Your job contains 1 sequence.
>043470
MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF
LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF
QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD
RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN
PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN
IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH
RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPR
PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQ
QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGML
AAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA
VQVLKLSEAKVSTQEAIHPNYLSAEVAVN
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043470
(629 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 1362 3.8e-154 3
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 1051 4.6e-120 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 1051 4.6e-120 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 1048 1.2e-119 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 1048 1.2e-119 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 1048 1.2e-119 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 1048 1.2e-119 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 1048 1.2e-119 2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 1044 3.2e-119 2
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 1060 1.8e-118 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 1038 4.7e-118 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 1161 6.9e-118 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 1031 1.2e-117 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 1042 3.3e-117 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 1042 3.3e-117 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 1028 4.2e-117 2
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 1040 5.3e-117 2
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 1038 8.6e-117 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 1038 8.6e-117 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 1047 2.3e-116 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 1032 3.7e-116 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 1032 3.7e-116 2
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 1144 4.4e-116 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 1031 9.8e-116 2
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 1139 1.5e-115 1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 1125 4.5e-114 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 1113 8.4e-113 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 987 8.9e-113 2
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 1012 1.4e-112 2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 1108 2.9e-112 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 1025 3.8e-112 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 1004 2.7e-111 2
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 1002 2.7e-111 2
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 1009 3.4e-111 2
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 1001 3.4e-111 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 1097 4.2e-111 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 1094 8.7e-111 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 1078 4.3e-109 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 702 6.4e-108 3
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 933 1.7e-107 2
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 802 5.7e-107 3
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 962 5.7e-107 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 986 3.1e-106 2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 948 1.2e-104 2
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 1028 8.6e-104 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 889 7.4e-103 2
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 884 2.0e-102 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 956 2.5e-102 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 970 2.2e-101 2
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 887 7.5e-101 2
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 603 9.2e-100 3
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 603 9.2e-100 3
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 868 7.6e-99 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 972 7.4e-98 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 803 1.1e-91 2
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 848 1.0e-84 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 848 1.0e-84 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 846 1.7e-84 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 822 5.8e-82 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 811 8.5e-81 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 810 1.1e-80 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 809 1.4e-80 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 762 1.3e-75 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 753 1.2e-74 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 748 4.0e-74 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 747 5.1e-74 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 595 6.0e-72 2
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 669 1.4e-68 2
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 690 5.6e-68 1
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 672 4.5e-66 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 591 1.7e-57 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 585 7.5e-57 1
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 429 1.4e-52 2
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 451 1.2e-42 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 449 1.9e-42 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 449 1.9e-42 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 448 2.5e-42 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 447 3.2e-42 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 437 3.6e-41 1
UNIPROTKB|F1M0P4 - symbol:F1M0P4 "Uncharacterized protein... 331 1.3e-39 2
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 421 1.8e-39 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 365 1.7e-35 2
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 363 6.6e-33 1
UNIPROTKB|E5RJB9 - symbol:PABPC1 "Polyadenylate-binding p... 346 5.3e-31 1
UNIPROTKB|B1ANR1 - symbol:PABPC4 "Polyadenylate-binding p... 335 8.8e-30 1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 319 5.1e-28 1
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 327 1.7e-26 1
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 327 1.7e-26 1
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 305 1.8e-26 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 324 3.6e-26 1
UNIPROTKB|E5RH24 - symbol:PABPC1 "Polyadenylate-binding p... 301 4.8e-26 1
UNIPROTKB|E5RGH3 - symbol:PABPC1 "Polyadenylate-binding p... 298 1.0e-25 1
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 318 1.9e-25 1
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 255 2.0e-25 2
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 227 5.1e-25 2
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 314 5.2e-25 1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 314 5.2e-25 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 222 8.3e-25 2
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 224 8.3e-25 2
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 217 8.5e-25 2
WARNING: Descriptions of 1324 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 1362 (484.5 bits), Expect = 3.8e-154, Sum P(3) = 3.8e-154
Identities = 266/410 (64%), Positives = 325/410 (79%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP VT+G L+DAF+EFKSL SVR+CKD+++GRS CYGY NFLS DA AIE
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
KN++ L+GKM+R+ WS R PDAR++GV N+FVKNL ES+ N LQ+MF+ FGNI+SCKV
Sbjct: 84 KKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKV 143
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT EDGKS+G+GFVQFE E++A+AAI+ LN T V DK IYVG+F+KK+DRV P KYT
Sbjct: 144 ATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRV--KPEEKYT 201
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL+MKNLD+DV+E+ L EKF++FGKI SL IA+DEN RG+ FVNFDNP+DARRA E +
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG+ GSK LY RAQKKAEREQ+LR QF+EK +E+ + K SN+YVKN++ VT+EEL+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
HFSQCGTITS K+M DEKG +KGFGFVCFS+PEEA AV TFHG M H KPLYVAIAQ+
Sbjct: 322 KHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQK 381
Query: 372 KEDRQAHLQLQYAQHM-AGIEGSSANVIPSGYPSLYYT-TPPGIVSQVPP 419
KEDR+ LQ+Q+ + A SSA+V P Y LYYT T PG+V Q P
Sbjct: 382 KEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTHPGMVYQSYP 431
Score = 124 (48.7 bits), Expect = 3.8e-154, Sum P(3) = 3.8e-154
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 548 QKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVEEAVQVLKLS 607
+ Q+LGE L+PLVEK +P L KITGM AV+V+EA +VLK S
Sbjct: 525 EMQLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSS 584
Query: 608 EAKVSTQEAIHPNYLSAEVA 627
+ ++ +YL++ +A
Sbjct: 585 KTNLTAPNTHRSDYLASGIA 604
Score = 54 (24.1 bits), Expect = 3.8e-154, Sum P(3) = 3.8e-154
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 394 SANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL 452
SAN+I S YP+ T P +V+ P + +G + A +VP + Q+ PL
Sbjct: 436 SANMIGSSYPNSEAVTYPPMVANAPSKN--RQNRIG-KLDRNAVSYVPNVYQSTQMLPL 491
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 1051 (375.0 bits), Expect = 4.6e-120, Sum P(2) = 4.6e-120
Identities = 217/437 (49%), Positives = 291/437 (66%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY-----P-----S 404
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY P +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRP 421
YY PP ++Q+ P P
Sbjct: 421 AYY--PPSQIAQLRPSP 435
Score = 423 (154.0 bits), Expect = 9.3e-52, Sum P(2) = 9.3e-52
Identities = 101/296 (34%), Positives = 160/296 (54%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREA----ELGARAKEF------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 151 (58.2 bits), Expect = 4.6e-120, Sum P(2) = 4.6e-120
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 539 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 597
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 1051 (375.0 bits), Expect = 4.6e-120, Sum P(2) = 4.6e-120
Identities = 217/437 (49%), Positives = 291/437 (66%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY-----P-----S 404
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY P +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRP 421
YY PP ++Q+ P P
Sbjct: 421 AYY--PPSQIAQLRPSP 435
Score = 423 (154.0 bits), Expect = 9.3e-52, Sum P(2) = 9.3e-52
Identities = 101/296 (34%), Positives = 160/296 (54%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREA----ELGARAKEF------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 151 (58.2 bits), Expect = 4.6e-120, Sum P(2) = 4.6e-120
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 539 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 597
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 1048 (374.0 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 216/437 (49%), Positives = 291/437 (66%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY-----P-----S 404
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY P +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRP 421
YY PP ++Q+ P P
Sbjct: 421 AYY--PPSQIAQLRPSP 435
Score = 422 (153.6 bits), Expect = 2.1e-51, Sum P(2) = 2.1e-51
Identities = 101/296 (34%), Positives = 160/296 (54%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREA----ELGARAKEF------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 150 (57.9 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 539 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 1048 (374.0 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 216/437 (49%), Positives = 291/437 (66%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY-----P-----S 404
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY P +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRP 421
YY PP ++Q+ P P
Sbjct: 421 AYY--PPSQIAQLRPSP 435
Score = 422 (153.6 bits), Expect = 2.1e-51, Sum P(2) = 2.1e-51
Identities = 101/296 (34%), Positives = 160/296 (54%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREA----ELGARAKEF------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 150 (57.9 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 539 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 1048 (374.0 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 216/437 (49%), Positives = 291/437 (66%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY-----P-----S 404
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY P +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRP 421
YY PP ++Q+ P P
Sbjct: 421 AYY--PPSQIAQLRPSP 435
Score = 422 (153.6 bits), Expect = 2.1e-51, Sum P(2) = 2.1e-51
Identities = 101/296 (34%), Positives = 160/296 (54%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREA----ELGARAKEF------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 150 (57.9 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 539 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 1048 (374.0 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 216/437 (49%), Positives = 291/437 (66%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY-----P-----S 404
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY P +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRP 421
YY PP ++Q+ P P
Sbjct: 421 AYY--PPSQIAQLRPSP 435
Score = 422 (153.6 bits), Expect = 2.1e-51, Sum P(2) = 2.1e-51
Identities = 101/296 (34%), Positives = 160/296 (54%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREA----ELGARAKEF------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 150 (57.9 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 539 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 1048 (374.0 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 216/437 (49%), Positives = 291/437 (66%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY-----P-----S 404
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY P +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRP 421
YY PP ++Q+ P P
Sbjct: 421 AYY--PPSQIAQLRPSP 435
Score = 422 (153.6 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 101/296 (34%), Positives = 160/296 (54%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREA----ELGARAKEF------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 150 (57.9 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 550 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 608
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 609 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 639
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 1044 (372.6 bits), Expect = 3.2e-119, Sum P(2) = 3.2e-119
Identities = 215/437 (49%), Positives = 290/437 (66%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPD T+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY-----P-----S 404
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY P +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRP 421
YY PP ++Q+ P P
Sbjct: 421 AYY--PPSQIAQLRPSP 435
Score = 418 (152.2 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 101/296 (34%), Positives = 159/296 (53%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREA----ELGARAKEF------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 150 (57.9 bits), Expect = 3.2e-119, Sum P(2) = 3.2e-119
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 539 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 1060 (378.2 bits), Expect = 1.8e-118, Sum P(2) = 1.8e-118
Identities = 217/451 (48%), Positives = 295/451 (65%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +VTD +LFDAF + ++ +VRVC+D T RS YGYVNF +P DA RAI+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+ L+GK +R+ +S RDP R+SG N+F+KNL ESID+ L + F +FGNI+SCKVA
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVA 156
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQ+ EESA AIE LNG + DK++YVG F+++ +R + K+TN
Sbjct: 157 VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN 216
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL T++ L F ++GKI S ++ +D G S+GFGFVNF+N DDA RA+E++N
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y RAQKK+ERE LR ++E+ KE K++ SN+YVKN+D ++DE+LK
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS GT+TS+KVMRD G +KG GFV F++PEEA++A++ G M+ KPLYVAIAQRK
Sbjct: 337 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Query: 373 EDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGL 423
EDR+ LQ Q++Q M G V P G P + Y PP ++ PP+PG
Sbjct: 397 EDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMI---PPQPGY 453
Query: 424 MYQPLGLRTGWRANG------FVPPTRPAFQ 448
YQ L G R G F+P +P Q
Sbjct: 454 GYQQQ-LVPGMRPGGGPVPSFFMPMVQPQQQ 483
Score = 426 (155.0 bits), Expect = 1.2e-50, Sum P(2) = 1.2e-50
Identities = 99/295 (33%), Positives = 166/295 (56%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEES 152
A + G +L+V +L ++ + +L + F G +++ +V +S G+G+V F +
Sbjct: 30 ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQD 89
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
A AI+ LN + K I V + + V S A N+F+KNLD + + L + FS
Sbjct: 90 AARAIQELNYIPLYGKPIRV-MYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFS 145
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FG I S +A D +G S+G+GFV + N + A++A+E +NG ++ K +Y ++ ER
Sbjct: 146 SFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER 205
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
+ K K +NVYVKN+ + TD++LK F + G ITSA VM+D +G
Sbjct: 206 DSTAN------------KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK 253
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHM 387
+KGFGFV F + ++A++AV + +G+ K YV AQ+K +R+ L+++Y Q++
Sbjct: 254 SKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNL 308
Score = 127 (49.8 bits), Expect = 1.8e-118, Sum P(2) = 1.8e-118
Identities = 37/118 (31%), Positives = 56/118 (47%)
Query: 500 QSKYVPNGRIRELNKGSGVS--LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLY 557
Q + P GR+ +G G S + ++ G M L L+ +PEQQ+ +LGE LY
Sbjct: 505 QQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLY 564
Query: 558 PLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVEEAVQVLKLSEAKVSTQE 615
PLVE+ + + AK+TGM KV EA+ VL+ A +T++
Sbjct: 565 PLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGATEQ 622
Score = 107 (42.7 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++LYV +L P ++D +L + FS F ++ S +V +D G S G+V F +P +A A+
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 376
Query: 72 VKNHTQLHGKMLRISWSCRDPDAR 95
+ + K L ++ + R D R
Sbjct: 377 QLSGKMIESKPLYVAIAQRKEDRR 400
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 1038 (370.5 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 209/420 (49%), Positives = 288/420 (68%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FSK+GK S+ + D G S+GFGFV+F+ +DA +A+E
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM ++ G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLY-YTTPPGIVSQVPPRPGLMYQP 427
QRKE+R+AHL QY Q +AG+ AN I + + P+ Y P V Q RP Y P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPA--VPQAQSRP-TYYAP 425
Score = 412 (150.1 bits), Expect = 9.0e-49, Sum P(2) = 9.0e-49
Identities = 100/288 (34%), Positives = 157/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I + + ++ + S N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFDVIKGKPIRI-MWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G+ FV+F+ D A RA+E MNG ++ + ++ R + + ERE
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA--- 181
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ K KE +NVY+KN DD+ DE LK FS+ G S KVM D G +KGFG
Sbjct: 182 -ELGAKAKEF------TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F E+A+KAV +G ++ K ++V AQ+K +RQA L+ ++ Q
Sbjct: 235 FVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQ 282
Score = 145 (56.1 bits), Expect = 4.7e-118, Sum P(2) = 4.7e-118
Identities = 34/90 (37%), Positives = 47/90 (52%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 535 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 593
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KVEEAV VL+ +AK + +
Sbjct: 594 ESPESLRSKVEEAVAVLQAHQAKKEAAQKV 623
Score = 108 (43.1 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G + S +V RD + G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQR 89
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 266/635 (41%), Positives = 368/635 (57%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLH DVT+ L++ FS ++ S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ ++ L + FSK+G S+ + DENG SRGFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA+RA++ MNG + K++Y RAQKK ER+ L+ +FE+ +++R+ +Y+G N+YVKN+
Sbjct: 242 EDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM D G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMDG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY-----P-----S 404
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY P +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA 420
Query: 405 LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPT-RPAFQVSPLPVNPKHXXXXX 463
YY P ++Q+ P P Q G+R N +P T RP+ +P P
Sbjct: 421 AYY--PTSQLAQLRPSPRWTTQ--GVRPQHFQN--MPGTMRPS---APRPQTFSTMRPAS 471
Query: 464 XXXXXXXLPQVGAHYMXXXXXXXXXXXXXXXXXXGGQSKYVPNGRIRELNKGSGVSLGTF 523
+V M Q KY P+ R + + + + T
Sbjct: 472 QVPRMMSTQRVATQTMGPRPSTAAAAASAPPVRGVPQYKYAPSVRNPQQHMNTQPQV-TM 530
Query: 524 NSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXX 582
V + + L MLAA P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 531 QQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSE 590
Query: 583 XXXXXXXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ +AK + Q+ +
Sbjct: 591 LLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKTV 625
Score = 411 (149.7 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 96/296 (32%), Positives = 163/296 (55%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN +D+ D++LK FS+ G S +VM DE
Sbjct: 177 KEREA----ELGARAKEF------TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGFV F E+A +AV+ +G ++ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQ 282
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 1031 (368.0 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 211/443 (47%), Positives = 291/443 (65%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AI+ +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +E L E F ++G S+ + D++G SRGFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K ++ RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ F+ G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFTPFGSITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIP-SGYPSLYYTT--PPGIVSQVP 418
KPLYVA+AQRKE+RQAHL QY Q MA + + + P PS Y+ PP
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAY 420
Query: 419 PRPGLMYQPLGLRTGWRANGFVP 441
PG + Q L W A G P
Sbjct: 421 YPPGQIAQ-LRPSPRWTAQGARP 442
Score = 414 (150.8 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 98/296 (33%), Positives = 160/296 (54%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN +D+ DE LK F Q G S KVM D+
Sbjct: 177 KEREA----ELGARAKEF------TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGFV F E+A KAV+ +G L+ K ++V AQ+K +RQ L+ ++ Q
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQ 282
Score = 148 (57.2 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 537 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 595
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ +AK + Q+ +
Sbjct: 596 ESPESLRSKVDEAVAVLQAHQAKEAAQKVV 625
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 1042 (371.9 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 210/420 (50%), Positives = 289/420 (68%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM ++ G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLY-YTTPPGIVSQVPPRPGLMYQP 427
QRKE+R+AHL QY Q +AG+ AN I + + P+ Y P V Q RP Y P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA--VPQAQGRPPY-YTP 425
Score = 408 (148.7 bits), Expect = 4.9e-47, Sum P(2) = 4.9e-47
Identities = 98/288 (34%), Positives = 157/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I + + ++ + S N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFDVIKGKPIRI-MWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G+ FV+F+ + A +A+E MNG ++ + ++ R + + ERE
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA--- 181
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ K KE +NVY+KN ++V DE LK FSQ G S KVMRD G +KGFG
Sbjct: 182 -ELGAKAKEF------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV + E+A+KAV +G + K ++V AQ+K +RQA L+ ++ Q
Sbjct: 235 FVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 133 (51.9 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGM
Sbjct: 519 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 577
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ AK + +
Sbjct: 578 ESPESLRSKVDEAVAVLQAHHAKKEAAQKV 607
Score = 109 (43.4 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G + S +V RD + G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQR 89
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 1042 (371.9 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 210/420 (50%), Positives = 289/420 (68%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM ++ G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLY-YTTPPGIVSQVPPRPGLMYQP 427
QRKE+R+AHL QY Q +AG+ AN I + + P+ Y P V Q RP Y P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA--VPQAQGRPPY-YTP 425
Score = 408 (148.7 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 98/288 (34%), Positives = 157/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I + + ++ + S N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFDVIKGKPIRI-MWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G+ FV+F+ + A +A+E MNG ++ + ++ R + + ERE
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA--- 181
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ K KE +NVY+KN ++V DE LK FSQ G S KVMRD G +KGFG
Sbjct: 182 -ELGAKAKEF------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV + E+A+KAV +G + K ++V AQ+K +RQA L+ ++ Q
Sbjct: 235 FVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 133 (51.9 bits), Expect = 3.3e-117, Sum P(2) = 3.3e-117
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGM
Sbjct: 548 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 606
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ AK + +
Sbjct: 607 ESPESLRSKVDEAVAVLQAHHAKKEAAQKV 636
Score = 109 (43.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G + S +V RD + G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQR 89
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 1028 (366.9 bits), Expect = 4.2e-117, Sum P(2) = 4.2e-117
Identities = 208/429 (48%), Positives = 290/429 (67%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD+T+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 131
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R + + A +
Sbjct: 132 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKE 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E F K+GK S+ + D G SRGFGFV+++ +DA +A+E
Sbjct: 191 FTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVE 250
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG+ + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 251 EMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 310
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM +E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 311 LRKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 369
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+AHL QY Q +AG+ AN I + + P+ Y P V Q R Y P
Sbjct: 370 QRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPAGGYFMPA--VPQAQNRT-TYYAPN 426
Query: 429 GLRTGWRAN 437
L T R N
Sbjct: 427 QL-TQMRPN 434
Score = 405 (147.6 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 99/288 (34%), Positives = 156/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L I L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 11 MASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 70
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N V K I + + ++ + S N+F+KNLD + + L + FS FG I
Sbjct: 71 DTMNFDVVKGKPIRI-MWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSAFGNI 126
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G+ FV+F+ D A RA+E MNG ++ + ++ R + + ERE
Sbjct: 127 LSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA--- 182
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ K KE +NVY+KN DD+ D+ LK F + G S KVM D G ++GFG
Sbjct: 183 -EMGAKAKEF------TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFG 235
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV + E+A+KAV +G L+ K ++V AQ+K +RQA L+ ++ Q
Sbjct: 236 FVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQ 283
Score = 146 (56.5 bits), Expect = 4.2e-117, Sum P(2) = 4.2e-117
Identities = 36/89 (40%), Positives = 49/89 (55%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 538 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 596
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKV-STQE 615
KVEEAV VL+ +AK +TQ+
Sbjct: 597 ESHESLRSKVEEAVAVLQAHQAKKDATQK 625
Score = 106 (42.4 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ D+T+ L FS G + S +V RD + G+ +V F P +A +
Sbjct: 9 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 68
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 69 ALDTMNFDVVKGKPIRIMWSQR 90
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 1040 (371.2 bits), Expect = 5.3e-117, Sum P(2) = 5.3e-117
Identities = 210/420 (50%), Positives = 290/420 (69%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM ++ G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLY-YTTPPGIVSQVPPRPGLMYQP 427
QRKE+R+AHL QY Q +AG+ AN I + + P+ Y P V Q RP Y P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA--VPQAQGRPPY-YTP 425
Score = 409 (149.0 bits), Expect = 5.5e-47, Sum P(2) = 5.5e-47
Identities = 98/288 (34%), Positives = 157/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I + + ++ + S N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFDVIKGKPIRI-MWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G+ FV+F+ + A +A+E MNG ++ + ++ R + + ERE
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA--- 181
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ K KE +NVY+KN ++V DE LK FSQ G S KVMRD G +KGFG
Sbjct: 182 -ELGAKAKEF------TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV + E+A+KAV +G + K ++V AQ+K +RQA L+ ++ Q
Sbjct: 235 FVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 133 (51.9 bits), Expect = 5.3e-117, Sum P(2) = 5.3e-117
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGM
Sbjct: 535 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 593
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ AK + +
Sbjct: 594 ESPESLRSKVDEAVAVLQAHHAKKEAAQKV 623
Score = 109 (43.4 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G + S +V RD + G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQR 89
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 1038 (370.5 bits), Expect = 8.6e-117, Sum P(2) = 8.6e-117
Identities = 210/420 (50%), Positives = 289/420 (68%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM ++ G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLY-YTTPPGIVSQVPPRPGLMYQP 427
QRKE+R+AHL QY Q +AG+ AN I + + P+ Y P V Q RP Y P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA--VPQAQGRPPY-YTP 425
Score = 409 (149.0 bits), Expect = 5.5e-47, Sum P(2) = 5.5e-47
Identities = 98/288 (34%), Positives = 157/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I + + ++ + S N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFDVIKGKPIRI-MWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G+ FV+F+ + A +A+E MNG ++ + ++ R + + ERE
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA--- 181
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ K KE +NVY+KN ++V DE LK FSQ G S KVMRD G +KGFG
Sbjct: 182 -ELGAKAKEF------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV + E+A+KAV +G + K ++V AQ+K +RQA L+ ++ Q
Sbjct: 235 FVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 133 (51.9 bits), Expect = 8.6e-117, Sum P(2) = 8.6e-117
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGM
Sbjct: 535 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 593
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ AK + +
Sbjct: 594 ESPESLRSKVDEAVAVLQAHHAKKEAAQKV 623
Score = 109 (43.4 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G + S +V RD + G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQR 89
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 1038 (370.5 bits), Expect = 8.6e-117, Sum P(2) = 8.6e-117
Identities = 210/420 (50%), Positives = 290/420 (69%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM ++ G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLY-YTTPPGIVSQVPPRPGLMYQP 427
QRKE+R+AHL QY Q +AG+ AN I + + P+ Y P V Q RP Y P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA--VPQAQGRPPY-YTP 425
Score = 408 (148.7 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 98/288 (34%), Positives = 157/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I + + ++ + S N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFDVIKGKPIRI-MWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G+ FV+F+ + A +A+E MNG ++ + ++ R + + ERE
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA--- 181
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ K KE +NVY+KN ++V DE LK FSQ G S KVMRD G +KGFG
Sbjct: 182 -ELGAKAKEF------TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV + E+A+KAV +G + K ++V AQ+K +RQA L+ ++ Q
Sbjct: 235 FVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 133 (51.9 bits), Expect = 8.6e-117, Sum P(2) = 8.6e-117
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGM
Sbjct: 549 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 607
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ AK + +
Sbjct: 608 ESPESLRSKVDEAVAVLQAHHAKKEAAQKV 637
Score = 109 (43.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G + S +V RD + G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQR 89
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 1047 (373.6 bits), Expect = 2.3e-116, Sum P(2) = 2.3e-116
Identities = 213/443 (48%), Positives = 293/443 (66%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL VTD +LF+AF++ + SVRVC+D TT RS YGYVN+ +P DA RA+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N L+G+ +R+ +S RDP RKSGV N+F+KNL +SID+ L E F FG I+SCKVA
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVA 165
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQ++T+E+A AI+ LNG + DK++YVG F+ K R K+TN
Sbjct: 166 VDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTN 225
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL +++E L + F +FG S +I RD G S+GFGFVNF+N DDA RA++A+N
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K + +AQKK+ERE L+ +FE+ KE K +GSN+YVKN+D+ VTD++L+
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
HF+ GTITS KVMRD G+++G GFV FS+PEEA++A+ +G M+ KPLYVA+AQRK
Sbjct: 346 HFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRK 405
Query: 373 EDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYP----SLYYTT-PPGIVSQVPPRPGL 423
EDR+A LQ Q++Q +M G + P G P L+Y PP ++ P+PG
Sbjct: 406 EDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMI----PQPGF 461
Query: 424 MYQPL---GLRTGWRA--NGFVP 441
YQ G+R G N F+P
Sbjct: 462 GYQQQLVPGMRPGGSPMPNFFMP 484
Score = 400 (145.9 bits), Expect = 6.9e-44, Sum P(2) = 6.9e-44
Identities = 94/295 (31%), Positives = 161/295 (54%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEES 152
A + G +L+V +L ++ + +L E F G ++S +V +S G+G+V + T +
Sbjct: 39 AAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQD 98
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
A+ A+ LN + + I V ++ D L N+F+KNLD + + L E FS
Sbjct: 99 ASRALNELNFMALNGRAIRVMYSVR--DPSLRKSGVG--NIFIKNLDKSIDHKALHETFS 154
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FG I S +A D +G S+G+GFV +D + A+ A++ +NG ++ K +Y K +R
Sbjct: 155 AFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQR 214
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
+ E++ K +NVYVKN+ + ++DEEL F + G TS +MRD +G
Sbjct: 215 DP---------SGEKV---KFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK 262
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHM 387
+KGFGFV F + ++A++AV+ +G K +V AQ+K +R+ L+ ++ Q +
Sbjct: 263 SKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSL 317
Score = 120 (47.3 bits), Expect = 2.3e-116, Sum P(2) = 2.3e-116
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVEE 599
LA +PEQQ+ +LGE LYPLVE+ +P+ AK+TGM KV E
Sbjct: 581 LANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTE 640
Query: 600 AVQVLK 605
A+ VL+
Sbjct: 641 AMDVLR 646
Score = 108 (43.1 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++LYV +L VTD +L + F+ F ++ S +V +D + G S G+V F +P +A RAI
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAIT 385
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKS 97
N + K L ++ + R D RK+
Sbjct: 386 EMNGKMIVTKPLYVALAQRKED-RKA 410
Score = 37 (18.1 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 541 AAPSPEQQKQILGERLYP 558
A P P+Q ++ ++++P
Sbjct: 509 ALPQPQQPSPMMQQQMHP 526
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 1032 (368.3 bits), Expect = 3.7e-116, Sum P(2) = 3.7e-116
Identities = 209/420 (49%), Positives = 289/420 (68%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+AN AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM ++ G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLY-YTTPPGIVSQVPPRPGLMYQP 427
QRKE+R+AHL QY Q +AG+ AN I + + P+ Y P V Q RP Y P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA--VPQAQGRPPY-YTP 425
Score = 406 (148.0 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
Identities = 97/288 (33%), Positives = 157/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I + + ++ + S N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFDVIKGKPIRI-MWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G+ FV+F+ + A +A+E MNG ++ + ++ R + + ERE
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA--- 181
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ K KE +NVY+KN ++V DE L+ FSQ G S KVMRD G +KGFG
Sbjct: 182 -ELGAKAKEF------TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV + E+A+KAV +G + K ++V AQ+K +RQA L+ ++ Q
Sbjct: 235 FVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQ 282
Score = 133 (51.9 bits), Expect = 3.7e-116, Sum P(2) = 3.7e-116
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGM
Sbjct: 535 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 593
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ AK + +
Sbjct: 594 ESPESLRSKVDEAVAVLQAHHAKKEAAQKV 623
Score = 109 (43.4 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G + S +V RD + G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQR 89
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 1032 (368.3 bits), Expect = 3.7e-116, Sum P(2) = 3.7e-116
Identities = 209/420 (49%), Positives = 289/420 (68%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+AN AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM ++ G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLY-YTTPPGIVSQVPPRPGLMYQP 427
QRKE+R+AHL QY Q +AG+ AN I + + P+ Y P V Q RP Y P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA--VPQAQGRPPY-YTP 425
Score = 406 (148.0 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 97/288 (33%), Positives = 157/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I + + ++ + S N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFDVIKGKPIRI-MWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G+ FV+F+ + A +A+E MNG ++ + ++ R + + ERE
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA--- 181
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ K KE +NVY+KN ++V DE L+ FSQ G S KVMRD G +KGFG
Sbjct: 182 -ELGAKAKEF------TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV + E+A+KAV +G + K ++V AQ+K +RQA L+ ++ Q
Sbjct: 235 FVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQ 282
Score = 133 (51.9 bits), Expect = 3.7e-116, Sum P(2) = 3.7e-116
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGM
Sbjct: 564 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 622
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ AK + +
Sbjct: 623 ESPESLRSKVDEAVAVLQAHHAKKEAAQKV 652
Score = 109 (43.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G + S +V RD + G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQR 89
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
Identities = 261/632 (41%), Positives = 364/632 (57%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AI+ +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +E L E F K+G S+ + D+NG S+GFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K ++ RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ F GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIP-SGYPSLYYTT--PPGIVSQVP 418
KPLYVA+AQRKE+RQAHL QY Q MA + + + P PS Y+ PP
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAY 420
Query: 419 PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSP---LPVNPKHXXXXXXXXXXXXLPQV- 474
PG + Q L W A G P P FQ P P P+ +P+V
Sbjct: 421 YPPGQIAQ-LRPSPRWTAQGARP--HP-FQNMPGAIRPTAPRPPTFSTMRPASNQVPRVM 476
Query: 475 GAHYMXXXXX-------XXXXXXXXXXXXXGGQSKYVPNGRIRE-LNKGSGVSLGTFNSG 526
A + Q KY R ++ LN V++ +
Sbjct: 477 SAQRVANTSTQTMGPRPTTAAAAAASAVRAVPQYKYAAGVRNQQHLNTQPQVAMQQ-PAV 535
Query: 527 GVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXX 586
V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 536 HVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHM 594
Query: 587 XXXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+ ++
Sbjct: 595 LESPESLRSKVDEAVAVLQAHQAKEAAQKVVN 626
Score = 416 (151.5 bits), Expect = 2.0e-37, P = 2.0e-37
Identities = 97/296 (32%), Positives = 161/296 (54%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN DD+ DE LK F + G S KVM D+
Sbjct: 177 KEREA----ELGARAKEF------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G ++ K ++V AQ+K +RQ L+ ++ Q
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 1031 (368.0 bits), Expect = 9.8e-116, Sum P(2) = 9.8e-116
Identities = 215/452 (47%), Positives = 297/452 (65%)
Query: 3 VVPPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
VV T P +SLY GDL P VT+ LFD F ++ SVRVC+D RS Y Y+NF
Sbjct: 39 VVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFS 97
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
+P+DA RA+E N+T L + +RI S RDP R SG N+F+KNL SIDN L E F
Sbjct: 98 NPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+FG I+SCKVA G+SKG+GFVQFE EESA AAI+ LNG + DK+++VG FI++ +R
Sbjct: 158 SFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
Query: 182 VLP--SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
+P ++TN+++KNL ++ E+ L + F KFG I+S ++ RD++G SR FGFVNF+
Sbjct: 218 ARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFE 277
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ A A+E MNG +G VLY RAQKK+ERE+ LR +FE++R R K +G+N+Y+K
Sbjct: 278 CTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLK 337
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+DD V DE+LK FS+ G +TS+KVM + +G+++GFGFV +S+PEEA +A++ +G M+
Sbjct: 338 NLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMI 397
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQ-----HMAGIEGSSANVIPSGYPSLYYTTPPGIV 414
RKPLY+A+AQRKEDR+AHLQ ++Q M+G +P G P Y G
Sbjct: 398 GRKPLYIALAQRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMP-GPPQHMYVGQNG-A 455
Query: 415 SQVPPRP-GLMYQPL---GLRTGWRANGFVPP 442
S VP +P G +QP G+R G F+ P
Sbjct: 456 SMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVP 487
Score = 130 (50.8 bits), Expect = 9.8e-116, Sum P(2) = 9.8e-116
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAV 595
L LA+ SP + ++LGE+LYPLVE+H+P VAK+TGM
Sbjct: 575 LTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKS 634
Query: 596 KVEEAVQVLKLS 607
KV EA+ VL+LS
Sbjct: 635 KVSEALDVLRLS 646
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
Identities = 257/632 (40%), Positives = 359/632 (56%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + A ++TN+++KN D+ +E L E F K+G S+ + D++G S+GFGFV+F+
Sbjct: 182 EMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA+RA++ MNG + K +Y RAQKK ER+ L+ +FE+ +++R+ +Y+G N+YVKN+
Sbjct: 242 EDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG--IVSQVPP 419
KPLYVA+AQRKE+RQAHL QY Q MA S +P+ + Y PP ++ +P
Sbjct: 361 KPLYVALAQRKEERQAHLTSQYMQRMA-----SVRAVPNPVLNPYQPAPPSGYFMAAIPQ 415
Query: 420 RPG-LMYQPLG----LRTG--WRANGFVPP---TRPAFQVSPLPVNPKHXXXXXXXXXXX 469
Y P LR W G P P V P P+
Sbjct: 416 AQNRAAYYPTSQLAQLRPSPRWATQGVRPQHFQNMPNAAVRPSAPRPQTFNPVRPASQVP 475
Query: 470 XL---PQVGAHYMXXXXXXXXXXXXXXXXXXGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
+ ++G+ M Q KY P R + + +
Sbjct: 476 RMMTSQRMGSQAMGPRPAAAGAATGPAQVRGVPQYKYAPGVRNPQQRMPTQPQVPMQQPA 535
Query: 527 -GVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXX 585
V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 536 VHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLH 594
Query: 586 XXXXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ +AK + Q+++
Sbjct: 595 MLESPESLRSKVDEAVAVLQAHQAKEAAQKSV 626
Score = 406 (148.0 bits), Expect = 5.1e-36, P = 5.1e-36
Identities = 96/296 (32%), Positives = 161/296 (54%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN +D+ DE+LK F + G S +VM D+
Sbjct: 177 KEREA----EMGARAKEF------TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A +AV+ +G ++ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQ 282
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 255/612 (41%), Positives = 349/612 (57%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L+ FS + S+RVC+D T RS Y Y+NF P DA A++
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + G+ +RI WS RDP RKSGV N+F+KN+ ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+AN AIE +NG + D++++VG F + +R + + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ E L F++FGK S+ + DE G SRGFGFVNF N DARRA+
Sbjct: 190 FTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVT 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +VLY RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + DE+
Sbjct: 250 EMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F+ GTITSAKVM D G ++GFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFAPYGTITSAKVMTDG-GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYP--SLYY-TTPPGIVSQVPPRPGLMYQ 426
QRKE+R+A L QY Q +A I IP+ Y S YY T+ P + S P L
Sbjct: 369 QRKEERKAILTNQYIQRLASIRAIPGPAIPTTYQQGSGYYMTSVPQVRSFYNAVPNLRPA 428
Query: 427 PLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHXXXXXXXXXXXXLPQVGAHYMXXXXXXX 486
P R ++A P F +P P +P +
Sbjct: 429 P---RWAFQAPRTQGPFPAQFVRQAVPRRPS-TTISTVRQASTQVPHINNTQRMANIGTQ 484
Query: 487 XXXXXXXXXXXGGQSKYVPNGRIRELNKGSG--------VSLGTFNSGGVMARKPDMLNG 538
G S+Y + +R + + V T + + ++P +
Sbjct: 485 TAGGRAAGTAVRGVSQYKYSAGVRNVQQVINAPAPVVHQVVQNTEPAVHMKGQEP-LTAS 543
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVE 598
MLAA ++QKQ+LGERLYPL++ P L KITGM KVE
Sbjct: 544 MLAAAPLKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHMLESPESLHAKVE 603
Query: 599 EAVQVLKLSEAK 610
EAV VL+ +AK
Sbjct: 604 EAVAVLQAHQAK 615
Score = 371 (135.7 bits), Expect = 9.7e-32, P = 9.7e-32
Identities = 87/288 (30%), Positives = 157/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L + F G I+S +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I + + ++ + S N+F+KN+D + + L + FS FG I
Sbjct: 70 DTMNYEVIKGRPIRI-MWSQRDPGLRKSGVG---NIFIKNMDESIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ + + ERE
Sbjct: 126 LSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREA--- 181
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ + +++ +NVY+KN +D+ E+LK F++ G S VM DE+G ++GFG
Sbjct: 182 -----EMGAKAVEF--TNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F + +A +AV +G L+ + LYV AQ++ +RQ L+ ++ Q
Sbjct: 235 FVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQ 282
Score = 258 (95.9 bits), Expect = 6.3e-19, P = 6.3e-19
Identities = 65/195 (33%), Positives = 110/195 (56%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
PA +L++ +L +DVTE L +KFS G+I S+ + RD S G+ ++NF P DA
Sbjct: 6 PAYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
AL+ MN VI + + +Q R+ LR K + N+++KN+D+
Sbjct: 66 ECALDTMNYEVIKGRPIRIMWSQ----RDPGLR-------KSGV-----GNIFIKNMDES 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G +KG+GFV F + E A++A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A +
Sbjct: 169 FVGHFKSRKEREAEM 183
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
Identities = 248/614 (40%), Positives = 349/614 (56%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D + RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
E+G S+GHGFV FET+E+A AI+ +NG + D++++VG F + +R + A +
Sbjct: 131 VCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ + L E FS+FGK S+ + D G S+GFGFVNF+ ++A++A+
Sbjct: 190 FTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVA 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I +++Y RAQK+ ER+ L+ +FE+ ++ER+ +Y+G N+YVKN+DD + DE
Sbjct: 250 DMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQP-- 427
QRKE+R+A L QY Q +A + + S P Y PP + Q P Y P
Sbjct: 369 QRKEERKAILTNQYMQRLATMRALPGPFLGSFQPPPGYFLPP--IPQ-PQTRAAFYSPSP 425
Query: 428 -LGLR--TGWRANGFVPPTRPAFQ-VSPLPVNPKHXXXXXXXX--XXXXLPQVG--AHYM 479
+ +R T W A PP PA + V P+ +P+V A +
Sbjct: 426 VVPVRPATRWSAQPTRPPPYPAATPILRAAVQPRRLLSNISTMRQASTQVPRVPPQAQRV 485
Query: 480 XXXXXXXXXXXXXXXXXXGGQSKYVPNGRIRELNKGSGVSLGTFNSGG----VMARKPDM 535
G +Y + +R + V G G + ++P +
Sbjct: 486 ANIGTQTISARVPSSPTLRGAPQYKYSLAVRNIQPMGSVPPGAQQVGEPAVHIQGQEP-L 544
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAV 595
MLAA P++QKQ++GERLYPL+ L KITGM
Sbjct: 545 TASMLAAAPPQEQKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESPESLHS 604
Query: 596 KVEEAVQVLKLSEA 609
K+EEAV VL+ +A
Sbjct: 605 KIEEAVAVLQAHQA 618
Score = 388 (141.6 bits), Expect = 9.7e-34, P = 9.7e-34
Identities = 93/288 (32%), Positives = 156/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + + + + ++ + S N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFEVIKGRPVRI-MWSQRDPGLRKSGVG---NVFIKNLDDSIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG SRG GFV+F+ + A RA++ MNG ++ + ++ + + ERE
Sbjct: 126 LSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREA--- 181
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+F R +++ +NVY+KN DD+ D L+ FS+ G S KVM D G +KGFG
Sbjct: 182 -EFGA----RAMEF--TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F EEA KAV +G ++ + +YV AQ++ +RQ+ L+ ++ Q
Sbjct: 235 FVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQ 282
Score = 259 (96.2 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 67/193 (34%), Positives = 107/193 (55%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD + S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI + + +Q R+ LR K + NV++KN+DD
Sbjct: 66 ERALDTMNFEVIKGRPVRIMWSQ----RDPGLR-------KSGV-----GNVFIKNLDDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G ++G GFV F + E A++A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQA 377
+V + +++R+A
Sbjct: 169 FVGHFKSRKEREA 181
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 987 (352.5 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
Identities = 207/456 (45%), Positives = 286/456 (62%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+R+C+D T S+ Y YVNF
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS RDP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SC V E+G SKG+GFV FET E+A AI+ +NG + ++++VG+F + +R
Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGYPSLYYTTPPGIVSQVPPR 420
KPLYVA+AQRKE+RQA+L +Y Q MA + + PSGY + T P +
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGY---FMTAVPQTQNHAAYY 417
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNP 456
P L W A G P P FQ P + P
Sbjct: 418 PPSQIARLRPSPRWTAQGARP--HP-FQNKPSAIRP 450
Score = 389 (142.0 bits), Expect = 2.3e-45, Sum P(2) = 2.3e-45
Identities = 95/296 (32%), Positives = 154/296 (52%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A+L+V +L + L E F G I+S ++ S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
+ A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFVKNLDKSINNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
S FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ + + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREA----ELGARAKEF------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ + Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 146 (56.5 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVEE 599
LA+ P++QKQ+LGERL+PL++ P L KITGM KV+E
Sbjct: 545 LASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDE 604
Query: 600 AVQVLKLSEAKVSTQEAIH 618
AV VL+ +AK +TQ+A++
Sbjct: 605 AVAVLQAHQAKEATQKAVN 623
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 1012 (361.3 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
Identities = 206/423 (48%), Positives = 279/423 (65%)
Query: 5 PPTAT-TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PP AT + ASLY+GDLHPDV++ LF+ FS + S+RVC+D+T+ S Y YVNF P
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N +HG+ +RI WS RDP AR++G N+F+KNL IDN + + F F
Sbjct: 109 ADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLF 168
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVAT ++G SKG+GFV FETE SA AIE +NG + DK++YVG+F ++ R+
Sbjct: 169 GNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMK 228
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L KYTN+F+KN + +E L FSKFG+I S ++ D G +GFGFV F +
Sbjct: 229 ELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQ 288
Query: 242 DDARRALEAMNGSVI-GSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
D A +A+E +N S++ G+ L RAQKK+ER L+ ++E ++ER+ +Y+G N+YVK
Sbjct: 289 DAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVK 348
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
NI++D+ D+ L+ HFS GTITSAKVM DE G +KGFGFVCF PEEA+ AV + M+
Sbjct: 349 NIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMI 408
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIE-GSSANVIPSGYPSLYYTTPPGIVSQVP 418
KPLYVA+AQRKEDR+A L QY Q +A + G A SG P++ PG
Sbjct: 409 GAKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQA----SGVPAMTQLYQPGQQGYFV 464
Query: 419 PRP 421
P P
Sbjct: 465 PNP 467
Score = 119 (46.9 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
Identities = 33/98 (33%), Positives = 49/98 (50%)
Query: 521 GTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL--VAKITGMXXXX 578
G SG V+ + + + MLA +P++QKQ+LGER+Y L+EK P+ KITGM
Sbjct: 590 GQGQSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEI 649
Query: 579 XXXXXXXXXXXXXXXAVKVEEAVQVLKLSEAKVSTQEA 616
KVEEA VL +++ ++ A
Sbjct: 650 DNAELIMMLQDAELFRSKVEEAFGVLTNAQSAAASTSA 687
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
Identities = 247/617 (40%), Positives = 351/617 (56%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA--K 189
E G S+G+GFV FET+E+AN AI+ +NG + D++++VG F + +R L A +
Sbjct: 131 VCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E FS FG S+ + D+ G SRGFGFVN+ N ++A++A+
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +++Y RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + D+
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+A L QY Q +A + ++ S Y P + Q P R P+
Sbjct: 369 QRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPA--MPQPPNRTFYSPNPVA 426
Query: 430 -LRTG--WRANGFVPPTR--PAFQVSPLPVNPKHXXXXXXXXXXXXLPQVGAHYMXXXXX 484
+R W ++ PP PA + +P +P+V H
Sbjct: 427 PVRQAPQWTSHQSRPPQYQPPAPLMRAVPPRRMSSNISTMKQASTQVPRVAPHSQRVANI 486
Query: 485 XXXXXXXXXXXXXG---GQSKYVPNGRIRELNK-GSGVSLGTFNSGGVMARKPDMLNGM- 539
Y + +R + G+ L V+ + + L
Sbjct: 487 GTQTAGARAQVNPSIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAVLMQGQEPLTASS 546
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVEE 599
LA+ P++QKQ+LGERLYPL+ + P L KITGM KVEE
Sbjct: 547 LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEE 606
Query: 600 AVQVLKLSEAKVSTQEA 616
AV VL+ +AK ++Q++
Sbjct: 607 AVAVLQAHQAKENSQKS 623
Score = 382 (139.5 bits), Expect = 5.0e-33, P = 5.0e-33
Identities = 89/288 (30%), Positives = 160/288 (55%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I + + ++ + S N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFEVIKGRPIRI-MWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DE+G SRG+GFV+F+ + A RA++ MNG ++ + ++ + + ERE
Sbjct: 126 LSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL--- 181
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
++ K ++++ +NVY+KN +D+ D+ L+ FS G S KVM D+ G ++GFG
Sbjct: 182 -EYGAK----VMEF--TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV + + EEA KAV+ +G ++ + +YV AQ++ +RQ L+ ++ Q
Sbjct: 235 FVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQ 282
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 1025 (365.9 bits), Expect = 3.8e-112, Sum P(2) = 3.8e-112
Identities = 216/449 (48%), Positives = 293/449 (65%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +VTD +L+D F+E + SVRVC+D+ T S YGYVN+ + DA +A++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N++ L+GKM+RI++S RD AR+SGV NLFVKNL +S+DN L E F G I+SCKVA
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+S+G+GFVQF+TE+SA AIE LNG + DK+I+VG F++K +R + K+TN
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTN 226
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL T++ L F ++G I+S ++ RD +G SR FGFVNF+NP+DA RA+EA+N
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y +AQKK+ERE L ++E+ + K+ G N+YVKN+DD VTDE+L+
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F++ GTITS KVMRD G +KG GFV FS+ EAS+ +N +G M+ KPLYVA+AQRK
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 373 EDRQAHLQLQYAQ-HMAGIEGSSAN--VIPSGYPSL-----YYTTPPGIVSQVPPRPGLM 424
E+R+A LQ Q++Q A I G + G P L Y PP I+ P +PG
Sbjct: 407 EERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPII---PHQPGFG 463
Query: 425 YQPLGLRTGWRANGFVPPTRPAFQVSPLP 453
YQP L G R F P Q P P
Sbjct: 464 YQPQ-LVPGMRPAFFGGPMMQPGQQGPRP 491
Score = 102 (41.0 bits), Expect = 3.8e-112, Sum P(2) = 3.8e-112
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVEE 599
LA +P QQ+ +LGE LYPLV++ + + AK+TGM KV E
Sbjct: 566 LANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVSE 625
Query: 600 AVQVLK 605
A+ VL+
Sbjct: 626 ALDVLR 631
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 1004 (358.5 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 211/448 (47%), Positives = 294/448 (65%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ P + PP Y
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFL--PAMPQ--PPAQAAYY--- 421
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNP 456
G G V PT+PA + + P P
Sbjct: 422 GC-------GPVTPTQPAPRWTSQPPRP 442
Score = 367 (134.2 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
Identities = 96/296 (32%), Positives = 160/296 (54%)
Query: 93 DARKSG--VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFET 149
+A SG +A+L+V +L + L E F G I+S +V +S G+ ++ F+
Sbjct: 2 NASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + I + + ++ + S N+F+KNL+ + + L +
Sbjct: 62 PADAERALDTMNFEMLKGQPIRI-MWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S +A DE+G SRGFGFV+F+ + A++A+ MNG ++ + ++ + +
Sbjct: 118 TFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L R L++ +N+YVKN+ DV ++ L+ FSQ G + S KVMRD
Sbjct: 177 REREAELG--------ARALEF--TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++ FGFV F EEA KAV +G + + LY AQ++ +RQ L+ ++ Q
Sbjct: 227 SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 115 (45.5 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 28/80 (35%), Positives = 38/80 (47%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVE 598
MLAA +QKQ++GERLYPL+ L KITGM K++
Sbjct: 535 MLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKID 594
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV VL+ +A + +H
Sbjct: 595 EAVAVLQAHQAMEQPKAYMH 614
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 1002 (357.8 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 198/413 (47%), Positives = 282/413 (68%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD++G SRGFGFVNF ++A++A+
Sbjct: 190 FTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVM 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE+
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G +L KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLYYTTPPGIVSQV--PP 419
QRKE+R+A L QY Q ++ + ++ S + P+ Y+ P + ++ PP
Sbjct: 369 QRKEERKAILTNQYMQRLSTVRALGGPLLGSFHQPTSYFL--PSVPQKLDRPP 419
Score = 374 (136.7 bits), Expect = 3.4e-40, Sum P(2) = 3.4e-40
Identities = 91/288 (31%), Positives = 159/288 (55%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I + + ++ + S N+F+KNL+ + + L + FS FG I
Sbjct: 70 DTMNFEVIKGQPIRI-MWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + D++G SRGFGFV+F+ + A++A+ MNG ++ + ++ + + ERE L
Sbjct: 126 LSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELG 184
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
R +++ +N+YVKN+ DV ++ L+ FS+ G + S KVMRD+ G ++GFG
Sbjct: 185 --------ARAMEF--TNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F EEA KAV +G + + LYV AQ++ +RQ+ L+ ++ Q
Sbjct: 235 FVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQ 282
Score = 253 (94.1 bits), Expect = 7.9e-26, Sum P(2) = 7.9e-26
Identities = 65/195 (33%), Positives = 104/195 (53%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +I+ Q R + K N+++KN++D
Sbjct: 66 ERALDTMNFEVI------------KGQPIRIMWSQ----RDPGLRKSGVGNIFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ D+ G ++GFGFV F + E A +A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + +R+ L
Sbjct: 169 FVGHFKSRREREVEL 183
Score = 117 (46.2 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
Identities = 29/82 (35%), Positives = 41/82 (50%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
++ ++P + MLAA +QKQ++GERLYPL+ L KITGM
Sbjct: 564 ILGQEP-LTASMLAAAPLHEQKQMIGERLYPLIYNTHTQLAGKITGMLLEIDNSELLLML 622
Query: 588 XXXXXXAVKVEEAVQVLKLSEA 609
KVEEA+ VL+ +A
Sbjct: 623 ESPESLNAKVEEALAVLQAHQA 644
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 1009 (360.2 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 208/445 (46%), Positives = 289/445 (64%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD++G SRGFGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE+
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY---Q 426
QRKE+R+A L QY Q ++ + ++ S Y P V Q PP Y
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLPA--VPQ-PPAQAPYYGSGP 425
Query: 427 PLGLRTGWRANGFVPPTRPAFQVSP 451
P+ W A PP RP+ P
Sbjct: 426 PIQPAPRWTAQ---PP-RPSSAYPP 446
Score = 380 (138.8 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 93/288 (32%), Positives = 157/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I + + ++ + S N+F+KNL+ + + L + FS FG I
Sbjct: 70 DTMNFEVIKGQPIRI-MWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DE+G SRGFGFV+F+ + A+ A+ MNG ++ + ++ + + ERE L
Sbjct: 126 LSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELG 184
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
R +++ +N+YVKN+ DV ++ L+ FSQ G + S KVMRD+ G ++GFG
Sbjct: 185 --------ARAMEF--TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F EEA KAV +G + + LYV AQ++ +RQ L+ ++ Q
Sbjct: 235 FVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 256 (95.2 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 66/195 (33%), Positives = 104/195 (53%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +I+ Q R + K N+++KN++D
Sbjct: 66 ERALDTMNFEVI------------KGQPIRIMWSQ----RDPGLRKSGVGNIFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G ++GFGFV F + E A A++T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + +R+ L
Sbjct: 169 FVGHFKSRREREVEL 183
Score = 109 (43.4 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 30/82 (36%), Positives = 40/82 (48%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA +QKQ++GERL+PLV L KITGM
Sbjct: 528 VPGQEP-LTASMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLML 586
Query: 588 XXXXXXAVKVEEAVQVLKLSEA 609
KVEEA+ VL+ +A
Sbjct: 587 ESPESLNAKVEEALAVLQAHQA 608
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 1001 (357.4 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 210/452 (46%), Positives = 294/452 (65%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E L + FS+FGKI S+ + RD++G SRGFGFVNF+ +DA++A+
Sbjct: 190 FTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVT 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE+
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F+ G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFAPYGMITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQ-- 426
QRKE+R+A L QY Q ++ + + ++ S P+ Y+ P + PP Y
Sbjct: 369 QRKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTSYFL--PAVPQ--PPAQSPYYASG 424
Query: 427 -PLGLRTGWRANGFVPPTRP--AFQVSPLPVN 455
P+ W A PP RP A V P V+
Sbjct: 425 PPVQPPPRWTAQ---PP-RPSSASVVRPAAVS 452
Score = 375 (137.1 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 93/288 (32%), Positives = 156/288 (54%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I + + ++ + S N+F+KNL+ + + L + FS FG I
Sbjct: 70 DTMNFEVIKGQPIRI-MWSQRDPGLRKSGVG---NVFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + D++G SRGFGFV+F+ + A+ A+ MNG ++ + ++ + + ERE L
Sbjct: 126 LSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
R L++ +N+YVKN+ DV + L+ FSQ G I S KVMRD+ G ++GFG
Sbjct: 185 --------ARALEF--TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F E+A KAV +G + + LYV AQ++ +RQ L+ ++ Q
Sbjct: 235 FVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 257 (95.5 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
Identities = 67/195 (34%), Positives = 104/195 (53%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +I+ Q R + K NV++KN++D
Sbjct: 66 ERALDTMNFEVI------------KGQPIRIMWSQ----RDPGLRKSGVGNVFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ D+ G ++GFGFV F + E A A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + +R+A L
Sbjct: 169 FVGHFKSRREREAEL 183
Score = 117 (46.2 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 527 GVMARKPDMLNGMLAAPSP-EQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXX 585
GV + + L + A +P +QKQ++GERLYPL+ L KITGM
Sbjct: 520 GVRVPRQEPLTASVLAAAPLHEQKQMIGERLYPLIYNMHTQLAGKITGMLLEIDNSELLL 579
Query: 586 XXXXXXXXAVKVEEAVQVLKLSEA 609
+ KVEEA+ VL+ +A
Sbjct: 580 MLESPESLSAKVEEALAVLQAHQA 603
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
Identities = 246/628 (39%), Positives = 360/628 (57%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY+GDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA--K 189
E G S+G+GFV FET E+AN AI+ +NG + D++++VG F + +R L A +
Sbjct: 131 VCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E FS FG S+ + D++G SRGFGFVN+ N ++A++A+
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +++Y RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + D+
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFLPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q +A + ++ S P+ Y+ + + Q P R P+
Sbjct: 369 QRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLSA---MPQPPNRTFYSPNPV 425
Query: 429 G-LRTG--WRANGFVPPT-RPAFQVSPL--PVNPKHXXXXXXXX--XXXXLPQVGAHYMX 480
+R W ++ PP +P +PL V P+ +P+V H
Sbjct: 426 APVRPAPQWASHQSRPPQYQPP---TPLMRAVQPRRMSSNISTMKQASTQVPRVAQHSQR 482
Query: 481 XXXXXXXXXXXXXXXXXGGQSKYVPNGR----IRELNK-GSGVSLGTFNSGGVMARKPDM 535
+ +P+ + +R + S L V+ + +
Sbjct: 483 VANIGTQTAGARAQVNPS-MMRTMPHYKYSCGVRNVQPIVSSTHLQQVMEPAVLMQGQEP 541
Query: 536 LNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXA 594
L +LA P++QKQ+LGER+YP++ + P L KITGM
Sbjct: 542 LTASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLH 601
Query: 595 VKVEEAVQVLKLSEAKVSTQEAIHPNYL 622
KVEEAV VL+ +AK + Q++ P+ +
Sbjct: 602 SKVEEAVAVLQAHQAKENAQKSAQPSLI 629
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
Identities = 245/618 (39%), Positives = 350/618 (56%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY+GDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FG+I+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA--K 189
E G S+G+GFV FET+E+AN AI+ +NG + D++++VG F + +R L A +
Sbjct: 131 VCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E FS FG S+ + D +G SRGFGFVN+ N ++A++A+
Sbjct: 190 FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVT 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +++Y RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + D+
Sbjct: 250 EMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITS KVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGTITSTKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYY--TTP-PGIVSQVPPRPGLMY 425
QRKE+R+A L QY Q +A + ++ S P+ Y+ T P P + P P
Sbjct: 369 QRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPNPVAPV 428
Query: 426 QPLGLRTGWRANGFVPPTR--PAFQVSPLPVNPKHXXXXXXXXXXXXLPQVGAHYMXXXX 483
+P W ++ PP PA + +P H +P+V
Sbjct: 429 RPA---PQWASHQSRPPQYQPPAPLMRAVPPRRMHSNISTMKQASTQVPRVPLQSQRVAN 485
Query: 484 XXXXXXXXXXXXXXG---GQSKYVPNGRIRELNK-GSGVSLGTFNSGGVMARKPDMLNGM 539
Y + +R + GS L V+ + + L
Sbjct: 486 IGTQTAGARAQVNASIMRAMPHYKYSCGVRNVQPIGSSAHLQQVLEPAVLMQGQEPLTAS 545
Query: 540 LAAPSP-EQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVE 598
L A +P ++QKQILGER+YPL+ + P L KITGM KVE
Sbjct: 546 LLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVE 605
Query: 599 EAVQVLKLSEAKVSTQEA 616
EAV VL+ +AK S ++
Sbjct: 606 EAVAVLQAHQAKESAPKS 623
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 244/618 (39%), Positives = 346/618 (55%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RV +D T RS Y VNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP R+SGV N+F+KNL ++IDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKGHGFV FETEE+A AIE +NG + D++++VG+F + +R L + +
Sbjct: 131 VCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN + ++ L F +FG++ S+ + DE G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y AQKK +R L+ +FE+ ++R ++Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITS KVM E G +KGFGFVCFSSPEEA+KAV+ +G ++ KPLYVA+A
Sbjct: 310 LQKEFSPFGTITSTKVMT-EGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY---PSLYYTTP-PGIVSQVPPRPGLMY 425
QRKE+RQAHL QY Q MA + S N + + Y PS Y P + P P +
Sbjct: 369 QRKEERQAHLTNQYIQRMASVR-SGPNSLINAYQPAPSGYSVAAVPQTQNCAPCCPSQIV 427
Query: 426 QPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHXXXXXXXXXXXXLPQVGAHYMXXXXXX 485
QP T W A G P P + P PK +PQV A
Sbjct: 428 QP-SPSTRWTAQGARPHPFPNVSGASHPAAPK-SSFTTVRPSSSHVPQVMAAQRITNTSA 485
Query: 486 XXXXXXXXXXXXGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM-LNGM----- 539
+ P I + +GV + + ++P + + G
Sbjct: 486 QTTGQRPALASSPATT---PVRSIPQYKYATGVRNSQQHLNAQLVQQPSVCIQGQEPWTA 542
Query: 540 -LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVE 598
+P++QKQ+LGERL+PL++ P L KITGM + +
Sbjct: 543 STLGTAPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHMLDSPESLCSRAQ 602
Query: 599 EAVQVLKLSEAKVSTQEA 616
EAV L+ +A + Q+A
Sbjct: 603 EAVSALQAHQANEAAQKA 620
Score = 386 (140.9 bits), Expect = 1.6e-33, P = 1.6e-33
Identities = 96/288 (33%), Positives = 154/288 (53%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F + G I+S +V +S G+ V FE A A+
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K + + + ++ + S N+F+KNL+ + + L + FS FG I
Sbjct: 70 DTMNFDVIKGKPVRI-MWSQRDPSLRRSGVG---NVFIKNLNKTIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G GFV+F+ + A RA+E MNG ++ + ++ + + + ERE
Sbjct: 126 LSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREA--- 181
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ + KE +NVY+KN D + D+ L F + G + S KVM DE G +KGFG
Sbjct: 182 -ELGTRTKEF------TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F E+A KAV+ +G L+ K +YV AQ+K DR L+ ++ Q
Sbjct: 235 FVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQ 282
Score = 245 (91.3 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 67/195 (34%), Positives = 104/195 (53%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ VNF+ P DA
Sbjct: 6 PGCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +Q R+ LR + + NV++KN++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQ----RDPSLR-------RSGV-----GNVFIKNLNKT 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G +KG GFV F + E A +A+ +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A L
Sbjct: 169 FVGQFKSRKEREAEL 183
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 702 (252.2 bits), Expect = 6.4e-108, Sum P(3) = 6.4e-108
Identities = 147/310 (47%), Positives = 206/310 (66%)
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAA 188
V E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A
Sbjct: 98 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 156
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A+
Sbjct: 157 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 216
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 217 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 276
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 277 RLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 335
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY-----P-----SLYYTTPP 411
AQRKE+RQAHL QY Q MA + VI PSGY P + YY PP
Sbjct: 336 AQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PP 393
Query: 412 GIVSQVPPRP 421
++Q+ P P
Sbjct: 394 SQIAQLRPSP 403
Score = 405 (147.6 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 99/259 (38%), Positives = 149/259 (57%)
Query: 43 VCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI----SWSCRDPD--ARK 96
VC ++ G S YG+V+F + A RAIE N L+ + + + S R+ + AR
Sbjct: 99 VCDEN--G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 155
Query: 97 SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAA 156
N+++KN E +D+ RL+++F FG +S KV T E GKSKG GFV FE E A A
Sbjct: 156 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 215
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSDVTE 204
++ +NG + K+IYVGR KK +R + +Y NL++KNLD + +
Sbjct: 216 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 275
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
E L ++FS FG I S + E G S+GFGFV F +P++A +A+ MNG ++ +K LY A
Sbjct: 276 ERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 334
Query: 265 RAQKKAEREQILRHQFEEK 283
AQ+K ER+ L +Q+ ++
Sbjct: 335 LAQRKEERQAHLTNQYMQR 353
Score = 249 (92.7 bits), Expect = 6.4e-108, Sum P(3) = 6.4e-108
Identities = 51/96 (53%), Positives = 62/96 (64%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGV 99
DA RA++ N + GK +RI WS RDP RKSGV
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGV 98
Score = 240 (89.5 bits), Expect = 6.3e-28, Sum P(2) = 6.3e-28
Identities = 69/205 (33%), Positives = 105/205 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 160 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 218
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 219 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 277
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 278 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 336
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 337 QRKEER-----QAHLTNQYMQRMAS 356
Score = 150 (57.9 bits), Expect = 6.4e-108, Sum P(3) = 6.4e-108
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 507 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 565
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 566 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 596
Score = 144 (55.7 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 184 PS-PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNP 241
PS P+ +L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 242 DDARRALEAMNGSVIGSK 259
DA RAL+ MN VI K
Sbjct: 63 ADAERALDTMNFDVIKGK 80
Score = 108 (43.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD + G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQR 89
Score = 82 (33.9 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYV 172
A A++ +N + K + +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI 84
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 933 (333.5 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
Identities = 193/392 (49%), Positives = 261/392 (66%)
Query: 49 TGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLI 108
T RS Y YVNF P DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 62
Query: 109 ESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDK 168
+SIDN L + F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D+
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 121
Query: 169 RIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE 226
+++VGRF + +R L + A ++TN+++KN D+ +E L + F KFG S+ + DE
Sbjct: 122 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 181
Query: 227 NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKE 286
+G S+GFGFV+F+ +DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++
Sbjct: 182 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 241
Query: 287 RILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEE 346
RI +Y+G N+YVKN+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEE
Sbjct: 242 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEE 300
Query: 347 ASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------P 399
A+KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA + VI P
Sbjct: 301 ATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPP 360
Query: 400 SGY-----P-----SLYYTTPPGIVSQVPPRP 421
SGY P + YY PP ++Q+ P P
Sbjct: 361 SGYFMAAIPQTQNRAAYY--PPSQIAQLRPSP 390
Score = 442 (160.7 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
Identities = 104/289 (35%), Positives = 164/289 (56%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D + YG+V+F + A RAIE
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQEAAERAIEK 112
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG
Sbjct: 113 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 172
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 173 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 232
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 233 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 291
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 292 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 340
Score = 240 (89.5 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 69/205 (33%), Positives = 105/205 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 147 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 205
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 206 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 264
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 265 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 323
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 324 QRKEER-----QAHLTNQYMQRMAS 343
Score = 150 (57.9 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 494 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 552
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 553 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 583
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 802 (287.4 bits), Expect = 5.7e-107, Sum P(3) = 5.7e-107
Identities = 157/326 (48%), Positives = 222/326 (68%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D
Sbjct: 55 PHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTAD 114
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 115 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 174
