Query 043469
Match_columns 104
No_of_seqs 108 out of 1041
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:23:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06472 ACD_ScHsp26_like Alpha 100.0 5.5E-29 1.2E-33 150.7 11.7 91 6-103 1-92 (92)
2 COG0071 IbpA Molecular chapero 100.0 1.1E-28 2.3E-33 160.6 12.6 95 3-104 39-133 (146)
3 cd06471 ACD_LpsHSP_like Group 100.0 1.9E-28 4.2E-33 148.4 11.5 93 5-103 1-93 (93)
4 PRK11597 heat shock chaperone 100.0 4.5E-28 9.7E-33 156.8 12.0 92 2-104 30-122 (142)
5 PRK10743 heat shock protein Ib 100.0 2E-27 4.3E-32 153.1 11.7 89 5-104 35-124 (137)
6 cd06470 ACD_IbpA-B_like Alpha- 100.0 3.7E-27 8E-32 142.3 12.1 89 5-103 1-90 (90)
7 cd06497 ACD_alphaA-crystallin_ 99.9 1E-25 2.2E-30 135.0 11.1 82 8-103 4-86 (86)
8 PF00011 HSP20: Hsp20/alpha cr 99.9 2.9E-25 6.2E-30 136.2 12.0 88 8-104 1-88 (102)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 3.9E-25 8.4E-30 131.7 11.2 82 8-103 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 5.9E-25 1.3E-29 131.1 11.0 82 9-104 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 6.1E-25 1.3E-29 130.2 8.9 79 8-103 2-81 (81)
12 cd06476 ACD_HspB2_like Alpha c 99.9 6.5E-24 1.4E-28 126.3 10.8 81 9-103 2-83 (83)
13 cd06464 ACD_sHsps-like Alpha-c 99.9 1.2E-23 2.6E-28 125.0 11.3 88 8-103 1-88 (88)
14 cd06481 ACD_HspB9_like Alpha c 99.9 7.4E-24 1.6E-28 127.1 10.3 83 11-103 4-87 (87)
15 cd06475 ACD_HspB1_like Alpha c 99.9 1.2E-23 2.6E-28 126.0 10.8 82 7-102 3-85 (86)
16 cd06526 metazoan_ACD Alpha-cry 99.9 4.7E-23 1E-27 122.6 8.6 78 12-103 5-83 (83)
17 cd06482 ACD_HspB10 Alpha cryst 99.9 1E-22 2.3E-27 122.0 9.5 80 12-102 6-86 (87)
18 cd06477 ACD_HspB3_Like Alpha c 99.9 2.6E-22 5.6E-27 119.4 10.6 79 10-102 3-82 (83)
19 cd06480 ACD_HspB8_like Alpha-c 99.8 2.7E-19 5.8E-24 108.0 9.3 82 8-103 9-91 (91)
20 KOG0710 Molecular chaperone (s 99.8 3.1E-19 6.8E-24 121.1 6.2 98 2-104 82-180 (196)
21 cd00298 ACD_sHsps_p23-like Thi 99.7 8.7E-17 1.9E-21 92.5 9.6 80 9-103 1-80 (80)
22 KOG3591 Alpha crystallins [Pos 99.6 6.6E-15 1.4E-19 98.2 10.1 85 6-104 64-149 (173)
23 cd06469 p23_DYX1C1_like p23_li 99.5 2E-13 4.4E-18 79.6 9.1 69 9-104 1-69 (78)
24 cd06463 p23_like Proteins cont 99.3 3.7E-11 7.9E-16 70.1 9.4 74 9-104 1-74 (84)
25 PF05455 GvpH: GvpH; InterPro 99.2 2.1E-10 4.6E-15 76.3 10.4 74 3-103 90-167 (177)
26 cd06466 p23_CS_SGT1_like p23_l 99.1 8.5E-10 1.8E-14 64.9 7.9 75 8-104 1-75 (84)
27 PF04969 CS: CS domain; Inter 99.0 1.8E-08 3.9E-13 58.1 11.4 77 5-103 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.7 2.7E-07 5.9E-12 57.0 10.1 77 5-104 1-77 (108)
29 PF08190 PIH1: pre-RNA process 98.6 4.2E-07 9E-12 65.5 9.2 65 13-102 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.6 1E-06 2.2E-11 52.0 8.6 75 8-104 1-75 (84)
31 cd06468 p23_CacyBP p23_like do 98.4 8E-06 1.7E-10 48.8 10.0 77 6-104 3-83 (92)
32 cd06488 p23_melusin_like p23_l 98.4 8.9E-06 1.9E-10 48.4 9.7 77 6-104 2-78 (87)
33 cd06467 p23_NUDC_like p23_like 98.4 5.6E-06 1.2E-10 48.6 8.4 73 7-104 1-75 (85)
34 cd06493 p23_NUDCD1_like p23_NU 98.2 2.8E-05 6E-10 46.0 8.6 73 7-104 1-75 (85)
35 cd06494 p23_NUDCD2_like p23-li 98.1 6E-05 1.3E-09 45.6 9.0 74 5-104 6-81 (93)
36 cd00237 p23 p23 binds heat sho 98.1 0.00015 3.3E-09 44.8 10.3 76 5-104 2-77 (106)
37 KOG1309 Suppressor of G2 allel 97.8 0.00012 2.5E-09 49.2 6.9 79 4-104 3-81 (196)
38 PLN03088 SGT1, suppressor of 97.8 0.00027 5.8E-09 52.0 8.9 78 5-104 157-234 (356)
39 cd06490 p23_NCB5OR p23_like do 97.4 0.0073 1.6E-07 35.9 9.9 74 7-104 1-78 (87)
40 cd06492 p23_mNUDC_like p23-lik 97.2 0.005 1.1E-07 36.6 8.1 72 8-104 2-77 (87)
41 cd06495 p23_NUDCD3_like p23-li 97.2 0.011 2.4E-07 36.3 9.5 79 4-104 4-85 (102)
42 KOG2265 Nuclear distribution p 93.1 0.92 2E-05 30.5 7.2 74 5-103 19-94 (179)
43 KOG3158 HSP90 co-chaperone p23 92.3 0.72 1.6E-05 31.0 5.9 76 4-103 7-82 (180)
44 PF13349 DUF4097: Domain of un 89.9 3.7 7.9E-05 26.3 9.8 81 6-100 67-147 (166)
45 PF12992 DUF3876: Domain of un 88.4 2.4 5.2E-05 25.7 5.4 39 4-42 25-68 (95)
46 cd00298 ACD_sHsps_p23-like Thi 87.5 1.7 3.7E-05 23.6 4.2 32 13-44 47-79 (80)
47 KOG1667 Zn2+-binding protein M 87.4 4.4 9.5E-05 29.1 6.9 78 6-104 216-293 (320)
48 cd06469 p23_DYX1C1_like p23_li 87.2 2.6 5.5E-05 23.7 4.9 33 14-46 36-69 (78)
49 COG5091 SGT1 Suppressor of G2 86.5 0.54 1.2E-05 34.1 2.0 44 4-47 176-219 (368)
50 cd06476 ACD_HspB2_like Alpha c 85.9 1.8 3.9E-05 25.3 3.8 31 71-102 7-37 (83)
51 cd06471 ACD_LpsHSP_like Group 85.7 1.8 3.8E-05 25.5 3.8 30 14-43 62-91 (93)
52 cd06477 ACD_HspB3_Like Alpha c 85.5 2 4.3E-05 25.2 3.8 30 72-102 8-37 (83)
53 PF14913 DPCD: DPCD protein fa 85.5 9.4 0.0002 26.1 8.4 75 4-103 86-168 (194)
54 cd06482 ACD_HspB10 Alpha cryst 85.4 2 4.3E-05 25.5 3.8 30 72-102 9-38 (87)
55 cd06497 ACD_alphaA-crystallin_ 85.0 2.2 4.7E-05 25.1 3.9 30 71-101 10-39 (86)
56 cd06478 ACD_HspB4-5-6 Alpha-cr 84.8 2.5 5.5E-05 24.6 4.1 30 71-101 7-36 (83)
57 cd06526 metazoan_ACD Alpha-cry 84.2 2.2 4.8E-05 24.6 3.7 31 14-44 50-82 (83)
58 PF04972 BON: BON domain; Int 83.9 3.3 7.2E-05 22.4 4.1 27 23-49 12-38 (64)
59 cd06463 p23_like Proteins cont 83.6 4.3 9.3E-05 22.6 4.7 36 13-48 40-76 (84)
60 cd06464 ACD_sHsps-like Alpha-c 83.1 4.2 9.1E-05 23.0 4.6 33 12-44 54-87 (88)
61 cd06470 ACD_IbpA-B_like Alpha- 81.9 3.4 7.4E-05 24.3 3.9 31 71-102 11-41 (90)
62 cd06472 ACD_ScHsp26_like Alpha 81.6 4.3 9.4E-05 23.8 4.3 31 13-43 59-90 (92)
63 cd06479 ACD_HspB7_like Alpha c 81.6 3.6 7.7E-05 24.0 3.8 30 72-102 9-38 (81)
64 cd06498 ACD_alphaB-crystallin_ 81.1 3.9 8.4E-05 23.9 3.9 30 71-101 7-36 (84)
65 cd06480 ACD_HspB8_like Alpha-c 80.2 5.6 0.00012 23.8 4.4 30 14-43 58-89 (91)
66 PF00011 HSP20: Hsp20/alpha cr 77.8 5.1 0.00011 23.7 3.8 36 14-49 55-91 (102)
67 PRK10743 heat shock protein Ib 77.4 5 0.00011 25.8 3.8 30 71-101 45-74 (137)
68 cd06481 ACD_HspB9_like Alpha c 77.2 6.1 0.00013 23.2 3.9 30 72-102 8-37 (87)
69 cd06475 ACD_HspB1_like Alpha c 77.0 6.5 0.00014 23.0 4.0 30 71-101 10-39 (86)
70 PF08308 PEGA: PEGA domain; I 74.2 12 0.00027 20.5 5.2 40 7-46 27-68 (71)
71 PRK10568 periplasmic protein; 72.3 11 0.00023 25.7 4.7 27 23-49 73-99 (203)
72 COG0071 IbpA Molecular chapero 70.7 15 0.00033 23.5 4.9 37 13-49 99-136 (146)
73 PRK11597 heat shock chaperone 70.2 9 0.0002 24.8 3.7 30 72-102 44-73 (142)
74 cd06466 p23_CS_SGT1_like p23_l 69.0 18 0.0004 20.3 5.1 34 13-46 41-75 (84)
75 PF01954 DUF104: Protein of un 69.0 5.5 0.00012 22.0 2.2 14 86-99 3-16 (60)
76 CHL00140 rpl6 ribosomal protei 68.8 27 0.00058 23.4 5.9 22 27-48 12-33 (178)
77 TIGR00251 conserved hypothetic 67.8 17 0.00038 21.5 4.3 40 9-49 1-43 (87)
78 KOG3260 Calcyclin-binding prot 67.4 14 0.00029 25.3 4.2 37 7-43 77-113 (224)
79 cd06489 p23_CS_hSgt1_like p23_ 66.3 22 0.00048 20.2 4.7 34 13-46 41-75 (84)
80 KOG3591 Alpha crystallins [Pos 65.7 11 0.00023 25.3 3.4 35 15-49 116-152 (173)
81 PRK05518 rpl6p 50S ribosomal p 65.1 40 0.00086 22.7 6.3 25 23-47 9-33 (180)
82 TIGR03653 arch_L6P archaeal ri 63.7 38 0.00082 22.6 5.8 21 27-47 7-27 (170)
83 PF14814 UB2H: Bifunctional tr 62.2 20 0.00043 20.9 3.9 41 58-98 28-69 (85)
84 TIGR03654 L6_bact ribosomal pr 61.7 45 0.00098 22.2 6.3 21 27-47 11-31 (175)
85 PTZ00027 60S ribosomal protein 58.8 49 0.0011 22.5 5.8 25 22-46 8-32 (190)
86 PF09985 DUF2223: Domain of un 58.2 61 0.0013 22.6 7.6 95 6-104 35-142 (228)
87 cd06465 p23_hB-ind1_like p23_l 57.6 36 0.00078 20.4 4.6 35 13-47 43-78 (108)
88 PF14913 DPCD: DPCD protein fa 57.5 16 0.00035 25.0 3.2 44 7-50 123-173 (194)
89 KOG3247 Uncharacterized conser 57.2 5.6 0.00012 30.4 1.1 74 4-104 3-79 (466)
90 cd06494 p23_NUDCD2_like p23-li 56.5 41 0.00088 20.0 5.4 33 69-101 13-45 (93)
91 COG4004 Uncharacterized protei 56.4 38 0.00081 20.5 4.3 33 7-43 26-58 (96)
92 cd06467 p23_NUDC_like p23_like 56.0 35 0.00076 19.2 5.2 31 72-102 9-39 (85)
93 PRK11198 LysM domain/BON super 55.2 23 0.0005 22.9 3.6 27 23-49 38-64 (147)
94 PRK05090 hypothetical protein; 54.4 46 0.001 20.1 4.7 41 9-50 4-45 (95)
95 PTZ00179 60S ribosomal protein 54.2 66 0.0014 21.8 6.0 22 27-48 12-33 (189)
96 PRK05498 rplF 50S ribosomal pr 52.7 67 0.0015 21.4 6.1 22 27-48 12-33 (178)
97 PF08845 SymE_toxin: Toxin Sym 51.1 27 0.00058 19.0 2.9 22 21-42 34-56 (57)
98 cd00503 Frataxin Frataxin is a 51.0 19 0.00041 22.1 2.5 17 86-102 28-44 (105)
99 PF01491 Frataxin_Cyay: Fratax 49.1 28 0.0006 21.4 3.1 18 86-103 30-47 (109)
100 PRK00446 cyaY frataxin-like pr 48.4 21 0.00045 21.9 2.4 16 88-103 29-44 (105)
101 PF07873 YabP: YabP family; I 48.4 16 0.00034 20.3 1.7 24 25-48 23-46 (66)
102 PF04969 CS: CS domain; Inter 48.0 45 0.00098 18.1 6.7 30 14-43 47-77 (79)
103 PRK00647 hypothetical protein; 47.4 50 0.0011 20.0 3.9 37 13-50 3-40 (96)
104 TIGR03421 FeS_CyaY iron donor 47.2 20 0.00043 21.9 2.2 17 87-103 26-42 (102)
105 cd02178 GH16_beta_agarase Beta 46.5 45 0.00098 23.3 4.3 49 32-81 60-109 (258)
106 PF06964 Alpha-L-AF_C: Alpha-L 43.2 43 0.00093 21.9 3.5 26 78-103 150-175 (177)
107 PF06977 SdiA-regulated: SdiA- 42.5 1.2E+02 0.0026 21.4 6.9 69 15-99 9-80 (248)
108 cd02175 GH16_lichenase lichena 42.5 74 0.0016 21.5 4.7 48 27-81 31-79 (212)
109 TIGR02856 spore_yqfC sporulati 42.2 22 0.00048 20.9 1.8 24 25-48 41-64 (85)
110 PF12080 GldM_C: GldM C-termin 42.1 43 0.00094 22.4 3.4 39 7-45 7-45 (181)
111 PF13715 DUF4480: Domain of un 42.0 59 0.0013 18.3 3.7 24 13-36 43-66 (88)
112 PF08473 VGCC_alpha2: Neuronal 41.8 17 0.00038 21.9 1.3 43 59-102 42-84 (94)
113 COG0097 RplF Ribosomal protein 40.5 1.2E+02 0.0025 20.6 5.9 26 23-48 8-33 (178)
114 PRK04021 hypothetical protein; 40.1 82 0.0018 18.8 4.3 40 9-49 2-44 (92)
115 TIGR03422 mito_frataxin fratax 39.8 21 0.00046 21.6 1.5 15 89-103 30-44 (97)
116 KOG3413 Mitochondrial matrix p 39.6 15 0.00033 24.1 0.9 22 81-102 67-88 (156)
117 PF14014 DUF4230: Protein of u 37.4 75 0.0016 20.2 3.9 30 13-42 45-74 (157)
118 COG1872 Uncharacterized conser 37.3 66 0.0014 19.8 3.4 41 9-49 6-48 (102)
119 TIGR02892 spore_yabP sporulati 37.1 30 0.00066 20.4 1.8 23 25-47 22-44 (85)
120 COG4456 VagC Virulence-associa 36.2 64 0.0014 18.6 3.0 24 20-46 20-43 (74)
121 cd02180 GH16_fungal_KRE6_gluca 35.0 1E+02 0.0023 22.4 4.7 45 32-81 43-90 (295)
122 PF14651 Lipocalin_7: Lipocali 34.7 68 0.0015 20.4 3.3 24 2-25 34-57 (128)
123 cd08023 GH16_laminarinase_like 34.5 1.5E+02 0.0032 20.1 6.1 54 25-82 35-91 (235)
124 KOG4379 Uncharacterized conser 34.3 94 0.002 24.5 4.5 39 4-42 289-328 (596)
125 cd02182 GH16_Strep_laminarinas 34.0 1.1E+02 0.0025 21.3 4.7 16 32-47 48-64 (259)
126 PF03368 Dicer_dimer: Dicer di 33.3 60 0.0013 19.0 2.8 24 3-26 20-43 (90)
127 PF05309 TraE: TraE protein; 32.8 1.4E+02 0.003 19.9 4.8 24 26-49 129-152 (187)
128 PF10988 DUF2807: Protein of u 32.5 62 0.0013 20.9 3.0 36 8-44 14-49 (181)
129 KOG2853 Possible oxidoreductas 32.2 16 0.00034 27.9 0.1 28 65-92 129-156 (509)
130 PF14545 DBB: Dof, BCAP, and B 32.2 1.5E+02 0.0032 19.4 5.2 34 13-46 48-85 (142)
131 cd02859 AMPKbeta_GBD_like AMP- 32.1 47 0.001 18.9 2.1 22 2-23 23-44 (79)
132 PF13834 DUF4193: Domain of un 31.8 35 0.00075 20.9 1.5 21 15-35 42-64 (99)
133 PRK13726 conjugal transfer pil 31.4 1.5E+02 0.0032 20.1 4.7 24 26-49 129-152 (188)
134 PF08300 HCV_NS5a_1a: Hepatiti 30.3 92 0.002 17.4 2.9 18 87-104 29-46 (62)
135 PF08918 PhoQ_Sensor: PhoQ Sen 30.2 37 0.0008 22.9 1.6 15 89-103 53-67 (180)
136 PF05455 GvpH: GvpH; InterPro 30.0 1.8E+02 0.0039 19.7 5.8 38 12-49 134-171 (177)
137 cd00413 Glyco_hydrolase_16 gly 29.4 1.6E+02 0.0035 19.4 4.7 49 26-82 28-79 (210)
138 PF10830 DUF2553: Protein of u 29.1 74 0.0016 18.5 2.5 18 85-102 7-24 (76)
139 smart00675 DM11 Domains in hyp 28.6 1.8E+02 0.0039 19.3 4.7 26 24-49 29-54 (164)
140 smart00813 Alpha-L-AF_C Alpha- 28.4 1.8E+02 0.0039 19.2 4.9 27 78-104 161-188 (189)
141 PF12971 NAGLU_N: Alpha-N-acet 27.7 96 0.0021 18.0 3.0 32 16-47 20-52 (86)
142 COG1965 CyaY Protein implicate 27.2 61 0.0013 20.1 2.0 16 88-103 30-45 (106)
143 PF14869 DUF4488: Domain of un 26.5 1.8E+02 0.004 18.7 8.6 20 5-24 27-46 (133)
144 PRK11023 outer membrane lipopr 25.9 1.3E+02 0.0028 20.2 3.7 25 23-47 140-164 (191)
145 PF02120 Flg_hook: Flagellar h 24.6 84 0.0018 17.6 2.3 33 15-47 14-46 (85)
146 PRK01379 cyaY frataxin-like pr 24.5 74 0.0016 19.5 2.1 15 88-102 30-44 (103)
147 cd02177 GH16_kappa_carrageenas 24.1 2.8E+02 0.006 19.9 6.3 17 31-47 45-61 (269)
148 PF03803 Scramblase: Scramblas 24.1 2.3E+02 0.005 19.0 6.3 23 3-25 128-150 (221)
149 PF02594 DUF167: Uncharacteris 23.8 1.6E+02 0.0034 16.9 4.1 36 13-49 1-38 (77)
150 PF00879 Defensin_propep: Defe 23.7 81 0.0018 16.9 1.9 18 20-37 32-49 (52)
151 PRK09798 antitoxin MazE; Provi 23.5 1.1E+02 0.0024 17.8 2.7 23 24-46 26-49 (82)
152 PF00403 HMA: Heavy-metal-asso 23.0 46 0.00099 17.5 0.9 22 22-45 23-44 (62)
153 PLN02711 Probable galactinol-- 21.9 1.2E+02 0.0026 25.3 3.3 26 78-103 737-764 (777)
154 PRK13605 endoribonuclease SymE 21.8 1.5E+02 0.0033 18.6 3.1 26 23-48 50-76 (113)
155 PF00677 Lum_binding: Lumazine 21.5 1.8E+02 0.0039 16.8 4.5 37 8-45 12-53 (85)
156 PF13620 CarboxypepD_reg: Carb 21.3 1.6E+02 0.0034 16.1 3.0 22 14-35 48-70 (82)
157 PF13449 Phytase-like: Esteras 21.2 2.1E+02 0.0046 20.7 4.3 51 25-85 85-135 (326)
158 cd05763 Ig_1 Subgroup of the i 21.1 1.5E+02 0.0033 15.8 6.6 34 5-43 13-46 (75)
159 PF00347 Ribosomal_L6: Ribosom 20.9 1.2E+02 0.0025 16.7 2.4 19 27-45 2-20 (77)
160 PF05258 DUF721: Protein of un 20.7 1.1E+02 0.0023 17.1 2.2 13 90-102 44-56 (89)
161 PF07122 VLPT: Variable length 20.5 32 0.0007 16.2 -0.1 16 17-32 13-28 (30)
162 PF03153 TFIIA: Transcription 20.3 66 0.0014 23.8 1.5 15 85-99 345-359 (375)
No 1
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.96 E-value=5.5e-29 Score=150.68 Aligned_cols=91 Identities=31% Similarity=0.522 Sum_probs=84.1
Q ss_pred eeeEEEcCCEEEEEEEcCCCCCCCeEEEEeC-CEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcc
Q 043469 6 RMNVSELGSNYVMTVEIPGVHVNDIRVEVDD-RKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVD 84 (104)
Q Consensus 6 ~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~-~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd 84 (104)
+++|.|++++|+|.++|||++++||+|++.+ +.|+|+|++.... ..+...++++++..|.|.|+|.||.+++
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~-------~~~~~~~~~~e~~~g~f~r~i~LP~~v~ 73 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEE-------EKKGDDWHRVERSSGRFVRRFRLPENAD 73 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccc-------cccCCCEEEEEEeccEEEEEEECCCCCC
Confidence 4799999999999999999999999999986 5899999987654 3456789999999999999999999999
Q ss_pred cCceeEEEeCcEEEEEEeC
Q 043469 85 KDTISAEFLNGLLQIIIPK 103 (104)
Q Consensus 85 ~~~i~A~~~~GiL~I~~pK 103 (104)
.+.|+|+|+||+|+|++||
T Consensus 74 ~~~i~A~~~nGvL~I~lPK 92 (92)
T cd06472 74 ADEVKAFLENGVLTVTVPK 92 (92)
T ss_pred HHHCEEEEECCEEEEEecC
Confidence 9999999999999999998
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-28 Score=160.64 Aligned_cols=95 Identities=32% Similarity=0.576 Sum_probs=90.3
Q ss_pred ccceeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCC
Q 043469 3 WSPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTN 82 (104)
Q Consensus 3 ~~P~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~ 82 (104)
+.|+++|+++++.|+|+++|||++++||+|++.++.|+|+|++.... ..+...++++++..|.|+|+|.||..
