BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043469
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 2 EWSPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSIS 61
+W PR+++ E +++V+ ++PG+ + I V++D L++ + +E + S
Sbjct: 2 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSE----SSTETERFS 57
Query: 62 AYHRREYGGEPYQIVWTLPTNVDKDTISAEFLNGLLQIIIPK 103
RR YG + + LP + D D I+A NG+L+I IPK
Sbjct: 58 RIERR-YGS--FHRRFALPDSADADGITAAGRNGVLEIRIPK 96
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 2 EWSPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSIS 61
+W PR+++ E +++V+ ++PG+ + I V++D L++ + +E + S
Sbjct: 5 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSE----SSTETERFS 60
Query: 62 AYHRREYGGEPYQIVWTLPTNVDKDTISAEFLNGLLQIIIPK 103
RR YG + + LP + D D I+A NG+L+I IPK
Sbjct: 61 RIERR-YGS--FHRRFALPDSADADGITAAGRNGVLEIRIPK 99
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 22 IPGVHVNDIRVEVDDRKLTVMAKHS----TECWKVAGCSNGSISAYHRREYGGEPYQIVW 77
+PGV+ DI + L + AK S TE ++ Y E Y+ +
Sbjct: 74 LPGVNKEDIILNAVGDTLEIRAKRSPLMITESERII---------YSEIPEEEEIYRTI- 123
Query: 78 TLPTNVDKDTISAEFLNGLLQIIIPK 103
LP V ++ SA+F NG+L +I+PK
Sbjct: 124 KLPATVKEENASAKFENGVLSVILPK 149
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 22 IPGVHVNDIRVEVDDRKLTVMAKHS----TECWKVAGCSNGSISAYHRREYGGEPYQIVW 77
+PGV+ DI + L + AK S TE ++ Y E Y+ +
Sbjct: 60 LPGVNKEDIILNAVGDTLEIRAKRSPLMITESERII---------YSEIPEEEEIYRTI- 109
Query: 78 TLPTNVDKDTISAEFLNGLLQIIIPK 103
LP V ++ SA+F NG+L +I+PK
Sbjct: 110 KLPATVKEENASAKFENGVLSVILPK 135
>pdb|2NYF|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Nostoc Punctiforme
Length = 567
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 7 MNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTV-----MAKHSTE 48
MN++ L N + +IP + +D V V DR LT+ +A+H T+
Sbjct: 1 MNITSLQQNITRSWQIPFTNSSDSIVTVGDRNLTIDEVVNVARHGTQ 47
>pdb|2QOP|A Chain A, Crystal Structure Of The Transcriptional Regulator Acrr
From Escherichia Coli
pdb|3BCG|A Chain A, Conformational Changes Of The Acrr Regulator Reveal A
Mechanism Of Induction
pdb|3BCG|B Chain B, Conformational Changes Of The Acrr Regulator Reveal A
Mechanism Of Induction
Length = 215
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 32/57 (56%)
Query: 47 TECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDTISAEFLNGLLQIIIPK 103
+E W+++ + G + ++ ++ G+P ++ + +V + T++ E L++II K
Sbjct: 60 SEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHK 116
>pdb|3FGM|A Chain A, Crystal Structure Of L44fC83TC117VF132W MUTANT OF HUMAN
Acidic Fibroblast Growth Factor
pdb|3FGM|B Chain B, Crystal Structure Of L44fC83TC117VF132W MUTANT OF HUMAN
Acidic Fibroblast Growth Factor
Length = 146
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 31 RVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKD 86
R+E + + KH+ + W V NGS+ R YG + I+W LP V D
Sbjct: 94 RLEENHYNTYISKKHAEKNWFVGLKKNGSVKRGPRTHYGQK--AILW-LPLPVSSD 146
>pdb|1KHV|A Chain A, Crystal Structure Of Rabbit Hemorrhagic Disease Virus
Rna-Dependent Rna Polymerase Complexed With Lu3+
pdb|1KHV|B Chain B, Crystal Structure Of Rabbit Hemorrhagic Disease Virus
Rna-Dependent Rna Polymerase Complexed With Lu3+
pdb|1KHW|A Chain A, Crystal Structure Of Rabbit Hemorrhagic Disease Virus
Rna-dependent Rna Polymerase Complexed With Mn2+
pdb|1KHW|B Chain B, Crystal Structure Of Rabbit Hemorrhagic Disease Virus
Rna-dependent Rna Polymerase Complexed With Mn2+
Length = 516
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 22 IPGVHVNDIRVEVDDRKLTVMAKHSTECWKVA 53
+PG ++ ++ V D+ V+AKH +CW VA
Sbjct: 130 VPGKKIDHVKDGVMDQ---VLAKHLYKCWSVA 158
>pdb|4FEI|A Chain A, Hsp17.7 From Deinococcus Radiodurans
Length = 102
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 3 WSPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKH 45
W+P + + G++ + +++PGV + + D +LTV +
Sbjct: 5 WTPAADWRDAGTHLDLLLDVPGVDAGTLALAEDGGQLTVSGER 47
>pdb|1D0H|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With N-Acetyl-
Galactosamine
Length = 469
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 56 SNGSISAYHRREYGGEPYQIVWTLPTN-VDKDTISAEFL 93
+NG ++ Y+RR Y G + I P N +D S +F+
Sbjct: 312 TNGKLNIYYRRLYNGLKFIIKRYTPNNEIDSFVKSGDFI 350
>pdb|1FV2|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|B Chain B, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
Length = 472
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 56 SNGSISAYHRREYGGEPYQIVWTLPTN-VDKDTISAEFL 93