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E+G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR
Sbjct: 175 ILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 234
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPD 242
A +TN+++KN++ +VT++ F K+G + S +ARD E G SRGFGFVNF + +
Sbjct: 235 DEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
DA +A++ +N + LY RAQKK ERE+ LR +E R+E+ KY+G N+Y+KN+D
Sbjct: 295 DASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLD 354
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRD 328
D+V DE+L+ FS+ G ITSAKVMRD
Sbjct: 355 DEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 411 (149.7 bits), Expect = 6.3e-46, Sum P(2) = 6.3e-46
Identities = 100/289 (34%), Positives = 161/289 (55%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158
A+L+V L S+ L E+F G++ S +V +S G+ +V + T A+E
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKFG 215
LN T + + I S R PA + T N+F+KNLD + + L + F+ FG
Sbjct: 121 ELNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG 173
Query: 216 KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI 275
I S +A+DENG S+G+GFV+++ + A +A++ +NG ++ K +Y K +R+
Sbjct: 174 NILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS- 232
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINK 334
+F+E +K +N+YVKNI+ +VTD+E + F + G +TS+ + RD E G ++
Sbjct: 233 ---KFDE------MKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSR 283
Query: 335 GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
GFGFV F+S E+ASKAV + H + LYV AQ+K +R+ L+ Y
Sbjct: 284 GFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSY 332
Score = 256 (95.2 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
Identities = 79/239 (33%), Positives = 122/239 (51%)
Query: 149 TEESANAAIENLNG---TTVGDK--RIYVGRFIKKSDRVLPSPAAKY----TNLFMKNLD 199
T + ANA N+NG TTV + G I + PS AA + +L++ LD
Sbjct: 14 TSDLANA---NMNGGEKTTVNTNVGASFTGEEIDTAGPT-PSSAAPHPQASASLYVGELD 69
Query: 200 SDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGS 258
VTE L E FS+ G +AS+ + RD S G+ +VN++ D +ALE +N ++I
Sbjct: 70 PSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKG 129
Query: 259 KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCG 318
+ +Q R+ LR K NV++KN+D + ++ L F+ G
Sbjct: 130 RPCRIMWSQ----RDPALR------------KTGQGNVFIKNLDVAIDNKALHDTFAAFG 173
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
I S KV +DE G +KG+GFV + + E AS+A+ +G +L+ K +YV K+DRQ+
Sbjct: 174 NILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS 232
Score = 162 (62.1 bits), Expect = 5.7e-107, Sum P(3) = 5.7e-107
Identities = 46/123 (37%), Positives = 70/123 (56%)
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY-AQ 385
+ + G +KGFGFVCF++P++A+KAV + M++ KPLYVA+AQRK+ R+ L+ A+
Sbjct: 426 KSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQAR 485
Query: 386 HMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVP-PRPGLMYQPLGLRTGWRANGFVP--P 442
+ ++ ++A +G P Y P V P +PG M P G R G +P P
Sbjct: 486 NQLRMQQAAA---AAGMPQQYMQAP---VFYGPGSQPGFM-PPAGGRGMPYPQGGMPMQP 538
Query: 443 TRP 445
RP
Sbjct: 539 GRP 541
Score = 129 (50.5 bits), Expect = 7.9e-16, Sum P(3) = 7.9e-16
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 223 ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEE 282
++ + G S+GFGFV F NPDDA +A+ MN ++ +K LY A AQ+K R+ L +
Sbjct: 425 SKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQA 484
Query: 283 KRKERI 288
+ + R+
Sbjct: 485 RNQLRM 490
Score = 128 (50.1 bits), Expect = 5.7e-107, Sum P(3) = 5.7e-107
Identities = 38/111 (34%), Positives = 51/111 (45%)
Query: 499 GQSKYVPNGRIRELNKGSGVSLGTFNSG---GVM-ARKPDMLNGMLAA--PSPEQQKQIL 552
G + PN R + G G + G +G G A P+ L G LAA +P QQKQIL
Sbjct: 625 GLPGFPPNARQQGPGAGRGAAAGRAPAGAPAGARGAGAPEGLQGQLAAVADNPGQQKQIL 684
Query: 553 GERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVEEAVQV 603
GE ++P ++ P+L KITGM KV+EA+ V
Sbjct: 685 GEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEALAV 735
Score = 81 (33.6 bits), Expect = 6.1e-11, Sum P(3) = 6.1e-11
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
S+ GKSKG GFV F + A A+ +N V +K +YV +K R
Sbjct: 427 SKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVR 474
Score = 74 (31.1 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 47 STTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKN 106
S G+S +G+V F +P DA +A+ N ++ K L ++ + R D RK+ + +
Sbjct: 427 SKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRK-DVRKNQL-----EQ 480
Query: 107 LIESIDNVRLQE 118
I++ + +R+Q+
Sbjct: 481 SIQARNQLRMQQ 492
Score = 71 (30.1 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTT 49
+LY+ +L +V D +L FSEF + S +V +DS T
Sbjct: 347 NLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 962 (343.7 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
Identities = 201/407 (49%), Positives = 268/407 (65%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T ASLYVGDLHPDV + LF+ FS + S+RVC+D+ T S Y YVNF P DA RA
Sbjct: 30 TMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERA 89
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
++ N LHGK +RI WS RDP R+SG N+F+KNL + IDN + + F FGNI+SC
Sbjct: 90 MDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 149
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS--DRVLPSPA 187
KVA EDG SKG+GFV FETEE+A AI+ +NG + K+++VG+F ++ +R L A
Sbjct: 150 KVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETA 209
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
++TN+++KN +E L + F+KFG I S + E G S+GFGFV F NP++A A
Sbjct: 210 KQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETA 268
Query: 248 LEAMNGSVI-GSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
++A++ S I G+ + L+ RAQKK+ER L+ + E+ + ER+ KY+G N+YVKN+D+ V
Sbjct: 269 VQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETV 328
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
D+ LK F G ITSAKVM DE G +KGFGFVCF PEEA+ AV + M+ KPLY
Sbjct: 329 DDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLY 388
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG 412
VAIAQRKEDR+A L QY Q +A + NV P ++Y T PG
Sbjct: 389 VAIAQRKEDRRAQLASQYMQRLASMR-MHGNV-PGA--AMYNPTQPG 431
Score = 119 (46.9 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG-INKGFGFVCFSSPEEASK 349
Y +++YV ++ DV + L FS G + S +V RD ++ G+ +V F P +A +
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + LH KP+ + +QR
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQR 110
Score = 116 (45.9 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
Identities = 30/81 (37%), Positives = 41/81 (50%)
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL--VAKITGMXXXXXXXXX 583
G V+ + + + MLAA +P++QKQ+LGER+Y L+EK P KITGM
Sbjct: 560 GIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSEL 619
Query: 584 XXXXXXXXXXAVKVEEAVQVL 604
KV+EA VL
Sbjct: 620 IMMLQDSELFRSKVDEAASVL 640
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 986 (352.1 bits), Expect = 3.1e-106, Sum P(2) = 3.1e-106
Identities = 206/461 (44%), Positives = 296/461 (64%)
Query: 2 AVVPPTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVN 59
+V P+ T P ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN
Sbjct: 68 SVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVN 127
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
F + D +A++ N+T + G+ RI WS RDP RK G N+F+KNL +IDN L +
Sbjct: 128 FHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDT 187
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FG I+SCKVA E G +KG+GFV F++ ESANAAIE++NG + DK++YVG + +
Sbjct: 188 FSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRR 247
Query: 180 DRVLPSPAAK--YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVN 237
+R A K +TN+++KNLD+++TE+ + F +FG+I SL + +D+N RGFGFVN
Sbjct: 248 ERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVN 307
Query: 238 FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVY 297
+ N + A++A++ +N K LY RAQKK ERE+ LR ++E+ + E++ KY+G N++
Sbjct: 308 YANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLF 367
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGY 357
+KN+ D+V DE LKA FS GTITSAK+M DE+G +KGFGFVC+++PEEA+KAV +
Sbjct: 368 IKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQR 427
Query: 358 MLHRKPLYVAIAQRKEDRQAHLQLQY-AQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVS 415
ML KPLYVA+AQRKE R++ L+ Q A++ ++ A +G P++ Y T P
Sbjct: 428 MLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAA--AGIPAVQYGATGP---- 481
Query: 416 QVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNP 456
L+Y P G NG P P P+P+ P
Sbjct: 482 -------LIYGPGGYPIPAAVNGRGMPMVPGHN-GPMPMYP 514
Score = 85 (35.0 bits), Expect = 3.1e-106, Sum P(2) = 3.1e-106
Identities = 24/66 (36%), Positives = 30/66 (45%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVEE 599
LAA E +KQ+LGE LYP V + L KITGM +V E
Sbjct: 577 LAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNE 636
Query: 600 AVQVLK 605
A+ VL+
Sbjct: 637 AIGVLQ 642
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 948 (338.8 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 197/439 (44%), Positives = 282/439 (64%)
Query: 7 TATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
T TP +SLYVGDL P+V++ LF+ F++ ++++RVC+D+ T RS Y YVN+ +
Sbjct: 3 TNFTPISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGA 62
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
DA RA++ N+T + GK RI WS RDP RKSGV N+F+KNL + ID+ L + F FG
Sbjct: 63 DAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG 122
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP 184
NI+SCKV T + SKG GFV +ET+ESA+ AI +NG + ++++VG F +R P
Sbjct: 123 NILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQP 182
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+ K+TN+F KNL DV + L E ++G+I ++ I D+ G S+GFGF NF++ + A
Sbjct: 183 TEV-KFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAA 241
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+ +E NG + K +YA RAQKK ERE L+H FE K Y+G N+Y+KNIDD
Sbjct: 242 KNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETK-------YQGVNLYIKNIDDS 294
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGI-NKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ +++L+ FSQ GTITSA VM+D+K +KGFGFVC+++P+EA++AV +G M+ KP
Sbjct: 295 IDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKP 354
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHM-AGIEGSSANVIPSGYPSLYYTTP--PGIV-SQVPP 419
LYVA+AQRK+ R+A L++Q+ Q GI SG P + P P +V Q+ P
Sbjct: 355 LYVALAQRKDIRRAQLEMQHQQKFKTGIRQQMPPTYGSG-PVFFTPAPVNPQVVYQQMMP 413
Query: 420 RP-GLMYQPLGLRTGWRAN 437
RP QP+G+ G AN
Sbjct: 414 RPRNWNGQPVGVPQGQYAN 432
Score = 201 (75.8 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 55/187 (29%), Positives = 92/187 (49%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
PT +++ +L DV +L + ++ + ++ + D G+S +G+ NF S
Sbjct: 182 PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEA 240
Query: 66 AIRAIEVKNHTQLHGKML---RISWSC-RDPDARKS------GVANLFVKNLIESIDNVR 115
A +E +N HGK + R R+ + + + GV NL++KN+ +SIDN +
Sbjct: 241 AKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGV-NLYIKNIDDSIDNDK 299
Query: 116 LQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGR 174
L+E+F FG I S V + SKG GFV + + A A+ +NG +G K +YV
Sbjct: 300 LREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVAL 359
Query: 175 FIKKSDR 181
+K R
Sbjct: 360 AQRKDIR 366
Score = 108 (43.1 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXX-XXXXXXXXXXXXXXA 594
L ++ PS +QQ LGE LYPL+ +PDL KITGM A
Sbjct: 493 LQSIINLPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLA 552
Query: 595 VKVEEAVQVL 604
K+ EA++VL
Sbjct: 553 DKIREALEVL 562
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
Identities = 243/612 (39%), Positives = 340/612 (55%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLHPDVT+ L++ FS ++ S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP R+SG+ N+F+KNL SIDN L + F FG+I+S KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+E G S+G GFV FET E+A AI +NG + D++++VG F + R L + A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL D+ E+ L + FS+FGK S+ + RD NG SRGFGF+NF+ ++A++A++
Sbjct: 190 FTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+AER+ L+ +FE+ ++ER +Y+G N+YVKN+DD + D+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS G ITSAKVM E +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LKEVFSTYGVITSAKVMT-ESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMA-----GIEGSSANVIPSGYPS----LYYTTPPGIVSQVPPR 420
QRKE+R+A L QY + ++ + ++ ++P+ + S +YY++ ++ + P
Sbjct: 369 QRKEERKAILTNQYRRRLSRSVLSSFQQPTSYLLPAVHQSTTQTMYYSSAS--IAPMQPD 426
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHXXXXXXXXXXXXLPQVGAHYMX 480
P QP G + PP A V PL P H QV
Sbjct: 427 PRWTAQPHG------PSSTCPPA--ASVVQPLSTAP-HPCIHLSSASQAS-SQVPHTQRV 476
Query: 481 XXXXXXXXXXXXXXXXXGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGML 540
GQ G ++ GV T G ML+
Sbjct: 477 VNIGTQTTGPGGEGSCIPGQPLLAHRGS-SAVHSAHGVQESTVYVPGHQPLTVSMLD--- 532
Query: 541 AAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVEEA 600
AAP EQ KQ++GERLY L+ L KITGM K EEA
Sbjct: 533 AAPLHEQ-KQMIGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLESPESLHAKAEEA 591
Query: 601 VQVLKLSEAKVS 612
V VLK A S
Sbjct: 592 VAVLKAHRAMES 603
Score = 371 (135.7 bits), Expect = 8.6e-32, P = 8.6e-32
Identities = 95/296 (32%), Positives = 159/296 (53%)
Query: 93 DARKSG--VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFET 149
D R G +++L+V +L + L EMF G I+S +V +S G+ ++ F+
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + I I S R + N+F+KNL++ + + L +
Sbjct: 62 PADAERALDTMNFEMIKGQPIR----IMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + +E+G SRGFGFV+F+ + A++A+ MNG ++ + ++ + +
Sbjct: 118 TFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
+RE L R L + +N+YVKN+ D+ ++ L+ FSQ G S KVMRD
Sbjct: 177 QKREAELG--------ARALGF--TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGF+ F EEA KAV+ +G + + LYV AQ++ +RQ L+ ++ Q
Sbjct: 227 NGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQ 282
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 889 (318.0 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 190/426 (44%), Positives = 268/426 (62%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEE-AS-KAV-NTFHGYM 358
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFS + AS +AV N
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSYMQRMASVRAVPNPVINPY 360
Query: 359 LHRKP--LYVAIAQRKEDRQAHLQ-LQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVS 415
P ++A + ++R A+ Q AQ ++ P + ++ PG +
Sbjct: 361 QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNM-----PGAIR 415
Query: 416 QVPPRP 421
PRP
Sbjct: 416 PAAPRP 421
Score = 422 (153.6 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 101/296 (34%), Positives = 160/296 (54%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREA----ELGARAKEF------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 150 (57.9 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 499 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 557
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 558 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 588
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 884 (316.2 bits), Expect = 2.0e-102, Sum P(2) = 2.0e-102
Identities = 188/403 (46%), Positives = 257/403 (63%)
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
+ A ++TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG--IVSQVPPRP 421
LYVA+AQRKE+RQAHL QY Q MA S +P+ + Y PP ++ +P
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQRMA-----SVRAVPNPVINPYQPAPPSGYFMAAIPQTQ 353
Query: 422 G-LMYQPLG-----LRTG--WRANGFVPPTRPAFQVSPLPVNP 456
Y P R W A G P P FQ P + P
Sbjct: 354 NRAAYYPTNQLAQLARPSPRWTAQGARP--HP-FQNMPGAIRP 393
Score = 445 (161.7 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 105/289 (36%), Positives = 164/289 (56%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D + YG+V+F + A RAIE
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQEAAERAIEK 93
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+E+F FG
Sbjct: 94 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 153
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 154 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 213
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 214 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 272
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 273 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 321
Score = 228 (85.3 bits), Expect = 9.0e-27, Sum P(2) = 9.0e-27
Identities = 66/204 (32%), Positives = 104/204 (50%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L + F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 128 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 186
Query: 73 KNHTQLHGKMLRISWSCRDPDA-----RKSGV-----------ANLFVKNLIESIDNVRL 116
N +L+GK + + + + + RK NL+VKNL + ID+ RL
Sbjct: 187 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 246
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 247 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 305
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 306 RKEER-----QAHLTNQYMQRMAS 324
Score = 151 (58.2 bits), Expect = 2.0e-102, Sum P(2) = 2.0e-102
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 476 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHML 534
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 535 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 565
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 956 (341.6 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
Identities = 192/433 (44%), Positives = 282/433 (65%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
A ASLYVG+L+P V + LF+ FS ++S+RVC+D+ + +S Y YVN+ D
Sbjct: 48 AENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGE 107
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
+AIE N+ + G+ RI WS RDP AR+SG N+F+KNL +IDN L + F FG I+
Sbjct: 108 KAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL 167
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPS 185
SCKVAT E G+SK GFV +ET E+A AAIEN+NG + D+ ++VG+ I K DR
Sbjct: 168 SCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEE 227
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A +TN+++KN+D + +EE + FS FGKI S+ + +D++G S+GFGFVNF++ + A
Sbjct: 228 MKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAV 287
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+E +N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N++VKN+DD +
Sbjct: 288 KAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTI 347
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
E+L+ F GTITSAKVM DE G +KGFGFVCF++PEEA+KA+ + M++ KPLY
Sbjct: 348 DSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLY 407
Query: 366 VAIAQRKEDRQAHLQLQY-AQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQVP- 418
VA+AQRK+ R++ L+ Q A++ ++ ++A +P + P ++Y PP P
Sbjct: 408 VALAQRKDVRRSQLEQQIQARNQMRMQNAAAGGLPGQFIPPMFYGQQGFFPPNGRGNAPY 467
Query: 419 --PRPGLMYQPLG 429
P P +M + G
Sbjct: 468 PGPNPQMMMRGRG 480
Score = 78 (32.5 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGM 574
L ++++ +QQK+ILGE LYP + + +P+ KITGM
Sbjct: 541 LAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGM 583
Score = 40 (19.1 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 537 NGMLAAPSPEQQKQILGERLYP-LVEKHKPDLVAKITGM 574
NG P +QQ+Q G YP + K DL A I+ +
Sbjct: 511 NGQNMRPQQQQQQQPRGG-YYPNRNQTSKRDLAAIISSV 548
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 970 (346.5 bits), Expect = 2.2e-101, Sum P(2) = 2.2e-101
Identities = 210/454 (46%), Positives = 287/454 (63%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR-AI 70
ASLYVGDL P V++ L+D FS S++S+RVC+D+ T S Y YVNF + H+A R AI
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF-NDHEAGRKAI 96
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
E N+T + G++ RI WS RDP RK G N+F+KNL IDN L + F FG+I+S K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAA 188
+AT E+GKSKG GFV FE E +A AI+ LNG + + IYV + K+ D L A
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
YTNL++KN++S+ T+E E F+KFG I S + +D +G +GFGFVN++ +DA +A+
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
EA+N S + + LY RAQKK ER +L+ Q+E R E++ KY+G N++VKN+DD V DE
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+L+ F+ GTITSAKVMR E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVAI
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 369 AQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVPP 419
AQRK+ R++ L Q++Y Q A ++A + P ++Y PP V P
Sbjct: 397 AQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNGP 456
Query: 420 RPGLMYQPLGLRTGWRANGFVPPTR--PAFQVSP 451
P M P+G G NG P R P + V P
Sbjct: 457 NPQQM-NPMG---GMPKNGMPPQFRNGPVYGVPP 486
Score = 55 (24.4 bits), Expect = 2.2e-101, Sum P(2) = 2.2e-101
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 546 EQQKQILGERLYPLV--EKHKPDLVAKITGM 574
++Q+Q LGE+LY V + + KITGM
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGM 533
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 887 (317.3 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
Identities = 180/366 (49%), Positives = 253/366 (69%)
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGN
Sbjct: 105 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 164
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKV E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L
Sbjct: 165 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 223
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
+ A ++TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +D
Sbjct: 224 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 283
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A+E MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD
Sbjct: 284 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 343
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ DE+L+ FS G+ITSAKVM ++ G +KGFGFVCFSSPEEA+KAV +G ++ KP
Sbjct: 344 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 402
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLY-YTTPPGIVSQVPPRP 421
LYVA+AQRKE+R+AHL QY Q +AG+ AN I + + P+ Y P V Q RP
Sbjct: 403 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA--VPQAQGRP 460
Query: 422 GLMYQP 427
Y P
Sbjct: 461 PY-YTP 465
Score = 429 (156.1 bits), Expect = 1.7e-51, Sum P(2) = 1.7e-51
Identities = 101/289 (34%), Positives = 163/289 (56%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D + Y +V+F + A +AIE
Sbjct: 140 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YAFVHFETQEAADKAIEK 197
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + A+ N+++KN E +D+ L+E+F FG
Sbjct: 198 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 257
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV GKSKG GFV +E E AN A+E +NG + K I+VGR KK +R
Sbjct: 258 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 317
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ ++Y NL++KNLD + +E L ++FS FG I S + E+G S+GFG
Sbjct: 318 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFG 376
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++GSK LY A AQ+K ER+ L +Q+ ++
Sbjct: 377 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 425
Score = 242 (90.2 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 65/202 (32%), Positives = 111/202 (54%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + +V D L + FS+F SV+V +D + G+S +G+V++ DA +A+E
Sbjct: 232 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 290
Query: 73 KNHTQLHGKMLRISWSCRDPDA-----RK------SGVA-----NLFVKNLIESIDNVRL 116
N ++ GK++ + + + + RK ++ NL++KNL ++ID+ +L
Sbjct: 291 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 350
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
++ F FG+I S KV EDG+SKG GFV F + E A A+ +NG VG K +YV
Sbjct: 351 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 409
Query: 177 KKSDRVLPSPAAKYTNLFMKNL 198
+K +R A TN +M+ +
Sbjct: 410 RKEER-----KAHLTNQYMQRV 426
Score = 133 (51.9 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGM
Sbjct: 604 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 662
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ AK + +
Sbjct: 663 ESPESLRSKVDEAVAVLQAHHAKKEAAQKV 692
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 603 (217.3 bits), Expect = 9.2e-100, Sum P(3) = 9.2e-100
Identities = 120/251 (47%), Positives = 169/251 (67%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P+ +T ASLYVGDL+ DVT+ L++ F+ ++S+RVC+DS T +S Y YVN+ + D
Sbjct: 11 PSFST-ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLAD 69
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++ N+T + G+ R+ WS RDP RKSG N+FVKNL +SIDN L + F FGN
Sbjct: 70 AERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGN 129
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCKVAT E GKSK +GFV +E EESA AIE +NG +G K +YVG FIKKS+R
Sbjct: 130 ILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATND 189
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
K+TNL++KN VTE HL + F+ +G+I S+++ D +R F F+N+ + + A+
Sbjct: 190 --TKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAK 245
Query: 246 RALEAMNGSVI 256
A++ +NG I
Sbjct: 246 NAMDNLNGKKI 256
Score = 310 (114.2 bits), Expect = 9.2e-100, Sum P(3) = 9.2e-100
Identities = 63/150 (42%), Positives = 93/150 (62%)
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
+ +N A++ A + +LY Q +A R IL+ +F+ E K++G N+
Sbjct: 393 SMNNAGSAKKDETAASDCADTPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNL 452
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
Y+KN+DD + D L+ F GTITSAKVMRDEK +KGFGFVCF+S EEA+KAV H
Sbjct: 453 YIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHL 512
Query: 357 YMLHRKPLYVAIAQRKEDRQAHLQLQYAQH 386
+++ KPLYV +A+++E R + LQ ++ H
Sbjct: 513 KIINGKPLYVGLAEKREQRLSRLQQRFRMH 542
Score = 305 (112.4 bits), Expect = 3.3e-31, Sum P(2) = 3.3e-31
Identities = 86/259 (33%), Positives = 134/259 (51%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSKGHGFVQFETEESANAAIE 158
A+L+V +L E + L E+F G++ S +V S KS G+ +V + A A++
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT-NLFMKNLDSDVTEEHLVEKFSKFGKI 217
LN T + + R + S R PS T N+F+KNLD + + L + FS FG I
Sbjct: 76 TLNYTNIKGQP---ARLMW-SHRD-PSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G S+ +GFV++++ + A+ A+E +NG +GSK +Y KK+ER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT--- 187
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
K+ +N+YVKN D VT+ L+ F+ G ITS V D K N+ F
Sbjct: 188 ---------NDTKF--TNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRKFC 234
Query: 338 FVCFSSPEEASKAVNTFHG 356
F+ ++ E A A++ +G
Sbjct: 235 FINYADAESAKNAMDNLNG 253
Score = 220 (82.5 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 62/191 (32%), Positives = 97/191 (50%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L+ DVTE L E F+ G ++S+ + RD S G+ +VN+ N DA
Sbjct: 11 PSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADA 70
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ +N + I + AR + R+ LR K N++VKN+D
Sbjct: 71 ERALDTLNYTNIKGQ---PARLMW-SHRDPSLR------------KSGTGNIFVKNLDKS 114
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV DE G +K +GFV + E A +A+ +G L K +
Sbjct: 115 IDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
Query: 365 YVAIAQRKEDR 375
YV +K +R
Sbjct: 175 YVGPFIKKSER 185
Score = 192 (72.6 bits), Expect = 1.8e-47, Sum P(3) = 1.8e-47
Identities = 48/157 (30%), Positives = 80/157 (50%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+++V +L + + LFD FS F ++ S +V D G+S YG+V++ A AIE
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIEK 163
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N QL K + + + + + NL+VKN +S+ L+++F +G I S
Sbjct: 164 VNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMI 223
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD 167
V D K++ F+ + ESA A++NLNG + D
Sbjct: 224 VKM--DNKNRKFCFINYADAESAKNAMDNLNGKKITD 258
Score = 187 (70.9 bits), Expect = 4.8e-18, Sum P(2) = 4.8e-18
Identities = 50/148 (33%), Positives = 77/148 (52%)
Query: 37 SLASVRVCKDSTTGRSTCYGYVNFL--SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDA 94
S+ + K T S C N L PH + RA + H L K ++ ++
Sbjct: 393 SMNNAGSAKKDETAASDCADTPNILYVGPHQS-RA---RRHAILKAKFDNLNVENKN--- 445
Query: 95 RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESAN 154
+ GV NL++KNL + ID++ L+E+F+ FG I S KV E +SKG GFV F ++E AN
Sbjct: 446 KHQGV-NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEAN 504
Query: 155 AAIENLNGTTVGDKRIYVGRFIKKSDRV 182
A+ ++ + K +YVG K+ R+
Sbjct: 505 KAVTEMHLKIINGKPLYVGLAEKREQRL 532
Score = 171 (65.3 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 53/176 (30%), Positives = 84/176 (47%)
Query: 110 SIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKR 169
S +++ L E GN S + G S + + E +A+ + N VG +
Sbjct: 365 SNNSINLNENNNTAGNNNSTN-NNNNSGSSMNNAGSAKKDETAASDCADTPNILYVGPHQ 423
Query: 170 IYVGR--FIK-KSDRVLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIAR 224
R +K K D + K+ NL++KNLD + + L E F FG I S + R
Sbjct: 424 SRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMR 483
Query: 225 DENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
DE S+GFGFV F + ++A +A+ M+ +I K LY A+K+ +R L+ +F
Sbjct: 484 DEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 539
Score = 133 (51.9 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 34/123 (27%), Positives = 61/123 (49%)
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
K+TNL++KN VTE HL + F+ +G+I S+++ D +R F F+N+ + + A+ A+
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAM 248
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ +NG KK + + ++ K++E G+ D D TD+
Sbjct: 249 DNLNG--------------KKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADKTDK 294
Query: 309 ELK 311
K
Sbjct: 295 NDK 297
Score = 117 (46.2 bits), Expect = 9.2e-100, Sum P(3) = 9.2e-100
Identities = 35/111 (31%), Positives = 47/111 (42%)
Query: 498 GGQSKYVPNGRIR-ELNKGSGVSLGTFNSG-GVMARKPDMLNGM-LAAPSPEQQKQILGE 554
G K+ R R EL + + T N+ V L LA+ P QKQ+LGE
Sbjct: 762 GNNFKFTAQARNRMELPNKNANKVNTMNNNMNVNFNNNSTLTAAALASAPPSMQKQVLGE 821
Query: 555 RLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVEEAVQVLK 605
L+PLV + P L KITGM K++EA+ VL+
Sbjct: 822 NLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 872
Score = 78 (32.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LY+ +L + D L + F F ++ S +V +D +S +G+V F S +A +A+
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKE-QSKGFGFVCFASQEEANKAVTE 509
Query: 73 KNHTQLHGKMLRI 85
+ ++GK L +
Sbjct: 510 MHLKIINGKPLYV 522
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 603 (217.3 bits), Expect = 9.2e-100, Sum P(3) = 9.2e-100
Identities = 120/251 (47%), Positives = 169/251 (67%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P+ +T ASLYVGDL+ DVT+ L++ F+ ++S+RVC+DS T +S Y YVN+ + D
Sbjct: 11 PSFST-ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLAD 69
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++ N+T + G+ R+ WS RDP RKSG N+FVKNL +SIDN L + F FGN
Sbjct: 70 AERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGN 129
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCKVAT E GKSK +GFV +E EESA AIE +NG +G K +YVG FIKKS+R
Sbjct: 130 ILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATND 189
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
K+TNL++KN VTE HL + F+ +G+I S+++ D +R F F+N+ + + A+
Sbjct: 190 --TKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAK 245
Query: 246 RALEAMNGSVI 256
A++ +NG I
Sbjct: 246 NAMDNLNGKKI 256
Score = 310 (114.2 bits), Expect = 9.2e-100, Sum P(3) = 9.2e-100
Identities = 63/150 (42%), Positives = 93/150 (62%)
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
+ +N A++ A + +LY Q +A R IL+ +F+ E K++G N+
Sbjct: 393 SMNNAGSAKKDETAASDCADTPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNL 452
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
Y+KN+DD + D L+ F GTITSAKVMRDEK +KGFGFVCF+S EEA+KAV H
Sbjct: 453 YIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHL 512
Query: 357 YMLHRKPLYVAIAQRKEDRQAHLQLQYAQH 386
+++ KPLYV +A+++E R + LQ ++ H
Sbjct: 513 KIINGKPLYVGLAEKREQRLSRLQQRFRMH 542
Score = 305 (112.4 bits), Expect = 3.3e-31, Sum P(2) = 3.3e-31
Identities = 86/259 (33%), Positives = 134/259 (51%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSKGHGFVQFETEESANAAIE 158
A+L+V +L E + L E+F G++ S +V S KS G+ +V + A A++
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT-NLFMKNLDSDVTEEHLVEKFSKFGKI 217
LN T + + R + S R PS T N+F+KNLD + + L + FS FG I
Sbjct: 76 TLNYTNIKGQP---ARLMW-SHRD-PSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G S+ +GFV++++ + A+ A+E +NG +GSK +Y KK+ER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT--- 187
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
K+ +N+YVKN D VT+ L+ F+ G ITS V D K N+ F
Sbjct: 188 ---------NDTKF--TNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRKFC 234
Query: 338 FVCFSSPEEASKAVNTFHG 356
F+ ++ E A A++ +G
Sbjct: 235 FINYADAESAKNAMDNLNG 253
Score = 220 (82.5 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 62/191 (32%), Positives = 97/191 (50%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L+ DVTE L E F+ G ++S+ + RD S G+ +VN+ N DA
Sbjct: 11 PSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADA 70
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ +N + I + AR + R+ LR K N++VKN+D
Sbjct: 71 ERALDTLNYTNIKGQ---PARLMW-SHRDPSLR------------KSGTGNIFVKNLDKS 114
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV DE G +K +GFV + E A +A+ +G L K +
Sbjct: 115 IDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
Query: 365 YVAIAQRKEDR 375
YV +K +R
Sbjct: 175 YVGPFIKKSER 185
Score = 192 (72.6 bits), Expect = 1.8e-47, Sum P(3) = 1.8e-47
Identities = 48/157 (30%), Positives = 80/157 (50%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+++V +L + + LFD FS F ++ S +V D G+S YG+V++ A AIE
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIEK 163
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N QL K + + + + + NL+VKN +S+ L+++F +G I S
Sbjct: 164 VNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMI 223
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD 167
V D K++ F+ + ESA A++NLNG + D
Sbjct: 224 VKM--DNKNRKFCFINYADAESAKNAMDNLNGKKITD 258
Score = 187 (70.9 bits), Expect = 4.8e-18, Sum P(2) = 4.8e-18
Identities = 50/148 (33%), Positives = 77/148 (52%)
Query: 37 SLASVRVCKDSTTGRSTCYGYVNFL--SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDA 94
S+ + K T S C N L PH + RA + H L K ++ ++
Sbjct: 393 SMNNAGSAKKDETAASDCADTPNILYVGPHQS-RA---RRHAILKAKFDNLNVENKN--- 445
Query: 95 RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESAN 154
+ GV NL++KNL + ID++ L+E+F+ FG I S KV E +SKG GFV F ++E AN
Sbjct: 446 KHQGV-NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEAN 504
Query: 155 AAIENLNGTTVGDKRIYVGRFIKKSDRV 182
A+ ++ + K +YVG K+ R+
Sbjct: 505 KAVTEMHLKIINGKPLYVGLAEKREQRL 532
Score = 171 (65.3 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 53/176 (30%), Positives = 84/176 (47%)
Query: 110 SIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKR 169
S +++ L E GN S + G S + + E +A+ + N VG +
Sbjct: 365 SNNSINLNENNNTAGNNNSTN-NNNNSGSSMNNAGSAKKDETAASDCADTPNILYVGPHQ 423
Query: 170 IYVGR--FIK-KSDRVLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIAR 224
R +K K D + K+ NL++KNLD + + L E F FG I S + R
Sbjct: 424 SRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMR 483
Query: 225 DENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
DE S+GFGFV F + ++A +A+ M+ +I K LY A+K+ +R L+ +F
Sbjct: 484 DEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 539
Score = 133 (51.9 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 34/123 (27%), Positives = 61/123 (49%)
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
K+TNL++KN VTE HL + F+ +G+I S+++ D +R F F+N+ + + A+ A+
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAM 248
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ +NG KK + + ++ K++E G+ D D TD+
Sbjct: 249 DNLNG--------------KKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADKTDK 294
Query: 309 ELK 311
K
Sbjct: 295 NDK 297
Score = 117 (46.2 bits), Expect = 9.2e-100, Sum P(3) = 9.2e-100
Identities = 35/111 (31%), Positives = 47/111 (42%)
Query: 498 GGQSKYVPNGRIR-ELNKGSGVSLGTFNSG-GVMARKPDMLNGM-LAAPSPEQQKQILGE 554
G K+ R R EL + + T N+ V L LA+ P QKQ+LGE
Sbjct: 762 GNNFKFTAQARNRMELPNKNANKVNTMNNNMNVNFNNNSTLTAAALASAPPSMQKQVLGE 821
Query: 555 RLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVEEAVQVLK 605
L+PLV + P L KITGM K++EA+ VL+
Sbjct: 822 NLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 872
Score = 78 (32.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LY+ +L + D L + F F ++ S +V +D +S +G+V F S +A +A+
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKE-QSKGFGFVCFASQEEANKAVTE 509
Query: 73 KNHTQLHGKMLRI 85
+ ++GK L +
Sbjct: 510 MHLKIINGKPLYV 522
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 868 (310.6 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
Identities = 176/358 (49%), Positives = 248/358 (69%)
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 2 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 61
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYT 191
E+G SKG+ FV FET+E+AN AIE +NG + D++++VGRF + +R L + A ++T
Sbjct: 62 DENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT 120
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E M
Sbjct: 121 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+L+
Sbjct: 181 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 240
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS G+ITSAKVM ++ G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQR
Sbjct: 241 KEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 299
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLY-YTTPPGIVSQVPPRPGLMYQP 427
KE+R+AHL QY Q +AG+ AN I + + P+ Y P V Q RP Y P
Sbjct: 300 KEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA--VPQAQGRPPY-YTP 354
Score = 427 (155.4 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 101/289 (34%), Positives = 163/289 (56%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D + Y +V+F + A +AIE
Sbjct: 29 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YAFVHFETQEAANKAIEK 86
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + A+ N+++KN E +D+ L+E+F FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKT 146
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV GKSKG GFV +E E AN A+E +NG + K I+VGR KK +R
Sbjct: 147 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 206
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ ++Y NL++KNLD + +E L ++FS FG I S + E+G S+GFG
Sbjct: 207 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFG 265
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++GSK LY A AQ+K ER+ L +Q+ ++
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 314
Score = 240 (89.5 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 65/202 (32%), Positives = 110/202 (54%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + +V D L + FS+F SV+V +D + G+S +G+V++ DA +A+E
Sbjct: 121 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEE 179
Query: 73 KNHTQLHGKMLRISWSCRDPDA-----RK------SGVA-----NLFVKNLIESIDNVRL 116
N ++ GK + + + + + RK ++ NL++KNL ++ID+ +L
Sbjct: 180 MNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
++ F FG+I S KV EDG+SKG GFV F + E A A+ +NG VG K +YV
Sbjct: 240 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 177 KKSDRVLPSPAAKYTNLFMKNL 198
+K +R A TN +M+ +
Sbjct: 299 RKEER-----KAHLTNQYMQRV 315
Score = 133 (51.9 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGM
Sbjct: 492 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 550
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ AK + +
Sbjct: 551 ESPESLRSKVDEAVAVLQAHHAKKEAAQKV 580
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
Identities = 200/389 (51%), Positives = 266/389 (68%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RV +D TT RS Y VNF DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+FVKNL SID+ L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E A AIE +NG + D++++VGRF + DR L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL D+ +E L + FS+FG S+ + DE+G S+GFGFV+F+ +DAR+A++
Sbjct: 190 FTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQF----EEKRK------ERILKYKGSNVYVK 299
MNG + K +Y RAQKK ER+ L+H+F ++K K +R ++ +G N+YVK
Sbjct: 250 EMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVK 309
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+DD + DE L+ FS GTITSAKV E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 310 NLDDGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 368
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMA 388
KPLYVA+AQRKE+RQAHL QY Q MA
Sbjct: 369 ATKPLYVALAQRKEERQAHLSNQYMQRMA 397
Score = 412 (150.1 bits), Expect = 8.6e-37, P = 8.6e-37
Identities = 99/296 (33%), Positives = 161/296 (54%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFET 149
+P +A+L+V +L + L E F G I+S +V + S G+ V F+
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
E A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFVKNLDRSIDSKTLYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ ++A RA+E MNG + + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
+R+ + + KE +NVY+KN+ +D+ DE L+ FS+ G S KVM DE
Sbjct: 177 RDRQA----ELGARAKEF------TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ 282
Score = 401 (146.2 bits), Expect = 2.5e-35, P = 2.5e-35
Identities = 120/357 (33%), Positives = 164/357 (45%)
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
+ E+ ++R ++ +G N+YVKN+DD + DE L+ FS GTITSAKV E G +KGFGF
Sbjct: 289 KIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGF 347
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANV 397
VCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA + +
Sbjct: 348 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAVPNPGI 407
Query: 398 IP----SGYPSLYYT-TPP--GIVSQVPPRPGLMYQPL--GLRTGWRANGF------VPP 442
P G + T T P + P P G G RA+ F + P
Sbjct: 408 NPFQPAQGLSGYFMTATAPTQNRGTYYAPNQTTQQGPSARGSAQGTRAHPFQNMSSAIHP 467
Query: 443 --TRPAFQVSPLPVNPKHXXXXXXXXXXXXLPQVGAHYMXXXXXXXXXXXXXXXXXXGGQ 500
T P+F S P +G H Q
Sbjct: 468 SNTMPSFSTS----GPTSSQAVRHRTASTSTQMMGPHPAAASTAAAPAARTVT------Q 517
Query: 501 SKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLV 560
KY R + + + T S K + MLA+ P+ QKQ+LGE L+ L+
Sbjct: 518 YKYTAGVRNPPQHLNTQPQVTTQRSAVSAQGKESLTVSMLASAPPQAQKQMLGEWLFSLI 577
Query: 561 EKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
+ P L KITGM KV+EA+ VL+ +AK ++Q+A+
Sbjct: 578 QAMHPALAGKITGMLLEIDNLELRHMLESPECLHTKVDEAIAVLQAHQAKETSQKAV 634
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 803 (287.7 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 162/331 (48%), Positives = 231/331 (69%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
N+F+KNL +SIDN L + F FGNI+SCKV E+G SKG+ FV FET+E+A+ AIE +
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 161 NGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
NG + D++++VGRF + +R L + A ++TN+++KN +V +E L E FS+FGK
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 120
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S+ + RD NG S+GFGFV+++ +DA +A+E MNG I K+++ RAQKK ER+ L+
Sbjct: 121 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 180
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
+FE+ ++ERI +Y+G N+Y+KN+DD + DE+L+ FS G+ITSAKVM ++ G +KGFGF
Sbjct: 181 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGF 239
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI 398
VCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+R+AHL QY Q +AG+ AN I
Sbjct: 240 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAI 299
Query: 399 PSGY-PSLY-YTTPPGIVSQVPPRPGLMYQP 427
+ + P+ Y P V Q RP Y P
Sbjct: 300 LNQFQPAAGGYFVPA--VPQAQGRPPY-YTP 327
Score = 430 (156.4 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 101/289 (34%), Positives = 164/289 (56%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D + Y +V+F + A +AIE
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YAFVHFETQEAADKAIEK 59
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + A+ N+++KN E +D+ L+E+F FG
Sbjct: 60 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 119
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV +GKSKG GFV +E E AN A+E +NG + K I+VGR KK +R
Sbjct: 120 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 179
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ ++Y NL++KNLD + +E L ++FS FG I S + E+G S+GFG
Sbjct: 180 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFG 238
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++GSK LY A AQ+K ER+ L +Q+ ++
Sbjct: 239 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 287
Score = 130 (50.8 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGM KV+
Sbjct: 464 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 523
Query: 599 EAVQVLKLSEAKVSTQEAI 617
EAV VL+ AK + +
Sbjct: 524 EAVAVLQAHHAKKEAAQKV 542
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 166/362 (45%), Positives = 245/362 (67%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 187
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 188 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 247 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI +G +Y+KN+DD + DE+
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A+KA+ +G +L KPL +A+A
Sbjct: 367 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Query: 370 QR 371
QR
Sbjct: 426 QR 427
Score = 383 (139.9 bits), Expect = 3.4e-35, P = 3.4e-35
Identities = 102/294 (34%), Positives = 153/294 (52%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
A A++ +N + K I + + D L N+F+KNLD + + L E FS
Sbjct: 122 AQKALDTMNFDIIKGKSIRL--MWSQRDAYLRRSGIG--NVFIKNLDKSIDNKTLYEHFS 177
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVI-GSKVLYAARAQKKAE 271
FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ G KV + R + + +
Sbjct: 178 AFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV-FVGRFKNRKD 235
Query: 272 REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG 331
RE LR + E +NVY+KN D+ DE LK FS+ G S KVM D G
Sbjct: 236 REAELRSKASEF----------TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 285
Query: 332 INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 286 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 166/362 (45%), Positives = 245/362 (67%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 130 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 189 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI +G +Y+KN+DD + DE+
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A+KA+ +G +L KPL +A+A
Sbjct: 309 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Query: 370 QR 371
QR
Sbjct: 368 QR 369
Score = 383 (139.9 bits), Expect = 3.4e-35, P = 3.4e-35
Identities = 102/294 (34%), Positives = 153/294 (52%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
A A++ +N + K I + + D L N+F+KNLD + + L E FS
Sbjct: 64 AQKALDTMNFDIIKGKSIRL--MWSQRDAYLRRSGIG--NVFIKNLDKSIDNKTLYEHFS 119
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVI-GSKVLYAARAQKKAE 271
FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ G KV + R + + +
Sbjct: 120 AFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV-FVGRFKNRKD 177
Query: 272 REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG 331
RE LR + E +NVY+KN D+ DE LK FS+ G S KVM D G
Sbjct: 178 REAELRSKASEF----------TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 227
Query: 332 INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 228 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 281
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 167/347 (48%), Positives = 234/347 (67%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+R+C+D T S+ Y YVNF
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS RDP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SC V E+G SKG+GFV FET E+A AI+ +NG + ++++VG+F + +R
Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEAS 348
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 347
Score = 389 (142.0 bits), Expect = 6.9e-36, P = 6.9e-36
Identities = 95/296 (32%), Positives = 154/296 (52%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A+L+V +L + L E F G I+S ++ S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
+ A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFVKNLDKSINNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
S FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ + + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREA----ELGARAKEF------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ + Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
Identities = 183/421 (43%), Positives = 265/421 (62%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL PDVT+ +L D FS + SV +C++S TG+S CY Y+NF SP A A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 73 KNHTQLHGKMLRISWSCRDPDARK---SGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
NH+ L GK +RI WS RD R+ +G ANL+VKNL SI + L+ MF FG+I+SC
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
KV E+G+SKG GFVQF+TE+SA +A L+G+ V K+++V +FI K +R +
Sbjct: 142 KVV-EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQD 200
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
TN+++KNL VT++ L FS++G ++S+++ RD G SRGFGFVNF NP++A++A+E
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
++ G +GSK L+ +A KK ER ++L+ +F + + + SN+YVKN+ + + +
Sbjct: 261 SLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKP-NMRWSNLYVKNLSESMNETR 319
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F G I SAKVM E G +KGFGFVCFS+ EE+ +A +G+++ KP+ V +A
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
+RKEDR LQ QY Q + + A PS P L Y + Q P + G Y +
Sbjct: 380 ERKEDRIKRLQ-QYFQAQPR-QYTQAPSAPSPAQPVLSYVSSSYGCFQ-PFQVGTSYYYM 436
Query: 429 G 429
G
Sbjct: 437 G 437
Score = 381 (139.2 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 93/295 (31%), Positives = 163/295 (55%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T T A+LYV +L +T L F F S+ S +V +++ G+S +G+V F + A
Sbjct: 107 TRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSA 164
Query: 67 IRAIEVKNHTQLHGKMLRIS-WSCRDPDARKSG---VANLFVKNLIESIDNVRLQEMFQN 122
+ A + + ++GK L ++ + +D A +G N++VKNLIE++ + L +F
Sbjct: 165 VSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQ 224
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK---- 178
+G + S V G+S+G GFV F E+A A+E+L G +G K+++VG+ +KK
Sbjct: 225 YGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERR 284
Query: 179 -------SDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSR 231
SD + P +++NL++KNL + E L E F +G+I S + ENG S+
Sbjct: 285 EMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSK 344
Query: 232 GFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKE 286
GFGFV F N +++++A +NG ++ K + A++K +R + L+ F+ + ++
Sbjct: 345 GFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQ 399
Score = 240 (89.5 bits), Expect = 4.4e-17, P = 4.4e-17
Identities = 61/192 (31%), Positives = 104/192 (54%)
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDAR 245
++++ +L++ +L DVTE+ L++KFS + S+ + R+ G S + ++NFD+P A
Sbjct: 17 SSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSAS 76
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
A+ +N S + K + +Q+ + R F +N+YVKN+D +
Sbjct: 77 NAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGF-------------ANLYVKNLDSSI 123
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
T L+ F G+I S KV+ +E G +KGFGFV F + + A A + HG M++ K L+
Sbjct: 124 TSSCLERMFCPFGSILSCKVV-EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLF 182
Query: 366 VAIAQRKEDRQA 377
VA K++R A
Sbjct: 183 VAKFINKDERAA 194
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 163/362 (45%), Positives = 235/362 (64%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF F+ + S+R+C+D + RS YGYVNFL DA +A+E
Sbjct: 10 ASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALE 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 70 TMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
T E+G SKG+GFV ++ + +A+ AIE +NG + D ++V RF + DR L A+
Sbjct: 130 MTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELREKPAE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L FSK+G+ S+ + +D +G S+ FGFV+FD+ A+ A+E
Sbjct: 189 FTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I + ++ RAQKK ER+ L+ FE+ +KERI + + +Y+KN+DD + DE
Sbjct: 249 DMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDET 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I KVM+ E G +KGFG +CF SPE A+KA+ +G +L KPL +A+
Sbjct: 309 LRKEFSVFGSICRVKVMQ-EAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALG 367
Query: 370 QR 371
Q+
Sbjct: 368 QK 369
Score = 395 (144.1 bits), Expect = 1.4e-36, P = 1.4e-36
Identities = 102/291 (35%), Positives = 154/291 (52%)
Query: 96 KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESAN 154
K A+L+V +L E + L F G ++S ++ +S G+G+V F A
Sbjct: 6 KYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQ 65
Query: 155 AAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKF 214
A+E +N + K I + + D L N+F+KNLD + + L E FS F
Sbjct: 66 KALETMNFDLIKGKSIRL--MWSQRDACLRKSGIG--NVFIKNLDKSIDNKTLYEHFSPF 121
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
GKI S + DE G S+G+GFV++ + A RA+E MNG ++ L+ AR + + +RE
Sbjct: 122 GKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREA 180
Query: 275 ILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK 334
LR EK E +NVY+KN DD+ DE L++ FS+ G S KVM+D G +K
Sbjct: 181 ELR----EKPAEF------TNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSK 230
Query: 335 GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FGFV F S + A AV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 231 RFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQ 281
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 155/318 (48%), Positives = 220/318 (69%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMR 327
L+ FS G ITSAK R
Sbjct: 310 LRKEFSPYGVITSAKKRR 327
Score = 367 (134.2 bits), Expect = 2.3e-33, P = 2.3e-33
Identities = 96/296 (32%), Positives = 160/296 (54%)
Query: 93 DARKSG--VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFET 149
+A SG +A+L+V +L + L E F G I+S +V +S G+ ++ F+
Sbjct: 2 NASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + I + + ++ + S N+F+KNL+ + + L +
Sbjct: 62 PADAERALDTMNFEMLKGQPIRI-MWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S +A DE+G SRGFGFV+F+ + A++A+ MNG ++ + ++ + +
Sbjct: 118 TFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L R L++ +N+YVKN+ DV ++ L+ FSQ G + S KVMRD
Sbjct: 177 REREAELG--------ARALEF--TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++ FGFV F EEA KAV +G + + LY AQ++ +RQ L+ ++ Q
Sbjct: 227 SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 162/328 (49%), Positives = 217/328 (66%)
Query: 5 PPTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
P T + P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+
Sbjct: 33 PATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYND 92
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
RA++ N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F
Sbjct: 93 TAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAA 152
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 153 FGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 212
Query: 183 --LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
A +TN+++KN+D +V +E + F KFG+I S ++RD G SRGFGFVNF
Sbjct: 213 SKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFST 272
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+ A+ A+E MN + S+ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN
Sbjct: 273 HESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKN 332
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD 328
+ DDV D++L+ F GTITSAKVMRD
Sbjct: 333 LTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 401 (146.2 bits), Expect = 4.8e-35, P = 4.8e-35
Identities = 98/288 (34%), Positives = 156/288 (54%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158
A+L+V L S+ L E+F + G + S +V +S G+ +V + A++
Sbjct: 42 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALD 101
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKFG 215
LN T + K I S R PA + T N+F+KNLDS + + L + F+ FG
Sbjct: 102 ELNYTLIKGKPCR----IMWSQR---DPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 154
Query: 216 KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI 275
I S +A+DE G S+G+GFV+++ + A A++ +NG ++ K ++ K +R+
Sbjct: 155 NILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS- 213
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG 335
+FEE +K +N+Y+KNID +V DEE + F + G ITSA + RD +G ++G
Sbjct: 214 ---KFEE------MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG 264
Query: 336 FGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
FGFV FS+ E A AV + + + LYV AQ+K +R+ L+ QY
Sbjct: 265 FGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
Score = 250 (93.1 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 106/383 (27%), Positives = 158/383 (41%)
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
D DD R L G++ +KV+ + A E + E KE +G
Sbjct: 336 DVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETK---ESANKENEKAAEGE---- 388
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM 358
K + ++E K Q K + G +KGFGFVCFSSP+EASKAV + M
Sbjct: 389 KEPAAEEKEKEEKKEAEQ-------KPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRM 441
Query: 359 LHRKPLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTP---- 410
++ KPLYVA+AQRK+ R++ L+ +Q ++ + ++A + Y P+++Y
Sbjct: 442 VNGKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAVFYGPGQQGF 501
Query: 411 -PGIV--SQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSP-LPVNPKHXXXXXXXX 466
PG PP+PG+M G R G F P + V P + P
Sbjct: 502 IPGAQRGGMFPPQPGMMMGMPG-RPGQYPGPF-PGQQGGRGVGPNQQIPPNFQGLPMGAM 559
Query: 467 XXXXLPQVGAHYMXXXXXXXXXXXXXXXXXXGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
+P G Y GG + G + G + G G
Sbjct: 560 QGPGIPN-GMGYPMVQGQFGGGRGRGQVPGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRG 618
Query: 527 GVMARK-PDMLNGMLAAPS-----PEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXX 580
+ + P+ G+L A + P+QQKQ+LGE LYP ++ +P+L KITGM
Sbjct: 619 QAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDN 678
Query: 581 XXXXXXXXXXXXXAVKVEEAVQV 603
KV+EA+ V
Sbjct: 679 TELLGLLEDDEALRAKVDEALSV 701
Score = 115 (45.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 228 GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKER 287
G S+GFGFV F +PD+A +A+ MN ++ K LY A AQ+K R L + + R
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIR 473
Score = 60 (26.2 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDS 47
+LYV +L DV D +L + F + ++ S +V +D+
Sbjct: 327 NLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDT 361
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 160/364 (43%), Positives = 228/364 (62%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LYVGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAA 188
++G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRA 196
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
+TN+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+
Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV 256
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
++G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE
Sbjct: 257 LDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDE 316
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+LK FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V +
Sbjct: 317 KLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
Query: 369 AQRK 372
Q +
Sbjct: 376 GQAR 379
Score = 352 (129.0 bits), Expect = 5.8e-34, Sum P(2) = 5.8e-34
Identities = 95/285 (33%), Positives = 147/285 (51%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSK-GHGFVQFETEESANAAIE 158
A L+V +L + L + F+ G + ++ +S G+G+V F A A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
+N + K + + + DR+ S N+F+KNLD + L FS FG I
Sbjct: 78 TMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDKSIDNRALFYLFSAFGNIL 133
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S + D+NG S+G+ +V+FD+ A RA+ MNG + ++ +Y R + ER
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA---- 188
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
E + ++R +NV+VKNI DD+ DE+LK F + G S KV+RD G +KGFGF
Sbjct: 189 --EVRTRDRATF---TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
V + + E A KAV HG + K LYV AQ+K +R A L+ ++
Sbjct: 244 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Score = 42 (19.8 bits), Expect = 5.8e-34, Sum P(2) = 5.8e-34
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 511 ELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSP 545
E+ +G G + F+S + D +NG + P
Sbjct: 336 EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 160/364 (43%), Positives = 227/364 (62%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LYVGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAA 188
++G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRA 196
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
+TN+F+KN +D+ +E L E FS +G S+ + RD +G S+GFGFV ++ + A++A+
Sbjct: 197 TFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV 256
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
++G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE
Sbjct: 257 LDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDE 316
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+LK FS G+I+ AKVM E G KGFG VCFSS E+A+KAV+ +G + KPL+V +
Sbjct: 317 KLKEEFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTL 375
Query: 369 AQRK 372
Q +
Sbjct: 376 GQAR 379
Score = 344 (126.2 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 94/285 (32%), Positives = 147/285 (51%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSK-GHGFVQFETEESANAAIE 158
A L+V +L + L + F+ G + ++ +S G+G+V F A A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
+N + K + + + DR+ S N+F+KNLD + L FS FG I
Sbjct: 78 TMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDKSIDNRALFYLFSAFGNIL 133
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S + D+NG S+G+ +V+FD+ A RA+ MNG + ++ +Y R + ER
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA---- 188
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
E + ++R +NV+VKN +D+ DE+LK FS G S KV+RD G +KGFGF
Sbjct: 189 --EVRTRDRATF---TNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGF 243
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
V + + E A KAV HG ++ K LYV AQ+K +R A L+ ++
Sbjct: 244 VRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRF 288
Score = 38 (18.4 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 511 ELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSP 545
E+ +G G + F+S + D +NG P
Sbjct: 336 EVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKP 370
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 157/364 (43%), Positives = 227/364 (62%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LYVGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++GK R+ WS D RKSG+ N+F+KNL +SIDN L +F FG+I+SCKV
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAA 188
++G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKA 196
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
+TN+F+KN D+ ++ L E FS++G S+ + RD +G S+GFGFV ++ + A++A+
Sbjct: 197 TFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAV 256
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
++G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE
Sbjct: 257 LDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDE 316
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+LK FS G+I+ AKVM E G KGFG +CFSS EEA+KAV+ +G ++ KPL V +
Sbjct: 317 KLKEEFSSFGSISRAKVMV-EVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTL 375
Query: 369 AQRK 372
Q +
Sbjct: 376 GQAR 379
Score = 347 (127.2 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
Identities = 94/285 (32%), Positives = 147/285 (51%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSK-GHGFVQFETEESANAAIE 158
A L+V +L + L + F+ G + ++ +S G+G+V F A A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
+N + K + + + DR+ S N+F+KNLD + L FS FG I
Sbjct: 78 TMNFDLINGKPFRL-MWSQPDDRLRKSGIG---NIFIKNLDKSIDNRALFYLFSAFGSIL 133
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S + D+NG S+G+ +V+FD+ A RA+ MNG + ++ +Y R + ER
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA---- 188
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
E + ++ K +NV+VKN DD+ D++LK FS+ G S KV+RD G +KGFGF
Sbjct: 189 --EVRTRD---KATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGF 243
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
V + + E A KAV HG + K LYV AQ+K +R A L+ ++
Sbjct: 244 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Score = 188 (71.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 55/181 (30%), Positives = 97/181 (53%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T +++V + D+ D +L + FSE+ SV+V +DS+ G+S +G+V + H+A +
Sbjct: 197 TFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSS-GKSKGFGFVRY-ETHEAAQK 254
Query: 70 IEVKNHTQ-LHGKMLRISWSCRDPD-----------------ARKSGVANLFVKNLIESI 111
+ H + + GK+L + + + + +R GV +++KNL E+I
Sbjct: 255 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETI 313
Query: 112 DNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIY 171
D+ +L+E F +FG+I KV E G+ KG G + F + E A A++ +NG VG K +
Sbjct: 314 DDEKLKEEFSSFGSISRAKVMV-EVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQ 372
Query: 172 V 172
V
Sbjct: 373 V 373
Score = 43 (20.2 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 511 ELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQ 547
E+ +G G + F+S + D +NG + P Q
Sbjct: 336 EVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQ 372
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 159/364 (43%), Positives = 225/364 (61%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LYVGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAA 188
++G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRA 196
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
+TN+F+KN D+ +E L + FS++G S+ + RD G S+GFGFV ++ + A++A+
Sbjct: 197 TFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAV 256
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
++G I KVL RAQKK ER LR +FE + + + G +Y+KN+D+ + DE
Sbjct: 257 LELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDE 316
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+LK FS G+I+ AKVM E G KGFG VCFSS EEASKAVN +G ++ K L+V +
Sbjct: 317 KLKEEFSLFGSISRAKVMM-EVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTL 375
Query: 369 AQRK 372
Q +
Sbjct: 376 GQAR 379
Score = 338 (124.0 bits), Expect = 4.1e-30, P = 4.1e-30
Identities = 93/285 (32%), Positives = 145/285 (50%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSK-GHGFVQFETEESANAAIE 158
A L+V +L + L + F+ G + ++ +S G+G+V F A A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
+N + K + + + D + S N+F+KNLD + L FS FG I
Sbjct: 78 TMNFDLINGKPFRL-MWSQPDDHLRKSGVG---NIFIKNLDKSIDNRALFYLFSAFGNIL 133
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S + D+NG S+G+ +V+FD+ A RA+ MNG + ++ +Y R + ER
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA---- 188
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
E + ++R +NV+VKN DD+ DE+LK FS+ G S KV+RD G +KGFGF
Sbjct: 189 --EVRTRDRATF---TNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGF 243
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
V + + E A KAV HG + K L V AQ+K +R A L+ ++
Sbjct: 244 VRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRF 288
Score = 182 (69.1 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 55/181 (30%), Positives = 96/181 (53%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T +++V + D+ D +L FSE+ SV+V +D+T G+S +G+V + H+A +
Sbjct: 197 TFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDAT-GKSKGFGFVRY-ETHEAAQK 254
Query: 70 IEVKNHTQ-LHGKMLRISWSCRDPD-----------------ARKSGVANLFVKNLIESI 111
++ H + + GK+L + + + + R GV +++KNL E+I
Sbjct: 255 AVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVP-IYIKNLDETI 313
Query: 112 DNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIY 171
++ +L+E F FG+I KV E G+ KG G V F + E A+ A+ +NG VG K ++
Sbjct: 314 NDEKLKEEFSLFGSISRAKVMM-EVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLH 372
Query: 172 V 172
V
Sbjct: 373 V 373
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 595 (214.5 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 132/298 (44%), Positives = 183/298 (61%)
Query: 171 YVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG 228
+VGRF + +R L + A ++TN+++KN D+ +E L E F KFG S+ + DE+G
Sbjct: 1 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 60
Query: 229 TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
S+GFGFV+F+ +DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI
Sbjct: 61 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 120
Query: 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEAS 348
+Y+G N+YVKN+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+
Sbjct: 121 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 179
Query: 349 KAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYT 408
KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA S +P+ + Y
Sbjct: 180 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMA-----SVRAVPNPVINPYQP 234
Query: 409 TPPG--IVSQVPPRPG-LMYQPLG-----LRTG--WRANGFVPPTRPAFQVSPLPVNP 456
PP ++ +P Y P R W A G P P FQ P + P
Sbjct: 235 APPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTAQGARP--HP-FQNMPGAIRP 289
Score = 383 (139.9 bits), Expect = 4.0e-49, Sum P(2) = 4.0e-49
Identities = 83/202 (41%), Positives = 121/202 (59%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153
AR N+++KN E +D+ RL+E+F FG +S KV T E GKSKG GFV FE E A
Sbjct: 17 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 76
Query: 154 NAAIENLNGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSD 201
A++ +NG + K+IYVGR KK +R + +Y NL++KNLD
Sbjct: 77 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 136
Query: 202 VTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+ +E L ++FS FG I S + E G S+GFGFV F +P++A +A+ MNG ++ +K L
Sbjct: 137 IDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 195
Query: 262 YAARAQKKAEREQILRHQFEEK 283
Y A AQ+K ER+ L +Q+ ++
Sbjct: 196 YVALAQRKEERQAHLTNQYMQR 217
Score = 228 (85.3 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
Identities = 66/204 (32%), Positives = 104/204 (50%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L + F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 82
Query: 73 KNHTQLHGKMLRISWSCRDPDA-----RKSGV-----------ANLFVKNLIESIDNVRL 116
N +L+GK + + + + + RK NL+VKNL + ID+ RL
Sbjct: 83 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 142
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 143 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 201
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 202 RKEER-----QAHLTNQYMQRMAS 220
Score = 151 (58.2 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 372 VQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHML 430
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAIH 618
KV+EAV VL+ +AK + Q+A++
Sbjct: 431 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 461
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 669 (240.6 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 160/419 (38%), Positives = 240/419 (57%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEF--KSLASVRVCKDSTTGRSTCYGYVN 59
A PP T SLYVGDL DV + L + FS+ ++AS+ VC+DS T RS Y YVN
Sbjct: 176 AYQPPHQLT--SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVN 233
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
F + HDA RA++ N+T +HGK RI WS RDP RK+ V N+FVKNL + +DN L +
Sbjct: 234 FFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDT 293
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F +FGNI+SCKV E G SKG+G+V FET +SA AIE +NGT + K I V RF+ K
Sbjct: 294 FSSFGNILSCKVEF-EKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKV 352
Query: 180 DRVLPSPAAKYTN-LFMKNLDSDVTEEHLVEKFS-KFGKIASLLIARDENGTSRGFGFVN 237
+R K N +F +N D +T E L ++ S +FG+I S ++ D NG S+G G V
Sbjct: 353 ERY------KVENKVFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVE 406
Query: 238 FDNPDDARRALEAMNGSVI----GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
F N +DA++ L +I G+ + + + + I + + K ER +Y+
Sbjct: 407 FKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSK-VERFTEYRK 465
Query: 294 S----NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASK 349
++++ NID+ + + +K F++ GTI K+++DE NKGFGF+ FS +EA K
Sbjct: 466 KTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQK 525
Query: 350 AVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYT 408
A+++ +G+ K + V+ + K++ Q + +L + I + N+I G + YT
Sbjct: 526 ALDSLNGFTFGSKQIQVSFSN-KDNNQINNKLN--GNSTKI---TKNIIQGGASASQYT 578
Score = 45 (20.9 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 498 GGQSKYVPNGRIRELNKGSGVSLGTFN-----------SGGVMARKPDMLNGMLAAPSPE 546
G ++K VPNG+ R N + + N S K + + + E
Sbjct: 687 GFRNKRVPNGKPRYNNNNNSSNNNNNNNTTTNVTTTPSSTETTTPKTTITLEFITNATAE 746
Query: 547 QQKQILGERLYPLV-EKHKP--DLVAKITGM 574
+ + LG +Y LV K+ +L AKI GM
Sbjct: 747 EATETLGSEVYNLVLAKYNNNIELAAKIAGM 777
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 163/390 (41%), Positives = 227/390 (58%)
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
+EV N+ +L GK +RI +S RDP R SG N+FVKNL ESIDN +L +MF FG ++SC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
KVA G SKG+GFVQF ++ S A NGT + ++ I+V F+ + +
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQW---DKSRV 117
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL T+ L F +FG+I S ++ +D G SR FGFVNF+ + A A+E
Sbjct: 118 FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKY-KGSNVYVKNIDDDVTDE 308
MNG V+ K L+ RAQ+K R + L+ +FE ++ R +K KG N+YVKN+DD V +
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+L+ FS+ GTITS KVM GI+KG GFV FS+ EEASKA+ +G M+ KP+YV++
Sbjct: 238 KLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSL 297
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG-IVSQVPPRPGLMYQP 427
AQ KE + HLQ Q+ ++ P P P ++SQ P G +QP
Sbjct: 298 AQCKEQHKLHLQTQF---------NNPPPSPHQQPIFSQVVAPATMLSQQTPLRGYNFQP 348
Query: 428 LGLRTGWRANGFVPPTR-PAFQVSPLPVNP 456
+ G R PP P F V P P P
Sbjct: 349 YSM-CGSRMPNSCPPISIPNFMV-PQPFRP 376
Score = 389 (142.0 bits), Expect = 6.9e-36, P = 6.9e-36
Identities = 96/282 (34%), Positives = 148/282 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+++V +L + + +L D FS F + S +V +D++ G S YG+V F S A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDAS-GVSKGYGFVQFYSDLSVYTACNF 90
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGV-ANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T + + + + KS V N++VKNL+E+ + L+ +F FG I S V
Sbjct: 91 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---------- 181
+GKS+ GFV FE E+A AIE +NG V +K ++VGR +K++R
Sbjct: 151 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFEL 210
Query: 182 ---VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
+ K NL++KNLD V L E FS+FG I S + NG S+G GFV F
Sbjct: 211 EKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEF 270
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
++A +A+ MNG ++G+K +Y + AQ K + + L+ QF
Sbjct: 271 STSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQF 312
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 136/283 (48%), Positives = 193/283 (68%)
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAA 188
V E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A
Sbjct: 2 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 60
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
++TN+++KN D+ +E L + F G S+ + DE+G S+GFGFV+F+ +DA++A+
Sbjct: 61 EFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 117
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 118 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 177
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 178 RLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 236
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPP 411
AQRKE+RQAHL QY Q MA S +P+ + Y PP
Sbjct: 237 AQRKEERQAHLTNQYMQRMA-----SVRAVPNPVINPYQPAPP 274
Score = 388 (141.6 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 98/259 (37%), Positives = 148/259 (57%)
Query: 43 VCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI----SWSCRDPD--ARK 96
VC ++ G S YG+V+F + A RAIE N L+ + + + S R+ + AR
Sbjct: 3 VCDEN--G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 59
Query: 97 SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAA 156
N+++KN E +D+ RL+++F G +S KV T E GKSKG GFV FE E A A
Sbjct: 60 KEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 116
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSDVTE 204
++ +NG + K+IYVGR KK +R + +Y NL++KNLD + +
Sbjct: 117 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDD 176
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
E L ++FS FG I S + E G S+GFGFV F +P++A +A+ MNG ++ +K LY A
Sbjct: 177 ERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 235
Query: 265 RAQKKAEREQILRHQFEEK 283
AQ+K ER+ L +Q+ ++
Sbjct: 236 LAQRKEERQAHLTNQYMQR 254
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 118/243 (48%), Positives = 166/243 (68%)
Query: 171 YVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG 228
+VGRF + +R L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G
Sbjct: 2 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 61
Query: 229 TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
S+GFGFV+F+ +DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI
Sbjct: 62 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 121
Query: 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEAS 348
+Y+G N+YVKN+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+
Sbjct: 122 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 180
Query: 349 KAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYT 408
KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA S +P+ + Y
Sbjct: 181 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMA-----SVRAVPNPVINPYQP 235
Query: 409 TPP 411
PP
Sbjct: 236 APP 238
Score = 380 (138.8 bits), Expect = 7.6e-35, P = 7.6e-35
Identities = 82/202 (40%), Positives = 121/202 (59%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153
AR N+++KN E +D+ RL+++F FG +S KV T E GKSKG GFV FE E A
Sbjct: 18 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 77
Query: 154 NAAIENLNGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSD 201
A++ +NG + K+IYVGR KK +R + +Y NL++KNLD
Sbjct: 78 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 137
Query: 202 VTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+ +E L ++FS FG I S + E G S+GFGFV F +P++A +A+ MNG ++ +K L
Sbjct: 138 IDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 196
Query: 262 YAARAQKKAEREQILRHQFEEK 283
Y A AQ+K ER+ L +Q+ ++
Sbjct: 197 YVALAQRKEERQAHLTNQYMQR 218
Score = 232 (86.7 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 67/204 (32%), Positives = 104/204 (50%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 83
Query: 73 KNHTQLHGKMLRISWSCRDPDA-----RKSGV-----------ANLFVKNLIESIDNVRL 116
N +L+GK + + + + + RK NL+VKNL + ID+ RL
Sbjct: 84 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 143
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 144 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 202
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 203 RKEER-----QAHLTNQYMQRMAS 221
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 115/252 (45%), Positives = 166/252 (65%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+R+C+D T S+ Y YVNF
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS RDP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SC V E+G SKG+GFV FET E+A AI+ +NG + ++++VG+F + +R
Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNG 253