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~-------~~~~~~~~~~e~~~~~f~r~~~Lp~~ 111 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEE-------EEEEEGYLRRERAYGEFERTFRLPEK 111 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccc-------cccCCceEEEEEEeeeEEEEEECccc
Confidence 78999999999999999999999999999999999999999998754 56778999999999999999999999
Q ss_pred cccCceeEEEeCcEEEEEEeCC
Q 043469 83 VDKDTISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 83 vd~~~i~A~~~~GiL~I~~pK~ 104 (104)
++++.++|+|+||+|+|+|||.
T Consensus 112 v~~~~~~A~~~nGvL~I~lpk~ 133 (146)
T COG0071 112 VDPEVIKAKYKNGLLTVTLPKA 133 (146)
T ss_pred ccccceeeEeeCcEEEEEEecc
Confidence 9999999999999999999994
No 3
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.96 E-value=1.9e-28 Score=148.40 Aligned_cols=93 Identities=30% Similarity=0.535 Sum_probs=84.7
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcc
Q 043469 5 PRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVD 84 (104)
Q Consensus 5 P~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd 84 (104)
|+++|.|++++|+|.++|||+++++|+|++.++.|+|+|++.....+ ......++++++..|.|+|+|.|| +++
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~-----~~~~~~~~~~e~~~g~f~r~~~lp-~v~ 74 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDE-----KDKKGNYIRRERYYGSFSRSFYLP-NVD 74 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccc-----ccccCCEEEEeeeccEEEEEEECC-CCC
Confidence 57999999999999999999999999999999999999999875421 234468999999999999999999 799
Q ss_pred cCceeEEEeCcEEEEEEeC
Q 043469 85 KDTISAEFLNGLLQIIIPK 103 (104)
Q Consensus 85 ~~~i~A~~~~GiL~I~~pK 103 (104)
.+.++|+|+||+|+|++||
T Consensus 75 ~~~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 75 EEEIKAKYENGVLKITLPK 93 (93)
T ss_pred HHHCEEEEECCEEEEEEcC
Confidence 9999999999999999998
No 4
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.96 E-value=4.5e-28 Score=156.77 Aligned_cols=92 Identities=22% Similarity=0.437 Sum_probs=83.4
Q ss_pred cccceeeEEEc-CCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECC
Q 043469 2 EWSPRMNVSEL-GSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLP 80 (104)
Q Consensus 2 ~~~P~~~i~e~-~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP 80 (104)
.+.|++||+|+ +++|+|+++|||++++||+|+++++.|+|+|++... .++.+++++|++.|.|+|+|.||
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~---------~~~~~~~~~Er~~g~F~R~f~LP 100 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQP---------EKEVKWLHQGLVNQPFSLSFTLA 100 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccc---------cCCCcEEEEEEeCcEEEEEEECC
Confidence 45699999985 779999999999999999999999999999997532 34578999999999999999999
Q ss_pred CCcccCceeEEEeCcEEEEEEeCC
Q 043469 81 TNVDKDTISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 81 ~~vd~~~i~A~~~~GiL~I~~pK~ 104 (104)
+++|.+ +|+|+||+|+|+|||.
T Consensus 101 ~~vd~~--~A~~~nGVL~I~lPK~ 122 (142)
T PRK11597 101 ENMEVS--GATFVNGLLHIDLIRN 122 (142)
T ss_pred CCcccC--cCEEcCCEEEEEEecc
Confidence 999998 7999999999999983
No 5
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.95 E-value=2e-27 Score=153.12 Aligned_cols=89 Identities=21% Similarity=0.396 Sum_probs=81.5
Q ss_pred ceeeEEE-cCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCc
Q 043469 5 PRMNVSE-LGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNV 83 (104)
Q Consensus 5 P~~~i~e-~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~v 83 (104)
|+++|.+ ++++|+|+++|||++++||+|++.++.|+|+|++... .+...++++|++.|.|+|+|.||++|
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~---------~~~~~~~~~Er~~g~F~R~~~LP~~V 105 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADE---------QKERTYLYQGIAERNFERKFQLAENI 105 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECcc---------ccCCcEEEEEEECCEEEEEEECCCCc
Confidence 8999995 8999999999999999999999999999999997543 24467999999999999999999999
Q ss_pred ccCceeEEEeCcEEEEEEeCC
Q 043469 84 DKDTISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 84 d~~~i~A~~~~GiL~I~~pK~ 104 (104)
|.+ +|+|+||+|+|++||.
T Consensus 106 d~~--~A~~~dGVL~I~lPK~ 124 (137)
T PRK10743 106 HVR--GANLVNGLLYIDLERV 124 (137)
T ss_pred ccC--cCEEeCCEEEEEEeCC
Confidence 999 5999999999999983
No 6
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.95 E-value=3.7e-27 Score=142.26 Aligned_cols=89 Identities=29% Similarity=0.525 Sum_probs=82.4
Q ss_pred ceeeEEEcC-CEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCc
Q 043469 5 PRMNVSELG-SNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNV 83 (104)
Q Consensus 5 P~~~i~e~~-~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~v 83 (104)
|+++|.+++ ++|+|.++|||+++++|+|++.++.|+|+|++.... .+..+++++++..|.|+|+|.||.++
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~--------~~~~~~~~~e~~~g~f~R~~~LP~~v 72 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEE--------NEEREYLHRGIAKRAFERSFNLADHV 72 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccc--------cCCCcEEEEEEeceEEEEEEECCCCc
Confidence 889999985 899999999999999999999999999999998764 25678999999999999999999999
Q ss_pred ccCceeEEEeCcEEEEEEeC
Q 043469 84 DKDTISAEFLNGLLQIIIPK 103 (104)
Q Consensus 84 d~~~i~A~~~~GiL~I~~pK 103 (104)
+.. +|+|+||+|+|+||+
T Consensus 73 d~~--~A~~~~GvL~I~l~~ 90 (90)
T cd06470 73 KVK--GAELENGLLTIDLER 90 (90)
T ss_pred eEC--eeEEeCCEEEEEEEC
Confidence 875 999999999999986
No 7
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.94 E-value=1e-25 Score=134.99 Aligned_cols=82 Identities=24% Similarity=0.432 Sum_probs=72.9
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCc
Q 043469 8 NVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDT 87 (104)
Q Consensus 8 ~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~ 87 (104)
+|.+++++|.|.++|||+++++|+|++.++.|+|+|++.... +...+.++ .|+|+|.||+++|.++
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~---------~~~~~~~~-----ef~R~~~LP~~Vd~~~ 69 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQ---------DDHGYISR-----EFHRRYRLPSNVDQSA 69 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccee---------CCCCEEEE-----EEEEEEECCCCCChHH
Confidence 689999999999999999999999999999999999864332 23456554 3999999999999999
Q ss_pred eeEEE-eCcEEEEEEeC
Q 043469 88 ISAEF-LNGLLQIIIPK 103 (104)
Q Consensus 88 i~A~~-~~GiL~I~~pK 103 (104)
|+|+| +||+|+|++||
T Consensus 70 i~A~~~~dGvL~I~~PK 86 (86)
T cd06497 70 ITCSLSADGMLTFSGPK 86 (86)
T ss_pred eEEEeCCCCEEEEEecC
Confidence 99999 89999999998
No 8
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.93 E-value=2.9e-25 Score=136.18 Aligned_cols=88 Identities=35% Similarity=0.604 Sum_probs=74.9
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCc
Q 043469 8 NVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDT 87 (104)
Q Consensus 8 ~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~ 87 (104)
||.+++++|.|.++|||+++++|+|++.++.|+|+|.+. . ...+..++.++++.+.|.|+|.||.++|.+.
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~-~--------~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~ 71 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRK-E--------EEEDDRYYRSERRYGSFERSIRLPEDVDPDK 71 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEE-G--------EECTTCEEEE-S-SEEEEEEEE-STTB-GGG
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceee-e--------eeeeeeeeecccccceEEEEEcCCCcCCcce
Confidence 689999999999999999999999999999999999999 2 2345677888899999999999999999999
Q ss_pred eeEEEeCcEEEEEEeCC
Q 043469 88 ISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 88 i~A~~~~GiL~I~~pK~ 104 (104)
|+|.|+||+|+|++||.
T Consensus 72 i~a~~~~GvL~I~~pk~ 88 (102)
T PF00011_consen 72 IKASYENGVLTITIPKK 88 (102)
T ss_dssp -EEEETTSEEEEEEEBS
T ss_pred EEEEecCCEEEEEEEcc
Confidence 99999999999999985
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.93 E-value=3.9e-25 Score=131.67 Aligned_cols=82 Identities=18% Similarity=0.350 Sum_probs=71.8
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCc
Q 043469 8 NVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDT 87 (104)
Q Consensus 8 ~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~ 87 (104)
++.+++++|.|.++|||+++++|+|++.++.|+|+|++.... +...++++ .|+|+|.||.++|.+.
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~---------~~~~~~~~-----ef~R~~~LP~~vd~~~ 66 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQ---------DEHGFISR-----EFHRRYRLPPGVDPAA 66 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEc---------CCCCEEEE-----EEEEEEECCCCcChHH
Confidence 478899999999999999999999999999999999875332 22345544 3999999999999999
Q ss_pred eeEEE-eCcEEEEEEeC
Q 043469 88 ISAEF-LNGLLQIIIPK 103 (104)
Q Consensus 88 i~A~~-~~GiL~I~~pK 103 (104)
|+|+| +||+|+|++||
T Consensus 67 i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 67 ITSSLSADGVLTISGPR 83 (83)
T ss_pred eEEEECCCCEEEEEecC
Confidence 99999 69999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.93 E-value=5.9e-25 Score=131.14 Aligned_cols=82 Identities=17% Similarity=0.353 Sum_probs=71.6
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCce
Q 043469 9 VSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDTI 88 (104)
Q Consensus 9 i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 88 (104)
+..++++|.|.++|||++++||+|++.++.|+|+|++.... +...++++ .|+|+|.||.++|.+.|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~---------~~~~~~~~-----eF~R~~~LP~~vd~~~i 67 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQ---------DEHGFISR-----EFQRKYRIPADVDPLTI 67 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEccee---------CCCCEEEE-----EEEEEEECCCCCChHHc
Confidence 67889999999999999999999999999999999865332 23445443 59999999999999999
Q ss_pred eEEEe-CcEEEEEEeCC
Q 043469 89 SAEFL-NGLLQIIIPKL 104 (104)
Q Consensus 89 ~A~~~-~GiL~I~~pK~ 104 (104)
+|+|+ ||+|+|++||+
T Consensus 68 ~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 68 TSSLSPDGVLTVCGPRK 84 (84)
T ss_pred EEEeCCCCEEEEEEeCC
Confidence 99995 99999999996
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.92 E-value=6.1e-25 Score=130.16 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=71.4
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCc
Q 043469 8 NVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDT 87 (104)
Q Consensus 8 ~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~ 87 (104)
+|.|++++|.|.++|||++++||+|++.++.|+|+|++.... + ...|.|+|+|.||.++|++.
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~-----------~------~~~g~F~R~~~LP~~vd~e~ 64 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASD-----------G------TVMNTFTHKCQLPEDVDPTS 64 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccC-----------C------CEEEEEEEEEECCCCcCHHH
Confidence 688999999999999999999999999999999999975321 1 14689999999999999999
Q ss_pred eeEEE-eCcEEEEEEeC
Q 043469 88 ISAEF-LNGLLQIIIPK 103 (104)
Q Consensus 88 i~A~~-~~GiL~I~~pK 103 (104)
|+|+| +||+|+|++++
T Consensus 65 v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 65 VSSSLGEDGTLTIKARR 81 (81)
T ss_pred eEEEecCCCEEEEEecC
Confidence 99997 99999999986
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.91 E-value=6.5e-24 Score=126.34 Aligned_cols=81 Identities=22% Similarity=0.378 Sum_probs=69.8
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCce
Q 043469 9 VSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDTI 88 (104)
Q Consensus 9 i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 88 (104)
+..++++|.|.++|||++++||+|++.++.|+|+|++.... +...+++ +.|+|+|.||.++|++.|
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~---------~~~~~~~-----~eF~R~~~LP~~vd~~~v 67 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRM---------DRHGFVS-----REFTRTYILPMDVDPLLV 67 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccee---------cCCCEEE-----EEEEEEEECCCCCChhhE
Confidence 45678899999999999999999999999999999985332 2233443 359999999999999999
Q ss_pred eEEEe-CcEEEEEEeC
Q 043469 89 SAEFL-NGLLQIIIPK 103 (104)
Q Consensus 89 ~A~~~-~GiL~I~~pK 103 (104)
+|+|. ||+|+|++||
T Consensus 68 ~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 68 RASLSHDGILCIQAPR 83 (83)
T ss_pred EEEecCCCEEEEEecC
Confidence 99995 9999999997
No 13
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.91 E-value=1.2e-23 Score=125.03 Aligned_cols=88 Identities=36% Similarity=0.580 Sum_probs=80.7
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCc
Q 043469 8 NVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDT 87 (104)
Q Consensus 8 ~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~ 87 (104)
++.+++++|+|.++|||+++++|+|++.++.|.|+|++..... ....+...++..+.|.|+|.||..+|.+.
