RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043469
(104 letters)
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 86.0 bits (214), Expect = 9e-24
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 2 EWSPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSIS 61
+W PR+++ E +++V+ ++PG+ + I V++D L++ + +E S+
Sbjct: 2 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSE-------SSTETE 54
Query: 62 AYHRRE--YGGEPYQIVWTLPTNVDKDTISAEFLNGLLQIIIPK 103
+ R E YG + + LP + D D I+A NG+L+I IPK
Sbjct: 55 RFSRIERRYGS--FHRRFALPDSADADGITAAGRNGVLEIRIPK 96
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 81.3 bits (201), Expect = 3e-21
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 2 EWSPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSIS 61
+ +++ E + + +PGV+ DI + L + AK S
Sbjct: 54 KGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPL-------MITESE 106
Query: 62 AYHRRE---YGGEPYQIVWTLPTNVDKDTISAEFLNGLLQIIIPK 103
E LP V ++ SA+F NG+L +I+PK
Sbjct: 107 RIIYSEIPEEEE--IYRTIKLPATVKEENASAKFENGVLSVILPK 149
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 76.6 bits (189), Expect = 2e-19
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 3 WSPRMNVSELGSNYVMTVEIPGVHVNDIRVEV-DDRKLTVMAKHSTECWKVAGCSNGSIS 61
+ RM+ E +V ++PGV +++VEV D L V + + E
Sbjct: 42 ANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKE-------KEDKND 94
Query: 62 AYHRRE--YGGEPYQIVWTLPTNVDKDTISAEFLNGLLQIIIPK 103
+HR E G + + L + + + A NG+L + +PK
Sbjct: 95 KWHRVERSSGK--FVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 136
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 71.9 bits (177), Expect = 5e-18
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 3 WSPRMNVSELGSNYVMTVEIPGVHVNDIRVEVD-DRKLTVMAKHSTECWKVAGCSNGSIS 61
P +++ E G V+ ++ G + I+ V +L + A+ G
Sbjct: 23 VYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREIT-------EPGVK- 74
Query: 62 AYHRREYGGEPYQIVWTLPTNVDKDT-ISAEFLNGLLQIIIPK 103
Y + + V LP NV KD IS ++ NG+L I IP
Sbjct: 75 -YLTQRPKY--VRKVIRLPYNVAKDAEISGKYENGVLTIRIPI 114
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 58.0 bits (140), Expect = 5e-12
Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 15/101 (14%)
Query: 4 SPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAY 63
+ + + + +++ +++V+V + V KH + +G IS
Sbjct: 63 TGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDE-----HGFISRE 117
Query: 64 HRREYGGEPYQIVWTLPTNVDKDTISAEFL-NGLLQIIIPK 103
R+Y +P +VD TI++ +G+L + P+
Sbjct: 118 FHRKY---------RIPADVDPLTITSSLSSDGVLTVNGPR 149
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 54.0 bits (130), Expect = 2e-11
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 15 NYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYGGEPYQ 74
+ + +++ +++V+V + V KH + +G IS R+Y
Sbjct: 7 RFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDE-----HGFISREFHRKY------ 55
Query: 75 IVWTLPTNVDKDTISAEFL-NGLLQIIIPK 103
+P +VD TI++ +G+L + P+
Sbjct: 56 ---RIPADVDPLTITSSMSSDGVLTVNGPR 82
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 54.5 bits (131), Expect = 3e-11
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 15/102 (14%)
Query: 4 SPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAY 63
S V +V+ +++ D+ V+V + + + KH+
Sbjct: 2 SGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQ-------------- 47
Query: 64 HRREYGGEPYQIVWTLPTNVDKDTISAEFL-NGLLQIIIPKL 104
Y + + LP+NVD+ +S +G+L PK+
Sbjct: 48 DDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKI 89
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 54.0 bits (130), Expect = 3e-11
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 15/97 (15%)
Query: 8 NVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRRE 67