+DA++A++ MNG
Sbjct: 242 EDAQKAVDEMNG 253
Score = 341 (125.1 bits), Expect = 1.9e-30, P = 1.9e-30
Identities = 84/267 (31%), Positives = 137/267 (51%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A+L+V +L + L E F G I+S ++ S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
+ A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFVKNLDKSINNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
S FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ + + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + KE NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREA----ELGARAKEF------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHG 356
G +KGFGFV F E+A KAV+ +G
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 182 (69.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 60/197 (30%), Positives = 100/197 (50%)
Query: 184 PS-PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
PS P+ +L++ +L DVTE L EKFS G I S+ I RD TS + + N
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLI-TSGSSNYA-YVNFQ 60
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+ A A++ + V+ K + +I+ Q R + K N++VKN+D
Sbjct: 61 HTKDAEHALD--TMNFDVI-------KGKPVRIMWSQ----RDPSLRKSGVGNIFVKNLD 107
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ ++ L S G I S V+ DE G +KG+GFV F + E A +A+ +G +L+ +
Sbjct: 108 KSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 363 PLYVAIAQRKEDRQAHL 379
++V + +++R+A L
Sbjct: 167 KVFVGQFKSRKEREAEL 183
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 429 (156.1 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 91/184 (49%), Positives = 126/184 (68%)
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+E MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD +
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE+L+ FS G+ITSAKVM ++ G +KGFGFVCFSSPEEA+KAV +G ++ KPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLY-YTTPPGIVSQVPPRPGL 423
VA+AQRKE+R+AHL QY Q +AG+ AN I + + P+ Y P V Q RP
Sbjct: 120 VALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA--VPQAQGRPPY 177
Query: 424 MYQP 427
Y P
Sbjct: 178 -YTP 180
Score = 241 (89.9 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
Identities = 55/140 (39%), Positives = 85/140 (60%)
Query: 156 AIENLNGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSDVT 203
A+E +NG + K I+VGR KK +R + ++Y NL++KNLD +
Sbjct: 2 AVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 61
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYA 263
+E L ++FS FG I S + E+G S+GFGFV F +P++A +A+ MNG ++GSK LY
Sbjct: 62 DEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 120
Query: 264 ARAQKKAEREQILRHQFEEK 283
A AQ+K ER+ L +Q+ ++
Sbjct: 121 ALAQRKEERKAHLTNQYMQR 140
Score = 187 (70.9 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153
+R GV NL++KNL ++ID+ +L++ F FG+I S KV EDG+SKG GFV F + E A
Sbjct: 44 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 101
Query: 154 NAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNL 198
A+ +NG VG K +YV +K +R A TN +M+ +
Sbjct: 102 TKAVTEMNGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRV 141
Score = 133 (51.9 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXX 587
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGM
Sbjct: 319 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 377
Query: 588 XXXXXXAVKVEEAVQVLKLSEAKVSTQEAI 617
KV+EAV VL+ AK + +
Sbjct: 378 ESPESLRSKVDEAVAVLQAHHAKKEAAQKV 407
Score = 107 (42.7 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 28/95 (29%), Positives = 52/95 (54%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LY+ +L + D +L FS F S+ S +V + GRS +G+V F SP +A +A+
Sbjct: 50 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 107
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL 107
N + K L ++ + R + RK+ + N +++ +
Sbjct: 108 MNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRV 141
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 93/196 (47%), Positives = 126/196 (64%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA--AK 189
A E G KG+GFV F+ +ESA AI+ LNG + ++I+VGRF +R A +
Sbjct: 122 ACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ K+ D D +E
Sbjct: 181 STSADFKDFDDDSDDE 196
Score = 202 (76.2 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 49/175 (28%), Positives = 89/175 (50%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158
A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+E
Sbjct: 2 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALE 61
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
+N + + + + + ++ + S N+F+KNL + + L FS FG I
Sbjct: 62 TMNFDVINGRPVRI-MWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++A+NG + + ++ R + ERE
Sbjct: 118 SCKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKERE 171
Score = 173 (66.0 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 56/186 (30%), Positives = 91/186 (48%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
+L++ +L +VTE L EKFS G I S+ + RD+ T R G+ + N A A+
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKV-TRRSLGYA-YVNYQQPVDAKRAL 60
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ V+ +I+ Q R + K NV++KN+ + ++ L
Sbjct: 61 E--TMNFDVI-------NGRPVRIMWSQ----RDPSLRKSGVGNVFIKNLGKTIDNKALY 107
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V +
Sbjct: 108 NIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKS 166
Query: 372 KEDRQA 377
++R+A
Sbjct: 167 HKEREA 172
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 92/196 (46%), Positives = 126/196 (64%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA--AK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R A +
Sbjct: 122 ACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 210 (79.0 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 51/176 (28%), Positives = 90/176 (51%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + + + ++ + S N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVRI-MWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 171
Score = 180 (68.4 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 58/186 (31%), Positives = 92/186 (49%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
+L++ +L +VTE L EKFS G I S+ I RD+ T R G+ + N A A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKI-TRRSLGYA-YVNYQQPVDAKRAL 60
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ V+ K +I+ Q R + K NV++KN+ + ++ L
Sbjct: 61 E--TLNFDVI-------KGRPVRIMWSQ----RDPSLRKSGVGNVFIKNLGKTIDNKALY 107
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V +
Sbjct: 108 NIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKS 166
Query: 372 KEDRQA 377
++R+A
Sbjct: 167 HKEREA 172
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 92/196 (46%), Positives = 126/196 (64%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA--AK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R A +
Sbjct: 122 ACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 210 (79.0 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 51/176 (28%), Positives = 90/176 (51%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + + + ++ + S N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVRI-MWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 171
Score = 180 (68.4 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 58/186 (31%), Positives = 92/186 (49%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
+L++ +L +VTE L EKFS G I S+ I RD+ T R G+ + N A A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKI-TRRSLGYA-YVNYQQPVDAKRAL 60
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ V+ K +I+ Q R + K NV++KN+ + ++ L
Sbjct: 61 E--TLNFDVI-------KGRPVRIMWSQ----RDPSLRKSGVGNVFIKNLGKTIDNKALY 107
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V +
Sbjct: 108 NIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKS 166
Query: 372 KEDRQA 377
++R+A
Sbjct: 167 HKEREA 172
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 92/196 (46%), Positives = 126/196 (64%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA--AK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R A +
Sbjct: 122 ACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 206 (77.6 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 50/176 (28%), Positives = 89/176 (50%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + + + ++ + S N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVRI-MWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++ MNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE 171
Score = 180 (68.4 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 58/186 (31%), Positives = 92/186 (49%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
+L++ +L +VTE L EKFS G I S+ I RD+ T R G+ + N A A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKI-TRRSLGYA-YVNYQQPVDAKRAL 60
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ V+ K +I+ Q R + K NV++KN+ + ++ L
Sbjct: 61 E--TLNFDVI-------KGRPVRIMWSQ----RDPSLRKSGVGNVFIKNLGKTIDNKALY 107
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V +
Sbjct: 108 NIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKS 166
Query: 372 KEDRQA 377
++R+A
Sbjct: 167 HKEREA 172
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 92/196 (46%), Positives = 126/196 (64%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA--AK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R A +
Sbjct: 122 ACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 208 (78.3 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 51/176 (28%), Positives = 90/176 (51%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + + + ++ + S N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVRI-MWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 171
Score = 178 (67.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 57/186 (30%), Positives = 92/186 (49%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
+L++ +L +VTE L EKFS G I S+ + RD+ T R G+ + N A A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKI-TRRSLGYA-YVNYQQPVDAKRAL 60
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ V+ K +I+ Q R + K NV++KN+ + ++ L
Sbjct: 61 E--TLNFDVI-------KGRPVRIMWSQ----RDPSLRKSGVGNVFIKNLGKTIDNKALY 107
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V +
Sbjct: 108 NIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKS 166
Query: 372 KEDRQA 377
++R+A
Sbjct: 167 HKEREA 172
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 91/216 (42%), Positives = 137/216 (63%)
Query: 160 LNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGK 216
+NG + ++++YVGRF +R V A +TN+F+KN+ D+ +E L E F ++G
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 60
Query: 217 IASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQIL 276
S+ + RD +G S+GFGFV ++ + A++A+ ++G I KVLY RAQKK ER L
Sbjct: 61 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 120
Query: 277 RHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF 336
R +FE R + + G +Y+KN+D+ + DE+LK FS G+I+ AKVM E G KGF
Sbjct: 121 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGF 179
Query: 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
G VCFSS EEA+KAV+ +G ++ KPL+V + Q +
Sbjct: 180 GVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 215
Score = 293 (108.2 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 68/182 (37%), Positives = 106/182 (58%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
N+FVKN+ + ID+ +L+E+F +G S KV GKSKG GFV++ET E+A A+ +L
Sbjct: 36 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNL-------------FMKNLDSDVTEEHL 207
+G ++ K +YVGR KK +R L ++ L ++KNLD + +E L
Sbjct: 96 HGKSIDGKVLYVGRAQKKIER-LAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKL 154
Query: 208 VEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267
E+FS FG I+ + E G +GFG V F + ++A +A++ MNG ++GSK L+ Q
Sbjct: 155 KEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 213
Query: 268 KK 269
+
Sbjct: 214 AR 215
Score = 208 (78.3 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 52/133 (39%), Positives = 75/133 (56%)
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
MNG + ++ +Y R + ER E + ++R +NV+VKNI DD+ DE+L
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAA------EVRTRDRATF---TNVFVKNIGDDIDDEKL 51
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
K F + G S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ
Sbjct: 52 KELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 111
Query: 371 RKEDRQAHLQLQY 383
+K +R A L+ ++
Sbjct: 112 KKIERLAELRRRF 124
Score = 175 (66.7 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 52/180 (28%), Positives = 96/180 (53%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T +++V ++ D+ D +L + F E+ SV+V +D++ G+S +G+V + H+A +
Sbjct: 33 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-GKSKGFGFVRY-ETHEAAQK 90
Query: 70 IEVKNHTQ-LHGKMLRISWSCRDPDA--------------RKSGVAN--LFVKNLIESID 112
+ H + + GK+L + + + + KS +++KNL E+I+
Sbjct: 91 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIN 150
Query: 113 NVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV 172
+ +L+E F +FG+I KV E G+ KG G V F + E A A++ +NG VG K ++V
Sbjct: 151 DEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 209
Score = 42 (19.8 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 511 ELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSP 545
E+ +G G + F+S + D +NG + P
Sbjct: 172 EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 206
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 331 (121.6 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 84/202 (41%), Positives = 114/202 (56%)
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
QKK E + L+H+FE+ ++++I +Y+G N+YVKN+DD + DE L+ FS GTITSAKVM
Sbjct: 1 QKKVEWQTELKHKFEQMKQDKITRYQGVNLYVKNLDDSI-DERLRKQFSPFGTITSAKVM 59
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQH 386
E G +K FGF+CFSS EEA KAV +G ++ KPLYVA+AQ KE+ Q HL QY
Sbjct: 60 M-EGGHSKRFGFICFSSHEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHLTNQYMHR 118
Query: 387 MAGIEGSSANVI-------PSGY--PSLYYTT------PPGIVSQVPPRPGLMYQPLGLR 431
MA + VI PSGY ++ T PP ++Q+ P P + Q
Sbjct: 119 MASVRTVPNPVINPYQPAPPSGYFMAAIPQTQNHAAYYPPSQIAQLRPSPCWIAQGARPH 178
Query: 432 TGWRANGFVPPTRPAFQVSPLP 453
G + P P S +P
Sbjct: 179 PFQNMPGAICPAAPRPPFSMVP 200
Score = 165 (63.1 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 36/89 (40%), Positives = 56/89 (62%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KNLD + +E L ++FS FG I S + E G S+ FGF+ F + ++A +A+ M
Sbjct: 29 NLYVKNLDDSI-DERLRKQFSPFGTITSAKVMM-EGGHSKRFGFICFSSHEEAFKAVMEM 86
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQF 280
NG ++ +K LY A AQ K E + L +Q+
Sbjct: 87 NGKIVATKPLYVALAQHKEECQTHLTNQY 115
Score = 151 (58.2 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 42/102 (41%), Positives = 57/102 (55%)
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
+V+ T+L K ++ +D R GV NL+VKNL +SID RL++ F FG I S K
Sbjct: 3 KVEWQTELKHKFEQMK---QDKITRYQGV-NLYVKNLDDSIDE-RLRKQFSPFGTITSAK 57
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV 172
V E G SK GF+ F + E A A+ +NG V K +YV
Sbjct: 58 VMM-EGGHSKRFGFICFSSHEEAFKAVMEMNGKIVATKPLYV 98
Score = 119 (46.9 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMXXXXXXXXXXXXXXXXXXXAVKVE 598
MLA+ P++QKQ+LGE L+PL++ P KITGM KV+
Sbjct: 251 MLASAPPQEQKQMLGEWLFPLIQVLHPSPAGKITGMLLEIDNSELLHMLASPESLHSKVD 310
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV +L+ + K + Q+ ++
Sbjct: 311 EAVALLQAHQVKEAAQKIVN 330
Score = 70 (29.7 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYV +L D D L FS F ++ S +V + G S +G++ F S +A +A+
Sbjct: 29 NLYVKNLD-DSIDERLRKQFSPFGTITSAKVMMEG--GHSKRFGFICFSSHEEAFKAVME 85
Query: 73 KN 74
N
Sbjct: 86 MN 87
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 167 DKRIYVGRFIKKSDRVL-PSPAAKYTNLFMKNLDSDV 202
+++ +G ++ +VL PSPA K T + ++ +S++
Sbjct: 259 EQKQMLGEWLFPLIQVLHPSPAGKITGMLLEIDNSEL 295
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 81/187 (43%), Positives = 124/187 (66%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+++KNL SIDN + + F FGNI++C VA EDG S+G+GFV F++EE+A AAIE +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G +++++V +FI + DR A + NL++KNL + TE+HL E F +G+I S
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-QEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG-SKVLYAARAQKKAEREQILRHQF 280
+ DE G SR FGFV ++NP A A+ ++G +G +K LY ARA KAER+Q + +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 281 EEKRKER 287
EE+++++
Sbjct: 294 EERKRQK 300
Score = 307 (113.1 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 68/188 (36%), Positives = 112/188 (59%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL+ + + + + FS FG I + +A+DE+G SRG+GFV+FD+ + AR A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + ++ ++ + + +REQ E+ +K N+YVKN+ ++ T++ L+
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQ-----------EKATHFK--NLYVKNLSEEFTEQHLRE 221
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML-HRKPLYVAIAQR 371
F G ITS K+M DE+G ++ FGFV + +P+ A AV HG L K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 372 KEDRQAHL 379
K +RQ +
Sbjct: 282 KAERQQEI 289
Score = 241 (89.9 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 59/172 (34%), Positives = 95/172 (55%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+Y+ +L + + ++D FS F ++ + V KD G S YG+V+F S A AIE
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDED-GNSRGYGFVHFDSEEAARAAIEKV 173
Query: 74 NHTQLHGKMLRISWSC--RDPDARKSG-VANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + + + + RD + K+ NL+VKNL E L+EMF+ +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKR-IYVGRFIKKSDR 181
+ E+G+S+ GFV +E +SA AA+ L+G +GD + +YV R + K++R
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAER 285
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 365 (133.5 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 69/154 (44%), Positives = 107/154 (69%)
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAA 188
V E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A
Sbjct: 43 VVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 101
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
++TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+
Sbjct: 102 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 161
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEE 282
E MNG I K+++ RAQKK ER+ L+ +FE+
Sbjct: 162 EEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 195
Score = 291 (107.5 bits), Expect = 4.6e-27, Sum P(2) = 4.6e-27
Identities = 65/165 (39%), Positives = 99/165 (60%)
Query: 221 LIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
++ DENG S+G+ FV+F+ + A +A+E MNG ++ + ++ R + + ERE +
Sbjct: 42 IVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA----EL 96
Query: 281 EEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVC 340
K KE +NVY+KN ++V DE LK FSQ G S KVMRD G +KGFGFV
Sbjct: 97 GAKAKEF------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 150
Query: 341 FSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+ E+A+KAV +G + K ++V AQ+K +RQA L+ ++ Q
Sbjct: 151 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 195
Score = 213 (80.0 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 53/145 (36%), Positives = 81/145 (55%)
Query: 43 VCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI----SWSCRDPD--ARK 96
VC ++ G S Y +V+F + A +AIE N L+ + + + S R+ + A+
Sbjct: 44 VCDEN--G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 100
Query: 97 SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAA 156
N+++KN E +D+ L+E+F FG +S KV +GKSKG GFV +E E AN A
Sbjct: 101 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKA 160
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDR 181
+E +NG + K I+VGR KK +R
Sbjct: 161 VEEMNGKEISGKIIFVGRAQKKVER 185
Score = 42 (19.8 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 123 FGNIISCK 130
FGNI+SCK
Sbjct: 2 FGNILSCK 9
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 363 (132.8 bits), Expect = 6.6e-33, P = 6.6e-33
Identities = 85/178 (47%), Positives = 115/178 (64%)
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG 335
L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+L+ FS G+ITSAKVM ++ G +KG
Sbjct: 3 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKG 61
Query: 336 FGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSA 395
FGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+R+AHL QY Q +AG+ A
Sbjct: 62 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPA 121
Query: 396 NVIPSGY-PSLY-YTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSP 451
N I + + P+ Y P V Q RP Y P L R N P + FQ P
Sbjct: 122 NAILNQFQPAAGGYFVPA--VPQAQGRPPY-YTPNQLAQ-MRPN---PRWQQGFQGMP 172
Score = 216 (81.1 bits), Expect = 8.2e-17, P = 8.2e-17
Identities = 44/109 (40%), Positives = 72/109 (66%)
Query: 177 KKSDRVLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+K +++ ++Y NL++KNLD + +E L ++FS FG I S + E+G S+GFG
Sbjct: 5 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFG 63
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++GSK LY A AQ+K ER+ L +Q+ ++
Sbjct: 64 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 112
Score = 187 (70.9 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153
+R GV NL++KNL ++ID+ +L++ F FG+I S KV EDG+SKG GFV F + E A
Sbjct: 16 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 73
Query: 154 NAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNL 198
A+ +NG VG K +YV +K +R A TN +M+ +
Sbjct: 74 TKAVTEMNGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRV 113
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 346 (126.9 bits), Expect = 5.3e-31, P = 5.3e-31
Identities = 69/127 (54%), Positives = 85/127 (66%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCK 130
GNI+SCK
Sbjct: 123 GNILSCK 129
Score = 167 (63.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 51/143 (35%), Positives = 72/143 (50%)
Query: 184 PS-PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNP 241
PS P+ +L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
DA RAL+ MN VI K + +Q R+ LR K + N+++KN+
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQ----RDPSLR-------KSGV-----GNIFIKNL 106
Query: 302 DDDVTDEELKAHFSQCGTITSAK 324
D + ++ L FS G I S K
Sbjct: 107 DKSIDNKALYDTFSAFGNILSCK 129
Score = 128 (50.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 35/130 (26%), Positives = 62/130 (47%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIAS 219
FS FG I S
Sbjct: 118 TFSAFGNILS 127
Score = 108 (43.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD + G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQR 89
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 335 (123.0 bits), Expect = 8.8e-30, P = 8.8e-30
Identities = 66/119 (55%), Positives = 81/119 (68%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCK
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 51/141 (36%), Positives = 72/141 (51%)
Query: 187 AAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
A+ Y +L++ +L SDVTE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN VI K + +Q R+ LR K + NV++KN+D
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQ----RDPSLR-------KSGV-----GNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAK 324
+ ++ L FS G I S K
Sbjct: 109 SIDNKALYDTFSAFGNILSCK 129
Score = 122 (48.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 33/122 (27%), Positives = 59/122 (48%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I + + ++ + S N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFDVIKGKPIRI-MWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 218 AS 219
S
Sbjct: 126 LS 127
Score = 109 (43.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G + S +V RD + G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQR 89
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 319 (117.4 bits), Expect = 5.1e-28, P = 5.1e-28
Identities = 58/121 (47%), Positives = 86/121 (71%)
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYA 263
+E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++ MNG + K +Y
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 264 ARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSA 323
RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE L+ FS GTITSA
Sbjct: 62 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Query: 324 K 324
K
Sbjct: 122 K 122
Score = 212 (79.7 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 49/117 (41%), Positives = 67/117 (57%)
Query: 115 RLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGR 174
RL+++F FG +S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR
Sbjct: 4 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 63
Query: 175 FIKKSDR----------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
KK +R + +Y NL++KNLD + +E L ++FS FG I S
Sbjct: 64 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 120
Score = 171 (65.3 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 37/79 (46%), Positives = 49/79 (62%)
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
DE LK F + G S KVM DE G +KGFGFV F E+A KAV+ +G L+ K +YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 367 AIAQRKEDRQAHLQLQYAQ 385
AQ+K +RQ L+ ++ Q
Sbjct: 62 GRAQKKVERQTELKRKFEQ 80
Score = 130 (50.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 41/123 (33%), Positives = 62/123 (50%)
Query: 25 DGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84
D L D F +F SV+V D + G+S +G+V+F DA +A++ N +L+GK +
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 60
Query: 85 ISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
+ + + D R GV NL+VKNL + ID+ RL++ F FG I
Sbjct: 61 VGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTIT 119
Query: 128 SCK 130
S K
Sbjct: 120 SAK 122
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 327 (120.2 bits), Expect = 1.7e-26, P = 1.7e-26
Identities = 100/352 (28%), Positives = 176/352 (50%)
Query: 10 TPAS---LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TPAS L+V +L P EL A EF +++V + G S +GYV+FLS D
Sbjct: 276 TPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQV-SEVRIGSSKRFGYVDFLSAEDM 334
Query: 67 IRAIEVKNHTQLHGKMLRI----SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
+A+++ N +L G +++ S + ++ LFVKNL + ++ +F+N
Sbjct: 335 DKALQL-NGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN 393
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
+ ++ +++G SKG +++F+TE A A+E GT V + + + +KS +
Sbjct: 394 ---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQE 450
Query: 183 LPSPAAKYTN--LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
+ + L + NL +EE L E F K S+ + ++ G +G+ FV F
Sbjct: 451 SQKGGGERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPT 507
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI-LRHQFEEKRKERILKYKGSNVYVK 299
+DA+ AL + N + I + + + ++ + R F ++ K ++V+
Sbjct: 508 AEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSK---------TLFVR 558
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKA 350
+ +D T+E L+ F G+I SA+++ D + G +KGFGFV FSSPE+A A
Sbjct: 559 GLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607
Score = 263 (97.6 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 80/260 (30%), Positives = 135/260 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L+V +L VT+ E+ + F ++ VR+ + G S Y+ F + +A +A+E
Sbjct: 372 TLFVKNLPYRVTEDEMKNVF---ENALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEE 427
Query: 73 KNHTQLHGKMLRISWSCR--DPDARKSG----VANLFVKNLIESIDNVRLQEMFQNFGNI 126
K T++ G+ + I ++ +++K G L V NL + LQE+F+ +I
Sbjct: 428 KQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSI 487
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
K+ + G+ KG+ FV+F T E A A+ + N T + + I + F S +
Sbjct: 488 ---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL-EFSSPSWQKGNMN 543
Query: 187 AAKYTN-----LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
A N LF++ L D TEE L E F G I++ ++ + G+S+GFGFV+F +P
Sbjct: 544 ARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSP 601
Query: 242 DDARRALEAM-NGSVIGSKV 260
+DA+ A EAM +G + G+KV
Sbjct: 602 EDAKAAKEAMEDGEIDGNKV 621
Score = 153 (58.9 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 49/195 (25%), Positives = 102/195 (52%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENGTSRGFGFVNFDNPDD 243
+PA+ ++ LF+KNL E L +F GK +L ++ G+S+ FG+V+F + +D
Sbjct: 276 TPASAFS-LFVKNLTPTKDYEELRTAIKEFFGK-KNLQVSEVRIGSSKRFGYVDFLSAED 333
Query: 244 ARRALEAMNGS-VIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+AL+ +NG ++G ++ + +K +E + +E +KER + ++VKN+
Sbjct: 334 MDKALQ-LNGKKLMGLEI----KLEKAKSKESL-----KENKKERDAR----TLFVKNLP 379
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
VT++E+K F +++ +++G +KG ++ F + EA KA+ G + +
Sbjct: 380 YRVTEDEMKNVFENA---LEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGR 436
Query: 363 PLYVAIAQRKEDRQA 377
+ + K +++
Sbjct: 437 AMVIDYTGEKSQQES 451
Score = 142 (55.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 41/161 (25%), Positives = 82/161 (50%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
LF+KNL VTE+ + F ++ +L ++ G+S+G ++ F +A +ALE
Sbjct: 373 LFVKNLPYRVTEDEMKNVFENALEVRLVL---NKEGSSKGMAYIEFKTEAEAEKALEEKQ 429
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ + + + +K+++E ++ ER + + V N+ ++E L+
Sbjct: 430 GTEVDGRAMVIDYTGEKSQQES------QKGGGER----ESKTLIVNNLSYAASEETLQE 479
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + TS K+ ++ +G KG+ FV F + E+A +A+N+
Sbjct: 480 LFKKA---TSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNS 517
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 327 (120.2 bits), Expect = 1.7e-26, P = 1.7e-26
Identities = 100/352 (28%), Positives = 176/352 (50%)
Query: 10 TPAS---LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TPAS L+V +L P EL A EF +++V + G S +GYV+FLS D
Sbjct: 276 TPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQV-SEVRIGSSKRFGYVDFLSAEDM 334
Query: 67 IRAIEVKNHTQLHGKMLRI----SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
+A+++ N +L G +++ S + ++ LFVKNL + ++ +F+N
Sbjct: 335 DKALQL-NGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN 393
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
+ ++ +++G SKG +++F+TE A A+E GT V + + + +KS +
Sbjct: 394 ---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQE 450
Query: 183 LPSPAAKYTN--LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
+ + L + NL +EE L E F K S+ + ++ G +G+ FV F
Sbjct: 451 SQKGGGERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPT 507
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI-LRHQFEEKRKERILKYKGSNVYVK 299
+DA+ AL + N + I + + + ++ + R F ++ K ++V+
Sbjct: 508 AEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSK---------TLFVR 558
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKA 350
+ +D T+E L+ F G+I SA+++ D + G +KGFGFV FSSPE+A A
Sbjct: 559 GLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607
Score = 263 (97.6 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 80/260 (30%), Positives = 135/260 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L+V +L VT+ E+ + F ++ VR+ + G S Y+ F + +A +A+E
Sbjct: 372 TLFVKNLPYRVTEDEMKNVF---ENALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEE 427
Query: 73 KNHTQLHGKMLRISWSCR--DPDARKSG----VANLFVKNLIESIDNVRLQEMFQNFGNI 126
K T++ G+ + I ++ +++K G L V NL + LQE+F+ +I
Sbjct: 428 KQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSI 487
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
K+ + G+ KG+ FV+F T E A A+ + N T + + I + F S +
Sbjct: 488 ---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL-EFSSPSWQKGNMN 543
Query: 187 AAKYTN-----LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
A N LF++ L D TEE L E F G I++ ++ + G+S+GFGFV+F +P
Sbjct: 544 ARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSP 601
Query: 242 DDARRALEAM-NGSVIGSKV 260
+DA+ A EAM +G + G+KV
Sbjct: 602 EDAKAAKEAMEDGEIDGNKV 621
Score = 153 (58.9 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 49/195 (25%), Positives = 102/195 (52%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENGTSRGFGFVNFDNPDD 243
+PA+ ++ LF+KNL E L +F GK +L ++ G+S+ FG+V+F + +D
Sbjct: 276 TPASAFS-LFVKNLTPTKDYEELRTAIKEFFGK-KNLQVSEVRIGSSKRFGYVDFLSAED 333
Query: 244 ARRALEAMNGS-VIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+AL+ +NG ++G ++ + +K +E + +E +KER + ++VKN+
Sbjct: 334 MDKALQ-LNGKKLMGLEI----KLEKAKSKESL-----KENKKERDAR----TLFVKNLP 379
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
VT++E+K F +++ +++G +KG ++ F + EA KA+ G + +
Sbjct: 380 YRVTEDEMKNVFENA---LEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGR 436
Query: 363 PLYVAIAQRKEDRQA 377
+ + K +++
Sbjct: 437 AMVIDYTGEKSQQES 451
Score = 142 (55.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 41/161 (25%), Positives = 82/161 (50%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
LF+KNL VTE+ + F ++ +L ++ G+S+G ++ F +A +ALE
Sbjct: 373 LFVKNLPYRVTEDEMKNVFENALEVRLVL---NKEGSSKGMAYIEFKTEAEAEKALEEKQ 429
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ + + + +K+++E ++ ER + + V N+ ++E L+
Sbjct: 430 GTEVDGRAMVIDYTGEKSQQES------QKGGGER----ESKTLIVNNLSYAASEETLQE 479
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + TS K+ ++ +G KG+ FV F + E+A +A+N+
Sbjct: 480 LFKKA---TSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNS 517
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 305 (112.4 bits), Expect = 1.8e-26, P = 1.8e-26
Identities = 59/112 (52%), Positives = 78/112 (69%)
Query: 59 NFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQE 118
NF P DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L +
Sbjct: 2 NFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYD 61
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
F FGNI+SCKV E+G SKG+ FV FET+E+A+ AIE +NG + D+++
Sbjct: 62 TFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 112
Score = 157 (60.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 47/127 (37%), Positives = 66/127 (51%)
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
NF P DA RAL+ MN VI K + +Q R+ LR K + NV
Sbjct: 2 NFQQPADAERALDTMNFDVIKGKPIRIMWSQ----RDPSLR-------KSGV-----GNV 45
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
++KN+D + ++ L FS G I S KV+ DE G +KG+ FV F + E A KA+ +G
Sbjct: 46 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 104
Query: 357 YMLH-RK 362
+L+ RK
Sbjct: 105 MLLNDRK 111
Score = 152 (58.6 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 35/113 (30%), Positives = 61/113 (53%)
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
F+ A A++ +N + K I + + ++ + S N+F+KNLD + +
Sbjct: 3 FQQPADAERALDTMNFDVIKGKPIRI-MWSQRDPSLRKSGVG---NVFIKNLDKSIDNKA 58
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK 259
L + FS FG I S + DENG S+G+ FV+F+ + A +A+E MNG ++ +
Sbjct: 59 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDR 110
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 324 (119.1 bits), Expect = 3.6e-26, P = 3.6e-26
Identities = 97/346 (28%), Positives = 173/346 (50%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SL+V +L P EL A EF +++V + G S +GYV+FLS D +A+++
Sbjct: 280 SLFVKNLTPTKDYEELRTAIKEFFGKKNLQV-SEVRIGSSKRFGYVDFLSAEDMDKALQL 338
Query: 73 KNHTQLHGKMLRI----SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
N +L G +++ S + ++ LFVKNL + ++ +F+N +
Sbjct: 339 -NGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFEN---ALE 394
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
++ +++G SKG +++F+TE A A+E GT V + + + +KS +
Sbjct: 395 VRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGG 454
Query: 189 KYTN--LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
+ + L + NL +EE L E F K S+ + ++ G +G+ FV F +DA+
Sbjct: 455 ERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKE 511
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQI-LRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
AL + N + I + + + ++ + R F ++ K ++V+ + +D
Sbjct: 512 ALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSK---------TLFVRGLSEDT 562
Query: 306 TDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKA 350
T+E L+ F G+I SA+++ D + G +KGFGFV FSSPE+A A
Sbjct: 563 TEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAA 605
Score = 263 (97.6 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 80/260 (30%), Positives = 135/260 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L+V +L VT+ E+ + F ++ VR+ + G S Y+ F + +A +A+E
Sbjct: 370 TLFVKNLPYRVTEDEMKNVF---ENALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEE 425
Query: 73 KNHTQLHGKMLRISWSCR--DPDARKSG----VANLFVKNLIESIDNVRLQEMFQNFGNI 126
K T++ G+ + I ++ +++K G L V NL + LQE+F+ +I
Sbjct: 426 KQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSI 485
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
K+ + G+ KG+ FV+F T E A A+ + N T + + I + F S +
Sbjct: 486 ---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL-EFSSPSWQKGNMN 541
Query: 187 AAKYTN-----LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
A N LF++ L D TEE L E F G I++ ++ + G+S+GFGFV+F +P
Sbjct: 542 ARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSP 599
Query: 242 DDARRALEAM-NGSVIGSKV 260
+DA+ A EAM +G + G+KV
Sbjct: 600 EDAKAAKEAMEDGEIDGNKV 619
Score = 160 (61.4 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 51/203 (25%), Positives = 105/203 (51%)
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENGTSRGFGF 235
KK + +PA+ ++ LF+KNL E L +F GK +L ++ G+S+ FG+
Sbjct: 266 KKKKTEIKAPASAFS-LFVKNLTPTKDYEELRTAIKEFFGK-KNLQVSEVRIGSSKRFGY 323
Query: 236 VNFDNPDDARRALEAMNGS-VIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS 294
V+F + +D +AL+ +NG ++G ++ + +K +E + +E +KER +
Sbjct: 324 VDFLSAEDMDKALQ-LNGKKLMGLEI----KLEKAKSKESL-----KENKKERDAR---- 369
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
++VKN+ VT++E+K F +++ +++G +KG ++ F + EA KA+
Sbjct: 370 TLFVKNLPYRVTEDEMKNVFENA---LEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEK 426
Query: 355 HGYMLHRKPLYVAIAQRKEDRQA 377
G + + + + K +++
Sbjct: 427 QGTEVDGRAMVIDYTGEKSQQES 449
Score = 142 (55.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 41/161 (25%), Positives = 82/161 (50%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
LF+KNL VTE+ + F ++ +L ++ G+S+G ++ F +A +ALE
Sbjct: 371 LFVKNLPYRVTEDEMKNVFENALEVRLVL---NKEGSSKGMAYIEFKTEAEAEKALEEKQ 427
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ + + + +K+++E ++ ER + + V N+ ++E L+
Sbjct: 428 GTEVDGRAMVIDYTGEKSQQES------QKGGGER----ESKTLIVNNLSYAASEETLQE 477
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + TS K+ ++ +G KG+ FV F + E+A +A+N+
Sbjct: 478 LFKKA---TSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNS 515
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 301 (111.0 bits), Expect = 4.8e-26, P = 4.8e-26
Identities = 61/115 (53%), Positives = 76/115 (66%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQE 118
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L +
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Score = 148 (57.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 45/129 (34%), Positives = 66/129 (51%)
Query: 184 PS-PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNP 241
PS P+ +L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
DA RAL+ MN VI K + +Q R+ LR K + N+++KN+
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQ----RDPSLR-------KSGV-----GNIFIKNL 106
Query: 302 DDDVTDEEL 310
D + ++ L
Sbjct: 107 DKSIDNKAL 115
Score = 108 (43.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD + G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ KP+ + +QR
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQR 89
Score = 101 (40.6 bits), Expect = 0.00019, P = 0.00019
Identities = 29/120 (24%), Positives = 56/120 (46%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + + + ++ + S N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 298 (110.0 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 60/105 (57%), Positives = 73/105 (69%)
Query: 49 TGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLI 108
T RS Y YVNF P DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 62
Query: 109 ESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153
+SIDN L + F FGNI+SCKV E+G SKG+GFV FET+E+A
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAA 106
Score = 156 (60.0 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 44/120 (36%), Positives = 63/120 (52%)
Query: 230 SRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERIL 289
S G+ +VNF P DA RAL+ MN VI K + +Q R+ LR K +
Sbjct: 6 SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ----RDPSLR-------KSGV- 53
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASK 349
N+++KN+D + ++ L FS G I S KV+ DE G +KG+GFV F + E A +
Sbjct: 54 ----GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 108
Score = 151 (58.2 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 34/109 (31%), Positives = 59/109 (54%)
Query: 138 KSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKN 197
+S G+ +V F+ A A++ +N + K + + + ++ + S N+F+KN
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI-MWSQRDPSLRKSGVG---NIFIKN 60
Query: 198 LDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
LD + + L + FS FG I S + DENG S+G+GFV+F+ + A R
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 108
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 318 (117.0 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 98/349 (28%), Positives = 175/349 (50%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
+TTP +L++G+L+P+ + EL A SE + + V D TG + +GYV+F S D
Sbjct: 304 STTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLE 362
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNI 126
+A+E+ ++ G +++ + D++K A L KNL +I L+E+F++
Sbjct: 363 KALELTG-LKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED---A 417
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDRVL 183
+ ++ S+DGKSKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 418 LEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTG 476
Query: 184 PSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + + L + NL TEE L E F K + + +++ G S+G+ F+ F +
Sbjct: 477 KNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEFASF 533
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA+ AL + N I + + R + + R R + ++VK +
Sbjct: 534 EDAKEALNSCNKMEIEGRTI---RLELQGPRGS------PNARSQ-----PSKTLFVKGL 579
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 580 SEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 626
Score = 253 (94.1 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 77/259 (29%), Positives = 132/259 (50%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + + V S G+S Y+ F S DA + +E
Sbjct: 395 TLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 449
Query: 73 KNHTQLHGKMLRISWSCRDPDARK--------SGVAN-LFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ ++ SG + L + NL S LQE+F+
Sbjct: 450 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 509
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV ++ GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 510 TFI---KVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTI---RLELQGPRGS 563
Query: 184 PSPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +
Sbjct: 564 PNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEE 621
Query: 243 DARRALEAM-NGSVIGSKV 260
DA+ A EAM +G + G+KV
Sbjct: 622 DAKAAKEAMEDGEIDGNKV 640
Score = 151 (58.2 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 44/161 (27%), Positives = 81/161 (50%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L KNL ++TE+ L E F +I L+++D G S+G ++ F + DA + LE
Sbjct: 396 LLAKNLSFNITEDELKEVFEDALEIR--LVSQD--GKSKGIAYIEFKSEADAEKNLEEKQ 451
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ I + + +K +R+ E K + + + N+ T+E L+
Sbjct: 452 GAEIDGRSVSLYYTGEKGQRQ-------ERTGKNSTWSGESKTLVLSNLSYSATEETLQE 504
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + T KV ++++G +KG+ F+ F+S E+A +A+N+
Sbjct: 505 VFEKA---TFIKVPQNQQGKSKGYAFIEFASFEDAKEALNS 542
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 255 (94.8 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 66/192 (34%), Positives = 105/192 (54%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
N+FVK+L ++ L+ +F +G ++S KV G S G+GFV+F + + + AAIE L
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEEL 169
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
+G +K++ + + + + +KY NLF+K L DVT++ L + F FGKI
Sbjct: 170 DGYQYQNKKL-----LCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKII 224
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK------VLYAARAQKKAER 272
+ D NG S+ GFV F + DA +A++AMNG I V YA Q+K R
Sbjct: 225 ECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKYADTEQQKISR 284
Query: 273 EQI-LRHQFEEK 283
+Q ++ ++EK
Sbjct: 285 KQRKMQTIYQEK 296
Score = 242 (90.2 bits), Expect = 7.2e-17, P = 7.2e-17
Identities = 63/193 (32%), Positives = 102/193 (52%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN+F+K+L + +E L FSK+GK+ S + D G S G+GFV F +P ++ A+E
Sbjct: 109 TNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEE 168
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++G Y + +K R L + + KY +N+++K + DVTD++L
Sbjct: 169 LDG--------YQYQNKKLLCR---LSNLYTNLNS----KYPSNNLFIKPLPYDVTDDQL 213
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK---PLYVA 367
+ F G I KVM D G +K GFV FSS +ASKA++ +G +++ PL V
Sbjct: 214 RKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVK 273
Query: 368 IAQRKEDRQAHLQ 380
A ++ + + Q
Sbjct: 274 YADTEQQKISRKQ 286
Score = 200 (75.5 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 52/155 (33%), Positives = 87/155 (56%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+++V L + D +L + FS++ + S +V D G S YG+V F SP ++ AIE
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPK-GNSYGYGFVRFSSPQESAAAIEE 168
Query: 73 KNHTQLHGKML--RISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
+ Q K L R+S + +++ NLF+K L + + +L+++F+ FG II CK
Sbjct: 169 LDGYQYQNKKLLCRLSNLYTNLNSKYPS-NNLFIKPLPYDVTDDQLRKLFEPFGKIIECK 227
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTV 165
V +G+SK GFV+F +E A+ AI+ +NG +
Sbjct: 228 VMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRI 262
Score = 161 (61.7 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 34/80 (42%), Positives = 51/80 (63%)
Query: 285 KERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSP 344
KE L+ +NV+VK++ + DE+L+ FS+ G + S+KVM D KG + G+GFV FSSP
Sbjct: 100 KELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSP 159
Query: 345 EEASKAVNTFHGYMLHRKPL 364
+E++ A+ GY K L
Sbjct: 160 QESAAAIEELDGYQYQNKKL 179
Score = 152 (58.6 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 41/129 (31%), Positives = 73/129 (56%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALE 249
TNLF+ +L V + +L + FS+FGK+ S+ + D++ G ++G+GFV F D+A + +
Sbjct: 769 TNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQK 828
Query: 250 AMNGSVIGSKVLYAA-RAQKKAEREQILRHQFEEKRK---ERILKYKGS----NVYVKNI 301
MNG IGSK L + +K++ HQ + + K E+ L+ + N+ NI
Sbjct: 829 EMNGFRIGSKFLKVKLKNEKESMNSGKSHHQHQNQNKNQNEQHLEEEEEEQTFNLPENNI 888
Query: 302 DDDVTDEEL 310
D + +++E+
Sbjct: 889 DGNESNQEI 897
Score = 131 (51.2 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 36/112 (32%), Positives = 64/112 (57%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED-GKSKGHGFVQF-ETEESANAAIE 158
NLFV +L +D+ L ++F FG + S +V T +D G++KG+GFV+F +T+E+ E
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEK 210
+NG +G K + V +K + S + + + +N + + E+HL E+
Sbjct: 830 -MNGFRIGSKFLKVK--LKNEKESMNSGKSHHQH---QNQNKNQNEQHLEEE 875
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T +L+V L P V D LF FS+F L SVRV D TG + YG+V F +A++
Sbjct: 766 TNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALK 825
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQE 118
+ N ++ K L++ + ++ SG ++ +N ++ + L+E
Sbjct: 826 CQKEMNGFRIGSKFLKVKLK-NEKESMNSGKSHHQHQNQNKNQNEQHLEE 874
Score = 116 (45.9 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVN 352
+N++V ++ V D L FSQ G + S +V+ D + G NKG+GFV F +EA K
Sbjct: 769 TNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQK 828
Query: 353 TFHGYMLHRKPLYVAIAQRKE 373
+G+ + K L V + KE
Sbjct: 829 EMNGFRIGSKFLKVKLKNEKE 849
Score = 86 (35.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L++ L DVTD +L F F + +V D G+S G+V F S DA +AI+
Sbjct: 198 NLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHN-GQSKFAGFVRFSSELDASKAIDA 256
Query: 73 KNHTQLH 79
N +++
Sbjct: 257 MNGVRIN 263
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 227 (85.0 bits), Expect = 5.1e-25, Sum P(2) = 5.1e-25
Identities = 50/151 (33%), Positives = 86/151 (56%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L +++ EL FS + S ++ +D G S YG+VN+L+P+DA RAI
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ D+ K ANL++ L +++ ++EMF +G II+ +V
Sbjct: 95 LNGLRLQSKTIKVSYARPSSDSIKD--ANLYISGLPKTMTQKDVEEMFGRYGRIINSRVL 152
Query: 133 TSE-DGKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G F++F+ A AI++LNG
Sbjct: 153 VDQASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 187 (70.9 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 47/155 (30%), Positives = 78/155 (50%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ L+ +F + G + S K+ + G S G+GFV + A AI
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V SD + K NL++ L +T++ + E F ++G+I +
Sbjct: 95 LNGLRLQSKTIKVSYARPSSDSI------KDANLYISGLPKTMTQKDVEEMFGRYGRIIN 148
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
+ D+ +G SRG F+ FD +A A++ +NG
Sbjct: 149 SRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 143 (55.4 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 31/105 (29%), Positives = 64/105 (60%)
Query: 280 FEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGF 338
+E+ + ++ K +N+ V + +++ +EL++ FS G + SAK++RD+ G + G+GF
Sbjct: 21 YEDHMADELIDSK-TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 79
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
V + +P +A +A++T +G L K + V+ A+ D + A+L +
Sbjct: 80 VNYLNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYI 124
Score = 140 (54.3 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L +++++ L FS G++ S + RD+ G S G+GFVN+ NP+DA RA+
Sbjct: 34 TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIS 93
Query: 250 AMNGSVIGSKVLYAARAQKKAE 271
+NG + SK + + A+ ++
Sbjct: 94 TLNGLRLQSKTIKVSYARPSSD 115
Score = 118 (46.6 bits), Expect = 5.1e-25, Sum P(2) = 5.1e-25
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV + ++A A+ ++
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G K+L + K+ +
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
Score = 112 (44.5 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
+++ N+ D + L F G +T+ KV+RD KGFGFV + EEA+ A+ +
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V+ K +
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
Score = 111 (44.1 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 33/91 (36%), Positives = 43/91 (47%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETE 150
P SG +F+ NL + D L +MF FG + + KV K KG GFV
Sbjct: 251 PGNSSSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHY 309
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
E A AI +LNG +GDK + V KS +
Sbjct: 310 EEAAMAIASLNGYRLGDKILQVSFKTSKSHK 340
Score = 94 (38.1 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 17/66 (25%), Positives = 38/66 (57%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
K +N+Y+ + +T ++++ F + G I +++V+ D+ G+++G F+ F EA A
Sbjct: 118 KDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDA 177
Query: 351 VNTFHG 356
+ +G
Sbjct: 178 IKDLNG 183
Score = 60 (26.2 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LY+ L +T ++ + F + + + RV D +G S ++ F +A AI+
Sbjct: 120 ANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIK 179
Query: 72 VKN 74
N
Sbjct: 180 DLN 182
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 314 (115.6 bits), Expect = 5.2e-25, P = 5.2e-25
Identities = 99/351 (28%), Positives = 175/351 (49%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEF---KSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
TTP +L++G+L+P+ + EL A SE LA+V D TG + +GYV+F S D
Sbjct: 308 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV----DVRTGTNRKFGYVDFESAED 363
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFG 124
+A+E+ ++ G +++ + D++K A L KNL +I L+E+F++
Sbjct: 364 LEKALELTG-LKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED-- 419
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDR 181
+ ++ S+DG+SKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 420 -AVEIRLV-SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQER 477
Query: 182 VLPSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
+ + + L + NL TEE L E F K + + ++ +G S+G+ F+ F
Sbjct: 478 TGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFA 534
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ +DA+ AL + N I + + R + + R R + ++VK
Sbjct: 535 SFEDAKEALNSCNKMEIEGRTI---RLELQGPRGS------PNARSQ-----PSKTLFVK 580
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+ +D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 581 GLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 629
Score = 253 (94.1 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 78/259 (30%), Positives = 132/259 (50%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + +V + S GRS Y+ F S DA + +E
Sbjct: 398 TLLAKNLSFNITEDELKEVFED-----AVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEE 452
Query: 73 KNHTQLHGKMLRISWSCRDPDARK--------SGVAN-LFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ ++ SG + L + NL S LQE+F+
Sbjct: 453 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 512
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV + GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 513 TFI---KVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTI---RLELQGPRGS 566
Query: 184 PSPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +
Sbjct: 567 PNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEE 624
Query: 243 DARRALEAM-NGSVIGSKV 260
DA+ A EAM +G + G+KV
Sbjct: 625 DAKAAKEAMEDGEIDGNKV 643
Score = 147 (56.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 44/161 (27%), Positives = 79/161 (49%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L KNL ++TE+ L E F +I L+++D G S+G ++ F + DA + LE
Sbjct: 399 LLAKNLSFNITEDELKEVFEDAVEIR--LVSQD--GRSKGIAYIEFKSEADAEKNLEEKQ 454
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ I + + +K +R+ E K + + + N+ T+E L+
Sbjct: 455 GAEIDGRSVSLYYTGEKGQRQ-------ERTGKNSTWSGESKTLVLSNLSYSATEETLQE 507
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + T KV ++ G +KG+ F+ F+S E+A +A+N+
Sbjct: 508 VFEKA---TFIKVPQNPHGKSKGYAFIEFASFEDAKEALNS 545
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 314 (115.6 bits), Expect = 5.2e-25, P = 5.2e-25
Identities = 99/351 (28%), Positives = 175/351 (49%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEF---KSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
TTP +L++G+L+P+ + EL A SE LA+V D TG + +GYV+F S D
Sbjct: 309 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV----DVRTGTNRKFGYVDFESAED 364
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFG 124
+A+E+ ++ G +++ + D++K A L KNL +I L+E+F++
Sbjct: 365 LEKALELTG-LKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED-- 420
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDR 181
+ ++ S+DG+SKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 421 -AVEIRLV-SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQER 478
Query: 182 VLPSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
+ + + L + NL TEE L E F K + + ++ +G S+G+ F+ F
Sbjct: 479 TGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFA 535
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ +DA+ AL + N I + + R + + R R + ++VK
Sbjct: 536 SFEDAKEALNSCNKMEIEGRTI---RLELQGPRGS------PNARSQ-----PSKTLFVK 581
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+ +D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 582 GLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 630
Score = 253 (94.1 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 78/259 (30%), Positives = 132/259 (50%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + +V + S GRS Y+ F S DA + +E
Sbjct: 399 TLLAKNLSFNITEDELKEVFED-----AVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEE 453
Query: 73 KNHTQLHGKMLRISWSCRDPDARK--------SGVAN-LFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ ++ SG + L + NL S LQE+F+
Sbjct: 454 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 513
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV + GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 514 TFI---KVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTI---RLELQGPRGS 567
Query: 184 PSPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +
Sbjct: 568 PNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEE 625
Query: 243 DARRALEAM-NGSVIGSKV 260
DA+ A EAM +G + G+KV
Sbjct: 626 DAKAAKEAMEDGEIDGNKV 644
Score = 147 (56.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 44/161 (27%), Positives = 79/161 (49%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L KNL ++TE+ L E F +I L+++D G S+G ++ F + DA + LE
Sbjct: 400 LLAKNLSFNITEDELKEVFEDAVEIR--LVSQD--GRSKGIAYIEFKSEADAEKNLEEKQ 455
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ I + + +K +R+ E K + + + N+ T+E L+
Sbjct: 456 GAEIDGRSVSLYYTGEKGQRQ-------ERTGKNSTWSGESKTLVLSNLSYSATEETLQE 508
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + T KV ++ G +KG+ F+ F+S E+A +A+N+
Sbjct: 509 VFEKA---TFIKVPQNPHGKSKGYAFIEFASFEDAKEALNS 546
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 222 (83.2 bits), Expect = 8.3e-25, Sum P(2) = 8.3e-25
Identities = 50/157 (31%), Positives = 87/157 (55%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 207 (77.9 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 54/171 (31%), Positives = 90/171 (52%)
Query: 88 SCRDP-DA--RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHG 143
+C P D+ + NL V L +++ L+ +F + G I SCK+ + G+S G+G
Sbjct: 24 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 144 FVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVT 203
FV + + A AI LNG + K I V + + S S + + NL++ L +T
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMT 137
Query: 204 EEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
++ L + FS++G+I + I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 143 (55.4 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 135 (52.6 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T+E L F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 124 (48.7 bits), Expect = 8.3e-25, Sum P(2) = 8.3e-25
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
Score = 110 (43.8 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 325 NGYRLGDRVLQVSFKTNK 342
Score = 110 (43.8 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+ +N+YV + +T +EL+ FSQ G I +++++ D+ GI++G GF+ F EA +A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 351 VNTFHG 356
+ +G
Sbjct: 183 IKGLNG 188
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 224 (83.9 bits), Expect = 8.3e-25, Sum P(2) = 8.3e-25
Identities = 50/151 (33%), Positives = 85/151 (56%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T EL F + S ++ +D TG+S YG+VN++ P DA +AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ R P + ANL+V L +++ L+++F FG II+ ++
Sbjct: 129 LNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRIL 186
Query: 133 TSE-DGKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G GF++F+ A AI+ LNG
Sbjct: 187 VDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Score = 217 (81.4 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 53/164 (32%), Positives = 87/164 (53%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETE 150
P+ + NL V L +++ L+ +F + G I SCK+ + G+S G+GFV +
Sbjct: 60 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 119
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEK 210
+ A AI LNG + K I V + + S S + + NL++ L +T++ L +
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQL 173
Query: 211 FSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
FS+FG+I + I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 174 FSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Score = 144 (55.7 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN 127
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 128 TLNGLRLQTKTIKVSYAR 145
Score = 134 (52.2 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T+E L F G+I S + RD+ G S G+GFVN+ P DA +A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN 127
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 128 TLNGLRLQTKTIKVSYAR 145
Score = 127 (49.8 bits), Expect = 8.3e-25, Sum P(2) = 8.3e-25
Identities = 30/91 (32%), Positives = 47/91 (51%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNP 241
LP+ A +F+ NL D E L + F FG + ++ + RD N +GFGFV N
Sbjct: 297 LPAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 356
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAER 272
D+A A+ ++NG +G +VL + K +
Sbjct: 357 DEAAVAIASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 110 (43.8 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 367 NGYRLGDRVLQVSFKTNK 384
Score = 110 (43.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 25/95 (26%), Positives = 50/95 (52%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+ +N+YV + +T +EL+ FSQ G I +++++ D+ G+++G GF+ F EA +A
Sbjct: 152 RDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEA 211
Query: 351 VNTFHGYMLH--RKPLYVAIAQRKEDRQAHLQLQY 383
+ +G +P+ V A + + L +
Sbjct: 212 IKGLNGQKPPGATEPITVKFANNPSQKSSQALLSH 246
Score = 105 (42.0 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L +MF FG + + KV K KG GFV + A AI +L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 367 NGYRLGDRVLQV 378
Score = 86 (35.3 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 30/99 (30%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS+F + + R+ D TG S G++ F
Sbjct: 146 PSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRR 205
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 206 VEAEEAIKGLNGQKPPGATEPITVKFANNPSQKSSQALL 244
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 217 (81.4 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 49/151 (32%), Positives = 80/151 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T EL FS + S ++ +D G S YG+VN+++ DA RAI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ + K ANL++ L S+ +++MF FG II+ +V
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKD--ANLYISGLPRSMTQKDVEDMFSRFGRIINSRVL 138
Query: 133 TSED-GKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G F++F+ A AI N NG
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 204 (76.9 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 53/167 (31%), Positives = 84/167 (50%)
Query: 89 CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQF 147
CRD R NL V L +++ L+ +F + G + S K+ + G S G+GFV +
Sbjct: 13 CRDDIGR----TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHL 207
T + A AI LNG + K I V + + S V+ K NL++ L +T++ +
Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVS-YARPSSEVI-----KDANLYISGLPRSMTQKDV 122
Query: 208 VEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNG 253
+ FS+FG+I + + D+ G SRG F+ FD +A A+ NG
Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 146 (56.5 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 46/174 (26%), Positives = 84/174 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T++ L FS G++ S + RD+ G+ F N A+ A A
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYVTAKDAERA 77
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + E I K +N+Y+ + +T +++
Sbjct: 78 IN-------TLNGLRLQSKT-----IKVSYARPSSEVI---KDANLYISGLPRSMTQKDV 122
Query: 311 KAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ FS+ G I +++V+ D+ G+++G F+ F EA +A+ F+G H+ P
Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG---HKPP 173
Score = 135 (52.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 29/91 (31%), Positives = 57/91 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +EL++ FS G + SAK++RD+ G + G+GFV + + ++A +A+N
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 353 TFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
T +G L K + V+ A+ + + A+L +
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYI 110
Score = 126 (49.4 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNP 241
+P A+ +F+ NL D E L + F FG + ++ + RD N +GFGFV N
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAER 272
++A A+ ++NG +G K+L + K+ +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 115 (45.5 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
+++ N+ D + L F G +T+ KV+RD KGFGFV ++ EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 113 (44.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 33/91 (36%), Positives = 43/91 (47%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETE 150
P SG +F+ NL + D L +MF FG + + KV K KG GFV
Sbjct: 237 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
E A AI +LNG +GDK + V KS +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 81 (33.6 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
A+LY+ L +T ++ D FS F + + RV D TTG S ++ F +A AI
Sbjct: 106 ANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 222 (83.2 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 50/157 (31%), Positives = 87/157 (55%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 208 (78.3 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 55/174 (31%), Positives = 92/174 (52%)
Query: 85 ISWSCRDP-DA--RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSK 140
I+ +C P D+ + NL V L +++ L+ +F + G I SCK+ + G+S
Sbjct: 21 INNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSL 80
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+GFV + + A AI LNG + K I V + + S S + + NL++ L
Sbjct: 81 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPK 134
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
+T++ L + FS++G+I + I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 143 (55.4 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 135 (52.6 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T+E L F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 124 (48.7 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 110 (43.8 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
Score = 110 (43.8 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+ +N+YV + +T +EL+ FSQ G I +++++ D+ GI++G GF+ F EA +A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 351 VNTFHG 356
+ +G
Sbjct: 183 IKGLNG 188
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 222 (83.2 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 50/157 (31%), Positives = 87/157 (55%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 207 (77.9 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 54/171 (31%), Positives = 90/171 (52%)
Query: 88 SCRDP-DA--RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHG 143
+C P D+ + NL V L +++ L+ +F + G I SCK+ + G+S G+G
Sbjct: 24 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 144 FVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVT 203
FV + + A AI LNG + K I V + + S S + + NL++ L +T
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMT 137
Query: 204 EEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
++ L + FS++G+I + I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 143 (55.4 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 135 (52.6 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T+E L F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 124 (48.7 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
Score = 110 (43.8 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 339 NGYRLGDRVLQVSFKTNK 356
Score = 110 (43.8 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+ +N+YV + +T +EL+ FSQ G I +++++ D+ GI++G GF+ F EA +A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 351 VNTFHG 356
+ +G
Sbjct: 183 IKGLNG 188
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 222 (83.2 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 50/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L +T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 62 TEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 121
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 179
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 180 ITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 211 (79.3 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 55/171 (32%), Positives = 90/171 (52%)
Query: 88 SCRDP-DA--RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHG 143
+C P D+ + NL V L +S+ L+ +F + G I SCK+ + G+S G+G
Sbjct: 52 NCSSPIDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 111
Query: 144 FVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVT 203
FV + + A AI LNG + K I V + + S S + + NL++ L +T
Sbjct: 112 FVNYVDPKDAEKAINTLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMT 165
Query: 204 EEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
++ L + FS++G+I + I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 166 QKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 142 (55.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + +T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 67 TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAIN 126
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 127 TLNGLRLQTKTIKVSYAR 144
Score = 134 (52.2 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L +T+E L F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 67 TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAIN 126
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 127 TLNGLRLQTKTIKVSYAR 144
Score = 126 (49.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNP 241
+P A +F+ NL D E L + F FG + ++ + RD N +GFGFV N
Sbjct: 297 IPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 356
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAER 272
D+A A+ ++NG +G +VL + K +
Sbjct: 357 DEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 110 (43.8 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 367 NGYRLGDRVLQVSFKTNK 384
Score = 108 (43.1 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+ +N+YV + +T +EL+ FSQ G I +++++ D+ G+++G GF+ F EA +A
Sbjct: 151 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEA 210
Query: 351 VNTFHGYM--LHRKPLYVAIAQRKEDR--QAHLQLQY 383
+ +G +P+ V A + QA L Y
Sbjct: 211 IKGLNGQKPPAATEPITVKFANNPSQKTNQAILSQLY 247
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 222 (83.2 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 50/157 (31%), Positives = 87/157 (55%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 63 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 180
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 181 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 208 (78.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 55/174 (31%), Positives = 92/174 (52%)
Query: 85 ISWSCRDP-DA--RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSK 140
I+ +C P D+ + NL V L +++ L+ +F + G I SCK+ + G+S
Sbjct: 50 INNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSL 109
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+GFV + + A AI LNG + K I V + + S S + + NL++ L
Sbjct: 110 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPK 163
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
+T++ L + FS++G+I + I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 164 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 128 TLNGLRLQTKTIKVSYAR 145
Score = 135 (52.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T+E L F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 128 TLNGLRLQTKTIKVSYAR 145
Score = 126 (49.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 252 NGSVIGSKVLYAARAQK 268
NG +G +VL + K
Sbjct: 368 NGYRLGDRVLQVFKTNK 384
Score = 110 (43.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+ +N+YV + +T +EL+ FSQ G I +++++ D+ GI++G GF+ F EA +A
Sbjct: 152 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 211
Query: 351 VNTFHG 356
+ +G
Sbjct: 212 IKGLNG 217
Score = 106 (42.4 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 355 HGYMLHRKPLYV 366
+GY L + L V
Sbjct: 368 NGYRLGDRVLQV 379
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 218 (81.8 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 39 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 98
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 99 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 156
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 157 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Score = 203 (76.5 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 105 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 158
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 159 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Score = 147 (56.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 44 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 101
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 102 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 146
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 147 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Score = 136 (52.9 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 44 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 103
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 104 TLNGLRLQTKTIKVSYAR 121
Score = 125 (49.1 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + KA +
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHK 350
Score = 105 (42.0 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 330 NGYRLGDRVLQVSFKTNK 347
Score = 98 (39.6 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 330 NGYRLGDRVLQV 341
Score = 85 (35.0 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 122 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 181
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 182 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 220
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 222 (83.2 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 50/157 (31%), Positives = 87/157 (55%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 62 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 179
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 180 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 208 (78.3 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 55/174 (31%), Positives = 92/174 (52%)
Query: 85 ISWSCRDP-DA--RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSK 140
I+ +C P D+ + NL V L +++ L+ +F + G I SCK+ + G+S
Sbjct: 49 INNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSL 108
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+GFV + + A AI LNG + K I V + + S S + + NL++ L
Sbjct: 109 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPK 162
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
+T++ L + FS++G+I + I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 163 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 127 TLNGLRLQTKTIKVSYAR 144
Score = 135 (52.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T+E L F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 127 TLNGLRLQTKTIKVSYAR 144
Score = 124 (48.7 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
Score = 110 (43.8 bits), Expect = 8.6e-23, Sum P(2) = 8.6e-23
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 366 NGYRLGDRVLQVSFKTNK 383
Score = 110 (43.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+ +N+YV + +T +EL+ FSQ G I +++++ D+ GI++G GF+ F EA +A
Sbjct: 151 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 210
Query: 351 VNTFHG 356
+ +G
Sbjct: 211 IKGLNG 216
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 222 (83.2 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 50/157 (31%), Positives = 87/157 (55%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 63 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 180
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 181 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 208 (78.3 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 55/174 (31%), Positives = 92/174 (52%)
Query: 85 ISWSCRDP-DA--RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSK 140
I+ +C P D+ + NL V L +++ L+ +F + G I SCK+ + G+S
Sbjct: 50 INNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSL 109
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+GFV + + A AI LNG + K I V + + S S + + NL++ L
Sbjct: 110 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPK 163
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
+T++ L + FS++G+I + I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 164 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 128 TLNGLRLQTKTIKVSYAR 145
Score = 135 (52.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T+E L F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 128 TLNGLRLQTKTIKVSYAR 145
Score = 124 (48.7 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 110 (43.8 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 367 NGYRLGDRVLQVSFKTNK 384
Score = 110 (43.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+ +N+YV + +T +EL+ FSQ G I +++++ D+ GI++G GF+ F EA +A
Sbjct: 152 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 211
Query: 351 VNTFHG 356
+ +G
Sbjct: 212 IKGLNG 217
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 218 (81.8 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 41 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 100
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 101 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 158
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 159 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 203 (76.5 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 107 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 147 (56.8 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 103
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 104 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 148
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 149 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 136 (52.9 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
Score = 125 (49.1 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + KA +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 105 (42.0 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
Score = 98 (39.6 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 345 NGYRLGDRVLQV 356
Score = 85 (35.0 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 124 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 183
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 184 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 222
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 218 (81.8 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 41 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 100
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 101 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 158
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 159 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 203 (76.5 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 107 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 147 (56.8 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 103
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 104 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 148
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 149 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 136 (52.9 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
Score = 125 (49.1 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + KA +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 105 (42.0 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