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~--------~~~~~~~~~~~~~~f~r~~~LP~~vd~~~ 72 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEE--------EEENYLRRERSYGSFSRSFRLPEDVDPDK 72 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccc--------cCCcEEEEEEeCcEEEEEEECCCCcCHHH
Confidence 4788999999999999999999999999999999999997752 22277778889999999999999999999
Q ss_pred eeEEEeCcEEEEEEeC
Q 043469 88 ISAEFLNGLLQIIIPK 103 (104)
Q Consensus 88 i~A~~~~GiL~I~~pK 103 (104)
++|.|+||+|+|++||
T Consensus 73 i~a~~~~G~L~I~~pk 88 (88)
T cd06464 73 IKASLENGVLTITLPK 88 (88)
T ss_pred cEEEEeCCEEEEEEcC
Confidence 9999999999999998
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.91 E-value=7.4e-24 Score=127.14 Aligned_cols=83 Identities=22% Similarity=0.408 Sum_probs=71.9
Q ss_pred EcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCceeE
Q 043469 11 ELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDTISA 90 (104)
Q Consensus 11 e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A 90 (104)
+..++|.|.++|||+.++||+|++.++.|+|+|++.... ......+.+ ..|.|+|+|.||.+||.+.|+|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~-------~~~~~~~~~---~~~~F~R~~~LP~~Vd~~~i~A 73 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKN-------EDEKGSFSY---EYQEFVREAQLPEHVDPEAVTC 73 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeec-------ccCCCcEEE---EeeEEEEEEECCCCcChHHeEE
Confidence 457799999999999999999999999999999987654 223334432 4789999999999999999999
Q ss_pred EE-eCcEEEEEEeC
Q 043469 91 EF-LNGLLQIIIPK 103 (104)
Q Consensus 91 ~~-~~GiL~I~~pK 103 (104)
+| +||+|+|++|+
T Consensus 74 ~~~~dGvL~I~~P~ 87 (87)
T cd06481 74 SLSPSGHLHIRAPR 87 (87)
T ss_pred EeCCCceEEEEcCC
Confidence 99 99999999996
No 15
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.91 E-value=1.2e-23 Score=125.99 Aligned_cols=82 Identities=15% Similarity=0.375 Sum_probs=71.8
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccC
Q 043469 7 MNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKD 86 (104)
Q Consensus 7 ~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~ 86 (104)
-+|+|++++|.|.++|||+++++|+|++.++.|+|+|++.... +...+. .+.|+|+|.||..+|.+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~---------~~~~~~-----~~~f~R~f~LP~~vd~~ 68 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQ---------DEHGFV-----SRCFTRKYTLPPGVDPT 68 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCc---------CCCCEE-----EEEEEEEEECCCCCCHH
Confidence 4799999999999999999999999999999999999985432 122232 34899999999999999
Q ss_pred ceeEEEe-CcEEEEEEe
Q 043469 87 TISAEFL-NGLLQIIIP 102 (104)
Q Consensus 87 ~i~A~~~-~GiL~I~~p 102 (104)
+++|+|+ ||+|+|++|
T Consensus 69 ~v~A~~~~dGvL~I~lP 85 (86)
T cd06475 69 AVTSSLSPDGILTVEAP 85 (86)
T ss_pred HcEEEECCCCeEEEEec
Confidence 9999997 999999998
No 16
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.89 E-value=4.7e-23 Score=122.55 Aligned_cols=78 Identities=27% Similarity=0.518 Sum_probs=68.4
Q ss_pred cCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCceeEE
Q 043469 12 LGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDTISAE 91 (104)
Q Consensus 12 ~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~ 91 (104)
.+++|.|.++||||+++||+|++.++.|+|+|++.... . ... +..+.|.|+|.||.++|.+.++|+
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~-------~--~~~-----~~~~~f~r~~~LP~~vd~~~i~A~ 70 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEERE-------D--EHG-----YVSREFTRRYQLPEGVDPDSVTSS 70 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeec-------c--CCC-----EEEEEEEEEEECCCCCChHHeEEE
Confidence 34699999999999999999999999999999987653 1 112 245789999999999999999999
Q ss_pred EeC-cEEEEEEeC
Q 043469 92 FLN-GLLQIIIPK 103 (104)
Q Consensus 92 ~~~-GiL~I~~pK 103 (104)
|.| |+|+|++||
T Consensus 71 ~~~~GvL~I~~Pk 83 (83)
T cd06526 71 LSSDGVLTIEAPK 83 (83)
T ss_pred eCCCcEEEEEecC
Confidence 998 999999998
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.89 E-value=1e-22 Score=121.99 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=69.4
Q ss_pred cCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCceeEE
Q 043469 12 LGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDTISAE 91 (104)
Q Consensus 12 ~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~ 91 (104)
+++.|+|.++|||++++||+|++.++.|+|+|++..... ... ..+++.|.|+|+|.||.+||.++|+|+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e-------~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~ 74 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYD-------CLG----SKKYSYMNICKEFSLPPGVDEKDVTYS 74 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccc-------cCC----ccEEEEEEEEEEEECCCCcChHHcEEE
Confidence 567999999999999999999999999999999976541 111 136689999999999999999999999
Q ss_pred EeCc-EEEEEEe
Q 043469 92 FLNG-LLQIIIP 102 (104)
Q Consensus 92 ~~~G-iL~I~~p 102 (104)
|+|| +|+|.-|
T Consensus 75 ~~~~~~l~i~~~ 86 (87)
T cd06482 75 YGLGSVVKIETP 86 (87)
T ss_pred EcCCCEEEEeeC
Confidence 9866 9999877
No 18
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.89 E-value=2.6e-22 Score=119.38 Aligned_cols=79 Identities=16% Similarity=0.305 Sum_probs=68.2
Q ss_pred EEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCcee
Q 043469 10 SELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDTIS 89 (104)
Q Consensus 10 ~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~ 89 (104)
.+++++|.|+++|||++++||+|++.++.|+|+|++.... +..++. .+.|+|+|.||.+|+.+.|+
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~---------~~~~~~-----~r~F~R~~~LP~~Vd~~~v~ 68 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRM---------DEHGFI-----SRSFTRQYQLPDGVEHKDLS 68 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcccc---------CCCCEE-----EEEEEEEEECCCCcchheEE
Confidence 3678899999999999999999999999999999986643 113332 23899999999999999999
Q ss_pred EEE-eCcEEEEEEe
Q 043469 90 AEF-LNGLLQIIIP 102 (104)
Q Consensus 90 A~~-~~GiL~I~~p 102 (104)
|+| +||+|+|..|
T Consensus 69 A~~~~dGvL~I~~~ 82 (83)
T cd06477 69 AMLCHDGILVVETK 82 (83)
T ss_pred EEEcCCCEEEEEec
Confidence 998 8999999876
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.81 E-value=2.7e-19 Score=107.95 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=71.1
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCc
Q 043469 8 NVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDT 87 (104)
Q Consensus 8 ~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~ 87 (104)
-+..++++|.|.+++.||+++||+|++.++.|+|+|++.... +...+. .+.|.|+|.||.++|.+.
T Consensus 9 ~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~---------~e~g~~-----~r~F~R~~~LP~~Vd~~~ 74 (91)
T cd06480 9 PPPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQ---------KEGGIV-----SKNFTKKIQLPPEVDPVT 74 (91)
T ss_pred CCCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECccc---------CCCCEE-----EEEEEEEEECCCCCCchh
Confidence 455678899999999999999999999999999999988653 112333 378999999999999999
Q ss_pred eeEEEe-CcEEEEEEeC
Q 043469 88 ISAEFL-NGLLQIIIPK 103 (104)
Q Consensus 88 i~A~~~-~GiL~I~~pK 103 (104)
|+|.+. ||+|+|.+|.
T Consensus 75 v~s~l~~dGvL~IeaP~ 91 (91)
T cd06480 75 VFASLSPEGLLIIEAPQ 91 (91)
T ss_pred EEEEeCCCCeEEEEcCC
Confidence 999997 9999999983
No 20
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.1e-19 Score=121.13 Aligned_cols=98 Identities=35% Similarity=0.507 Sum_probs=88.6
Q ss_pred cccceeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCC-EEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECC
Q 043469 2 EWSPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDR-KLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLP 80 (104)
Q Consensus 2 ~~~P~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~-~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP 80 (104)
.|.+++++.+..+.|++.+++||+.++++.|++.+. .|+|+|++.....+ ......+...++..|.|.|.+.||
T Consensus 82 ~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~-----~~~~~~~~~~E~~~g~F~r~~~lP 156 (196)
T KOG0710|consen 82 EARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEE-----SGSGKKWKRVERKLGKFKRRFELP 156 (196)
T ss_pred cccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEeccccccccc-----ccCCccceeehhcccceEeeecCC
Confidence 367889999999999999999999999999999776 79999999988742 235677788899999999999999
Q ss_pred CCcccCceeEEEeCcEEEEEEeCC
Q 043469 81 TNVDKDTISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 81 ~~vd~~~i~A~~~~GiL~I~~pK~ 104 (104)
++++.+.|+|.|+||+|+|.+||+
T Consensus 157 env~~d~ikA~~~nGVL~VvvpK~ 180 (196)
T KOG0710|consen 157 ENVDVDEIKAEMENGVLTVVVPKL 180 (196)
T ss_pred ccccHHHHHHHhhCCeEEEEEecc
Confidence 999999999999999999999995
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.72 E-value=8.7e-17 Score=92.52 Aligned_cols=80 Identities=36% Similarity=0.582 Sum_probs=71.6
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCce
Q 043469 9 VSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDTI 88 (104)
Q Consensus 9 i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 88 (104)
|.++++.|.|++++||+.++++.|.+.++.|.|+|...... . .+...+.|.+.+.||..++++.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~-------~--------~~~~~~~~~~~~~L~~~i~~~~~ 65 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEE-------E--------RERSYGEFERSFELPEDVDPEKS 65 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCC-------c--------ceEeeeeEEEEEECCCCcCHHHC
Confidence 46888999999999999999999999999999999887553 1 33356789999999999999999
Q ss_pred eEEEeCcEEEEEEeC
Q 043469 89 SAEFLNGLLQIIIPK 103 (104)
Q Consensus 89 ~A~~~~GiL~I~~pK 103 (104)
+|.+.+|+|+|.+||
T Consensus 66 ~~~~~~~~l~i~l~K 80 (80)
T cd00298 66 KASLENGVLEITLPK 80 (80)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 22
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.6e-15 Score=98.16 Aligned_cols=85 Identities=20% Similarity=0.406 Sum_probs=74.9
Q ss_pred eeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCccc
Q 043469 6 RMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDK 85 (104)
Q Consensus 6 ~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~ 85 (104)
..++..+.++|.|.+|+..|.+++|.|.+.++.|.|.|+..... ++..+.. +.|.|+|.||.++|+
T Consensus 64 ~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~---------d~~G~v~-----R~F~R~y~LP~~vdp 129 (173)
T KOG3591|consen 64 ASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKE---------DEHGYVS-----RSFVRKYLLPEDVDP 129 (173)
T ss_pred ccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeecccc---------CCCCeEE-----EEEEEEecCCCCCCh
Confidence 45778889999999999999999999999999999999998764 3345543 479999999999999
Q ss_pred CceeEEE-eCcEEEEEEeCC
Q 043469 86 DTISAEF-LNGLLQIIIPKL 104 (104)
Q Consensus 86 ~~i~A~~-~~GiL~I~~pK~ 104 (104)
..|++.+ .||+|+|..||.
T Consensus 130 ~~V~S~LS~dGvLtI~ap~~ 149 (173)
T KOG3591|consen 130 TSVTSTLSSDGVLTIEAPKP 149 (173)
T ss_pred hheEEeeCCCceEEEEccCC
Confidence 9999999 599999999984
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.52 E-value=2e-13 Score=79.64 Aligned_cols=69 Identities=25% Similarity=0.346 Sum_probs=63.3
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCce
Q 043469 9 VSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDTI 88 (104)
Q Consensus 9 i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 88 (104)
|.++++.+.|++.+||+.+++++|++.++.|.|++ ..|.+.+.||..++++..
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~---------------------------~~~~~~~~l~~~I~~e~~ 53 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF---------------------------PPYLFELDLAAPIDDEKS 53 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC---------------------------CCEEEEEeCccccccccc
Confidence 46889999999999999999999999999999975 137888999999999999
Q ss_pred eEEEeCcEEEEEEeCC
Q 043469 89 SAEFLNGLLQIIIPKL 104 (104)
Q Consensus 89 ~A~~~~GiL~I~~pK~ 104 (104)
+|++.+|.|.|+|||+
T Consensus 54 ~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 54 SAKIGNGVLVFTLVKK 69 (78)
T ss_pred EEEEeCCEEEEEEEeC
Confidence 9999999999999995
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.32 E-value=3.7e-11 Score=70.08 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=65.2
Q ss_pred EEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCce
Q 043469 9 VSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDTI 88 (104)
Q Consensus 9 i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i 88 (104)
+.++++.+.|.+.+||..+++++|.+.++.|.|++.... .+.|...+.|+..|+++..
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~----------------------~~~~~~~~~L~~~I~~~~s 58 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGG----------------------GKEYLLEGELFGPIDPEES 58 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCC----------------------CCceEEeeEccCccchhhc
Confidence 467899999999999999999999999999999976431 1347778899999999999
Q ss_pred eEEEeCcEEEEEEeCC
Q 043469 89 SAEFLNGLLQIIIPKL 104 (104)
Q Consensus 89 ~A~~~~GiL~I~~pK~ 104 (104)
++++.+|.|.|+|+|+
T Consensus 59 ~~~~~~~~l~i~L~K~ 74 (84)
T cd06463 59 KWTVEDRKIEITLKKK 74 (84)
T ss_pred EEEEeCCEEEEEEEEC
Confidence 9999999999999985
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.23 E-value=2.1e-10 Score=76.29 Aligned_cols=74 Identities=36% Similarity=0.516 Sum_probs=58.8
Q ss_pred ccceeeEEEcCC-EEEEEEEcCCCCCCC-eEEEEeC--CEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEE
Q 043469 3 WSPRMNVSELGS-NYVMTVEIPGVHVND-IRVEVDD--RKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWT 78 (104)
Q Consensus 3 ~~P~~~i~e~~~-~~~i~v~lPG~~~~d-i~V~v~~--~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~ 78 (104)
..+.+++.+.++ .++|.++|||+++++ |+|.+.. +.|+|. . .+.+.+++.
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~--~------------------------~~~~~krv~ 143 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIR--V------------------------GEKYLKRVA 143 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEe--c------------------------CCceEeeEe
Confidence 357789998888 699999999999888 9999975 455554 2 123456789
Q ss_pred CCCCcccCceeEEEeCcEEEEEEeC
Q 043469 79 LPTNVDKDTISAEFLNGLLQIIIPK 103 (104)
Q Consensus 79 lP~~vd~~~i~A~~~~GiL~I~~pK 103 (104)
||.. +++.++|.|+||||+|++-|
T Consensus 144 L~~~-~~e~~~~t~nNgILEIri~~ 167 (177)
T PF05455_consen 144 LPWP-DPEITSATFNNGILEIRIRR 167 (177)
T ss_pred cCCC-ccceeeEEEeCceEEEEEee
Confidence 9966 68889999999999999865
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.10 E-value=8.5e-10 Score=64.91 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=65.5
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCc
Q 043469 8 NVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDT 87 (104)
Q Consensus 8 ~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~ 87 (104)
+++++++.+.|.+.+||+.++++.|.+.++.|.|++.... .+.|...+.|+..|+++.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~----------------------~~~~~~~~~L~~~I~~~~ 58 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPG----------------------GSEYQLELDLFGPIDPEQ 58 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCC----------------------CCeEEEecccccccCchh
Confidence 5789999999999999999999999999999999865420 124677889999999999
Q ss_pred eeEEEeCcEEEEEEeCC
Q 043469 88 ISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 88 i~A~~~~GiL~I~~pK~ 104 (104)
.++.+.+|.|.|+|.|.
T Consensus 59 s~~~~~~~~vei~L~K~ 75 (84)
T cd06466 59 SKVSVLPTKVEITLKKA 75 (84)
T ss_pred cEEEEeCeEEEEEEEcC
Confidence 99999999999999985
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.03 E-value=1.8e-08 Score=58.08 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=64.4
Q ss_pred ceeeEEEcCCEEEEEEEcCCC--CCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCC
Q 043469 5 PRMNVSELGSNYVMTVEIPGV--HVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTN 82 (104)
Q Consensus 5 P~~~i~e~~~~~~i~v~lPG~--~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~ 82 (104)
|+++|.++++...|.+.+++. .++++.|.+.++.|.++...... ..|...+.|...
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~----------------------~~~~~~~~L~~~ 58 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG----------------------KEYLLEGELFGE 58 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS----------------------CEEEEEEEBSS-
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC----------------------ceEEEEEEEeee
Confidence 789999999999999999665 59999999999999999554321 135667889999
Q ss_pred cccCceeEEEeCcEEEEEEeC
Q 043469 83 VDKDTISAEFLNGLLQIIIPK 103 (104)
Q Consensus 83 vd~~~i~A~~~~GiL~I~~pK 103 (104)
|+++..++.+.++.|.|+|.|
T Consensus 59 I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 59 IDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp BECCCEEEEEETTEEEEEEEB
T ss_pred EcchhcEEEEECCEEEEEEEC
Confidence 999999999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.75 E-value=2.7e-07 Score=56.96 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=66.0
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcc
Q 043469 5 PRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVD 84 (104)
Q Consensus 5 P~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd 84 (104)
|+++++++.+...|.+.+||. +++.|.+..+.|.|++..... ...|...+.|...|+
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~---------------------~~~y~~~~~L~~~I~ 57 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGG---------------------GKKYEFDLEFYKEID 57 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCC---------------------CeeEEEEeEhhhhcc
Confidence 789999999999999999998 889999999999999743211 123566779999999
Q ss_pred cCceeEEEeCcEEEEEEeCC
Q 043469 85 KDTISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 85 ~~~i~A~~~~GiL~I~~pK~ 104 (104)
++..+.++.++.|.|+|.|+
T Consensus 58 pe~s~~~v~~~kveI~L~K~ 77 (108)
T cd06465 58 PEESKYKVTGRQIEFVLRKK 77 (108)
T ss_pred ccccEEEecCCeEEEEEEEC
Confidence 99999999999999999884
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.61 E-value=4.2e-07 Score=65.52 Aligned_cols=65 Identities=29% Similarity=0.565 Sum_probs=56.9
Q ss_pred CCEEEEEEEcCCC-CCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCceeEE
Q 043469 13 GSNYVMTVEIPGV-HVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDTISAE 91 (104)
Q Consensus 13 ~~~~~i~v~lPG~-~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~ 91 (104)
.+.++|++.|||+ +..+|++++.+..|.|..... .|.-.+.||..|+.+..+|.
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~-------------------------~y~L~l~LP~~V~~~~~~Ak 314 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP-------------------------KYRLDLPLPYPVDEDNGKAK 314 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC-------------------------ceEEEccCCCcccCCCceEE
Confidence 5799999999998 889999999999999973221 36667999999999999999
Q ss_pred Ee--CcEEEEEEe
Q 043469 92 FL--NGLLQIIIP 102 (104)
Q Consensus 92 ~~--~GiL~I~~p 102 (104)
|. .++|+|+||
T Consensus 315 f~~~~~~L~vtlp 327 (328)
T PF08190_consen 315 FDKKTKTLTVTLP 327 (328)
T ss_pred EccCCCEEEEEEE
Confidence 94 799999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.57 E-value=1e-06 Score=51.98 Aligned_cols=75 Identities=23% Similarity=0.311 Sum_probs=63.6
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCc
Q 043469 8 NVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDT 87 (104)
Q Consensus 8 ~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~ 87 (104)
||+++++...|++.++|+.++++.|.+.++.|.+++..... ..|.-.+.|...|+++.