V + + +++ +I V+V + V A+H + +G I+ R
Sbjct: 5 QVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDE-----HGFIAREFHRR 59
Query: 68 YGGEPYQIVWTLPTNVDKDTISAEFL-NGLLQIIIPK 103
Y LP VD +++ G+L I
Sbjct: 60 Y---------RLPPGVDPAAVTSALSPEGVLSIQATP 87
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 53.1 bits (128), Expect = 6e-11
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 10 SELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREYG 69
S + +++++ +++ V+ D + + KH+ + +G IS R+Y
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDE-----HGYISRCFTRKY- 56
Query: 70 GEPYQIVWTLPTNVDKDTISAEFL-NGLLQIIIPK 103
TLP VD +S+ G L + P
Sbjct: 57 --------TLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 50.2 bits (119), Expect = 9e-09
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 20/106 (18%)
Query: 2 EWSPRMNVSELGSN----YVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSN 57
E + E+G + + + + +I ++ D KL V A+ S C +
Sbjct: 96 ELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVA------CGD 149
Query: 58 GSISAYHRREYGGEPYQIVWTLPTNVDKDTISAEFL-NGLLQIIIP 102
++S R LP +VD++ I A + +L I P
Sbjct: 150 AAMSESVGRSI---------PLPPSVDRNHIQATITTDDVLVIEAP 186
Score = 47.1 bits (111), Expect = 1e-07
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 14/105 (13%)
Query: 3 WSPRMNVSELGSNYVMTVEI---PGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGS 59
V+ + + +E+ P D++V K+ V E
Sbjct: 220 KEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASH--- 276
Query: 60 ISAYHRREYGGEPYQIVWTLPTNVDKDTISAEFLNGLLQIIIPKL 104
RE+ + P VD AE ++GL+ + P
Sbjct: 277 ---SEHREF-----YKAFVTPEVVDASKTQAEIVDGLMVVEAPLF 313
>1wjt_A Transcription elongation factor S-II protein 3; four-helix
bundle, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: a.48.3.1
Length = 103
Score = 25.0 bits (54), Expect = 3.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 24 GVHVNDIRVEVDDRKLTVMAKHSTECWK 51
GV VN +R D+++ +AK + WK
Sbjct: 56 GVAVNGVRKHCSDKEVVSLAKVLIKNWK 83
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 25.2 bits (56), Expect = 4.7
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 7 MNVSELGSNYVMTVEIPGVHVNDIRVEVDDR 37
MN+++ S YV + + IRV+ D R
Sbjct: 545 MNITDSQSEYVNELT-QKLSNAGIRVKADLR 574
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic
aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo
sapiens} PDB: 2xiq_A* 3bic_A
Length = 762
Score = 25.1 bits (55), Expect = 6.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 59 SISAYHRREYGGEPYQ 74
SIS YH +E G +
Sbjct: 250 SISGYHMQEAGADAIL 265
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 24.8 bits (54), Expect = 7.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 79 LPTNVDKDTISAEFLNGLLQ 98
L T K +I AE L GLLQ
Sbjct: 480 LITGAGKGSIGAEVLQGLLQ 499
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A*
3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Length = 727
Score = 24.7 bits (54), Expect = 8.5
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 59 SISAYHRREYGGEPYQ 74
SIS YH +E G
Sbjct: 238 SISGYHMQEAGATADI 253
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
adenylate analog, deletion mutant, ligase; HET: TSB;
1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
1evk_A* 1fyf_A* 1kog_A*
Length = 401
Score = 24.5 bits (54), Expect = 9.6
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 7 MNVSELGSNYVMTVEIPGVHVNDIRVEVDDR 37
MN+++ S YV + + IRV+ D R
Sbjct: 304 MNITDSQSEYVNELT-QKLSNAGIRVKADLR 333
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.415
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,602,667
Number of extensions: 81761
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 20
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)