Score = 98 (39.6 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 345 NGYRLGDRVLQV 356
Score = 85 (35.0 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 124 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 183
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 184 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 222
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 218 (81.8 bits), Expect = 4.8e-24, Sum P(2) = 4.8e-24
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 46 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 105
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 106 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 163
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 164 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 203 (76.5 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 112 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 147 (56.8 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 108
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 109 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 153
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 154 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 136 (52.9 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
Score = 125 (49.1 bits), Expect = 4.8e-24, Sum P(2) = 4.8e-24
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + KA +
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHK 370
Score = 105 (42.0 bits), Expect = 5.9e-22, Sum P(2) = 5.9e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 350 NGYRLGDRVLQVSFKTNK 367
Score = 98 (39.6 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 350 NGYRLGDRVLQV 361
Score = 85 (35.0 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 129 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 188
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 189 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 227
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 218 (81.8 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 34 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 203 (76.5 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 100 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 147 (56.8 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 96
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 97 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 141
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 136 (52.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 125 (49.1 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + KA +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 105 (42.0 bits), Expect = 6.3e-22, Sum P(2) = 6.3e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 352 NGYRLGDRVLQVSFKTNK 369
Score = 98 (39.6 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 352 NGYRLGDRVLQV 363
Score = 85 (35.0 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 177 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 215
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 218 (81.8 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 34 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 203 (76.5 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 100 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 147 (56.8 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 96
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 97 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 141
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 136 (52.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 125 (49.1 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + KA +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 105 (42.0 bits), Expect = 6.3e-22, Sum P(2) = 6.3e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 352 NGYRLGDRVLQVSFKTNK 369
Score = 98 (39.6 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 352 NGYRLGDRVLQV 363
Score = 85 (35.0 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 177 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 215
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 302 (111.4 bits), Expect = 5.9e-24, P = 5.9e-24
Identities = 96/350 (27%), Positives = 175/350 (50%)
Query: 9 TTPASLYVGDLHPDVTDGE--LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TTP +L++G+L+ V + + + D F++ LA+V D TG + +GYV+F S D
Sbjct: 164 TTPFNLFIGNLNKSVAELKVAISDLFAK-NDLAAV----DVRTGTNRKFGYVDFESAEDL 218
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGN 125
+A+E+ ++ G +++ + D++K A L KNL +I L+E+F++
Sbjct: 219 EKALELTG-LKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED--- 273
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDRV 182
+ ++ S+DG+SKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 274 AVEIRLV-SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERT 332
Query: 183 LPSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
+ + + L + NL TEE L E F K + + ++ +G S+G+ F+ F +
Sbjct: 333 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFAS 389
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+DA+ AL + N I + + R + + R R + ++VK
Sbjct: 390 FEDAKEALNSCNKMEIEGRTI---RLELQGPRGS------PNARSQ-----PSKTLFVKG 435
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+ +D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 436 LSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKTA 483
Score = 253 (94.1 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 78/259 (30%), Positives = 132/259 (50%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + +V + S GRS Y+ F S DA + +E
Sbjct: 252 TLLAKNLSFNITEDELKEVFED-----AVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEE 306
Query: 73 KNHTQLHGKMLRISWSCRDPDARK--------SGVAN-LFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ ++ SG + L + NL S LQE+F+
Sbjct: 307 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 366
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV + GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 367 TFI---KVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTI---RLELQGPRGS 420
Query: 184 PSPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +
Sbjct: 421 PNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEE 478
Query: 243 DARRALEAM-NGSVIGSKV 260
DA+ A EAM +G + G+KV
Sbjct: 479 DAKTAKEAMEDGEIDGNKV 497
Score = 147 (56.8 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 44/161 (27%), Positives = 79/161 (49%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L KNL ++TE+ L E F +I L+++D G S+G ++ F + DA + LE
Sbjct: 253 LLAKNLSFNITEDELKEVFEDAVEIR--LVSQD--GRSKGIAYIEFKSEADAEKNLEEKQ 308
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ I + + +K +R+ E K + + + N+ T+E L+
Sbjct: 309 GAEIDGRSVSLYYTGEKGQRQ-------ERTGKNSTWSGESKTLVLSNLSYSATEETLQE 361
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + T KV ++ G +KG+ F+ F+S E+A +A+N+
Sbjct: 362 VFEKA---TFIKVPQNPHGKSKGYAFIEFASFEDAKEALNS 399
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 218 (81.8 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 41 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 100
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 101 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 158
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 159 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 203 (76.5 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 107 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 147 (56.8 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 103
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 104 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 148
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 149 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 136 (52.9 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
Score = 125 (49.1 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + KA +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 105 (42.0 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 359 NGYRLGDRVLQVSFKTNK 376
Score = 98 (39.6 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 359 NGYRLGDRVLQV 370
Score = 85 (35.0 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 124 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 183
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 184 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 222
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 218 (81.8 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 41 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 100
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 101 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 158
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 159 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 203 (76.5 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 107 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 147 (56.8 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 103
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 104 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 148
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 149 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 136 (52.9 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 106 TLNGLRLQTKTIKVSYAR 123
Score = 125 (49.1 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + KA +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 105 (42.0 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 359 NGYRLGDRVLQVSFKTNK 376
Score = 98 (39.6 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 359 NGYRLGDRVLQV 370
Score = 85 (35.0 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 124 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 183
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 184 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 222
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 218 (81.8 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 57 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 116
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 117 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 174
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 175 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Score = 203 (76.5 bits), Expect = 4.9e-20, Sum P(2) = 4.9e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 123 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 176
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 177 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Score = 147 (56.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 62 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 119
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 120 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 164
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 165 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Score = 136 (52.9 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 62 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 121
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 122 TLNGLRLQTKTIKVSYAR 139
Score = 125 (49.1 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + KA +
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHK 381
Score = 105 (42.0 bits), Expect = 7.8e-22, Sum P(2) = 7.8e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 361 NGYRLGDRVLQVSFKTNK 378
Score = 98 (39.6 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 361 NGYRLGDRVLQV 372
Score = 85 (35.0 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 140 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 199
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 200 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 238
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 218 (81.8 bits), Expect = 6.6e-24, Sum P(2) = 6.6e-24
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 45 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 104
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 105 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 162
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 163 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Score = 203 (76.5 bits), Expect = 5.1e-20, Sum P(2) = 5.1e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 111 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 164
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 165 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Score = 147 (56.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 50 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 107
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 108 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 152
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 153 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Score = 136 (52.9 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 50 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 109
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 110 TLNGLRLQTKTIKVSYAR 127
Score = 125 (49.1 bits), Expect = 6.6e-24, Sum P(2) = 6.6e-24
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + KA +
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHK 383
Score = 105 (42.0 bits), Expect = 8.1e-22, Sum P(2) = 8.1e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 363 NGYRLGDRVLQVSFKTNK 380
Score = 98 (39.6 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 363 NGYRLGDRVLQV 374
Score = 85 (35.0 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 128 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 187
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 188 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 226
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 218 (81.8 bits), Expect = 6.8e-24, Sum P(2) = 6.8e-24
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 46 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 105
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 106 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 163
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 164 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 203 (76.5 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 112 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 147 (56.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 108
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 109 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 153
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 154 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 136 (52.9 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
Score = 125 (49.1 bits), Expect = 6.8e-24, Sum P(2) = 6.8e-24
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + KA +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 105 (42.0 bits), Expect = 8.3e-22, Sum P(2) = 8.3e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 364 NGYRLGDRVLQVSFKTNK 381
Score = 98 (39.6 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 364 NGYRLGDRVLQV 375
Score = 85 (35.0 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 129 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 188
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 189 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 227
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 218 (81.8 bits), Expect = 6.8e-24, Sum P(2) = 6.8e-24
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 46 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 105
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 106 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 163
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 164 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 203 (76.5 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 112 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 147 (56.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 108
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 109 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 153
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 154 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 136 (52.9 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
Score = 125 (49.1 bits), Expect = 6.8e-24, Sum P(2) = 6.8e-24
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + KA +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 105 (42.0 bits), Expect = 8.3e-22, Sum P(2) = 8.3e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 364 NGYRLGDRVLQVSFKTNK 381
Score = 98 (39.6 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 364 NGYRLGDRVLQV 375
Score = 85 (35.0 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 129 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 188
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++KS A L
Sbjct: 189 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 227
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 215 (80.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L L ++T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 34 TEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 200 (75.5 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 53/171 (30%), Positives = 89/171 (52%)
Query: 88 SCRDP-DA--RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHG 143
+C P D+ + NL L +++ L+ +F + G I SCK+ + G+S G+G
Sbjct: 24 NCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 144 FVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVT 203
FV + + A AI LNG + K I V + + S S + + NL++ L +T
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMT 137
Query: 204 EEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
++ L + FS++G+I + I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 136 (52.9 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ + ++T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL L ++T+E L F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 124 (48.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 110 (43.8 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
Score = 110 (43.8 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+ +N+YV + +T +EL+ FSQ G I +++++ D+ GI++G GF+ F EA +A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 351 VNTFHG 356
+ +G
Sbjct: 183 IKGLNG 188
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 215 (80.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L L ++T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 34 TEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 200 (75.5 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 53/171 (30%), Positives = 89/171 (52%)
Query: 88 SCRDP-DA--RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHG 143
+C P D+ + NL L +++ L+ +F + G I SCK+ + G+S G+G
Sbjct: 24 NCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 144 FVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVT 203
FV + + A AI LNG + K I V + + S S + + NL++ L +T
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMT 137
Query: 204 EEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
++ L + FS++G+I + I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 136 (52.9 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ + ++T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL L ++T+E L F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 124 (48.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 110 (43.8 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
Score = 110 (43.8 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+ +N+YV + +T +EL+ FSQ G I +++++ D+ GI++G GF+ F EA +A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 351 VNTFHG 356
+ +G
Sbjct: 183 IKGLNG 188
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 209 (78.6 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 47/151 (31%), Positives = 80/151 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T EL FS + S ++ +D G S YG+VN+++ DA RAI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ + K ANL++ L ++ +++MF FG II+ +V
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKD--ANLYISGLPRNMTQKDVEDMFSRFGRIINSRVL 138
Query: 133 TSED-GKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G F++F+ A AI + NG
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 208 (78.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 89 CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQF 147
CRD R NL V L +++ L+ +F + G + S K+ + G S G+GFV +
Sbjct: 13 CRDDIGR----TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHL 207
T + A AI LNG + K I V + + S V+ K NL++ L ++T++ +
Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVS-YARPSSEVI-----KDANLYISGLPRNMTQKDV 122
Query: 208 VEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNG 253
+ FS+FG+I + + D+ G SRG F+ FD +A A+ + NG
Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 148 (57.2 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 46/174 (26%), Positives = 86/174 (49%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T++ L FS G++ S + RD+ G+ F N A+ A A
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYVTAKDAERA 77
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + E I K +N+Y+ + ++T +++
Sbjct: 78 IN-------TLNGLRLQSKT-----IKVSYARPSSEVI---KDANLYISGLPRNMTQKDV 122
Query: 311 KAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ FS+ G I +++V+ D+ G+++G F+ F EA +A+ +F+G H+ P
Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPP 173
Score = 135 (52.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 29/91 (31%), Positives = 57/91 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +EL++ FS G + SAK++RD+ G + G+GFV + + ++A +A+N
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 353 TFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
T +G L K + V+ A+ + + A+L +
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYI 110
Score = 126 (49.4 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNP 241
+P A+ +F+ NL D E L + F FG + ++ + RD N +GFGFV N
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAER 272
++A A+ ++NG +G K+L + K+ +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 115 (45.5 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
+++ N+ D + L F G +T+ KV+RD KGFGFV ++ EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 113 (44.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 33/91 (36%), Positives = 43/91 (47%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETE 150
P SG +F+ NL + D L +MF FG + + KV K KG GFV
Sbjct: 237 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
E A AI +LNG +GDK + V KS +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 82 (33.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
A+LY+ L ++T ++ D FS F + + RV D TTG S ++ F +A AI
Sbjct: 106 ANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 209 (78.6 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 47/151 (31%), Positives = 80/151 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T EL FS + S ++ +D G S YG+VN+++ DA RAI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ + K ANL++ L ++ +++MF FG II+ +V
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138
Query: 133 TSED-GKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G F++F+ A AI + NG
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 203 (76.5 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 50/158 (31%), Positives = 82/158 (51%)
Query: 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAA 156
G NL V L +++ L+ +F + G + S K+ + G S G+GFV + T + A A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGK 216
I LNG + K I V + + S V+ K NL++ L +T++ + + FS+FG+
Sbjct: 78 INTLNGLRLQSKTIKVS-YARPSSEVI-----KDANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 217 IASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNG 253
I + + D+ G SRG F+ FD +A A+ + NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 146 (56.5 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 46/174 (26%), Positives = 85/174 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T++ L FS G++ S + RD+ G+ F N A+ A A
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYVTAKDAERA 77
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + E I K +N+Y+ + +T +++
Sbjct: 78 IN-------TLNGLRLQSKT-----IKVSYARPSSEVI---KDANLYISGLPRTMTQKDV 122
Query: 311 KAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ FS+ G I +++V+ D+ G+++G F+ F EA +A+ +F+G H+ P
Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPP 173
Score = 135 (52.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 29/91 (31%), Positives = 57/91 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +EL++ FS G + SAK++RD+ G + G+GFV + + ++A +A+N
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 353 TFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
T +G L K + V+ A+ + + A+L +
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYI 110
Score = 126 (49.4 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNP 241
+P A+ +F+ NL D E L + F FG + ++ + RD N +GFGFV N
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAER 272
++A A+ ++NG +G K+L + K+ +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 115 (45.5 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
+++ N+ D + L F G +T+ KV+RD KGFGFV ++ EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 113 (44.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 33/91 (36%), Positives = 43/91 (47%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETE 150
P SG +F+ NL + D L +MF FG + + KV K KG GFV
Sbjct: 237 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
E A AI +LNG +GDK + V KS +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 80 (33.2 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
A+LY+ L +T ++ D FS F + + RV D TTG S ++ F +A AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 302 (111.4 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 101/349 (28%), Positives = 169/349 (48%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TT +L+VG+L+ + + EL S+ + + V D G S +GYV+F S D +
Sbjct: 314 TTSFNLFVGNLNFNKSAPELKTGISDLFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEK 372
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNII 127
A+E+ ++ G +++ + D++K A L KNL + L+E+F++ +
Sbjct: 373 ALELTG-LKVFGNEIKLE-KPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFED---AV 427
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDR--- 181
++ S+DGKSKG +++F+TE A +E GT + + I Y G + D
Sbjct: 428 EIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGG 486
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + + L + NL TEE L E F K I + +++NG S+G+ F+ F +
Sbjct: 487 KNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHIK---VPQNQNGKSKGYAFIEFASF 543
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA+ AL + N I + A R + + R R + ++VK +
Sbjct: 544 EDAKEALNSCNKREIEGR---AIRLELQGPRGS------PNARSQ-----PSKTLFVKGL 589
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+D T+E LK F G+I + V E G +KGFGFV F+S E+A A
Sbjct: 590 SEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDAKAA 636
Score = 264 (98.0 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 83/261 (31%), Positives = 136/261 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVR-VCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L +L VT EL + F + +R V KD G+S Y+ F + DA + +E
Sbjct: 404 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 457
Query: 72 VKNHTQLHGKMLRISWS-----CRDPDARK----SGVAN-LFVKNLIESIDNVRLQEMFQ 121
K T++ G+ + + ++ +D K SG + L + NL S LQE+F+
Sbjct: 458 EKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 517
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+I KV +++GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 518 KATHI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPR 571
Query: 182 VLPSPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
P+ ++ + LF+K L D TEE L E F G I + ++ E G+S+GFGFV+F++
Sbjct: 572 GSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 629
Query: 241 PDDARRALEAM-NGSVIGSKV 260
+DA+ A EAM +G + G+KV
Sbjct: 630 EEDAKAAKEAMEDGEIDGNKV 650
Score = 142 (55.0 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 43/161 (26%), Positives = 78/161 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L KNL VT++ L E F +I L+++D G S+G ++ F DA + LE
Sbjct: 405 LLAKNLPYKVTQDELKEVFEDAVEIR--LVSKD--GKSKGIAYIEFKTEADAEKTLEEKQ 460
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ I + + +K + + H+ K + + + N+ T+E L+
Sbjct: 461 GTEIDGRSISLYYTGEKGQSQD---HR---GGKNSTWSGESKTLVLSNLSYSATEETLQE 514
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + T KV +++ G +KG+ F+ F+S E+A +A+N+
Sbjct: 515 VFEKA---THIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 552
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 218 (81.8 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 46 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 105
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 106 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 163
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 164 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 203 (76.5 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 112 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 147 (56.8 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 46/167 (27%), Positives = 81/167 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E F G+I S + RD+ T + G+ F N D + A +A
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGY-GFVNYIDPKDAEKA 108
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 109 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 153
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 154 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 136 (52.9 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 111 TLNGLRLQTKTIKVSYAR 128
Score = 121 (47.7 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHK 370
Score = 105 (42.0 bits), Expect = 5.9e-22, Sum P(2) = 5.9e-22
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 350 NGYRLGDRVLQVSFKTNK 367
Score = 98 (39.6 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 350 NGYRLGDRVLQV 361
Score = 82 (33.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 129 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 188
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++K+ A L
Sbjct: 189 IEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQALL 227
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 220 (82.5 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 48/152 (31%), Positives = 88/152 (57%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L + L +T E+ F+ + S ++ +D TG+S YG+VN++ DA+RA+
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ D K +NL+V + +S+ L+ +F+ FG II+ ++
Sbjct: 103 FNGLRLQNKTIKVSYARPSNDQIKG--SNLYVSGIPKSMTLHELESIFRPFGQIITSRIL 160
Query: 133 TSE-DGKSKGHGFVQFETEESANAAIENLNGT 163
+ G SKG GFV+F+ ++ A+ AI+ LNG+
Sbjct: 161 SDNVTGLSKGVGFVRFDKKDEADVAIKTLNGS 192
Score = 207 (77.9 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 50/157 (31%), Positives = 82/157 (52%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL + L + + ++ +F + G I SCK+ + G+S G+GFV + EE A A+ +
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
NG + +K I V +D++ K +NL++ + +T L F FG+I +
Sbjct: 103 FNGLRLQNKTIKVSYARPSNDQI------KGSNLYVSGIPKSMTLHELESIFRPFGQIIT 156
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSV 255
I D G S+G GFV FD D+A A++ +NGS+
Sbjct: 157 SRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
Score = 156 (60.0 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 51/167 (30%), Positives = 82/167 (49%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L +T+E + F+ G+I S + RD+ T + G+ F N AL A
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKV-TGQSLGY-GFVNYVREEDALRA 99
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++ S G R Q K ++ + ++I KGSN+YV I +T EL
Sbjct: 100 VS-SFNG------LRLQNKT-----IKVSYARPSNDQI---KGSNLYVSGIPKSMTLHEL 144
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
++ F G I +++++ D G++KG GFV F +EA A+ T +G
Sbjct: 145 ESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 129 (50.5 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 27/83 (32%), Positives = 51/83 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ + + +T EE+++ F+ G I S K++RD+ G + G+GFV + E+A +AV+
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVS 101
Query: 353 TFHGYMLHRKPLYVAIAQRKEDR 375
+F+G L K + V+ A+ D+
Sbjct: 102 SFNGLRLQNKTIKVSYARPSNDQ 124
Score = 124 (48.7 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
PS A Y LF+ NL SD + L + FS+FG I ++ I RD +G+ FV+ N +
Sbjct: 368 PSDTAGYC-LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTE 426
Query: 244 ARRALEAMNGSVIGSKVL 261
A A+ ++NG+ + K L
Sbjct: 427 AYNAMLSLNGTNLAGKTL 444
Score = 111 (44.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 31/98 (31%), Positives = 46/98 (46%)
Query: 75 HTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS 134
H QL L S + P + +G LFV NL D+ L ++F FG I++ K+
Sbjct: 352 HAQLSA--LSASVAATLPPSDTAGYC-LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD 408
Query: 135 EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV 172
+ KG+ FV A A+ +LNGT + K + V
Sbjct: 409 LTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 100 (40.3 bits), Expect = 5.1e-21, Sum P(2) = 5.1e-21
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVN 352
G ++V N+ D D L FSQ G I + K++RD KG+ FV S+ EA A+
Sbjct: 373 GYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAML 432
Query: 353 TFHGYMLHRKPLYV 366
+ +G L K L V
Sbjct: 433 SLNGTNLAGKTLQV 446
Score = 76 (31.8 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++LYV + +T EL F F + + R+ D+ TG S G+V F +A AI+
Sbjct: 128 SNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIK 187
Query: 72 VKN 74
N
Sbjct: 188 TLN 190
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 210 (79.0 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 57/184 (30%), Positives = 93/184 (50%)
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+KN T +G ++ CRD R NL V L +++ L+ +F + G + S K+
Sbjct: 5 LKN-TMSNGYEDHMAEDCRDDIGR----TNLIVNYLPQNMTQDELRSLFSSIGEVESAKL 59
Query: 132 ATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY 190
+ G S G+GFV + T + A AI LNG + K I V + + S V+ K
Sbjct: 60 IRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS-YARPSSEVI-----KD 113
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALE 249
NL++ L +T++ + + FS+FG+I + + D+ G SRG F+ FD +A A+
Sbjct: 114 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 173
Query: 250 AMNG 253
+ NG
Sbjct: 174 SFNG 177
Score = 209 (78.6 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 47/151 (31%), Positives = 80/151 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T EL FS + S ++ +D G S YG+VN+++ DA RAI
Sbjct: 29 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 88
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ + K ANL++ L ++ +++MF FG II+ +V
Sbjct: 89 LNGLRLQSKTIKVSYARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 146
Query: 133 TSED-GKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G F++F+ A AI + NG
Sbjct: 147 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 177
Score = 146 (56.5 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 46/174 (26%), Positives = 85/174 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T++ L FS G++ S + RD+ G+ F N A+ A A
Sbjct: 28 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYVTAKDAERA 85
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + E I K +N+Y+ + +T +++
Sbjct: 86 IN-------TLNGLRLQSKT-----IKVSYARPSSEVI---KDANLYISGLPRTMTQKDV 130
Query: 311 KAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ FS+ G I +++V+ D+ G+++G F+ F EA +A+ +F+G H+ P
Sbjct: 131 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPP 181
Score = 135 (52.6 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 29/91 (31%), Positives = 57/91 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +EL++ FS G + SAK++RD+ G + G+GFV + + ++A +A+N
Sbjct: 28 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 87
Query: 353 TFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
T +G L K + V+ A+ + + A+L +
Sbjct: 88 TLNGLRLQSKTIKVSYARPSSEVIKDANLYI 118
Score = 126 (49.4 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNP 241
+P A+ +F+ NL D E L + F FG + ++ + RD N +GFGFV N
Sbjct: 244 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 303
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAER 272
++A A+ ++NG +G K+L + K+ +
Sbjct: 304 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 334
Score = 115 (45.5 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
+++ N+ D + L F G +T+ KV+RD KGFGFV ++ EEA+ A+ +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V+ K +
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
Score = 113 (44.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 33/91 (36%), Positives = 43/91 (47%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETE 150
P SG +F+ NL + D L +MF FG + + KV K KG GFV
Sbjct: 245 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 303
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
E A AI +LNG +GDK + V KS +
Sbjct: 304 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 334
Score = 80 (33.2 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
A+LY+ L +T ++ D FS F + + RV D TTG S ++ F +A AI
Sbjct: 114 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 172
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 208 (78.3 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 47/151 (31%), Positives = 80/151 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T EL FS + S ++ +D G S YG+VN+++ DA RAI
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ + K ANL++ L ++ +++MF FG II+ +V
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138
Query: 133 TSED-GKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G F++F+ A AI + NG
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 207 (77.9 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 53/167 (31%), Positives = 85/167 (50%)
Query: 89 CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQF 147
CRD R NL V L +++ L+ +F + G + S K+ + G S G+GFV +
Sbjct: 13 CRDDIGR----TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHL 207
T + A AI LNG + K I V + + S V+ K NL++ L +T++ +
Sbjct: 69 VTAKDAERAISTLNGLRLQSKTIKVS-YARPSSEVI-----KDANLYISGLPRTMTQKDV 122
Query: 208 VEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNG 253
+ FS+FG+I + + D+ G SRG F+ FD +A A+ + NG
Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 144 (55.7 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 46/174 (26%), Positives = 85/174 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E L FS G++ S + RD+ G+ F N A+ A A
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYVTAKDAERA 77
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++ L R Q K ++ + E I K +N+Y+ + +T +++
Sbjct: 78 IS-------TLNGLRLQSKT-----IKVSYARPSSEVI---KDANLYISGLPRTMTQKDV 122
Query: 311 KAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ FS+ G I +++V+ D+ G+++G F+ F EA +A+ +F+G H+ P
Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPP 173
Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/91 (31%), Positives = 57/91 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EEL++ FS G + SAK++RD+ G + G+GFV + + ++A +A++
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 353 TFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
T +G L K + V+ A+ + + A+L +
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYI 110
Score = 126 (49.4 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNP 241
+P A+ +F+ NL D E L + F FG + ++ + RD N +GFGFV N
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAER 272
++A A+ ++NG +G K+L + K+ +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 115 (45.5 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
+++ N+ D + L F G +T+ KV+RD KGFGFV ++ EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 113 (44.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 33/91 (36%), Positives = 43/91 (47%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETE 150
P SG +F+ NL + D L +MF FG + + KV K KG GFV
Sbjct: 237 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
E A AI +LNG +GDK + V KS +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 80 (33.2 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
A+LY+ L +T ++ D FS F + + RV D TTG S ++ F +A AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 208 (78.3 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 47/151 (31%), Positives = 80/151 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T EL FS + S ++ +D G S YG+VN+++ DA RAI
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ + K ANL++ L ++ +++MF FG II+ +V
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138
Query: 133 TSED-GKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G F++F+ A AI + NG
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 207 (77.9 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 53/167 (31%), Positives = 85/167 (50%)
Query: 89 CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQF 147
CRD R NL V L +++ L+ +F + G + S K+ + G S G+GFV +
Sbjct: 13 CRDDIGR----TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHL 207
T + A AI LNG + K I V + + S V+ K NL++ L +T++ +
Sbjct: 69 VTAKDAERAISTLNGLRLQSKTIKVS-YARPSSEVI-----KDANLYISGLPRTMTQKDV 122
Query: 208 VEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNG 253
+ FS+FG+I + + D+ G SRG F+ FD +A A+ + NG
Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 144 (55.7 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 46/174 (26%), Positives = 85/174 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E L FS G++ S + RD+ G+ F N A+ A A
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYVTAKDAERA 77
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++ L R Q K ++ + E I K +N+Y+ + +T +++
Sbjct: 78 IS-------TLNGLRLQSKT-----IKVSYARPSSEVI---KDANLYISGLPRTMTQKDV 122
Query: 311 KAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ FS+ G I +++V+ D+ G+++G F+ F EA +A+ +F+G H+ P
Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPP 173
Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/91 (31%), Positives = 57/91 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EEL++ FS G + SAK++RD+ G + G+GFV + + ++A +A++
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 353 TFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
T +G L K + V+ A+ + + A+L +
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYI 110
Score = 126 (49.4 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNP 241
+P A+ +F+ NL D E L + F FG + ++ + RD N +GFGFV N
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAER 272
++A A+ ++NG +G K+L + K+ +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 115 (45.5 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
+++ N+ D + L F G +T+ KV+RD KGFGFV ++ EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 113 (44.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 33/91 (36%), Positives = 43/91 (47%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETE 150
P SG +F+ NL + D L +MF FG + + KV K KG GFV
Sbjct: 237 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
E A AI +LNG +GDK + V KS +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 80 (33.2 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
A+LY+ L +T ++ D FS F + + RV D TTG S ++ F +A AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 215 (80.7 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 48/158 (30%), Positives = 87/158 (55%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN++ P+DA
Sbjct: 33 TDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDA 92
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ ++++F +G I
Sbjct: 93 DKAINTLNGLKLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRI 150
Query: 127 ISCKVATSE--DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 151 ITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNG 188
Score = 196 (74.1 bits), Expect = 8.3e-20, Sum P(2) = 8.3e-20
Identities = 48/156 (30%), Positives = 84/156 (53%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G I SCK+ + G+S G+GFV + A+ AI
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L ++++ + + FS++G+I +
Sbjct: 99 LNGLKLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIIT 152
Query: 220 LLIARDE--NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD ++A A++ +NG
Sbjct: 153 SRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNG 188
Score = 138 (53.6 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE K+ F G I S K++RD+ G + G+GFV + P +A KA+N
Sbjct: 38 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 97
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 98 TLNGLKLQTKTIKVSYAR 115
Score = 138 (53.6 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 45/167 (26%), Positives = 80/167 (47%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T+E F G+I S + RD+ G S G+GFVN+ +P+DA +A+
Sbjct: 38 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 97
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG + +K + + A+ + +R + L G + D E+
Sbjct: 98 TLNGLKLQTKTIKVSYARPSSAS---IR--------DANLYVSGLPKTMSQKDM----EQ 142
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
L + + + T + V + GI++G GF+ F EA +A+ +G
Sbjct: 143 LFSQYGRIIT-SRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNG 188
Score = 122 (48.0 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 33/120 (27%), Positives = 55/120 (45%)
Query: 157 IENLNGTTVGDKR---IYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSK 213
++NL + G KR I + + L P +F+ NL + E L + F
Sbjct: 239 LDNLLNASYGVKRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFGP 298
Query: 214 FGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FG + ++ + RD +GFGFV N D+A A+ ++NG +G +VL + K +
Sbjct: 299 FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKQHK 358
Score = 109 (43.4 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ + + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L + L V+ K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTSKQHK 358
Score = 100 (40.3 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 72 (30.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/100 (26%), Positives = 49/100 (49%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTT-GRSTCYGYVNFLS 62
P +A+ A+LYV L ++ ++ FS++ + + R+ D T G S G++ F
Sbjct: 116 PSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDK 175
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
++A AI+ N + G I+ + ++K+G A L
Sbjct: 176 RNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALL 215
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 300 (110.7 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 103/346 (29%), Positives = 171/346 (49%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SL++G+L+ + EL A S+F S + + +D G + +GYV+F S + +A+E+
Sbjct: 291 SLFLGNLNNNKDFDELKSAISKFFSKEGLEI-QDVRLGGTKKFGYVDFASEEELQKALEL 349
Query: 73 KNHTQLHGKMLRI----SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
N +L G+ +++ S + ++ LFVKNL SI L+E+F +
Sbjct: 350 -NGKKLLGQPVKLDKARSKENSQENKKERDARTLFVKNLPYSITQDDLREIFDQ---AVD 405
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV---GRFIKKSDRVLPS 185
+V G S+G +++F+TE A A+E G+ V + I V G ++ R PS
Sbjct: 406 IRVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQGGRGAPS 465
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A+K L + NL +E+ L S F K S+ I ++ NG +G+ FV F+N +D++
Sbjct: 466 -ASKV--LVVNNLAFSASEDSLQ---SVFEKAVSIRIPQN-NGRPKGYAFVEFENVEDSK 518
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
ALE N + I + + +Q ER R + ++VK + DD
Sbjct: 519 EALENCNNTDIEGRSIRLEYSQNDRERGGGGRGNSGPTK----------TLFVKGLSDDT 568
Query: 306 TDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKA 350
TD+ LK F G I +A++ D + G +KGFGFV F + ++ A
Sbjct: 569 TDQTLKDSFD--GAI-AARIATDRDTGSSKGFGFVDFDNEQDCKAA 611
Score = 237 (88.5 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 74/257 (28%), Positives = 126/257 (49%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L+V +L +T +L + F + +RV +T G S Y+ F + A +A+E
Sbjct: 381 TLFVKNLPYSITQDDLREIFDQ---AVDIRVPMGNT-GTSRGIAYIEFKTEAIAEKALEE 436
Query: 73 KNHTQLHGKMLRISW----SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
+ + G+ + + + S + S L V NL S LQ +F+ +S
Sbjct: 437 AQGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSVFEK---AVS 493
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP-- 186
++ + +G+ KG+ FV+FE E + A+EN N T + + I + ++DR
Sbjct: 494 IRIPQN-NGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLE--YSQNDRERGGGGR 550
Query: 187 --AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+ LF+K L D T++ L + F G IA+ + + G+S+GFGFV+FDN D
Sbjct: 551 GNSGPTKTLFVKGLSDDTTDQTLKDSFD--GAIAARIATDRDTGSSKGFGFVDFDNEQDC 608
Query: 245 RRALEAMN-GSVIGSKV 260
+ A EAM+ G + G+KV
Sbjct: 609 KAAKEAMDDGEIDGNKV 625
Score = 132 (51.5 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 49/184 (26%), Positives = 87/184 (47%)
Query: 177 KKSDRVLPSPAAKYT----NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRG 232
KK P+ AK +LF+ NL+++ + L SKF L I G ++
Sbjct: 272 KKEKGTPPAKKAKTDGEGFSLFLGNLNNNKDFDELKSAISKFFSKEGLEIQDVRLGGTKK 331
Query: 233 FGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYK 292
FG+V+F + ++ ++ALE +NG + + + +A+ K E Q E +KER +
Sbjct: 332 FGYVDFASEEELQKALE-LNGKKLLGQPVKLDKARSK-ENSQ-------ENKKERDAR-- 380
Query: 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVN 352
++VKN+ +T ++L+ F Q I +V G ++G ++ F + A KA+
Sbjct: 381 --TLFVKNLPYSITQDDLREIFDQAVDI---RVPMGNTGTSRGIAYIEFKTEAIAEKALE 435
Query: 353 TFHG 356
G
Sbjct: 436 EAQG 439
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 207 (77.9 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 47/151 (31%), Positives = 80/151 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T EL FS + S ++ +D G S YG+VN+++ DA RAI
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ + K ANL++ L ++ +++MF FG II+ +V
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSPFGRIINSRVL 138
Query: 133 TSED-GKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G F++F+ A AI + NG
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 205 (77.2 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 54/167 (32%), Positives = 84/167 (50%)
Query: 89 CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQF 147
CRD R NL V L +++ L+ +F + G I S K+ + G S G+GFV +
Sbjct: 13 CRDDIGR----TNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNY 68
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHL 207
T + A AI LNG + K I V + + S V+ K NL++ L +T++ +
Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVS-YARPSSEVI-----KDANLYISGLPRTMTQKDV 122
Query: 208 VEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNG 253
+ FS FG+I + + D+ G SRG F+ FD +A A+ + NG
Sbjct: 123 EDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 148 (57.2 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 48/174 (27%), Positives = 84/174 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E L FS G+I S + RD+ G+ F N A+ A A
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVA-GHSLGY-GFVNYVTAKDAERA 77
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + E I K +N+Y+ + +T +++
Sbjct: 78 IN-------TLNGLRLQSKT-----IKVSYARPSSEVI---KDANLYISGLPRTMTQKDV 122
Query: 311 KAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ FS G I +++V+ D+ G+++G F+ F EA +A+ +F+G H+ P
Sbjct: 123 EDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPP 173
Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 31/91 (34%), Positives = 57/91 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EEL++ FS G I SAK++RD+ G + G+GFV + + ++A +A+N
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 353 TFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
T +G L K + V+ A+ + + A+L +
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYI 110
Score = 126 (49.4 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNP 241
+P A+ +F+ NL D E L + F FG + ++ + RD N +GFGFV N
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAER 272
++A A+ ++NG +G K+L + K+ +
Sbjct: 296 EEASMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
+++ N+ D + L F G +T+ KV+RD KGFGFV ++ EEAS A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 116 (45.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 33/91 (36%), Positives = 44/91 (48%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETE 150
P SG +F+ NL + D L +MF FG + + KV K KG GFV
Sbjct: 237 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
E A+ AI +LNG +GDK + V KS +
Sbjct: 296 EEASMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 79 (32.9 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
A+LY+ L +T ++ D FS F + + RV D TTG S ++ F +A AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 214 (80.4 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 50/158 (31%), Positives = 87/158 (55%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTT-GRSTCYGYVNFLSPHD 65
T + +L V L ++T EL F + S ++ +D T G+S YG+VN++ P D
Sbjct: 61 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKD 120
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A +AI N +L K +++S++ R P + ANL+V L +++ L+++F +G
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 178
Query: 126 IISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
II+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 179 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 208 (78.3 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
Identities = 51/156 (32%), Positives = 85/156 (54%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE--DGKSKGHGFVQFETEESANAAIE 158
NL V L +++ L+ +F + G I SCK+ + +G+S G+GFV + + A AI
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN 126
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I
Sbjct: 127 TLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 180
Query: 219 SLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
+ I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 181 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 154 (59.3 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 50/191 (26%), Positives = 88/191 (46%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T+E L F G+I S + RD+ + G+ F N D + A +A
Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGY-GFVNYIDPKDAEKA 124
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + I + +N+YV + +T +EL
Sbjct: 125 IN-------TLNGLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 169
Query: 311 KAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLH--RKPLYVA 367
+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G +P+ V
Sbjct: 170 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVK 229
Query: 368 IAQRKEDRQAH 378
A + H
Sbjct: 230 FANNPSQKVNH 240
Score = 124 (48.7 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHK 388
Score = 109 (43.4 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 368 NGYRLGDRVLQVSFKTSK 385
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 209 (78.6 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 47/151 (31%), Positives = 80/151 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T EL FS + S ++ +D G S YG+VN+++ DA RAI
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 107
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ + K ANL++ L ++ +++MF FG II+ +V
Sbjct: 108 LNGLRLQSKTIKVSYARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 165
Query: 133 TSED-GKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G F++F+ A AI + NG
Sbjct: 166 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 203 (76.5 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 50/158 (31%), Positives = 82/158 (51%)
Query: 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAA 156
G NL V L +++ L+ +F + G + S K+ + G S G+GFV + T + A A
Sbjct: 45 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 104
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGK 216
I LNG + K I V + + S V+ K NL++ L +T++ + + FS+FG+
Sbjct: 105 INTLNGLRLQSKTIKVS-YARPSSEVI-----KDANLYISGLPRTMTQKDVEDMFSRFGR 158
Query: 217 IASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNG 253
I + + D+ G SRG F+ FD +A A+ + NG
Sbjct: 159 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 146 (56.5 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 46/174 (26%), Positives = 85/174 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T++ L FS G++ S + RD+ G+ F N A+ A A
Sbjct: 47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYVTAKDAERA 104
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ + E I K +N+Y+ + +T +++
Sbjct: 105 IN-------TLNGLRLQSKT-----IKVSYARPSSEVI---KDANLYISGLPRTMTQKDV 149
Query: 311 KAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ FS+ G I +++V+ D+ G+++G F+ F EA +A+ +F+G H+ P
Sbjct: 150 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPP 200
Score = 135 (52.6 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 29/91 (31%), Positives = 57/91 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +EL++ FS G + SAK++RD+ G + G+GFV + + ++A +A+N
Sbjct: 47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 106
Query: 353 TFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
T +G L K + V+ A+ + + A+L +
Sbjct: 107 TLNGLRLQSKTIKVSYARPSSEVIKDANLYI 137
Score = 126 (49.4 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNP 241
+P A+ +F+ NL D E L + F FG + ++ + RD N +GFGFV N
Sbjct: 263 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 322
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAER 272
++A A+ ++NG +G K+L + K+ +
Sbjct: 323 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 353
Score = 115 (45.5 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
+++ N+ D + L F G +T+ KV+RD KGFGFV ++ EEA+ A+ +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V+ K +
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
Score = 113 (44.8 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 33/91 (36%), Positives = 43/91 (47%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETE 150
P SG +F+ NL + D L +MF FG + + KV K KG GFV
Sbjct: 264 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 322
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
E A AI +LNG +GDK + V KS +
Sbjct: 323 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 353
Score = 80 (33.2 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
A+LY+ L +T ++ D FS F + + RV D TTG S ++ F +A AI
Sbjct: 133 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 191
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 296 (109.3 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 100/346 (28%), Positives = 167/346 (48%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TT +L+VG+L+ + + EL S+ + + V D G S +GYV+F S D +
Sbjct: 226 TTSFNLFVGNLNFNKSAPELKTGISDLFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEK 284
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNII 127
A+E+ ++ G +++ + D++K A L KNL + L+E+F++ +
Sbjct: 285 ALELTG-LKVFGNEIKLE-KPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFED---AV 339
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLP 184
++ S+DGKSKG +++F+TE A +E GT + Y G + D
Sbjct: 340 EIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEID----YTGEKGQSQDHRGGKNS 394
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+ + + L + NL TEE L E F K I + +++NG S+G+ F+ F + +DA
Sbjct: 395 TWSGESKTLVLSNLSYSATEETLQEVFEKATHIK---VPQNQNGKSKGYAFIEFASFEDA 451
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+ AL + N I + A R + + R R + ++VK + +D
Sbjct: 452 KEALNSCNKREIEGR---AIRLELQGPRGS------PNARSQ-----PSKTLFVKGLSED 497
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
T+E LK F G+I + V E G +KGFGFV F+S E+A A
Sbjct: 498 TTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDAKAA 541
Score = 256 (95.2 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 81/254 (31%), Positives = 132/254 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVR-VCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L +L VT EL + F + +R V KD G+S Y+ F + DA + +E
Sbjct: 316 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 369
Query: 72 VKNHTQLH--GKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNIIS 128
K T++ G+ + ++ SG + L + NL S LQE+F+ +I
Sbjct: 370 EKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHI-- 427
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
KV +++GKSKG+ F++F + E A A+ + N + + I R + R P+ +
Sbjct: 428 -KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPRGSPNARS 483
Query: 189 KYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
+ + LF+K L D TEE L E F G I + ++ E G+S+GFGFV+F++ +DA+ A
Sbjct: 484 QPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDAKAA 541
Query: 248 LEAM-NGSVIGSKV 260
EAM +G + G+KV
Sbjct: 542 KEAMEDGEIDGNKV 555
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 296 (109.3 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 100/346 (28%), Positives = 167/346 (48%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TT +L+VG+L+ + + EL S+ + + V D G S +GYV+F S D +
Sbjct: 231 TTSFNLFVGNLNFNKSAPELKTGISDLFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEK 289
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNII 127
A+E+ ++ G +++ + D++K A L KNL + L+E+F++ +
Sbjct: 290 ALELTG-LKVFGNEIKLE-KPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFED---AV 344
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLP 184
++ S+DGKSKG +++F+TE A +E GT + Y G + D
Sbjct: 345 EIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEID----YTGEKGQSQDHRGGKNS 399
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+ + + L + NL TEE L E F K I + +++NG S+G+ F+ F + +DA
Sbjct: 400 TWSGESKTLVLSNLSYSATEETLQEVFEKATHIK---VPQNQNGKSKGYAFIEFASFEDA 456
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+ AL + N I + A R + + R R + ++VK + +D
Sbjct: 457 KEALNSCNKREIEGR---AIRLELQGPRGS------PNARSQ-----PSKTLFVKGLSED 502
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
T+E LK F G+I + V E G +KGFGFV F+S E+A A
Sbjct: 503 TTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDAKAA 546
Score = 256 (95.2 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 81/254 (31%), Positives = 132/254 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVR-VCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L +L VT EL + F + +R V KD G+S Y+ F + DA + +E
Sbjct: 321 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 374
Query: 72 VKNHTQLH--GKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNIIS 128
K T++ G+ + ++ SG + L + NL S LQE+F+ +I
Sbjct: 375 EKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHI-- 432
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
KV +++GKSKG+ F++F + E A A+ + N + + I R + R P+ +
Sbjct: 433 -KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPRGSPNARS 488
Query: 189 KYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
+ + LF+K L D TEE L E F G I + ++ E G+S+GFGFV+F++ +DA+ A
Sbjct: 489 QPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDAKAA 546
Query: 248 LEAM-NGSVIGSKV 260
EAM +G + G+KV
Sbjct: 547 KEAMEDGEIDGNKV 560
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 233 (87.1 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 64/201 (31%), Positives = 106/201 (52%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIAR--DENGT--SRGFGFVNFDNPDDARRAL 248
LF+KNL+ TE L E FSK G + S I++ D+ GT S GFGFV + P+ A++AL
Sbjct: 719 LFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKAL 778
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ G ++ L + ++A R + ++K+ + K K S + V+NI T
Sbjct: 779 RRLQGCIVDGHKL-EVKISERAVRPAVK----SSRKKQTVKKQKTSKILVRNIPFQATVR 833
Query: 309 ELKAHFSQCGTITSAKVMRDEKGI--NKGFGFVCFSSPEEASKAVNTF-HGYMLHRKPLY 365
E++ FS G + + ++ + G ++GFGFV F + ++A KA N H L+ + L
Sbjct: 834 EIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAFNALCHSTHLYGRRLV 893
Query: 366 VAIAQRKEDRQAHLQLQYAQH 386
+ A +E +A L+ + A H
Sbjct: 894 LEWADTEETVEA-LRRRTADH 913
Score = 183 (69.5 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 64/227 (28%), Positives = 110/227 (48%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED--GK--SKGHGFVQFETEESANAAI 157
LF+KNL + L+E F G + SC ++ +D G S G GFV+++ ESA A+
Sbjct: 719 LFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKAL 778
Query: 158 ENLNGTTVGDKRIYVG---RFIK---KSDRVLPSPAAKYTN-LFMKNLDSDVTEEHLVEK 210
L G V ++ V R ++ KS R + + T+ + ++N+ T + E
Sbjct: 779 RRLQGCIVDGHKLEVKISERAVRPAVKSSRKKQTVKKQKTSKILVRNIPFQATVREIREL 838
Query: 211 FSKFGKIASLLIARDENGTS--RGFGFVNFDNPDDARRALEAMNGS--VIGSK-VLYAAR 265
FS FG++ ++ + + GT RGFGFV+F DA++A A+ S + G + VL A
Sbjct: 839 FSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAFNALCHSTHLYGRRLVLEWAD 898
Query: 266 AQKKAE--REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++ E R + H + +K++ + G + ++ DE L
Sbjct: 899 TEETVEALRRRTADHFHDSPKKKKRSEMLGEILEQLEEEEGNKDEAL 945
Score = 138 (53.6 bits), Expect = 9.8e-13, Sum P(2) = 9.8e-13
Identities = 59/235 (25%), Positives = 108/235 (45%)
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
K+ ++V + A+ + ++ +VTE+ + E FS +A + + ++ G S GF FV
Sbjct: 281 KQKNQVSSAEASTPHTVKLRGAPLNVTEQKIREFFSPLKPLA-IRMGKNTQGKSTGFIFV 339
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEE-----KR---KERI 288
+ + + ++AL+ IG + + +R + A +E + ++ KR +E
Sbjct: 340 DLKSEAEVQKALKRKK-EYIGGQYVEVSRCEN-APKETVTAKTDDQPWQRMKRDDEEEED 397
Query: 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN-KGFGFVCFSSPEEA 347
L G ++V+N+ T+E+L+ FS+ G ++ D KGF F+ + PE A
Sbjct: 398 LSESG-RLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHA 456
Query: 348 SKAV-----NTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYA-QHMAGIEGSSAN 396
KA F G M+H P + + ED A Y Q A + +SA+
Sbjct: 457 VKAYAEMDGQVFQGRMMHLLPSTIK-KLKIEDIDAEESSSYKKQKEAKDKANSAS 510
Score = 127 (49.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 269 KAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMR- 327
K E + + E++ ++ G +++KN++ T+ LK FS+ G + S + +
Sbjct: 692 KGSEETSAQDEEEDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKK 751
Query: 328 -DEKG--INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
D+ G ++ GFGFV + PE A KA+ G ++ L V I++R
Sbjct: 752 KDKAGTLLSMGFGFVEYKKPESAQKALRRLQGCIVDGHKLEVKISER 798
Score = 118 (46.6 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIE 158
++ L VKNL + R +++F FG + C + ++DGK + GF+ +++E+ A AA+
Sbjct: 1 MSRLIVKNLPNGMKEDRFRKLFAAFGTLTDCCLKFTKDGKFRKFGFIGYKSEDEAQAALN 60
Query: 159 NLNGTTVGDKRIYV 172
+ N + + R+ V
Sbjct: 61 HFNRSFIDTSRVTV 74
Score = 97 (39.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
+ L +KNL + + E+ + F+ FG + + ++G R FGF+ + + D+A+ AL
Sbjct: 2 SRLIVKNLPNGMKEDRFRKLFAAFGTLTDCCLKFTKDGKFRKFGFIGYKSEDEAQAALNH 61
Query: 251 MNGSVI 256
N S I
Sbjct: 62 FNRSFI 67
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 216 (81.1 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T E F + S ++ +D TG+S YG+VN++ P DA +AI
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ R P + ANL+V L +++ L+++F +G II+ ++
Sbjct: 149 LNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 206
Query: 133 TSE-DGKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G GF++F+ A AI+ LNG
Sbjct: 207 VDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Score = 202 (76.2 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 54/174 (31%), Positives = 88/174 (50%)
Query: 86 SWSCRDP----DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSK 140
S SC P + NL V L +++ + +F + G I SCK+ + G+S
Sbjct: 70 SRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSL 129
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+GFV + + A AI LNG + K I V + + S S + + NL++ L
Sbjct: 130 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPK 183
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
+T++ L + FS++G+I + I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 184 TMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Score = 136 (52.9 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EE ++ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 88 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 147
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 148 TLNGLRLQTKTIKVSYAR 165
Score = 130 (50.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T+E F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 88 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 147
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 148 TLNGLRLQTKTIKVSYAR 165
Score = 121 (47.7 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHK 407
Score = 105 (42.0 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + + KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 387 NGYRLGDRVLQVSFKTNK 404
Score = 102 (41.0 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+ +N+YV + +T +EL+ FSQ G I +++++ D+ G ++G GF+ F EA +A
Sbjct: 172 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEA 231
Query: 351 VNTFHG 356
+ +G
Sbjct: 232 IKGLNG 237
Score = 98 (39.6 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 387 NGYRLGDRVLQV 398
Score = 83 (34.3 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 28/99 (28%), Positives = 47/99 (47%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 166 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKR 225
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++K+ A L
Sbjct: 226 IEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQALL 264
Score = 40 (19.1 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 167 DKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEK 210
DKRI IK + PS AA+ + N S T + L+ +
Sbjct: 223 DKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQALLSQ 266
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 296 (109.3 bits), Expect = 5.2e-23, P = 5.2e-23
Identities = 100/349 (28%), Positives = 167/349 (47%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TT +L+VG+L+ + + EL S+ + + V D G + +GYV+F S D +
Sbjct: 304 TTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMTRKFGYVDFESAEDLEK 362
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNII 127
A+E+ ++ G +++ + D++K A L KNL + L+E+F++ I
Sbjct: 363 ALELTG-LKVFGNEIKLE-KPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR 420
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSD-RVL 183
S+DGKSKG +++F+TE A E GT + + I Y G + D R
Sbjct: 421 ----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGG 476
Query: 184 PSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + + L + NL TEE L E F K + + +++NG S+G+ F+ F +
Sbjct: 477 KNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASF 533
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA+ AL + N I + A R + + R R + ++VK +
Sbjct: 534 EDAKEALNSCNKREIEGR---AIRLELQGPRGS------PNARSQ-----PSKTLFVKGL 579
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 580 SEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 626
Score = 261 (96.9 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 83/261 (31%), Positives = 136/261 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVR-VCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L +L VT EL + F + A +R V KD G+S Y+ F + DA + E
Sbjct: 394 TLLAKNLPYKVTQDELKEVFED---AAEIRLVSKD---GKSKGIAYIEFKTEADAEKTFE 447
Query: 72 VKNHTQLHGKMLRISWSC---RDPDARK------SGVAN-LFVKNLIESIDNVRLQEMFQ 121
K T++ G+ + + ++ ++ D R SG + L + NL S LQE+F+
Sbjct: 448 EKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 507
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
I KV +++GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 508 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPR 561
Query: 182 VLPSPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++
Sbjct: 562 GSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNS 619
Query: 241 PDDARRALEAM-NGSVIGSKV 260
+DA+ A EAM +G + G+KV
Sbjct: 620 EEDAKAAKEAMEDGEIDGNKV 640
Score = 138 (53.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 41/161 (25%), Positives = 75/161 (46%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L KNL VT++ L E F +I L+++D G S+G ++ F DA + E
Sbjct: 395 LLAKNLPYKVTQDELKEVFEDAAEIR--LVSKD--GKSKGIAYIEFKTEADAEKTFEEKQ 450
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ I + + +K + + K + + + N+ T+E L+
Sbjct: 451 GTEIDGRSISLYYTGEKGQNQDY------RGGKNSTWSGESKTLVLSNLSYSATEETLQE 504
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + T KV +++ G +KG+ F+ F+S E+A +A+N+
Sbjct: 505 VFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 542
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 296 (109.3 bits), Expect = 5.2e-23, P = 5.2e-23
Identities = 100/349 (28%), Positives = 167/349 (47%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TT +L+VG+L+ + + EL S+ + + V D G + +GYV+F S D +
Sbjct: 305 TTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMTRKFGYVDFESAEDLEK 363
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNII 127
A+E+ ++ G +++ + D++K A L KNL + L+E+F++ I
Sbjct: 364 ALELTG-LKVFGNEIKLE-KPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR 421
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSD-RVL 183
S+DGKSKG +++F+TE A E GT + + I Y G + D R
Sbjct: 422 ----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGG 477
Query: 184 PSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + + L + NL TEE L E F K + + +++NG S+G+ F+ F +
Sbjct: 478 KNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASF 534
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA+ AL + N I + A R + + R R + ++VK +
Sbjct: 535 EDAKEALNSCNKREIEGR---AIRLELQGPRGS------PNARSQ-----PSKTLFVKGL 580
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 581 SEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 627
Score = 261 (96.9 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 83/261 (31%), Positives = 136/261 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVR-VCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L +L VT EL + F + A +R V KD G+S Y+ F + DA + E
Sbjct: 395 TLLAKNLPYKVTQDELKEVFED---AAEIRLVSKD---GKSKGIAYIEFKTEADAEKTFE 448
Query: 72 VKNHTQLHGKMLRISWSC---RDPDARK------SGVAN-LFVKNLIESIDNVRLQEMFQ 121
K T++ G+ + + ++ ++ D R SG + L + NL S LQE+F+
Sbjct: 449 EKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 508
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
I KV +++GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 509 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPR 562
Query: 182 VLPSPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++
Sbjct: 563 GSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNS 620
Query: 241 PDDARRALEAM-NGSVIGSKV 260
+DA+ A EAM +G + G+KV
Sbjct: 621 EEDAKAAKEAMEDGEIDGNKV 641
Score = 138 (53.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 41/161 (25%), Positives = 75/161 (46%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L KNL VT++ L E F +I L+++D G S+G ++ F DA + E
Sbjct: 396 LLAKNLPYKVTQDELKEVFEDAAEIR--LVSKD--GKSKGIAYIEFKTEADAEKTFEEKQ 451
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ I + + +K + + K + + + N+ T+E L+
Sbjct: 452 GTEIDGRSISLYYTGEKGQNQDY------RGGKNSTWSGESKTLVLSNLSYSATEETLQE 505
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + T KV +++ G +KG+ F+ F+S E+A +A+N+
Sbjct: 506 VFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 543
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 296 (109.3 bits), Expect = 5.3e-23, P = 5.3e-23
Identities = 100/349 (28%), Positives = 167/349 (47%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TT +L+VG+L+ + + EL S+ + + V D G + +GYV+F S D +
Sbjct: 306 TTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMTRKFGYVDFESAEDLEK 364
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNII 127
A+E+ ++ G +++ + D++K A L KNL + L+E+F++ I
Sbjct: 365 ALELTG-LKVFGNEIKLE-KPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR 422
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSD-RVL 183
S+DGKSKG +++F+TE A E GT + + I Y G + D R
Sbjct: 423 ----LVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGG 478
Query: 184 PSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + + L + NL TEE L E F K + + +++NG S+G+ F+ F +
Sbjct: 479 KNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASF 535
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA+ AL + N I + A R + + R R + ++VK +
Sbjct: 536 EDAKEALNSCNKREIEGR---AIRLELQGPRGS------PNARSQ-----PSKTLFVKGL 581
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 582 SEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 628
Score = 261 (96.9 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 83/261 (31%), Positives = 136/261 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVR-VCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L +L VT EL + F + A +R V KD G+S Y+ F + DA + E
Sbjct: 396 TLLAKNLPYKVTQDELKEVFED---AAEIRLVSKD---GKSKGIAYIEFKTEADAEKTFE 449
Query: 72 VKNHTQLHGKMLRISWSC---RDPDARK------SGVAN-LFVKNLIESIDNVRLQEMFQ 121
K T++ G+ + + ++ ++ D R SG + L + NL S LQE+F+
Sbjct: 450 EKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 509
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
I KV +++GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 510 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPR 563
Query: 182 VLPSPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++
Sbjct: 564 GSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNS 621
Query: 241 PDDARRALEAM-NGSVIGSKV 260
+DA+ A EAM +G + G+KV
Sbjct: 622 EEDAKAAKEAMEDGEIDGNKV 642
Score = 138 (53.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 41/161 (25%), Positives = 75/161 (46%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L KNL VT++ L E F +I L+++D G S+G ++ F DA + E
Sbjct: 397 LLAKNLPYKVTQDELKEVFEDAAEIR--LVSKD--GKSKGIAYIEFKTEADAEKTFEEKQ 452
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ I + + +K + + K + + + N+ T+E L+
Sbjct: 453 GTEIDGRSISLYYTGEKGQNQDY------RGGKNSTWSGESKTLVLSNLSYSATEETLQE 506
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + T KV +++ G +KG+ F+ F+S E+A +A+N+
Sbjct: 507 VFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 544
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 296 (109.3 bits), Expect = 5.3e-23, P = 5.3e-23
Identities = 100/349 (28%), Positives = 168/349 (48%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TT +L+VG+L+ + EL S+ + + V D G S +GYV+F S D +
Sbjct: 309 TTSFNLFVGNLNFSKSAPELKTGISDLFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEK 367
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNII 127
A+E+ ++ G +++ + D++K A L KNL + L+E+F++ +
Sbjct: 368 ALELTG-LKVFGNEIKLE-KPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFED---AV 422
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSD-RVL 183
++ S+DGKSKG +++F+TE A E GT + + I Y G + D R
Sbjct: 423 EIRLV-SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGG 481
Query: 184 PSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + + L + NL TEE L E F K + + +++NG S+G+ F+ F +
Sbjct: 482 KNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASF 538
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA+ AL + N I + A R + + R R + ++VK +
Sbjct: 539 EDAKEALNSCNKREIEGR---AIRLELQGPRGS------PNARSQ-----PSKTLFVKGL 584
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 585 SEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 631
Score = 256 (95.2 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 82/261 (31%), Positives = 134/261 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVR-VCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L +L VT EL + F + +R V KD G+S Y+ F + DA + E
Sbjct: 399 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSKD---GKSKGIAYIEFKTEADAEKTFE 452
Query: 72 VKNHTQLHGKMLRISWSC---RDPDARK------SGVAN-LFVKNLIESIDNVRLQEMFQ 121
K T++ G+ + + ++ + D R SG + L + NL S LQE+F+
Sbjct: 453 EKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 512