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~----------------------~~y~~~~~L~~~I~p~~ 58 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSG----------------------NDYSLKLHLLHPIVPEQ 58 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCC----------------------CcEEEeeecCceecchh
Confidence 57899999999999999999999999999999998754211 13555678999999998
Q ss_pred eeEEEeCcEEEEEEeCC
Q 043469 88 ISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 88 i~A~~~~GiL~I~~pK~ 104 (104)
.+.....+.+.|.|.|+
T Consensus 59 s~~~v~~~kiei~L~K~ 75 (84)
T cd06489 59 SSYKILSTKIEIKLKKT 75 (84)
T ss_pred cEEEEeCcEEEEEEEcC
Confidence 88888899999999985
No 31
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=98.43 E-value=8e-06 Score=48.79 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=62.8
Q ss_pred eeeEEEcCCEEEEEEEcCCCCC---CCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEE-CCC
Q 043469 6 RMNVSELGSNYVMTVEIPGVHV---NDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWT-LPT 81 (104)
Q Consensus 6 ~~~i~e~~~~~~i~v~lPG~~~---~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~-lP~ 81 (104)
.+++.++++...|.+.+|+... +++.|.+.++.|.|++..... ..|.-.+. |-.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~----------------------~~~~~~~~~L~~ 60 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNG----------------------KNYRFTINRLLK 60 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCC----------------------cEEEEEehHhhC
Confidence 4789999999999999999876 999999999999998743111 12333443 889
Q ss_pred CcccCceeEEEeCcEEEEEEeCC
Q 043469 82 NVDKDTISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 82 ~vd~~~i~A~~~~GiL~I~~pK~ 104 (104)
.|+++..+.....+-+.|+|.|+
T Consensus 61 ~I~~e~s~~~~~~~ki~i~L~K~ 83 (92)
T cd06468 61 KIDPEKSSFKVKTDRIVITLAKK 83 (92)
T ss_pred ccCccccEEEEeCCEEEEEEEeC
Confidence 99999999999999999999885
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=98.40 E-value=8.9e-06 Score=48.41 Aligned_cols=77 Identities=21% Similarity=0.204 Sum_probs=65.1
Q ss_pred eeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCccc
Q 043469 6 RMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDK 85 (104)
Q Consensus 6 ~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~ 85 (104)
+++|+++++...|.+.+.|+.++++.+.++++.|.++...... ..|.-.+.|-..|++
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~----------------------~~y~~~l~L~~~I~~ 59 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGN----------------------KEFQLDIELWGVIDV 59 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCC----------------------ceEEEEeeccceECh
Confidence 5799999999999999999999999999999998887543211 136667889999999
Q ss_pred CceeEEEeCcEEEEEEeCC
Q 043469 86 DTISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 86 ~~i~A~~~~GiL~I~~pK~ 104 (104)
+..+.....+.+.|+|.|+
T Consensus 60 ~~s~~~v~~~kvei~L~K~ 78 (87)
T cd06488 60 EKSSVNMLPTKVEIKLRKA 78 (87)
T ss_pred hHcEEEecCcEEEEEEEeC
Confidence 9988888899999999885
No 33
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.38 E-value=5.6e-06 Score=48.63 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=59.6
Q ss_pred eeEEEcCCEEEEEEEcC-CCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCccc
Q 043469 7 MNVSELGSNYVMTVEIP-GVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDK 85 (104)
Q Consensus 7 ~~i~e~~~~~~i~v~lP-G~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~ 85 (104)
+.+.++++...|++.+| ++.++++.|.+.++.|.|+.... .+.-...|...|++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~-------------------------~~~l~~~L~~~I~~ 55 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGG-------------------------EPLLDGELYAKVKV 55 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCC-------------------------CceEcCcccCceeE
Confidence 46889999999999997 68999999999999999985320 01112368899999
Q ss_pred CceeEEEeC-cEEEEEEeCC
Q 043469 86 DTISAEFLN-GLLQIIIPKL 104 (104)
Q Consensus 86 ~~i~A~~~~-GiL~I~~pK~ 104 (104)
+..+..+.+ ..|.|+|+|+
T Consensus 56 ~~s~w~~~~~~~v~i~L~K~ 75 (85)
T cd06467 56 DESTWTLEDGKLLEITLEKR 75 (85)
T ss_pred cCCEEEEeCCCEEEEEEEEC
Confidence 988888999 9999999985
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=98.20 E-value=2.8e-05 Score=46.02 Aligned_cols=73 Identities=15% Similarity=0.279 Sum_probs=58.3
Q ss_pred eeEEEcCCEEEEEEEcC-CCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCccc
Q 043469 7 MNVSELGSNYVMTVEIP-GVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDK 85 (104)
Q Consensus 7 ~~i~e~~~~~~i~v~lP-G~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~ 85 (104)
++++++.+...|.+.+| |+.++|++|++..+.|.+... ... .+ ..-.|...|++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~--~~~----------------------~~-~~g~L~~~I~~ 55 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK--DQA----------------------PL-LEGKLYSSIDH 55 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC--CCC----------------------eE-EeCcccCcccc
Confidence 46889999999999996 999999999999999999642 000 01 12368899999
Q ss_pred CceeEEEeCc-EEEEEEeCC
Q 043469 86 DTISAEFLNG-LLQIIIPKL 104 (104)
Q Consensus 86 ~~i~A~~~~G-iL~I~~pK~ 104 (104)
+.-+-.+++| .|.|+|.|+
T Consensus 56 d~Stw~i~~~~~l~i~L~K~ 75 (85)
T cd06493 56 ESSTWIIKENKSLEVSLIKK 75 (85)
T ss_pred cCcEEEEeCCCEEEEEEEEC
Confidence 9888888777 699999885
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=98.12 E-value=6e-05 Score=45.60 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=60.4
Q ss_pred ceeeEEEcCCEEEEEEEcC-CCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCc
Q 043469 5 PRMNVSELGSNYVMTVEIP-GVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNV 83 (104)
Q Consensus 5 P~~~i~e~~~~~~i~v~lP-G~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~v 83 (104)
+.+.++++.+...|++.+| |...+|+.|.+..+.|.|...... . -.| .|...|
T Consensus 6 ~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~---------------~-----l~G------~L~~~I 59 (93)
T cd06494 6 PWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQE---------------V-----LKG------KLFDSV 59 (93)
T ss_pred CCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEE---------------E-----EcC------cccCcc
Confidence 5689999999999999997 899999999999999999742111 0 112 578899
Q ss_pred ccCceeEEEeCcE-EEEEEeCC
Q 043469 84 DKDTISAEFLNGL-LQIIIPKL 104 (104)
Q Consensus 84 d~~~i~A~~~~Gi-L~I~~pK~ 104 (104)
+++.-.-++++|- |.|.|.|.
T Consensus 60 ~~destWtled~k~l~I~L~K~ 81 (93)
T cd06494 60 VADECTWTLEDRKLIRIVLTKS 81 (93)
T ss_pred CcccCEEEEECCcEEEEEEEeC
Confidence 9998888898876 89999984
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=98.07 E-value=0.00015 Score=44.78 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=59.9
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcc
Q 043469 5 PRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVD 84 (104)
Q Consensus 5 P~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd 84 (104)
|++.+.++.+...|++.+|+ .+++.|.++++.|.++|... .. . .|.-.+.|=..|+
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~-~g-----------~----------~y~~~l~l~~~I~ 57 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG-DN-----------V----------KIYNEIELYDRVD 57 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC-CC-----------c----------EEEEEEEeecccC
Confidence 78999999999999999998 68999999999999998332 10 0 1334567778889
Q ss_pred cCceeEEEeCcEEEEEEeCC
Q 043469 85 KDTISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 85 ~~~i~A~~~~GiL~I~~pK~ 104 (104)
++..+.....-.+.|.+.|+
T Consensus 58 pe~Sk~~v~~r~ve~~L~K~ 77 (106)
T cd00237 58 PNDSKHKRTDRSILCCLRKG 77 (106)
T ss_pred cccCeEEeCCceEEEEEEeC
Confidence 98777777777788888774
No 37
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=97.82 E-value=0.00012 Score=49.16 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=62.0
Q ss_pred cceeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCc
Q 043469 4 SPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNV 83 (104)
Q Consensus 4 ~P~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~v 83 (104)
.+++|++++.+..+|++-.+++.++|++|++..+.|.+..+..... .|.-...|-.+|
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~----------------------~~~l~~~L~~~I 60 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGS----------------------EYNLQLKLYHEI 60 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCch----------------------hhhhhHHhcccc
Confidence 4678999999999999999999999999999999999986665222 233334566777
Q ss_pred ccCceeEEEeCcEEEEEEeCC
Q 043469 84 DKDTISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 84 d~~~i~A~~~~GiL~I~~pK~ 104 (104)
.++..+-..----++|+|+|.
T Consensus 61 ~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 61 IPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred cccceeeEeeeeeEEEEeccc
Confidence 788766666677788888773
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.77 E-value=0.00027 Score=51.95 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=64.7
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcc
Q 043469 5 PRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVD 84 (104)
Q Consensus 5 P~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd 84 (104)
+.++|+++++..+|.+-+.|+.++++.|.+.++.|.|+...... ..|...+.|-..|+
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~----------------------~~y~~~~~L~~~I~ 214 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGE----------------------DAYHLQPRLFGKII 214 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCC----------------------cceeeccccccccc
Confidence 56889999999999999999999999999999999998643211 13555677889999
Q ss_pred cCceeEEEeCcEEEEEEeCC
Q 043469 85 KDTISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 85 ~~~i~A~~~~GiL~I~~pK~ 104 (104)
++..+....-.-+.|+|.|+
T Consensus 215 p~~s~~~v~~~Kiei~l~K~ 234 (356)
T PLN03088 215 PDKCKYEVLSTKIEIRLAKA 234 (356)
T ss_pred ccccEEEEecceEEEEEecC
Confidence 99888888877999999874
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=97.38 E-value=0.0073 Score=35.85 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=54.3
Q ss_pred eeEEEcCCEEEEEEEcCC--CCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcc
Q 043469 7 MNVSELGSNYVMTVEIPG--VHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVD 84 (104)
Q Consensus 7 ~~i~e~~~~~~i~v~lPG--~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd 84 (104)
+||+++++..+|.+-..+ ..+.++.+....+.|.|+-... . ..|...+.|=..++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~----------------------~~~~~~~~L~~~I~ 57 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-D----------------------KSYLLHLDLSNEVQ 57 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-C----------------------ceEEEeeeccccCC
Confidence 489999999999999885 5555666666777888875432 1 12566678888888
Q ss_pred cCceeEEEe--CcEEEEEEeCC
Q 043469 85 KDTISAEFL--NGLLQIIIPKL 104 (104)
Q Consensus 85 ~~~i~A~~~--~GiL~I~~pK~ 104 (104)
++. +.++. -|-++|+|.|+
T Consensus 58 ~~~-~~~~~~~~~KVEI~L~K~ 78 (87)
T cd06490 58 WPC-EVRISTETGKIELVLKKK 78 (87)
T ss_pred CCc-EEEEcccCceEEEEEEcC
Confidence 775 55554 78999999985
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=97.24 E-value=0.005 Score=36.62 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=55.4
Q ss_pred eEEEcCCEEEEEEEcC-C--CCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcc
Q 043469 8 NVSELGSNYVMTVEIP-G--VHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVD 84 (104)
Q Consensus 8 ~i~e~~~~~~i~v~lP-G--~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd 84 (104)
.+.++.+...|++.+| | ....++.|.++.+.|.+........ + .=.|...|+
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~-----------------------i--~G~L~~~V~ 56 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPI-----------------------I--DGELYNEVK 56 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceE-----------------------E--eCcccCccc
Confidence 4678889999999996 3 8899999999999999964221110 1 125788899
Q ss_pred cCceeEEEeCc-EEEEEEeCC
Q 043469 85 KDTISAEFLNG-LLQIIIPKL 104 (104)
Q Consensus 85 ~~~i~A~~~~G-iL~I~~pK~ 104 (104)
++.-.-.+++| .|.|+|-|+
T Consensus 57 ~des~Wtled~~~l~i~L~K~ 77 (87)
T cd06492 57 VEESSWLIEDGKVVTVNLEKI 77 (87)
T ss_pred ccccEEEEeCCCEEEEEEEEC
Confidence 99888889886 799999774
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.20 E-value=0.011 Score=36.26 Aligned_cols=79 Identities=10% Similarity=0.155 Sum_probs=59.4
Q ss_pred cceeeEEEcCCEEEEEEEcC-C-CCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCC
Q 043469 4 SPRMNVSELGSNYVMTVEIP-G-VHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPT 81 (104)
Q Consensus 4 ~P~~~i~e~~~~~~i~v~lP-G-~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~ 81 (104)
.+.+.+.++-+...|.+.+| | .+.+++.|.++...|.|.-+..... ..+. .| .|+.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~-----------~~~i-----~G------~L~~ 61 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGE-----------KVLM-----EG------EFTH 61 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCC-----------ceEE-----eC------cccC
Confidence 35788999999999999998 5 4679999999999999985421000 0010 12 5888
Q ss_pred CcccCceeEEEeCcE-EEEEEeCC
Q 043469 82 NVDKDTISAEFLNGL-LQIIIPKL 104 (104)
Q Consensus 82 ~vd~~~i~A~~~~Gi-L~I~~pK~ 104 (104)
.|+.+.-.-.++||- |.|+|-|.
T Consensus 62 ~V~~des~Wtled~~~l~I~L~K~ 85 (102)
T cd06495 62 KINTENSLWSLEPGKCVLLSLSKC 85 (102)
T ss_pred cccCccceEEEeCCCEEEEEEEEC
Confidence 999998888898865 89998774
No 42
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=93.07 E-value=0.92 Score=30.51 Aligned_cols=74 Identities=15% Similarity=0.266 Sum_probs=56.2
Q ss_pred ceeeEEEcCCEEEEEEEcC-CC-CCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCC
Q 043469 5 PRMNVSELGSNYVMTVEIP-GV-HVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTN 82 (104)
Q Consensus 5 P~~~i~e~~~~~~i~v~lP-G~-~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~ 82 (104)
+.+.|.++=....|.+.+| |+ +..+|.+.+....|.|.-+..+..- -| .|...
T Consensus 19 ~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~il-------------------dG------~L~~~ 73 (179)
T KOG2265|consen 19 EKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPIL-------------------DG------ELSHS 73 (179)
T ss_pred cceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCcee-------------------cC------ccccc
Confidence 4567788878888898885 77 8899999999999999754443221 12 57778
Q ss_pred cccCceeEEEeCcEEEEEEeC
Q 043469 83 VDKDTISAEFLNGLLQIIIPK 103 (104)
Q Consensus 83 vd~~~i~A~~~~GiL~I~~pK 103 (104)
|..+...-.+++|.+.|.+-|
T Consensus 74 vk~des~WtiEd~k~i~i~l~ 94 (179)
T KOG2265|consen 74 VKVDESTWTIEDGKMIVILLK 94 (179)
T ss_pred cccccceEEecCCEEEEEEee
Confidence 888888889999988777654
No 43
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.72 Score=30.99 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=53.7
Q ss_pred cceeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCc
Q 043469 4 SPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNV 83 (104)
Q Consensus 4 ~P~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~v 83 (104)
.|.+.|.++.+-..+++.++- ..+..|.++...|+++|+..... -.|...|.|=..|
T Consensus 7 ~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~~l~fs~k~~~d~---------------------~~~~~~ief~~eI 63 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVED--AKDVHVNLEPSKLTFSCKSGADN---------------------HKYENEIEFFDEI 63 (180)
T ss_pred CCcchhhhhcCeEEEEEEecc--CccceeeccccEEEEEeccCCCc---------------------eeeEEeeehhhhc
Confidence 578999999999999999986 45667777788999998875321 1244456777788
Q ss_pred ccCceeEEEeCcEEEEEEeC
Q 043469 84 DKDTISAEFLNGLLQIIIPK 103 (104)
Q Consensus 84 d~~~i~A~~~~GiL~I~~pK 103 (104)
|++..+-+-. +....++++
T Consensus 64 dpe~sk~k~~-~r~if~i~~ 82 (180)
T KOG3158|consen 64 DPEKSKHKRT-SRSIFCILR 82 (180)
T ss_pred CHhhcccccc-ceEEEEEEE
Confidence 8887665554 545444443
No 44
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=89.90 E-value=3.7 Score=26.32 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=47.9
Q ss_pred eeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCccc
Q 043469 6 RMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDK 85 (104)
Q Consensus 6 ~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~ 85 (104)
.+.|...++ ..+++.. ..+.++++.+++.|.|+.+..... -...+..... ...-+-.+.||.....
T Consensus 67 ~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~~L~I~~~~~~~~---------~~~~~~~~~~-~~~~~i~I~lP~~~~l 132 (166)
T PF13349_consen 67 DVEIKPSDD-DKIKVEY---NGKKPEISVEGGTLTIKSKDRESF---------FFKGFNFNNS-DNKSKITIYLPKDYKL 132 (166)
T ss_pred eEEEEEcCC-ccEEEEE---cCcEEEEEEcCCEEEEEEeccccc---------ccceEEEccc-CCCcEEEEEECCCCce
Confidence 345555444 3334444 212688888899999986622111 0111111111 2345557899999988
Q ss_pred CceeEEEeCcEEEEE
Q 043469 86 DTISAEFLNGLLQII 100 (104)
Q Consensus 86 ~~i~A~~~~GiL~I~ 100 (104)
++++....+|-+.+.
T Consensus 133 ~~i~i~~~~G~i~i~ 147 (166)
T PF13349_consen 133 DKIDIKTSSGDITIE 147 (166)
T ss_pred eEEEEEeccccEEEE
Confidence 899988888887764
No 45
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=88.36 E-value=2.4 Score=25.69 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=31.4
Q ss_pred cceeeEEEcCCEEEEEEEcCCC-----CCCCeEEEEeCCEEEEE
Q 043469 4 SPRMNVSELGSNYVMTVEIPGV-----HVNDIRVEVDDRKLTVM 42 (104)
Q Consensus 4 ~P~~~i~e~~~~~~i~v~lPG~-----~~~di~V~v~~~~L~I~ 42 (104)
.|++.|+++++.|.|.+--+.- .++...|+-+++.|-|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEe
Confidence 6999999999999999876553 66777777777777775
No 46
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=87.50 E-value=1.7 Score=23.58 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=27.7
Q ss_pred CCEEEEEEEcCC-CCCCCeEEEEeCCEEEEEEE
Q 043469 13 GSNYVMTVEIPG-VHVNDIRVEVDDRKLTVMAK 44 (104)
Q Consensus 13 ~~~~~i~v~lPG-~~~~di~V~v~~~~L~I~~~ 44 (104)
...|...+.||+ +.++.+...+.++.|.|...
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 468999999997 88889999999999998753
No 47
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=87.40 E-value=4.4 Score=29.10 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=61.7
Q ss_pred eeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCccc
Q 043469 6 RMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDK 85 (104)
Q Consensus 6 ~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~ 85 (104)
+.||+++++..+|.|..-|.-++.-.|...+..|.|.-.... ...+|...+.|=.-|+.
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~---------------------gna~fd~d~kLwgvvnv 274 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGF---------------------GNASFDLDYKLWGVVNV 274 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecC---------------------CCceeeccceeeeeech
Confidence 468899999999999999988888888888888888754421 12246667777778888
Q ss_pred CceeEEEeCcEEEEEEeCC
Q 043469 86 DTISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 86 ~~i~A~~~~GiL~I~~pK~ 104 (104)
++..+.+-.--++|+|+|+
T Consensus 275 e~s~v~m~~tkVEIsl~k~ 293 (320)
T KOG1667|consen 275 EESSVVMGETKVEISLKKA 293 (320)
T ss_pred hhceEEeecceEEEEEecc
Confidence 8888888888899999885
No 48
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=87.19 E-value=2.6 Score=23.70 Aligned_cols=33 Identities=6% Similarity=0.244 Sum_probs=28.6
Q ss_pred CEEEEEEEcCC-CCCCCeEEEEeCCEEEEEEEEe
Q 043469 14 SNYVMTVEIPG-VHVNDIRVEVDDRKLTVMAKHS 46 (104)
Q Consensus 14 ~~~~i~v~lPG-~~~~di~V~v~~~~L~I~~~~~ 46 (104)
+.|.+.++||+ +++++.+..+.++.|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEeC
Confidence 56889999997 8999999999999999986654
No 49
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=86.49 E-value=0.54 Score=34.10 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=37.1
Q ss_pred cceeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEee
Q 043469 4 SPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHST 47 (104)
Q Consensus 4 ~P~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~ 47 (104)
+=.+++.++.....|-+--|-+..++|++-+.+++|.|+.+...
T Consensus 176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~ 219 (368)
T COG5091 176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRR 219 (368)
T ss_pred eeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccc
Confidence 34567788888888888889999999999999999999866543
No 50
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=85.85 E-value=1.8 Score=25.31 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=26.5
Q ss_pred ccEEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 043469 71 EPYQIVWTLPTNVDKDTISAEFLNGLLQIIIP 102 (104)
Q Consensus 71 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 102 (104)
..|.-.+.|| ++.++.|+-++.||.|+|.--
T Consensus 7 d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~ 37 (83)
T cd06476 7 DKYQVFLDVC-HFTPDEITVRTVDNLLEVSAR 37 (83)
T ss_pred CeEEEEEEcC-CCCHHHeEEEEECCEEEEEEE
Confidence 3577788999 888999999999999999753
No 51
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=85.70 E-value=1.8 Score=25.47 Aligned_cols=30 Identities=13% Similarity=0.372 Sum_probs=25.8
Q ss_pred CEEEEEEEcCCCCCCCeEEEEeCCEEEEEE
Q 043469 14 SNYVMTVEIPGVHVNDIRVEVDDRKLTVMA 43 (104)
Q Consensus 14 ~~~~i~v~lPG~~~~di~V~v~~~~L~I~~ 43 (104)
+.|.-.+.||.+..+.++-++.+|.|+|+.