+NG ++ Y+RR Y G + I P N +D S +F+
Sbjct: 315 TNGKLNIYYRRLYNGLKFIIKRYTPNNEIDSFVKSGDFI 353
>pdb|1A8D|A Chain A, Tetanus Toxin C Fragment
pdb|1AF9|A Chain A, Tetanus Neurotoxin C Fragment
Length = 452
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 56 SNGSISAYHRREYGGEPYQIVWTLPTN-VDKDTISAEFL 93
+NG ++ Y+RR Y G + I P N +D S +F+
Sbjct: 295 TNGKLNIYYRRLYNGLKFIIKRYTPNNEIDSFVKSGDFI 333
>pdb|1DLL|A Chain A, The Hc Fragement Of Tetanus Toxin Complexed With Lactose
pdb|1YXW|A Chain A, A Common Binding Site For Disialyllactose And A
Tri-Peptide In The C-Fragment Of Tetanus Neurotoxin
pdb|1YYN|A Chain A, A Common Binding Site For Disialyllactose And A
Tri-Peptide In The C-Fragment Of Tetanus Neurotoxin
Length = 441
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 56 SNGSISAYHRREYGGEPYQIVWTLPTN-VDKDTISAEFL 93
+NG ++ Y+RR Y G + I P N +D S +F+
Sbjct: 284 TNGKLNIYYRRLYNGLKFIIKRYTPNNEIDSFVKSGDFI 322
>pdb|3FJ8|A Chain A, Crystal Structure Of C117i Mutant Of Human Acidic
Fibroblast Growth Factor
pdb|3FJ8|B Chain B, Crystal Structure Of C117i Mutant Of Human Acidic
Fibroblast Growth Factor
Length = 146
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 31 RVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKD 86
R+E + + KH+ + W V NGSI R YG + + LP V D
Sbjct: 94 RLEENHYNTYISKKHAEKNWFVGLKKNGSIKRGPRTHYG---QKAILFLPLPVSSD 146
>pdb|3HMY|A Chain A, Crystal Structure Of Hcr/t Complexed With Gt2
pdb|3HN1|A Chain A, Crystal Structure Of HcrT COMPLEXED WITH GT2 AND LACTOSE
Length = 450
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 56 SNGSISAYHRREYGGEPYQIVWTLPTN-VDKDTISAEFL 93
+NG ++ Y+RR Y G + I P N +D S +F+
Sbjct: 293 TNGKLNIYYRRLYNGLKFIIKRYTPNNEIDSFVKSGDFI 331
>pdb|1DFQ|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With Sialic
Acid
Length = 444
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 56 SNGSISAYHRREYGGEPYQIVWTLPTN-VDKDTISAEFL 93
+NG ++ Y+RR Y G + I P N +D S +F+
Sbjct: 287 TNGKLNIYYRRLYNGLKFIIKRYTPNNEIDSFVKSGDFI 325
>pdb|1DIW|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With Galactose
Length = 441
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 56 SNGSISAYHRREYGGEPYQIVWTLPTN-VDKDTISAEFL 93
+NG ++ Y+RR Y G + I P N +D S +F+
Sbjct: 284 TNGKLNIYYRRLYNGLKFIIKRYTPNNEIDSFVKSGDFI 322
>pdb|3OY2|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY2|B Chain B, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY7|A Chain A, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
pdb|3OY7|B Chain B, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
Length = 413
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 64 HRREYGGEPYQIVWTLPTNVDKDTISAEFLNGLLQI 99
+R+EYG V T PT D + +F N LL++
Sbjct: 358 NRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRV 393
>pdb|3SAL|A Chain A, Crystal Structure Of Influenza A Virus Neuraminidase N5
pdb|3SAL|B Chain B, Crystal Structure Of Influenza A Virus Neuraminidase N5
pdb|3SAN|A Chain A, Crystal Structure Of Influenza A Virus Neuraminidase N5
Complexed With Zanamivir
pdb|3SAN|B Chain B, Crystal Structure Of Influenza A Virus Neuraminidase N5
Complexed With Zanamivir
pdb|3TI8|A Chain A, Crystal Structure Of Influenza A Virus Neuraminidase N5
Complexed With Laninamivir
pdb|3TI8|B Chain B, Crystal Structure Of Influenza A Virus Neuraminidase N5
Complexed With Laninamivir
Length = 395
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 14 SNYVMTVEIP-GVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEP 72
S Y + +P G N + + + + A H + W G S AY YGG P
Sbjct: 72 SPYRALMSVPLGSSPNAYQAKFESVAWSATACHDGKKWLAVGISGADDDAYAVIHYGGMP 131
Query: 73 YQIV 76
+V
Sbjct: 132 TDVV 135
>pdb|3FJD|A Chain A, Crystal Structure Of L44fF132W MUTANT OF HUMAN ACIDIC
Fibroblast Growth Factor
pdb|3FJD|B Chain B, Crystal Structure Of L44fF132W MUTANT OF HUMAN ACIDIC
Fibroblast Growth Factor
Length = 146
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 31 RVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKD 86
R+E + + KH+ + W V NGS R YG + I+W LP V D
Sbjct: 94 RLEENHYNTYISKKHAEKNWFVGLKKNGSCKRGPRTHYGQK--AILW-LPLPVSSD 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,209,061
Number of Sequences: 62578
Number of extensions: 112481
Number of successful extensions: 369
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 32
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)