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
I KV +++GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 513 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPR 566
Query: 182 VLPSPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++
Sbjct: 567 GSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNS 624
Query: 241 PDDARRALEAM-NGSVIGSKV 260
+DA+ A EAM +G + G+KV
Sbjct: 625 EEDAKAAKEAMEDGEIDGNKV 645
Score = 134 (52.2 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 41/161 (25%), Positives = 75/161 (46%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L KNL VT++ L E F +I L+++D G S+G ++ F DA + E
Sbjct: 400 LLAKNLPYKVTQDELKEVFEDAVEIR--LVSKD--GKSKGIAYIEFKTEADAEKTFEEKQ 455
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ I + + +K + + K + + + N+ T+E L+
Sbjct: 456 GTEIDGRSISLYYTGEKGQSQDY------RGGKNSTWSGESKTLVLSNLSYSATEETLQE 509
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + T KV +++ G +KG+ F+ F+S E+A +A+N+
Sbjct: 510 VFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 547
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 216 (81.1 bits), Expect = 6.8e-23, Sum P(2) = 6.8e-23
Identities = 48/157 (30%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN+ P+DA
Sbjct: 34 TDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ ++++F +G I
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 201 (75.8 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 54/192 (28%), Positives = 99/192 (51%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G+I SCK+ + G+S G+GFV + A+ AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L ++++ + + FS++G+I +
Sbjct: 100 LNGLKLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSV-IGSK----VLYAARAQKKAERE 273
I D+ G SRG GF+ FD +A A++ +NG +G+ V +A +K +
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG-Q 212
Query: 274 QILRHQFEEKRK 285
+L H ++ +
Sbjct: 213 ALLTHLYQSSAR 224
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +E K+ F G I S K++RD+ G + G+GFV +S P +A KA+N
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T++ F G I S + RD+ G S G+GFVN+ +P+DA +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 250 AMNGSVIGSKVLYA--ARAQKKAEREQILR-----HQFEEKRKERILKYKGSNVYVKNID 302
+NG + +K + AR + R+ L +K E++ G + + +
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILV 158
Query: 303 DDVT 306
D VT
Sbjct: 159 DQVT 162
Score = 116 (45.9 bits), Expect = 6.8e-23, Sum P(2) = 6.8e-23
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAM 251
+F+ NL + E L + F FG + ++ + RD +GFGFV N D+A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 111 (44.1 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ + + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 96 (38.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 161 NGTTVGDKRIYV 172
NG +G++ + V
Sbjct: 346 NGYRLGERVLQV 357
Score = 80 (33.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/99 (27%), Positives = 48/99 (48%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L ++ E+ FS++ + + R+ D TG S G++ F
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++K+G A L
Sbjct: 177 IEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALL 215
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 216 (81.1 bits), Expect = 6.8e-23, Sum P(2) = 6.8e-23
Identities = 48/157 (30%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN+ P+DA
Sbjct: 34 TDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ ++++F +G I
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 201 (75.8 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 54/192 (28%), Positives = 99/192 (51%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G+I SCK+ + G+S G+GFV + A+ AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L ++++ + + FS++G+I +
Sbjct: 100 LNGLKLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSV-IGSK----VLYAARAQKKAERE 273
I D+ G SRG GF+ FD +A A++ +NG +G+ V +A +K +
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG-Q 212
Query: 274 QILRHQFEEKRK 285
+L H ++ +
Sbjct: 213 ALLTHLYQSSAR 224
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +E K+ F G I S K++RD+ G + G+GFV +S P +A KA+N
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T++ F G I S + RD+ G S G+GFVN+ +P+DA +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 250 AMNGSVIGSKVLYA--ARAQKKAEREQILR-----HQFEEKRKERILKYKGSNVYVKNID 302
+NG + +K + AR + R+ L +K E++ G + + +
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILV 158
Query: 303 DDVT 306
D VT
Sbjct: 159 DQVT 162
Score = 116 (45.9 bits), Expect = 6.8e-23, Sum P(2) = 6.8e-23
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAM 251
+F+ NL + E L + F FG + ++ + RD +GFGFV N D+A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 111 (44.1 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ + + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 96 (38.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 161 NGTTVGDKRIYV 172
NG +G++ + V
Sbjct: 346 NGYRLGERVLQV 357
Score = 80 (33.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/99 (27%), Positives = 48/99 (48%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L ++ E+ FS++ + + R+ D TG S G++ F
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++K+G A L
Sbjct: 177 IEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALL 215
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 216 (81.1 bits), Expect = 6.8e-23, Sum P(2) = 6.8e-23
Identities = 48/157 (30%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN+ P+DA
Sbjct: 34 TDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ ++++F +G I
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 201 (75.8 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 54/192 (28%), Positives = 99/192 (51%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G+I SCK+ + G+S G+GFV + A+ AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L ++++ + + FS++G+I +
Sbjct: 100 LNGLKLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSV-IGSK----VLYAARAQKKAERE 273
I D+ G SRG GF+ FD +A A++ +NG +G+ V +A +K +
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG-Q 212
Query: 274 QILRHQFEEKRK 285
+L H ++ +
Sbjct: 213 ALLTHLYQSSAR 224
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +E K+ F G I S K++RD+ G + G+GFV +S P +A KA+N
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T++ F G I S + RD+ G S G+GFVN+ +P+DA +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 250 AMNGSVIGSKVLYA--ARAQKKAEREQILR-----HQFEEKRKERILKYKGSNVYVKNID 302
+NG + +K + AR + R+ L +K E++ G + + +
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILV 158
Query: 303 DDVT 306
D VT
Sbjct: 159 DQVT 162
Score = 116 (45.9 bits), Expect = 6.8e-23, Sum P(2) = 6.8e-23
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAM 251
+F+ NL + E L + F FG + ++ + RD +GFGFV N D+A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 111 (44.1 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ + + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 96 (38.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 161 NGTTVGDKRIYV 172
NG +G++ + V
Sbjct: 346 NGYRLGERVLQV 357
Score = 80 (33.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/99 (27%), Positives = 48/99 (48%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L ++ E+ FS++ + + R+ D TG S G++ F
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++K+G A L
Sbjct: 177 IEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALL 215
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 208 (78.3 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 48/151 (31%), Positives = 81/151 (53%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T EL FS + S ++ +D G S YG+VN+L+ DA RAI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINT 80
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ + K ANL++ L ++ +++MF FG+II+ +V
Sbjct: 81 LNGLRLQSKTIKVSFARPSSETIKD--ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVL 138
Query: 133 TSE-DGKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G F++F+ A AI + NG
Sbjct: 139 VDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 187 (70.9 bits), Expect = 8.8e-20, Sum P(2) = 8.8e-20
Identities = 51/167 (30%), Positives = 80/167 (47%)
Query: 89 CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQF 147
CRD R NL V L +++ L+ +F + G + S K+ + G S G+GFV +
Sbjct: 13 CRDDIGR----TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHL 207
+ A AI LNG + K I V F + S + K NL++ L +T++ +
Sbjct: 69 LNAKDAERAINTLNGLRLQSKTIKVS-FARPSSETI-----KDANLYISGLPRTMTQKDV 122
Query: 208 VEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
+ F FG I + + D+ G SRG F+ FD +A A+ + NG
Sbjct: 123 EDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 46/174 (26%), Positives = 84/174 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T++ L FS G++ S + RD+ G+ F N +A+ A A
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYLNAKDAERA 77
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K ++ F E I K +N+Y+ + +T +++
Sbjct: 78 IN-------TLNGLRLQSKT-----IKVSFARPSSETI---KDANLYISGLPRTMTQKDV 122
Query: 311 KAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ F G I +++V+ D+ G+++G F+ F EA +A+ +F+G H+ P
Sbjct: 123 EDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG---HKPP 173
Score = 136 (52.9 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 29/91 (31%), Positives = 57/91 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +EL++ FS G + SAK++RD+ G + G+GFV + + ++A +A+N
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 353 TFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
T +G L K + V+ A+ + + A+L +
Sbjct: 80 TLNGLRLQSKTIKVSFARPSSETIKDANLYI 110
Score = 120 (47.3 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N ++A A+ ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G K L + K+ +
Sbjct: 306 NGYRLGDKTLQVSFKTSKSHK 326
Score = 116 (45.9 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
+++ N+ D + L F G +T+ KV+RD KGFGFV ++ EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V+ K +
Sbjct: 306 NGYRLGDKTLQVSFKTSKSHK 326
Score = 114 (45.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 30/81 (37%), Positives = 40/81 (49%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+F+ NL + D L +MF FG + + KV K KG GFV E A AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 161 NGTTVGDKRIYVGRFIKKSDR 181
NG +GDK + V KS +
Sbjct: 306 NGYRLGDKTLQVSFKTSKSHK 326
Score = 69 (29.3 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 6 PTATT--PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P++ T A+LY+ L +T ++ D F F + + RV D TG S ++ F
Sbjct: 98 PSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKR 157
Query: 64 HDAIRAI 70
+A AI
Sbjct: 158 SEAEEAI 164
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 216 (81.1 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
Identities = 48/157 (30%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN+ P+DA
Sbjct: 34 TDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ ++++F +G I
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 200 (75.5 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 48/155 (30%), Positives = 84/155 (54%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G+I SCK+ + G+S G+GFV + A+ AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L ++++ + + FS++G+I +
Sbjct: 100 LNGLKLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +E K+ F G I S K++RD+ G + G+GFV +S P +A KA+N
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T++ F G I S + RD+ G S G+GFVN+ +P+DA +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 250 AMNGSVIGSKVLYA--ARAQKKAEREQILR-----HQFEEKRKERILKYKGSNVYVKNID 302
+NG + +K + AR + R+ L +K E++ G + + +
Sbjct: 99 TLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILV 158
Query: 303 DDVT 306
D VT
Sbjct: 159 DQVT 162
Score = 116 (45.9 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAM 251
+F+ NL + E L + F FG + ++ + RD +GFGFV N D+A A+ ++
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 347 NGYRLGERVLQVSFKTSKQHK 367
Score = 111 (44.1 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ + + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L + L V+ K+ +
Sbjct: 347 NGYRLGERVLQVSFKTSKQHK 367
Score = 96 (38.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 161 NGTTVGDKRIYV 172
NG +G++ + V
Sbjct: 347 NGYRLGERVLQV 358
Score = 80 (33.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 27/99 (27%), Positives = 48/99 (48%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L ++ E+ FS++ + + R+ D TG S G++ F
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++K+G A L
Sbjct: 177 IEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALL 215
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 215 (80.7 bits), Expect = 8.9e-23, Sum P(2) = 8.9e-23
Identities = 48/157 (30%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN+ P+DA
Sbjct: 34 TDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ ++++F +G I
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 202 (76.2 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 54/192 (28%), Positives = 99/192 (51%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G+I SCK+ + G+S G+GFV + A+ AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L ++++ + + FS++G+I +
Sbjct: 100 LNGLKLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSV-IGSK----VLYAARAQKKAERE 273
I D+ G SRG GF+ FD +A A++ +NG +G+ V +A +K +
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG-Q 212
Query: 274 QILRHQFEEKRK 285
+L H ++ +
Sbjct: 213 ALLTHLYQSSAR 224
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +E K+ F G I S K++RD+ G + G+GFV +S P +A KA+N
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 130 (50.8 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T++ F G I S + RD+ G S G+GFVN+ +P+DA +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 116 (45.9 bits), Expect = 8.9e-23, Sum P(2) = 8.9e-23
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAM 251
+F+ NL + E L + F FG + ++ + RD +GFGFV N D+A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 111 (44.1 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ + + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 109 (43.4 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 29/106 (27%), Positives = 56/106 (52%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+ +N+YV + ++ +E++ FSQ G I +++++ D+ G+++G GF+ F EA +A
Sbjct: 123 RDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEA 182
Query: 351 VNTFHGY--MLHRKPLYVAIAQRKEDR--QA---HLQLQYAQHMAG 389
+ +G + +P+ V A + QA HL A+ AG
Sbjct: 183 IKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
Score = 96 (38.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 161 NGTTVGDKRIYV 172
NG +G++ + V
Sbjct: 346 NGYRLGERVLQV 357
Score = 80 (33.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/99 (27%), Positives = 48/99 (48%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L ++ E+ FS++ + + R+ D TG S G++ F
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKR 176
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++K+G A L
Sbjct: 177 IEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALL 215
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 215 (80.7 bits), Expect = 8.9e-23, Sum P(2) = 8.9e-23
Identities = 48/157 (30%), Positives = 86/157 (54%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T E F + S ++ +D TG+S YG+VN+ P+DA
Sbjct: 34 TDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ ++++F +G I
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 202 (76.2 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 54/192 (28%), Positives = 99/192 (51%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ + +F + G+I SCK+ + G+S G+GFV + A+ AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L ++++ + + FS++G+I +
Sbjct: 100 LNGLKLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSV-IGSK----VLYAARAQKKAERE 273
I D+ G SRG GF+ FD +A A++ +NG +G+ V +A +K +
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG-Q 212
Query: 274 QILRHQFEEKRK 285
+L H ++ +
Sbjct: 213 ALLTHLYQSSAR 224
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +E K+ F G I S K++RD+ G + G+GFV +S P +A KA+N
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 130 (50.8 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T++ F G I S + RD+ G S G+GFVN+ +P+DA +A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 99 TLNGLKLQTKTIKVSYAR 116
Score = 116 (45.9 bits), Expect = 8.9e-23, Sum P(2) = 8.9e-23
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAM 251
+F+ NL + E L + F FG + ++ + RD +GFGFV N D+A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 111 (44.1 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ + + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 109 (43.4 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 29/106 (27%), Positives = 56/106 (52%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+ +N+YV + ++ +E++ FSQ G I +++++ D+ G+++G GF+ F EA +A
Sbjct: 123 RDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEA 182
Query: 351 VNTFHGY--MLHRKPLYVAIAQRKEDR--QA---HLQLQYAQHMAG 389
+ +G + +P+ V A + QA HL A+ AG
Sbjct: 183 IKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
Score = 96 (38.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L ++F FG + + KV K KG GFV + A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 161 NGTTVGDKRIYV 172
NG +G++ + V
Sbjct: 346 NGYRLGERVLQV 357
Score = 80 (33.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/99 (27%), Positives = 48/99 (48%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L ++ E+ FS++ + + R+ D TG S G++ F
Sbjct: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKR 176
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANL 102
+A AI+ N + G I+ + ++K+G A L
Sbjct: 177 IEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALL 215
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 294 (108.6 bits), Expect = 9.1e-23, P = 9.1e-23
Identities = 100/349 (28%), Positives = 169/349 (48%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TT +L+VG+L+ + EL S+ + + V D G S +GYV+F S D +
Sbjct: 317 TTSFNLFVGNLNFSKSASELKTGISDVFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEK 375
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNII 127
A+E+ ++ G +++ + D++K A L KNL + L+E+F++ +
Sbjct: 376 ALELTG-LKVFGNEIKLE-KPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFED---AV 430
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSD-RVL 183
++ S+DGKSKG +++F+TE A +E GT + + I Y G + D R
Sbjct: 431 EIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGG 489
Query: 184 PSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + + L + NL TEE L E F K + + +++NG S+G+ F+ F +
Sbjct: 490 KNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASF 546
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA+ AL + N I + A R + + R R + ++VK +
Sbjct: 547 EDAKEALNSCNKREIEGR---AIRLELQGPRGS------PNARSQ-----PSKTLFVKGL 592
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
++ T+E LK F G+I + V E G +KGFGFV F+S E+A A
Sbjct: 593 SEETTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDAKAA 639
Score = 257 (95.5 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 82/261 (31%), Positives = 136/261 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVR-VCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L +L VT EL + F + +R V KD G+S Y+ F + DA + +E
Sbjct: 407 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 460
Query: 72 VKNHTQLHGKMLRISWSC---RDPDARK------SGVAN-LFVKNLIESIDNVRLQEMFQ 121
K T++ G+ + + ++ ++ D R SG + L + NL S LQE+F+
Sbjct: 461 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 520
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
I KV +++GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 521 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPR 574
Query: 182 VLPSPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
P+ ++ + LF+K L + TEE L E F G I + ++ E G+S+GFGFV+F++
Sbjct: 575 GSPNARSQPSKTLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 632
Query: 241 PDDARRALEAM-NGSVIGSKV 260
+DA+ A EAM +G + G+KV
Sbjct: 633 EEDAKAAKEAMEDGEIDGNKV 653
Score = 138 (53.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 42/161 (26%), Positives = 76/161 (47%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L KNL VT++ L E F +I L+++D G S+G ++ F DA + LE
Sbjct: 408 LLAKNLPYKVTQDELKEVFEDAVEIR--LVSKD--GKSKGIAYIEFKTEADAEKTLEEKQ 463
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ I + + +K + + K + + + N+ T+E L+
Sbjct: 464 GTEIDGRSISLYYTGEKGQNQDF------RGGKNSTWSGESKTLVLSNLAYSATEETLQE 517
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + T KV +++ G +KG+ F+ F+S E+A +A+N+
Sbjct: 518 VFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 555
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 282 (104.3 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 77/271 (28%), Positives = 139/271 (51%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L VT+ + F++ S+ +V D G + Y +V F A +A+
Sbjct: 45 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQAL 101
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVA-----NLFVKNLIESIDNVRLQEMFQNFGN 125
+ N L + ++++W+ +P ++S + ++FV +L +DN +L+E FQ FG+
Sbjct: 102 QTMNKRLLLDREMKVNWAV-EPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGD 160
Query: 126 IISCKVATSEDG-KSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG----------- 173
+ KV + KSKG+GFV + E A AIE +NG +G + I
Sbjct: 161 VSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEK 220
Query: 174 --RFIKKS-DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS 230
+ +KS D + + T++++ N+ S +TE+ + + F+ FG+I + I +
Sbjct: 221 PSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRIFK-----M 274
Query: 231 RGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+G+ FV FDN D A +A+ MN +G +++
Sbjct: 275 QGYAFVKFDNKDAAAKAIVQMNNQDVGGQLV 305
Score = 280 (103.6 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 69/253 (27%), Positives = 130/253 (51%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL ++ + +F G++ KV DG + + FV+F A+ A++ +N
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIF--DGSNDPYAFVEFSDHGQASQALQTMN 105
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
+ D+ + V ++ + ++ ++F+ +L S+V + L E F FG ++
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAK 165
Query: 222 IARDENGT-SRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
+ RD N T S+G+GFV++ ++A RA+E MNG +G + + A +K ++ H
Sbjct: 166 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN 225
Query: 281 EEKRKERILKYKGSN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
E+ E + G N VYV NI +T++E++ F+ G IT ++ + + G+ F
Sbjct: 226 EKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQ-----GYAF 279
Query: 339 VCFSSPEEASKAV 351
V F + + A+KA+
Sbjct: 280 VKFDNKDAAAKAI 292
Score = 186 (70.5 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 56/219 (25%), Positives = 107/219 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NLDS VTE+ + F++ G + + D G++ + FV F + A +AL+ MN
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--GSNDPYAFVEFSDHGQASQALQTMN 105
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEE-KRKERILKYKGSNVYVKNIDDDVTDEELK 311
++ +RE + E +++ +I + +V+V ++ +V +++L+
Sbjct: 106 KRLL-------------LDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLR 152
Query: 312 AHFSQCGTITSAKVMRDEKGI-NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
F G ++ AKV+RD +KG+GFV + EEA +A+ +G L R+ + A
Sbjct: 153 EAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWAT 212
Query: 371 RK---EDRQAHL-QLQYAQHMAGIEGSSANVIPSGYPSL 405
RK +++ +H + Y + G + +V SL
Sbjct: 213 RKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASL 251
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 204 (76.9 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 50/168 (29%), Positives = 89/168 (52%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDS--------TTGRSTCYG 56
P A T +L + L +++ EL FS + S ++ +D T G S YG
Sbjct: 51 PSDAKT--NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYG 108
Query: 57 YVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRL 116
+VN+++P DA RAI N +L K +++S++ D K ANL++ L +++ +
Sbjct: 109 FVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIKD--ANLYISGLPKTMTQKNV 166
Query: 117 QEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGT 163
++MF +G II+ ++ + G S+G F++F+ A AI++LNG+
Sbjct: 167 EDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGS 214
Score = 181 (68.8 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 50/176 (28%), Positives = 84/176 (47%)
Query: 91 DP--DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED---------GKS 139
DP D NL + L +++ L+ +F + G + S K+ + G S
Sbjct: 45 DPMGDEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHS 104
Query: 140 KGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLD 199
G+GFV + A AI LNG + K I V SD + K NL++ L
Sbjct: 105 LGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGI------KDANLYISGLP 158
Query: 200 SDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGS 254
+T++++ + F+++G+I + I D+ +G SRG F+ FD +A A++ +NGS
Sbjct: 159 KTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGS 214
Score = 130 (50.8 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN---------GTSRGFGFV 236
P+ TNL + L ++++E L FS G++ S + RD+ G S G+GFV
Sbjct: 51 PSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFV 110
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
N+ NP DA RA+ +NG + SK + + A+ ++
Sbjct: 111 NYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSD 145
Score = 128 (50.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 30/99 (30%), Positives = 57/99 (57%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK---------GINKGFGFVCFSSP 344
+N+ + + +++ EEL++ FS G + SAK++RD+ G + G+GFV + +P
Sbjct: 56 TNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNP 115
Query: 345 EEASKAVNTFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
+A +A+NT +G L K + V+ A+ D + A+L +
Sbjct: 116 SDAERAINTLNGLRLQSKTIKVSYARPSSDGIKDANLYI 154
Score = 127 (49.8 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N + +GFGFV N ++A A+ ++
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G KVL + K+ +
Sbjct: 348 NGYRLGDKVLQVSFKSSKSHK 368
Score = 120 (47.3 bits), Expect = 7.8e-22, Sum P(2) = 7.8e-22
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN-KGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ EEA+ A+++
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V+ K +
Sbjct: 348 NGYRLGDKVLQVSFKSSKSHK 368
Score = 113 (44.8 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 31/81 (38%), Positives = 40/81 (49%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL + D L +MF FG + + KV K KG GFV E A AI +L
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 161 NGTTVGDKRIYVGRFIKKSDR 181
NG +GDK + V KS +
Sbjct: 348 NGYRLGDKVLQVSFKSSKSHK 368
Score = 69 (29.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LY+ L +T + D F+++ + + R+ D +G S ++ F +A AI+
Sbjct: 150 ANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIK 209
Query: 72 VKNHTQLHG 80
N ++ G
Sbjct: 210 DLNGSKPSG 218
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 296 (109.3 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 100/346 (28%), Positives = 167/346 (48%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TT +L+VG+L+ + + EL S+ + + V D G S +GYV+F S D +
Sbjct: 231 TTSFNLFVGNLNFNKSAPELKTGISDLFAKNDLAVV-DVRIGVSRKFGYVDFESAEDLEK 289
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNII 127
A+E+ ++ G +++ + D++K A L KNL + L+E+F++ +
Sbjct: 290 ALELTG-LKVFGNEIKLE-KPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFED---AV 344
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLP 184
++ S+DGKSKG +++F+TE A +E GT + Y G + D
Sbjct: 345 EIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEID----YTGEKGQSQDHRGGKNS 399
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+ + + L + NL TEE L E F K I + +++NG S+G+ F+ F + +DA
Sbjct: 400 TWSGESKTLVLSNLSYSATEETLQEVFEKATHIK---VPQNQNGKSKGYAFIEFASFEDA 456
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+ AL + N I + A R + + R R + ++VK + +D
Sbjct: 457 KEALNSCNKREIEGR---AIRLELQGPRGS------PNARSQ-----PSKTLFVKGLSED 502
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
T+E LK F G+I + V E G +KGFGFV F+S E+A A
Sbjct: 503 TTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDAKAA 546
Score = 256 (95.2 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 81/254 (31%), Positives = 132/254 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVR-VCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L +L VT EL + F + +R V KD G+S Y+ F + DA + +E
Sbjct: 321 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 374
Query: 72 VKNHTQLH--GKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNIIS 128
K T++ G+ + ++ SG + L + NL S LQE+F+ +I
Sbjct: 375 EKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHI-- 432
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
KV +++GKSKG+ F++F + E A A+ + N + + I R + R P+ +
Sbjct: 433 -KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPRGSPNARS 488
Query: 189 KYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
+ + LF+K L D TEE L E F G I + ++ E G+S+GFGFV+F++ +DA+ A
Sbjct: 489 QPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDAKAA 546
Query: 248 LEAM-NGSVIGSKV 260
EAM +G + G+KV
Sbjct: 547 KEAMEDGEIDGNKV 560
Score = 37 (18.1 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLAS 40
V+P TPA V T G+ A S K AS
Sbjct: 47 VIPQKKVTPAKAVVTPGKKRATPGKAVVATSGKKGAAS 84
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 207 (77.9 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 55/170 (32%), Positives = 91/170 (53%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTT-------------GRSTCYG 56
T +L V L +T+ E+ FS + SV++ +D + G+S YG
Sbjct: 147 TRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYG 206
Query: 57 YVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRL 116
+VN++ P DA +A+ V N +L K +++S++ DA K ANL+V L +++ L
Sbjct: 207 FVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKG--ANLYVSGLPKTMTQQEL 264
Query: 117 QEMFQNFGNIISCKVATS--EDGKSKGHGFVQFETEESANAAIENLNGTT 164
+ +F FG II+ ++ + D ++KG GF++F+ E A AI LNGTT
Sbjct: 265 EAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTT 314
Score = 167 (63.8 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 52/174 (29%), Positives = 85/174 (48%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED--------------GKSKGHGFVQ 146
NL V L +++ ++ +F + G I S K+ + G+S G+GFV
Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 209
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
+ + A A+ LNG + +K I V F + S S A K NL++ L +T++
Sbjct: 210 YVRPQDAEQAVNVLNGLRLQNKTIKVS-FARPS-----SDAIKGANLYVSGLPKTMTQQE 263
Query: 207 LVEKFSKFGKI-ASLLIARDENGT-SRGFGFVNFDNPDDARRALEAMNGSVIGS 258
L F+ FG I S ++ N T ++G GF+ FD ++A RA+ A+NG+ S
Sbjct: 264 LEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSS 317
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 43/172 (25%), Positives = 82/172 (47%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L +TE+ + FS G+I S+ + RD++ +++ NP +
Sbjct: 149 TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQV-----YIDPLNPQAPSKGQSL 203
Query: 251 MNGSVIGSKVLYAARAQKKAE----REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
G V + A +A + + ++ F + I KG+N+YV + +T
Sbjct: 204 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAI---KGANLYVSGLPKTMT 260
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGIN--KGFGFVCFSSPEEASKAVNTFHG 356
+EL+A F+ G I +++++++ KG GF+ F EEA++A+ +G
Sbjct: 261 QQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 127 (49.8 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDA 244
P Y +F+ NL + E L + F FG + S+ I +D +G+GFV+ N D+A
Sbjct: 398 PGGAYP-IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEA 456
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAE 271
A+ A+NG +G++VL + KA+
Sbjct: 457 AMAIRALNGYTMGNRVLQVSFKTNKAK 483
Score = 96 (38.9 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN-KGFGFVCFSSPEEASKAVNTF 354
+++ N+ + + L F G + S K+++D KG+GFV ++ +EA+ A+
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY + + L V+ K
Sbjct: 464 NGYTMGNRVLQVSFKTNK 481
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 217 (81.4 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 63/201 (31%), Positives = 104/201 (51%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN--GT--SRGFGFVNFDNPDDARRAL 248
LF+KNL+ D TEE L E FSK G + S I++ +N G S GFGFV + P+ A++AL
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ + G V+ L R ++A + + ++K+ K S + V+NI
Sbjct: 792 KQLQGHVVDGHKL-EVRISERATKPAVTL----ARKKQVPRKQTTSKILVRNIPFQAHSR 846
Query: 309 ELKAHFSQCGTITSAKVMRDEKGI--NKGFGFVCFSSPEEASKAVNTF-HGYMLHRKPLY 365
E++ FS G + + ++ + G ++GFGFV F + ++A +A N H L+ + L
Sbjct: 847 EIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLV 906
Query: 366 VAIAQRKEDRQAHLQLQYAQH 386
+ A + QA L+ + A H
Sbjct: 907 LEWADSEVTLQA-LRRKTAAH 926
Score = 170 (64.9 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 48/163 (29%), Positives = 80/163 (49%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK----SKGHGFVQFETEESANAAI 157
LF+KNL +L+E+F G + SC ++ ++ S G GFV++ E A A+
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 158 ENLNGTTVGDKRIYVG---RFIKKS---DRVLPSPAAKYTN-LFMKNLDSDVTEEHLVEK 210
+ L G V ++ V R K + R P + T+ + ++N+ + E
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851
Query: 211 FSKFGKIASLLIARDENGTS--RGFGFVNFDNPDDARRALEAM 251
FS FG++ ++ + + GT RGFGFV+F DA+RA A+
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 154 (59.3 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 63/244 (25%), Positives = 107/244 (43%)
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHL 207
+ +S A E G G KR R + P +T + ++ +VTE+++
Sbjct: 254 QERDSKGAGQEQ--GMPAGKKRPPEARAETEKPANQKEPTTCHT-VKLRGAPFNVTEKNV 310
Query: 208 VEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267
+E + +A + I R+ +G G+ FV+F N ++ ++AL+ N +G + + R +
Sbjct: 311 MEFLAPLKPVA-IRIVRNAHGNKTGYIFVDFSNEEEVKQALKC-NREYMGGRYIEVFREK 368
Query: 268 -----KKAEREQILRHQ---FEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT 319
K A + Q E +E L G ++V+N+ T+E+L+ FS+ G
Sbjct: 369 NVPTTKGAPKNTTKSWQGRILGENEEEEDLAESG-RLFVRNLPYTSTEEDLEKLFSKYGP 427
Query: 320 ITSAKVMRDEKGIN-KGFGFVCFSSPEEASKAVN-----TFHGYMLHRKPLYVAIAQRKE 373
++ D KGF F+ F PE A KA + F G MLH P + + E
Sbjct: 428 LSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIK-KEASE 486
Query: 374 DRQA 377
D A
Sbjct: 487 DASA 490
Score = 152 (58.6 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 33/109 (30%), Positives = 62/109 (56%)
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
++ A+ + EE+ +E G +++KN++ D T+E+LK FS+ GT+ S +
Sbjct: 703 EEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSIS 762
Query: 327 R--DEKGI--NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+ ++ G+ + GFGFV + PE+A KA+ G+++ L V I++R
Sbjct: 763 KKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISER 811
Score = 126 (49.4 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 37/126 (29%), Positives = 60/126 (47%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIE 158
++ L VKNL + R +++F FG + C + ++DGK + GF+ F++EE A A +
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQK 60
Query: 159 NLNGTTVGDKRIYVGRFIKK-SDRVLPSPAAKYTNLFM--KNLDSDVTEEHLVEKFSKFG 215
+ N + + RI V F K D P +K+ K D T ++K K
Sbjct: 61 HFNKSFIDTSRITV-EFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPE-IKKDEKKK 118
Query: 216 KIASLL 221
K+A L
Sbjct: 119 KVAGQL 124
Score = 108 (43.1 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 55/256 (21%), Positives = 101/256 (39%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+V +L T+ +L FS++ L+ + DS T + + ++ F+ P A++A
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 74 NHTQLHGKMLRISWSCRDPDARK--SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+ G+ML + S +A + S + + K E+ D N+ +
Sbjct: 464 DGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASS-HNWNTLFMGPN 522
Query: 132 ATSEDGKSKGHGFVQ--FETEESANAAIENLNGTT--VGD-KRIYVGRFIKKSDRVLPSP 186
A ++ K + F+ E + A+ G T V + +R + + +
Sbjct: 523 AVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAA 582
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
T + +KNL + L E F FG + +L+ E G + V F P +AR+
Sbjct: 583 ERSKTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLP--EGGIT---AIVEFLEPLEARK 637
Query: 247 ALEAMNGSVIGSKVLY 262
A + S LY
Sbjct: 638 AFRHLAYSKFHHVPLY 653
Score = 97 (39.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
+ L +KNL + + EE + F+ FG + + ++G R FGF+ F + ++A++A +
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 251 MNGSVI 256
N S I
Sbjct: 62 FNKSFI 67
Score = 61 (26.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
+ VKN+ +L+ F G++ +V+ E GI V F P EA KA
Sbjct: 589 ILVKNLPAGTLAAQLQETFGHFGSL--GRVLLPEGGIT---AIVEFLEPLEARKAFRHLA 643
Query: 356 GYMLHRKPLYV 366
H PLY+
Sbjct: 644 YSKFHHVPLYL 654
Score = 49 (22.3 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+ V +L +L + F F SL V + + T V FL P +A +A
Sbjct: 589 ILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGITA------IVEFLEPLEARKAFRHL 642
Query: 74 NHTQLHGKMLRISWS 88
+++ H L + W+
Sbjct: 643 AYSKFHHVPLYLEWA 657
Score = 45 (20.9 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 27 ELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
+LF AF S++ KD G+ +G++ F S +A +A
Sbjct: 20 QLFAAFGTLTD-CSLKFTKD---GKFRKFGFIGFKSEEEAQKA 58
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 204 (76.9 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 48/151 (31%), Positives = 80/151 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T EL FS + S ++ +D G S YG+VN+L+ DA RAI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINT 80
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S + ++ K ANL++ L ++ +++MF FG II+ +V
Sbjct: 81 LNGLRLQSKTIKVSVARPSSESIKD--ANLYISGLPRTMTQKDVEDMFLPFGRIINSRVL 138
Query: 133 TSE-DGKSKGHGFVQFETEESANAAIENLNG 162
+ G S+G F++F+ A AI + NG
Sbjct: 139 VDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 184 (69.8 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 50/167 (29%), Positives = 80/167 (47%)
Query: 89 CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQF 147
CRD R NL V L +++ L+ +F + G + S K+ + G S G+GFV +
Sbjct: 13 CRDDIGR----TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHL 207
+ A AI LNG + K I V S+ + K NL++ L +T++ +
Sbjct: 69 LNAKDAERAINTLNGLRLQSKTIKVSVARPSSESI------KDANLYISGLPRTMTQKDV 122
Query: 208 VEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
+ F FG+I + + D+ G SRG F+ FD +A A+ + NG
Sbjct: 123 EDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 45/174 (25%), Positives = 83/174 (47%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL + L ++T++ L FS G++ S + RD+ G+ F N +A+ A A
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYLNAKDAERA 77
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N L R Q K + + R E K +N+Y+ + +T +++
Sbjct: 78 IN-------TLNGLRLQSKTIKVSVARPSSES--------IKDANLYISGLPRTMTQKDV 122
Query: 311 KAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ F G I +++V+ D+ G+++G F+ F EA +A+ +F+G H+ P
Sbjct: 123 EDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG---HKPP 173
Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 29/91 (31%), Positives = 58/91 (63%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T +EL++ FS G + SAK++RD+ G + G+GFV + + ++A +A+N
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 353 TFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
T +G L K + V++A+ + + A+L +
Sbjct: 80 TLNGLRLQSKTIKVSVARPSSESIKDANLYI 110
Score = 117 (46.2 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N ++A A+ ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 252 NGSVIGSKVL 261
NG +G K L
Sbjct: 306 NGYRLGDKTL 315
Score = 114 (45.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 31/79 (39%), Positives = 40/79 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+F+ NL + D L +MF FG + + KV K KG GFV E A AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 161 NGTTVGDKRIYVGRFIKKS 179
NG +GDK + V F K S
Sbjct: 306 NGYRLGDKTLQV--FFKTS 322
Score = 113 (44.8 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
+++ N+ D + L F G +T+ KV+RD KGFGFV ++ EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V K +
Sbjct: 306 NGYRLGDKTLQVFFKTSKSHK 326
Score = 69 (29.3 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 1 MAVVPPTATT--PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYV 58
++V P++ + A+LY+ L +T ++ D F F + + RV D TG S ++
Sbjct: 93 VSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFI 152
Query: 59 NFLSPHDAIRAI 70
F +A AI
Sbjct: 153 RFDKRSEAEEAI 164
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 207 (77.9 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
Identities = 52/158 (32%), Positives = 85/158 (53%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++ E+ F F + S ++ +D TG+S YG+VN++ DA +AI
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS---- 128
N +L K +++S + ++ K ANL+V L +++ L+ +F +G II+
Sbjct: 171 LNGLRLQNKTIKVSIARPSSESIKG--ANLYVSGLPKNMTQSDLESLFSPYGKIITSRIL 228
Query: 129 CKVATSED--GKSKGHGFVQFETEESANAAIENLNGTT 164
C T E G SKG GF++F+ A+ AI+ LNGTT
Sbjct: 229 CDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTT 266
Score = 203 (76.5 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 56/171 (32%), Positives = 91/171 (53%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+PD + NL V L +++ ++ +F +FG + SCK+ + G+S G+GFV +
Sbjct: 105 EPDPK----TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVK 160
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
+E A AI LNG + +K I V + S S + K NL++ L ++T+ L
Sbjct: 161 QEDAEKAINALNGLRLQNKTIKVS-IARPS-----SESIKGANLYVSGLPKNMTQSDLES 214
Query: 210 KFSKFGKIASLLIARD----EN--GTSRGFGFVNFDNPDDARRALEAMNGS 254
FS +GKI + I D E+ G S+G GF+ FD +A RA++ +NG+
Sbjct: 215 LFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGT 265
Score = 137 (53.3 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 59/233 (25%), Positives = 93/233 (39%)
Query: 154 NAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSK 213
NAA N N + ++ P P TNL + L ++++ + F
Sbjct: 76 NAASNNNNNNNNTNNNNNNNATANNNNNNEPDPK---TNLIVNYLPQTMSQDEIRSLFVS 132
Query: 214 FGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FG++ S + RD+ G S G+GFVN+ +DA +A+ A+NG R Q K +
Sbjct: 133 FGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNG----------LRLQNKTIK 182
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNID-DDVTDEELKAHFSQ--CGTITSAKVMRDE 329
I R E K L G + D + + K S+ C IT
Sbjct: 183 VSIARPS-SESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAA--- 238
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHR--KPLYVAIAQRKEDRQAHLQ 380
G++KG GF+ F EA +A+ +G +P+ V A + +Q
Sbjct: 239 -GLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQ 290
Score = 123 (48.4 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + S+ + RD ++ +GFGFV N ++A A++++
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 252 NGSVIGSKVL 261
NG +G++VL
Sbjct: 423 NGYTLGNRVL 432
Score = 113 (44.8 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G + S KV+RD + KGFGFV ++ EEA A+ +
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 423 NGYTLGNRVLQVSFKTNK 440
Score = 107 (42.7 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL + L ++F FG + S KV + K KG GFV E A AI++L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 161 NGTTVGDKRIYV 172
NG T+G++ + V
Sbjct: 423 NGYTLGNRVLQV 434
Score = 75 (31.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGR-----STCYGYVNFLSPHDA 66
A+LYV L ++T +L FS + + + R+ D+ TG S G++ F +A
Sbjct: 196 ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEA 255
Query: 67 IRAIEVKNHT 76
RAI+ N T
Sbjct: 256 DRAIKELNGT 265
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 220 (82.5 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 57/161 (35%), Positives = 91/161 (56%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L + NL S LQE+F+ I KV +++GKSKG+ F++F + E A A+ + N
Sbjct: 113 LVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 169
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASL 220
+ + I R + R P+ ++ + LF+K L D TEE L E F G + +
Sbjct: 170 KREIEGRAI---RLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRAR 224
Query: 221 LIARDENGTSRGFGFVNFDNPDDARRALEAM-NGSVIGSKV 260
++ E G+S+GFGFV+F++ +DA+ A EAM +G + G+KV
Sbjct: 225 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 265
Score = 177 (67.4 bits), Expect = 8.2e-14, Sum P(2) = 8.2e-14
Identities = 61/224 (27%), Positives = 99/224 (44%)
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD---KRIYVGRFIKKSDRVLPSP 186
K T DG+S + + E+ N +T D K +++ + R L
Sbjct: 50 KQGTEIDGRSIS---LYYTGEKGQNQDYRGGKNSTWSDDSRKTDQSSAYVRTTSRTLQHV 106
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
+ L + NL TEE L E F K + + +++NG S+G+ F+ F + +DA+
Sbjct: 107 LGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKE 163
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
AL + N I + A R + + R R + ++VK + +D T
Sbjct: 164 ALNSCNKREIEGR---AIRLELQGPRGS------PNARSQ-----PSKTLFVKGLSEDTT 209
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 210 EETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 251
Score = 160 (61.4 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 45/137 (32%), Positives = 68/137 (49%)
Query: 35 FKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR--DP 92
F+ ++V ++ G+S Y ++ F S DA A+ N ++ G+ +R+ P
Sbjct: 131 FEKATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP 189
Query: 93 DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEES 152
+AR LFVK L E L+E F G++ + V E G SKG GFV F +EE
Sbjct: 190 NARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEED 247
Query: 153 ANAAIENL-NGTTVGDK 168
A AA E + +G G+K
Sbjct: 248 AKAAKEAMEDGEIDGNK 264
Score = 67 (28.6 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 23 VTDGELFDAFSEFKSLASVR-VCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGK 81
VT EL + F + A +R V KD G+S Y+ F + DA + E K T++ G+
Sbjct: 5 VTQDELKEVFED---AAEIRLVSKD---GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGR 58
Query: 82 MLRISWS 88
+ + ++
Sbjct: 59 SISLYYT 65
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 171 (65.3 bits), Expect = 7.1e-22, Sum P(2) = 7.1e-22
Identities = 52/194 (26%), Positives = 97/194 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED-GKSKGHGFVQFETEESANAAIENL 160
LFV + +S + ++ +F N NI S + ++ + +G FV + E A+ AIE L
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQL 64
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASL 220
+ + + + +K +D A+K LF+ L EE + E F G + +
Sbjct: 65 HNSKKF-QGVLNNLQVKYADSEQEKLASK---LFVGMLPRSYEEEQIRELFEPHGVVEDI 120
Query: 221 LIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVI-GSK----VLYA--ARAQKKAERE 273
I R N S+G GF+ FDN + A A+ +NG + GS V +A + +KK +++
Sbjct: 121 CILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEKDKKKKQKQ 180
Query: 274 QILRHQFEEKRKER 287
Q ++ Q +++++++
Sbjct: 181 QQIQIQMQQRQQQQ 194
Score = 167 (63.8 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 43/150 (28%), Positives = 76/150 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE-V 72
L+VG + + E+ + F+ ++ SV + K+ TT +V+ S +A RAIE +
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQL 64
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N + G + + D + K + LFV L S + +++E+F+ G + +
Sbjct: 65 HNSKKFQGVLNNLQVKYADSEQEKLA-SKLFVGMLPRSYEEEQIRELFEPHGVVEDICIL 123
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNG 162
+ +SKG GF++F+ ESA +AI LNG
Sbjct: 124 RGPNSESKGCGFIKFDNRESALSAIATLNG 153
Score = 163 (62.4 bits), Expect = 7.1e-22, Sum P(2) = 7.1e-22
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 284 RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFS 342
+K + + +GSN++V NI + +D +L F Q G + SAKV D+ G++KGFGFV +
Sbjct: 393 KKNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYD 452
Query: 343 SPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+P A+ A++ HG M+ K L V++ Q
Sbjct: 453 NPASANLAISNLHGQMMAGKKLKVSLKQ 480
Score = 136 (52.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 51/203 (25%), Positives = 89/203 (43%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASL-LIARDENGTSRGFGFVNFDNPDDARRALE 249
T LF+ + EE + F+ I S+ LI +G FV+ + ++A RA+E
Sbjct: 3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
++ S VL + K A+ EQ E++ S ++V + +E+
Sbjct: 63 QLHNSKKFQGVLNNLQV-KYADSEQ-----------EKL----ASKLFVGMLPRSYEEEQ 106
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP--LYVA 367
++ F G + ++R +KG GF+ F + E A A+ T +G L P L V
Sbjct: 107 IRELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVK 166
Query: 368 IA-----QRKEDRQAHLQLQYAQ 385
A ++K+ +Q +Q+Q Q
Sbjct: 167 FADTEKDKKKKQKQQQIQIQMQQ 189
Score = 132 (51.5 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALE 249
+NLF+ N+ + ++ L+ F ++G + S + D+N G S+GFGFV++DNP A A+
Sbjct: 403 SNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAIS 462
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQ 274
++G ++ K L + Q + Q
Sbjct: 463 NLHGQMMAGKKLKVSLKQTSGQGSQ 487
Score = 131 (51.2 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED-GKSKGHGFVQFETEESANAAIE 158
+NLFV N+ + L +FQ +G ++S KV ++ G SKG GFV ++ SAN AI
Sbjct: 403 SNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAIS 462
Query: 159 NLNGTTVGDKRIYV 172
NL+G + K++ V
Sbjct: 463 NLHGQMMAGKKLKV 476
Score = 51 (23.0 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 17/87 (19%), Positives = 38/87 (43%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+ L+VG L + ++ + F + + + + + C G++ F + A+ AI
Sbjct: 91 SKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSESKGC-GFIKFDNRESALSAIA 149
Query: 72 VKNHTQLHGKM--LRISWSCRDPDARK 96
N +L G L + ++ + D +K
Sbjct: 150 TLNGMKLDGSPNPLVVKFADTEKDKKK 176
Score = 41 (19.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 506 NGRIRELNKGSGVSLGTFNSGGVMARKPDMLNG 538
NG + G +G N GG M K + G
Sbjct: 367 NGMGGPMGNGMNNGMGGMNQGGPMGNKKNQSVG 399
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 267 (99.0 bits), Expect = 7.4e-22, P = 7.4e-22
Identities = 87/303 (28%), Positives = 148/303 (48%)
Query: 55 YGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDN 113
+GYV+F S D +A+E+ ++ G +++ + D++K A L KNL +
Sbjct: 3 FGYVDFESAEDLEKALELTG-LKVFGNEIKLE-KPKGKDSKKDRDARTLLAKNLPYKVTQ 60
Query: 114 VRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI--- 170
L+E+F++ + ++ S+DGKSKG +++F+TE A +E GT + + I
Sbjct: 61 DELKEVFED---AVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLY 116
Query: 171 YVGRFIKKSD-RVLPSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN 227
Y G + D R + + + L + NL TEE L E F K + + +++N
Sbjct: 117 YTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQN 173
Query: 228 GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKER 287
G S+G+ F+ F + +DA+ AL + N I + A R + + R R +
Sbjct: 174 GKSKGYAFIEFASFEDAKEALNSCNKREIEGR---AIRLELQGPRGS------PNARSQ- 223
Query: 288 ILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEA 347
++VK + ++ T+E LK F G+I + V E G +KGFGFV F+S E+A
Sbjct: 224 ----PSKTLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDA 277
Query: 348 SKA 350
A
Sbjct: 278 KAA 280
Score = 257 (95.5 bits), Expect = 4.8e-20, P = 4.8e-20
Identities = 82/261 (31%), Positives = 136/261 (52%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVR-VCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L +L VT EL + F + +R V KD G+S Y+ F + DA + +E
Sbjct: 48 TLLAKNLPYKVTQDELKEVFED---AVEIRLVSKD---GKSKGIAYIEFKTEADAEKTLE 101
Query: 72 VKNHTQLHGKMLRISWSC---RDPDARK------SGVAN-LFVKNLIESIDNVRLQEMFQ 121
K T++ G+ + + ++ ++ D R SG + L + NL S LQE+F+
Sbjct: 102 EKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFE 161
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
I KV +++GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 162 KATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI---RLELQGPR 215
Query: 182 VLPSPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
P+ ++ + LF+K L + TEE L E F G I + ++ E G+S+GFGFV+F++
Sbjct: 216 GSPNARSQPSKTLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNS 273
Query: 241 PDDARRALEAM-NGSVIGSKV 260
+DA+ A EAM +G + G+KV
Sbjct: 274 EEDAKAAKEAMEDGEIDGNKV 294
Score = 138 (53.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 42/161 (26%), Positives = 76/161 (47%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L KNL VT++ L E F +I L+++D G S+G ++ F DA + LE
Sbjct: 49 LLAKNLPYKVTQDELKEVFEDAVEIR--LVSKD--GKSKGIAYIEFKTEADAEKTLEEKQ 104
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ I + + +K + + K + + + N+ T+E L+
Sbjct: 105 GTEIDGRSISLYYTGEKGQNQDF------RGGKNSTWSGESKTLVLSNLAYSATEETLQE 158
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + T KV +++ G +KG+ F+ F+S E+A +A+N+
Sbjct: 159 VFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 196
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 206 (77.6 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 61/201 (30%), Positives = 102/201 (50%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN--GT--SRGFGFVNFDNPDDARRAL 248
LF+KNL+ TEE L FSK G + S I++ +N G S GFGFV + P+ A++AL
Sbjct: 737 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 796
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ + G V+ L R ++A + ++K+ K S + V+NI
Sbjct: 797 KQLQGHVVDGHKL-EVRISERATKPA----PTATRKKQVARKQTTSKILVRNIPFQADSR 851
Query: 309 ELKAHFSQCGTITSAKVMRDEKGI--NKGFGFVCFSSPEEASKAVNTF-HGYMLHRKPLY 365
E++ FS G + + ++ + G ++GFGFV F + ++A +A N H L+ + L
Sbjct: 852 EIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNALCHSTHLYGRRLV 911
Query: 366 VAIAQRKEDRQAHLQLQYAQH 386
+ A + QA L+ + A+H
Sbjct: 912 LEWADSEVTLQA-LRRKTAEH 931
Score = 182 (69.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 58/205 (28%), Positives = 102/205 (49%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED--GK--SKGHGFVQFETEESANAAI 157
LF+KNL S L+ +F G + SC ++ ++ G S G GFV+++ E A A+
Sbjct: 737 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 796
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSP------AAKYTN--LFMKNLDSDVTEEHLVE 209
+ L G V ++ V R +++ + P+ A K T + ++N+ + E
Sbjct: 797 KQLQGHVVDGHKLEV-RISERATKPAPTATRKKQVARKQTTSKILVRNIPFQADSREIRE 855
Query: 210 KFSKFGKIASLLIARDENGTS--RGFGFVNFDNPDDARRALEAMNGS--VIGSKVL--YA 263
FS FG++ ++ + + GT RGFGFV+F DA+RA A+ S + G +++ +A
Sbjct: 856 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNALCHSTHLYGRRLVLEWA 915
Query: 264 -ARAQKKAEREQILRHQFEEKRKER 287
+ +A R + H E +K+R
Sbjct: 916 DSEVTLQALRRKTAEHFHEPPKKKR 940
Score = 150 (57.9 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 53/191 (27%), Positives = 89/191 (46%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
P +T + ++ +VTE++++E + +A + I R+ +G G+ FV+F + ++ +
Sbjct: 291 PTTPHT-VKLRGAPFNVTEKNVMEFLAPLKPVA-IRIVRNAHGNKTGYVFVDFSSEEEVK 348
Query: 246 RAL----EAMNG---SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
+AL E M G V K + A+A K + E +E L G ++V
Sbjct: 349 KALQCNREYMGGRYIEVFREKSIPTAKAPPKNSTKAWQGRTLGEHEEEEDLADSG-RLFV 407
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN-KGFGFVCFSSPEEASKAV-----N 352
+N+ ++E+L+ FS+ G ++ D KGF FV F PE A KA
Sbjct: 408 RNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ 467
Query: 353 TFHGYMLHRKP 363
F G MLH P
Sbjct: 468 VFQGRMLHVLP 478
Score = 138 (53.6 bits), Expect = 8.1e-20, Sum P(3) = 8.1e-20
Identities = 30/95 (31%), Positives = 54/95 (56%)
Query: 281 EEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMR--DEKG--INKGF 336
EE+ +E G +++KN++ T+E LK FS+ G + S + + ++ G ++ GF
Sbjct: 722 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGF 781
Query: 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
GFV + PE+A KA+ G+++ L V I++R
Sbjct: 782 GFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISER 816
Score = 130 (50.8 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIE 158
++ L VKNL + R +++F FG + C + ++DGK + GF+ F++EE A A+
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALN 60
Query: 159 NLNGTTVGDKRIYVGRFIKK-SDRVLPSPAAKY 190
+ N + + RI V F K D P +K+
Sbjct: 61 HFNKSFIDTSRITV-EFCKSFGDPTKPRAWSKH 92
Score = 102 (41.0 bits), Expect = 8.1e-20, Sum P(3) = 8.1e-20
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF++NL +EE L + FSK+G ++ L D +GF FV F P+ A +A +
Sbjct: 405 LFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 464
Query: 252 NGSVIGSKVLYAARAQKKAEREQ 274
+G V ++L+ + K E +
Sbjct: 465 DGQVFQGRMLHVLPSTIKKEASE 487
Score = 99 (39.9 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
+ L +KNL + + EE + F+ FG + + ++G R FGF+ F + ++A+ AL
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 251 MNGSVI 256
N S I
Sbjct: 62 FNKSFI 67
Score = 91 (37.1 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 59/258 (22%), Positives = 102/258 (39%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+V +L ++ +L FS++ L+ + DS T + + +V F+ P A++A
Sbjct: 405 LFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 464
Query: 74 NHTQLHGKMLRISWSCRDPDARKSG--VANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+ G+ML + S +A + + K ES D N+ +
Sbjct: 465 DGQVFQGRMLHVLPSTIKKEASEDTDTPGSSSYKKKKESKDKASSSSS-HNWNTLFMGPN 523
Query: 132 ATSEDGKSKGHGFVQ--FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS---P 186
A ++ K + F+ E + A+ G T + V RF+ + L S
Sbjct: 524 AVADAIAQKYNSTKSQVFDHETKGSVAVRVALGETQLVQE--VRRFLLDNGVSLDSFSQA 581
Query: 187 AAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
AA+ T + KNL + L E F +FG + +L+ E G + V F +A
Sbjct: 582 AAERSKTVILAKNLPAGTQAAELQETFGRFGSLGRVLLP--EGGVT---AIVEFLEALEA 636
Query: 245 RRALEAMNGSVIGSKVLY 262
R+A + S LY
Sbjct: 637 RKAFRHLAYSKFHHVPLY 654
Score = 67 (28.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+VT++ + + + + +++R+ G G+ FV FSS EE KA+ YM R
Sbjct: 305 NVTEKNVMEFLAPLKPV-AIRIVRNAHGNKTGYVFVDFSSEEEVKKALQCNREYMGGR-- 361
Query: 364 LYVAIAQRK 372
Y+ + + K
Sbjct: 362 -YIEVFREK 369
Score = 65 (27.9 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
++ ++ + G G+ FV F +EE A++ N +G + Y+ F +KS +P
Sbjct: 321 VAIRIVRNAHGNKTGYVFVDFSSEEEVKKALQ-CNREYMGGR--YIEVFREKSIPTAKAP 377
Query: 187 AAKYTNLFM-KNLDSDVTEEHLVE 209
T + + L EE L +
Sbjct: 378 PKNSTKAWQGRTLGEHEEEEDLAD 401
Score = 62 (26.9 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
Identities = 17/77 (22%), Positives = 41/77 (53%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TTP ++ + +VT+ + + + K +A +R+ +++ G T Y +V+F S + +
Sbjct: 292 TTPHTVKLRGAPFNVTEKNVMEFLAPLKPVA-IRIVRNAH-GNKTGYVFVDFSSEEEVKK 349
Query: 69 AIEVKNHTQLHGKMLRI 85
A++ N + G+ + +
Sbjct: 350 ALQC-NREYMGGRYIEV 365
Score = 44 (20.5 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 27 ELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86
EL + F F SL V + + T V FL +A +A +++ H L +
Sbjct: 603 ELQETFGRFGSLGRVLLPEGGVTA------IVEFLEALEARKAFRHLAYSKFHHVPLYLE 656
Query: 87 WS 88
W+
Sbjct: 657 WA 658
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 258 (95.9 bits), Expect = 2.3e-21, P = 2.3e-21
Identities = 64/126 (50%), Positives = 78/126 (61%)
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQ
Sbjct: 2 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSLYYTT------PPGIVS 415
RKE+RQAHL QY Q MA + VI PSGY ++ T PP ++
Sbjct: 61 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 120
Query: 416 QVPPRP 421
Q+ P P
Sbjct: 121 QLRPSP 126
Score = 162 (62.1 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 209 EKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268
++FS FG I S + E G S+GFGFV F +P++A +A+ MNG ++ +K LY A AQ+
Sbjct: 3 KEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 61
Query: 269 KAEREQILRHQFEEK 283
K ER+ L +Q+ ++
Sbjct: 62 KEERQAHLTNQYMQR 76
Score = 124 (48.7 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 32/81 (39%), Positives = 42/81 (51%)
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV +K
Sbjct: 5 FSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 63
Query: 180 DRVLPSPAAKYTNLFMKNLDS 200
+R A TN +M+ + S
Sbjct: 64 ER-----QAHLTNQYMQRMAS 79
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 237 (88.5 bits), Expect = 4.4e-19, P = 4.4e-19
Identities = 61/174 (35%), Positives = 97/174 (55%)
Query: 57 YVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRL 116
YV L P D A+ + + G +L I CRD R+S + +V N + D R
Sbjct: 9 YVGDLHP-DVTEAMLYEKFSPA-GPILSIR-VCRDMITRRS-LGYAYV-NFQQPADAERA 63
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
+ NF ++I K ++ SKG+GFV FET+E+A AIE +NG + D++++VGRF
Sbjct: 64 LDTM-NF-DVIKGKPVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 121
Query: 177 KKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG 228
+ +R L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G
Sbjct: 122 SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 187 (70.9 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 6 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 65
Query: 72 VKNHTQLHGK 81
N + GK
Sbjct: 66 TMNFDVIKGK 75
Score = 185 (70.2 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 46/135 (34%), Positives = 70/135 (51%)
Query: 197 NLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVI 256
N E ++ + F I + DENG S+G+GFV+F+ + A RA+E MNG ++
Sbjct: 53 NFQQPADAERALDTMN-FDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 110
Query: 257 GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQ 316
+ ++ R + + ERE + + KE +NVY+KN +D+ DE LK F +
Sbjct: 111 NDRKVFVGRFKSRKEREA----ELGARAKEF------TNVYIKNFGEDMDDERLKDLFGK 160
Query: 317 CGTITSAKVMRDEKG 331
G S KVM DE G
Sbjct: 161 FGPALSVKVMTDESG 175
Score = 138 (53.6 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 32/69 (46%), Positives = 41/69 (59%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF P DA RAL+
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 251 MNGSVIGSK 259
MN VI K
Sbjct: 67 MNFDVIKGK 75
Score = 117 (46.2 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 35/101 (34%), Positives = 55/101 (54%)
Query: 43 VCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI----SWSCRDPD--ARK 96
VC ++ G S YG+V+F + A RAIE N L+ + + + S R+ + AR
Sbjct: 78 VCDEN--G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 134
Query: 97 SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDG 137
N+++KN E +D+ RL+++F FG +S KV T E G
Sbjct: 135 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 96 (38.9 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 320 ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
I V+ DE G +KG+GFV F + E A +A+ +G +L+ + ++V + +++R+A L
Sbjct: 72 IKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 130
Score = 75 (31.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S +V +S G+ +V F+ A A+
Sbjct: 5 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 64
Query: 158 ENLNGTTVGDKRI 170
+ +N + K +
Sbjct: 65 DTMNFDVIKGKPV 77
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 203 (76.5 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 60/201 (29%), Positives = 102/201 (50%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGT----SRGFGFVNFDNPDDARRAL 248
LF+KNL+ TEE L FSK G + S I++ +N S GFGFV + P+ A++AL
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ + G V+ S L R ++A + + ++K+ K S + V+NI
Sbjct: 792 KQLQGHVVDSHKL-EVRISERATKPALT----STRKKQVPRKQTTSKILVRNIPFQADKR 846
Query: 309 ELKAHFSQCGTITSAKVMRDEKGI--NKGFGFVCFSSPEEASKAVNTF-HGYMLHRKPLY 365
E++ FS G + + ++ + G ++GFGFV F + ++A +A H L+ + L
Sbjct: 847 EIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQALCHSTHLYGRRLV 906
Query: 366 VAIAQRKEDRQAHLQLQYAQH 386
+ A + QA L+ + A+H
Sbjct: 907 LEWADSEVSLQA-LRRKTAEH 926
Score = 187 (70.9 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 64/236 (27%), Positives = 116/236 (49%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED--GK--SKGHGFVQFETEESANAAI 157
LF+KNL S L+ +F G + SC ++ ++ G+ S G GFV++ E A A+
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 158 ENLNGTTVGDKRIYVG---RFIKK---SDRVLPSPAAKYTN-LFMKNLDSDVTEEHLVEK 210
+ L G V ++ V R K S R P + T+ + ++N+ + + E
Sbjct: 792 KQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQEL 851
Query: 211 FSKFGKIASLLIARDENGTS--RGFGFVNFDNPDDARRALEAMNGS--VIGSKVL--YA- 263
FS FG++ ++ + + GT RGFGFV+F DA+RA +A+ S + G +++ +A
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQALCHSTHLYGRRLVLEWAD 911
Query: 264 ARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT 319
+ +A R + H E +K+R + + ++ ++D +D E + + GT
Sbjct: 912 SEVSLQALRRKTAEHFHEPPKKKRSVVL---DEILEQLEDSESDSEEQTLQLRAGT 964
Score = 143 (55.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 63/240 (26%), Positives = 103/240 (42%)
Query: 144 FVQFETEESANAA-IENLN-GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSD 201
F Q E S ++NL GT V + + GRF +LP F++ L++
Sbjct: 579 FSQAAAERSKTVILVKNLPAGTLVAELQETFGRFGSLGRVLLPEGGITAIVEFLEPLEAR 638
Query: 202 VTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF--DNP----DDARRALEAMNGSV 255
HL +SKF L S D P ++ R E N +
Sbjct: 639 KAFRHLA--YSKFHHTPLYLEWAPVGVFSSSAPQTKEPQDPPAGPAEEDRAEPETYNETP 696
Query: 256 IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS 315
G K A+ +AE + EE+ +E G +++KN++ T+E LK FS
Sbjct: 697 EGEKP-----AEGRAEDCPAKVEEEEEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFS 751
Query: 316 QCGTITSAKVMR--DEKG--INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+ G + S + + ++ G ++ GFGFV + PE+A KA+ G+++ L V I++R
Sbjct: 752 KAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISER 811
Score = 139 (54.0 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 49/192 (25%), Positives = 91/192 (47%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
P YT + ++ +VTE++++E + +A + I R+ +G G+ FV+F + ++ +
Sbjct: 293 PTTPYT-VKLRGAPFNVTEKNVLEFLAPLRPVA-IRIVRNAHGNKTGYIFVDFRSEEEIK 350
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE--------EKRKERILKYKGSNVY 297
+AL+ N +G + + R + + L++ + E +E L G ++
Sbjct: 351 QALKC-NREYMGGRYIEIFREKNVPTTKGPLKNSAKPWQGRTLGENEEEEDLADSG-RLF 408
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN-KGFGFVCFSSPEEASKAV----- 351
++N+ T+E+L+ FS+ G ++ D KGF FV F PE A +A
Sbjct: 409 IRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAYAEVDG 468
Query: 352 NTFHGYMLHRKP 363
F G MLH P
Sbjct: 469 QVFQGRMLHVLP 480
Score = 131 (51.2 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 35/127 (27%), Positives = 65/127 (51%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIE 158
++ L VKNL + R +++F +FG + C + ++DGK + GF+ F++EE A +A+
Sbjct: 1 MSRLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALN 60
Query: 159 NLNGTTVGDKRIYVGRFIKK-SDRVLPSPAAKYTNLFMKNLDSDVTEEHLV---EKFSKF 214
+ N + + RI V F K D P +K+ ++ + ++ + +K K
Sbjct: 61 HFNRSFIDTSRITV-EFCKSFGDPTKPRAWSKHAQKTKQSKNPSKDKDFVPTEPKKDDKT 119
Query: 215 GKIASLL 221
K+AS L
Sbjct: 120 KKVASEL 126
Score = 52 (23.4 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 27 ELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86
EL + F F SL V + + T V FL P +A +A +++ H L +
Sbjct: 604 ELQETFGRFGSLGRVLLPEGGITA------IVEFLEPLEARKAFRHLAYSKFHHTPLYLE 657
Query: 87 WS 88
W+
Sbjct: 658 WA 659
Score = 50 (22.7 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 15/72 (20%), Positives = 35/72 (48%)
Query: 22 DVTDGELFDAFSE-FKSLASVRVC--KDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQL 78
++ +G D F + F S ++ C K + G+ +G++ F S +A+ A+ N + +
Sbjct: 8 NLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNHFNRSFI 67
Query: 79 HGKMLRISWSCR 90
+ + + C+
Sbjct: 68 DTSRITVEF-CK 78
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 205 (77.2 bits), Expect = 7.4e-21, Sum P(2) = 7.4e-21
Identities = 61/201 (30%), Positives = 101/201 (50%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN--GT--SRGFGFVNFDNPDDARRAL 248
LF+KNL+ TEE L FSK G I S I++ +N G S GFGFV + P+ A++AL
Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ + G + L R ++A + + ++K+ K S + V+NI
Sbjct: 784 KQLQGHTVDGHKL-EVRISERATKPALT----STRKKQVPKKQTTSKILVRNIPFQANQR 838
Query: 309 ELKAHFSQCGTITSAKVMRDEKGI--NKGFGFVCFSSPEEASKAVNTF-HGYMLHRKPLY 365
E++ FS G + + ++ + G ++GFGFV F + ++A KA N H L+ + L
Sbjct: 839 EIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 898
Query: 366 VAIAQRKEDRQAHLQLQYAQH 386
+ A + Q L+ + A+H
Sbjct: 899 LEWADSEVTVQT-LRRKTARH 918
Score = 187 (70.9 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 66/226 (29%), Positives = 110/226 (48%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK----SKGHGFVQFETEESANAAI 157
LF+KNL S L+ +F G I SC ++ ++ S G GFV+++ E A A+
Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783
Query: 158 ENLNGTTVGDKRIYVG---RFIKK---SDRVLPSPAAKYTN-LFMKNLDSDVTEEHLVEK 210
+ L G TV ++ V R K S R P + T+ + ++N+ + + E
Sbjct: 784 KQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIREL 843
Query: 211 FSKFGKIASLLIARDENGTS--RGFGFVNFDNPDDARRALEAMNGS--VIGSK-VLYAAR 265
FS FG++ ++ + + GT RGFGFV+F DA++A A+ S + G + VL A
Sbjct: 844 FSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 903
Query: 266 AQKKAE--REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
++ + R + RH E +K+R G + + D+D +D E
Sbjct: 904 SEVTVQTLRRKTARHFQEPPKKKRSAVLDG--ILEQLEDEDNSDGE 947
Score = 140 (54.3 bits), Expect = 9.0e-14, Sum P(2) = 9.0e-14
Identities = 53/191 (27%), Positives = 86/191 (45%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
P YT + ++ +VTE++++E + +A + I R+ +G G+ FV+ + ++ +
Sbjct: 289 PTTPYT-VKLRGAPFNVTEKNVIEFLAPLKPVA-IRIVRNAHGNKTGYVFVDLSSEEEVK 346
Query: 246 RALEA----MNG---SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
+AL+ M G V K AR K+ R E +E L G ++V
Sbjct: 347 KALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGR-TLGENEEEEDLADSG-RLFV 404
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN-KGFGFVCFSSPEEASKAV-----N 352
+N+ ++E+L+ FS G ++ D KGF FV F PE A KA
Sbjct: 405 RNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ 464
Query: 353 TFHGYMLHRKP 363
F G MLH P
Sbjct: 465 VFQGRMLHVLP 475
Score = 139 (54.0 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 60/238 (25%), Positives = 99/238 (41%)
Query: 144 FVQFETEESANAAI-ENLN-GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSD 201
F Q E S + +NL GT + + RF +LP F++ L++
Sbjct: 574 FSQAAAERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEAR 633
Query: 202 VTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
HL +SKF + L E FG D++ A V VL
Sbjct: 634 KAFRHLA--YSKFHHVPLYL----EWAPIGVFGAA--PQKKDSQHEQPAEKAEVEQETVL 685
Query: 262 YAARAQKKAEREQI----LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQC 317
+ E + + + EE+ +E G +++KN++ T+E LK FS+
Sbjct: 686 DPEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKV 745
Query: 318 GTITSAKVMR--DEKGI--NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
G I S + + ++ G+ + GFGFV + PE+A KA+ G+ + L V I++R
Sbjct: 746 GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 803
Score = 126 (49.4 bits), Expect = 7.4e-21, Sum P(2) = 7.4e-21
Identities = 29/93 (31%), Positives = 50/93 (53%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIE 158
++ L VKNL + R +++F FG + C + ++DGK + GF+ F++EE A AA+
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALN 60
Query: 159 NLNGTTVGDKRIYVGRFIKK-SDRVLPSPAAKY 190
+ + + + RI V F K D P +K+
Sbjct: 61 HFHRSFIDTTRITV-EFCKSFGDPSKPRAWSKH 92
Score = 54 (24.1 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
++ ++ + G G+ FV +EE A++ N +G + Y+ F +K P
Sbjct: 319 VAIRIVRNAHGNKTGYVFVDLSSEEEVKKALK-CNRDYMGGR--YIEVFREKQAPTARGP 375
Query: 187 AAKYTNLFMKNLDSDVTEEHLVE 209
T + L + EE L +
Sbjct: 376 PKSTTPWQGRTLGENEEEEDLAD 398
Score = 40 (19.1 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKS 97
L P A++ E+ + L KM+R S D D S
Sbjct: 198 LQPKAAVQK-ELSDMDYLKSKMVRAEVSSEDEDEEDS 233
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 265 (98.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 55/170 (32%), Positives = 98/170 (57%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LY+ +L V + L + F + ++ +V + +D G YG+V + ++ A
Sbjct: 20 ATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAAN 79
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+ N T+L GK LR + + +D + G ANLF+ NL + +D L ++F +FG I++ KV
Sbjct: 80 ILNMTKLFGKALRCNKATQDKRSFDVG-ANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKV 138
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+ED SKGHGF+ ++ ES++ AIEN+N + +K++++ KK +
Sbjct: 139 MRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSK 188
Score = 231 (86.4 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 64/206 (31%), Positives = 107/206 (51%)
Query: 96 KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESAN 154
++ A L++ NL +D L E+F GN+ + + + +G G+GFV++E E
Sbjct: 16 RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECE 75
Query: 155 AAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKF 214
A LN T + K + + + R A NLF+ NLD +V E+ L + FS F
Sbjct: 76 YAANILNMTKLFGKALRCNK-ATQDKRSFDVGA----NLFIGNLDDEVDEKMLFDIFSSF 130
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
G+I ++ + R+E+ TS+G GF+++DN + + A+E MN I +K ++ + A KK + +
Sbjct: 131 GQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGE 190
Query: 275 ILRHQFEEKRKERILKYKGSNVYVKN 300
RH +R I K N+Y N
Sbjct: 191 --RHGTAAERF--IAANKALNLYPLN 212
Score = 156 (60.0 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 49/183 (26%), Positives = 90/183 (49%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NLD+ V EE L E F + G + ++ I RD+ G+ F + A N
Sbjct: 22 LYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHA-GY-GFVEYEYEYECEYAAN 79
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
++ L+ KA R ++KR + G+N+++ N+DD+V ++ L
Sbjct: 80 --ILNMTKLFG-----KALR---CNKATQDKRSFDV----GANLFIGNLDDEVDEKMLFD 125
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS G I + KVMR+E +KG GF+ + + E + A+ + + K ++++ A +K
Sbjct: 126 IFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKK 185
Query: 373 EDR 375
+ +
Sbjct: 186 DSK 188
Score = 48 (22.0 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 399 PSGYPSLYYTTPPGIVSQVPPR-PGLMYQPLGLRTGWRANGFVPPTRP 445
P+ P+L PPG +PP P + P + G+ N +PP P
Sbjct: 418 PNFPPTLPPNFPPGFPPNLPPNFPPTL--PPNIPPGFPPN--IPPNLP 461
Score = 47 (21.6 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 392 GSSANVIPSGYPSLYYTTPPGIVSQVPP 419
G N+ P+ P+L PPG +PP
Sbjct: 431 GFPPNLPPNFPPTLPPNIPPGFPPNIPP 458
Score = 45 (20.9 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 21/62 (33%), Positives = 26/62 (41%)
Query: 396 NVIPSGYPSLYYTTPPGIVSQVPPR--PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP 453
N P+ P+L T PP + +PP P L P L N +PPT P LP
Sbjct: 343 NFPPNLPPNLPPTLPPTLPPTLPPTLPPNL---PPTLPPTLPPN--LPPTLPPTLPPNLP 397
Query: 454 VN 455
N
Sbjct: 398 PN 399
Score = 42 (19.8 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 396 NVIPSGYPSLYYTTPPGIVSQVPPR-PGLMYQPLGLRTGWRAN---GFVPPTRPAFQVSP 451
N+ P+ P+ T PP +PP P + P G+ N F PPT P + P
Sbjct: 395 NLPPNLPPNFPPTLPPNFPPTLPPNFPPTL--PPNFPPGFPPNLPPNF-PPTLPP-NIPP 450
Query: 452 -LPVN 455
P N
Sbjct: 451 GFPPN 455
Score = 40 (19.1 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 394 SANVIPSGYPSLYYTTPPGIVSQVPP 419
S+N+ P+ P+L PP +PP
Sbjct: 325 SSNLPPNIPPNLPPNFPPNFPPNLPP 350
Score = 39 (18.8 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 399 PSGYPSLYYTTPPGIVSQVPP 419
P+ P+L T PP + +PP
Sbjct: 382 PNLPPTLPPTLPPNLPPNLPP 402
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 265 (98.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 55/170 (32%), Positives = 98/170 (57%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LY+ +L V + L + F + ++ +V + +D G YG+V + ++ A
Sbjct: 20 ATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAAN 79
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+ N T+L GK LR + + +D + G ANLF+ NL + +D L ++F +FG I++ KV
Sbjct: 80 ILNMTKLFGKALRCNKATQDKRSFDVG-ANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKV 138
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+ED SKGHGF+ ++ ES++ AIEN+N + +K++++ KK +
Sbjct: 139 MRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSK 188
Score = 231 (86.4 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 64/206 (31%), Positives = 107/206 (51%)
Query: 96 KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESAN 154
++ A L++ NL +D L E+F GN+ + + + +G G+GFV++E E
Sbjct: 16 RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECE 75
Query: 155 AAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKF 214
A LN T + K + + + R A NLF+ NLD +V E+ L + FS F
Sbjct: 76 YAANILNMTKLFGKALRCNK-ATQDKRSFDVGA----NLFIGNLDDEVDEKMLFDIFSSF 130
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
G+I ++ + R+E+ TS+G GF+++DN + + A+E MN I +K ++ + A KK + +
Sbjct: 131 GQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGE 190
Query: 275 ILRHQFEEKRKERILKYKGSNVYVKN 300
RH +R I K N+Y N
Sbjct: 191 --RHGTAAERF--IAANKALNLYPLN 212
Score = 156 (60.0 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 49/183 (26%), Positives = 90/183 (49%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NLD+ V EE L E F + G + ++ I RD+ G+ F + A N
Sbjct: 22 LYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHA-GY-GFVEYEYEYECEYAAN 79
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
++ L+ KA R ++KR + G+N+++ N+DD+V ++ L
Sbjct: 80 --ILNMTKLFG-----KALR---CNKATQDKRSFDV----GANLFIGNLDDEVDEKMLFD 125
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS G I + KVMR+E +KG GF+ + + E + A+ + + K ++++ A +K
Sbjct: 126 IFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKK 185
Query: 373 EDR 375
+ +
Sbjct: 186 DSK 188
Score = 48 (22.0 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 399 PSGYPSLYYTTPPGIVSQVPPR-PGLMYQPLGLRTGWRANGFVPPTRP 445
P+ P+L PPG +PP P + P + G+ N +PP P
Sbjct: 418 PNFPPTLPPNFPPGFPPNLPPNFPPTL--PPNIPPGFPPN--IPPNLP 461
Score = 47 (21.6 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 392 GSSANVIPSGYPSLYYTTPPGIVSQVPP 419
G N+ P+ P+L PPG +PP
Sbjct: 431 GFPPNLPPNFPPTLPPNIPPGFPPNIPP 458
Score = 45 (20.9 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 21/62 (33%), Positives = 26/62 (41%)
Query: 396 NVIPSGYPSLYYTTPPGIVSQVPPR--PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP 453
N P+ P+L T PP + +PP P L P L N +PPT P LP
Sbjct: 343 NFPPNLPPNLPPTLPPTLPPTLPPTLPPNL---PPTLPPTLPPN--LPPTLPPTLPPNLP 397
Query: 454 VN 455
N
Sbjct: 398 PN 399
Score = 42 (19.8 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 396 NVIPSGYPSLYYTTPPGIVSQVPPR-PGLMYQPLGLRTGWRAN---GFVPPTRPAFQVSP 451
N+ P+ P+ T PP +PP P + P G+ N F PPT P + P
Sbjct: 395 NLPPNLPPNFPPTLPPNFPPTLPPNFPPTL--PPNFPPGFPPNLPPNF-PPTLPP-NIPP 450
Query: 452 -LPVN 455
P N
Sbjct: 451 GFPPN 455
Score = 40 (19.1 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 394 SANVIPSGYPSLYYTTPPGIVSQVPP 419
S+N+ P+ P+L PP +PP
Sbjct: 325 SSNLPPNIPPNLPPNFPPNFPPNLPP 350
Score = 39 (18.8 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 399 PSGYPSLYYTTPPGIVSQVPP 419
P+ P+L T PP + +PP
Sbjct: 382 PNLPPTLPPTLPPNLPPNLPP 402
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 196 (74.1 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 64/204 (31%), Positives = 104/204 (50%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN--GT--SRGFGFVNFDNPDDARRAL 248
LF+KNL+ D TEE L FSK G + S I++ +N G S GFGFV + P+ A++AL
Sbjct: 692 LFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQKAL 751
Query: 249 EAMNGSVI-GSK--VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+ + G V+ G K V + RA K A RH+ +R+ + ++V+
Sbjct: 752 KQLQGHVVDGHKLEVRISERATKSALNSG--RHKHSPRRQT------DTKIWVRVCPFQG 803
Query: 306 TDEELKAHFSQCGTITSAKVMRD--EKGINKGFGFVCFSSPEEASKAVNTF-HGYMLHRK 362
ELK F+ G + + ++ + G ++GFGFV F + ++A +A N H L+ +
Sbjct: 804 DSRELKEIFNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGR 863
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQH 386
L + A + A L+ + A+H
Sbjct: 864 RLVLEWADSEVSLPA-LRRKTAEH 886
Score = 158 (60.7 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 58/204 (28%), Positives = 96/204 (47%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED--GK--SKGHGFVQFETEESANAAI 157
LF+KNL L+ +F G + SC ++ ++ G S G GFV++ E A A+
Sbjct: 692 LFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQKAL 751
Query: 158 ENLNGTTVGDKRIYVG---RFIKK---SDRVLPSPAAKY-TNLFMKNLDSDVTEEHLVEK 210
