04 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...+...+++.|.++.... . +....+..+....+|+|++.. .+.+...+++..++..
T Consensus 26 ~~~l~~~L~~~g~~v~~~~--~-----~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~ 84 (205)
T 1s8n_A 26 RMDLAEMLREEGYEIVGEA--G-----DGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKR 84 (205)
T ss_dssp HHHHHHHHHHTTCEEEEEE--S-----SHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCEEEEEe--C-----CHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcC
Confidence 6788888888898765332 1 455566666667899999975 3445677777777754
No 468
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=21.08 E-value=5.4e+02 Score=24.44 Aligned_cols=77 Identities=9% Similarity=-0.060 Sum_probs=47.0
Q ss_pred cchHHHHHhcCcccEEEechhHHHHHHHhcCCCcEee-C-CeeecCceeeEecCCCCChHHHHHHHhcccccCcHHHHHH
Q 043468 578 LGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVA-G-PTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELET 655 (720)
Q Consensus 578 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~k~s~~~~~in~~i~~~~~~G~~~~~~~ 655 (720)
..+..+.+.+|++...+..............+ +..+ + +-......+++++++++-.+.--..|.-+.+......+.+
T Consensus 191 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~~~~~~~ 269 (330)
T 4eqb_A 191 ADEMKGYMIQNNVAIGVTFSGEASQMLEKNEN-LRYVVPTEASNLWFDNMVIPKTVKNQDSAYAFINFMLKPENALQNAE 269 (330)
T ss_dssp STTHHHHHHTTCCSEEEEEHHHHHHHHHHCTT-EEEECCTTCEEEEEEEEBCBTTCSCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred cHHHHHHHhcCCEEEEEechHHHHHHHhhCCC-eEEEeCCCccceEEEEEEEECCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 36788999999999888765554444443322 3332 2 1111123367899999877777777776665544444444
No 469
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=20.80 E-value=2e+02 Score=25.75 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEc--CHHHHHHHHHHHHHcC
Q 043468 94 LPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHL--SLELAVHLFEKANKMK 157 (720)
Q Consensus 94 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~--~~~~~~~~l~~a~~~g 157 (720)
...+...+++.|.+|.. .. +....+..+....+|+|++.. .+.+...+++..++..
T Consensus 20 ~~~l~~~L~~~g~~v~~---~~-----~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~ 77 (233)
T 1ys7_A 20 LASLERGLRLSGFEVAT---AV-----DGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMD 77 (233)
T ss_dssp HHHHHHHHHHTTCEEEE---ES-----SHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCEEEE---EC-----CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 67888888888887642 11 455666677777899999976 3446677788887765
No 470
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=20.77 E-value=1.2e+02 Score=27.56 Aligned_cols=54 Identities=15% Similarity=0.297 Sum_probs=35.4
Q ss_pred EEEEEEEcCCCcccCcHHHHHHHHHH-c-CcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEE
Q 043468 78 QVTVIYEDIDSSATGILPHLSDALRE-A-GAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVV 139 (720)
Q Consensus 78 ~v~ii~~~~~~g~~~~~~~~~~~~~~-~-g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil 139 (720)
++.+++.++... ..+++.+++.+++ . |++|..... +......++...+.|+++.
T Consensus 100 ~l~l~~~~~~~~-~~~a~~i~~~l~~~i~GI~v~i~~~-------~~~~~~~~~~~g~~d~~~~ 155 (229)
T 3o6p_A 100 TMDILSSDADSS-KKTVEFVQGSIQDALDGVKVTVSPV-------PFSVRLDRSNKGDFDAVIG 155 (229)
T ss_dssp EEEEEEECSHHH-HHHHHHHHHHHHHHSTTEEEEEEEE-------CHHHHHHHHHHTCCSEEEE
T ss_pred EEEEEeCCChHH-HHHHHHHHHHHHHhCCCcEEEEEec-------CHHHHHHHhhcCCceEEEe
Confidence 677777544322 3347889999999 8 988766532 4555666666667777664
No 471
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=20.67 E-value=2.7e+02 Score=28.96 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEe
Q 043468 66 AIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLA 113 (720)
Q Consensus 66 ~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~ 113 (720)
++.++-.++..|||+|. .+.+. .-.+.+.+.+.|.+|+....