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dGvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENGVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECCEEEEEE
Confidence 456777889999999999999999999974
No 52
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=85.50 E-value=2 Score=25.25 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=26.2
Q ss_pred cEEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 043469 72 PYQIVWTLPTNVDKDTISAEFLNGLLQIIIP 102 (104)
Q Consensus 72 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 102 (104)
.|.-.+.|| +++++.|+-.+++|.|+|+--
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge 37 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQ 37 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEE
Confidence 477788999 888999999999999999853
No 53
>PF14913 DPCD: DPCD protein family
Probab=85.48 E-value=9.4 Score=26.10 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=52.0
Q ss_pred cceeeEEEcCCEEEEEEEcCCCCCCCeEEEEeC--CEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCC
Q 043469 4 SPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDD--RKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPT 81 (104)
Q Consensus 4 ~P~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~--~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~ 81 (104)
.|-+--..+..+|.-++.==-+.++-.+|.+++ +.++|+-.- ..|-+.|.+|+
T Consensus 86 nP~~~r~dTk~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTtN-------------------------KKYyKk~~IPD 140 (194)
T PF14913_consen 86 NPIFVRRDTKTSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTTN-------------------------KKYYKKFSIPD 140 (194)
T ss_pred CCEEEEEcCccceEEEEccCCCCccceEEEEcCCCcEEEEECcC-------------------------ccceeEecCCc
Confidence 355555667778888887544588888888854 678887211 13444677772
Q ss_pred ------CcccCceeEEEeCcEEEEEEeC
Q 043469 82 ------NVDKDTISAEFLNGLLQIIIPK 103 (104)
Q Consensus 82 ------~vd~~~i~A~~~~GiL~I~~pK 103 (104)
+.+.+.++..+.|..|.|+..|
T Consensus 141 l~R~~l~l~~~~ls~~h~nNTLIIsYkK 168 (194)
T PF14913_consen 141 LDRCGLPLEQSALSFAHQNNTLIISYKK 168 (194)
T ss_pred HHhhCCCcchhhceeeeecCeEEEEecC
Confidence 3466778888899999999876
No 54
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=85.41 E-value=2 Score=25.50 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=26.0
Q ss_pred cEEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 043469 72 PYQIVWTLPTNVDKDTISAEFLNGLLQIIIP 102 (104)
Q Consensus 72 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 102 (104)
.|.-...|| .++.+.|+-++.+|.|+|+--
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ge 38 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAE 38 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEE
Confidence 466678999 889999999999999999864
No 55
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=84.96 E-value=2.2 Score=25.08 Aligned_cols=30 Identities=10% Similarity=0.305 Sum_probs=26.3
Q ss_pred ccEEEEEECCCCcccCceeEEEeCcEEEEEE
Q 043469 71 EPYQIVWTLPTNVDKDTISAEFLNGLLQIII 101 (104)
Q Consensus 71 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~ 101 (104)
..|.-.+.|| +++++.|+-++.+|.|+|+-
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g 39 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIHG 39 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEE
Confidence 4577788999 88899999999999999975
No 56
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=84.82 E-value=2.5 Score=24.57 Aligned_cols=30 Identities=10% Similarity=0.290 Sum_probs=26.4
Q ss_pred ccEEEEEECCCCcccCceeEEEeCcEEEEEE
Q 043469 71 EPYQIVWTLPTNVDKDTISAEFLNGLLQIII 101 (104)
Q Consensus 71 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~ 101 (104)
..|.-.+.|| +++++.|+-++.+|.|+|+-
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g 36 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGDFVEIHG 36 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEE
Confidence 3577789999 88999999999999999975
No 57
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=84.18 E-value=2.2 Score=24.61 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=27.0
Q ss_pred CEEEEEEEcC-CCCCCCeEEEEeC-CEEEEEEE
Q 043469 14 SNYVMTVEIP-GVHVNDIRVEVDD-RKLTVMAK 44 (104)
Q Consensus 14 ~~~~i~v~lP-G~~~~di~V~v~~-~~L~I~~~ 44 (104)
..|.=.+.|| +++.+.++-.+.+ |.|+|++.
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCcEEEEEec
Confidence 4788899999 4999999999987 99999863
No 58
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=83.87 E-value=3.3 Score=22.37 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.0
Q ss_pred CCCCCCCeEEEEeCCEEEEEEEEeecc
Q 043469 23 PGVHVNDIRVEVDDRKLTVMAKHSTEC 49 (104)
Q Consensus 23 PG~~~~di~V~v~~~~L~I~~~~~~~~ 49 (104)
++++..+|+|.+.++.++++|......
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~s~~ 38 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVPSQE 38 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEESSCH
T ss_pred cccCCCeEEEEEECCEEEEEeeCcHHH
Confidence 467777999999999999999997654
No 59
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=83.56 E-value=4.3 Score=22.56 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=30.2
Q ss_pred CCEEEEEEEcCC-CCCCCeEEEEeCCEEEEEEEEeec
Q 043469 13 GSNYVMTVEIPG-VHVNDIRVEVDDRKLTVMAKHSTE 48 (104)
Q Consensus 13 ~~~~~i~v~lPG-~~~~di~V~v~~~~L~I~~~~~~~ 48 (104)
+..|.+.++|++ +.+++....+.++.|.|.-.+...
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 468999999988 888889999999999998776543
No 60
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=83.05 E-value=4.2 Score=22.96 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=28.7
Q ss_pred cCCEEEEEEEcC-CCCCCCeEEEEeCCEEEEEEE
Q 043469 12 LGSNYVMTVEIP-GVHVNDIRVEVDDRKLTVMAK 44 (104)
Q Consensus 12 ~~~~~~i~v~lP-G~~~~di~V~v~~~~L~I~~~ 44 (104)
....|.-.+.|| +++.+.++..+.+|.|+|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENGVLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCCEEEEEEc
Confidence 367899999999 599999999999999999853
No 61
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=81.88 E-value=3.4 Score=24.28 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=26.7
Q ss_pred ccEEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 043469 71 EPYQIVWTLPTNVDKDTISAEFLNGLLQIIIP 102 (104)
Q Consensus 71 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 102 (104)
..|.-.+.|| .++.+.|+-.++++.|+|+-.
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~ 41 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGK 41 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEE
Confidence 4677789999 789999999999999999853
No 62
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=81.63 E-value=4.3 Score=23.80 Aligned_cols=31 Identities=16% Similarity=0.430 Sum_probs=27.2
Q ss_pred CCEEEEEEEcC-CCCCCCeEEEEeCCEEEEEE
Q 043469 13 GSNYVMTVEIP-GVHVNDIRVEVDDRKLTVMA 43 (104)
Q Consensus 13 ~~~~~i~v~lP-G~~~~di~V~v~~~~L~I~~ 43 (104)
...|.-.+.|| +++.+.++-++.+|.|+|+.
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECCEEEEEe
Confidence 45888899999 59999999999999999974
No 63
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=81.63 E-value=3.6 Score=24.01 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=26.4
Q ss_pred cEEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 043469 72 PYQIVWTLPTNVDKDTISAEFLNGLLQIIIP 102 (104)
Q Consensus 72 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 102 (104)
.|.-.+.|| .++++.|+-+.++|.|+|+--
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ge 38 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAE 38 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEE
Confidence 577788999 889999999999999999754
No 64
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=81.09 E-value=3.9 Score=23.91 Aligned_cols=30 Identities=7% Similarity=0.282 Sum_probs=26.1
Q ss_pred ccEEEEEECCCCcccCceeEEEeCcEEEEEE
Q 043469 71 EPYQIVWTLPTNVDKDTISAEFLNGLLQIII 101 (104)
Q Consensus 71 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~ 101 (104)
..|.-.+.+| +++++.|+-.+.++.|+|.-
T Consensus 7 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g 36 (84)
T cd06498 7 DKFSVNLDVK-HFSPEELKVKVLGDFIEIHG 36 (84)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEE
Confidence 3577788898 88899999999999999975
No 65
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=80.18 E-value=5.6 Score=23.79 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=25.6
Q ss_pred CEEEEEEEcC-CCCCCCeEEEEe-CCEEEEEE
Q 043469 14 SNYVMTVEIP-GVHVNDIRVEVD-DRKLTVMA 43 (104)
Q Consensus 14 ~~~~i~v~lP-G~~~~di~V~v~-~~~L~I~~ 43 (104)
..|.=++.|| +++.++|+-.+. +|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 3567788898 699999999997 99999975
No 66
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=77.85 E-value=5.1 Score=23.67 Aligned_cols=36 Identities=17% Similarity=0.371 Sum_probs=28.5
Q ss_pred CEEEEEEEcC-CCCCCCeEEEEeCCEEEEEEEEeecc
Q 043469 14 SNYVMTVEIP-GVHVNDIRVEVDDRKLTVMAKHSTEC 49 (104)
Q Consensus 14 ~~~~i~v~lP-G~~~~di~V~v~~~~L~I~~~~~~~~ 49 (104)
..|.-.+.|| +++.+.++-.+.+|.|+|+..+....
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~pk~~~~ 91 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENGVLTITIPKKEEE 91 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTSEEEEEEEBSSSC
T ss_pred ceEEEEEcCCCcCCcceEEEEecCCEEEEEEEccccc
Confidence 4677899998 59999999999999999998887665
No 67
>PRK10743 heat shock protein IbpA; Provisional
Probab=77.42 E-value=5 Score=25.78 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=26.1
Q ss_pred ccEEEEEECCCCcccCceeEEEeCcEEEEEE
Q 043469 71 EPYQIVWTLPTNVDKDTISAEFLNGLLQIII 101 (104)
Q Consensus 71 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~ 101 (104)
..|.-...|| +++.+.|+-++++|.|+|.-
T Consensus 45 ~~~~v~aelP-Gv~kedi~V~v~~~~LtI~g 74 (137)
T PRK10743 45 NHYRIAIAVA-GFAESELEITAQDNLLVVKG 74 (137)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEE
Confidence 4577788999 88999999999999999975
No 68
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=77.15 E-value=6.1 Score=23.19 Aligned_cols=30 Identities=7% Similarity=0.079 Sum_probs=25.6
Q ss_pred cEEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 043469 72 PYQIVWTLPTNVDKDTISAEFLNGLLQIIIP 102 (104)
Q Consensus 72 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 102 (104)
.|.-.+.|| .+.++.|+-+++++.|+|.--
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~ 37 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGK 37 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEE
Confidence 477778888 888999999999999999753
No 69
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=76.96 E-value=6.5 Score=23.02 Aligned_cols=30 Identities=7% Similarity=0.274 Sum_probs=26.0
Q ss_pred ccEEEEEECCCCcccCceeEEEeCcEEEEEE
Q 043469 71 EPYQIVWTLPTNVDKDTISAEFLNGLLQIII 101 (104)
Q Consensus 71 ~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~ 101 (104)
..|.-.+.|| +++++.|+-++.++.|+|+-
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g 39 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKTKDGVVEITG 39 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEEECCEEEEEE
Confidence 3577788999 89999999999999999975
No 70
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=74.16 E-value=12 Score=20.53 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=29.5
Q ss_pred eeEE-EcCCEEEEEEEcCCCCCCCeEEEEe-CCEEEEEEEEe
Q 043469 7 MNVS-ELGSNYVMTVEIPGVHVNDIRVEVD-DRKLTVMAKHS 46 (104)
Q Consensus 7 ~~i~-e~~~~~~i~v~lPG~~~~di~V~v~-~~~L~I~~~~~ 46 (104)
+.+. -..+.|.|++..||+....-.|.+. +....|.....
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 3444 3467899999999999988888886 56677765544
No 71
>PRK10568 periplasmic protein; Provisional
Probab=72.25 E-value=11 Score=25.73 Aligned_cols=27 Identities=15% Similarity=0.275 Sum_probs=23.5
Q ss_pred CCCCCCCeEEEEeCCEEEEEEEEeecc
Q 043469 23 PGVHVNDIRVEVDDRKLTVMAKHSTEC 49 (104)
Q Consensus 23 PG~~~~di~V~v~~~~L~I~~~~~~~~ 49 (104)
|+++..+|+|.+.+|.++++|......
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~s~~ 99 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVESQA 99 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeCCHH
Confidence 667788999999999999999998654
No 72
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=70.72 E-value=15 Score=23.46 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=30.9
Q ss_pred CCEEEEEEEcCC-CCCCCeEEEEeCCEEEEEEEEeecc
Q 043469 13 GSNYVMTVEIPG-VHVNDIRVEVDDRKLTVMAKHSTEC 49 (104)
Q Consensus 13 ~~~~~i~v~lPG-~~~~di~V~v~~~~L~I~~~~~~~~ 49 (104)
...|.-++.||. ++.+.+.-++.+|.|+|.-.+....
T Consensus 99 ~~~f~r~~~Lp~~v~~~~~~A~~~nGvL~I~lpk~~~~ 136 (146)
T COG0071 99 YGEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEPE 136 (146)
T ss_pred eeeEEEEEECcccccccceeeEeeCcEEEEEEeccccc
Confidence 357888999996 8888899999999999997776553
No 73
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=70.21 E-value=9 Score=24.82 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=26.1
Q ss_pred cEEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 043469 72 PYQIVWTLPTNVDKDTISAEFLNGLLQIIIP 102 (104)
Q Consensus 72 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 102 (104)
.|.-...|| +++.+.|+-.+++|.|+|+--
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge 73 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGT 73 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEE
Confidence 577788999 889999999999999999753
No 74
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=69.04 E-value=18 Score=20.29 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=28.3
Q ss_pred CCEEEEEEEcCC-CCCCCeEEEEeCCEEEEEEEEe
Q 043469 13 GSNYVMTVEIPG-VHVNDIRVEVDDRKLTVMAKHS 46 (104)
Q Consensus 13 ~~~~~i~v~lPG-~~~~di~V~v~~~~L~I~~~~~ 46 (104)
+..|.+.++|++ +.+++.+..+.++.|.|.-.+.
T Consensus 41 ~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~ 75 (84)
T cd06466 41 GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKA 75 (84)
T ss_pred CCeEEEecccccccCchhcEEEEeCeEEEEEEEcC
Confidence 457999999987 8888999999999999886664
No 75
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=69.00 E-value=5.5 Score=22.02 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=10.7
Q ss_pred CceeEEEeCcEEEE
Q 043469 86 DTISAEFLNGLLQI 99 (104)
Q Consensus 86 ~~i~A~~~~GiL~I 99 (104)
..|.|.|+||+|+-
T Consensus 3 ~~I~aiYe~GvlkP 16 (60)
T PF01954_consen 3 KVIEAIYENGVLKP 16 (60)
T ss_dssp --EEEEEETTEEEE
T ss_pred ceEEEEEECCEEEE
Confidence 35899999999874
No 76
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=68.80 E-value=27 Score=23.42 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=17.4
Q ss_pred CCCeEEEEeCCEEEEEEEEeec
Q 043469 27 VNDIRVEVDDRKLTVMAKHSTE 48 (104)
Q Consensus 27 ~~di~V~v~~~~L~I~~~~~~~ 48 (104)
|++++|+++++.|+|+|.+-..
T Consensus 12 P~~V~v~i~~~~v~vkGp~G~l 33 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKGTL 33 (178)
T ss_pred CCCCEEEEECCEEEEECCCEEE
Confidence 5688999999999998766433
No 77
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=67.76 E-value=17 Score=21.54 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=31.1
Q ss_pred EEEcCCEEEEEEEc-CCCCCCCeEEEEeC--CEEEEEEEEeecc
Q 043469 9 VSELGSNYVMTVEI-PGVHVNDIRVEVDD--RKLTVMAKHSTEC 49 (104)
Q Consensus 9 i~e~~~~~~i~v~l-PG~~~~di~V~v~~--~~L~I~~~~~~~~ 49 (104)
+.++++.++|.+.+ |+.+++.| +.+.+ +.|.|+-...+..
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i-~g~~~~~~~Lki~v~ApP~~ 43 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSI-VGYNEWRKRVEVKIKAPPVE 43 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCccee-ccccCCCCeEEEEEecCCCC
Confidence 45788899999999 99888887 34566 7888887776665
No 78
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=67.38 E-value=14 Score=25.35 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=32.1
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEE
Q 043469 7 MNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMA 43 (104)
Q Consensus 7 ~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~ 43 (104)
+-|-+.++...+.+.|-|+..++++|+++.+.|.+..
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v 113 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKV 113 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccceeeee
Confidence 4566778889999999999999999999999888763
No 79
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=66.35 E-value=22 Score=20.24 Aligned_cols=34 Identities=12% Similarity=0.305 Sum_probs=27.4
Q ss_pred CCEEEEEEEcCC-CCCCCeEEEEeCCEEEEEEEEe
Q 043469 13 GSNYVMTVEIPG-VHVNDIRVEVDDRKLTVMAKHS 46 (104)
Q Consensus 13 ~~~~~i~v~lPG-~~~~di~V~v~~~~L~I~~~~~ 46 (104)
+..|.+.++|.+ +.+++-.+.+.++.+.|.-.+.
T Consensus 41 ~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~ 75 (84)
T cd06489 41 GNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKT 75 (84)
T ss_pred CCcEEEeeecCceecchhcEEEEeCcEEEEEEEcC
Confidence 346888888877 7888888888888888887764
No 80
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=65.70 E-value=11 Score=25.34 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=28.5
Q ss_pred EEEEEEEcC-CCCCCCeEEEE-eCCEEEEEEEEeecc
Q 043469 15 NYVMTVEIP-GVHVNDIRVEV-DDRKLTVMAKHSTEC 49 (104)
Q Consensus 15 ~~~i~v~lP-G~~~~di~V~v-~~~~L~I~~~~~~~~ 49 (104)
+|.=+..|| |++++.|.=.+ .+|.|+|+|.+....
T Consensus 116 ~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 116 SFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EEEEEecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 344467787 89999999999 589999999887765
No 81
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=65.08 E-value=40 Score=22.73 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=19.0
Q ss_pred CCCCCCCeEEEEeCCEEEEEEEEee
Q 043469 23 PGVHVNDIRVEVDDRKLTVMAKHST 47 (104)
Q Consensus 23 PG~~~~di~V~v~~~~L~I~~~~~~ 47 (104)
|=.=|++++|+++++.++++|.+-.
T Consensus 9 pI~IP~~V~v~i~~~~v~VkGp~G~ 33 (180)
T PRK05518 9 EIEIPEGVTVEIEGLVVTVKGPKGE 33 (180)
T ss_pred cEEcCCCCEEEEECCEEEEECCCeE
Confidence 3333688999999999999876643
No 82
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=63.71 E-value=38 Score=22.58 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=17.1
Q ss_pred CCCeEEEEeCCEEEEEEEEee
Q 043469 27 VNDIRVEVDDRKLTVMAKHST 47 (104)
Q Consensus 27 ~~di~V~v~~~~L~I~~~~~~ 47 (104)
|++++|+++++.++++|.+-.
T Consensus 7 P~~V~v~i~~~~i~vkGp~G~ 27 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPKGE 27 (170)
T ss_pred CCCCEEEEeCCEEEEECCCeE
Confidence 578899999999999876643
No 83
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=62.22 E-value=20 Score=20.89 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=26.2
Q ss_pred CCcccEEEeeeccccEEEEEECCCCcccCc-eeEEEeCcEEE
Q 043469 58 GSISAYHRREYGGEPYQIVWTLPTNVDKDT-ISAEFLNGLLQ 98 (104)
Q Consensus 58 ~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~-i~A~~~~GiL~ 98 (104)
...+.|..+...+--|.|.|.+|+...+.. +.-+|.+|.+.
T Consensus 28 ~~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~ 69 (85)
T PF14814_consen 28 DRPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVS 69 (85)
T ss_dssp -STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEE
T ss_pred CCCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEE
Confidence 344566666556677999999998888877 77888877543
No 84
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=61.75 E-value=45 Score=22.23 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.3
Q ss_pred CCCeEEEEeCCEEEEEEEEee
Q 043469 27 VNDIRVEVDDRKLTVMAKHST 47 (104)
Q Consensus 27 ~~di~V~v~~~~L~I~~~~~~ 47 (104)
|++++|+++++.|+|+|.+-.
T Consensus 11 P~~V~v~~~~~~v~v~Gp~G~ 31 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGPKGE 31 (175)
T ss_pred CCCcEEEEeCCEEEEEcCCeE
Confidence 578999999999999876543
No 85
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=58.81 E-value=49 Score=22.48 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=19.0
Q ss_pred cCCCCCCCeEEEEeCCEEEEEEEEe
Q 043469 22 IPGVHVNDIRVEVDDRKLTVMAKHS 46 (104)
Q Consensus 22 lPG~~~~di~V~v~~~~L~I~~~~~ 46 (104)
.|=-=|++++|+++++.++|+|.+-
T Consensus 8 ~~I~IP~~V~V~i~~~~v~VkGp~G 32 (190)
T PTZ00027 8 EKIRIPEGVTVTVKSRKVTVTGKYG 32 (190)
T ss_pred CCEecCCCCEEEEECCEEEEECCCc
Confidence 3433468999999999999986654
No 86
>PF09985 DUF2223: Domain of unknown function (DUF2223); InterPro: IPR019248 This entry represents various prokaryotic membrane-anchored proteins predicted to be involved in the regulation of amylopullulanase. ; PDB: 1UG9_A 1ULV_A.