+ L G V ++ V R K S R SP + T ++++ L E
Sbjct: 752 KQLQGHVVDGHKLEVRISERATKSALNSGRHKHSPRRQTDTKIWVRVCPFQGDSRELKEI 811
Query: 211 FSKFGKIASLLIARDENGTS--RGFGFVNFDNPDDARRALEAMNGS--VIGSKVL--YA- 263
F+ FG++ ++ + + GT RGFGFV+F DA+RA A+ S + G +++ +A
Sbjct: 812 FNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWAD 871
Query: 264 ARAQKKAEREQILRHQFEEKRKER 287
+ A R + H E +K+R
Sbjct: 872 SEVSLPALRRKTAEHFHEPPKKKR 895
Score = 144 (55.7 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 31/100 (31%), Positives = 57/100 (57%)
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMR--DEKG-- 331
+ + EE+ +E G +++KN++ D T+E LK FS+ G + S + + ++ G
Sbjct: 672 MEEEEEEEEEEEEESLPGCTLFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGAL 731
Query: 332 INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
++ GFGFV + PE+A KA+ G+++ L V I++R
Sbjct: 732 LSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISER 771
Score = 135 (52.6 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 50/175 (28%), Positives = 78/175 (44%)
Query: 216 KIASLLIARDENGTSRGFGFVNFDNPDDARRAL----EAMNG---SVIGSKVLYAARAQK 268
K ++ I R+ +G G+ FV+F + ++ R+AL E M G V + + A+A
Sbjct: 279 KPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNIPVAKAPL 338
Query: 269 KAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD 328
K + E +E L G ++V+N+ ++E+L+ FS+ G ++ D
Sbjct: 339 KNGAKPWQGRTLGEHEEEEDLADSG-RLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPID 397
Query: 329 EKGIN-KGFGFVCFSSPEEASKAV-----NTFHGYMLHRKPLYVAIAQRKEDRQA 377
KGF FV F PE A KA F G MLH P + + ED A
Sbjct: 398 SLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK-KEASEDANA 451
Score = 129 (50.5 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIE 158
++ L VKNL + R +++F FG + C + ++DGK + GF+ F++EE A A+
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALN 60
Query: 159 NLNGTTVGDKRIYVGRFIKK-SDRVLPSPAAKY 190
+ N + + RI V F K D P +K+
Sbjct: 61 HFNKSFIDTSRITV-EFCKAFGDPTKPRAWSKH 92
Score = 101 (40.6 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF++NL +EE L + FS++G ++ L D +GF FV F P+ A +A +
Sbjct: 365 LFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 424
Query: 252 NGSVIGSKVLYAARAQ-KKAEREQILRHQFEEKRKERILKYKGSN 295
+G V ++L+ + KK E + +K++ K K ++
Sbjct: 425 DGQVFQGRMLHVLPSTIKKEASEDANAPESSSYKKKKESKDKANS 469
Score = 99 (39.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
+ L +KNL + + EE + F+ FG + + ++G R FGF+ F + ++A+ AL
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 251 MNGSVI 256
N S I
Sbjct: 62 FNKSFI 67
Score = 69 (29.3 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 29/100 (29%), Positives = 43/100 (43%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSKGHGFVQFET 149
+ D SG LFV+NL + L+++F +G + S K KG FV F
Sbjct: 356 EEDLADSG--RLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMF 413
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
E A A ++G +++ GR + VLPS K
Sbjct: 414 PEHAVKAYAEVDG------QVFQGRML----HVLPSTIKK 443
Score = 68 (29.0 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+V +L ++ +L FS + ++ + DS T + + +V F+ P A++A
Sbjct: 365 LFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 424
Query: 74 NHTQLHGKMLRI 85
+ G+ML +
Sbjct: 425 DGQVFQGRMLHV 436
Score = 54 (24.1 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGR 174
++ ++ + G G+ FV F +EE A++ N +G + I V R
Sbjct: 281 VAIRIVRNAHGNKTGYVFVDFSSEEEVRKALK-CNREYMGGRYIEVFR 327
Score = 45 (20.9 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 10/46 (21%), Positives = 26/46 (56%)
Query: 40 SVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85
++R+ +++ G T Y +V+F S + +A++ N + G+ + +
Sbjct: 282 AIRIVRNAH-GNKTGYVFVDFSSEEEVRKALKC-NREYMGGRYIEV 325
Score = 40 (19.1 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 342 SSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
SS E +AVN G + + A AQ +DR+A
Sbjct: 231 SSEESEDEAVNCEEGSESEEEGSFAAPAQ--QDREA 264
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 242 (90.2 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 58/172 (33%), Positives = 98/172 (56%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVG L +++ L++ F + + +V V KD T YG++ + S DA AI+
Sbjct: 25 ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC-K 130
V N +LHGK +R++ + +D + G ANLF+ NL +D L + F FG I S K
Sbjct: 85 VLNMIKLHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143
Query: 131 VATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+ D G S+G GF+ +++ E+++AAIE++ G + +++I V KK +
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTK 195
Score = 210 (79.0 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 61/185 (32%), Positives = 97/185 (52%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A ++ A ++V L + L E+F G +++ V + +GF+++ +EE
Sbjct: 19 AERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEED 78
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
A+ AI+ LN + K I V + D+ A NLF+ NLD DV E+ L + FS
Sbjct: 79 ADYAIKVLNMIKLHGKPIRVNK--ASQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTFS 133
Query: 213 KFGKIASL-LIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK---VLYAARAQ 267
FG IAS I RD + G SRGFGF+++D+ + + A+E+M G + ++ V YA +
Sbjct: 134 AFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKD 193
Query: 268 KKAER 272
K ER
Sbjct: 194 TKGER 198
Score = 188 (71.2 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 68/267 (25%), Positives = 126/267 (47%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
+++ LD+ ++EE L E F + G + ++ + +D + +GF+ + + +DA A++ +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + K + R K ++ +K+ + G+N+++ N+D DV ++ L
Sbjct: 87 NMIKLHGKPI---RVNKASQ----------DKKSLDV----GANLFIGNLDPDVDEKLLY 129
Query: 312 AHFSQCGTITS-AKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
FS G I S K+MRD + G ++GFGF+ + S E + A+ + G L + + V+ A
Sbjct: 130 DTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVP--PRP---GLM 424
+K D + A+ + +A S +L+ PP QV PRP G M
Sbjct: 190 YKK-DTKGERHGTPAERLLAATNPTAQ--KSRPHTLFAMGPPSSAPQVNGLPRPFANGSM 246
Query: 425 YQPLGLRTGWRANGFVPPTRPAFQVSP 451
QP+ + + PP +Q P
Sbjct: 247 -QPVPIPAPRQPP---PPPPQVYQTQP 269
Score = 56 (24.8 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 399 PSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAF 447
P P +Y T PP SQ P + ++ P+ R G PP P F
Sbjct: 258 PPPPPQVYQTQPPSWPSQ-PQQHSMVPPPMQFRP---PQGMPPPPPPQF 302
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 258 (95.9 bits), Expect = 5.8e-20, P = 5.8e-20
Identities = 78/292 (26%), Positives = 136/292 (46%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + V + ++F G SCK+ T E + + FV+F A AA+ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT-EHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G + K + V S + + + ++F+ +L ++T E + F+ FGKI+
Sbjct: 70 GRKILGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR 127
Query: 222 IARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL---YAAR---AQKKAEREQ 274
+ +D G S+G+GFV+F N DA A+ M G +G + + +A R A K +
Sbjct: 128 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187
Query: 275 ILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK 334
+ +FE+ + K VY I +TD+ ++ FS G I +V + K
Sbjct: 188 TKQLRFEDVVNQS--SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----K 240
Query: 335 GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ-LQYAQ 385
G+ FV FS+ E A+ A+ + +G + + + D + Q + Y+Q
Sbjct: 241 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQ 292
Score = 216 (81.1 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 72/270 (26%), Positives = 122/270 (45%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ S ++ + T+ C+ V F DA A+
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCF--VEFYEHRDAAAAL 65
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESIDNVRLQEMFQNFGNII 127
N ++ GK ++++W+ P ++K +N +FV +L I ++ F FG I
Sbjct: 66 AAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKIS 124
Query: 128 SCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
+V GKSKG+GFV F + A AI ++ G +G ++I +K P+P
Sbjct: 125 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP----PAP 180
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENGT--------------SR 231
+ N + DV + + + + G IAS L + T +
Sbjct: 181 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK 240
Query: 232 GFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
G+ FV F + A A+ ++NG+ I V+
Sbjct: 241 GYSFVRFSTHESAAHAIVSVNGTTIEGHVV 270
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 257 (95.5 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 74/262 (28%), Positives = 126/262 (48%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + V + ++F G SCK+ T E + + FV+F A AA+ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT-EHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G + K + V S + + + ++F+ +L ++T E + F+ FGKI+
Sbjct: 70 GRKILGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR 127
Query: 222 IARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL---YAAR---AQKKAEREQ 274
+ +D G S+G+GFV+F N DA A+ M G +G + + +A R A K +
Sbjct: 128 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187
Query: 275 ILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK 334
+ +FE+ + K VY I +TD+ ++ FS G I +V + K
Sbjct: 188 TKQLRFEDVVNQS--SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----K 240
Query: 335 GFGFVCFSSPEEASKAVNTFHG 356
G+ FV FS+ E A+ A+ + +G
Sbjct: 241 GYSFVRFSTHESAAHAIVSVNG 262
Score = 216 (81.1 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 72/270 (26%), Positives = 122/270 (45%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ S ++ + T+ C+ V F DA A+
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCF--VEFYEHRDAAAAL 65
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESIDNVRLQEMFQNFGNII 127
N ++ GK ++++W+ P ++K +N +FV +L I ++ F FG I
Sbjct: 66 AAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKIS 124
Query: 128 SCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
+V GKSKG+GFV F + A AI ++ G +G ++I +K P+P
Sbjct: 125 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP----PAP 180
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENGT--------------SR 231
+ N + DV + + + + G IAS L + T +
Sbjct: 181 KSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK 240
Query: 232 GFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
G+ FV F + A A+ ++NG+ I V+
Sbjct: 241 GYSFVRFSTHESAAHAIVSVNGTTIEGHVV 270
Score = 163 (62.4 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 52/182 (28%), Positives = 91/182 (50%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NL DVTE +++ FS+ G S + E+ ++ + FV F DA AL AMN
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT-EHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 253 G-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G ++G +V ++++ H F +V+V ++ ++T E++K
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDTSNH-F--------------HVFVGDLSPEITTEDIK 114
Query: 312 AHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ G I+ A+V++D G +KG+GFV F + +A A+ G L + + A
Sbjct: 115 SAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT 174
Query: 371 RK 372
RK
Sbjct: 175 RK 176
>SGD|S000001919 [details] [associations]
symbol:PES4 "Poly(A) binding protein, suppressor of DNA
polymerase epsilon mutation" species:4932 "Saccharomyces
cerevisiae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000001919
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
EMBL:D26442 PIR:S56278 RefSeq:NP_116678.1 ProteinModelPortal:P39684
SMR:P39684 STRING:P39684 EnsemblFungi:YFR023W GeneID:850579
KEGG:sce:YFR023W CYGD:YFR023w OMA:DDCGRSK NextBio:966406
Genevestigator:P39684 GermOnline:YFR023W Uniprot:P39684
Length = 611
Score = 264 (98.0 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 96/336 (28%), Positives = 163/336 (48%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++GDLH VT+ L F ++ S S +VC DS T +S +GY+NF +A +A+E
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLI--ESIDNVRL-QEMFQNFGNIISCK 130
N+T+++GK +RI S R+ RK+ N+F NL + R+ + F +G I+SCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY 190
+ + +D GFV FE E++A I+ N T+ K+I G K R +P+ +
Sbjct: 213 LDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
+ L + + E+ L EK SK S ++ +S+ F+ + P R +
Sbjct: 268 SRLDAETIIEK--EQSLNEKHSKGNDKES----KNIYSSSQNSIFIK-NLPTITTRD-DI 319
Query: 251 MNG-SVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT-- 306
+N S +G K +Y + A K + ++ ++ I +Y +N Y + VT
Sbjct: 320 LNFFSEVGPIKSIYLSNATKVKYLWAFVTYKNSSDSEKAIKRY--NNFYFRGKKLLVTRA 377
Query: 307 -DEELKAHFSQCGTITSAKVMRDEKGINKGF-GFVC 340
D+E +A F + I++ + NK F ++C
Sbjct: 378 QDKEERAKFIESQKISTLFLENLSAVCNKEFLKYLC 413
Score = 115 (45.5 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 30/120 (25%), Positives = 60/120 (50%)
Query: 266 AQKKAEREQIL--RH-QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITS 322
A+ E+EQ L +H + +K + I +++++KN+ T +++ FS+ G I S
Sbjct: 272 AETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKS 331
Query: 323 AKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQ 382
+ K + + FV + + ++ KA+ ++ + K L V AQ KE+R ++ Q
Sbjct: 332 IYLSNATK-VKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKFIESQ 390
Score = 101 (40.6 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 178 KSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFV 236
K+ ++ + K LF+ +L VTEE L F K+ S + D S G G++
Sbjct: 78 KNGKLKSFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYL 137
Query: 237 NFDNPDDARRALEAMNGSVIGSK 259
NF++ ++A +A+E +N + + K
Sbjct: 138 NFEDKEEAEKAMEELNYTKVNGK 160
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 182 (69.1 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 49/162 (30%), Positives = 84/162 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTG---RSTC--------YGYVNFL 61
+L V L ++T EL FS + S ++ +D G RS+ YG+VN+L
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYL 80
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
+ DA RAI N +L K +++S++ ++ K ANL++ L ++ +++MF
Sbjct: 81 NAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKD--ANLYISGLPRTMTQKDVEDMFL 138
Query: 122 NFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
FG+II+ +V + G S+G F++F+ A AI + NG
Sbjct: 139 PFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
Score = 169 (64.5 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 56/178 (31%), Positives = 82/178 (46%)
Query: 89 CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK-----VATSE---DGKSK 140
CRD R NL V L +++ L+ +F + G + S K VA E SK
Sbjct: 13 CRDDIGR----TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSK 68
Query: 141 GH----GFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMK 196
GH GFV + + A AI LNG + K I V F + S S + K NL++
Sbjct: 69 GHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS-FARPS-----SESIKDANLYIS 122
Query: 197 NLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
L +T++ + + F FG I + + D+ G SRG F+ FD +A A+ + NG
Sbjct: 123 GLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 47/183 (25%), Positives = 86/183 (46%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE--------NGTSRGFGF-VNFDNP 241
TNL + L ++T++ L FS G++ S + RD+ + S+G F N
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNY 79
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+A+ A A+N L R Q K ++ F E I K +N+Y+ +
Sbjct: 80 LNAKDAERAIN-------TLNGLRLQSKT-----IKVSFARPSSESI---KDANLYISGL 124
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+T ++++ F G I +++V+ D+ G+++G F+ F EA +A+ +F+G H
Sbjct: 125 PRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG---H 181
Query: 361 RKP 363
+ P
Sbjct: 182 KPP 184
Score = 120 (47.3 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N ++A A+ ++
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G K L + K+ +
Sbjct: 317 NGYRLGDKTLQVSFKTSKSHK 337
Score = 120 (47.3 bits), Expect = 0.00031, P = 0.00031
Identities = 30/102 (29%), Positives = 58/102 (56%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE------------KGINKGFGFVCF 341
+N+ V + ++T +EL++ FS G + SAK++RD+ KG + G+GFV +
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNY 79
Query: 342 SSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED--RQAHLQL 381
+ ++A +A+NT +G L K + V+ A+ + + A+L +
Sbjct: 80 LNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYI 121
Score = 117 (46.2 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ EEA+ A+ +
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 355 HGYMLHRKPLYVAIAQRKEDR 375
+GY L K L V+ K +
Sbjct: 317 NGYRLGDKTLQVSFKTSKSHK 337
Score = 115 (45.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 31/81 (38%), Positives = 40/81 (49%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL + D L +MF FG + + KV K KG GFV E A AI +L
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 161 NGTTVGDKRIYVGRFIKKSDR 181
NG +GDK + V KS +
Sbjct: 317 NGYRLGDKTLQVSFKTSKSHK 337
Score = 68 (29.0 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
A+LY+ L +T ++ D F F + + RV D TG S ++ F +A AI
Sbjct: 117 ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAI 175
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 177 (67.4 bits), Expect = 7.4e-19, Sum P(2) = 7.4e-19
Identities = 45/140 (32%), Positives = 78/140 (55%)
Query: 24 TDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83
TD LF+ +++ L S V +S YG+VN++ P DA +AI N +L K +
Sbjct: 95 TDSSLFE---KWRPLDS-EVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 150
Query: 84 RISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGH 142
++S++ R P + ANL+V L +++ L+++F +G II+ ++ + G S+G
Sbjct: 151 KVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGV 208
Query: 143 GFVQFETEESANAAIENLNG 162
GF++F+ A AI+ LNG
Sbjct: 209 GFIRFDKRIEAEEAIKGLNG 228
Score = 162 (62.1 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 41/136 (30%), Positives = 72/136 (52%)
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178
+F+ + + S + + +S G+GFV + + A AI LNG + K I V + +
Sbjct: 99 LFEKWRPLDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARP 157
Query: 179 SDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVN 237
S S + + NL++ L +T++ L + FS++G+I + I D+ G SRG GF+
Sbjct: 158 S-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 212
Query: 238 FDNPDDARRALEAMNG 253
FD +A A++ +NG
Sbjct: 213 FDKRIEAEEAIKGLNG 228
Score = 127 (49.8 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 48/180 (26%), Positives = 83/180 (46%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVN---FDN--PDDA 244
TNL + L ++T+E L F G+I S + RD+ G F + F+ P D+
Sbjct: 49 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFREYFTDSSLFEKWRPLDS 108
Query: 245 RRALEAMNGSVIG-SKVLYA--ARAQKKAEREQILRHQFEEKR----KERILKYKGSNVY 297
+ +G V Y A+K LR Q + + + + +N+Y
Sbjct: 109 EVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 168
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
V + +T +EL+ FSQ G I +++++ D+ GI++G GF+ F EA +A+ +G
Sbjct: 169 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 228
Score = 124 (48.7 bits), Expect = 7.4e-19, Sum P(2) = 7.4e-19
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRALEAM 251
+F+ NL D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 252 NGSVIGSKVLYAARAQKKAER 272
NG +G +VL + K +
Sbjct: 379 NGYRLGDRVLQVSFKTNKTHK 399
Score = 110 (43.8 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ +
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 379 NGYRLGDRVLQVSFKTNK 396
Score = 105 (42.0 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
+FV NL D L +MF FG + + KV K KG GFV + A AI +L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 161 NGTTVGDKRIYV 172
NG +GD+ + V
Sbjct: 379 NGYRLGDRVLQV 390
Score = 81 (33.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +A+ A+LYV L +T EL FS++ + + R+ D TG S G++ F
Sbjct: 157 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 216
Query: 64 HDAIRAIEVKN 74
+A AI+ N
Sbjct: 217 IEAEEAIKGLN 227
Score = 63 (27.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 85 ISWSCRDP-DA--RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKG 141
I+ +C P D+ + NL V L +++ L+ +F + G I SCK+ K G
Sbjct: 31 INNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD---KITG 87
Query: 142 HGFVQFETEES 152
+ F ++ T+ S
Sbjct: 88 NQFREYFTDSS 98
Score = 47 (21.6 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTG 50
T + +L V L ++T EL F + S ++ +D TG
Sbjct: 44 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG 87
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 226 (84.6 bits), Expect = 8.7e-19, Sum P(2) = 8.7e-19
Identities = 52/173 (30%), Positives = 97/173 (56%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKG--HGFVQFETEESANAAIEN 159
L+V L + L+++F+ G++IS K+ ++ SKG +GFV+F+ +A A++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + I V + +S+ + + ++F+ +L ++V +E L++ FS FG ++
Sbjct: 152 LNGRRIHQSEIRVN-WAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSE 210
Query: 220 LLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
+ D + G SRG+GFV F DA +AL +M+G +GS+ + A +K +
Sbjct: 211 ARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQ 263
Score = 206 (77.6 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 48/163 (29%), Positives = 84/163 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDST-TGRSTCYGYVNFLSPHDAIRAIE 71
+LYVG L P VT+ L F + SV++ D + YG+V F P A RA++
Sbjct: 91 ALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQ 150
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESIDNVRLQEMFQNFGNIIS 128
N ++H +R++W+ + A K +N +FV +L +++ L + F FG++
Sbjct: 151 TLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSE 210
Query: 129 CKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
+V + G+S+G+GFV F A A+ +++G +G + I
Sbjct: 211 ARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAI 253
Score = 203 (76.5 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 64/213 (30%), Positives = 104/213 (48%)
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRG--FGFVNF 238
R P P + L++ LD VTE+ L + F G + S+ I D+N S+G +GFV F
Sbjct: 82 RAAPEPNKRA--LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEF 139
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
D+P A RA++ +NG R ++E +Q KE + +++V
Sbjct: 140 DDPGAAERAMQTLNG-----------RRIHQSEIRVNWAYQSNTANKEDTSNH--FHIFV 186
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGY 357
++ ++V DE L FS G+++ A+VM D K G ++G+GFV F +A KA+ + G
Sbjct: 187 GDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGE 246
Query: 358 MLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
L + + A +K Q + Q A G+
Sbjct: 247 WLGSRAIRCNWANQKG--QPSISQQQAMAAMGM 277
Score = 129 (50.5 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL +V D L AFS F S++ RV D TGRS YG+V F DA +A+
Sbjct: 184 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSM 243
Query: 74 NHTQLHGKMLRISWS 88
+ L + +R +W+
Sbjct: 244 DGEWLGSRAIRCNWA 258
Score = 88 (36.0 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 28/113 (24%), Positives = 49/113 (43%)
Query: 149 TEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLV 208
+++ A AA+ + TT + I+ D V+ A T ++ NL T+ +V
Sbjct: 267 SQQQAMAAM-GMTPTTPFGHHHFPTHGIQSYDMVVQQTPAWQTTCYVGNLTPYTTQNDIV 325
Query: 209 EKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
F FG + + D RGF F+ D ++A A+ +NG + + L
Sbjct: 326 PLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNGYNVNGRPL 373
Score = 79 (32.9 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 103 FVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNG 162
+V NL + +FQNFG +I ++ +G F++ +T E+A +AI LNG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
Query: 163 TTVGDK 168
V +
Sbjct: 366 YNVNGR 371
Score = 73 (30.8 bits), Expect = 8.7e-19, Sum P(2) = 8.7e-19
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
YV N+ T ++ F G + ++ D +GF F+ + E A+ A+ +G
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
Query: 357 YMLHRKPL 364
Y ++ +PL
Sbjct: 366 YNVNGRPL 373
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 235 (87.8 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 58/172 (33%), Positives = 95/172 (55%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVG L V++ L++ F + + + + KD TG+ YG+V FLS DA AI+
Sbjct: 13 AAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC-K 130
+ N +L+GK +R++ + G AN+F+ NL ID L + F FG I+ K
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 131 VATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+ D G SKG+ F+ F + ++++AAIE +NG + ++ I V KK +
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 210 (79.0 bits), Expect = 2.1e-15, Sum P(3) = 2.1e-15
Identities = 60/187 (32%), Positives = 100/187 (53%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETE 150
P + ++ A ++V L E + L E+F G +++ + G+ +G+GFV+F +E
Sbjct: 5 PISERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEK 210
E A+ AI+ +N + K I V + ++ L A N+F+ NLD ++ E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDT 119
Query: 211 FSKFGKIASL-LIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK---VLYAAR 265
FS FG I I RD + G S+G+ F+NF + D + A+EAMNG + ++ V YA +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 266 AQKKAER 272
K ER
Sbjct: 180 KDSKGER 186
Score = 175 (66.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 69/274 (25%), Positives = 121/274 (44%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
+++ LD V+E L E F + G + + + +D G +G+GFV F + +DA A++ M
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + K + R K + + L G+N+++ N+D ++ ++ L
Sbjct: 75 NMIKLYGKPI---RVNKASAHNKNLD--------------VGANIFIGNLDPEIDEKLLY 117
Query: 312 AHFSQCGTITSA-KVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
FS G I K+MRD + G +KG+ F+ F+S + + A+ +G L +P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 370 QRKEDR-QAH----LQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPP-GIVSQVPPRPGL 423
+K+ + + H +L AQ+ + P TP + P PG+
Sbjct: 178 FKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSMPTPVMTALGAAMPIPGM 237
Query: 424 MYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNP 456
P G G +PP P + P P P
Sbjct: 238 --PPPGAFPPVPPPGTMPPGMPPGMPMPPAPGTP 269
Score = 53 (23.7 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 399 PSGYPSLYYTTP--PGIVS-QVPPRPGLMYQPLGLRT-GWRANGFVPPTRPAFQVSPLPV 454
P+G P + P PG + PP P + P+G+ G PP P + P P+
Sbjct: 301 PTGPPGMVPPPPGPPGSNQPRAPPPPQMPPPPMGVPPRGPFGPPMGPPMHPGMRGPPPPM 360
Query: 455 NP 456
P
Sbjct: 361 PP 362
Score = 46 (21.3 bits), Expect = 7.6e-18, Sum P(3) = 7.6e-18
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 399 PSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNP 456
P +P + PPG + P PG+ P + G PP P F P ++P
Sbjct: 240 PGAFPPV---PPPGTMPPGMP-PGMPMPPAPGTPAPQGGGGPPPGHPPFP--PAGMHP 291
Score = 45 (20.9 bits), Expect = 9.6e-18, Sum P(3) = 9.6e-18
Identities = 17/60 (28%), Positives = 22/60 (36%)
Query: 398 IPSGYPSLYYTTPPGIVSQVPPRPGLM-YQPLGLRTGWRANGFVPPTRPAFQVSPLPVNP 456
+P G P P P PG + P G+ + +PPT P V P P P
Sbjct: 256 MPPGMPMPPAPGTPAPQGGGGPPPGHPPFPPAGMHPPGMPHMPMPPTGPPGMVPPPPGPP 315
Score = 37 (18.1 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 523 FNSGGVMARKPDMLNGMLAAPSP 545
F G M +P G + AP+P
Sbjct: 377 FQRGPPMPPRPPAPRGPMRAPAP 399
Score = 37 (18.1 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 389 GIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
G+ G + P GY + PP + PP P P G
Sbjct: 352 GMRGPPPPMPPPGYGAGPPRPPPFGFQRGPPMPPRPPAPRG 392
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 220 (82.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 47/171 (27%), Positives = 93/171 (54%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V L + L+++F+ G++ + K+ ++ K +GFV+++ +A+ A++ LN
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G V I V + + + + ++F+ +L ++V +E L + FS FG ++
Sbjct: 147 GRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEAR 206
Query: 222 IARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
+ D + G SRG+GFV F + DA +AL +M+G +GS+ + A +K +
Sbjct: 207 VMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQ 257
Score = 205 (77.2 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 62/214 (28%), Positives = 106/214 (49%)
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
R P P + L++ LD+ VTE+ L + F G + ++ I D+N +GFV +D+
Sbjct: 77 RTAPEPNKRA--LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDD 134
Query: 241 PDDARRALEAMNGSVIGS---KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVY 297
P A RA++ +NG + +V +A +A A +E H F +++
Sbjct: 135 PGAADRAMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNH-F--------------HIF 179
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHG 356
V ++ ++V DE L FS G+++ A+VM D K G ++G+GFV F +A KA+++ G
Sbjct: 180 VGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDG 239
Query: 357 YMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
L + + A +K Q + Q A G+
Sbjct: 240 EWLGSRAIRCNWANQKG--QPSIAQQQAMSAVGM 271
Score = 184 (69.8 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 48/171 (28%), Positives = 86/171 (50%)
Query: 7 TATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
TA P +LYVG L VT+ L F + +V++ D + YG+V + P
Sbjct: 78 TAPEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVEYDDPG 136
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDP-DARKSGVAN---LFVKNLIESIDNVRLQEMF 120
A RA++ N ++H +R++W+ + A K +N +FV +L +++ L + F
Sbjct: 137 AADRAMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAF 196
Query: 121 QNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
FG++ +V + G+S+G+GFV F A A+ +++G +G + I
Sbjct: 197 SVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAI 247
Score = 128 (50.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL +V D L AFS F S++ RV D TGRS YG+V F DA +A+
Sbjct: 178 IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Query: 74 NHTQLHGKMLRISWS 88
+ L + +R +W+
Sbjct: 238 DGEWLGSRAIRCNWA 252
Score = 79 (32.9 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 26/120 (21%), Positives = 51/120 (42%)
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
++ A +A+ + TT + ++ + V+ A T ++ NL T +V
Sbjct: 262 QQQAMSAV-GMTPTTPFGHHHFPTHGMQSYEMVVNQTPAYQTTCYVGNLTPYTTANDVVP 320
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
F FG + D RGF F+ D+ ++A +A+ +NG + + L + + K
Sbjct: 321 LFQNFGYVVESRFQAD-----RGFAFIKMDSHENAAQAICGLNGYNVNGRPLKCSWGKDK 375
Score = 77 (32.2 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 25/111 (22%), Positives = 47/111 (42%)
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
YV N+ T ++ F G + ++ D +GF F+ S E A++A+ +G
Sbjct: 305 YVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-----RGFAFIKMDSHENAAQAICGLNG 359
Query: 357 YMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYY 407
Y ++ +PL + + K +Q + + + P G PS Y+
Sbjct: 360 YNVNGRPLKCSWGKDKNSTNPQGNFDPSQAFSP-QSAGGPGFP-GTPSTYF 408
Score = 67 (28.6 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDK 168
+FQNFG ++ + +G F++ ++ E+A AI LNG V +
Sbjct: 321 LFQNFGYVVESRFQAD-----RGFAFIKMDSHENAAQAICGLNGYNVNGR 365
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 188 (71.2 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 40/116 (34%), Positives = 68/116 (58%)
Query: 50 GRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIE 109
G+S YG+VN++ DA +A+ N +L K++++S++ ++ K ANL+V L +
Sbjct: 82 GQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKG--ANLYVSGLPK 139
Query: 110 SIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTT 164
++ L+ MF +FG II+ ++ G SKG GF++F+ A AI+ LNG T
Sbjct: 140 NLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKT 195
Score = 176 (67.0 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 50/173 (28%), Positives = 85/173 (49%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-------------------EDGKSKG 141
NL V L +++ ++ +F + G + SCK+ + G+S G
Sbjct: 27 NLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLG 86
Query: 142 HGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSD 201
+GFV + E A A+ LNG + +K I V + + S S + K NL++ L +
Sbjct: 87 YGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVS-YARPS-----SESIKGANLYVSGLPKN 140
Query: 202 VTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
+++ L F+ FGKI + I D +G S+G GF+ FD ++A RA++ +NG
Sbjct: 141 LSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNG 193
Score = 134 (52.2 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 45/178 (25%), Positives = 86/178 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L +T+E + FS G++ S + RD+ +G + NP AL+
Sbjct: 26 TNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNP-----ALQ 80
Query: 250 AMNGSVIGSKVLYAARAQ--KKAE--------REQILRHQFEEKRKERILKYKGSNVYVK 299
G +G + RA+ +KA + ++++ + E I KG+N+YV
Sbjct: 81 --QGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESI---KGANLYVS 135
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
+ +++ +L+ F+ G I +++++ D G++KG GF+ F EA +A+ +G
Sbjct: 136 GLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNG 193
Score = 128 (50.1 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 44/161 (27%), Positives = 74/161 (45%)
Query: 121 QNFGNIISCKVATSEDGKSKGH---GFVQFETEESANAAIENLNGTTVGDKRI-Y---VG 173
+ + I+ K A + +K + T ++A AA L G RI Y G
Sbjct: 197 KGYAEPITVKFANNPSNSAKAQIAPPLTAYLTPQAA-AATRRLAGALPSAGRIRYSPLAG 255
Query: 174 RFIKKSDRVLPSPAAKYTN--LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTS 230
+ S +LP A + +F+ NL + E L + F FG + S+ + RD +
Sbjct: 256 DLLANS--ILPGNAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKC 313
Query: 231 RGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
+GFGFV N D+A A++++NG +G++VL + K +
Sbjct: 314 KGFGFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSFKTNKTK 354
Score = 107 (42.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 102 LFVKNLI-ESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIEN 159
+FV NL E+ +NV L ++F FG + S KV + K KG GFV + A AI++
Sbjct: 275 IFVYNLAPETEENV-LWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQS 333
Query: 160 LNGTTVGDKRIYV 172
LNG T+G++ + V
Sbjct: 334 LNGYTLGNRVLQV 346
Score = 105 (42.0 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTF 354
++V N+ + + L F G + S KV+RD + KGFGFV ++ +EA A+ +
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 355 HGYMLHRKPLYVAIAQRK 372
+GY L + L V+ K
Sbjct: 335 NGYTLGNRVLQVSFKTNK 352
Score = 80 (33.2 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LYV L +++ +L F+ F + + R+ D+ +G S G++ F ++A RAI+
Sbjct: 130 ANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQ 189
Query: 72 VKN 74
N
Sbjct: 190 ELN 192
Score = 76 (31.8 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 33/135 (24%), Positives = 58/135 (42%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH-------- 64
+L V L +T E+ FS L S ++ +D +G + L+P
Sbjct: 27 NLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLG 86
Query: 65 ----DAIRAIEVKNHTQ-LHGKMLR---ISWSCRDPDARKSGVANLFVKNLIESIDNVRL 116
+ +RA + + L+G L+ I S P + ANL+V L +++ L
Sbjct: 87 YGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDL 146
Query: 117 QEMFQNFGNIISCKV 131
+ MF +FG II+ ++
Sbjct: 147 EGMFASFGKIITSRI 161
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 133 (51.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 47/183 (25%), Positives = 83/183 (45%)
Query: 228 GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYA--ARAQKKAEREQILRHQFEEKRK 285
G SRGFGFV F + A+ A+ +MNG+ + +K L A + + + ++
Sbjct: 137 GLSRGFGFVKFKDVASAQYAINSMNGAKVENKTLLVRFANSDPNSNNTNNSNNNNDDDNN 196
Query: 286 ER-------------ILKYK-GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EK 330
I + K +NV+++ + + +L FS G + +K++ D
Sbjct: 197 NNNNNNNSNNNNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITT 256
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLH--RKPLYVAIA----QRKEDRQAHLQLQYA 384
++G G V + + A AV + +G++L KPL V A ++K+ RQ Q Q
Sbjct: 257 NASRGQGLVRYIDTQSAINAVKSLNGFILQDPEKPLIVRFADNEDEKKQKRQKLQQKQVR 316
Query: 385 QHM 387
Q+M
Sbjct: 317 QNM 319
Score = 127 (49.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDD 243
S +A NLF+ L + T + L FS FG+I S + D N G SRGFGFV F +
Sbjct: 93 SNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVAS 152
Query: 244 ARRALEAMNGSVIGSKVL 261
A+ A+ +MNG+ + +K L
Sbjct: 153 AQYAINSMNGAKVENKTL 170
Score = 126 (49.4 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 38/102 (37%), Positives = 52/102 (50%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIEN 159
NLF+ L + + L+ +F FG I SC+V G S+G GFV+F+ SA AI +
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSD 201
+NG V +K + V RF SD P + TN N D D
Sbjct: 160 MNGAKVENKTLLV-RFAN-SD-----PNSNNTNNSNNNNDDD 194
Score = 126 (49.4 bits), Expect = 4.3e-16, Sum P(3) = 4.3e-16
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG-TSRGFGFVNFDNPDD 243
+P TNL++ NL SD + L FS G IAS+ I RD+ RG+GFV + D
Sbjct: 376 NPGTDPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLAD 435
Query: 244 ARRALEAMNGSVIGSKVL 261
+ A+ ++NG +G K +
Sbjct: 436 SYSAINSINGVQVGGKTI 453
Score = 125 (49.1 bits), Expect = 0.00015, P = 0.00015
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T P +LYV +L D D L+ FS ++ASV++ +D TT YG+V +S D+
Sbjct: 379 TDPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYS 438
Query: 69 AIEVKNHTQLHGKMLRISW 87
AI N Q+ GK + +S+
Sbjct: 439 AINSINGVQVGGKTISVSF 457
Score = 121 (47.7 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG-INKGFGFVCFSSPEEASKAVN 352
+N+YV N+ D D L FS CG I S K++RD+ + +G+GFV S ++ A+N
Sbjct: 382 TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAIN 441
Query: 353 TFHGYMLHRKPLYVA 367
+ +G + K + V+
Sbjct: 442 SINGVQVGGKTISVS 456
Score = 103 (41.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 92 PDARKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFE 148
P + G NL+V NL D+ L +F G I S K+ + + +G+GFV+
Sbjct: 372 PGGKNPGTDPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMV 431
Query: 149 TEESANAAIENLNGTTVGDKRIYV 172
+ + +AI ++NG VG K I V
Sbjct: 432 SLADSYSAINSINGVQVGGKTISV 455
Score = 99 (39.9 bits), Expect = 4.3e-16, Sum P(3) = 4.3e-16
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIEN 159
N+F++ L D +L E+F +G ++ K+ S+G G V++ +SA A+++
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKS 279
Query: 160 LNGTTVGD-KRIYVGRFIKKSD 180
LNG + D ++ + RF D
Sbjct: 280 LNGFILQDPEKPLIVRFADNED 301
Score = 97 (39.2 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 26/103 (25%), Positives = 54/103 (52%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIA-SLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
N+F++ L + + L E FS +G++ S L+ SRG G V + + A A+++
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKS 279
Query: 251 MNGSVIGS--KVLYAARAQKKAEREQILRHQFEEKRKERILKY 291
+NG ++ K L A + E++Q R + ++K+ + +++
Sbjct: 280 LNGFILQDPEKPLIVRFADNEDEKKQ-KRQKLQQKQVRQNMRF 321
Score = 97 (39.2 bits), Expect = 4.3e-16, Sum P(3) = 4.3e-16
Identities = 26/89 (29%), Positives = 41/89 (46%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L++ L T L FS F + S RV D TG S +G+V F A AI
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVAN 101
N ++ K L + ++ DP++ + +N
Sbjct: 160 MNGAKVENKTLLVRFANSDPNSNNTNNSN 188
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 237 (88.5 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 57/171 (33%), Positives = 92/171 (53%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++Y+G+L V+D +++ + + +V + KD T YG+V F S DA A
Sbjct: 13 ATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASR 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC-K 130
+ N +L+GK +R++ + D A LFV NL + L + F FGN+++ K
Sbjct: 73 IMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVNLPK 132
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
VA + SKG+GFV F ES++AAI N+NG + +K++ V KK +
Sbjct: 133 VARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKKDGK 183
Score = 206 (77.6 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 70/260 (26%), Positives = 121/260 (46%)
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS-RGFGFVNFDNPDDARRA 247
K +++ NLD V++ + E + G+I ++ + +D S +G+GFV F++ +DA A
Sbjct: 11 KEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYA 70
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
MNG + K + R K + +K+K + G+ ++V N+D VT+
Sbjct: 71 SRIMNGIRLYGKPI---RVNKASA----------DKQKSVEI---GAELFVGNLDPMVTE 114
Query: 308 EELKAHFSQCGTITSA-KVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L FS+ G + + KV RD+ ++KG+GFV F+ E + A+ +G L K + V
Sbjct: 115 QVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSV 174
Query: 367 AIAQRKEDRQAHLQLQYAQHMAGIEGSSANV-IPSGYPSLYYTTPPGIVSQVPPRPGLMY 425
A +K D + A+ M + NV +P+ +T P P P M
Sbjct: 175 QYAYKK-DGKGERHGDQAERMLAAQARKHNVQVPTQALPPQFTAPAA-----PAMPADMS 228
Query: 426 QPLGLRTGWRANGFVPPTRP 445
+P+ + G VP P
Sbjct: 229 RPMSTGPADQGMGRVPMLPP 248
Score = 155 (59.6 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 68/257 (26%), Positives = 108/257 (42%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASL-LIARDENGTSRGFGFVNFDNPDDARRALEAM 251
LF+ NLD VTE+ L + FS+FG + +L +ARD++ S+G+GFV+F + + + A+ M
Sbjct: 103 LFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANM 162
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG + +K + A KK + + RH + ER+L + V+ + +
Sbjct: 163 NGQYLMNKQVSVQYAYKKDGKGE--RHG---DQAERMLAAQARKHNVQ-VPTQALPPQFT 216
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
A + ++ M ++G G V P+ + N L R L A
Sbjct: 217 APAAPAMPADMSRPMSTGPA-DQGMGRVPMLPPQLVGFSPNVATQQSLARPGLPSVTAAT 275
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLR 431
L + AG G +P G + P Q P PG + P G
Sbjct: 276 PPPG---LPARPPPSQAGYGGPQV-FLPPGLNNS--GQQPQYTPQAAPPPG--FAPPGFG 327
Query: 432 TGWRANGFVPPTRPAFQ 448
T ++G PP P FQ
Sbjct: 328 TPSGSSGPPPPMPPGFQ 344
Score = 43 (20.2 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 399 PSGYPSLYYTTPPGIVSQVPPRPGLMYQP 427
P G+ + TP G PP P QP
Sbjct: 318 PPGFAPPGFGTPSGSSGPPPPMPPGFQQP 346
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 163 (62.4 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 46/152 (30%), Positives = 74/152 (48%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++G + ++ + +L F +F + + V KD TG ++ + + A++A +
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKA-QSA 67
Query: 74 NHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
H Q L G I D ++R LFV L + + ++ MF+ FGNI C V
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGED-RKLFVGMLGKQQTDEDVRRMFEPFGNIDECTV 126
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
DG SKG FV+F+T A AAI L+G+
Sbjct: 127 LRGPDGTSKGCAFVKFQTHTEAQAAINALHGS 158
Score = 145 (56.1 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 50/168 (29%), Positives = 76/168 (45%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
++PDA K LF+ + ++D L+ +F+ FG I V + G KG F+ +
Sbjct: 2 KEPDAIK-----LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYC 56
Query: 149 TEESANAAIENLNG--TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
ESA A L+ T G R +K +D K LF+ L T+E
Sbjct: 57 ARESALKAQSALHEQKTLPGMNRPIQ---VKPADSESRGEDRK---LFVGMLGKQQTDED 110
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
+ F FG I + R +GTS+G FV F +A+ A+ A++GS
Sbjct: 111 VRRMFEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGS 158
Score = 136 (52.9 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
N+F+ +L + T+ +++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQA 437
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 438 MNGFQIGMKRLKVQLKRPKDANR 460
Score = 130 (50.8 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
N+F+ +L + + + +MF FGN+IS KV +SK GFV F+ SA AAI+
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQA 437
Query: 160 LNGTTVGDKRIYV 172
+NG +G KR+ V
Sbjct: 438 MNGFQIGMKRLKV 450
Score = 130 (50.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 44/165 (26%), Positives = 73/165 (44%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ + ++ E+ L F +FGKI L + +D+ G +G F+ + + A +A A+
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ K L Q+ E + ++R L +V + TDE+++
Sbjct: 69 HEQ----KTLPGMNRPI-----QVKPADSESRGEDRKL-------FVGMLGKQQTDEDVR 112
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
F G I V+R G +KG FV F + EA A+N HG
Sbjct: 113 RMFEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 126 (49.4 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 34/133 (25%), Positives = 62/133 (46%)
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
D ++A M Y + + IL+ Q +++++R +G N+++ ++
Sbjct: 326 DPLQQAYAGMQHYTAAYPAAYGLVSPAFTQPPAILQQQPPQQQQQREGP-EGCNIFIYHL 384
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+ TD E+ F G + SAKV D +K FGFV F +P A A+ +G+ +
Sbjct: 385 PQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAMNGFQIG 444
Query: 361 RKPLYVAIAQRKE 373
K L V + + K+
Sbjct: 445 MKRLKVQLKRPKD 457
Score = 69 (29.3 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 319 TITSAKVMRDEKGINKGFGFV-CFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
T T + G+N G+ V S+ + +S+A+ T +G LH P +AQ +QA
Sbjct: 276 TATQVSAIPATLGVN-GYSAVPTQSTVQPSSEAIYT-NG--LHPYPAQSPVAQLDPLQQA 331
Query: 378 HLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
+ +Q+ + A + V P+ +T PP I+ Q PP+
Sbjct: 332 YAGMQH--YTAAYPAAYGLVSPA------FTQPPAILQQQPPQ 366
Score = 39 (18.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 441 PPTRPAFQVSPLP 453
PPT A QVS +P
Sbjct: 272 PPTLTATQVSAIP 284
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 239 (89.2 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 64/188 (34%), Positives = 100/188 (53%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKS-KGHGFVQFETEESANAAIE 158
A ++V NL E + EM G +++ + ++ +G+GFV+F+T ESA+ A
Sbjct: 12 ATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAAR 71
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
LNG V K I V + +D+ A LF+ NLD V E+ L + FS+FG++
Sbjct: 72 ALNGIRVFGKVIRVNK--ASADK--QKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLV 127
Query: 219 SLL-IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
+ + RD N S+G+GFVNFD+ + + A + MNG + SK + A KK + + R
Sbjct: 128 TPPNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKKDGKGE--R 185
Query: 278 HQFEEKRK 285
H E +RK
Sbjct: 186 HGDEAERK 193
Score = 227 (85.0 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 78/273 (28%), Positives = 120/273 (43%)
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRA 247
K +++ NLD E + E ++ G + +L + D + T +G+GFV FD P+ A A
Sbjct: 10 KEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYA 69
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
A+NG + KV+ R K + +K+K + G+ ++V N+D V +
Sbjct: 70 ARALNGIRVFGKVI---RVNKASA----------DKQKTAEI---GAELFVNNLDPQVDE 113
Query: 308 EELKAHFSQCGT-ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L FS+ G +T V+RD I+KG+GFV F S E + A +T +G L K + V
Sbjct: 114 KILFDTFSRFGQLVTPPNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITV 173
Query: 367 AIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVP---PRPGL 423
A +K D + A+ EG N++P P PP + P P
Sbjct: 174 EYAYKK-DGKGERHGDEAERKLAAEGKKHNIVPEQQP-----LPPAYLMSAPASTPAGAT 227
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNP 456
P G G GF P P + P P
Sbjct: 228 PATPTGPAAG-PPPGF-DPAAPNGPIGGAPQQP 258
Score = 186 (70.5 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 46/171 (26%), Positives = 86/171 (50%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVG+L + +++ ++ + ++ + D + YG+V F +P A A
Sbjct: 12 ATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAAR 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC-K 130
N ++ GK++R++ + D A LFV NL +D L + F FG +++
Sbjct: 72 ALNGIRVFGKVIRVNKASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLVTPPN 131
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
V + SKG+GFV F++ E+++ A + +NG + K+I V KK +
Sbjct: 132 VVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKKDGK 182
Score = 48 (22.0 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 22/70 (31%), Positives = 28/70 (40%)
Query: 385 QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP---RPGLMYQPLGLRTGWRANGFVP 441
+HM + G + PSG P+ PP + PP PG+ P G R G P
Sbjct: 301 RHMGMMGGHALPPAPSGLPA---RPPPSMGG--PPGNFHPGM--PPSGFRGPPAPMGLPP 353
Query: 442 PTRPAFQVSP 451
P P Q P
Sbjct: 354 P--PGQQPHP 361
Score = 43 (20.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 17/62 (27%), Positives = 22/62 (35%)
Query: 397 VIPSGYPSLYYTTPP-----GIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSP 451
V P+G P+ Y PP G +PP+ P G G +PP P
Sbjct: 267 VPPAGIPAGYGAPPPRGGPPGFGGHMPPQAA---GP-GRHMGMMGGHALPPAPSGLPARP 322
Query: 452 LP 453
P
Sbjct: 323 PP 324
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 165 (63.1 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 46/152 (30%), Positives = 74/152 (48%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++G + ++ + +L F +F + + V KD TG ++ + + A++A +
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKA-QSA 67
Query: 74 NHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
H Q L G I D ++R LFV L + + ++ MF+ FGNI C V
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGED-RKLFVGMLGKQQTDEDVRRMFETFGNIDECTV 126
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
DG SKG FV+F+T A AAI L+G+
Sbjct: 127 LRGPDGTSKGCAFVKFQTHTEAQAAINALHGS 158
Score = 145 (56.1 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 50/168 (29%), Positives = 76/168 (45%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
++PDA K LF+ + ++D L+ +F+ FG I V + G KG F+ +
Sbjct: 2 KEPDAIK-----LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYC 56
Query: 149 TEESANAAIENLNG--TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
ESA A L+ T G R +K +D K LF+ L T+E
Sbjct: 57 ARESALKAQSALHEQKTLPGMNRPIQ---VKPADSESRGEDRK---LFVGMLGKQQTDED 110
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
+ F FG I + R +GTS+G FV F +A+ A+ A++GS
Sbjct: 111 VRRMFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGS 158
Score = 133 (51.9 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
N+F+ +L + T+ +++ F FG + S + D S+ FGFV+FDNP A+ A+++
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 437
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 438 MNGFQIGMKRLKVQLKRPKDANR 460
Score = 133 (51.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
N+F+ +L + + + +MF FGN+IS KV +SK GFV F+ SA AAI++
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 437
Query: 160 LNGTTVGDKRIYV 172
+NG +G KR+ V
Sbjct: 438 MNGFQIGMKRLKV 450
Score = 130 (50.8 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 44/165 (26%), Positives = 73/165 (44%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ + ++ E+ L F +FGKI L + +D+ G +G F+ + + A +A A+
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ K L Q+ E + ++R L +V + TDE+++
Sbjct: 69 HEQ----KTLPGMNRPI-----QVKPADSESRGEDRKL-------FVGMLGKQQTDEDVR 112
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
F G I V+R G +KG FV F + EA A+N HG
Sbjct: 113 RMFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 125 (49.1 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 34/133 (25%), Positives = 62/133 (46%)
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
D ++A M Y + + IL Q +++++R +G N+++ ++
Sbjct: 326 DPLQQAYAGMQHYTAAYPAAYGLVSPAFTQPPAILTQQPPQQQQQREGP-EGCNIFIYHL 384
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+ TD E+ F G + SAKV D +K FGFV F +P A A+ + +G+ +
Sbjct: 385 PQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQIG 444
Query: 361 RKPLYVAIAQRKE 373
K L V + + K+
Sbjct: 445 MKRLKVQLKRPKD 457
Score = 69 (29.3 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 319 TITSAKVMRDEKGINKGFGFV-CFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
T T + G+N G+ V S+ + +S+A+ T +G LH P +AQ +QA
Sbjct: 276 TATPVSAIPATLGVN-GYSAVPTQSTVQPSSEAIYT-NG--LHPYPAQSPVAQLDPLQQA 331
Query: 378 HLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
+ +Q+ + A + V P+ +T PP I++Q PP+
Sbjct: 332 YAGMQH--YTAAYPAAYGLVSPA------FTQPPAILTQQPPQ 366
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 235 (87.8 bits), Expect = 9.1e-17, P = 9.1e-17
Identities = 72/277 (25%), Positives = 133/277 (48%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDG-KSKGHGFVQFETEESANAAI 157
V L+V +L+ +D L F + + S KV ++ +S+G+GFV+F + +A A+
Sbjct: 118 VKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEAL 177
Query: 158 ENLNGTTVGDK----RIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS- 212
++ +G T+ + R+ F R S ++F+ +L DV++ L+E F+
Sbjct: 178 QSFSGVTMPNAEQPFRLNWASFSTGEKRA--SENGPDLSIFVGDLAPDVSDAVLLETFAG 235
Query: 213 KFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY--------- 262
++ + + D N G S+G+GFV F + ++ RA+ MNG+ S+ +
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
Query: 263 AARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITS 322
AA Q+ + L + S ++V +D DVT+E+L FS G + S
Sbjct: 296 AAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVS 355
Query: 323 AKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
K+ + KG GFV F++ + A +A+ +G ++
Sbjct: 356 VKIP-----VGKGCGFVQFANRQSAEEAIGNLNGTVI 387
Score = 168 (64.2 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 50/169 (29%), Positives = 87/169 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE- 71
+L+VGDL + + L FS ++SV+V ++ T +S YG+V FLS A A++
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 72 VKNHTQLHGKM-LRISW---SCRDPDARKSGV-ANLFVKNLIESIDNVRLQEMFQN-FGN 125
T + + R++W S + A ++G ++FV +L + + L E F + +
Sbjct: 180 FSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPS 239
Query: 126 IISCKVAT-SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG 173
+ KV S G+SKG+GFV+F E + A+ +NG +++ VG
Sbjct: 240 VKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVG 288
Score = 129 (50.5 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
+ +F+ LD+DVTEE L++ FS FG++ S+ I +G GFV F N A A+
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP-----VGKGCGFVQFANRQSAEEAIGN 381
Query: 251 MNGSVIGSKVL 261
+NG+VIG +
Sbjct: 382 LNGTVIGKNTV 392
Score = 121 (47.7 bits), Expect = 0.00039, P = 0.00039
Identities = 50/196 (25%), Positives = 88/196 (44%)
Query: 204 EEHLVEKFSKFGKIASLLIARDENGT-SRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY 262
E +L FS +++S+ + R++ S G+GFV F + A AL++ +G + +
Sbjct: 132 ETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNA--- 188
Query: 263 AARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS-QCGTIT 321
++ R EKR +++V ++ DV+D L F+ + ++
Sbjct: 189 -----EQPFRLNWASFSTGEKRASE--NGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVK 241
Query: 322 SAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
AKV+ D G +KG+GFV F E S+A+ +G + + V IA K A+ Q
Sbjct: 242 GAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKR-AAAYGQ 300
Query: 381 LQYAQHMAGIEGSSAN 396
+Q + G N
Sbjct: 301 QNGSQALTLAGGHGGN 316
Score = 120 (47.3 bits), Expect = 0.00050, P = 0.00050
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 96 KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANA 155
+S + +FV L + L + F +FG ++S K+ KG GFVQF +SA
Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG-----KGCGFVQFANRQSAEE 377
Query: 156 AIENLNGTTVGDK--RIYVGRFIKKSDR 181
AI NLNGT +G R+ GR K R
Sbjct: 378 AIGNLNGTVIGKNTVRLSWGRSPNKQWR 405
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 162 (62.1 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 42/151 (27%), Positives = 75/151 (49%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++G + ++ + +L F +F + + V KD TG ++ + + A++A
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNAL 68
Query: 74 NHTQ-LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
+ + L G I D + R G LFV L + + + +++MF+ FG+I C V
Sbjct: 69 HEQKTLPGMNRPIQVKPADSEGR--GDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVL 126
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGT 163
DG SKG FV++++ A AAI L+G+
Sbjct: 127 RGPDGASKGCAFVKYQSNAEAQAAISALHGS 157
Score = 135 (52.6 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
N+F+ +L + T+ +++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 368 NIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 427
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 428 MNGFQIGMKRLKVQLKRPKDANR 450
Score = 131 (51.2 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
N+F+ +L + + + +MF FGN+IS KV +SK GFV F+ SA AAI+
Sbjct: 368 NIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 427
Query: 160 LNGTTVGDKRIYV 172
+NG +G KR+ V
Sbjct: 428 MNGFQIGMKRLKV 440
Score = 124 (48.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 41/163 (25%), Positives = 74/163 (45%)
Query: 95 RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESA 153
+++ LF+ + +++ L+ +F+ FG I V + G KG F+ + ESA
Sbjct: 2 KEADAIKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESA 61
Query: 154 NAAIENLNG--TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF 211
A L+ T G R +K +D S LF+ L +++ + + F
Sbjct: 62 LKAQNALHEQKTLPGMNRPIQ---VKPAD----SEGRGDRKLFVGMLGKQLSDADVRKMF 114
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
FG I + R +G S+G FV + + +A+ A+ A++GS
Sbjct: 115 EPFGSIEECTVLRGPDGASKGCAFVKYQSNAEAQAAISALHGS 157
Score = 122 (48.0 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G N+++ ++ + TD E+ F G + SAKV D +K FGFV F +P A A
Sbjct: 365 EGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAA 424
Query: 351 VNTFHGYMLHRKPLYVAIAQRKE 373
+ +G+ + K L V + + K+
Sbjct: 425 IQAMNGFQIGMKRLKVQLKRPKD 447
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 243 (90.6 bits), Expect = 5.5e-18, P = 5.5e-18
Identities = 85/346 (24%), Positives = 148/346 (42%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + + ++F G SCK+ G + FV+F A A++ +N
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAAASLAAMN 68
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G + K + V S + + + ++F+ +L ++T + + F+ FG+I+
Sbjct: 69 GRKIMGKEVKVNWATSPSSQ--KKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDAR 126
Query: 222 IARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL---YAARAQK--KAEREQI 275
+ +D G S+G+GFV+F N DA A++ M G +G + + +A R KA E
Sbjct: 127 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETN 186
Query: 276 LRH-QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK 334
+H F+E + VY + +T++ ++ FS G I +V D K
Sbjct: 187 TKHLSFDEVVNQS--SPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD-----K 239
Query: 335 GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSS 394
G+ FV F+S E A+ A+ + +G L + + D + +Q + + G +
Sbjct: 240 GYSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGKETTDMVSPMQQVQVPQQSKV-GFA 298
Query: 395 ANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLR-TGWRANGF 439
A P G +Y I VP G G+ W GF
Sbjct: 299 AQ--PYGQWGQWYGNAQQISQYVPN--GWQVPTYGVYGQAWNQQGF 340
Score = 211 (79.3 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 70/272 (25%), Positives = 122/272 (44%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + F + S ++ D T G Y +V F A ++
Sbjct: 7 PKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD-TAGNDP-YCFVEFFEHRHAAASL 64
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESIDNVRLQEMFQNFGNII 127
N ++ GK ++++W+ P ++K +N +FV +L I ++ F FG I
Sbjct: 65 AAMNGRKIMGKEVKVNWAT-SPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRIS 123
Query: 128 SCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
+V GKSKG+GFV F + A AI+ + G +G ++I +K P+P
Sbjct: 124 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP----PAP 179
Query: 187 AAKY-TNLFMKNLDSDVTEEH--------------LVEKFSK--FGKIASLLIARDENGT 229
A Y TN + D V + L E+ + F ++ R
Sbjct: 180 KATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVF--P 237
Query: 230 SRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+G+ FV F++ + A A+ ++NG+ + ++
Sbjct: 238 DKGYSFVRFNSHESAAHAIVSVNGTSLEGHIV 269
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 235 (87.8 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 58/172 (33%), Positives = 95/172 (55%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVG L V++ L++ F + + + + KD TG+ YG+V FLS DA AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC-K 130
+ N +L+GK +R++ + G AN+F+ NL ID L + F FG I+ K
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 131 VATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+ D G SKG+ F+ F + ++++AAIE +NG + ++ I V KK +
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 212 (79.7 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 60/187 (32%), Positives = 100/187 (53%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETE 150
P + ++ A ++V L E + L E+F G +++ + G+ +G+GFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEK 210
E A+ AI+ +N + K I V + ++ L A N+F+ NLD ++ E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDT 119
Query: 211 FSKFGKIASL-LIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK---VLYAAR 265
FS FG I I RD + G S+G+ F+NF + D + A+EAMNG + ++ V YA +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 266 AQKKAER 272
K ER
Sbjct: 180 KDSKGER 186
Score = 178 (67.7 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 69/268 (25%), Positives = 122/268 (45%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
+++ LD V+E L E F + G + + + +D G +G+GFV F + +DA A++ M
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + K + R K + + L G+N+++ N+D ++ ++ L
Sbjct: 75 NMIKLYGKPI---RVNKASAHNKNLD--------------VGANIFIGNLDPEIDEKLLY 117
Query: 312 AHFSQCGTITSA-KVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
FS G I K+MRD + G +KG+ F+ F+S + + A+ +G L +P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSAN-VIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
+K+ + +H GS+A ++ + P P + + PP P + P+
Sbjct: 178 FKKDSKGE-------RH-----GSAAERLLAAQNPLSQADRPHQLFADAPPPPSVP-TPV 224
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNP 456
G G PP P P PV P
Sbjct: 225 VTALG---PGVTPPGLPPPGSFPPPVPP 249
Score = 51 (23.0 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 22/68 (32%), Positives = 29/68 (42%)
Query: 386 HMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGL-RTGWRANGFVPPTR 444
H G+ + P G ++ PPG Q PPRP P G+ G G +PP
Sbjct: 298 HHPGMPPMQVHHGPPGMGQ-HHPGPPGSGGQPPPRP-----PPGMPHPGPPPMG-MPPRG 350
Query: 445 PAFQVSPL 452
P F SP+
Sbjct: 351 PHFG-SPM 357
Score = 51 (23.0 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 25/87 (28%), Positives = 33/87 (37%)
Query: 385 QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGL-----RTGWRA--- 436
QH G GS P P + + PP + +PPR P+G G R
Sbjct: 316 QHHPGPPGSGGQPPPRPPPGMPHPGPPPM--GMPPRGPHFGSPMGHPGPMPHHGMRGPPP 373
Query: 437 ----NGFVPPTRP---AFQVSPLPVNP 456
+G+ P RP +Q PLP P
Sbjct: 374 LMPPHGYNGPPRPPPYGYQRVPLPPRP 400
Score = 39 (18.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 410 PPGIVSQVPPRP---GLMYQPLGLRTGWRANGFVPPTRPAF 447
PPG+ +PP P G P G TG G PP AF
Sbjct: 254 PPGMPPAMPPPPMPPGAG-AP-GPPTGAAPTGGHPPHPHAF 292
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 235 (87.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 58/172 (33%), Positives = 95/172 (55%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVG L V++ L++ F + + + + KD TG+ YG+V FLS DA AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC-K 130
+ N +L+GK +R++ + G AN+F+ NL ID L + F FG I+ K
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 131 VATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+ D G SKG+ F+ F + ++++AAIE +NG + ++ I V KK +
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 212 (79.7 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 60/187 (32%), Positives = 100/187 (53%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETE 150
P + ++ A ++V L E + L E+F G +++ + G+ +G+GFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEK 210
E A+ AI+ +N + K I V + ++ L A N+F+ NLD ++ E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDT 119
Query: 211 FSKFGKIASL-LIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK---VLYAAR 265
FS FG I I RD + G S+G+ F+NF + D + A+EAMNG + ++ V YA +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 266 AQKKAER 272
K ER
Sbjct: 180 KDSKGER 186
Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 69/268 (25%), Positives = 122/268 (45%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
+++ LD V+E L E F + G + + + +D G +G+GFV F + +DA A++ M
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + K + R K + + L G+N+++ N+D ++ ++ L
Sbjct: 75 NMIKLYGKPI---RVNKASAHNKNLD--------------VGANIFIGNLDPEIDEKLLY 117
Query: 312 AHFSQCGTITSA-KVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
FS G I K+MRD + G +KG+ F+ F+S + + A+ +G L +P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSAN-VIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
+K+ + +H GS+A ++ + P P + + PP P P+
Sbjct: 178 FKKDSKGE-------RH-----GSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP-NPV 224
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNP 456
G +G PP P P PV P
Sbjct: 225 VSSLG---SGLPPPGMPPPGSFPPPVPP 249
Score = 51 (23.0 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 401 GYPSLYYTTPPGIVSQVPPRPGLMYQPLGL-RTGWRANGFVPPTRPAFQVSPL 452
G+P + PPG Q PPRP P G+ G G +PP P F SP+
Sbjct: 320 GHP---HAGPPGSGGQPPPRP-----PPGMPHPGPPPMG-MPPRGPPFG-SPM 362
Score = 40 (19.1 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 410 PPGIVSQVPPRP 421
PPGI +PP P
Sbjct: 254 PPGIPPAMPPPP 265
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 235 (87.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 58/172 (33%), Positives = 95/172 (55%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVG L V++ L++ F + + + + KD TG+ YG+V FLS DA AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC-K 130
+ N +L+GK +R++ + G AN+F+ NL ID L + F FG I+ K
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 131 VATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+ D G SKG+ F+ F + ++++AAIE +NG + ++ I V KK +
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 212 (79.7 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 60/187 (32%), Positives = 100/187 (53%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETE 150
P + ++ A ++V L E + L E+F G +++ + G+ +G+GFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEK 210
E A+ AI+ +N + K I V + ++ L A N+F+ NLD ++ E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDT 119
Query: 211 FSKFGKIASL-LIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK---VLYAAR 265
FS FG I I RD + G S+G+ F+NF + D + A+EAMNG + ++ V YA +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 266 AQKKAER 272
K ER
Sbjct: 180 KDSKGER 186
Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 69/268 (25%), Positives = 122/268 (45%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
+++ LD V+E L E F + G + + + +D G +G+GFV F + +DA A++ M
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + K + R K + + L G+N+++ N+D ++ ++ L
Sbjct: 75 NMIKLYGKPI---RVNKASAHNKNLD--------------VGANIFIGNLDPEIDEKLLY 117
Query: 312 AHFSQCGTITSA-KVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
FS G I K+MRD + G +KG+ F+ F+S + + A+ +G L +P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSAN-VIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
+K+ + +H GS+A ++ + P P + + PP P P+
Sbjct: 178 FKKDSKGE-------RH-----GSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP-NPV 224
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNP 456
G +G PP P P PV P
Sbjct: 225 VSSLG---SGLPPPGMPPPGSFPPPVPP 249
Score = 51 (23.0 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 401 GYPSLYYTTPPGIVSQVPPRPGLMYQPLGL-RTGWRANGFVPPTRPAFQVSPL 452
G+P + PPG Q PPRP P G+ G G +PP P F SP+
Sbjct: 320 GHP---HAGPPGSGGQPPPRP-----PPGMPHPGPPPMG-LPPRGPPFG-SPM 362
Score = 40 (19.1 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 410 PPGIVSQVPPRP 421
PPGI +PP P
Sbjct: 254 PPGIPPAMPPPP 265
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 235 (87.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 58/172 (33%), Positives = 95/172 (55%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVG L V++ L++ F + + + + KD TG+ YG+V FLS DA AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC-K 130
+ N +L+GK +R++ + G AN+F+ NL ID L + F FG I+ K
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 131 VATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+ D G SKG+ F+ F + ++++AAIE +NG + ++ I V KK +
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 212 (79.7 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 60/187 (32%), Positives = 100/187 (53%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETE 150
P + ++ A ++V L E + L E+F G +++ + G+ +G+GFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEK 210
E A+ AI+ +N + K I V + ++ L A N+F+ NLD ++ E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDT 119
Query: 211 FSKFGKIASL-LIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK---VLYAAR 265
FS FG I I RD + G S+G+ F+NF + D + A+EAMNG + ++ V YA +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 266 AQKKAER 272
K ER
Sbjct: 180 KDSKGER 186
Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 69/268 (25%), Positives = 122/268 (45%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
+++ LD V+E L E F + G + + + +D G +G+GFV F + +DA A++ M
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + K + R K + + L G+N+++ N+D ++ ++ L
Sbjct: 75 NMIKLYGKPI---RVNKASAHNKNLD--------------VGANIFIGNLDPEIDEKLLY 117
Query: 312 AHFSQCGTITSA-KVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
FS G I K+MRD + G +KG+ F+ F+S + + A+ +G L +P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSAN-VIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
+K+ + +H GS+A ++ + P P + + PP P P+
Sbjct: 178 FKKDSKGE-------RH-----GSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP-NPV 224
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNP 456
G +G PP P P PV P
Sbjct: 225 VSSLG---SGLPPPGMPPPGSFPPPVPP 249
Score = 51 (23.0 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 401 GYPSLYYTTPPGIVSQVPPRPGLMYQPLGL-RTGWRANGFVPPTRPAFQVSPL 452
G+P + PPG Q PPRP P G+ G G +PP P F SP+
Sbjct: 320 GHP---HAGPPGSGGQPPPRP-----PPGMPHPGPPPMG-MPPRGPPFG-SPM 362
Score = 40 (19.1 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 410 PPGIVSQVPPRP 421
PPGI +PP P
Sbjct: 254 PPGIPPAMPPPP 265
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 235 (87.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 58/172 (33%), Positives = 95/172 (55%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVG L V++ L++ F + + + + KD TG+ YG+V FLS DA AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC-K 130
+ N +L+GK +R++ + G AN+F+ NL ID L + F FG I+ K
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 131 VATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+ D G SKG+ F+ F + ++++AAIE +NG + ++ I V KK +
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 212 (79.7 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 60/187 (32%), Positives = 100/187 (53%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETE 150
P + ++ A ++V L E + L E+F G +++ + G+ +G+GFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEK 210
E A+ AI+ +N + K I V + ++ L A N+F+ NLD ++ E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDT 119
Query: 211 FSKFGKIASL-LIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK---VLYAAR 265
FS FG I I RD + G S+G+ F+NF + D + A+EAMNG + ++ V YA +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 266 AQKKAER 272
K ER
Sbjct: 180 KDSKGER 186
Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 69/268 (25%), Positives = 122/268 (45%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
+++ LD V+E L E F + G + + + +D G +G+GFV F + +DA A++ M
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + K + R K + + L G+N+++ N+D ++ ++ L
Sbjct: 75 NMIKLYGKPI---RVNKASAHNKNLD--------------VGANIFIGNLDPEIDEKLLY 117
Query: 312 AHFSQCGTITSA-KVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
FS G I K+MRD + G +KG+ F+ F+S + + A+ +G L +P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSAN-VIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
+K+ + +H GS+A ++ + P P + + PP P P+
Sbjct: 178 FKKDSKGE-------RH-----GSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP-NPV 224
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNP 456
G +G PP P P PV P
Sbjct: 225 VSSLG---SGLPPPGMPPPGSFPPPVPP 249
Score = 51 (23.0 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 401 GYPSLYYTTPPGIVSQVPPRPGLMYQPLGL-RTGWRANGFVPPTRPAFQVSPL 452
G+P + PPG Q PPRP P G+ G G +PP P F SP+
Sbjct: 320 GHP---HAGPPGSGGQPPPRP-----PPGMPHPGPPPMG-MPPRGPPFG-SPM 362
Score = 40 (19.1 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 410 PPGIVSQVPPRP 421
PPGI +PP P
Sbjct: 254 PPGIPPAMPPPP 265
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 235 (87.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 58/172 (33%), Positives = 95/172 (55%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVG L V++ L++ F + + + + KD TG+ YG+V FLS DA AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC-K 130
+ N +L+GK +R++ + G AN+F+ NL ID L + F FG I+ K
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 131 VATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+ D G SKG+ F+ F + ++++AAIE +NG + ++ I V KK +
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 212 (79.7 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 60/187 (32%), Positives = 100/187 (53%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETE 150
P + ++ A ++V L E + L E+F G +++ + G+ +G+GFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEK 210
E A+ AI+ +N + K I V + ++ L A N+F+ NLD ++ E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDT 119
Query: 211 FSKFGKIASL-LIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK---VLYAAR 265
FS FG I I RD + G S+G+ F+NF + D + A+EAMNG + ++ V YA +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 266 AQKKAER 272
K ER
Sbjct: 180 KDSKGER 186
Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 69/268 (25%), Positives = 122/268 (45%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
+++ LD V+E L E F + G + + + +D G +G+GFV F + +DA A++ M
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + K + R K + + L G+N+++ N+D ++ ++ L
Sbjct: 75 NMIKLYGKPI---RVNKASAHNKNLD--------------VGANIFIGNLDPEIDEKLLY 117
Query: 312 AHFSQCGTITSA-KVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
FS G I K+MRD + G +KG+ F+ F+S + + A+ +G L +P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSAN-VIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
+K+ + +H GS+A ++ + P P + + PP P P+
Sbjct: 178 FKKDSKGE-------RH-----GSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP-NPV 224
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNP 456
G +G PP P P PV P
Sbjct: 225 VSSLG---SGLPPPGMPPPGSFPPPVPP 249
Score = 51 (23.0 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 401 GYPSLYYTTPPGIVSQVPPRPGLMYQPLGL-RTGWRANGFVPPTRPAFQVSPL 452
G+P + PPG Q PPRP P G+ G G +PP P F SP+
Sbjct: 320 GHP---HAGPPGSGGQPPPRP-----PPGMPHPGPPPMG-MPPRGPPFG-SPM 362
Score = 40 (19.1 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 410 PPGIVSQVPPRP 421
PPGI +PP P
Sbjct: 254 PPGIPPAMPPPP 265
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 235 (87.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 58/172 (33%), Positives = 95/172 (55%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVG L V++ L++ F + + + + KD TG+ YG+V FLS DA AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC-K 130
+ N +L+GK +R++ + G AN+F+ NL ID L + F FG I+ K
Sbjct: 73 IMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 131 VATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+ D G SKG+ F+ F + ++++AAIE +NG + ++ I V KK +
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 212 (79.7 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 60/187 (32%), Positives = 100/187 (53%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETE 150
P + ++ A ++V L E + L E+F G +++ + G+ +G+GFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEK 210
E A+ AI+ +N + K I V + ++ L A N+F+ NLD ++ E+ L +
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNK-ASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDT 119
Query: 211 FSKFGKIASL-LIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK---VLYAAR 265
FS FG I I RD + G S+G+ F+NF + D + A+EAMNG + ++ V YA +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 266 AQKKAER 272
K ER
Sbjct: 180 KDSKGER 186
Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 69/268 (25%), Positives = 122/268 (45%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
+++ LD V+E L E F + G + + + +D G +G+GFV F + +DA A++ M
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + K + R K + + L G+N+++ N+D ++ ++ L
Sbjct: 75 NMIKLYGKPI---RVNKASAHNKNLD--------------VGANIFIGNLDPEIDEKLLY 117
Query: 312 AHFSQCGTITSA-KVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
FS G I K+MRD + G +KG+ F+ F+S + + A+ +G L +P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSAN-VIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
+K+ + +H GS+A ++ + P P + + PP P P+
Sbjct: 178 FKKDSKGE-------RH-----GSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP-NPV 224
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNP 456
G +G PP P P PV P
Sbjct: 225 VSSLG---SGLPPPGMPPPGSFPPPVPP 249
Score = 51 (23.0 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 401 GYPSLYYTTPPGIVSQVPPRPGLMYQPLGL-RTGWRANGFVPPTRPAFQVSPL 452
G+P + PPG Q PPRP P G+ G G +PP P F SP+
Sbjct: 320 GHP---HAGPPGSGGQPPPRP-----PPGMPHPGPPPMG-MPPRGPPFG-SPM 362
Score = 40 (19.1 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 410 PPGIVSQVPPRP 421
PPGI +PP P
Sbjct: 254 PPGIPPAMPPPP 265
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 161 (61.7 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 41/146 (28%), Positives = 78/146 (53%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VG + + + +L + F E+ ++ S+ V +D TG S +V F + H A++A +
Sbjct: 359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDAL 418
Query: 74 NHTQ-LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
++ + L+G I D + R LFV L + ++ ++++F+ G I C V
Sbjct: 419 HNVKTLNGMYHPIQMKPADSENRNE--RKLFVGMLNKKLNENDVRKLFEVHGAIEECTVL 476
Query: 133 TSEDGKSKGHGFVQFETEESANAAIE 158
++G+SKG FV F T+ +A +AI+
Sbjct: 477 RDQNGQSKGCAFVTFATKHAAISAIK 502
Score = 141 (54.7 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEA 250
NLF+ +L + T+ L F FG + S + D + S+ FGFV+FDNPD A+ A++A
Sbjct: 727 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 786
Query: 251 MNGSVIGSKVL 261
MNG +G+K L
Sbjct: 787 MNGFQVGTKRL 797
Score = 141 (54.7 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 59/197 (29%), Positives = 93/197 (47%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
DPD K +FV + +S+D +L+EMF+ +G + S V + G SKG FV F T
Sbjct: 353 DPDNIK-----MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYT 407
Query: 150 EESANAAIENL-NGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLV 208
+A A + L N T+ +Y +K +D S LF+ L+ + E +
Sbjct: 408 RHAALKAQDALHNVKTLNG--MYHPIQMKPAD----SENRNERKLFVGMLNKKLNENDVR 461
Query: 209 EKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE---AMNGSVIGSK---VLY 262
+ F G I + RD+NG S+G FV F A A++ + N + G V+
Sbjct: 462 KLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVK 521
Query: 263 AARAQKKAEREQILRHQ 279
A QK+ E+++I + Q
Sbjct: 522 FADTQKEKEQKKIQQIQ 538
Score = 132 (51.5 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
Identities = 26/85 (30%), Positives = 50/85 (58%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G N+++ ++ + TD +L + F G + SAKV D++ ++K FGFV F +P+ A A
Sbjct: 724 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVA 783
Query: 351 VNTFHGYMLHRKPLYVAIAQRKEDR 375
+ +G+ + K L V + + K+ +
Sbjct: 784 IKAMNGFQVGTKRLKVQLKKPKDSK 808
Score = 128 (50.1 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKV-ATSEDGKSKGHGFVQFETEESANAAIEN 159
NLF+ +L + + L F FGN+IS KV + SK GFV F+ +SA AI+
Sbjct: 727 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 786
Query: 160 LNGTTVGDKRIYV 172
+NG VG KR+ V
Sbjct: 787 MNGFQVGTKRLKV 799
Score = 64 (27.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
L+VG L+ + + ++ F ++ V +D G+S +V F + H AI AI+V
Sbjct: 446 LFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQN-GQSKGCAFVTFATKHAAISAIKV 503