T Consensus 322 al~~~~~~l~GKrv~i~-~~~~~-----~~~l~~~L~ElGmevv~~gt 363 (483)
T 3pdi_A 322 ALEPWRARLEGKRVLLY-TGGVK-----SWSVVSALQDLGMKVVATGT 363 (483)
T ss_dssp HHHHHHHHHTTCEEEEE-CSSSC-----HHHHHHHHHHHTCEEEEECB
T ss_pred HHHHHHHHhcCCEEEEE-CCCch-----HHHHHHHHHHCCCEEEEEec
Confidence 33444455778898875 33322 45667778999999887543
No 472
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=20.47 E-value=4.5e+02 Score=27.17 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=73.8
Q ss_pred HHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEcCCCcccCcHHHHHHHH
Q 043468 22 SSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDAL 101 (720)
Q Consensus 22 ~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~ 101 (720)
..+..++.++++.+++|.+ ..+...+ +...+.. .+..-+|++|..+... ...+...+
T Consensus 76 ~~l~~~A~~~g~rliGPNc--G~~~~~~----~~~~f~~------------~~~~G~vaivSqSGal-----~~~i~~~~ 132 (480)
T 3dmy_A 76 IQLKTRAREKGLLVMGPDC--GTSMIAG----TPLAFAN------------VMPEGNIGVIGASGTG-----IQELCSQI 132 (480)
T ss_dssp HHHHHHHHHTTCCEECSSC--CEEEETT----EEEESCC------------CCCEEEEEEEESCSHH-----HHHHHHHH
T ss_pred HHHHHHHHHcCCEEEecCc--cccccCC----ccccccC------------CCCCCCEEEEeccHHH-----HHHHHHHH
Confidence 4566788889999999887 2222111 1222221 0234589999665543 56777888
Q ss_pred HHcCcEEEEEEecCCC------CcccHHHHHHHhhcC-CCeEEEEEcC---HHHHHHHHHHHHHcC
Q 043468 102 REAGAEIIHVLALPHF------PSSRLSEELEKLKGG-QCRVFVVHLS---LELAVHLFEKANKMK 157 (720)
Q Consensus 102 ~~~g~~v~~~~~~~~~------~~~d~~~~l~~i~~~-~~~vvil~~~---~~~~~~~l~~a~~~g 157 (720)
.+.|+-+...+.+... ...++...++.+.+. +.++|+++.. ......|++.+++.+
T Consensus 133 ~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~~e~~~~~f~~~ar~~~ 198 (480)
T 3dmy_A 133 ALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATG 198 (480)
T ss_dssp HHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCCCHHHHHHHHHHHHHHC
T ss_pred HHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecCCcHHHHHHHHHHHhCC
Confidence 8888877776666443 212788888888755 7899999884 333488999888643
No 473
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=20.46 E-value=1.5e+02 Score=26.28 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=41.8
Q ss_pred hCCCeEEEEEEEcCC--Ccc-cC-cHHHHHHHHHH---cCcEEEEEEecCCCCcccHHHHHHHhhc-CCCeEEEEEc
Q 043468 73 SWEWHQVTVIYEDID--SSA-TG-ILPHLSDALRE---AGAEIIHVLALPHFPSSRLSEELEKLKG-GQCRVFVVHL 141 (720)
Q Consensus 73 ~~~~~~v~ii~~~~~--~g~-~~-~~~~~~~~~~~---~g~~v~~~~~~~~~~~~d~~~~l~~i~~-~~~~vvil~~ 141 (720)
.+..-+++||...|. .|. .. -...+.+.+++ .|.++.....++.... .+.+.+++..+ .++|+|+..+
T Consensus 11 v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~-~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIE-EIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp --CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHH-HHHHHHHHHHHTSCCSEEEEES
T ss_pred ccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHH-HHHHHHHHHhhcCCCCEEEEcC
Confidence 344457888887654 221 11 14567777877 7888887776665433 56666666543 3789888755
No 474
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=20.32 E-value=93 Score=29.79 Aligned_cols=67 Identities=13% Similarity=0.016 Sum_probs=40.9
Q ss_pred CeEEEEEEEcCCCcccCcHHHHHHHHHHcCc----EEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcC
Q 043468 76 WHQVTVIYEDIDSSATGILPHLSDALREAGA----EIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLS 142 (720)
Q Consensus 76 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~----~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~ 142 (720)
-++|+++.+-++..-..+.+.+++.+++.|. ++.....-...+.......++++.+.++|.|++.+.