Probab=58.23 E-value=61 Score=22.64 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=47.8
Q ss_pred eeeEEEcCCEEEEEEEcC----------CCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEE
Q 043469 6 RMNVSELGSNYVMTVEIP----------GVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQI 75 (104)
Q Consensus 6 ~~~i~e~~~~~~i~v~lP----------G~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r 75 (104)
.+.+.+.++.|++++.+. ||+..-|.|.++... |............+....+.+...-..+++...
T Consensus 35 ~f~v~~~g~~~~f~~~~~~l~NpW~~P~GFS~q~i~IYid~~~----gg~~~~~~pG~n~~~~~~Wd~ai~i~Gw~~~~~ 110 (228)
T PF09985_consen 35 SFKVYEDGDNLVFRFTFADLTNPWNGPNGFSLQIIQIYIDTPD----GGGTSTLKPGLNVEFGHPWDYAIRISGWGSYGN 110 (228)
T ss_dssp EEEEEEETTEEEEEEEESS---TT---SS-SSEEEEEEEE-S-----SS-EE-S-GGG-EEESS-ECEEEEEEST--T--
T ss_pred EEEEEEcCCEEEEEEEECCCCCCcccccCccceEEEEEEecCC----CCcccccCCcccCCCCCCccEEEEEEeeecccc
Confidence 467889999999999983 788888999886432 000000000000001223333332222322355
Q ss_pred EEECCCCcc-cCc--eeEEEeCcEEEEEEeCC
Q 043469 76 VWTLPTNVD-KDT--ISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 76 ~~~lP~~vd-~~~--i~A~~~~GiL~I~~pK~ 104 (104)
.+..|+.-. ... +.+.-.++.+++.+||.
T Consensus 111 ~~~~~~G~~~~~~~~v~~~~~~~~I~~~vpk~ 142 (228)
T PF09985_consen 111 AIYDADGTAISGAPQVSVDPSGNTIIVEVPKK 142 (228)
T ss_dssp EEE-TTS-E-EE--EEEEECCCTEEEEEEEGG
T ss_pred eEEccCCccCCCcceEEeccCCCEEEEEcCHH
Confidence 667776655 233 44445689999999984
No 87
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=57.65 E-value=36 Score=20.42 Aligned_cols=35 Identities=14% Similarity=0.379 Sum_probs=30.0
Q ss_pred CCEEEEEEEcCC-CCCCCeEEEEeCCEEEEEEEEee
Q 043469 13 GSNYVMTVEIPG-VHVNDIRVEVDDRKLTVMAKHST 47 (104)
Q Consensus 13 ~~~~~i~v~lPG-~~~~di~V~v~~~~L~I~~~~~~ 47 (104)
+..|.+.++|.+ +.+++-...+.++.|.|+-.+..
T Consensus 43 ~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 43 GKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred CeeEEEEeEhhhhccccccEEEecCCeEEEEEEECC
Confidence 446999999988 89999999999999999988754
No 88
>PF14913 DPCD: DPCD protein family
Probab=57.48 E-value=16 Score=24.99 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=34.6
Q ss_pred eeEEEcCCEEEEEEEcCCCCC-------CCeEEEEeCCEEEEEEEEeeccc
Q 043469 7 MNVSELGSNYVMTVEIPGVHV-------NDIRVEVDDRKLTVMAKHSTECW 50 (104)
Q Consensus 7 ~~i~e~~~~~~i~v~lPG~~~-------~di~V~v~~~~L~I~~~~~~~~~ 50 (104)
+-|.-++..|.=++.+|.++. +.|+....+++|.|+.++....-
T Consensus 123 ivvRTtNKKYyKk~~IPDl~R~~l~l~~~~ls~~h~nNTLIIsYkKP~~il 173 (194)
T PF14913_consen 123 IVVRTTNKKYYKKFSIPDLDRCGLPLEQSALSFAHQNNTLIISYKKPKEIL 173 (194)
T ss_pred EEEECcCccceeEecCCcHHhhCCCcchhhceeeeecCeEEEEecCcHHHH
Confidence 456667789999999997543 57777778999999998877653
No 89
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.25 E-value=5.6 Score=30.41 Aligned_cols=74 Identities=15% Similarity=0.345 Sum_probs=47.8
Q ss_pred cceeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCc
Q 043469 4 SPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNV 83 (104)
Q Consensus 4 ~P~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~v 83 (104)
.|.+.+...++...|.+..|=.....+.+...++....+ .+.|--++.+|..+
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~---------------------------~~pyflrl~~p~~~ 55 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFS---------------------------AGPYFLRLAGPGMV 55 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHhhhhhhc---------------------------cchhHHhhcCcchh
Confidence 588999999999999999996665666655555544443 23333345666433
Q ss_pred ccC-ceeEEE--eCcEEEEEEeCC
Q 043469 84 DKD-TISAEF--LNGLLQIIIPKL 104 (104)
Q Consensus 84 d~~-~i~A~~--~~GiL~I~~pK~ 104 (104)
-.+ .-.|+| ++|...|.+||.
T Consensus 56 ~~d~~~n~s~d~kd~~~~vK~~K~ 79 (466)
T KOG3247|consen 56 EDDARPNASYDAKDGYAHVKVPKF 79 (466)
T ss_pred hhhccccCccccccceeEEeecCC
Confidence 332 234444 578888888873
No 90
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=56.51 E-value=41 Score=20.03 Aligned_cols=33 Identities=6% Similarity=0.104 Sum_probs=27.7
Q ss_pred ccccEEEEEECCCCcccCceeEEEeCcEEEEEE
Q 043469 69 GGEPYQIVWTLPTNVDKDTISAEFLNGLLQIII 101 (104)
Q Consensus 69 ~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~ 101 (104)
......-.|+||.++..+.+...+...-|+|.+
T Consensus 13 T~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 13 TMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EcCEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 344566678999999999999999999999876
No 91
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.40 E-value=38 Score=20.48 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=26.9
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEE
Q 043469 7 MNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMA 43 (104)
Q Consensus 7 ~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~ 43 (104)
+.+.+.+| .|....||++ .|++..+++.|.|.+
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~kkL~v~t 58 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPENKKLLVNT 58 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEecccceEEEec
Confidence 57888888 6677889976 578888899999987
No 92
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=56.02 E-value=35 Score=19.19 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=25.5
Q ss_pred cEEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 043469 72 PYQIVWTLPTNVDKDTISAEFLNGLLQIIIP 102 (104)
Q Consensus 72 ~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 102 (104)
...-.|.+|..++.+.++..+.+.-|.|.++
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 3555778999999999999999888888874
No 93
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=55.17 E-value=23 Score=22.86 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.5
Q ss_pred CCCCCCCeEEEEeCCEEEEEEEEeecc
Q 043469 23 PGVHVNDIRVEVDDRKLTVMAKHSTEC 49 (104)
Q Consensus 23 PG~~~~di~V~v~~~~L~I~~~~~~~~ 49 (104)
.|+...++.|.+.++.++++|......
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~s~~ 64 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAASQE 64 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeCCHH
Confidence 467788899999999999999997665
No 94
>PRK05090 hypothetical protein; Validated
Probab=54.36 E-value=46 Score=20.07 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=32.1
Q ss_pred EEEcCCEEEEEEEc-CCCCCCCeEEEEeCCEEEEEEEEeeccc
Q 043469 9 VSELGSNYVMTVEI-PGVHVNDIRVEVDDRKLTVMAKHSTECW 50 (104)
Q Consensus 9 i~e~~~~~~i~v~l-PG~~~~di~V~v~~~~L~I~~~~~~~~~ 50 (104)
+..+++.++|.+.+ ||-+++.|.= +.++.|.|+-...+..-
T Consensus 4 ~~~~~~~~~l~i~V~P~A~~~~i~~-~~~~~lkv~v~ApPveG 45 (95)
T PRK05090 4 VTWDGDGLVLRLYIQPKASRDQIVG-LHGDELKVAITAPPVDG 45 (95)
T ss_pred eEEeCCeEEEEEEEeeCCCcceecc-ccCCEEEEEEecCCCCC
Confidence 56788999999999 9988887653 46788998877766653
No 95
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=54.21 E-value=66 Score=21.82 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=18.0
Q ss_pred CCCeEEEEeCCEEEEEEEEeec
Q 043469 27 VNDIRVEVDDRKLTVMAKHSTE 48 (104)
Q Consensus 27 ~~di~V~v~~~~L~I~~~~~~~ 48 (104)
|++++|+++++.|+|+|.+-..
T Consensus 12 P~~V~V~i~~~~ItVkGpkG~L 33 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKRGTL 33 (189)
T ss_pred CCCCEEEEeCCEEEEECCCcEE
Confidence 6789999999999999766433
No 96
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=52.69 E-value=67 Score=21.43 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=17.7
Q ss_pred CCCeEEEEeCCEEEEEEEEeec
Q 043469 27 VNDIRVEVDDRKLTVMAKHSTE 48 (104)
Q Consensus 27 ~~di~V~v~~~~L~I~~~~~~~ 48 (104)
|++++|+++++.|+|+|.+-..
T Consensus 12 P~~V~v~~~~~~v~vkGp~G~l 33 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGPKGEL 33 (178)
T ss_pred CCCCEEEEECCEEEEECCCEEE
Confidence 5789999999999999765433
No 97
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=51.11 E-value=27 Score=19.04 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=18.0
Q ss_pred EcCCCCC-CCeEEEEeCCEEEEE
Q 043469 21 EIPGVHV-NDIRVEVDDRKLTVM 42 (104)
Q Consensus 21 ~lPG~~~-~di~V~v~~~~L~I~ 42 (104)
+-.||.. +.|+|.+..+.|+|+
T Consensus 34 ~~aGF~~G~~v~V~v~~g~lvIt 56 (57)
T PF08845_consen 34 EEAGFTIGDPVKVRVMPGCLVIT 56 (57)
T ss_pred HHhCCCCCCEEEEEEECCEEEEe
Confidence 3468765 689999999999997
No 98
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=50.96 E-value=19 Score=22.05 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.4
Q ss_pred CceeEEEeCcEEEEEEe
Q 043469 86 DTISAEFLNGLLQIIIP 102 (104)
Q Consensus 86 ~~i~A~~~~GiL~I~~p 102 (104)
..+.+.+.+|+|+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 45778889999999987
No 99
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=49.14 E-value=28 Score=21.38 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.1
Q ss_pred CceeEEEeCcEEEEEEeC
Q 043469 86 DTISAEFLNGLLQIIIPK 103 (104)
Q Consensus 86 ~~i~A~~~~GiL~I~~pK 103 (104)
..+.+.+.+|+|+|.++.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 357889999999999864
No 100
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=48.43 E-value=21 Score=21.92 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.6
Q ss_pred eeEEEeCcEEEEEEeC
Q 043469 88 ISAEFLNGLLQIIIPK 103 (104)
Q Consensus 88 i~A~~~~GiL~I~~pK 103 (104)
+.+.+.+|+|+|+++.
T Consensus 29 ~D~e~~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERNGGVLTLTFEN 44 (105)
T ss_pred eeeeccCCEEEEEECC
Confidence 6788899999999864
No 101
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=48.38 E-value=16 Score=20.30 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=19.3
Q ss_pred CCCCCeEEEEeCCEEEEEEEEeec
Q 043469 25 VHVNDIRVEVDDRKLTVMAKHSTE 48 (104)
Q Consensus 25 ~~~~di~V~v~~~~L~I~~~~~~~ 48 (104)
++.+.|.+....+.|.|+|+.=.-
T Consensus 23 f~~~~I~l~t~~g~l~I~G~~L~I 46 (66)
T PF07873_consen 23 FDDEEIRLNTKKGKLTIKGEGLVI 46 (66)
T ss_dssp EETTEEEEEETTEEEEEEEEEEEE
T ss_pred ECCCEEEEEeCCEEEEEECceEEE
Confidence 567888888899999999887443
No 102
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=47.96 E-value=45 Score=18.05 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=25.5
Q ss_pred CEEEEEEEcCC-CCCCCeEEEEeCCEEEEEE
Q 043469 14 SNYVMTVEIPG-VHVNDIRVEVDDRKLTVMA 43 (104)
Q Consensus 14 ~~~~i~v~lPG-~~~~di~V~v~~~~L~I~~ 43 (104)
..|.+.++|.| +.+++-...+.++.|.|.-
T Consensus 47 ~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L 77 (79)
T PF04969_consen 47 KEYLLEGELFGEIDPDESTWKVKDNKIEITL 77 (79)
T ss_dssp CEEEEEEEBSS-BECCCEEEEEETTEEEEEE
T ss_pred ceEEEEEEEeeeEcchhcEEEEECCEEEEEE
Confidence 68889999988 8888999999888888764
No 103
>PRK00647 hypothetical protein; Validated
Probab=47.38 E-value=50 Score=20.03 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=28.9
Q ss_pred CCEEEEEEEc-CCCCCCCeEEEEeCCEEEEEEEEeeccc
Q 043469 13 GSNYVMTVEI-PGVHVNDIRVEVDDRKLTVMAKHSTECW 50 (104)
Q Consensus 13 ~~~~~i~v~l-PG~~~~di~V~v~~~~L~I~~~~~~~~~ 50 (104)
++.++|.+.+ ||-+++.|. .+.++.|.|+-...+..-
T Consensus 3 ~~~~~l~V~V~P~Ak~~~I~-g~~~~~Lkvrv~ApPvdG 40 (96)
T PRK00647 3 EGFWILEVKVTPKARENKIV-GFEGGILKVRVTEVPEKG 40 (96)
T ss_pred CCcEEEEEEEeeCCCcceec-cccCCEEEEEEecCCCCC
Confidence 5678999998 998888884 556788999877776653
No 104
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=47.24 E-value=20 Score=21.87 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=13.9
Q ss_pred ceeEEEeCcEEEEEEeC
Q 043469 87 TISAEFLNGLLQIIIPK 103 (104)
Q Consensus 87 ~i~A~~~~GiL~I~~pK 103 (104)
.+.+.+.+|+|+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 36778889999999863
No 105
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=46.54 E-value=45 Score=23.32 Aligned_cols=49 Identities=12% Similarity=0.039 Sum_probs=27.0
Q ss_pred EEEeCCEEEEEEEEeecccccccccCCCcccEEE-eeeccccEEEEEECCC
Q 043469 32 VEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHR-REYGGEPYQIVWTLPT 81 (104)
Q Consensus 32 V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~f~r~~~lP~ 81 (104)
+.++++.|+|++.+........+ ..-..++... ....+|.|+-+++||.
T Consensus 60 v~v~~G~L~i~a~~~~~~~~~~~-~~~tsg~i~t~~~~~YG~~EaR~K~p~ 109 (258)
T cd02178 60 VSVEDGNLVLSATRHPGTELGNG-YKVTTGSITSKEKVKYGYFEARAKASN 109 (258)
T ss_pred eEEECCEEEEEEEcCCCCcCCCC-ccEEEEEEEeCCceEEEEEEEEEEcCC
Confidence 56779999999988764210000 0001111111 1235688888999984
No 106
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=43.16 E-value=43 Score=21.91 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=19.0
Q ss_pred ECCCCcccCceeEEEeCcEEEEEEeC
Q 043469 78 TLPTNVDKDTISAEFLNGLLQIIIPK 103 (104)
Q Consensus 78 ~lP~~vd~~~i~A~~~~GiL~I~~pK 103 (104)
.=|+.|.+..-.....+|-++++||+
T Consensus 150 ~~p~~V~p~~~~~~~~~~~~~~~lp~ 175 (177)
T PF06964_consen 150 ENPENVVPVTSTVSAEGGTFTYTLPP 175 (177)
T ss_dssp SSTTSSEEEEEEEEEETTEEEEEE-S
T ss_pred CCCCEEEEEEeeEEecCCEEEEEeCC
Confidence 45777777766666679999999986
No 107
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=42.55 E-value=1.2e+02 Score=21.42 Aligned_cols=69 Identities=14% Similarity=0.052 Sum_probs=36.4
Q ss_pred EEEEE-EEcCCCCCCCeEEEE--eCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCcccCceeEE
Q 043469 15 NYVMT-VEIPGVHVNDIRVEV--DDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDKDTISAE 91 (104)
Q Consensus 15 ~~~i~-v~lPG~~~~di~V~v--~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~ 91 (104)
.+.|. -.|||+..+==-|.+ ++++|... .++....+.-. ..|..-|+++|...-|++.|..
T Consensus 9 ~~~i~~~~l~g~~~e~SGLTy~pd~~tLfaV--------------~d~~~~i~els-~~G~vlr~i~l~g~~D~EgI~y- 72 (248)
T PF06977_consen 9 RVVIEAKPLPGILDELSGLTYNPDTGTLFAV--------------QDEPGEIYELS-LDGKVLRRIPLDGFGDYEGITY- 72 (248)
T ss_dssp EEEEEEEE-TT--S-EEEEEEETTTTEEEEE--------------ETTTTEEEEEE-TT--EEEEEE-SS-SSEEEEEE-
T ss_pred EEEEeeeECCCccCCccccEEcCCCCeEEEE--------------ECCCCEEEEEc-CCCCEEEEEeCCCCCCceeEEE-
Confidence 34443 578999886333555 45666554 22333333333 3578899999998889998865
Q ss_pred EeCcEEEE
Q 043469 92 FLNGLLQI 99 (104)
Q Consensus 92 ~~~GiL~I 99 (104)
..||.+.|
T Consensus 73 ~g~~~~vl 80 (248)
T PF06977_consen 73 LGNGRYVL 80 (248)
T ss_dssp -STTEEEE
T ss_pred ECCCEEEE
Confidence 46776665
No 108
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=42.52 E-value=74 Score=21.46 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=27.2
Q ss_pred CCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEe-eeccccEEEEEECCC
Q 043469 27 VNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRR-EYGGEPYQIVWTLPT 81 (104)
Q Consensus 27 ~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~f~r~~~lP~ 81 (104)
++++. +.++.|.|++.+...... .-..+....+ ...+|.|+-++.+|.
T Consensus 31 ~~nv~--v~~g~L~l~~~~~~~~~~-----~~tsg~i~S~~~f~yG~~ear~k~~~ 79 (212)
T cd02175 31 ADNVE--FSDGGLALTLTNDTYGEK-----PYACGEYRTRGFYGYGRYEVRMKPAK 79 (212)
T ss_pred cccEE--EECCeEEEEEeCCcCCCC-----ccccceEEECceEEeeEEEEEEEcCC
Confidence 45544 458999999876542100 1112222222 235788888999885
No 109
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=42.21 E-value=22 Score=20.91 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=19.3
Q ss_pred CCCCCeEEEEeCCEEEEEEEEeec
Q 043469 25 VHVNDIRVEVDDRKLTVMAKHSTE 48 (104)
Q Consensus 25 ~~~~di~V~v~~~~L~I~~~~~~~ 48 (104)
++.+.|.+....+.|.|+|+.=.-
T Consensus 41 y~~~~I~l~t~~G~l~I~G~~L~I 64 (85)
T TIGR02856 41 FSPEEVKLNSTNGKITIEGKNFVI 64 (85)
T ss_pred ECCCEEEEEcCceEEEEEcccEEE
Confidence 678888999999999999876443
No 110
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=42.06 E-value=43 Score=22.44 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=26.8
Q ss_pred eeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEE
Q 043469 7 MNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKH 45 (104)
Q Consensus 7 ~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~ 45 (104)
|++.-.+=.=-|.+.+||+..+.+.++..++.|.=.|..