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 200 (75.5 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 61/232 (26%), Positives = 112/232 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKF-SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
+F+ N+ D+ + + + K G++ + + +D G SRG G V F + + ++ALE M
Sbjct: 39 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 98
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + + L ++ + E R ++ R+ GS ++V N+D V ++LK
Sbjct: 99 NKYDLSGRPL---NIKEDPDGENARRAL--QRTAGRL----GSTIFVANLDFKVGWKKLK 149
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS GT+ A + D+ G ++G G V F EA +A++ F+G L +P++V + +
Sbjct: 150 EVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDK 209
Query: 372 K---EDRQAHLQLQYAQHMAGIEGSSANVIPSGYP-SLYYTTPPGIVSQVPP 419
ED ++H + Q G+ G + P G P S G++ + P
Sbjct: 210 SVPHEDYRSH-DSKTPQLPRGLGGIGMGLGPGGQPISASQLNIGGVMGNLGP 260
Score = 161 (61.7 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 44/181 (24%), Positives = 84/181 (46%)
Query: 102 LFVKNLIESIDNVRLQEMF-QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
+F+ N+ + ++++ + G + ++ +GKS+G G V+F+ EE A+E +
Sbjct: 39 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 98
Query: 161 NGTTVGDKRIYVGRFI--KKSDRVLPSPAAKY-TNLFMKNLDSDVTEEHLVEKFSKFGKI 217
N + + + + + + R L A + + +F+ NLD V + L E FS G +
Sbjct: 99 NKYDLSGRPLNIKEDPDGENARRALQRTAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTV 158
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
I D++G SRG G V F+ +A +A+ NG + + ++ K E
Sbjct: 159 KRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSVPHEDYRS 218
Query: 278 H 278
H
Sbjct: 219 H 219
Score = 137 (53.3 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAV 351
KG+ ++V+N+ D+T ++LK FSQCG + A++ + E G +KG G V F SPE A KA
Sbjct: 532 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKAC 590
Query: 352 NTFHGYMLHRKPLYVAI 368
+G + + + V +
Sbjct: 591 RIMNGIKISGREIDVRL 607
Score = 130 (50.8 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 47/154 (30%), Positives = 70/154 (45%)
Query: 41 VRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDA------ 94
V + KD+ G+S G V F +A+E N L G+ L I DPD
Sbjct: 67 VELFKDAE-GKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK---EDPDGENARRA 122
Query: 95 --RKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETE 150
R +G + +FV NL + +L+E+F G + + +DGKS+G G V FE
Sbjct: 123 LQRTAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQA 182
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP 184
A AI NG + D+ ++V K D+ +P
Sbjct: 183 IEAVQAISMFNGQFLFDRPMHV----KMDDKSVP 212
Score = 130 (50.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
+K +F++NL D+T + L EKFS+ G + I + ENG S+G G V FD+P+ A +A
Sbjct: 531 SKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKA 589
Query: 248 LEAMNGSVIGSK 259
MNG I +
Sbjct: 590 CRIMNGIKISGR 601
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 327 RDEKGINKGFG 337
R + GIN+GFG
Sbjct: 394 RGDIGINRGFG 404
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 240 (89.5 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 67/260 (25%), Positives = 122/260 (46%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + + ++F G +CK+ G + FV+F A AA+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G + K + V S + + + ++F+ +L ++T E + F+ FG+I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 222 IARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK--AEREQILRH 278
+ +D G S+G+GFV+F N DA A++ M G +G + + A +K A + +
Sbjct: 126 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 185
Query: 279 QFEEKRKERILKYKGSN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF 336
+ E + + N VY + +T++ ++ FS G I +V D KG+
Sbjct: 186 TKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGY 240
Query: 337 GFVCFSSPEEASKAVNTFHG 356
F+ FSS E A+ A+ + +G
Sbjct: 241 SFIRFSSHESAAHAIVSVNG 260
Score = 210 (79.0 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 70/272 (25%), Positives = 123/272 (45%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ + ++ D T G Y +V F A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDP-YCFVEFHEHRHAAAAL 63
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESIDNVRLQEMFQNFGNII 127
N ++ GK ++++W+ P ++K +N +FV +L I ++ F FG I
Sbjct: 64 AAMNGRKIMGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 122
Query: 128 SCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
+V GKSKG+GFV F + A AI+ + G +G ++I +K P+P
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP----PAP 178
Query: 187 AAKY-TNLFMKNLDSDVTEEH--------------LVEKFSK--FGKIASLLIARDENGT 229
+ Y +N + D V++ L E+ + F ++ R
Sbjct: 179 KSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF--P 236
Query: 230 SRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+G+ F+ F + + A A+ ++NG+ I V+
Sbjct: 237 DKGYSFIRFSSHESAAHAIVSVNGTTIEGHVV 268
Score = 167 (63.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 52/182 (28%), Positives = 88/182 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NL DVTE +++ FS+ G + + D G + FV F A AL AMN
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 253 G-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G ++G +V ++++ H F +V+V ++ ++T E++K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSNH-F--------------HVFVGDLSPEITTEDIK 112
Query: 312 AHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
A F+ G I+ A+V++D G +KG+GFV F + +A A+ G L + + A
Sbjct: 113 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 172
Query: 371 RK 372
RK
Sbjct: 173 RK 174
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 176 (67.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 51/169 (30%), Positives = 91/169 (53%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L+VGDL + + L FS ++SV+V ++ T +S YG+V FLS A ++
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 73 KNHTQLHG--KMLRISW---SCRDPDARKSGV-ANLFVKNLIESIDNVRLQEMFQN-FGN 125
+ + + + RI+W S + A ++G ++FV +L + +V L E F + + +
Sbjct: 169 YSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPS 228
Query: 126 IISCKVAT-SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG 173
+ S KV S G+SKG+GFV+F E + A+ +NG ++++ VG
Sbjct: 229 VKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG 277
Score = 175 (66.7 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 55/184 (29%), Positives = 92/184 (50%)
Query: 192 NLFMKNLDSDVTEEHLVEKFS-KFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALE 249
++F+ +L DVT+ L E FS ++ + S + D N G S+G+GFV F + ++ RAL
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 250 AMNGSVIGSKVLYAARAQKK---AEREQ------ILR--HQFEEKR---KERILKYKGSN 295
MNG+ ++ + A K A ++Q IL H + + +
Sbjct: 263 EMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNAT 322
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
++V ID DV DE+L+ FSQ G + S K+ + KG GFV F+ + A A+ + +
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP-----VGKGCGFVQFADRKSAEDAIESLN 377
Query: 356 GYML 359
G ++
Sbjct: 378 GTVI 381
Score = 154 (59.3 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 60/207 (28%), Positives = 98/207 (47%)
Query: 204 EEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY 262
E +L FS G+++S+ + R++ S G+GFV F + A L+ +GSV+ +
Sbjct: 121 ETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNS--- 177
Query: 263 AARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS-QCGTIT 321
+ +I F K + +V+V ++ DVTD L FS + ++
Sbjct: 178 -------DQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVK 230
Query: 322 SAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE---DRQA 377
SAKV+ D G +KG+GFV F E S+A+ +G + + V IA K ++Q
Sbjct: 231 SAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQ 290
Query: 378 HLQLQYAQHMAGIEGSSANVIPSGYPS 404
H A +AG GS+ ++ GY S
Sbjct: 291 HSS--QAVILAGGHGSNGSM---GYGS 312
Score = 115 (45.5 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+ +D DV +E L + FS+FG++ S+ I +G GFV F + A A+E++N
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP-----VGKGCGFVQFADRKSAEDAIESLN 377
Query: 253 GSVIGSKVL 261
G+VIG +
Sbjct: 378 GTVIGKNTV 386
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 203 (76.5 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 50/177 (28%), Positives = 95/177 (53%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
LFV NL +I + L +F G ++ K+ +G + + FV+F A A+++ N
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIF--EGLNDPYAFVEFSDHNQATLALQSHN 99
Query: 162 GTTVGDKRIYVG-RFIKKS---DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
G + +K ++V F + +R P +++ ++F+ +L S++ L E F KFG++
Sbjct: 100 GRELLEKEMHVTWAFEPREPGENRSKPE-TSRHFHVFVGDLCSEIDSTKLREAFVKFGEV 158
Query: 218 ASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
+ I RD N +G+GFV++ +DA RA++ MNG+ +G + + A +K + +
Sbjct: 159 SEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDED 215
Score = 196 (74.1 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 49/178 (27%), Positives = 88/178 (49%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +L+V +L P +TD L F++ ++ ++ + G + Y +V F + A A+
Sbjct: 39 PRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQATLAL 95
Query: 71 EVKNHTQLHGKMLRISWSC--RDPDARKSGVA-----NLFVKNLIESIDNVRLQEMFQNF 123
+ N +L K + ++W+ R+P +S ++FV +L ID+ +L+E F F
Sbjct: 96 QSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKF 155
Query: 124 GNIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
G + K+ + K KG+GFV + E A AI+ +NG +G + I +K D
Sbjct: 156 GEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPD 213
Score = 178 (67.7 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 53/207 (25%), Positives = 100/207 (48%)
Query: 169 RIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG 228
R++ R ++ L S + LF+ NLD +T+E L F++ G + I + G
Sbjct: 19 RVHA-RIAEREGFQLASGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFE--G 75
Query: 229 TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
+ + FV F + + A AL++ NG + K ++ A + R E + K
Sbjct: 76 LNDPYAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAFEP-------REPGENRSKPET 128
Query: 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEA 347
++ +V+V ++ ++ +L+ F + G ++ AK++RD KG+GFV + E+A
Sbjct: 129 SRH--FHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDA 186
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQRKED 374
+A++ +G L R+ + A RK D
Sbjct: 187 ERAIDEMNGAWLGRRTIRTNWATRKPD 213
Score = 133 (51.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P + ++VGDL ++ +L +AF +F ++ ++ +D+ T + YG+V++ D
Sbjct: 126 PETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRRED 185
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPD 93
A RAI+ N L + +R +W+ R PD
Sbjct: 186 AERAIDEMNGAWLGRRTIRTNWATRKPD 213
Score = 93 (37.8 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 24/96 (25%), Positives = 49/96 (51%)
Query: 166 GDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD 225
G + Y + K D + AA T++++ N+ +++ E+ + F +FG I + +
Sbjct: 231 GGRDRYHNQSEKTYDEIFNQAAADNTSVYVGNI-ANLGEDEIRRAFDRFGPINEVRTFKI 289
Query: 226 ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+ G+ FV F+ + A RA+ MN + IG +++
Sbjct: 290 Q-----GYAFVKFETKESAARAIVQMNNADIGGQIV 320
Score = 81 (33.6 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
+++V N I ++ ++ F FG I +V T K +G+ FV+FET+ESA AI +
Sbjct: 257 SVYVGN-IANLGEDEIRRAFDRFGPIN--EVRTF---KIQGYAFVKFETKESAARAIVQM 310
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPS 185
N +G + + + K D PS
Sbjct: 311 NNADIGGQIVRCS-WGKSGDSGKPS 334
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 247 (92.0 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 87/332 (26%), Positives = 155/332 (46%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TTP +L++G+L+P+ + EL A SE + + V D TG + +GYV+F S D +
Sbjct: 306 TTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLEK 364
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-LFVKNLIESIDNVRLQEMFQNFGNII 127
A+E+ ++ G +++ + D++K A L KNL +I L+E+F++ I
Sbjct: 365 ALELTG-LKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAMEIR 422
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDRVLP 184
S+DGKSKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 423 ----LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGK 478
Query: 185 SP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ + + L + NL T+E L E F K + + ++ +G +G+ F+ F + +
Sbjct: 479 TSTWSGESKTLVLSNLSYSATKETLEEVFEK---ATFIKVPQNPHGKPKGYAFIEFASFE 535
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF----EEKRKERILK--YKGSNV 296
DA+ AL + N I + + Q R Q + F E E LK ++GS V
Sbjct: 536 DAKEALNSCNKMEIEGRTI-RLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFEGS-V 593
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRD 328
+ + D T F + AK ++
Sbjct: 594 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 625
Score = 238 (88.8 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 75/258 (29%), Positives = 127/258 (49%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + + V S G+S Y+ F S DA + +E
Sbjct: 396 TLLAKNLSFNITEDELKEVFEDAMEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 450
Query: 73 KNHTQLHGKMLRISWSCRDPDARK--------SGVAN-LFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ ++ SG + L + NL S L+E+F+
Sbjct: 451 KQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKA 510
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV + GK KG+ F++F + E A A+ + N + + I + + R
Sbjct: 511 TFI---KVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL-ELQGSNSRSQ 566
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
PS LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +D
Sbjct: 567 PSKT-----LFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEED 619
Query: 244 ARRALEAM-NGSVIGSKV 260
A+ A EAM +G + G+KV
Sbjct: 620 AKAAKEAMEDGEIDGNKV 637
Score = 140 (54.3 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 44/161 (27%), Positives = 77/161 (47%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L KNL ++TE+ L E F +I L+++D G S+G ++ F + DA + LE
Sbjct: 397 LLAKNLSFNITEDELKEVFEDAMEIR--LVSQD--GKSKGIAYIEFKSEADAEKNLEEKQ 452
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G+ I + + +K +R+ E K + + + N+ T E L+
Sbjct: 453 GAEIDGRSVSLYYTGEKGQRQ-------ERTGKTSTWSGESKTLVLSNLSYSATKETLEE 505
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + T KV ++ G KG+ F+ F+S E+A +A+N+
Sbjct: 506 VFEKA---TFIKVPQNPHGKPKGYAFIEFASFEDAKEALNS 543
Score = 105 (42.0 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKA 350
++VK + +D T+E LK F G++ A+++ D E G +KGFGFV F+S E+A A
Sbjct: 571 LFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAA 623
Score = 94 (38.1 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 178 KSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVN 237
K +V S NLF+ NL+ + + L S+ L + GT+R FG+V+
Sbjct: 296 KKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVRTGTNRKFGYVD 355
Query: 238 FDNPDDARRALEAMNGSVIGSKV 260
F++ +D +ALE V G+++
Sbjct: 356 FESAEDLEKALELTGLKVFGNEI 378
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 222 (83.2 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 50/157 (31%), Positives = 87/157 (55%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ R P + ANL+V L +++ L+++F +G I
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYA-R-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162
I+ ++ + G S+G GF++F+ A AI+ LNG
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 208 (78.3 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 55/174 (31%), Positives = 92/174 (52%)
Query: 85 ISWSCRDP-DA--RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSK 140
I+ +C P D+ + NL V L +++ L+ +F + G I SCK+ + G+S
Sbjct: 21 INNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSL 80
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+GFV + + A AI LNG + K I V + + S S + + NL++ L
Sbjct: 81 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPK 134
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG 253
+T++ L + FS++G+I + I D+ G SRG GF+ FD +A A++ +NG
Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 143 (55.4 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 135 (52.6 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T+E L F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 250 AMNGSVIGSKVLYAARAQ 267
+NG + +K + + A+
Sbjct: 99 TLNGLRLQTKTIKVSYAR 116
Score = 110 (43.8 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+ +N+YV + +T +EL+ FSQ G I +++++ D+ GI++G GF+ F EA +A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 351 VNTFHG 356
+ +G
Sbjct: 183 IKGLNG 188
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 240 (89.5 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 80/316 (25%), Positives = 153/316 (48%)
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN--IISCKV 131
NH LH + S + +A ++V +L +D L F + I+S KV
Sbjct: 79 NHHHLHHQ----SRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKV 134
Query: 132 ATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDK----RIYVGRFIKKSDRVLPSP 186
+++ G S+G+GFV+FE+ + A+ + NGTT+ + R+ F ++ L +
Sbjct: 135 IRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASF-STGEKRLENN 193
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFS-KFGKIASLLIARDEN-GTSRGFGFVNFDNPDDA 244
+ +F+ +L DV++ L E FS K+ + + + D N G S+G+GFV F + ++
Sbjct: 194 GPDLS-IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENER 252
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG----SNVYVKN 300
+A+ MNG S+ + A + + + Q + + +G + ++V
Sbjct: 253 TKAMTEMNGVKCSSRAMRIGPATPR--KTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGG 310
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+D VTDE+LK F++ G I S K+ + KG GFV F + A +A+ +G ++
Sbjct: 311 LDSSVTDEDLKQPFNEFGEIVSVKIP-----VGKGCGFVQFVNRPNAEEALEKLNGTVIG 365
Query: 361 RKPLYVAIAQRKEDRQ 376
++ + ++ + ++Q
Sbjct: 366 KQTVRLSWGRNPANKQ 381
Score = 162 (62.1 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 52/176 (29%), Positives = 88/176 (50%)
Query: 13 SLYVGDLHPDVTDGELFDAFSE-FKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
S++VGDL PDV+D L + FSE + S+ + +V D+ TGRS YG+V F ++ +A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 72 VKNHTQLHGKMLRISWSC-RD-----------PDA---RKSG-VANLFVKNLIESIDN-V 114
N + + +RI + R P+ R G + N + + +D+ V
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTI--FVGGLDSSV 315
Query: 115 RLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
+++ Q F ++ + + KG GFVQF +A A+E LNGT +G + +
Sbjct: 316 TDEDLKQPFNEF--GEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTV 369
Score = 161 (61.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 47/172 (27%), Positives = 88/172 (51%)
Query: 13 SLYVGDLHPDVTDGELFDAFS--EFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD-AIRA 69
+++VGDLH + + L +F+ + + + SV+V ++ G S YG+V F S HD A +
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFES-HDVADKV 160
Query: 70 IEVKNHTQLHG--KMLRISW---SCRDPDARKSGV-ANLFVKNLIESIDNVRLQEMF-QN 122
+ N T + + R++W S + +G ++FV +L + + L E F +
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 123 FGNIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG 173
+ ++ + KV + G+SKG+GFV+F E A+ +NG + + +G
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIG 272
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 232 (86.7 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 53/171 (30%), Positives = 92/171 (53%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++Y+G+L VTD LF+ + + ++ + +D +G+ FL D A +
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC-K 130
+ N +L GK +R++ + +D ANLFV NL +D L + F G ++ +
Sbjct: 71 ILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQ 130
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
VA E+G+SKG+GFV +++ E+A+AAIE +N + +K I V K+ +
Sbjct: 131 VARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGK 181
Score = 204 (76.9 bits), Expect = 9.4e-14, P = 9.4e-14
Identities = 59/178 (33%), Positives = 91/178 (51%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKS-KGHGFVQFETEESANAAIE 158
A +++ NL E + + L E+ G +++ + S G GF +F E+ A +
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ 70
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
LN + K I V R DR + + NLF+ NLD V E L + FS G++
Sbjct: 71 ILNQVKLFGKPIRVNR--ASQDRGVNTLIG--ANLFVGNLDPLVDERVLYDTFSALGQLV 126
Query: 219 SL-LIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK---VLYAARAQKKAER 272
+ARDENG S+G+GFV++D+ + A A+EAMN + +K V YA + + K ER
Sbjct: 127 KAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGER 184
Score = 196 (74.1 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 64/232 (27%), Positives = 105/232 (45%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
+++ NLD VT+ L E + G + ++ I RD + GFGF F + D A + +
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + K + RA +++ ++ G+N++V N+D V + L
Sbjct: 73 NQVKLFGKPIRVNRAS-------------QDRGVNTLI---GANLFVGNLDPLVDERVLY 116
Query: 312 AHFSQCGTITSA-KVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G + A +V RDE G +KG+GFV + S E A A+ + L KP+ V+ A
Sbjct: 117 DTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAF 176
Query: 371 RKEDR-QAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 421
++E + + H + + A + + V P T PPG S P P
Sbjct: 177 KREGKGERHGDIAERKLAAAAKKNKVAVTPQS------TLPPGF-SPATPAP 221
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 237 (88.5 bits), Expect = 3.8e-17, P = 3.8e-17
Identities = 79/341 (23%), Positives = 155/341 (45%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED-GKSKGHGFVQFETE 150
P + V +L++ +L +D L F + G ++S KV ++ G+S+G+GF++F +
Sbjct: 76 PTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSH 135
Query: 151 ESANAAIENLNGTTVGD-KRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
+A ++ NGT + + ++ + + +A++T +F+ +L +DVT+ L E
Sbjct: 136 AAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHT-IFVGDLAADVTDYILQE 194
Query: 210 KF-SKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA- 266
F S + + + D G S+G+GFV F + + RA+ MNG + ++ + A
Sbjct: 195 TFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAA 254
Query: 267 -QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
+K Q +Q + + + ++V +D V +E L+ FS G + K+
Sbjct: 255 NKKPVGTPQKATYQNPQATQGES-DPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKI 313
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+ K GFV F + A +A+++ +G L + + ++ + +Q Q Q+
Sbjct: 314 VA-----GKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQTD-QTQWGG 367
Query: 386 HMAGIEGSSANVIPSGY------PSLYYTTPPGIVSQVPPR 420
G GY P++YY PG + P+
Sbjct: 368 SGGAYYGYGQGYEAYGYAPPAQDPNMYYGNYPGYANYQQPQ 408
Score = 194 (73.4 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 68/264 (25%), Positives = 117/264 (44%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SL++GDL + + L F L S +V ++ TG+S YG++ F S A ++
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 73 KNHTQLHG--KMLRISWSCRDPDARKSGVAN--LFVKNLIESIDNVRLQEMFQN-FGNII 127
N T + + R++W+ R+ A +FV +L + + LQE F++ + ++
Sbjct: 145 YNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVR 204
Query: 128 SCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
KV T G+SKG+GFV+F E A+ +NG + + +G K P
Sbjct: 205 GAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQK 264
Query: 187 AAKYTNLFMKNLDSDVT---------EEHLVEKFSK--FGKIASLLIARDENGTSRGFGF 235
A Y N +SD + + E+ + F L+ + G + GF
Sbjct: 265 AT-YQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAG--KRCGF 321
Query: 236 VNFDNPDDARRALEAMNGSVIGSK 259
V F A +AL ++NG+ +G +
Sbjct: 322 VQFGTRASAEQALSSLNGTQLGGQ 345
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 54/176 (30%), Positives = 85/176 (48%)
Query: 13 SLYVGDLHPDVTDGELFDAF-SEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++VGDL DVTD L + F S + S+ +V D TGRS YG+V F + +RA+
Sbjct: 177 TIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMT 236
Query: 72 VKNHTQLHGKMLRISWSC-------------RDPDARK--SGVAN--LFVKNLIESIDNV 114
N + +RI + ++P A + S N +FV L ++
Sbjct: 237 EMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEE 296
Query: 115 RLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
L+++F +G ++ K+ K GFVQF T SA A+ +LNGT +G + I
Sbjct: 297 HLRQVFSPYGELVHVKIVAG-----KRCGFVQFGTRASAEQALSSLNGTQLGGQSI 347
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 154 (59.3 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 46/152 (30%), Positives = 73/152 (48%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+VG + + + +L F +F + + V KD TG ++ + + A++A +
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA-QSA 67
Query: 74 NHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
H Q L G I D ++R G LFV L + + +++MF+ FG I C V
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR--GDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 125
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
DG SKG FV+F+T A AAI L+ +
Sbjct: 126 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 157
Score = 134 (52.2 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
N+F+ +L + T+ +++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 441 MNGFQIGMKRLKVQLKRPKDANR 463
Score = 127 (49.8 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 47/168 (27%), Positives = 75/168 (44%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
++PDA K LFV + ++ L+ +F+ FG I V + G KG F+ +
Sbjct: 2 KEPDAIK-----LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYC 56
Query: 149 TEESANAAIENLNG--TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
+SA A L+ T G R +K +D S + LF+ L T+E
Sbjct: 57 ARDSALKAQSALHEQKTLPGMNRPIQ---VKPAD----SESRGDRKLFVGMLGKQQTDED 109
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
+ + F FG I + R +GTS+G FV F +A+ A+ ++ S
Sbjct: 110 VRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 157
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
N+F+ +L + + + +MF FG++IS KV +SK GFV F+ SA AAI+
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 160 LNGTTVGDKRIYV 172
+NG +G KR+ V
Sbjct: 441 MNGFQIGMKRLKV 453
Score = 125 (49.1 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 31/114 (27%), Positives = 59/114 (51%)
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
L A + +++Q + Q ++++++R G N+++ ++ + TD E+ F G +
Sbjct: 348 LVAQQPPPPPQQQQQQQQQQQQQQQQREGP-DGCNIFIYHLPQEFTDSEILQMFVPFGHV 406
Query: 321 TSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373
SAKV D +K FGFV F +P A A+ +G+ + K L V + + K+
Sbjct: 407 ISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 460
Score = 52 (23.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 379 LQLQYA--QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 421
LQ YA QH ++ +++ +P PP +V+Q PP P
Sbjct: 317 LQQAYAGMQHYTAAYPAAYSLVAPAFPQ-----PPALVAQQPPPP 356
Score = 37 (18.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPD 566
+P L P P+QQ+Q ++ ++ PD
Sbjct: 344 QPPALVAQQPPPPPQQQQQQQQQQQQQQQQREGPD 378
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 233 (87.1 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 66/260 (25%), Positives = 123/260 (47%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + + ++F G +CK+ G + FV+F A +A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G + K + V S + + + ++F+ +L ++T E + F+ FG+I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 222 IARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK--AEREQILRH 278
+ +D G S+G+GFV+F N DA A++ M G +G + + A +K A + +
Sbjct: 126 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 185
Query: 279 QFEEKRKERILKYKGSN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF 336
+ + + + SN VY + +T++ ++ FS G I +V D KG+
Sbjct: 186 TKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGY 240
Query: 337 GFVCFSSPEEASKAVNTFHG 356
FV F+S E A+ A+ + +G
Sbjct: 241 SFVRFNSHESAAHAIVSVNG 260
Score = 215 (80.7 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 72/271 (26%), Positives = 124/271 (45%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ + ++ D T G Y +V F A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDP-YCFVEFYEHRHAASAL 63
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESIDNVRLQEMFQNFGNII 127
N ++ GK ++++W+ P ++K +N +FV +L I ++ F FG I
Sbjct: 64 AAMNGRKIMGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 122
Query: 128 SCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
+V GKSKG+GFV F + A AI+ + G +G ++I +K P+P
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP----PAP 178
Query: 187 AAKY-TNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENGT--------------S 230
+ Y +N + D DV + + + G + S L + T
Sbjct: 179 KSTYESNTKQLSYD-DVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 237
Query: 231 RGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+G+ FV F++ + A A+ ++NG+ I V+
Sbjct: 238 KGYSFVRFNSHESAAHAIVSVNGTTIEGHVV 268
Score = 165 (63.1 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 52/182 (28%), Positives = 88/182 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NL DVTE +++ FS+ G + + D G + FV F A AL AMN
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 253 G-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G ++G +V ++++ H F +V+V ++ ++T E++K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSNH-F--------------HVFVGDLSPEITTEDIK 112
Query: 312 AHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
A F+ G I+ A+V++D G +KG+GFV F + +A A+ G L + + A
Sbjct: 113 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 172
Query: 371 RK 372
RK
Sbjct: 173 RK 174
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 230 (86.0 bits), Expect = 7.5e-17, P = 7.5e-17
Identities = 69/261 (26%), Positives = 121/261 (46%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + + ++F G SCK+ G + FV+F A AA+ +N
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAAALAAMN 69
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G + K + V S + + + ++F+ +L +++ + + F+ FGKI+
Sbjct: 70 GRKILGKDMKVNWASTPSSQ--KKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDAR 127
Query: 222 IARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
+ +D G S+G+GF++F N DA A++ MNG +G + + A +K +
Sbjct: 128 VVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGA 187
Query: 281 EEKRK--ERILKYKG-SN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG 335
K E +L SN VY I ++D+ ++ FS G I +V + KG
Sbjct: 188 SSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPE-----KG 242
Query: 336 FGFVCFSSPEEASKAVNTFHG 356
+ FV F S E A+ A+ + +G
Sbjct: 243 YSFVRFDSHEGAAHAIVSVNG 263
Score = 223 (83.6 bits), Expect = 5.6e-16, P = 5.6e-16
Identities = 72/293 (24%), Positives = 133/293 (45%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ S ++ D TTG Y +V F A A+
Sbjct: 8 PRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILD-TTGNDP-YCFVEFYENRHAAAAL 65
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESIDNVRLQEMFQNFGNII 127
N ++ GK ++++W+ P ++K +N +FV +L I ++ F FG I
Sbjct: 66 AAMNGRKILGKDMKVNWAST-PSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKIS 124
Query: 128 SCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK------SD 180
+V GKSKG+GF+ F + A +AI+ +NG +G ++I +K ++
Sbjct: 125 DARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNN 184
Query: 181 RVLPSPAAKYTNLFMKNLDSDVT------EEHLVEKFSK--FGKIASLLIARDENGTSRG 232
S Y + ++ S+ T L ++ + F ++ R +G
Sbjct: 185 EGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVF--PEKG 242
Query: 233 FGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRK 285
+ FV FD+ + A A+ ++NG+ I + ++ A+ + + ++ K
Sbjct: 243 YSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYWGKETADMRSMQQMPMPQQNK 295
Score = 159 (61.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 49/181 (27%), Positives = 88/181 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NL DVTE +++ FS+ G S + D G + FV F A AL AMN
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAAALAAMN 69
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I K + A + +++ + F +V+V ++ +++ ++++A
Sbjct: 70 GRKILGKDMKVNWASTPSSQKKDTSNHF--------------HVFVGDLSPEISTDDVRA 115
Query: 313 HFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F+ G I+ A+V++D G +KG+GF+ F + +A A+ +G L + + A R
Sbjct: 116 AFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATR 175
Query: 372 K 372
K
Sbjct: 176 K 176
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 216 (81.1 bits), Expect = 8.2e-17, P = 8.2e-17
Identities = 80/278 (28%), Positives = 128/278 (46%)
Query: 108 IESIDNVRLQEMFQ-NFGNIISCKVATSEDGKSK----GHGFVQFETEESANAAIENLNG 162
I SI N+ E + NF ++ S V + KSK V F ++ S A E
Sbjct: 26 IPSIFNISSSESHRFNF-SLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSNWAEEEEGED 84
Query: 163 TTVGDKRIYVGRFIKKSDRV-LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFG--KIAS 219
++G + V + D V P P + LF+ NL DV + L F + G +I+
Sbjct: 85 GSIGGTSVTVDESFESEDGVGFPEPPEE-AKLFVGNLPYDVDSQALAMLFEQAGTVEISE 143
Query: 220 LLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQ 279
++ RD + SRGFGFV ++A +A+E N + + L RA + R +
Sbjct: 144 VIYNRDTD-QSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE----- 197
Query: 280 FEEKRKERILKYKGS-NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFG 337
R+ R+ Y + +YV N+ DV L+ FS+ G + A+V+ D E G ++GFG
Sbjct: 198 ----RQPRV--YDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFG 251
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
FV S+ E + A+ G L + + V +A+ + R
Sbjct: 252 FVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 212 (79.7 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 54/177 (30%), Positives = 84/177 (47%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED-GKSKGHGFVQFETEESANAAIE 158
A LFV NL +D+ L +F+ G + +V + D +S+G GFV T E A A+E
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT--NLFMKNLDSDVTEEHLVEKFSKFGK 216
N V +R+ V R + R P +++ NL DV L FS+ GK
Sbjct: 173 KFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGK 232
Query: 217 IASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
+ + D E G SRGFGFV N ++ A+ A++G + + + A+++ R
Sbjct: 233 VVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
Score = 175 (66.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 48/174 (27%), Positives = 85/174 (48%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P A L+VG+L DV L F + ++ V + T +S +G+V + +
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 66 AIRAIEVKNHTQLHGKMLRISWSC-RD--PDARK---SGVANLFVKNLIESIDNVRLQEM 119
A +A+E N +++G+ L ++ + R P+ + ++V NL +D+ RL+ +
Sbjct: 167 AEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERL 226
Query: 120 FQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV 172
F G ++ +V + E G+S+G GFVQ E N AI L+G + + I V
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 160 (61.4 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
Identities = 48/166 (28%), Positives = 78/166 (46%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
A +P L++G + ++ + +L F EF + + V KD TG ++ +
Sbjct: 37 ATIPMKDHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYC 96
Query: 62 SPHDAIRAIEVKNHTQ--LHGKMLRISWSCRDPDARKSGVANLFVK--NLIESIDNVRLQ 117
+ A++A + H Q L G I D ++R LFV N + D+VR
Sbjct: 97 ARESALKA-QTALHEQKTLPGMNRPIQVKPADSESRGED-RKLFVGMLNKQQCEDDVR-- 152
Query: 118 EMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
+F++FG+I C + DG SKG FV++ T A AAI L+G+
Sbjct: 153 RLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGS 198
Score = 139 (54.0 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 92 PDARKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
P ++ G NLF+ +L + + L +MF FGN+IS KV +SK GFV F+
Sbjct: 425 PQQQREGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFD 484
Query: 149 TEESANAAIENLNGTTVGDKRIYV 172
SA AAI+++NG +G KR+ V
Sbjct: 485 NPGSAQAAIQSMNGFQIGMKRLKV 508
Score = 134 (52.2 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 43/171 (25%), Positives = 75/171 (43%)
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQ 146
SC + LF+ + ++D L+ +F+ FG I V G KG F+
Sbjct: 35 SCATIPMKDHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLT 94
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA---AKYTNLFMKNLDSDVT 203
+ ESA A T + +++ G + + +V P+ + + LF+ L+
Sbjct: 95 YCARESALKA-----QTALHEQKTLPG--MNRPIQVKPADSESRGEDRKLFVGMLNKQQC 147
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
E+ + F FG I I R +G S+G FV + +A+ A+ A++GS
Sbjct: 148 EDDVRRLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGS 198
Score = 127 (49.8 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
NLF+ +L + + L++ F FG + S + D S+ FGFV+FDNP A+ A+++
Sbjct: 436 NLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 495
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 496 MNGFQIGMKRLKVQLKRPKDANR 518
Score = 111 (44.1 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G N+++ ++ + D EL F G + S+KV D +K FGFV F +P A A
Sbjct: 433 EGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAA 492
Query: 351 VNTFHGYMLHRKPLYVAIAQRKE 373
+ + +G+ + K L V + + K+
Sbjct: 493 IQSMNGFQIGMKRLKVQLKRPKD 515
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 155 (59.6 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 46/152 (30%), Positives = 70/152 (46%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+VG + ++ + +L F +F + + V KD TG ++ + + AI+A +
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKA-QTA 105
Query: 74 NHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
H Q L G I D ++R LFV L + + +FQ FG I C V
Sbjct: 106 LHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTV 165
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
DG SKG FV+F + A AAI L+G+
Sbjct: 166 LRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS 197
Score = 145 (56.1 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 48/167 (28%), Positives = 76/167 (45%)
Query: 92 PDARKS-GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
PD K LFV + ++D L+ +F+ FG I V G KG F+ +
Sbjct: 36 PDGMKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCA 95
Query: 150 EESANAAIENLNG--TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHL 207
+SA A L+ T G R +K +D S + LF+ L+ +EE +
Sbjct: 96 RDSAIKAQTALHEQKTLPGMARPIQ---VKPADS--ESRGGRDRKLFVGMLNKQQSEEDV 150
Query: 208 VEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
+ F FG I + R +G+S+G FV F + +A+ A+ A++GS
Sbjct: 151 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS 197
Score = 133 (51.9 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NLF+ +L + + L +MF FGNIIS KV +SK GFV F+ SA AI+
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQA 460
Query: 160 LNGTTVGDKRIYV 172
+NG +G KR+ V
Sbjct: 461 MNGFQIGMKRLKV 473
Score = 131 (51.2 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 30/71 (42%), Positives = 41/71 (57%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
NLF+ +L + + L + F FG I S + D S+ FGFV+FDNP A+ A++A
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQA 460
Query: 251 MNGSVIGSKVL 261
MNG IG K L
Sbjct: 461 MNGFQIGMKRL 471
Score = 119 (46.9 bits), Expect = 0.00073, P = 0.00073
Identities = 45/165 (27%), Positives = 74/165 (44%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ + ++ E+ L F +FG+I L + +D G +G F+ + D A +A A+
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ K L A Q+ + E R R K ++V ++ ++E++
Sbjct: 107 HEQ----KTLPGM-----ARPIQV-KPADSESRGGRDRK-----LFVGMLNKQQSEEDVL 151
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
F G I V+R G +KG FV FSS EA A++ HG
Sbjct: 152 RLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 196
Score = 115 (45.5 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G N+++ ++ + D EL F G I S+KV D +K FGFV F +P A A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTA 457
Query: 351 VNTFHGYMLHRKPLYVAIAQRKE 373
+ +G+ + K L V + + K+
Sbjct: 458 IQAMNGFQIGMKRLKVQLKRPKD 480
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 150 (57.9 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 45/152 (29%), Positives = 72/152 (47%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+VG + + + +L F +F + + V KD TG ++ + + A++A +
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA-QSA 67
Query: 74 NHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
H Q L G I D ++R LFV L + + +++MF+ FG I C V
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGED-RKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
DG SKG FV+F+T A AAI L+ +
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 158
Score = 134 (52.2 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
N+F+ +L + T+ +++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 331 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 390
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 391 MNGFQIGMKRLKVQLKRPKDANR 413
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 65/275 (23%), Positives = 106/275 (38%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ + + E+ L F +FG+I L + +D+ G +G F+ + D A +A A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ K L Q+ E + ++R L +V + TDE+++
Sbjct: 69 HEQ----KTLPGMNRPI-----QVKPADSESRGEDRKL-------FVGMLGKQQTDEDVR 112
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML---HRKPLYVAI 368
F GTI V+R G +KG FV F + EA A+NT H L V
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKF 172
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANV-IPSGYPSLYYTTPPGIVSQ----VPPRPGL 423
A +++R Q A + + S Y +V+ + P +
Sbjct: 173 ADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATM 232
Query: 424 MYQPLGLRTGWRANGFVP-PTRPAFQVSPL-PVNP 456
+ ANG + P P+ SP PV+P
Sbjct: 233 AAVQMQHMAAINANGLIATPITPSSAQSPAAPVDP 267
Score = 126 (49.4 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
N+F+ +L + + + +MF FG++IS KV +SK GFV F+ SA AAI+
Sbjct: 331 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 390
Query: 160 LNGTTVGDKRIYV 172
+NG +G KR+ V
Sbjct: 391 MNGFQIGMKRLKV 403
Score = 122 (48.0 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 28/102 (27%), Positives = 54/102 (52%)
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-G 331
+Q + Q +++++++ G N+++ ++ + TD E+ F G + SAKV D
Sbjct: 309 QQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATN 368
Query: 332 INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373
+K FGFV F +P A A+ +G+ + K L V + + K+
Sbjct: 369 QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 410
Score = 52 (23.4 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 379 LQLQYA--QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 421
LQ YA QH ++ +++ +P PP +V+Q PP P
Sbjct: 268 LQQAYAGMQHYTAAYPAAYSLVAPAFPQ-----PPALVAQQPPPP 307
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 215 (80.7 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 62/243 (25%), Positives = 112/243 (46%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + + ++F G +CK+ G + FV+F A AA+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G + K + V S + + + ++F+ +L ++T E + F+ FG+I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 222 IARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK--AEREQILRH 278
+ +D G S+G+GFV+F N DA A++ M G +G + + A +K A + +
Sbjct: 126 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 185
Query: 279 QFEEKRKERILKYKGSN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF 336
+ E + + SN VY + +T++ ++ FS G I +V D KG+
Sbjct: 186 TKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGY 240
Query: 337 GFV 339
FV
Sbjct: 241 SFV 243
Score = 198 (74.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 57/199 (28%), Positives = 95/199 (47%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ + ++ D T G Y +V F A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDP-YCFVEFHEHRHAAAAL 63
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESIDNVRLQEMFQNFGNII 127
N ++ GK ++++W+ P ++K +N +FV +L I ++ F FG I
Sbjct: 64 AAMNGRKIMGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 122
Query: 128 SCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
+V GKSKG+GFV F + A AI+ + G +G ++I +K P+P
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP----PAP 178
Query: 187 AAKY-TNLFMKNLDSDVTE 204
+ Y +N + D V +
Sbjct: 179 KSTYESNTKQLSYDEVVNQ 197
Score = 167 (63.8 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 52/182 (28%), Positives = 88/182 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NL DVTE +++ FS+ G + + D G + FV F A AL AMN
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 253 G-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G ++G +V ++++ H F +V+V ++ ++T E++K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSNH-F--------------HVFVGDLSPEITTEDIK 112
Query: 312 AHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
A F+ G I+ A+V++D G +KG+GFV F + +A A+ G L + + A
Sbjct: 113 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 172
Query: 371 RK 372
RK
Sbjct: 173 RK 174
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 231 (86.4 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 80/308 (25%), Positives = 138/308 (44%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGK----SKGHG-----------FV 145
L+V NL + V + ++F G SCK+ T + D + S G FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 146 QFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEE 205
+F A AA+ +NG + K + V S + + + ++F+ +L ++T E
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTE 128
Query: 206 HLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL--- 261
+ F+ FGKI+ + +D G S+G+GFV+F N DA A+ M G +G + +
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 262 YAAR---AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCG 318
+A R A K + + +FE+ + K VY I +TD+ ++ FS G
Sbjct: 189 WATRKPPAPKSTQETNTKQLRFEDVVNQS--SPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
I +V + KG+ FV FS+ E A+ A+ + +G + + + D +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 301
Query: 379 LQ-LQYAQ 385
Q + Y+Q
Sbjct: 302 FQQVDYSQ 309
Score = 192 (72.6 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 57/168 (33%), Positives = 84/168 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL-IESIDNVRLQEMFQNF-GNIIS--- 128
L G+ +R +W+ R P A KS K L E + N + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 129 ---CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F T ESA AI ++NGTT+
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 166 (63.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 60/227 (26%), Positives = 102/227 (44%)
Query: 55 YGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESI 111
Y +V F DA A+ N ++ GK ++++W+ P ++K +N +FV +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEI 125
Query: 112 DNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
++ F FG I +V GKSKG+GFV F + A AI ++ G +G ++I
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 171 YVGRFIKKSDRVLPSP-AAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENG 228
+K P+P + + TN + DV + + + + G IAS L +
Sbjct: 186 RTNWATRKP----PAPKSTQETNTKQLRFE-DVVNQSSPKNCTVYCGGIASGLTDQLMRQ 240
Query: 229 T--------------SRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
T +G+ FV F + A A+ ++NG+ I V+
Sbjct: 241 TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 232 (86.7 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 69/269 (25%), Positives = 126/269 (46%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + + ++F G +CK+ G + FV+F A AA+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 162 GTTVGDKRIYVGRFI-----KK---SDRVLPSPAAK-YTNLFMKNLDSDVTEEHLVEKFS 212
G + K + V KK S V+ + ++ + ++F+ +L ++T E + F+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 213 KFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
FG+I+ + +D G S+G+GFV+F N DA A++ M G +G + + A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 272 R-EQILRHQFEEKRKERILKYKGSN---VYVKNIDDDVTDEELKAHFSQCGTITSAKVMR 327
+ ++ + ++ N VY + +T++ ++ FS G I +V
Sbjct: 188 APKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 328 DEKGINKGFGFVCFSSPEEASKAVNTFHG 356
D KG+ FV FSS E A+ A+ + +G
Sbjct: 248 D-----KGYSFVRFSSHESAAHAIVSVNG 271
Score = 193 (73.0 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 58/170 (34%), Positives = 86/170 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF----GNIIS- 128
L G+ +R +W+ R P A KS + K L S D V Q N G + S
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESN-TKQL--SYDEVVSQSSPNNCTVYCGGVTSG 224
Query: 129 -----CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F + ESA AI ++NGTT+
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTI 274
Score = 176 (67.0 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 58/209 (27%), Positives = 95/209 (45%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ + ++ D T G Y +V F A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDP-YCFVEFHEHRHAAAAL 63
Query: 71 EVKNHTQLHGKMLRISW----SCRDPDARKSGVAN---------LFVKNLIESIDNVRLQ 117
N ++ GK ++++W S + D S V + +FV +L I ++
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIK 123
Query: 118 EMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
F FG I +V GKSKG+GFV F + A AI+ + G +G ++I
Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 177 KKSDRVLPSPAAKY-TNLFMKNLDSDVTE 204
+K P+P + Y +N + D V++
Sbjct: 184 RKP----PAPKSTYESNTKQLSYDEVVSQ 208
Score = 174 (66.3 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 50/182 (27%), Positives = 89/182 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NL DVTE +++ FS+ G + + D G + FV F A AL AMN
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 253 G-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G ++G +V ++++ ++ + +V+V ++ ++T E++K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQ----DHFHVFVGDLSPEITTEDIK 123
Query: 312 AHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
A F+ G I+ A+V++D G +KG+GFV F + +A A+ G L + + A
Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 371 RK 372
RK
Sbjct: 184 RK 185
Score = 146 (56.5 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 46/178 (25%), Positives = 81/178 (45%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIEN 159
++FV +L I ++ F FG I +V GKSKG+GFV F + A AI+
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 160 LNGTTVGDKRIYVGRFIKKS----------------DRVLPSPAAKYTNLFMKNLDSDVT 203
+ G +G ++I +K D V+ + ++ + S +T
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLT 226
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
E+ + + FS FG+I + + D +G+ FV F + + A A+ ++NG+ I V+
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNGTTIEGHVV 279
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 232 (86.7 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 80/308 (25%), Positives = 138/308 (44%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGK----SKGHG-----------FV 145
L+V NL + V + ++F G SCK+ T + D + S G FV
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 69
Query: 146 QFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEE 205
+F A AA+ +NG + K + V S + + + ++F+ +L ++T E
Sbjct: 70 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTE 127
Query: 206 HLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL--- 261
+ F+ FGKI+ + +D G S+G+GFV+F N DA A+ M G +G + +
Sbjct: 128 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 187
Query: 262 YAAR---AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCG 318
+A R A K + + +FE+ + K VY I +TD+ ++ FS G
Sbjct: 188 WATRKPPAPKSTQENNTKQLRFEDVVNQS--SPKNCTVYCGGIASGLTDQLMRQTFSPFG 245
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
I +V + KG+ FV FS+ E A+ A+ + +G + + + D +
Sbjct: 246 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 300
Query: 379 LQ-LQYAQ 385
Q + Y+Q
Sbjct: 301 FQQVDYSQ 308
Score = 196 (74.1 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 56/167 (33%), Positives = 84/167 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF-GNIIS---- 128
L G+ +R +W+ R P A KS N + E + N + + G I S
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 234
Query: 129 --CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F T ESA AI ++NGTT+
Sbjct: 235 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 281
Score = 167 (63.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 59/226 (26%), Positives = 100/226 (44%)
Query: 55 YGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESI 111
Y +V F DA A+ N ++ GK ++++W+ P ++K +N +FV +L I
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEI 124
Query: 112 DNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
++ F FG I +V GKSKG+GFV F + A AI ++ G +G ++I
Sbjct: 125 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 184
Query: 171 YVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENGT 229
+K P+P + N + DV + + + + G IAS L + T
Sbjct: 185 RTNWATRKP----PAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQT 240
Query: 230 --------------SRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+G+ FV F + A A+ ++NG+ I V+
Sbjct: 241 FSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 286
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 231 (86.4 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 80/308 (25%), Positives = 138/308 (44%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGK----SKGHG-----------FV 145
L+V NL + V + ++F G SCK+ T + D + S G FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 146 QFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEE 205
+F A AA+ +NG + K + V S + + + ++F+ +L ++T E
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTE 128
Query: 206 HLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL--- 261
+ F+ FGKI+ + +D G S+G+GFV+F N DA A+ M G +G + +
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 262 YAAR---AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCG 318
+A R A K + + +FE+ + K VY I +TD+ ++ FS G
Sbjct: 189 WATRKPPAPKSTQETNTKQLRFEDVVNQS--SPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
I +V + KG+ FV FS+ E A+ A+ + +G + + + D +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 301
Query: 379 LQ-LQYAQ 385
Q + Y+Q
Sbjct: 302 FQQVDYSQ 309
Score = 192 (72.6 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 57/168 (33%), Positives = 84/168 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL-IESIDNVRLQEMFQNF-GNIIS--- 128
L G+ +R +W+ R P A KS K L E + N + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 129 ---CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F T ESA AI ++NGTT+
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 166 (63.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 60/227 (26%), Positives = 102/227 (44%)
Query: 55 YGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESI 111
Y +V F DA A+ N ++ GK ++++W+ P ++K +N +FV +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEI 125
Query: 112 DNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
++ F FG I +V GKSKG+GFV F + A AI ++ G +G ++I
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 171 YVGRFIKKSDRVLPSP-AAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENG 228
+K P+P + + TN + DV + + + + G IAS L +
Sbjct: 186 RTNWATRKP----PAPKSTQETNTKQLRFE-DVVNQSSPKNCTVYCGGIASGLTDQLMRQ 240
Query: 229 T--------------SRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
T +G+ FV F + A A+ ++NG+ I V+
Sbjct: 241 TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 232 (86.7 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 80/308 (25%), Positives = 138/308 (44%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGK----SKGHG-----------FV 145
L+V NL + V + ++F G SCK+ T + D + S G FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 146 QFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEE 205
+F A AA+ +NG + K + V S + + + ++F+ +L ++T E
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTE 128
Query: 206 HLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL--- 261
+ F+ FGKI+ + +D G S+G+GFV+F N DA A+ M G +G + +
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 262 YAAR---AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCG 318
+A R A K + + +FE+ + K VY I +TD+ ++ FS G
Sbjct: 189 WATRKPPAPKSTQENNTKQLRFEDVVNQS--SPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
I +V + KG+ FV FS+ E A+ A+ + +G + + + D +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 301
Query: 379 LQ-LQYAQ 385
Q + Y+Q
Sbjct: 302 FQQVDYSQ 309
Score = 196 (74.1 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 56/167 (33%), Positives = 84/167 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF-GNIIS---- 128
L G+ +R +W+ R P A KS N + E + N + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 129 --CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F T ESA AI ++NGTT+
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 167 (63.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 59/226 (26%), Positives = 100/226 (44%)
Query: 55 YGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESI 111
Y +V F DA A+ N ++ GK ++++W+ P ++K +N +FV +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEI 125
Query: 112 DNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
++ F FG I +V GKSKG+GFV F + A AI ++ G +G ++I
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 171 YVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENGT 229
+K P+P + N + DV + + + + G IAS L + T
Sbjct: 186 RTNWATRKP----PAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQT 241
Query: 230 --------------SRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+G+ FV F + A A+ ++NG+ I V+
Sbjct: 242 FSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 232 (86.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 80/308 (25%), Positives = 138/308 (44%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGK----SKGHG-----------FV 145
L+V NL + V + ++F G SCK+ T + D + S G FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 146 QFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEE 205
+F A AA+ +NG + K + V S + + + ++F+ +L ++T E
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTE 128
Query: 206 HLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL--- 261
+ F+ FGKI+ + +D G S+G+GFV+F N DA A+ M G +G + +
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 262 YAAR---AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCG 318
+A R A K + + +FE+ + K VY I +TD+ ++ FS G
Sbjct: 189 WATRKPPAPKSTQENNTKQLRFEDVVNQS--SPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
I +V + KG+ FV FS+ E A+ A+ + +G + + + D +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 301
Query: 379 LQ-LQYAQ 385
Q + Y+Q
Sbjct: 302 FQQVDYSQ 309
Score = 196 (74.1 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 56/167 (33%), Positives = 84/167 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF-GNIIS---- 128
L G+ +R +W+ R P A KS N + E + N + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 129 --CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F T ESA AI ++NGTT+
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 167 (63.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 59/226 (26%), Positives = 100/226 (44%)
Query: 55 YGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESI 111
Y +V F DA A+ N ++ GK ++++W+ P ++K +N +FV +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEI 125
Query: 112 DNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
++ F FG I +V GKSKG+GFV F + A AI ++ G +G ++I
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 171 YVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENGT 229
+K P+P + N + DV + + + + G IAS L + T
Sbjct: 186 RTNWATRKP----PAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQT 241
Query: 230 --------------SRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+G+ FV F + A A+ ++NG+ I V+
Sbjct: 242 FSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 232 (86.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 80/308 (25%), Positives = 138/308 (44%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGK----SKGHG-----------FV 145
L+V NL + V + ++F G SCK+ T + D + S G FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 146 QFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEE 205
+F A AA+ +NG + K + V S + + + ++F+ +L ++T E
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTE 128
Query: 206 HLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL--- 261
+ F+ FGKI+ + +D G S+G+GFV+F N DA A+ M G +G + +
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 262 YAAR---AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCG 318
+A R A K + + +FE+ + K VY I +TD+ ++ FS G
Sbjct: 189 WATRKPPAPKSTQENNTKQLRFEDVVNQS--SPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
I +V + KG+ FV FS+ E A+ A+ + +G + + + D +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 301
Query: 379 LQ-LQYAQ 385
Q + Y+Q
Sbjct: 302 FQQVDYSQ 309
Score = 196 (74.1 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 56/167 (33%), Positives = 84/167 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF-GNIIS---- 128
L G+ +R +W+ R P A KS N + E + N + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 129 --CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F T ESA AI ++NGTT+
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 167 (63.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 59/226 (26%), Positives = 100/226 (44%)
Query: 55 YGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESI 111
Y +V F DA A+ N ++ GK ++++W+ P ++K +N +FV +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEI 125
Query: 112 DNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
++ F FG I +V GKSKG+GFV F + A AI ++ G +G ++I
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 171 YVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENGT 229
+K P+P + N + DV + + + + G IAS L + T
Sbjct: 186 RTNWATRKP----PAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQT 241
Query: 230 --------------SRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+G+ FV F + A A+ ++NG+ I V+
Sbjct: 242 FSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 233 (87.1 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 87/294 (29%), Positives = 137/294 (46%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEE 151
P S +++V N+ + LQE+F + G + S K+ + KS +GFV +
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKD--KSS-YGFVHYFDRR 107
Query: 152 SANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF 211
SA AI +LNG + + I V R + + N+F+ +L +VT+ L + F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQR---EDTSSHFNIFVGDLSPEVTDATLYQSF 164
Query: 212 SKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKA 270
S F + + D+ G SRGFGFV+F N DA+ A+ MNG + S+ + A K A
Sbjct: 165 SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGA 224
Query: 271 ---------EREQI--LRHQFEEKRKERILKYKGSN------VYVKNIDDDVTDEELKAH 313
+ + + L E KE + + N VYV N+ +VT +L +
Sbjct: 225 TSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRY 284
Query: 314 FSQ--CGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAV---NTFHGYMLHRK 362
F G I +V RD KGFGFV +++ EA+ A+ NT Y+ +R+
Sbjct: 285 FHALGAGVIEEVRVQRD-----KGFGFVRYNTHPEAALAIQMGNT-QPYLFNRQ 332
Score = 176 (67.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 47/172 (27%), Positives = 85/172 (49%)
Query: 4 VPP--TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVC-KDSTTGRSTCYGYVNF 60
+PP +T S+YVG++H VT+ L + F+ + S ++ KD ++ YG+V++
Sbjct: 49 LPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHY 103
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARK-SGVANLFVKNLIESIDNVRLQEM 119
A AI N L G+ ++++W+ S N+FV +L + + L +
Sbjct: 104 FDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQS 163
Query: 120 FQNFGNIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
F F + +V + G+S+G GFV F ++ A AI +NG + ++I
Sbjct: 164 FSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
Score = 158 (60.7 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+++VGDL P+VTD L+ +FS F S + RV D TGRS +G+V+F + DA AI
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 73 KNHTQLHGKMLRISWSCR 90
N L + +R +W+ +
Sbjct: 205 MNGKWLSSRQIRCNWATK 222
Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
Identities = 37/133 (27%), Positives = 66/133 (49%)
Query: 233 FGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYK 292
+GFV++ + A A+ ++NG + + + A +RE H F
Sbjct: 98 YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSH-F------------ 144
Query: 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAV 351
N++V ++ +VTD L FS + + A+VM D+K G ++GFGFV F + ++A A+
Sbjct: 145 --NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 202
Query: 352 NTFHGYMLHRKPL 364
N +G L + +
Sbjct: 203 NEMNGKWLSSRQI 215
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 149 (57.5 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 46/152 (30%), Positives = 73/152 (48%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+VG + + + +L F EF + + V KD TG ++ + + A++A +
Sbjct: 9 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKA-QSA 67
Query: 74 NHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
H Q L G I + R LFV L + ++ +FQ FG+I C V
Sbjct: 68 LHEQKTLPGMNRPIQVKPAASEGRGED-RKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 126
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
S DG SKG FV+F ++ A AAI++L+G+
Sbjct: 127 LRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGS 158
Score = 134 (52.2 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
NLF+ +L + + L++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 343 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 402
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 403 MNGFQIGMKRLKVQLKRPKDANR 425
Score = 134 (52.2 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 51/185 (27%), Positives = 85/185 (45%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
+D DA K LFV + +D L+ +F+ FG I V G KG F+ +
Sbjct: 2 KDHDAIK-----LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYC 56
Query: 149 TEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA---AKYTNLFMKNLDSDVTEE 205
+SA A L+ +++ G + + +V P+ + + LF+ L EE
Sbjct: 57 ARDSALKAQSALH-----EQKTLPG--MNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEE 109
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265
+ F FG I + R +GTS+G FV F + +A+ A+++++GS + V AR
Sbjct: 110 DVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMA-VRAGAR 168
Query: 266 AQKKA 270
Q +A
Sbjct: 169 GQGEA 173
Score = 119 (46.9 bits), Expect = 0.00060, P = 0.00060
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 92 PDARKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
P ++ G NLF+ +L + + L + F FG ++S KV +SK GFV F+
Sbjct: 332 PQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFD 391
Query: 149 TEESANAAIENLNGTTVGDKRIYV 172
SA AI+ +NG +G KR+ V
Sbjct: 392 NPTSAQTAIQAMNGFQIGMKRLKV 415
Score = 114 (45.2 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G N+++ ++ + D EL F G + SAKV D +K FGFV F +P A A
Sbjct: 340 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 399
Query: 351 VNTFHGYMLHRKPLYVAIAQRKE 373
+ +G+ + K L V + + K+
Sbjct: 400 IQAMNGFQIGMKRLKVQLKRPKD 422
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 150 (57.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 45/152 (29%), Positives = 72/152 (47%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+VG + + + +L F +F + + V KD TG ++ + + A++A +
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA-QSA 67
Query: 74 NHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
H Q L G I D ++R LFV L + + +++MF+ FG I C V
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGED-RKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
DG SKG FV+F+T A AAI L+ +
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 158
Score = 134 (52.2 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
N+F+ +L + T+ +++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 377 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 436
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 437 MNGFQIGMKRLKVQLKRPKDANR 459
Score = 133 (51.9 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 45/164 (27%), Positives = 73/164 (44%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ + + E+ L F +FG+I L + +D+ G +G F+ + D A +A A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ K L Q+ E + ++R L +V + TDE+++
Sbjct: 69 HEQ----KTLPGMNRPI-----QVKPADSESRGEDRKL-------FVGMLGKQQTDEDVR 112
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
F GTI V+R G +KG FV F + EA A+NT H
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 126 (49.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 47/168 (27%), Positives = 74/168 (44%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
++PDA K LFV + ++ L+ +F+ FG I V + G KG F+ +
Sbjct: 2 KEPDAIK-----LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYC 56
Query: 149 TEESANAAIENLNG--TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
+SA A L+ T G R +K +D K LF+ L T+E
Sbjct: 57 ARDSALKAQSALHEQKTLPGMNRPIQ---VKPADSESRGEDRK---LFVGMLGKQQTDED 110
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
+ + F FG I + R +GTS+G FV F +A+ A+ ++ S
Sbjct: 111 VRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 158
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
N+F+ +L + + + +MF FG++IS KV +SK GFV F+ SA AAI+
Sbjct: 377 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 436
Query: 160 LNGTTVGDKRIYV 172
+NG +G KR+ V
Sbjct: 437 MNGFQIGMKRLKV 449
Score = 120 (47.3 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 27/98 (27%), Positives = 52/98 (53%)
Query: 277 RHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKG 335
+ Q +++++++ G N+++ ++ + TD E+ F G + SAKV D +K
Sbjct: 359 QQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKC 418
Query: 336 FGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373
FGFV F +P A A+ +G+ + K L V + + K+
Sbjct: 419 FGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 456
Score = 51 (23.0 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 379 LQLQYA--QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 421
LQ YA QH + + V P+ +P PP +V+Q PP P
Sbjct: 318 LQQAYAGMQHYTAYPAAYSLVAPA-FPQ-----PPALVAQQPPPP 356
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 150 (57.9 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 45/152 (29%), Positives = 72/152 (47%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+VG + + + +L F +F + + V KD TG ++ + + A++A +
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA-QSA 67
Query: 74 NHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
H Q L G I D ++R LFV L + + +++MF+ FG I C V
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGED-RKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
DG SKG FV+F+T A AAI L+ +
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 158
Score = 134 (52.2 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
N+F+ +L + T+ +++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 441 MNGFQIGMKRLKVQLKRPKDANR 463
Score = 133 (51.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 45/164 (27%), Positives = 73/164 (44%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ + + E+ L F +FG+I L + +D+ G +G F+ + D A +A A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ K L Q+ E + ++R L +V + TDE+++
Sbjct: 69 HEQ----KTLPGMNRPI-----QVKPADSESRGEDRKL-------FVGMLGKQQTDEDVR 112
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
F GTI V+R G +KG FV F + EA A+NT H
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 126 (49.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 47/168 (27%), Positives = 74/168 (44%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
++PDA K LFV + ++ L+ +F+ FG I V + G KG F+ +
Sbjct: 2 KEPDAIK-----LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYC 56
Query: 149 TEESANAAIENLNG--TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
+SA A L+ T G R +K +D K LF+ L T+E
Sbjct: 57 ARDSALKAQSALHEQKTLPGMNRPIQ---VKPADSESRGEDRK---LFVGMLGKQQTDED 110
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
+ + F FG I + R +GTS+G FV F +A+ A+ ++ S
Sbjct: 111 VRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 158
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
N+F+ +L + + + +MF FG++IS KV +SK GFV F+ SA AAI+
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 160 LNGTTVGDKRIYV 172
+NG +G KR+ V
Sbjct: 441 MNGFQIGMKRLKV 453
Score = 122 (48.0 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 28/102 (27%), Positives = 54/102 (52%)
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-G 331
+Q + Q +++++++ G N+++ ++ + TD E+ F G + SAKV D
Sbjct: 359 QQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATN 418
Query: 332 INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373
+K FGFV F +P A A+ +G+ + K L V + + K+
Sbjct: 419 QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 460
Score = 52 (23.4 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 379 LQLQYA--QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 421
LQ YA QH ++ +++ +P PP +V+Q PP P
Sbjct: 318 LQQAYAGMQHYTAAYPAAYSLVAPAFPQ-----PPALVAQQPPPP 357
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 231 (86.4 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 80/308 (25%), Positives = 138/308 (44%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGK----SKGHG-----------FV 145
L+V NL + V + ++F G SCK+ T + D + S G FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 146 QFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEE 205
+F A AA+ +NG + K + V S + + + ++F+ +L ++T E
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTE 128
Query: 206 HLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL--- 261
+ F+ FGKI+ + +D G S+G+GFV+F N DA A+ M G +G + +
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 262 YAAR---AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCG 318
+A R A K + + +FE+ + K VY I +TD+ ++ FS G
Sbjct: 189 WATRKPPAPKSTQETNTKQLRFEDVVNQS--SPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
I +V + KG+ FV FS+ E A+ A+ + +G + + + D +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 301
Query: 379 LQ-LQYAQ 385
Q + Y+Q
Sbjct: 302 FQQVDYSQ 309
Score = 192 (72.6 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 57/168 (33%), Positives = 84/168 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL-IESIDNVRLQEMFQNF-GNIIS--- 128
L G+ +R +W+ R P A KS K L E + N + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 129 ---CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F T ESA AI ++NGTT+
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 166 (63.5 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 60/227 (26%), Positives = 102/227 (44%)
Query: 55 YGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESI 111
Y +V F DA A+ N ++ GK ++++W+ P ++K +N +FV +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEI 125
Query: 112 DNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
++ F FG I +V GKSKG+GFV F + A AI ++ G +G ++I
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 171 YVGRFIKKSDRVLPSP-AAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENG 228
+K P+P + + TN + DV + + + + G IAS L +
Sbjct: 186 RTNWATRKP----PAPKSTQETNTKQLRFE-DVVNQSSPKNCTVYCGGIASGLTDQLMRQ 240
Query: 229 T--------------SRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
T +G+ FV F + A A+ ++NG+ I V+
Sbjct: 241 TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 231 (86.4 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 80/308 (25%), Positives = 138/308 (44%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGK----SKGHG-----------FV 145
L+V NL + V + ++F G SCK+ T + D + S G FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 146 QFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEE 205
+F A AA+ +NG + K + V S + + + ++F+ +L ++T E
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTE 128
Query: 206 HLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL--- 261
+ F+ FGKI+ + +D G S+G+GFV+F N DA A+ M G +G + +
Sbjct: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
Query: 262 YAAR---AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCG 318
+A R A K + + +FE+ + K VY I +TD+ ++ FS G
Sbjct: 189 WATRKPPAPKSTQETNTKQLRFEDVVNQS--SPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
I +V + KG+ FV FS+ E A+ A+ + +G + + + D +
Sbjct: 247 QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 301
Query: 379 LQ-LQYAQ 385
Q + Y+Q
Sbjct: 302 FQQVDYSQ 309
Score = 192 (72.6 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 57/168 (33%), Positives = 84/168 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL-IESIDNVRLQEMFQNF-GNIIS--- 128
L G+ +R +W+ R P A KS K L E + N + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 129 ---CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F T ESA AI ++NGTT+
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 166 (63.5 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 60/227 (26%), Positives = 102/227 (44%)
Query: 55 YGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESI 111
Y +V F DA A+ N ++ GK ++++W+ P ++K +N +FV +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEI 125
Query: 112 DNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
++ F FG I +V GKSKG+GFV F + A AI ++ G +G ++I
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 171 YVGRFIKKSDRVLPSP-AAKYTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENG 228
+K P+P + + TN + DV + + + + G IAS L +
Sbjct: 186 RTNWATRKP----PAPKSTQETNTKQLRFE-DVVNQSSPKNCTVYCGGIASGLTDQLMRQ 240
Query: 229 T--------------SRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
T +G+ FV F + A A+ ++NG+ I V+
Sbjct: 241 TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 153 (58.9 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 46/152 (30%), Positives = 69/152 (45%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+VG + + + +L F +F + + V KD TG ++ + + AI+A +
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKA-QTA 105
Query: 74 NHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
H Q L G I D ++R LFV L + + +FQ FG I C V
Sbjct: 106 LHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTV 165
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
DG SKG FV+F + A AAI L+G+
Sbjct: 166 LRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS 197
Score = 143 (55.4 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 48/167 (28%), Positives = 75/167 (44%)
Query: 92 PDARKS-GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
PD K LFV + +D L+ +F+ FG I V G KG F+ +
Sbjct: 36 PDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCA 95
Query: 150 EESANAAIENLNG--TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHL 207
+SA A L+ T G R +K +D S + LF+ L+ +EE +
Sbjct: 96 RDSAIKAQTALHEQKTLPGMARPIQ---VKPADS--ESRGGRDRKLFVGMLNKQQSEEDV 150
Query: 208 VEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
+ F FG I + R +G+S+G FV F + +A+ A+ A++GS
Sbjct: 151 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS 197
Score = 137 (53.3 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 32/73 (43%), Positives = 43/73 (58%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NLF+ +L + + L +MF FGNIIS KV +SK GFV F+ SA AAI+
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 460
Query: 160 LNGTTVGDKRIYV 172
+NG +G KR+ V
Sbjct: 461 MNGFQIGMKRLKV 473
Score = 131 (51.2 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 30/71 (42%), Positives = 41/71 (57%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
NLF+ +L + + L + F FG I S + D S+ FGFV+FDNP A+ A++A
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 460
Query: 251 MNGSVIGSKVL 261
MNG IG K L
Sbjct: 461 MNGFQIGMKRL 471
Score = 115 (45.5 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G N+++ ++ + D EL F G I S+KV D +K FGFV F +P A A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAA 457
Query: 351 VNTFHGYMLHRKPLYVAIAQRKE 373
+ +G+ + K L V + + K+
Sbjct: 458 IQAMNGFQIGMKRLKVQLKRPKD 480
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 150 (57.9 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 48/162 (29%), Positives = 75/162 (46%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
VP L+VG + + + +L F EF + + V KD TG ++ + +
Sbjct: 38 VPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCAR 97
Query: 64 HDAIRAIEVKNHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
A++A + H Q L G I + R LFV L + ++ +FQ
Sbjct: 98 DSALKA-QSALHEQKTLPGMNRPIQVKPAASEGRGED-RKLFVGMLGKQQGEEDVRRLFQ 155
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
FG+I C V S DG SKG FV+F ++ A AAI++L+G+
Sbjct: 156 PFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGS 197
Score = 134 (52.2 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
