RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 043469
         (104 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 66.2 bits (161), Expect = 3e-16
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 2   EWSPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSIS 61
           +    +++ E   +  +   +PGV+  DI +      L + AK S      +        
Sbjct: 8   KGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESER------ 61

Query: 62  AYHRREYGGEPYQIVWTLPTNVDKDTISAEFLNGLLQIIIPK 103
             +      E       LP  V ++  SA+F NG+L +I+PK
Sbjct: 62  IIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPK 103


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 65.6 bits (159), Expect = 1e-15
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 3   WSPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSISA 62
            + RM+  E    +V   ++PGV   +++VEV+D  + V++   T+              
Sbjct: 41  ANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEK------EDKNDK 94

Query: 63  YHRREYGGEPYQIVWTLPTNVDKDTISAEFLNGLLQIIIPKL 104
           +HR E     +   + L  +   + + A   NG+L + +PK 
Sbjct: 95  WHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA 136


>d1ha8a_ g.58.1.1 (A:) Pheromone ER-23 {Euplotes raikovi [TaxId:
          5938]}
          Length = 51

 Score = 24.6 bits (53), Expect = 1.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 53 AGCSNGSISAYHRREYGG 70
          AGCSN   +A+  + YGG
Sbjct: 33 AGCSNSDCTAFLSQCYGG 50


>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate
          synthase {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 243

 Score = 25.5 bits (56), Expect = 1.2
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 4/26 (15%)

Query: 17 VMTVEIPGVHVNDIRV----EVDDRK 38
          +M V     HV D++     +VD +K
Sbjct: 36 LMHVRFGPYHVRDVKFVAAFDVDAKK 61


>d1x6ma_ b.88.1.4 (A:) Glutathione-dependent formaldehyde-activating
           enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]}
          Length = 196

 Score = 25.0 bits (54), Expect = 1.8
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 3/61 (4%)

Query: 30  IRVEVDDRKLTVMAKHSTECWKVAGCSNGSISAYHRREY---GGEPYQIVWTLPTNVDKD 86
           +RV V  +         T+CWK  G     ++   R       G     +      + + 
Sbjct: 40  VRVAVRAQTAHNHVCGCTKCWKPEGAIFSQVAVVGRDALEVLEGAEKLEIVNAEAPIQRH 99

Query: 87  T 87
            
Sbjct: 100 R 100


>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS),
          C-terminal domain {Archaeon Thermoplasma acidophilum
          [TaxId: 2303]}
          Length = 97

 Score = 23.0 bits (49), Expect = 6.3
 Identities = 3/24 (12%), Positives = 8/24 (33%)

Query: 28 NDIRVEVDDRKLTVMAKHSTECWK 51
            + V V+  +  + A+       
Sbjct: 29 RGMNVTVEIMERGLSAQLKYASAI 52


>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with
          biphenyl dioxygenase {Burkholderia cepacia [TaxId:
          292]}
          Length = 109

 Score = 22.7 bits (48), Expect = 9.3
 Identities = 9/72 (12%), Positives = 21/72 (29%), Gaps = 2/72 (2%)

Query: 2  EWSPRMNVSELGSNYVMTVEIPGVHVNDIRVEVDDRKLTVMAKHSTECWKVAGCSNGSIS 61
          +++   +  ++     + VE  G  V    V+ +         H        G   G + 
Sbjct: 2  KFTRVCDRRDVPEGEALKVESGGTSVAIFNVDGELFATQDRCTHGDWSLSDGGYLEGDVV 61

Query: 62 A--YHRREYGGE 71
              H  ++   
Sbjct: 62 ECSLHMGKFCVR 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 396,931
Number of extensions: 15387
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 8
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)