T Consensus 7 MNVLY~G~~NpisIsvpgv~~~~v~~s~~ggsl~~~g~~ 45 (181)
T PF12080_consen 7 MNVLYRGVDNPISISVPGVPSNKVPASATGGSLSKSGGG 45 (181)
T ss_pred cceEecCCCCcEEEEeCCCCccccEEEeeCCEEEecCCC
Confidence 344444333457889999999999998887666555444
No 111
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=41.96 E-value=59 Score=18.30 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=15.0
Q ss_pred CCEEEEEEEcCCCCCCCeEEEEeC
Q 043469 13 GSNYVMTVEIPGVHVNDIRVEVDD 36 (104)
Q Consensus 13 ~~~~~i~v~lPG~~~~di~V~v~~ 36 (104)
.+.|.|.+..+|+....+.+....
T Consensus 43 ~g~~~l~is~~Gy~~~~~~i~~~~ 66 (88)
T PF13715_consen 43 EGDYTLKISYIGYETKTITISVNS 66 (88)
T ss_pred CCCeEEEEEEeCEEEEEEEEEecC
Confidence 344666666677666666666643
No 112
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=41.84 E-value=17 Score=21.90 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=32.3
Q ss_pred CcccEEEeeeccccEEEEEECCCCcccCceeEEEeCcEEEEEEe
Q 043469 59 SISAYHRREYGGEPYQIVWTLPTNVDKDTISAEFLNGLLQIIIP 102 (104)
Q Consensus 59 ~~~~~~~~e~~~~~f~r~~~lP~~vd~~~i~A~~~~GiL~I~~p 102 (104)
....|.......-.|+..+.||. ...--|+|.+.|-+|.+...
T Consensus 42 ~~RtYtw~PI~gT~ySLaLVLP~-Ys~~~i~A~l~d~i~q~~~~ 84 (94)
T PF08473_consen 42 VNRTYTWTPINGTDYSLALVLPS-YSMYYIQANLSDTILQAKSK 84 (94)
T ss_pred eceeEEEeccCCCcceeEEEcCC-CccceeecccchHHHHHHhh
Confidence 33555555556668999999996 88888999999888766543
No 113
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=40.46 E-value=1.2e+02 Score=20.61 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=19.9
Q ss_pred CCCCCCCeEEEEeCCEEEEEEEEeec
Q 043469 23 PGVHVNDIRVEVDDRKLTVMAKHSTE 48 (104)
Q Consensus 23 PG~~~~di~V~v~~~~L~I~~~~~~~ 48 (104)
|=.-|++++|+++++.++++|.+-..
T Consensus 8 ~i~~P~gV~V~i~~~~v~vkGpkGeL 33 (178)
T COG0097 8 PIVIPAGVTVSIEGQVVTVKGPKGEL 33 (178)
T ss_pred cEecCCCeEEEEeccEEEEECCCcEE
Confidence 33448899999999999998766433
No 114
>PRK04021 hypothetical protein; Reviewed
Probab=40.14 E-value=82 Score=18.83 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=30.5
Q ss_pred EEEcCCEEEEEEEc-CCCCCCCeEEEEe--CCEEEEEEEEeecc
Q 043469 9 VSELGSNYVMTVEI-PGVHVNDIRVEVD--DRKLTVMAKHSTEC 49 (104)
Q Consensus 9 i~e~~~~~~i~v~l-PG~~~~di~V~v~--~~~L~I~~~~~~~~ 49 (104)
+.+.++..+|.+.+ |+.+++.|. .+. ++.|.|+-...+..
T Consensus 2 ~~~~~~~v~l~v~v~P~a~~~~i~-g~~~~~~~lkv~v~apP~~ 44 (92)
T PRK04021 2 LKETKEGVILQVYVQPKAKENEIE-GVDEWRGRLKVKIKAPPVK 44 (92)
T ss_pred eEEeCCcEEEEEEEeeCCCcceEc-cccCCCCEEEEEEecCCCC
Confidence 46778889999998 999999885 333 47888887776664
No 115
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=39.82 E-value=21 Score=21.58 Aligned_cols=15 Identities=27% Similarity=0.691 Sum_probs=12.2
Q ss_pred eEEEeCcEEEEEEeC
Q 043469 89 SAEFLNGLLQIIIPK 103 (104)
Q Consensus 89 ~A~~~~GiL~I~~pK 103 (104)
.+.+.+|+|+|+++.
T Consensus 30 D~e~~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYSSGVLTLELPS 44 (97)
T ss_pred ccccCCCEEEEEECC
Confidence 567789999999863
No 116
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=39.57 E-value=15 Score=24.12 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=16.3
Q ss_pred CCcccCceeEEEeCcEEEEEEe
Q 043469 81 TNVDKDTISAEFLNGLLQIIIP 102 (104)
Q Consensus 81 ~~vd~~~i~A~~~~GiL~I~~p 102 (104)
+.+..+.--+.|.||+|+|.++
T Consensus 67 e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 67 EEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred hhcCccccccccccceEEEEec
Confidence 4444455567899999999986
No 117
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=37.42 E-value=75 Score=20.17 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=19.8
Q ss_pred CCEEEEEEEcCCCCCCCeEEEEeCCEEEEE
Q 043469 13 GSNYVMTVEIPGVHVNDIRVEVDDRKLTVM 42 (104)
Q Consensus 13 ~~~~~i~v~lPG~~~~di~V~v~~~~L~I~ 42 (104)
.....+-+||-.++++++.+.=+++.|+|.
T Consensus 45 ~g~v~~GiDLs~i~~~~i~~d~~~~~i~I~ 74 (157)
T PF14014_consen 45 PGTVKAGIDLSKIKEEDIEVDEDGKTITIT 74 (157)
T ss_pred EEEEEEEEEhHHCCcceEEEcCCCCEEEEE
Confidence 334445556666666666666588899998
No 118
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=37.29 E-value=66 Score=19.76 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=29.3
Q ss_pred EEEcCCEEEEEEEc-CCCCCCCeE-EEEeCCEEEEEEEEeecc
Q 043469 9 VSELGSNYVMTVEI-PGVHVNDIR-VEVDDRKLTVMAKHSTEC 49 (104)
Q Consensus 9 i~e~~~~~~i~v~l-PG~~~~di~-V~v~~~~L~I~~~~~~~~ 49 (104)
+.+.+++..|.+.+ |+-+.+.|. +.-..++|.|.-...+..
T Consensus 6 ~~~~~~~~~l~V~V~P~a~~~~i~g~~~~~~~Lkv~i~apP~~ 48 (102)
T COG1872 6 VKELDDGVLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVD 48 (102)
T ss_pred HhhcCCceEEEEEECCCCccCcccceecCcceEEEEEecCCCC
Confidence 34668899999999 888888875 444445588876666554
No 119
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=37.10 E-value=30 Score=20.43 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=15.6
Q ss_pred CCCCCeEEEEeCCEEEEEEEEee
Q 043469 25 VHVNDIRVEVDDRKLTVMAKHST 47 (104)
Q Consensus 25 ~~~~di~V~v~~~~L~I~~~~~~ 47 (104)
|+.+.|.+....+.|.|+|+.=.
T Consensus 22 fd~~~I~l~T~~G~L~I~G~~L~ 44 (85)
T TIGR02892 22 FDDEEILLETVMGFLTIKGQELK 44 (85)
T ss_pred ECCCEEEEEeCcEEEEEEcceeE
Confidence 45677777777777777776533
No 120
>COG4456 VagC Virulence-associated protein and related proteins [Function unknown]
Probab=36.20 E-value=64 Score=18.64 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=17.9
Q ss_pred EEcCCCCCCCeEEEEeCCEEEEEEEEe
Q 043469 20 VEIPGVHVNDIRVEVDDRKLTVMAKHS 46 (104)
Q Consensus 20 v~lPG~~~~di~V~v~~~~L~I~~~~~ 46 (104)
+.+|+ +.+.|.-.++.|+|+=...
T Consensus 20 ~~f~~---~~VeI~r~G~~lII~P~~~ 43 (74)
T COG4456 20 FRFPE---DRVEIIREGDRLIIEPLGK 43 (74)
T ss_pred eecCC---cEEEEEEeCCeEEEEeCCC
Confidence 44566 8888888999999984443
No 121
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=34.98 E-value=1e+02 Score=22.36 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=26.5
Q ss_pred EEEeCCEEEEEEEEeecccccccccCCCcccEEE---eeeccccEEEEEECCC
Q 043469 32 VEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHR---REYGGEPYQIVWTLPT 81 (104)
Q Consensus 32 V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~---~e~~~~~f~r~~~lP~ 81 (104)
+.+.++.|+|++.+...... .-.+++... .....|.|+-+++||.
T Consensus 43 v~v~~G~L~I~a~~~~~~~~-----~ytSg~i~T~~k~~f~yG~~EaR~klp~ 90 (295)
T cd02180 43 VTTINGSLRITMDQFRNHGL-----NFRSGMLQSWNKLCFTGGYIEASASLPG 90 (295)
T ss_pred eEecCCeEEEEEEeecCCCC-----CEEEEEEEECCcceeeCCEEEEEEECCC
Confidence 35679999999987642200 011222222 2235678888999995
No 122
>PF14651 Lipocalin_7: Lipocalin / cytosolic fatty-acid binding protein family; PDB: 2F73_A 3B2L_A 3B2J_A 3STN_A 3STK_A 3STM_X 3VG6_A 3VG4_A 3VG5_A 3B2K_A ....
Probab=34.68 E-value=68 Score=20.39 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=19.6
Q ss_pred cccceeeEEEcCCEEEEEEEcCCC
Q 043469 2 EWSPRMNVSELGSNYVMTVEIPGV 25 (104)
Q Consensus 2 ~~~P~~~i~e~~~~~~i~v~lPG~ 25 (104)
++.|.++|.++++.|.+....||-
T Consensus 34 ~~k~v~Ei~q~Gd~ft~t~~~~gg 57 (128)
T PF14651_consen 34 DAKPVTEISQNGDDFTWTTTTPGG 57 (128)
T ss_dssp TS-EEEEEEEETTEEEEEEEETTT
T ss_pred CCCceEEEEEeCCeEEEEEEecCC
Confidence 467889999999999998888874
No 123
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=34.54 E-value=1.5e+02 Score=20.14 Aligned_cols=54 Identities=11% Similarity=0.045 Sum_probs=29.4
Q ss_pred CCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEE---eeeccccEEEEEECCCC
Q 043469 25 VHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHR---REYGGEPYQIVWTLPTN 82 (104)
Q Consensus 25 ~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~---~e~~~~~f~r~~~lP~~ 82 (104)
..++++. +.++.|.|++.+........ ..-..+.... ....+|.|+-++++|..
T Consensus 35 ~~~~nv~--v~~G~L~i~~~~~~~~~~~~--~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 35 YRPENAY--VEDGNLVITARKEPDKGGDG--YPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred CCCCCeE--EECCEEEEEEEECCCCCCCc--ccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 4556654 55999999988765320000 0011122222 12346888889999853
No 124
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=34.28 E-value=94 Score=24.45 Aligned_cols=39 Identities=15% Similarity=0.360 Sum_probs=32.8
Q ss_pred cceeeEEEcCCEEEEEEEcCC-CCCCCeEEEEeCCEEEEE
Q 043469 4 SPRMNVSELGSNYVMTVEIPG-VHVNDIRVEVDDRKLTVM 42 (104)
Q Consensus 4 ~P~~~i~e~~~~~~i~v~lPG-~~~~di~V~v~~~~L~I~ 42 (104)
.|.+-+..+++...+++.+|- .+.++|.|+..-+.|.+.
T Consensus 289 ~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~ 328 (596)
T KOG4379|consen 289 PPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVK 328 (596)
T ss_pred CccceeeeccCcceEEEecccccccceEEEEecCceEEEE
Confidence 577999999999999999997 777899999876665554
No 125
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=34.00 E-value=1.1e+02 Score=21.31 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=12.3
Q ss_pred EEEe-CCEEEEEEEEee
Q 043469 32 VEVD-DRKLTVMAKHST 47 (104)
Q Consensus 32 V~v~-~~~L~I~~~~~~ 47 (104)
+.++ ++.|+|++.+..
T Consensus 48 ~~v~~dG~L~I~a~~~~ 64 (259)
T cd02182 48 VQLSGNGTLQITPLRDG 64 (259)
T ss_pred EEEcCCCeEEEEEEecC
Confidence 4556 899999998764
No 126
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=33.32 E-value=60 Score=19.03 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=14.3
Q ss_pred ccceeeEEEcCCEEEEEEEcCCCC
Q 043469 3 WSPRMNVSELGSNYVMTVEIPGVH 26 (104)
Q Consensus 3 ~~P~~~i~e~~~~~~i~v~lPG~~ 26 (104)
-.|.+.+...++.|+-++.||.-.
T Consensus 20 ~~P~~~~~~~~~~~~c~v~LP~~~ 43 (90)
T PF03368_consen 20 LKPEFEIEKIGSGFICTVILPINS 43 (90)
T ss_dssp SS-EEEEEE--G-EEEEEE--TT-
T ss_pred CCceEEEEEcCCcEEEEEECCCCC
Confidence 368899999999999999999533
No 127
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=32.82 E-value=1.4e+02 Score=19.87 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=17.3
Q ss_pred CCCCeEEEEeCCEEEEEEEEeecc
Q 043469 26 HVNDIRVEVDDRKLTVMAKHSTEC 49 (104)
Q Consensus 26 ~~~di~V~v~~~~L~I~~~~~~~~ 49 (104)
.++++.++...+.+.|+|......
T Consensus 129 ~~~~i~~d~~~~~V~V~G~l~t~~ 152 (187)
T PF05309_consen 129 YPKSIEVDPETLTVFVTGTLKTWI 152 (187)
T ss_pred EEeEEEEecCCCEEEEEEEEEEEE
Confidence 346677777888888888876543
No 128
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=32.53 E-value=62 Score=20.89 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=23.8
Q ss_pred eEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEE
Q 043469 8 NVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAK 44 (104)
Q Consensus 8 ~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~ 44 (104)
.+... +.+.+++..|.--.+.+.++++++.|.|+..
T Consensus 14 ~l~~g-~~~~v~v~~~~~l~~~i~~~v~~g~L~I~~~ 49 (181)
T PF10988_consen 14 ELVQG-DSPSVEVEADENLLDRIKVEVKDGTLKISYK 49 (181)
T ss_dssp EEEE--SS-EEEEEEEHHHHCCEEEEEETTEEEEEE-
T ss_pred EEEEC-CCcEEEEEEChhhcceEEEEEECCEEEEEEC
Confidence 33443 4557777776544578899999999999876
No 129
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=32.23 E-value=16 Score=27.88 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=22.8
Q ss_pred EeeeccccEEEEEECCCCcccCceeEEE
Q 043469 65 RREYGGEPYQIVWTLPTNVDKDTISAEF 92 (104)
Q Consensus 65 ~~e~~~~~f~r~~~lP~~vd~~~i~A~~ 92 (104)
....+.|..++.|.||++++++-.+|+|
T Consensus 129 sT~lSvGGi~QQFSlpEnIqmSLF~a~F 156 (509)
T KOG2853|consen 129 STMLSVGGICQQFSLPENIQMSLFTAEF 156 (509)
T ss_pred ceeeeecceeeecccchhhhhhhHHHHH
Confidence 3345678899999999999998877765
No 130
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=32.23 E-value=1.5e+02 Score=19.36 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=25.3
Q ss_pred CCEEEEEEEcCCC---CCCCeEEEE-eCCEEEEEEEEe
Q 043469 13 GSNYVMTVEIPGV---HVNDIRVEV-DDRKLTVMAKHS 46 (104)
Q Consensus 13 ~~~~~i~v~lPG~---~~~di~V~v-~~~~L~I~~~~~ 46 (104)
.+.|++.+.+|.+ ....+.|.+ .++.+.=+...+
T Consensus 48 ~N~yt~~~~aPd~~~~pag~V~v~v~~~g~~~~~~~ik 85 (142)
T PF14545_consen 48 ENPYTLQFKAPDFCLEPAGSVNVRVYCDGVSLGTRQIK 85 (142)
T ss_pred ECCEEEEEECchhcCCCCceEEEEEEECCEEEEEEeEE
Confidence 3579999999999 888999999 465554444443
No 131
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=32.12 E-value=47 Score=18.88 Aligned_cols=22 Identities=18% Similarity=0.691 Sum_probs=15.1
Q ss_pred cccceeeEEEcCCEEEEEEEcC
Q 043469 2 EWSPRMNVSELGSNYVMTVEIP 23 (104)
Q Consensus 2 ~~~P~~~i~e~~~~~~i~v~lP 23 (104)
+|.+++.+...++.+.+++.||
T Consensus 23 ~W~~~~pm~~~~~~~~~~~~L~ 44 (79)
T cd02859 23 NWKKKIPLEKSGKGFSATLRLP 44 (79)
T ss_pred CCCccccceECCCCcEEEEEcC
Confidence 4666666666666677777776
No 132
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=31.80 E-value=35 Score=20.87 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=14.9
Q ss_pred EEEEEEEcCC--CCCCCeEEEEe
Q 043469 15 NYVMTVEIPG--VHVNDIRVEVD 35 (104)
Q Consensus 15 ~~~i~v~lPG--~~~~di~V~v~ 35 (104)
...=.++||| ++-++++|.|-
T Consensus 42 ~~~e~feLPgaDls~EEL~V~Vi 64 (99)
T PF13834_consen 42 DAAESFELPGADLSGEELSVRVI 64 (99)
T ss_pred cccccccCCCccccCCeEEEEEe
Confidence 3444588998 56678888884
No 133
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=31.37 E-value=1.5e+02 Score=20.12 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=17.1
Q ss_pred CCCCeEEEEeCCEEEEEEEEeecc
Q 043469 26 HVNDIRVEVDDRKLTVMAKHSTEC 49 (104)
Q Consensus 26 ~~~di~V~v~~~~L~I~~~~~~~~ 49 (104)
.+..+.+....+.+.|+|..+...
T Consensus 129 ~~~~i~v~~~~~~V~V~Gtlkt~v 152 (188)
T PRK13726 129 YQTSVRVWPQYGRVDIRGVLKTWI 152 (188)
T ss_pred EeeeEEEccCCCEEEEEEEEEEEE
Confidence 345666666788888888887654
No 134
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=30.31 E-value=92 Score=17.35 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=13.8
Q ss_pred ceeEEEeCcEEEEEEeCC
Q 043469 87 TISAEFLNGLLQIIIPKL 104 (104)
Q Consensus 87 ~i~A~~~~GiL~I~~pK~ 104 (104)
.|+...+||.++|.=||.
T Consensus 29 ~ItGhVknG~mri~gpkt 46 (62)
T PF08300_consen 29 VITGHVKNGSMRIYGPKT 46 (62)
T ss_dssp EEEEEEETTEEEEE--TT
T ss_pred EEeEEEeCCeEEEecChh
Confidence 578999999999988873
No 135
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=30.21 E-value=37 Score=22.87 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=10.4
Q ss_pred eEEEeCcEEEEEEeC
Q 043469 89 SAEFLNGLLQIIIPK 103 (104)
Q Consensus 89 ~A~~~~GiL~I~~pK 103 (104)
-|.++||.|+|.+|.
T Consensus 53 LAqW~dnkL~i~~P~ 67 (180)
T PF08918_consen 53 LAQWEDNKLTIEVPP 67 (180)
T ss_dssp HEEEETTCEEE---T
T ss_pred hhheeCCeeEEeCCC
Confidence 388999999999985
No 136
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=29.95 E-value=1.8e+02 Score=19.70 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=30.2
Q ss_pred cCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEeecc
Q 043469 12 LGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTEC 49 (104)
Q Consensus 12 ~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~~~ 49 (104)
.++.|+=++.||--..+..++.+.|+.|.|...+..+.