T Consensus 8 t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 78 (302)
T 2qh8_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH
T ss_pred CcEEEEEEeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh
Confidence 4688988432222113347889999999998 433222212222224556788888889999887653
No 475
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=20.19 E-value=96 Score=25.84 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=41.1
Q ss_pred eEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCH-------HHHHHH
Q 043468 77 HQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSL-------ELAVHL 149 (720)
Q Consensus 77 ~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~-------~~~~~~ 149 (720)
+++.|+|.+..+..+.+++.+.+.+.+.|.++..... ... ..+ .+.|.|++.++. +.+..|
T Consensus 2 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~---~~~-------~~l--~~~d~vi~g~pt~g~g~~p~~~~~f 69 (147)
T 2hna_A 2 ADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHG---PLL-------EDL--PASGIWLVISSTHGAGDIPDNLSPF 69 (147)
T ss_dssp CSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECC---TTS-------CSS--CSEEEEEEECCTTTTCCTTSSCHHH
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecC---CCH-------HHc--ccCCeEEEEECccCCCCCChhHHHH
Confidence 3578888876665556678888888888876543211 110 011 256777775532 235677
Q ss_pred HHHHHHc
Q 043468 150 FEKANKM 156 (720)
Q Consensus 150 l~~a~~~ 156 (720)
++.....
T Consensus 70 ~~~l~~~ 76 (147)
T 2hna_A 70 YEALQEQ 76 (147)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7777654
No 476
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=20.18 E-value=3.3e+02 Score=28.54 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=41.1
Q ss_pred HhCCCeEEEEEEEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcC---CC-eEEEEEcCHHHHH
Q 043468 72 QSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGG---QC-RVFVVHLSLELAV 147 (720)
Q Consensus 72 ~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~---~~-~vvil~~~~~~~~ 147 (720)
.+++.|+|+|..+ .+ ..-.+.+.+.+.|.+++....-. .+. ++...++++.+. +. ..|+...+..+..
T Consensus 360 ~~l~GKrvaI~gd-~~-----~~~~la~fL~elGm~vv~v~~~~-~~~-~~~~~~~~~l~~~~~~~~~~v~~~~D~~~l~ 431 (523)
T 3u7q_B 360 TWLHGKRFALWGD-PD-----FVMGLVKFLLELGCEPVHILCHN-GNK-RWKKAVDAILAASPYGKNATVYIGKDLWHLR 431 (523)
T ss_dssp HHHTTCEEEEECS-HH-----HHHHHHHHHHHTTCEEEEEEETT-CCH-HHHHHHHHHHHTSGGGTTCEEEESCCHHHHH
T ss_pred HhcCCCEEEEECC-ch-----HHHHHHHHHHHcCCEEEEEEeCC-CCH-HHHHHHHHHHhhccCCCCcEEEECCCHHHHH
Confidence 4567899988732 21 25677778889999988876532 233 455545444332 11 1233344566666
Q ss_pred HHHH
Q 043468 148 HLFE 151 (720)
Q Consensus 148 ~~l~ 151 (720)
..++
T Consensus 432 ~~i~ 435 (523)
T 3u7q_B 432 SLVF 435 (523)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 477
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=20.12 E-value=1.3e+02 Score=26.34 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=38.3
Q ss_pred eEEEEEEEcCC--Cc---ccCcHHHHHHHHH---HcCcEEEEEEecCCCCcccHHHHHHHhhcC-CCeEEEEEc
Q 043468 77 HQVTVIYEDID--SS---ATGILPHLSDALR---EAGAEIIHVLALPHFPSSRLSEELEKLKGG-QCRVFVVHL 141 (720)
Q Consensus 77 ~~v~ii~~~~~--~g---~~~~~~~~~~~~~---~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~-~~~vvil~~ 141 (720)
-+++||...|. .| +.. ...+.+.++ +.|+++ ....++.... .+.+.+++..+. ++|+||..+
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn-~~~l~~~l~~l~~~G~~v-~~~iv~Dd~~-~I~~~l~~~~~~~~~DlVittG 76 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDIS-GKAIIDYLKDVIITPFEV-EYRVIPDERD-LIEKTLIELADEKGCSLILTTG 76 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHH-HHHHHHHHHHHBCSCCEE-EEEEECSCHH-HHHHHHHHHHHTSCCSEEEEES
T ss_pred CEEEEEEeCCcCCCCCeecch-HHHHHHHHHHHHhCCCEE-EEEEcCCCHH-HHHHHHHHHHhcCCCCEEEECC
Confidence 37888876554 11 111 356777666 789988 5555553322 666677666543 789988865
Done!