NLF+ +L + + L++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 398 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 457
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 458 MNGFQIGMKRLKVQLKRPKDANR 480
Score = 134 (52.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 51/194 (26%), Positives = 88/194 (45%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
+D DA K LFV + +D L+ +F+ FG I V G KG F+ +
Sbjct: 41 KDHDAIK-----LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYC 95
Query: 149 TEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA---AKYTNLFMKNLDSDVTEE 205
+SA A L+ +++ G + + +V P+ + + LF+ L EE
Sbjct: 96 ARDSALKAQSALH-----EQKTLPG--MNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEE 148
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS--VIGSKVLYA 263
+ F FG I + R +GTS+G FV F + +A+ A+++++GS + G+
Sbjct: 149 DVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLV 208
Query: 264 ARAQKKAEREQILR 277
+ +RE+ LR
Sbjct: 209 VKLAD-TDRERALR 221
Score = 119 (46.9 bits), Expect = 0.00073, P = 0.00073
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 92 PDARKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
P ++ G NLF+ +L + + L + F FG ++S KV +SK GFV F+
Sbjct: 387 PQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFD 446
Query: 149 TEESANAAIENLNGTTVGDKRIYV 172
SA AI+ +NG +G KR+ V
Sbjct: 447 NPTSAQTAIQAMNGFQIGMKRLKV 470
Score = 118 (46.6 bits), Expect = 0.00094, P = 0.00094
Identities = 55/221 (24%), Positives = 87/221 (39%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ + + E+ L F +FG+I L + +D G +G F+ + D A +A A
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA- 106
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
L+ + R ++ E R E ++V + +E+++
Sbjct: 107 ---------LHEQKTLPGMNRPIQVKPAASEGRGE------DRKLFVGMLGKQQGEEDVR 151
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR---KPLYVAI 368
F G I V+R G +KG FV F S EA A+ + HG L V +
Sbjct: 152 RLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKL 211
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANV-IPSGYPSLYYT 408
A +R L+ Q MAG G+ +P G Y T
Sbjct: 212 ADTDRERA----LRRMQQMAGQLGAFHPAPLPLGACGAYTT 248
Score = 114 (45.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G N+++ ++ + D EL F G + SAKV D +K FGFV F +P A A
Sbjct: 395 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 454
Query: 351 VNTFHGYMLHRKPLYVAIAQRKE 373
+ +G+ + K L V + + K+
Sbjct: 455 IQAMNGFQIGMKRLKVQLKRPKD 477
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 150 (57.9 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 48/162 (29%), Positives = 75/162 (46%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
VP L+VG + + + +L F EF + + V KD TG ++ + +
Sbjct: 38 VPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCAR 97
Query: 64 HDAIRAIEVKNHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
A++A + H Q L G I + R LFV L + ++ +FQ
Sbjct: 98 DSALKA-QSALHEQKTLPGMNRPIQVKPAASEGRGED-RKLFVGMLGKQQGEEDVRRLFQ 155
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
FG+I C V S DG SKG FV+F ++ A AAI++L+G+
Sbjct: 156 PFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGS 197
Score = 134 (52.2 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
NLF+ +L + + L++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 398 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 457
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 458 MNGFQIGMKRLKVQLKRPKDANR 480
Score = 134 (52.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 51/194 (26%), Positives = 88/194 (45%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
+D DA K LFV + +D L+ +F+ FG I V G KG F+ +
Sbjct: 41 KDHDAIK-----LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYC 95
Query: 149 TEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA---AKYTNLFMKNLDSDVTEE 205
+SA A L+ +++ G + + +V P+ + + LF+ L EE
Sbjct: 96 ARDSALKAQSALH-----EQKTLPG--MNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEE 148
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS--VIGSKVLYA 263
+ F FG I + R +GTS+G FV F + +A+ A+++++GS + G+
Sbjct: 149 DVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLV 208
Query: 264 ARAQKKAEREQILR 277
+ +RE+ LR
Sbjct: 209 VKLAD-TDRERALR 221
Score = 119 (46.9 bits), Expect = 0.00073, P = 0.00073
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 92 PDARKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
P ++ G NLF+ +L + + L + F FG ++S KV +SK GFV F+
Sbjct: 387 PQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFD 446
Query: 149 TEESANAAIENLNGTTVGDKRIYV 172
SA AI+ +NG +G KR+ V
Sbjct: 447 NPTSAQTAIQAMNGFQIGMKRLKV 470
Score = 118 (46.6 bits), Expect = 0.00094, P = 0.00094
Identities = 55/221 (24%), Positives = 87/221 (39%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ + + E+ L F +FG+I L + +D G +G F+ + D A +A A
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA- 106
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
L+ + R ++ E R E ++V + +E+++
Sbjct: 107 ---------LHEQKTLPGMNRPIQVKPAASEGRGE------DRKLFVGMLGKQQGEEDVR 151
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR---KPLYVAI 368
F G I V+R G +KG FV F S EA A+ + HG L V +
Sbjct: 152 RLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKL 211
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANV-IPSGYPSLYYT 408
A +R L+ Q MAG G+ +P G Y T
Sbjct: 212 ADTDRERA----LRRMQQMAGQLGAFHPAPLPLGACGAYTT 248
Score = 114 (45.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G N+++ ++ + D EL F G + SAKV D +K FGFV F +P A A
Sbjct: 395 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 454
Query: 351 VNTFHGYMLHRKPLYVAIAQRKE 373
+ +G+ + K L V + + K+
Sbjct: 455 IQAMNGFQIGMKRLKVQLKRPKD 477
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 150 (57.9 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 45/152 (29%), Positives = 72/152 (47%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+VG + + + +L F +F + + V KD TG ++ + + A++A +
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA-QSA 67
Query: 74 NHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
H Q L G I D ++R LFV L + + +++MF+ FG I C V
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRGED-RKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
DG SKG FV+F+T A AAI L+ +
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 158
Score = 134 (52.2 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
N+F+ +L + T+ +++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 410 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 469
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 470 MNGFQIGMKRLKVQLKRPKDANR 492
Score = 133 (51.9 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 45/164 (27%), Positives = 73/164 (44%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ + + E+ L F +FG+I L + +D+ G +G F+ + D A +A A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ K L Q+ E + ++R L +V + TDE+++
Sbjct: 69 HEQ----KTLPGMNRPI-----QVKPADSESRGEDRKL-------FVGMLGKQQTDEDVR 112
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
F GTI V+R G +KG FV F + EA A+NT H
Sbjct: 113 KMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 128 (50.1 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 28/103 (27%), Positives = 56/103 (54%)
Query: 272 REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK- 330
++Q + Q +++++++ + G N+++ ++ + TD E+ F G + SAKV D
Sbjct: 387 QQQQQQQQQQQQQQQQQQRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRAT 446
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373
+K FGFV F +P A A+ +G+ + K L V + + K+
Sbjct: 447 NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 489
Score = 127 (49.8 bits), Expect = 0.00010, P = 0.00010
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 95 RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESA 153
R G N+F+ +L + + + +MF FG++IS KV +SK GFV F+ SA
Sbjct: 405 RPDG-CNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 463
Query: 154 NAAIENLNGTTVGDKRIYV 172
AAI+ +NG +G KR+ V
Sbjct: 464 QAAIQAMNGFQIGMKRLKV 482
Score = 126 (49.4 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 47/168 (27%), Positives = 74/168 (44%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
++PDA K LFV + ++ L+ +F+ FG I V + G KG F+ +
Sbjct: 2 KEPDAIK-----LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYC 56
Query: 149 TEESANAAIENLNG--TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
+SA A L+ T G R +K +D K LF+ L T+E
Sbjct: 57 ARDSALKAQSALHEQKTLPGMNRPIQ---VKPADSESRGEDRK---LFVGMLGKQQTDED 110
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
+ + F FG I + R +GTS+G FV F +A+ A+ ++ S
Sbjct: 111 VRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 158
Score = 52 (23.4 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 379 LQLQYA--QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 421
LQ YA QH ++ +++ +P PP +V+Q PP P
Sbjct: 346 LQQAYAGMQHYTAAYPAAYSLVAPAFPQ-----PPALVAQQPPPP 385
Score = 40 (19.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPD 566
+P L P P+QQ+Q ++ ++ +PD
Sbjct: 373 QPPALVAQQPPPPPQQQQQQQQQQQQQQQQQQRPD 407
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 149 (57.5 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 48/162 (29%), Positives = 74/162 (45%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
VP L+VG + + + +L F EF + + V KD TG ++ + +
Sbjct: 38 VPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCAR 97
Query: 64 HDAIRAIEVKNHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
A++A + H Q L G I + R LFV L + ++ +FQ
Sbjct: 98 DSALKA-QSALHEQKTLPGMNRPIQVKPAASEGRGED-RKLFVGMLGKQQGEEDVRRLFQ 155
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
FG+I C V S DG SKG FV+F ++ A AAI+ L+G+
Sbjct: 156 PFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGS 197
Score = 134 (52.2 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
NLF+ +L + + L++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 376 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 435
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 436 MNGFQIGMKRLKVQLKRPKDANR 458
Score = 133 (51.9 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 51/194 (26%), Positives = 87/194 (44%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
+D DA K LFV + +D L+ +F+ FG I V G KG F+ +
Sbjct: 41 KDHDAIK-----LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYC 95
Query: 149 TEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA---AKYTNLFMKNLDSDVTEE 205
+SA A L+ +++ G + + +V P+ + + LF+ L EE
Sbjct: 96 ARDSALKAQSALH-----EQKTLPG--MNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEE 148
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS--VIGSKVLYA 263
+ F FG I + R +GTS+G FV F + +A+ A++ ++GS + G+
Sbjct: 149 DVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLV 208
Query: 264 ARAQKKAEREQILR 277
+ +RE+ LR
Sbjct: 209 VKLAD-TDRERALR 221
Score = 119 (46.9 bits), Expect = 0.00068, P = 0.00068
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 92 PDARKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
P ++ G NLF+ +L + + L + F FG ++S KV +SK GFV F+
Sbjct: 365 PQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFD 424
Query: 149 TEESANAAIENLNGTTVGDKRIYV 172
SA AI+ +NG +G KR+ V
Sbjct: 425 NPTSAQTAIQAMNGFQIGMKRLKV 448
Score = 114 (45.2 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G N+++ ++ + D EL F G + SAKV D +K FGFV F +P A A
Sbjct: 373 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 432
Query: 351 VNTFHGYMLHRKPLYVAIAQRKE 373
+ +G+ + K L V + + K+
Sbjct: 433 IQAMNGFQIGMKRLKVQLKRPKD 455
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 149 (57.5 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 48/162 (29%), Positives = 74/162 (45%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
VP L+VG + + + +L F EF + + V KD TG ++ + +
Sbjct: 38 VPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCAR 97
Query: 64 HDAIRAIEVKNHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
A++A + H Q L G I + R LFV L + ++ +FQ
Sbjct: 98 DSALKA-QSALHEQKTLPGMNRPIQVKPAASEGRGED-RKLFVGMLGKQQGEEDVRRLFQ 155
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
FG+I C V S DG SKG FV+F ++ A AAI+ L+G+
Sbjct: 156 PFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGS 197
Score = 134 (52.2 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
NLF+ +L + + L++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 376 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 435
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 436 MNGFQIGMKRLKVQLKRPKDANR 458
Score = 133 (51.9 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 51/194 (26%), Positives = 87/194 (44%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
+D DA K LFV + +D L+ +F+ FG I V G KG F+ +
Sbjct: 41 KDHDAIK-----LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYC 95
Query: 149 TEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA---AKYTNLFMKNLDSDVTEE 205
+SA A L+ +++ G + + +V P+ + + LF+ L EE
Sbjct: 96 ARDSALKAQSALH-----EQKTLPG--MNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEE 148
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS--VIGSKVLYA 263
+ F FG I + R +GTS+G FV F + +A+ A++ ++GS + G+
Sbjct: 149 DVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLV 208
Query: 264 ARAQKKAEREQILR 277
+ +RE+ LR
Sbjct: 209 VKLAD-TDRERALR 221
Score = 119 (46.9 bits), Expect = 0.00068, P = 0.00068
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 92 PDARKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
P ++ G NLF+ +L + + L + F FG ++S KV +SK GFV F+
Sbjct: 365 PQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFD 424
Query: 149 TEESANAAIENLNGTTVGDKRIYV 172
SA AI+ +NG +G KR+ V
Sbjct: 425 NPTSAQTAIQAMNGFQIGMKRLKV 448
Score = 114 (45.2 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G N+++ ++ + D EL F G + SAKV D +K FGFV F +P A A
Sbjct: 373 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 432
Query: 351 VNTFHGYMLHRKPLYVAIAQRKE 373
+ +G+ + K L V + + K+
Sbjct: 433 IQAMNGFQIGMKRLKVQLKRPKD 455
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 229 (85.7 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 71/269 (26%), Positives = 128/269 (47%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + + ++F G +CK+ G + FV+F A AA+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 162 GTTVGDKRIYVGRFI-----KK---SDRVLPSPAAK-YTNLFMKNLDSDVTEEHLVEKFS 212
G + K + V KK S V+ + ++ + ++F+ +L ++T E + F+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 213 KFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK-- 269
FG+I+ + +D G S+G+GFV+F N DA A++ M G +G + + A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 270 AEREQILRHQFEEKRKERILKYKGSN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMR 327
A + + + E + + SN VY + +T++ ++ FS G I +V
Sbjct: 188 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 328 DEKGINKGFGFVCFSSPEEASKAVNTFHG 356
D KG+ FV F+S E A+ A+ + +G
Sbjct: 248 D-----KGYSFVRFNSHESAAHAIVSVNG 271
Score = 192 (72.6 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 58/170 (34%), Positives = 86/170 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF----GNIIS- 128
L G+ +R +W+ R P A KS + K L S D V Q N G + S
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESN-TKQL--SYDEVVNQSSPSNCTVYCGGVTSG 224
Query: 129 -----CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F + ESA AI ++NGTT+
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 175 (66.7 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 58/209 (27%), Positives = 94/209 (44%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ + ++ D T G Y +V F A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDP-YCFVEFHEHRHAAAAL 63
Query: 71 EVKNHTQLHGKMLRISW----SCRDPDARKSGVAN---------LFVKNLIESIDNVRLQ 117
N ++ GK ++++W S + D S V + +FV +L I ++
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIK 123
Query: 118 EMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
F FG I +V GKSKG+GFV F + A AI+ + G +G ++I
Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 177 KKSDRVLPSPAAKY-TNLFMKNLDSDVTE 204
+K P+P + Y +N + D V +
Sbjct: 184 RKP----PAPKSTYESNTKQLSYDEVVNQ 208
Score = 174 (66.3 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 50/182 (27%), Positives = 89/182 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NL DVTE +++ FS+ G + + D G + FV F A AL AMN
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 253 G-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G ++G +V ++++ ++ + +V+V ++ ++T E++K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQ----DHFHVFVGDLSPEITTEDIK 123
Query: 312 AHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
A F+ G I+ A+V++D G +KG+GFV F + +A A+ G L + + A
Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 371 RK 372
RK
Sbjct: 184 RK 185
Score = 146 (56.5 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 46/178 (25%), Positives = 82/178 (46%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIEN 159
++FV +L I ++ F FG I +V GKSKG+GFV F + A AI+
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 160 LNGTTVGDKRIYVGRFIKKS----------------DRVLPSPAAKYTNLFMKNLDSDVT 203
+ G +G ++I +K D V+ + ++ + S +T
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
E+ + + FS FG+I + + D +G+ FV F++ + A A+ ++NG+ I V+
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVV 279
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 229 (85.7 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 71/269 (26%), Positives = 128/269 (47%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + + ++F G +CK+ G + FV+F A AA+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 162 GTTVGDKRIYVGRFI-----KK---SDRVLPSPAAK-YTNLFMKNLDSDVTEEHLVEKFS 212
G + K + V KK S V+ + ++ + ++F+ +L ++T E + F+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 213 KFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK-- 269
FG+I+ + +D G S+G+GFV+F N DA A++ M G +G + + A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 270 AEREQILRHQFEEKRKERILKYKGSN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMR 327
A + + + E + + SN VY + +T++ ++ FS G I +V
Sbjct: 188 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 328 DEKGINKGFGFVCFSSPEEASKAVNTFHG 356
D KG+ FV F+S E A+ A+ + +G
Sbjct: 248 D-----KGYSFVRFNSHESAAHAIVSVNG 271
Score = 192 (72.6 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 58/170 (34%), Positives = 86/170 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF----GNIIS- 128
L G+ +R +W+ R P A KS + K L S D V Q N G + S
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESN-TKQL--SYDEVVNQSSPSNCTVYCGGVTSG 224
Query: 129 -----CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F + ESA AI ++NGTT+
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 175 (66.7 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 58/209 (27%), Positives = 94/209 (44%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ + ++ D T G Y +V F A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDP-YCFVEFHEHRHAAAAL 63
Query: 71 EVKNHTQLHGKMLRISW----SCRDPDARKSGVAN---------LFVKNLIESIDNVRLQ 117
N ++ GK ++++W S + D S V + +FV +L I ++
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIK 123
Query: 118 EMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
F FG I +V GKSKG+GFV F + A AI+ + G +G ++I
Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 177 KKSDRVLPSPAAKY-TNLFMKNLDSDVTE 204
+K P+P + Y +N + D V +
Sbjct: 184 RKP----PAPKSTYESNTKQLSYDEVVNQ 208
Score = 174 (66.3 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 50/182 (27%), Positives = 89/182 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NL DVTE +++ FS+ G + + D G + FV F A AL AMN
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 253 G-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G ++G +V ++++ ++ + +V+V ++ ++T E++K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQ----DHFHVFVGDLSPEITTEDIK 123
Query: 312 AHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
A F+ G I+ A+V++D G +KG+GFV F + +A A+ G L + + A
Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 371 RK 372
RK
Sbjct: 184 RK 185
Score = 146 (56.5 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 46/178 (25%), Positives = 82/178 (46%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIEN 159
++FV +L I ++ F FG I +V GKSKG+GFV F + A AI+
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 160 LNGTTVGDKRIYVGRFIKKS----------------DRVLPSPAAKYTNLFMKNLDSDVT 203
+ G +G ++I +K D V+ + ++ + S +T
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
E+ + + FS FG+I + + D +G+ FV F++ + A A+ ++NG+ I V+
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVV 279
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 211 (79.3 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 60/243 (24%), Positives = 111/243 (45%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + + ++F G +CK+ G + FV+F A AA+ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G + K + V S + + + ++F+ +L ++T E + F+ FG+I+
Sbjct: 64 GRKIMGKEVKVNWATTPSSQ--KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 121
Query: 222 IARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK--AEREQILRH 278
+ +D G S+G+GFV+F N DA A++ M G +G + + A +K A + +
Sbjct: 122 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 181
Query: 279 QFEEKRKERILKYKGSN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF 336
+ E + + N VY + +T++ ++ FS G I +V D KG+
Sbjct: 182 TKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGY 236
Query: 337 GFV 339
F+
Sbjct: 237 SFI 239
Score = 199 (75.1 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 57/199 (28%), Positives = 96/199 (48%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ + ++ D T G Y +V F A A+
Sbjct: 2 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDP-YCFVEFHEHRHAAAAL 59
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVAN---LFVKNLIESIDNVRLQEMFQNFGNII 127
N ++ GK ++++W+ P ++K +N +FV +L I ++ F FG I
Sbjct: 60 AAMNGRKIMGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 118
Query: 128 SCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
+V GKSKG+GFV F + A AI+ + G +G ++I +K P+P
Sbjct: 119 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP----PAP 174
Query: 187 AAKY-TNLFMKNLDSDVTE 204
+ Y +N + D V++
Sbjct: 175 KSTYESNTKQLSYDEVVSQ 193
Score = 167 (63.8 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 52/182 (28%), Positives = 88/182 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NL DVTE +++ FS+ G + + D G + FV F A AL AMN
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 253 G-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G ++G +V ++++ H F +V+V ++ ++T E++K
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSNH-F--------------HVFVGDLSPEITTEDIK 108
Query: 312 AHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
A F+ G I+ A+V++D G +KG+GFV F + +A A+ G L + + A
Sbjct: 109 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 168
Query: 371 RK 372
RK
Sbjct: 169 RK 170
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 228 (85.3 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 70/269 (26%), Positives = 127/269 (47%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + + ++F G +CK+ G + FV+F A AA+ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 162 GTTVGDKRIYVGRFI-----KK---SDRVLPSPAAK-YTNLFMKNLDSDVTEEHLVEKFS 212
G + K + V KK S V+ + ++ + ++F+ +L ++T E + F+
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 123
Query: 213 KFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK-- 269
FG+I+ + +D G S+G+GFV+F N DA A++ M G +G + + A +K
Sbjct: 124 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 183
Query: 270 AEREQILRHQFEEKRKERILKYKGSN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMR 327
A + + + E + + N VY + +T++ ++ FS G I +V
Sbjct: 184 APKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 243
Query: 328 DEKGINKGFGFVCFSSPEEASKAVNTFHG 356
D KG+ F+ FSS E A+ A+ + +G
Sbjct: 244 D-----KGYSFIRFSSHESAAHAIVSVNG 267
Score = 190 (71.9 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 57/170 (33%), Positives = 86/170 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI+
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF----GNIIS- 128
L G+ +R +W+ R P A KS + K L S D V Q N G + S
Sbjct: 164 GGQWLGGRQIRTNWATRKPPAPKSTYESN-TKQL--SYDEVVSQSSPGNCTVYCGGVTSG 220
Query: 129 -----CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ F++F + ESA AI ++NGTT+
Sbjct: 221 LTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAIVSVNGTTI 270
Score = 176 (67.0 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 58/209 (27%), Positives = 95/209 (45%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ + ++ D T G Y +V F A A+
Sbjct: 2 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDP-YCFVEFHEHRHAAAAL 59
Query: 71 EVKNHTQLHGKMLRISW----SCRDPDARKSGVAN---------LFVKNLIESIDNVRLQ 117
N ++ GK ++++W S + D S V + +FV +L I ++
Sbjct: 60 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIK 119
Query: 118 EMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
F FG I +V GKSKG+GFV F + A AI+ + G +G ++I
Sbjct: 120 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 179
Query: 177 KKSDRVLPSPAAKY-TNLFMKNLDSDVTE 204
+K P+P + Y +N + D V++
Sbjct: 180 RKP----PAPKSTYESNTKQLSYDEVVSQ 204
Score = 174 (66.3 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 50/182 (27%), Positives = 89/182 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NL DVTE +++ FS+ G + + D G + FV F A AL AMN
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 253 G-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G ++G +V ++++ ++ + +V+V ++ ++T E++K
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQ----DHFHVFVGDLSPEITTEDIK 119
Query: 312 AHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
A F+ G I+ A+V++D G +KG+GFV F + +A A+ G L + + A
Sbjct: 120 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 179
Query: 371 RK 372
RK
Sbjct: 180 RK 181
Score = 143 (55.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 45/178 (25%), Positives = 81/178 (45%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIEN 159
++FV +L I ++ F FG I +V GKSKG+GFV F + A AI+
Sbjct: 103 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 162
Query: 160 LNGTTVGDKRIYVGRFIKKS----------------DRVLPSPAAKYTNLFMKNLDSDVT 203
+ G +G ++I +K D V+ + ++ + S +T
Sbjct: 163 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLT 222
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
E+ + + FS FG+I + + D +G+ F+ F + + A A+ ++NG+ I V+
Sbjct: 223 EQLMRQTFSPFGQIMEIRVFPD-----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVV 275
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 230 (86.0 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 73/288 (25%), Positives = 142/288 (49%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGN--IISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158
++V +L +D L F + I+S KV ++ +G S+G+GFV+FE+ + A+ ++
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 159 NLNGTTVGDK----RIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS-K 213
NG + + R+ F ++ L + + +F+ +L DV++ L E FS K
Sbjct: 165 EFNGAPMPNTDQPFRLNWASF-STGEKRLENNGPDLS-IFVGDLAPDVSDALLHETFSEK 222
Query: 214 FGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
+ + + + D N G S+G+GFV F + ++ +A+ MNG S+ + A + +
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR--K 280
Query: 273 EQILRHQFEEKRKERILKYKG----SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD 328
+ Q + +G + ++V +D VTDE+LK FS+ G I S K+
Sbjct: 281 TNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP-- 338
Query: 329 EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQ 376
+ KG GFV F + A +A+ +G ++ ++ + ++ + ++Q
Sbjct: 339 ---VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 383
Score = 200 (75.5 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 56/189 (29%), Positives = 94/189 (49%)
Query: 101 NLFVKNLIESIDNVRLQEMF-QNFGNIISCKVATSED-GKSKGHGFVQFETEESANAAIE 158
++FV +L + + L E F + + ++ + KV + G+SKG+GFV+F E A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 159 NLNGTTVGDKRIYVGRFIKKSDR-------VLPSPAAKY-------TNLFMKNLDSDVTE 204
+NG + + +G + +PS A T +F+ LDS VT+
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
E L + FS+FG+I S+ I +G GFV F N +A ALE +NG+VIG + + +
Sbjct: 320 EDLKQPFSEFGEIVSVKIP-----VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLS 374
Query: 265 RAQKKAERE 273
+ A ++
Sbjct: 375 WGRNPANKQ 383
Score = 166 (63.5 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 51/172 (29%), Positives = 85/172 (49%)
Query: 13 SLYVGDLHPDVTDGELFDAFSE-FKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
S++VGDL PDV+D L + FSE + S+ + +V D+ TGRS YG+V F ++ +A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 72 VKNHTQLHGKMLRISWSC-RDPDA--RKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNI 126
N + + +RI + R + ++ G + F ++ ++I+ +
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 127 ISCKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
K SE G+ KG GFVQF +A A+E LNGT +G + +
Sbjct: 320 EDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTV 371
Score = 156 (60.0 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 46/172 (26%), Positives = 87/172 (50%)
Query: 13 SLYVGDLHPDVTDGELFDAFS--EFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD-AIRA 69
+++VGDL + + L AF+ E + + S++V ++ G S YG+V F S HD A +
Sbjct: 104 TIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFES-HDVADKV 162
Query: 70 IEVKNHTQLHG--KMLRISW---SCRDPDARKSGV-ANLFVKNLIESIDNVRLQEMF-QN 122
++ N + + R++W S + +G ++FV +L + + L E F +
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 123 FGNIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG 173
+ ++ + KV + G+SKG+GFV+F E A+ +NG + + +G
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIG 274
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 147 (56.8 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 48/162 (29%), Positives = 73/162 (45%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
VP L+VG + + + +L F EF + + V KD TG ++ + +
Sbjct: 38 VPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCAR 97
Query: 64 HDAIRAIEVKNHTQ--LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
A++A + H Q L G I + R LFV L + ++ +FQ
Sbjct: 98 DSALKA-QSALHEQKTLPGMNRPIQVKPAASEGRGED-RKLFVGMLGKQQGEEDVRRLFQ 155
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
FG+I C V S DG SKG FV+F ++ A AAI L+G+
Sbjct: 156 PFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGS 197
Score = 134 (52.2 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
NLF+ +L + + L++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 397 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 456
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 457 MNGFQIGMKRLKVQLKRPKDANR 479
Score = 131 (51.2 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 51/194 (26%), Positives = 86/194 (44%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
+D DA K LFV + +D L+ +F+ FG I V G KG F+ +
Sbjct: 41 KDHDAIK-----LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYC 95
Query: 149 TEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA---AKYTNLFMKNLDSDVTEE 205
+SA A L+ +++ G + + +V P+ + + LF+ L EE
Sbjct: 96 ARDSALKAQSALH-----EQKTLPG--MNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEE 148
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS--VIGSKVLYA 263
+ F FG I + R +GTS+G FV F + +A+ A+ ++GS + G+
Sbjct: 149 DVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLV 208
Query: 264 ARAQKKAEREQILR 277
+ +RE+ LR
Sbjct: 209 VKLAD-TDRERALR 221
Score = 119 (46.9 bits), Expect = 0.00072, P = 0.00072
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 92 PDARKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
P ++ G NLF+ +L + + L + F FG ++S KV +SK GFV F+
Sbjct: 386 PQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFD 445
Query: 149 TEESANAAIENLNGTTVGDKRIYV 172
SA AI+ +NG +G KR+ V
Sbjct: 446 NPTSAQTAIQAMNGFQIGMKRLKV 469
Score = 118 (46.6 bits), Expect = 0.00093, P = 0.00093
Identities = 52/220 (23%), Positives = 83/220 (37%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ + + E+ L F +FG+I L + +D G +G F+ + D A +A A
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA- 106
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
L+ + R ++ E R E ++V + +E+++
Sbjct: 107 ---------LHEQKTLPGMNRPIQVKPAASEGRGE------DRKLFVGMLGKQQGEEDVR 151
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR---KPLYVAI 368
F G I V+R G +KG FV F S EA A+ HG L V +
Sbjct: 152 RLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKL 211
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYT 408
A +R Q A H+ + +P G Y T
Sbjct: 212 ADTDRERALRRMQQMAGHLGAFHPAP---LPLGACGAYTT 248
Score = 114 (45.2 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G N+++ ++ + D EL F G + SAKV D +K FGFV F +P A A
Sbjct: 394 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 453
Query: 351 VNTFHGYMLHRKPLYVAIAQRKE 373
+ +G+ + K L V + + K+
Sbjct: 454 IQAMNGFQIGMKRLKVQLKRPKD 476
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 210 (79.0 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 59/195 (30%), Positives = 94/195 (48%)
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFG--KIASLLIARDENGTSRGFGFVNFD 239
VL PAA T L+ NL +V L + F ++ +L RD G SRGF FV
Sbjct: 76 VLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRD-TGQSRGFAFVTMS 134
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
N +D ++ ++G+ + L A K ++ L + E K ++V
Sbjct: 135 NVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHK------------LFVG 182
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYM 358
N+ VT E L F +CG + A+V+ D + G ++G+GFVC+SS E A+ + G+
Sbjct: 183 NLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFE 242
Query: 359 LHRKPLYVAIAQRKE 373
L + + V +AQ K+
Sbjct: 243 LEGRAIRVNLAQGKK 257
Score = 192 (72.6 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 57/187 (30%), Positives = 91/187 (48%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED-GKSKGHGFVQFET 149
DP A + L+ NL ++D+ L ++ Q+F N +V + D G+S+G FV
Sbjct: 78 DPPAAVN--TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSN 135
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKS--DRVLPSPAAKYTN----LFMKNLDSDVT 203
E N I+NL+GT Y+GR +K + D+ P+ Y LF+ NL VT
Sbjct: 136 VEDCNIIIDNLDGTE------YLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVT 189
Query: 204 EEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY 262
E L F + G + + D + G SRG+GFV + + + ALE+++G + + +
Sbjct: 190 SESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIR 249
Query: 263 AARAQKK 269
AQ K
Sbjct: 250 VNLAQGK 256
Score = 160 (61.4 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 46/177 (25%), Positives = 86/177 (48%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
AV+ P A LY G+L +V L +F + V V + TG+S + +V
Sbjct: 75 AVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMS 134
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVA-----NLFVKNLIESIDNVRL 116
+ D I+ + T+ G+ L+++++ + P K + LFV NL ++ + L
Sbjct: 135 NVEDCNIIIDNLDGTEYLGRALKVNFADK-PKPNKEPLYPETEHKLFVGNLSWTVTSESL 193
Query: 117 QEMFQNFGNIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV 172
F+ G+++ +V D G+S+G+GFV + ++ A+E+L+G + + I V
Sbjct: 194 AGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 227 (85.0 bits), Expect = 4.0e-16, P = 4.0e-16
Identities = 71/269 (26%), Positives = 128/269 (47%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + + ++F G +CK+ G + FV+F A AA+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 162 GTTVGDKRIYVGRFI-----KK---SDRVLPSPAAK-YTNLFMKNLDSDVTEEHLVEKFS 212
G + K + V KK S V+ + ++ + ++F+ +L ++T E + F+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 213 KFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK-- 269
FG+I+ + +D G S+G+GFV+F N DA A++ M G +G + + A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 270 AEREQILRHQFEEKRKERILKYKGSN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMR 327
A + + + E + + SN VY + +T++ ++ FS G I +V
Sbjct: 188 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 328 DEKGINKGFGFVCFSSPEEASKAVNTFHG 356
D KG+ FV F+S E A+ A+ + +G
Sbjct: 248 D-----KGYSFVRFNSHESAAHAIVSVNG 271
Score = 192 (72.6 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 58/170 (34%), Positives = 86/170 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF----GNIIS- 128
L G+ +R +W+ R P A KS + K L S D V Q N G + S
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESN-TKQL--SYDEVVNQSSPSNCTVYCGGVTSG 224
Query: 129 -----CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F + ESA AI ++NGTT+
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 177 (67.4 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 58/209 (27%), Positives = 94/209 (44%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ + ++ D T G Y +V F A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDP-YCFVEFYEHRHAAAAL 63
Query: 71 EVKNHTQLHGKMLRISW----SCRDPDARKSGVAN---------LFVKNLIESIDNVRLQ 117
N ++ GK ++++W S + D S V + +FV +L I ++
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIK 123
Query: 118 EMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
F FG I +V GKSKG+GFV F + A AI+ + G +G ++I
Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 177 KKSDRVLPSPAAKY-TNLFMKNLDSDVTE 204
+K P+P + Y +N + D V +
Sbjct: 184 RKP----PAPKSTYESNTKQLSYDEVVNQ 208
Score = 172 (65.6 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 50/182 (27%), Positives = 89/182 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NL DVTE +++ FS+ G + + D G + FV F A AL AMN
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 253 G-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G ++G +V ++++ ++ + +V+V ++ ++T E++K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQ----DHFHVFVGDLSPEITTEDIK 123
Query: 312 AHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
A F+ G I+ A+V++D G +KG+GFV F + +A A+ G L + + A
Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 371 RK 372
RK
Sbjct: 184 RK 185
Score = 146 (56.5 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 46/178 (25%), Positives = 82/178 (46%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIEN 159
++FV +L I ++ F FG I +V GKSKG+GFV F + A AI+
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 160 LNGTTVGDKRIYVGRFIKKS----------------DRVLPSPAAKYTNLFMKNLDSDVT 203
+ G +G ++I +K D V+ + ++ + S +T
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
E+ + + FS FG+I + + D +G+ FV F++ + A A+ ++NG+ I V+
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVV 279
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 145 (56.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 40/152 (26%), Positives = 75/152 (49%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++G + ++ + +L F ++ + + V KD TG ++ + + AI+A
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSAL 68
Query: 74 NHTQLHGKMLR-ISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
+++ + M R I D + R LFV L + + ++++F+ FG I C V
Sbjct: 69 HYSSGYSGMNRPIQVKPADSEGRGED-RKLFVGMLGKQQSDEDVRKIFEPFGGIDECTVL 127
Query: 133 TSEDGKSK-GHGFVQFETEESANAAIENLNGT 163
DG SK G FV+F++ A +AI +L+G+
Sbjct: 128 RGPDGTSKAGCAFVKFQSHSEAQSAINSLHGS 159
Score = 134 (52.2 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
N+F+ +L + T+ +++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 358 NVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQA 417
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 418 MNGFQIGMKRLKVQLKRPKDANR 440
Score = 128 (50.1 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 76 TQLHGKMLRISWSC-RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS 134
T + + L+ C R+ + G N+F+ +L + + + +MF FGN+IS KV
Sbjct: 333 TLISQQQLQSFSQCVREANTGPEG-CNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVD 391
Query: 135 E-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV 172
+SK GFV F+ SA AI+ +NG +G KR+ V
Sbjct: 392 RATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKV 430
Score = 123 (48.4 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G NV++ ++ + TD E+ F G + SAKV D +K FGFV F +P A A
Sbjct: 355 EGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTA 414
Query: 351 VNTFHGYMLHRKPLYVAIAQRKE 373
+ +G+ + K L V + + K+
Sbjct: 415 IQAMNGFQIGMKRLKVQLKRPKD 437
Score = 123 (48.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 45/170 (26%), Positives = 83/170 (48%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
++PDA K LF+ + +++ L+ +F+ +G I V + G KG F+ +
Sbjct: 2 KEPDAIK-----LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYC 56
Query: 149 TEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA---AKYTNLFMKNLDSDVTEE 205
ESA A L+ ++ G Y G + + +V P+ + + LF+ L ++E
Sbjct: 57 ARESAIKAQSALHYSS-G----YSG--MNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDE 109
Query: 206 HLVEKFSKFGKIASLLIARDENGTSR-GFGFVNFDNPDDARRALEAMNGS 254
+ + F FG I + R +GTS+ G FV F + +A+ A+ +++GS
Sbjct: 110 DVRKIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGS 159
Score = 119 (46.9 bits), Expect = 0.00064, P = 0.00064
Identities = 46/166 (27%), Positives = 76/166 (45%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ + ++ E+ L F ++GKI L + +D+ G +G F+ + + A +A A+
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSAL 68
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ S G + K A+ E R E RK ++V + +DE+++
Sbjct: 69 HYSS-GYSGMNRPIQVKPADSEG--RG---EDRK----------LFVGMLGKQQSDEDVR 112
Query: 312 AHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASKAVNTFHG 356
F G I V+R G +K G FV F S EA A+N+ HG
Sbjct: 113 KIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHG 158
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 227 (85.0 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 71/269 (26%), Positives = 128/269 (47%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL + + ++F G +CK+ G + FV+F A AA+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 162 GTTVGDKRIYVGRFI-----KK---SDRVLPSPAAK-YTNLFMKNLDSDVTEEHLVEKFS 212
G + K + V KK S V+ + ++ + ++F+ +L ++T E + F+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 213 KFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK-- 269
FG+I+ + +D G S+G+GFV+F N DA A++ M G +G + + A +K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 270 AEREQILRHQFEEKRKERILKYKGSN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMR 327
A + + + E + + SN VY + +T++ ++ FS G I +V
Sbjct: 188 APKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 328 DEKGINKGFGFVCFSSPEEASKAVNTFHG 356
D KG+ FV F+S E A+ A+ + +G
Sbjct: 248 D-----KGYSFVRFNSHESAAHAIVSVNG 271
Score = 192 (72.6 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 58/170 (34%), Positives = 86/170 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL P++T ++ AF+ F ++ RV KD TG+S YG+V+F + DA AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF----GNIIS- 128
L G+ +R +W+ R P A KS + K L S D V Q N G + S
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESN-TKQL--SYDEVVNQSSPSNCTVYCGGVTSG 224
Query: 129 -----CKVATSEDGK--------SKGHGFVQFETEESANAAIENLNGTTV 165
+ S G+ KG+ FV+F + ESA AI ++NGTT+
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 177 (67.4 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 58/209 (27%), Positives = 94/209 (44%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L DVT+ + FS+ + ++ D T G Y +V F A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD-TAGNDP-YCFVEFYEHRHAAAAL 63
Query: 71 EVKNHTQLHGKMLRISW----SCRDPDARKSGVAN---------LFVKNLIESIDNVRLQ 117
N ++ GK ++++W S + D S V + +FV +L I ++
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIK 123
Query: 118 EMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
F FG I +V GKSKG+GFV F + A AI+ + G +G ++I
Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 177 KKSDRVLPSPAAKY-TNLFMKNLDSDVTE 204
+K P+P + Y +N + D V +
Sbjct: 184 RKP----PAPKSTYESNTKQLSYDEVVNQ 208
Score = 172 (65.6 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 50/182 (27%), Positives = 89/182 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NL DVTE +++ FS+ G + + D G + FV F A AL AMN
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 253 G-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G ++G +V ++++ ++ + +V+V ++ ++T E++K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQ----DHFHVFVGDLSPEITTEDIK 123
Query: 312 AHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
A F+ G I+ A+V++D G +KG+GFV F + +A A+ G L + + A
Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183
Query: 371 RK 372
RK
Sbjct: 184 RK 185
Score = 146 (56.5 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 46/178 (25%), Positives = 82/178 (46%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIEN 159
++FV +L I ++ F FG I +V GKSKG+GFV F + A AI+
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 160 LNGTTVGDKRIYVGRFIKKS----------------DRVLPSPAAKYTNLFMKNLDSDVT 203
+ G +G ++I +K D V+ + ++ + S +T
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
E+ + + FS FG+I + + D +G+ FV F++ + A A+ ++NG+ I V+
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVV 279
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 150 (57.9 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 51/203 (25%), Positives = 89/203 (43%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++G + ++ + +L F +F + + V KD TG ++ + + AI+A
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 197
Query: 74 NHTQ-LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
+ + L G I D ++R LFV L + + +F+ +G I C V
Sbjct: 198 HEQKTLPGMTRPIQVKPADSESRGED-RKLFVGMLNKQQTEEDVYRLFEPYGVIEECTVL 256
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
DG SKG FV+F T A +AI L+G+ + + G SD +LP A+
Sbjct: 257 RGPDGNSKGCAFVKFSTHAEAQSAISALHGS----QTMPTG-----SDSLLPQGASSSLV 307
Query: 193 LFMKNLDSDVTEEHLVEKFSKFG 215
+ + D + T + + +FG
Sbjct: 308 VKFADTDKERTIRRMQQMVGQFG 330
Score = 132 (51.5 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
NLF+ +L + + L++ F FG + S + D S+ FGFV+FDNP A+ A++A
Sbjct: 513 NLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 572
Query: 251 MNGSVIGSKVLYAA-RAQKKAER 272
MNG IG K L + K A R
Sbjct: 573 MNGFQIGMKRLKVQLKRPKDASR 595
Score = 130 (50.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 48/168 (28%), Positives = 74/168 (44%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFE 148
+D DA K LF+ + +++ L+ +F+ FG I V G KG F+ +
Sbjct: 131 KDQDAIK-----LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYC 185
Query: 149 TEESANAAIENLNG--TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
ESA A L+ T G R +K +D K LF+ L+ TEE
Sbjct: 186 ARESAIKAQNALHEQKTLPGMTRPIQ---VKPADSESRGEDRK---LFVGMLNKQQTEED 239
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
+ F +G I + R +G S+G FV F +A+ A+ A++GS
Sbjct: 240 VYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHGS 287
Score = 128 (50.1 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NLF+ +L + + L +MF FG +IS KV +SK GFV F+ SA AAI+
Sbjct: 513 NLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 572
Query: 160 LNGTTVGDKRIYV 172
+NG +G KR+ V
Sbjct: 573 MNGFQIGMKRLKV 585
Score = 120 (47.3 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKA 350
+G N+++ ++ + D EL F GT+ S+KV D +K FGFV F +P A A
Sbjct: 510 EGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAA 569
Query: 351 VNTFHGYMLHRKPLYVAIAQRKE 373
+ +G+ + K L V + + K+
Sbjct: 570 IQAMNGFQIGMKRLKVQLKRPKD 592
Score = 120 (47.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 43/165 (26%), Positives = 73/165 (44%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ + ++ E+ L F +FGKI L + +D G +G F+ + + A +A A+
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 197
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ K L Q+ E + ++R L +V ++ T+E++
Sbjct: 198 HEQ----KTLPGM-----TRPIQVKPADSESRGEDRKL-------FVGMLNKQQTEEDVY 241
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
F G I V+R G +KG FV FS+ EA A++ HG
Sbjct: 242 RLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHG 286
Score = 53 (23.7 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 382 QYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 421
++ Q +AG+ AN+ S PS+ G S +P +P
Sbjct: 399 EFHQTLAGLSSPPANITTSAVPSIVTPIVNGFTS-IPHQP 437
Score = 37 (18.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 4 VPPTATTPASLYVGDLH 20
+PPT TP S G+ H
Sbjct: 388 LPPTPMTPVS---GEFH 401
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 219 (82.2 bits), Expect = 6.6e-16, P = 6.6e-16
Identities = 56/164 (34%), Positives = 83/164 (50%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED-GKSKGHGFVQFETEESANAAI 157
+ LFV L N L+ F+ FGN+ C V ++ +S+ GFV + T E A+AA+
Sbjct: 7 LCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAM 66
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
V K + V R + + D P AK +F+ L D+ E+ L E FS+FG I
Sbjct: 67 A-ARPHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMI 125
Query: 218 A-SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
S +I + G RGFGFV+F++ D A +A+ + G KV
Sbjct: 126 EKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKV 169
Score = 185 (70.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 50/172 (29%), Positives = 85/172 (49%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+VG L+ T+ L F +F +L V ++ RS C+G+V + + +A A+ +
Sbjct: 10 LFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAAR 69
Query: 74 NHTQLHGKMLRISWSCRDPDARK----SGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
H + GK + + + DA + + V +FV L + I+ L E F FG I
Sbjct: 70 PHV-VDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKS 128
Query: 130 KVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
+V T +D GK +G GFV FE +SA+ A+ L + ++ V + + K +
Sbjct: 129 EVITDKDTGKKRGFGFVHFEDNDSADKAVV-LKFHMINGHKVEVKKALTKQE 179
Score = 183 (69.5 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 59/196 (30%), Positives = 94/196 (47%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIAR-DENGTSRGFGFVNFDNPDD 243
S K LF+ L+ T + L F +FG + ++ + D+ SR FGFV + ++
Sbjct: 2 SEMEKLCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEE 61
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A A+ A V G V ++ RE + R E + K K ++V + D
Sbjct: 62 ADAAMAARPHVVDGKNV----EVKRAVARE-------DAGRPEALAKVK--KIFVGGLKD 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNT-FHGYMLHR 361
D+ +++L FSQ G I ++V+ D + G +GFGFV F + A KAV FH M++
Sbjct: 109 DIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFH--MING 166
Query: 362 KPLYVAIAQRKEDRQA 377
+ V A K++ QA
Sbjct: 167 HKVEVKKALTKQEIQA 182
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 226 (84.6 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 78/321 (24%), Positives = 143/321 (44%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+ +L++ +L +D L +F G + KV + ++G S+G+GF++F +A +
Sbjct: 79 IRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNL 138
Query: 158 ENLNGTTVGDK----RIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSK 213
+ NG + R+ + R P ++T +F+ +L DVT+ L E F
Sbjct: 139 QTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGP--EHT-VFVGDLAPDVTDHMLTETFKA 195
Query: 214 -FGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA-RAQKKA 270
+ + + D G S+G+GFV F + + RA+ MNG S+ + A KK
Sbjct: 196 VYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKP 255
Query: 271 EREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK 330
Q +Q + + ++V +D VT+++LK+ F Q G + K+
Sbjct: 256 LTMQPASYQNTQGNSGES-DPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPA--- 311
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
K GFV +++ A +A++ +G L + + ++ + ++Q Q AQ+ G
Sbjct: 312 --GKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQT--QPDQAQYGGG- 366
Query: 391 EGSSANVIPSGYPSLYYTTPP 411
G P GY + Y PP
Sbjct: 367 -GGYYGYPPQGYEAYGYAPPP 386
Score = 192 (72.6 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 67/273 (24%), Positives = 121/273 (44%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P +A SL++GDL P + + L + F + +V ++ G S YG++ F++
Sbjct: 73 PGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHA 132
Query: 65 DAIRAIEVKNHTQLHG--KMLRISWSCRDPDARKSGVA---NLFVKNLIESIDNVRLQEM 119
A R ++ N + + R++W+ R+ +FV +L + + L E
Sbjct: 133 TAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTET 192
Query: 120 FQN-FGNIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIK 177
F+ + ++ KV G+SKG+GFV+F E A+ +NG + + G
Sbjct: 193 FKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAAN 252
Query: 178 KSDRVLPSPAAKYTNLFMKNLDSDVT---------EEHLVEKFSK--FGKIASLLIARDE 226
K + PA+ Y N + +SD T ++ + E K FG+ L+ +
Sbjct: 253 KKPLTM-QPAS-YQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIP 310
Query: 227 NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK 259
G + GFV + N A +AL +NG+ +G +
Sbjct: 311 AG--KRCGFVQYANRACAEQALSVLNGTQLGGQ 341
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 191 (72.3 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 56/175 (32%), Positives = 88/175 (50%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
+++ N+ + + LQE+F + G I SCK+ + KS +GFV + A+ AI L
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKD--KSS-YGFVHYFDRRCASMAIMTL 120
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASL 220
NG + + + V R + + N+F+ +L +VT+ L + FS F +S
Sbjct: 121 NGRHIFGQPMKVNWAYATGQR---EDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSY 177
Query: 221 LI-AR---DEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKA 270
AR D+ G SRGFGFV+F N DA+ A+ MNG + S+ + A K A
Sbjct: 178 YRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGA 232
Score = 170 (64.9 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 49/175 (28%), Positives = 84/175 (48%)
Query: 4 VPP--TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
+PP TT S+Y G++H VT+ L + F+ S + CK +S+ YG+V++
Sbjct: 53 LPPGFDPTTCRSVYAGNIHTQVTEILLQEIFA---STGPIESCKLIRKDKSS-YGFVHYF 108
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARK-SGVANLFVKNLIESIDNVRLQEMF 120
A AI N + G+ ++++W+ S N+FV +L + + L + F
Sbjct: 109 DRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSF 168
Query: 121 QNFGNIIS----CKVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
F + S +V + G+S+G GFV F ++ A AI +NG V ++I
Sbjct: 169 SAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 223
Score = 154 (59.3 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLAS----VRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
+++VGDL P+VTD LFD+FS F S +S RV D TGRS +G+V+F + DA
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208
Query: 69 AIEVKNHTQLHGKMLRISWSCR 90
AI N + + +R +W+ +
Sbjct: 209 AINEMNGKWVSSRQIRCNWATK 230
Score = 141 (54.7 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 49/170 (28%), Positives = 83/170 (48%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
+++ N+ + VTE L E F+ G I S + R + + +GFV++ + A A+ +
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---YGFVHYFDRRCASMAIMTL 120
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG I + + A +RE H F N++V ++ +VTD L
Sbjct: 121 NGRHIFGQPMKVNWAYATGQREDTSSH-F--------------NIFVGDLSPEVTDAALF 165
Query: 312 AHFSQCGTITS----AKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHG 356
FS + +S A+VM D+K G ++GFGFV F + ++A A+N +G
Sbjct: 166 DSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 215
Score = 87 (35.7 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 30/116 (25%), Positives = 53/116 (45%)
Query: 139 SKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNL 198
+KG F + + + +E NG++ GR + D P ++T +++ NL
Sbjct: 229 TKGATFGEDKHSSDGKSVVELTNGSSED------GRELSNEDA--PENNPQFTTVYVGNL 280
Query: 199 DSDVTEEHLVEKFSKFGK--IASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+VT+ L F G I + + RD +GFGFV ++ D+A A++ N
Sbjct: 281 SPEVTQLDLHRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAIQMGN 331
Score = 81 (33.6 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQ--CGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAV 351
+ VYV N+ +VT +L F G I +V RD KGFGFV +++ +EA+ A+
Sbjct: 273 TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAI 327
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 196 (74.1 bits), Expect = 8.6e-16, Sum P(3) = 8.6e-16
Identities = 66/219 (30%), Positives = 113/219 (51%)
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIA--RDENGT--SRG 232
++ D++LP + LF+KNL+ +EE L + FSK G + S I+ RD+ G S G
Sbjct: 693 EEDDQILPG-----STLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMG 747
Query: 233 FGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERIL-KY 291
+GFV + P+ A++A+ + + L K +ERE + + KRK++ K
Sbjct: 748 YGFVQYKTPEAAQKAMRQLQHCTVDEHQLEV----KISERE-VKSGVAQAKRKKQTARKQ 802
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI---NKGFGFVCFSSPEEAS 348
S + V+NI T +EL+ F G + + ++ + KGI ++GFGF+ F + ++A
Sbjct: 803 TTSKILVRNIPFQATVKELRELFCTFGELKTVRLPK--KGIGGSHRGFGFIDFLTKQDAK 860
Query: 349 KAVNTF-HGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQH 386
KA + H L+ + L + A +E L+ + AQH
Sbjct: 861 KAFSALCHSTHLYGRRLVLEWADAEETVD-DLRRKTAQH 898
Score = 189 (71.6 bits), Expect = 7.8e-14, Sum P(2) = 7.8e-14
Identities = 61/206 (29%), Positives = 104/206 (50%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED--GK--SKGHGFVQFETEESANA 155
+ LF+KNL LQ+ F G + SC ++ D GK S G+GFVQ++T E+A
Sbjct: 702 STLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQK 761
Query: 156 AIENLNGTTVGDKRIYVG---RFIKKS---DRVLPSPAAKYTN--LFMKNLDSDVTEEHL 207
A+ L TV + ++ V R +K + A K T + ++N+ T + L
Sbjct: 762 AMRQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKEL 821
Query: 208 VEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGS--VIGSK-VLYA 263
E F FG++ ++ + + G+ RGFGF++F DA++A A+ S + G + VL
Sbjct: 822 RELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSALCHSTHLYGRRLVLEW 881
Query: 264 ARAQKKAE--REQILRHQFEEKRKER 287
A A++ + R + +H + +K+R
Sbjct: 882 ADAEETVDDLRRKTAQHFHDAPKKKR 907
Score = 145 (56.1 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 40/133 (30%), Positives = 68/133 (51%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIE 158
++ L VKNL + R ++MF +FG + C + ++DGK + GFV F+TEE A A++
Sbjct: 1 MSRLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALK 60
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNL--FMKNLDSDVTEEHLVEKFSKFGK 216
+ N + V R+ V D P +K+T K+ + T E ++ K K
Sbjct: 61 HFNKSFVDTSRVTVELCTDFGDPNKARPWSKHTRQPSSKKDTEEKKTHEQGEKEKKKPKK 120
Query: 217 IASLL--IARDEN 227
I ++L + +DE+
Sbjct: 121 ILNVLGDLEKDES 133
Score = 144 (55.7 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 47/209 (22%), Positives = 101/209 (48%)
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
+KS R P ++T + ++ +V E+ V++F K ++ A++ +G + G+ +V
Sbjct: 277 QKSTRPAIEPTTEFT-VKLRGAPFNVKEQQ-VKEFMMPLKPVAIRFAKNSDGRNSGYVYV 334
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQ---------KKAEREQILRHQFEEKRKER 287
+ + + RAL ++ +G + + RA K++E E+ + ++ +E
Sbjct: 335 DLRSEAEVERALR-LDKDYMGGRYIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEE 393
Query: 288 ILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN-KGFGFVCFSSPEE 346
+ G ++++N+ T+E+LK FS+ G ++ D KGF FV + PE
Sbjct: 394 DVAESG-RLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPEN 452
Query: 347 ASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
A A+ G+ + L+V ++ K+++
Sbjct: 453 AVSALAQLDGHTFQGRVLHVMASRLKKEK 481
Score = 137 (53.3 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 34/113 (30%), Positives = 65/113 (57%)
Query: 267 QKKAEREQILRHQFEEKRKE---RILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSA 323
+K A + ++++ EE+ +E +IL GS +++KN++ ++E L+ FS+CG + S
Sbjct: 674 EKSAVKNDSVQNEEEEEEEEEDDQILP--GSTLFIKNLNFITSEETLQKTFSKCGVVKSC 731
Query: 324 KVM--RDEKG--INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
+ RD+ G ++ G+GFV + +PE A KA+ + L V I++R+
Sbjct: 732 TISKKRDKAGKLLSMGYGFVQYKTPEAAQKAMRQLQHCTVDEHQLEVKISERE 784
Score = 90 (36.7 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 43/169 (25%), Positives = 76/169 (44%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+ +KNL S V L FS G + +L+ +G + V F P +A+RA +
Sbjct: 587 ILVKNLPSGVQVADLEALFSPHGSLGRVLLP--PSGLT---AIVEFLEPTEAKRAFMKLA 641
Query: 253 GSVIGSKVLY-------------AARAQ-----KKAEREQILRHQFEEKRKE---RILKY 291
+ LY A R + K A + ++++ EE+ +E +IL
Sbjct: 642 YTKFQHVPLYLEWAPVAVFTTPSAPRPEPQTKEKSAVKNDSVQNEEEEEEEEEDDQILP- 700
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM--RDEKGINKGFGF 338
GS +++KN++ ++E L+ FS+CG + S + RD+ G G+
Sbjct: 701 -GSTLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGY 748
Score = 82 (33.9 bits), Expect = 8.6e-16, Sum P(3) = 8.6e-16
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSKGHGFVQFET 149
+ D +SG LF++N+ + L+E+F G + S K KG FV +
Sbjct: 392 EEDVAESG--RLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMI 449
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
E+A +A+ L+G T + ++V K ++ P A ++ + + D+
Sbjct: 450 PENAVSALAQLDGHTFQGRVLHVMASRLKKEKADQGPDAPGSSSYKRKKDA 500
Score = 75 (31.5 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 18/73 (24%), Positives = 40/73 (54%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI-EV 72
L++ ++ T+ +L + FS+ L+ V DS T + + +V ++ P +A+ A+ ++
Sbjct: 401 LFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 460
Query: 73 KNHTQLHGKMLRI 85
HT G++L +
Sbjct: 461 DGHT-FQGRVLHV 472
Score = 68 (29.0 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIK-KSDRVLPS 185
++ + A + DG++ G+ +V +E A+ L+ +G + I V R K+DR
Sbjct: 316 VAIRFAKNSDGRNSGYVYVDLRSEAEVERALR-LDKDYMGGRYIEVFRANNFKNDRRSAK 374
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVE 209
+ N F++ L D EE + E
Sbjct: 375 RSEMEKN-FVRELKDDEEEEDVAE 397
Score = 57 (25.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 27/127 (21%), Positives = 56/127 (44%)
Query: 22 DVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGK 81
+V + ++ + K +A +R K+S GR++ Y YV+ S + RA+ + + + G+
Sbjct: 300 NVKEQQVKEFMMPLKPVA-IRFAKNSD-GRNSGYVYVDLRSEAEVERALRL-DKDYMGGR 356
Query: 82 MLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV---ATSEDGK 138
+ + + + R+S + KN + + + +E G + + T ED K
Sbjct: 357 YIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLK 416
Query: 139 S--KGHG 143
HG
Sbjct: 417 ELFSKHG 423
Score = 48 (22.0 bits), Expect = 8.6e-16, Sum P(3) = 8.6e-16
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
L V +L + + F++F +L + K + G+ +G+V F + DA +A++
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTLTDCAL-KFTKDGKFRKFGFVGFKTEEDAQKALK 60
Score = 41 (19.5 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 58 VNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88
V FL P +A RA +T+ L + W+
Sbjct: 625 VEFLEPTEAKRAFMKLAYTKFQHVPLYLEWA 655
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 174 (66.3 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 52/196 (26%), Positives = 95/196 (48%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIA---RDENGTSR---GFGFVNFDNPDDARR 246
+++KNL+ T E LV KF ++ IA +N + R GFGF+ F + A
Sbjct: 680 VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYE 739
Query: 247 ALEAMNGSVI-GSKVLYAARAQKKAEREQI-LRHQFEEKRKERILKYKG------SNVYV 298
++ +NGS I G ++ + + ++I R + E K+ I G S + +
Sbjct: 740 CIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIKSNGGQPNKPSSKIII 799
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM 358
KN+ + T +E++ F+ G I S ++ + G ++GFGFV F + EEA A+
Sbjct: 800 KNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEALGNSH 859
Query: 359 LHRKPLYVAIAQRKED 374
+ + L + A++ ++
Sbjct: 860 FYGRHLVLQYAEQDKN 875
Score = 133 (51.9 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 62/227 (27%), Positives = 104/227 (45%)
Query: 104 VKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
VK L + + + R +E F+ FG + K+ +DGKS+ GF+ F TE+SA A+ +LNGT
Sbjct: 8 VKQLPKHLTDKRFKEHFEKFGTVTDAKII-KKDGKSRLFGFIGFSTEQSAKNAL-SLNGT 65
Query: 164 TVGDKRIYVGRFIKKSDRVLPSPAAKYT-----NLFMKNLDSDVTEEHLVEKFSKFGKIA 218
+ +I V S+ P +KY+ N + ++ + ++ L K K + +
Sbjct: 66 FIDTSKIVVETATVASETTENRPWSKYSIGSSSNKRLTEMEKEKEKKELKRKQDKLEQQS 125
Query: 219 ----------SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268
SLL A EN F+N P R+ E + IG K+ R ++
Sbjct: 126 NKKQKKSHTNSLLDAELENDPEYQ-EFLNLVAPQANRKVWEN-DDKEIG-KI---NRGEE 179
Query: 269 KAEREQILRHQFEEKR-----KERILKYKGSNVYVKNIDD-DVTDEE 309
+ E + +Q E+ + K++I G N + +D D +DEE
Sbjct: 180 EGEEGEENDNQVEDGKLPFSGKKKIELDHGKNKDLLVFEDADASDEE 226
Score = 118 (46.6 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 178 KSDRVLPS-PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
KS+ P+ P++K + +KNL + T + + + F+ +G+I S+ I + NG RGFGFV
Sbjct: 784 KSNGGQPNKPSSK---IIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFV 840
Query: 237 NFDNPDDARRALEAMNGS 254
F ++A+ A+EA+ S
Sbjct: 841 EFLTEEEAKNAMEALGNS 858
Score = 114 (45.2 bits), Expect = 8.3e-05, Sum P(3) = 8.3e-05
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAM 251
+F++NL EE L + FSKFGKI+ + I D ++ S+G F+ + P++A +AL M
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 252 NGSVIGSKVLY 262
+G V ++++
Sbjct: 423 DGKVFQGRLIH 433
Score = 109 (43.4 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 36/122 (29%), Positives = 58/122 (47%)
Query: 81 KMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK-S 139
K ++ D D +SG +FV+NL S L+++F FG I + D K S
Sbjct: 344 KYFEHDYTKEDEDVGESG--RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKS 401
Query: 140 KGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLD 199
KG F+ + E+A A+ +++G +++ GR I VLP AA F +N D
Sbjct: 402 KGIAFILYLIPENAVQALNDMDG------KVFQGRLI----HVLPGKAAP-AKQFSENKD 450
Query: 200 SD 201
++
Sbjct: 451 NN 452
Score = 108 (43.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
T + +K L +T++ E F KFG + I + ++G SR FGF+ F A+ AL +
Sbjct: 4 TRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIK-KDGKSRLFGFIGFSTEQSAKNAL-S 61
Query: 251 MNGSVIG-SKVLY--AARAQKKAEREQILRHQFEEKRKERI 288
+NG+ I SK++ A A + E ++ +R+
Sbjct: 62 LNGTFIDTSKIVVETATVASETTENRPWSKYSIGSSSNKRL 102
Score = 89 (36.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKA 350
+ ++V+N+ +E+L+ FS+ G I+ + D + +KG F+ + PE A +A
Sbjct: 359 ESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQA 418
Query: 351 VNTFHGYMLHRKPLYV 366
+N G + + ++V
Sbjct: 419 LNDMDGKVFQGRLIHV 434
Score = 80 (33.2 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSK------GHGFVQFETEESANA 155
+++KNL N L F++ + ++ +AT + K+ G GF++F +++ A
Sbjct: 680 VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYE 739
Query: 156 AIENLNGTTV 165
I+ LNG+++
Sbjct: 740 CIKKLNGSSI 749
Score = 67 (28.6 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 13/72 (18%), Positives = 37/72 (51%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++V +L + +L FS+F ++ + + D + +S ++ +L P +A++A+
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 74 NHTQLHGKMLRI 85
+ G+++ +
Sbjct: 423 DGKVFQGRLIHV 434
Score = 65 (27.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
T L +KN+ E L E FSKFG+++ ++++ +R + + +P++A+
Sbjct: 553 TVLLVKNIPFKTQEHELHELFSKFGELSRVVLS-----PARTIALIEYIHPNEAK 602
Score = 58 (25.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 23/104 (22%), Positives = 45/104 (43%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
V L +TD + F +F ++ ++ K G+S +G++ F + A A+ + N
Sbjct: 8 VKQLPKHLTDKRFKEHFEKFGTVTDAKIIKKD--GKSRLFGFIGFSTEQSAKNALSL-NG 64
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
T + + + + + ++ + K I S N RL EM
Sbjct: 65 TFIDTSKIVVETATVASETTEN---RPWSKYSIGSSSNKRLTEM 105
Score = 55 (24.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 17/80 (21%), Positives = 34/80 (42%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDST----TGRSTC-YGYVNFLSPHDAIR 68
+Y+ +L+ T+ L F K +V + + + R C +G++ F S A
Sbjct: 680 VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYE 739
Query: 69 AIEVKNHTQLHGKMLRISWS 88
I+ N + + G + + S
Sbjct: 740 CIKKLNGSSIDGYEISLKLS 759
Score = 50 (22.7 bits), Expect = 8.3e-05, Sum P(3) = 8.3e-05
Identities = 22/77 (28%), Positives = 31/77 (40%)
Query: 292 KGSN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASK 349
K SN + VKNI + EL FS+ G + S V+ + I + + P EA
Sbjct: 549 KRSNTVLLVKNIPFKTQEHELHELFSKFGEL-SRVVLSPARTI----ALIEYIHPNEAKV 603
Query: 350 AVNTFHGYMLHRKPLYV 366
H PLY+
Sbjct: 604 GFKNLAYSKFHHVPLYL 620
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 151 (58.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 50/188 (26%), Positives = 85/188 (45%)
Query: 239 DNPD--DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYK-GSN 295
++PD +ARRAL+ GS G V + + + + GS
Sbjct: 122 EDPDGENARRALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVITNLQAGRLGST 181
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
++V N+D V ++LK FS GT+ A + D+ G ++G G V F EA +A++ F+
Sbjct: 182 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 241
Query: 356 GYMLHRKPLYVAIAQRK---EDRQAHLQLQYAQHMAGIEGSSANVIPSGYP-SLYYTTPP 411
G L +P++V + + ED ++H + Q G+ G + P G P S
Sbjct: 242 GQFLFDRPMHVKMDDKSVPHEDYRSH-DSKTPQLPRGLGGIGMGLGPGGQPISASQLNIG 300
Query: 412 GIVSQVPP 419
G++ + P
Sbjct: 301 GVMGNLGP 308
Score = 140 (54.3 bits), Expect = 9.9e-16, Sum P(3) = 9.9e-16
Identities = 32/84 (38%), Positives = 51/84 (60%)
Query: 285 KERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSP 344
+ERI KG+ ++V+N+ D+T ++LK FSQCG + A++ + E G +KG G V F SP
Sbjct: 448 RERIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSP 505
Query: 345 EEASKAVNTFHGYMLHRKPLYVAI 368
E A KA +G + + + V +
Sbjct: 506 ESAEKACRIMNGIKISGREIDVRL 529
Score = 130 (50.8 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
+K +F++NL D+T + L EKFS+ G + I + ENG S+G G V FD+P+ A +A
Sbjct: 453 SKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKA 511
Query: 248 LEAMNGSVIGSK 259
MNG I +
Sbjct: 512 CRIMNGIKISGR 523
Score = 109 (43.4 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+FV+NL + +L+E F G+++ ++ E+GKSKG G V+F++ ESA A +N
Sbjct: 458 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKM-ENGKSKGCGTVRFDSPESAEKACRIMN 516
Query: 162 GTTVGDKRIYV 172
G + + I V
Sbjct: 517 GIKISGREIDV 527
Score = 107 (42.7 bits), Expect = 9.9e-16, Sum P(3) = 9.9e-16
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
+ +F+ NLD V + L E FS G + I D++G SRG G V F+ +A +A+
Sbjct: 180 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 239
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRH 278
NG + + ++ K E H
Sbjct: 240 FNGQFLFDRPMHVKMDDKSVPHEDYRSH 267
Score = 101 (40.6 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
+ +FV NL + +L+E+F G + + +DGKS+G G V FE A AI
Sbjct: 180 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 239
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLP 184
NG + D+ ++V K D+ +P
Sbjct: 240 FNGQFLFDRPMHV----KMDDKSVP 260
Score = 87 (35.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 29/110 (26%), Positives = 52/110 (47%)
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKS-DRVLPSPAAKYTN---LFMKNLDSDVT 203
E +E L ++G+K+ RF S D+ + K N +F+ N+ D+
Sbjct: 2 ENDEPVKEEKSELKEKSMGNKK--ANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMK 59
Query: 204 EEHLVEKF-SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+ + + K G++ + + +D G SRG G V F + + ++ALE MN
Sbjct: 60 WQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMN 109
Score = 73 (30.8 bits), Expect = 9.9e-16, Sum P(3) = 9.9e-16
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 102 LFVKNLIESIDNVRLQEMF-QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
+F+ N+ + ++++ + G + ++ +GKS+G G V+F+ EE A+E +
Sbjct: 49 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 108
Query: 161 N 161
N
Sbjct: 109 N 109
Score = 56 (24.8 bits), Expect = 5.3e-14, Sum P(3) = 5.3e-14
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 41 VRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKS 97
V + KD+ G+S G V F +A+E N L G+ L I DPD +
Sbjct: 77 VELFKDAE-GKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK---EDPDGENA 129
Score = 47 (21.6 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++V +L V +L + FS ++ + K+ G+S G V F +A++AI
Sbjct: 180 STIFVANLDFKVGWKKLKEVFSIAGTVKRADI-KEDKDGKSRGMGTVTFEQAIEAVQAIS 238
Query: 72 VKNHTQLHGKMLRI 85
+ N L + + +
Sbjct: 239 MFNGQFLFDRPMHV 252
Score = 39 (18.8 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 327 RDEKGINKGFG 337
R + GIN+GFG
Sbjct: 349 RGDIGINRGFG 359
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 227 (85.0 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 57/181 (31%), Positives = 95/181 (52%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NLF+ NL +VTEE L ++F +FG++++ ++ + G SRGFG+V F N DA +A EAM
Sbjct: 278 NLFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337
Query: 252 NGSVI-GSKVLYAARAQKKAEREQILRHQFEEKRKERILKY------KGSNVYVKNIDDD 304
I G K+ + A ++Q F+E+ + R + + ++V N+
Sbjct: 338 KEHEIDGRKINLDYATGRPANKDQ---GGFKERAQNRARSFGDQTSPESDTLFVGNLPFS 394
Query: 305 VTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++ + F G + ++ D E G KGFG+V +SS +EA KA N G + +P
Sbjct: 395 ANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGAEIDGRP 454
Query: 364 L 364
+
Sbjct: 455 I 455
Score = 125 (49.1 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+L+VG+L +VT+ L F +F L S R+ + TGRS +GYV F + DA +A E
Sbjct: 277 ANLFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNAADAAKAYE 335
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSG 98
++ G+ + + ++ P + G
Sbjct: 336 AMKEHEIDGRKINLDYATGRPANKDQG 362
Score = 100 (40.3 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
LFV NL S + + E+F GN++ ++ T E G+ KG G+VQ+ + + A A L
Sbjct: 386 LFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNEL 445
Query: 161 NGTTVGDKRI 170
G + + I
Sbjct: 446 QGAEIDGRPI 455
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 143 (55.4 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 33/84 (39%), Positives = 51/84 (60%)
Query: 285 KERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSP 344
KER L KG+ ++V+N+ D+T ++LK FSQCG + A++ + E G +KG G V F SP
Sbjct: 456 KER-LGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSP 513
Query: 345 EEASKAVNTFHGYMLHRKPLYVAI 368
E A KA +G + + + V +
Sbjct: 514 ESAEKACRIMNGIKISGREIDVRL 537
Score = 140 (54.3 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVN 352
GS ++V N+D V ++LK FS GT+ A + D+ G ++G G V F EA +A++
Sbjct: 182 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 241
Query: 353 TFHGYMLHRKPLYVAIAQRK---EDRQAHLQLQYAQHMAGIEGSSANVIPSGYP 403
F+G L +P++V + + ED + + + +Q G+ G + P G P
Sbjct: 242 MFNGQFLFDRPMHVKMDDKSVPHEDFRV-VDSKASQLPRGLGGIGMGLGPGGQP 294
Score = 130 (50.8 bits), Expect = 7.5e-12, Sum P(3) = 7.5e-12
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
+K +F++NL D+T + L EKFS+ G + I + ENG S+G G V FD+P+ A +A
Sbjct: 461 SKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKA 519
Query: 248 LEAMNGSVIGSK 259
MNG I +
Sbjct: 520 CRIMNGIKISGR 531
Score = 103 (41.3 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
+ +F+ NLD V + L E FS G + I D++G SRG G V F+ +A +A+
Sbjct: 183 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 242
Query: 251 MNGSVIGSKVLYAARAQKKAERE 273
NG + + ++ K E
Sbjct: 243 FNGQFLFDRPMHVKMDDKSVPHE 265
Score = 101 (40.6 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
+ +FV NL + +L+E+F G + + +DGKS+G G V FE A AI
Sbjct: 183 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 242
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLP 184
NG + D+ ++V K D+ +P
Sbjct: 243 FNGQFLFDRPMHV----KMDDKSVP 263
Score = 88 (36.0 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 23/90 (25%), Positives = 44/90 (48%)
Query: 164 TVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF-SKFGKIASLLI 222
++G+K + +KS A +F+ N+ D+ + + + K G++ + +
Sbjct: 23 SLGNKNRFHPYSKEKSTGSAEKKAINRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVEL 82
Query: 223 ARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+D G SRG G V F + + ++ALE MN
Sbjct: 83 FKDAEGKSRGCGVVEFKDEEFVKKALETMN 112
Score = 73 (30.8 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 102 LFVKNLIESIDNVRLQEMF-QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
+F+ N+ + ++++ + G + ++ +GKS+G G V+F+ EE A+E +
Sbjct: 52 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 111
Query: 161 N 161
N
Sbjct: 112 N 112
Score = 52 (23.4 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 41 VRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKS 97
V + KD+ G+S G V F +A+E N L G+ L I AR++
Sbjct: 80 VELFKDAE-GKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPEGEHARRA 135
Score = 47 (21.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 17/74 (22%), Positives = 36/74 (48%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++V +L V +L + FS ++ + K+ G+S G V F +A++AI
Sbjct: 183 STIFVANLDFKVGWKKLKEVFSIAGTVKRADI-KEDKDGKSRGMGTVTFEQAIEAVQAIS 241
Query: 72 VKNHTQLHGKMLRI 85
+ N L + + +
Sbjct: 242 MFNGQFLFDRPMHV 255
Score = 38 (18.4 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKP-DL 567
GG + R D+ G + P K+ LG + + ++ P DL
Sbjct: 433 GGGLDRNIDIDRGFVPGPMGGAMKERLGSKGNQIFVRNLPFDL 475
Score = 37 (18.1 bits), Expect = 9.2e-05, Sum P(4) = 9.2e-05
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 327 RDEKGINKGFG 337
R E +N+GFG
Sbjct: 369 RSEMALNRGFG 379
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 233 (87.1 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 64/201 (31%), Positives = 106/201 (52%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIAR--DENGT--SRGFGFVNFDNPDDARRAL 248
LF+KNL+ TE L E FSK G + S I++ D+ GT S GFGFV + P+ A++AL
Sbjct: 395 LFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKAL 454
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ G ++ L + ++A R + ++K+ + K K S + V+NI T
Sbjct: 455 RRLQGCIVDGHKL-EVKISERAVRPAVK----SSRKKQTVKKQKTSKILVRNIPFQATVR 509
Query: 309 ELKAHFSQCGTITSAKVMRDEKGI--NKGFGFVCFSSPEEASKAVNTF-HGYMLHRKPLY 365
E++ FS G + + ++ + G ++GFGFV F + ++A KA N H L+ + L
Sbjct: 510 EIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAFNALCHSTHLYGRRLV 569
Query: 366 VAIAQRKEDRQAHLQLQYAQH 386
+ A +E +A L+ + A H
Sbjct: 570 LEWADTEETVEA-LRRRTADH 589
Score = 183 (69.5 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 64/227 (28%), Positives = 110/227 (48%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED--GK--SKGHGFVQFETEESANAAI 157
LF+KNL + L+E F G + SC ++ +D G S G GFV+++ ESA A+
Sbjct: 395 LFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKAL 454
Query: 158 ENLNGTTVGDKRIYVG---RFIK---KSDRVLPSPAAKYTN-LFMKNLDSDVTEEHLVEK 210
L G V ++ V R ++ KS R + + T+ + ++N+ T + E
Sbjct: 455 RRLQGCIVDGHKLEVKISERAVRPAVKSSRKKQTVKKQKTSKILVRNIPFQATVREIREL 514
Query: 211 FSKFGKIASLLIARDENGTS--RGFGFVNFDNPDDARRALEAMNGS--VIGSK-VLYAAR 265
FS FG++ ++ + + GT RGFGFV+F DA++A A+ S + G + VL A
Sbjct: 515 FSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAFNALCHSTHLYGRRLVLEWAD 574
Query: 266 AQKKAE--REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++ E R + H + +K++ + G + ++ DE L
Sbjct: 575 TEETVEALRRRTADHFHDSPKKKKRSEMLGEILEQLEEEEGNKDEAL 621
Score = 127 (49.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 269 KAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMR- 327
K E + + E++ ++ G +++KN++ T+ LK FS+ G + S + +
Sbjct: 368 KGSEETSAQDEEEDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKK 427
Query: 328 -DEKG--INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
D+ G ++ GFGFV + PE A KA+ G ++ L V I++R
Sbjct: 428 KDKAGTLLSMGFGFVEYKKPESAQKALRRLQGCIVDGHKLEVKISER 474
Score = 40 (19.1 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 137 GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGR 174
GKS G FV ++E A++ +G + + V R
Sbjct: 7 GKSTGFIFVDLKSEAEVQKALKRKK-EYIGGQYVEVSR 43
Score = 39 (18.8 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 47 STTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86
+T G+ST + +V+ S + +A++ K + G+ + +S
Sbjct: 4 NTQGKSTGFIFVDLKSEAEVQKALKRKKE-YIGGQYVEVS 42
WARNING: HSPs involving 1174 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 629 580 0.00081 120 3 11 22 0.42 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1424
No. of states in DFA: 610 (65 KB)
Total size of DFA: 294 KB (2152 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 53.41u 0.15s 53.56t Elapsed: 00:00:02
Total cpu time: 53.52u 0.15s 53.67t Elapsed: 00:00:02
Start: Fri May 10 04:43:07 2013 End: Fri May 10 04:43:09 2013
WARNINGS ISSUED: 2