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeCceEEEEEeecCCC
Confidence 34446678889866677889999999999998887665
No 137
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=29.37 E-value=1.6e+02 Score=19.37 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=27.9
Q ss_pred CCCCeEEEEeC-CEEEEEEEEeecccccccccCCCcccEEE--eeeccccEEEEEECCCC
Q 043469 26 HVNDIRVEVDD-RKLTVMAKHSTECWKVAGCSNGSISAYHR--REYGGEPYQIVWTLPTN 82 (104)
Q Consensus 26 ~~~di~V~v~~-~~L~I~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~f~r~~~lP~~ 82 (104)
.+++ |.+.+ +.|.|++.+..... ....+.... .....|.|+-++++|..
T Consensus 28 ~~~n--v~~~~~G~L~l~~~~~~~~~------~~~sg~i~s~~~~~~yG~~ear~k~~~~ 79 (210)
T cd00413 28 SPNN--VYVENDGGLTLRTDRDQTDG------PYSSAEIDSQKNNYTYGYYEARAKLAGG 79 (210)
T ss_pred CccC--EEEeCCCeEEEEEEecCCCC------ceEeEEEEeCcceEeeEEEEEEEEcCCC
Confidence 4454 45555 89999988764200 011122222 23456889999999864
No 138
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=29.11 E-value=74 Score=18.50 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=14.3
Q ss_pred cCceeEEEeCcEEEEEEe
Q 043469 85 KDTISAEFLNGLLQIIIP 102 (104)
Q Consensus 85 ~~~i~A~~~~GiL~I~~p 102 (104)
.+.++++|+||-|.+..-
T Consensus 7 Td~V~gkf~ng~l~LY~~ 24 (76)
T PF10830_consen 7 TDKVTGKFKNGGLELYHD 24 (76)
T ss_pred ecceEEEecCCcEEEEec
Confidence 467899999999887654
No 139
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=28.64 E-value=1.8e+02 Score=19.30 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCCCCCeEEEEeCCEEEEEEEEeecc
Q 043469 24 GVHVNDIRVEVDDRKLTVMAKHSTEC 49 (104)
Q Consensus 24 G~~~~di~V~v~~~~L~I~~~~~~~~ 49 (104)
+++-.++++..+++.|.|+|...-.-
T Consensus 29 ~~D~S~l~~~~d~~~i~vsGn~t~~w 54 (164)
T smart00675 29 AFDISNLVVDMDPDGLHISGNITVIW 54 (164)
T ss_pred ccchhheEEEEcCCeEEEeeeEEEEE
Confidence 46778999999999999999987654
No 140
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=28.41 E-value=1.8e+02 Score=19.24 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=17.2
Q ss_pred ECCCCcccCcee-EEEeCcEEEEEEeCC
Q 043469 78 TLPTNVDKDTIS-AEFLNGLLQIIIPKL 104 (104)
Q Consensus 78 ~lP~~vd~~~i~-A~~~~GiL~I~~pK~ 104 (104)
.=|+.|.+...+ +...+|.|+++||+.
T Consensus 161 ~~p~~V~p~~~~~~~~~~~~~~~~lp~~ 188 (189)
T smart00813 161 EDPNKVVPVTSTLAAVEGGTLTVTLPPH 188 (189)
T ss_pred CCCCeeeccccCCceeeCCEEEEEeCCC
Confidence 345555555433 345678999999973
No 141
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=27.70 E-value=96 Score=18.01 Aligned_cols=32 Identities=6% Similarity=0.159 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCCCeEEEE-eCCEEEEEEEEee
Q 043469 16 YVMTVEIPGVHVNDIRVEV-DDRKLTVMAKHST 47 (104)
Q Consensus 16 ~~i~v~lPG~~~~di~V~v-~~~~L~I~~~~~~ 47 (104)
|.+++.=+.-..+-++|+- .++.|.|+|.-..
T Consensus 20 f~~~~~~~~~~~d~F~l~~~~~gki~I~G~s~v 52 (86)
T PF12971_consen 20 FTFELIPSSNGKDVFELSSADNGKIVIRGNSGV 52 (86)
T ss_dssp EEEEE---BTTBEEEEEEE-SSS-EEEEESSHH
T ss_pred EEEEEecCCCCCCEEEEEeCCCCeEEEEeCCHH
Confidence 5555544444778889998 8999999987543
No 142
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=27.16 E-value=61 Score=20.07 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=12.3
Q ss_pred eeEEEeCcEEEEEEeC
Q 043469 88 ISAEFLNGLLQIIIPK 103 (104)
Q Consensus 88 i~A~~~~GiL~I~~pK 103 (104)
+-+.+.+|+|+|+++.
T Consensus 30 ~D~d~qg~VlTl~f~n 45 (106)
T COG1965 30 IDCEIQGGVLTLTFDN 45 (106)
T ss_pred cceecCCCEEEEEECC
Confidence 5567779999998864
No 143
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=26.54 E-value=1.8e+02 Score=18.72 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=11.5
Q ss_pred ceeeEEEcCCEEEEEEEcCC
Q 043469 5 PRMNVSELGSNYVMTVEIPG 24 (104)
Q Consensus 5 P~~~i~e~~~~~~i~v~lPG 24 (104)
|.+.|...++.|+--+-+||
T Consensus 27 ~~lKilS~Dgtf~Ni~~~~~ 46 (133)
T PF14869_consen 27 NVLKILSDDGTFVNITMIPK 46 (133)
T ss_pred ccEEEEcCCCcEEEEEEeCC
Confidence 45666666666655444444
No 144
>PRK11023 outer membrane lipoprotein; Provisional
Probab=25.90 E-value=1.3e+02 Score=20.23 Aligned_cols=25 Identities=8% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCCCCCCeEEEEeCCEEEEEEEEee
Q 043469 23 PGVHVNDIRVEVDDRKLTVMAKHST 47 (104)
Q Consensus 23 PG~~~~di~V~v~~~~L~I~~~~~~ 47 (104)
++++..+|+|.+.++.+++.|....
T Consensus 140 ~~v~~~~I~V~t~~G~V~L~G~v~~ 164 (191)
T PRK11023 140 DSVKSSNVKVTTENGEVFLLGLVTQ 164 (191)
T ss_pred CCCCcceEEEEEECcEEEEEEEeCH
Confidence 6778889999999999999999964
No 145
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=24.62 E-value=84 Score=17.63 Aligned_cols=33 Identities=9% Similarity=0.279 Sum_probs=20.8
Q ss_pred EEEEEEEcCCCCCCCeEEEEeCCEEEEEEEEee
Q 043469 15 NYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHST 47 (104)
Q Consensus 15 ~~~i~v~lPG~~~~di~V~v~~~~L~I~~~~~~ 47 (104)
...|.++.|.+.+=.+.|.+.++.|.|.-....
T Consensus 14 ~~~l~L~p~~LG~v~v~l~~~~~~l~v~~~~~~ 46 (85)
T PF02120_consen 14 ELSLQLDPPELGSVEVKLRLQGGNLSVQFTAEN 46 (85)
T ss_dssp EEEE--SSGGG--EEEEEEEETTEEEEEEE--S
T ss_pred EEEEEEcccccCcEEEEEEEeCCEEEEEEEECC
Confidence 566677778888888888889998877755543
No 146
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=24.48 E-value=74 Score=19.47 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=11.4
Q ss_pred eeEEEeCcEEEEEEe
Q 043469 88 ISAEFLNGLLQIIIP 102 (104)
Q Consensus 88 i~A~~~~GiL~I~~p 102 (104)
+.+.+.+|+|+|+.+
T Consensus 30 ~D~e~~~gVLtl~~~ 44 (103)
T PRK01379 30 IDVDLQGDILNLDTD 44 (103)
T ss_pred eeeeccCCEEEEEeC
Confidence 666778888888754
No 147
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=24.12 E-value=2.8e+02 Score=19.89 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=14.2
Q ss_pred EEEEeCCEEEEEEEEee
Q 043469 31 RVEVDDRKLTVMAKHST 47 (104)
Q Consensus 31 ~V~v~~~~L~I~~~~~~ 47 (104)
.+.++++.|+|++.+..
T Consensus 45 Nv~v~dG~L~i~a~~e~ 61 (269)
T cd02177 45 NVVISNGILELTMRRNA 61 (269)
T ss_pred ceEEeCCEEEEEEEecc
Confidence 55778999999998874
No 148
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=24.07 E-value=2.3e+02 Score=19.03 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=19.8
Q ss_pred ccceeeEEEcCCEEEEEEEcCCC
Q 043469 3 WSPRMNVSELGSNYVMTVEIPGV 25 (104)
Q Consensus 3 ~~P~~~i~e~~~~~~i~v~lPG~ 25 (104)
|.|.++|...++.-++.+.-|..
T Consensus 128 ~~~~f~I~d~~~~~~~~I~gp~~ 150 (221)
T PF03803_consen 128 CRPNFDIFDANGNPIFTIKGPCC 150 (221)
T ss_pred cceEEEEEECCCceEEEEeCCcc
Confidence 57889999999988888888865
No 149
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=23.77 E-value=1.6e+02 Score=16.91 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=23.1
Q ss_pred CCEEEEEEEc-CCCCCCCeEEEEeC-CEEEEEEEEeecc
Q 043469 13 GSNYVMTVEI-PGVHVNDIRVEVDD-RKLTVMAKHSTEC 49 (104)
Q Consensus 13 ~~~~~i~v~l-PG~~~~di~V~v~~-~~L~I~~~~~~~~ 49 (104)
++.+.|.+.+ ||.+++.| ..+.+ +.|.|.-...+..
T Consensus 1 ~~~~~l~v~V~P~ak~~~i-~~~~~~~~l~i~v~app~~ 38 (77)
T PF02594_consen 1 GDGVILSVRVKPGAKRNAI-VGVEGDGALKIRVTAPPVD 38 (77)
T ss_dssp TTEEEEEEECEBSSSS-EE-EEE-TTT-EEEEBSTTCCC
T ss_pred CCeEEEEEEEEeCCCcccc-ccccCceEEEEEEecCCCc
Confidence 4678888888 99888776 36666 5888875554443
No 150
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=23.71 E-value=81 Score=16.95 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=14.2
Q ss_pred EEcCCCCCCCeEEEEeCC
Q 043469 20 VEIPGVHVNDIRVEVDDR 37 (104)
Q Consensus 20 v~lPG~~~~di~V~v~~~ 37 (104)
-+-||.+..|+.|++.++
T Consensus 32 qeqpg~edQdv~ISf~~~ 49 (52)
T PF00879_consen 32 QEQPGAEDQDVSISFAGD 49 (52)
T ss_pred hhccCccCCcEEEEecCC
Confidence 345899999999998654
No 151
>PRK09798 antitoxin MazE; Provisional
Probab=23.52 E-value=1.1e+02 Score=17.75 Aligned_cols=23 Identities=13% Similarity=0.473 Sum_probs=17.9
Q ss_pred CCCC-CCeEEEEeCCEEEEEEEEe
Q 043469 24 GVHV-NDIRVEVDDRKLTVMAKHS 46 (104)
Q Consensus 24 G~~~-~di~V~v~~~~L~I~~~~~ 46 (104)
|+.. +.++|++.++.|+|+-.+.
T Consensus 26 ~l~~g~~vei~v~~~~iiI~p~~~ 49 (82)
T PRK09798 26 NLNIDDEVKIDLVDGKLIIEPVRK 49 (82)
T ss_pred CCCCCCEEEEEEECCEEEEEECCC
Confidence 5543 7899999999999986543
No 152
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.97 E-value=46 Score=17.49 Aligned_cols=22 Identities=27% Similarity=0.685 Sum_probs=15.6
Q ss_pred cCCCCCCCeEEEEeCCEEEEEEEE
Q 043469 22 IPGVHVNDIRVEVDDRKLTVMAKH 45 (104)
Q Consensus 22 lPG~~~~di~V~v~~~~L~I~~~~ 45 (104)
+||+ .++.+.+..+.++|.+..
T Consensus 23 ~~GV--~~v~vd~~~~~v~v~~~~ 44 (62)
T PF00403_consen 23 LPGV--KSVKVDLETKTVTVTYDP 44 (62)
T ss_dssp STTE--EEEEEETTTTEEEEEEST
T ss_pred CCCC--cEEEEECCCCEEEEEEec
Confidence 4665 566777778899998643
No 153
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=21.93 E-value=1.2e+02 Score=25.33 Aligned_cols=26 Identities=12% Similarity=0.376 Sum_probs=20.0
Q ss_pred ECC--CCcccCceeEEEeCcEEEEEEeC
Q 043469 78 TLP--TNVDKDTISAEFLNGLLQIIIPK 103 (104)
Q Consensus 78 ~lP--~~vd~~~i~A~~~~GiL~I~~pK 103 (104)
..| +.+|-..+.-.|++|+|++.+|-
T Consensus 737 ~~P~~c~v~~~~~~f~y~~g~~~~~~~~ 764 (777)
T PLN02711 737 EKPRSCKIDGEEVEFGYEDCMVVVQVPW 764 (777)
T ss_pred CCCeEEEECCEEeeeEecCCEEEEEecC
Confidence 345 66666677778889999999984
No 154
>PRK13605 endoribonuclease SymE; Provisional
Probab=21.81 E-value=1.5e+02 Score=18.56 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=20.8
Q ss_pred CCCCC-CCeEEEEeCCEEEEEEEEeec
Q 043469 23 PGVHV-NDIRVEVDDRKLTVMAKHSTE 48 (104)
Q Consensus 23 PG~~~-~di~V~v~~~~L~I~~~~~~~ 48 (104)
.||.- ..|.|.+.+|.|+|++.....
T Consensus 50 AGF~tG~~V~V~V~~G~LVIt~~~~~~ 76 (113)
T PRK13605 50 AGFATGTAVDVRVMEGCIVLTAQPPAA 76 (113)
T ss_pred hCCCCCCeEEEEEeCCEEEEEeCCCCc
Confidence 56666 479999999999999877643
No 155
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=21.46 E-value=1.8e+02 Score=16.77 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=27.7
Q ss_pred eEEEcCCEEEEEEEcC-----CCCCCCeEEEEeCCEEEEEEEE
Q 043469 8 NVSELGSNYVMTVEIP-----GVHVNDIRVEVDDRKLTVMAKH 45 (104)
Q Consensus 8 ~i~e~~~~~~i~v~lP-----G~~~~di~V~v~~~~L~I~~~~ 45 (104)
.+...++.+.+++.+| .+... =+|.+++=.|+|....
T Consensus 12 ~i~~~~~~~~~~i~~~~~~~~~~~~g-~SIavnGvcLTV~~~~ 53 (85)
T PF00677_consen 12 SIEKNGDSQRLRIEIPDKILSDLKIG-GSIAVNGVCLTVTDIN 53 (85)
T ss_dssp EEEEESSEEEEEEEESTGGGGTG-TT-SEEEETTEEEEEEEEE
T ss_pred EEEECCCCEEEEEEcCHHHHhhCccC-cEEEECCeeeEEEEec
Confidence 5677889999999998 34444 6788888889987544
No 156
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=21.26 E-value=1.6e+02 Score=16.07 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=15.8
Q ss_pred CEEEEEEEcCCCCCCCe-EEEEe
Q 043469 14 SNYVMTVEIPGVHVNDI-RVEVD 35 (104)
Q Consensus 14 ~~~~i~v~lPG~~~~di-~V~v~ 35 (104)
+.|.|.+..||+..... .|.+.
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~ 70 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVT 70 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEES
T ss_pred EeEEEEEEECCcceEEEEEEEEe
Confidence 57888888888887776 47765
No 157
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=21.24 E-value=2.1e+02 Score=20.67 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=30.3
Q ss_pred CCCCCeEEEEeCCEEEEEEEEeecccccccccCCCcccEEEeeeccccEEEEEECCCCccc
Q 043469 25 VHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQIVWTLPTNVDK 85 (104)
Q Consensus 25 ~~~~di~V~v~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~lP~~vd~ 85 (104)
++.|.|.+ -.++.+.|+-+..... ......++-. ..|.+.+.+.+|....+
T Consensus 85 ~D~Egi~~-~~~g~~~is~E~~~~~--------~~~p~I~~~~-~~G~~~~~~~vP~~~~~ 135 (326)
T PF13449_consen 85 LDPEGIAV-PPDGSFWISSEGGRTG--------GIPPRIRRFD-LDGRVIRRFPVPAAFLP 135 (326)
T ss_pred CChhHeEE-ecCCCEEEEeCCccCC--------CCCCEEEEEC-CCCcccceEcccccccc
Confidence 46777777 6788888886655211 1112222222 33788888889977643
No 158
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=21.06 E-value=1.5e+02 Score=15.84 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=19.0
Q ss_pred ceeeEEEcCCEEEEEEEcCCCCCCCeEEEEeCCEEEEEE
Q 043469 5 PRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMA 43 (104)
Q Consensus 5 P~~~i~e~~~~~~i~v~lPG~~~~di~V~v~~~~L~I~~ 43 (104)
|.+.|+..+.. .+|......+.+...++.|.|..
T Consensus 13 P~v~W~k~~~~-----~~~~~~~~~~~~~~~~~~L~I~~ 46 (75)
T cd05763 13 PQIAWQKDGGT-----DFPAARERRMHVMPEDDVFFIVD 46 (75)
T ss_pred CEEEEEeCCCc-----cCCcccccceEEecCCCEEEEee
Confidence 45788776653 22433333444444567887764
No 159
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=20.94 E-value=1.2e+02 Score=16.73 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=14.7
Q ss_pred CCCeEEEEeCCEEEEEEEE
Q 043469 27 VNDIRVEVDDRKLTVMAKH 45 (104)
Q Consensus 27 ~~di~V~v~~~~L~I~~~~ 45 (104)
++.++|+++++.+.+.|..
T Consensus 2 P~gV~v~~~~~~i~v~G~~ 20 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPK 20 (77)
T ss_dssp STTCEEEEETTEEEEESSS
T ss_pred CCcEEEEEeCcEEEEECCC
Confidence 4678889989888887544
No 160
>PF05258 DUF721: Protein of unknown function (DUF721); InterPro: IPR007922 This family contains several actinomycete proteins of unknown function, and related sequences from other species.
Probab=20.73 E-value=1.1e+02 Score=17.10 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=9.9
Q ss_pred EEEeCcEEEEEEe
Q 043469 90 AEFLNGLLQIIIP 102 (104)
Q Consensus 90 A~~~~GiL~I~~p 102 (104)
..+++|+|.|.+.
T Consensus 44 ~~i~~g~L~i~v~ 56 (89)
T PF05258_consen 44 VSIKDGTLVIEVD 56 (89)
T ss_pred EEEECCEEEEEEC
Confidence 4568999999763
No 161
>PF07122 VLPT: Variable length PCR target protein (VLPT); InterPro: IPR009805 This entry represents a 29 residue repeated sequence which seem to be specific to the Ehrlichia chaffeensis variable length PCR target (VLPT) protein. E. chaffeensis is a tick-transmitted rickettsial agent and is responsible for human monocytic ehrlichiosis (HME). The function of this family is unknown [].
Probab=20.54 E-value=32 Score=16.19 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=11.8
Q ss_pred EEEEEcCCCCCCCeEE
Q 043469 17 VMTVEIPGVHVNDIRV 32 (104)
Q Consensus 17 ~i~v~lPG~~~~di~V 32 (104)
...++||+..++.+.+
T Consensus 13 ss~vELp~pskE~vQL 28 (30)
T PF07122_consen 13 SSSVELPSPSKEEVQL 28 (30)
T ss_pred ccceecCCchHhhhcc
Confidence 3567889988887664
No 162
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=20.30 E-value=66 Score=23.77 Aligned_cols=15 Identities=20% Similarity=0.527 Sum_probs=12.3
Q ss_pred cCceeEEEeCcEEEE
Q 043469 85 KDTISAEFLNGLLQI 99 (104)
Q Consensus 85 ~~~i~A~~~~GiL~I 99 (104)
-.+-||.|+||||+|
T Consensus 345 k~~wk~~lk~g~~~~ 359 (375)
T PF03153_consen 345 KNKWKCTLKDGIMHI 359 (375)
T ss_dssp TTEEEEEEEEEEEEE
T ss_pred cceeEEEeeeeEEEE
Confidence 345789999999987
Done!