BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043470
(629 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/638 (71%), Positives = 533/638 (83%), Gaps = 13/638 (2%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
MAV P PASLYVGDLHPD+TDG LFDAFSEFKSLASVR+C+DS++GRS CYGYVNF
Sbjct: 1 MAVPPTVPAAPASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNF 60
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
+SP DA AIE KNHT LHGK++R+ WS RDPDAR+SG+ N+FVKNL +SIDNVRLQ MF
Sbjct: 61 ISPQDASHAIEAKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMF 120
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
Q FGNI+SCKV +EDGKSKG+GFVQFE+EE ANAAIE LNG + K+IY G+F++K+D
Sbjct: 121 QKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTD 180
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
RVLP+P AKYTNL++KNLD DVTEE L EKF +FGKIASL+I++DENG SRGFGFVNF++
Sbjct: 181 RVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFES 240
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
P+DA+RALEA+NG +GSKVLY ARAQKKAEREQ+LR QFEEKR E+ILKY+GSNVYVKN
Sbjct: 241 PEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKN 300
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
IDD+V D++L+ HFS CG ITSAK+MRD+KGI+KGFGFVCFS+P+EASKAVNTFHGYM H
Sbjct: 301 IDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFH 360
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
RKPLYVAIAQRKEDRQA LQL YAQ MAG+ G S VIP GYP LYYT PPG+ +PPR
Sbjct: 361 RKPLYVAIAQRKEDRQAQLQLHYAQRMAGLAGPSTPVIPGGYPPLYYTAPPGV---IPPR 417
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPV---NPKHNRQNRGRMNGNMLPQVGAH 477
GLMYQPLGLRTGWRAN +PPTRPAFQ S +P+ P+ +RQNRGR NG+ +PQ G H
Sbjct: 418 QGLMYQPLGLRTGWRANNLIPPTRPAFQPSSIPLMPNTPRQHRQNRGRTNGH-IPQGGGH 476
Query: 478 ------YMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
++QQ +Q S KDS NQQ+ GQ+KYVPNGR E++KGSG+ NS G ++
Sbjct: 477 STAFMPHLQQPTQPVISPKDSINQQRAGQAKYVPNGRSYEMSKGSGIPSAASNSVGTGSQ 536
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
+ML+ MLAA SPEQQKQILGE LYPLV+K KPDL AKITGMLLEMDNSELLLLLESPE
Sbjct: 537 GSEMLSSMLAAASPEQQKQILGEHLYPLVQKQKPDLAAKITGMLLEMDNSELLLLLESPE 596
Query: 592 SLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
SLA KVEEAVQVLKLS++K S Q+ +HP+YL+AEVAVN
Sbjct: 597 SLAAKVEEAVQVLKLSKSKPSGQDTLHPSYLAAEVAVN 634
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/635 (71%), Positives = 530/635 (83%), Gaps = 14/635 (2%)
Query: 4 VPPT--ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
VP T AT ASLYVG+LH DV+DG+L DAFSEF +LASVRVC+DS+TGRS CYGYVNF+
Sbjct: 3 VPSTISATATASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFI 62
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
SP DAIRAIE KNHT L+GK++R+ WS RDPDAR++G+ N++VKNL ESIDNV LQE+F
Sbjct: 63 SPEDAIRAIETKNHTPLNGKLMRVMWSHRDPDARRNGIGNVYVKNLSESIDNVGLQELFG 122
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FG ++SCKVAT EDGKSKGHGFVQFE+E+SAN+AIE LNG+ VGDK+IYVG+F+KKSDR
Sbjct: 123 EFGTVLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFVKKSDR 182
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
VLPSP AKYTNL++KNLD +TEE L EKFS+FGKI S+ IARDE G+SRGFGFVNF+NP
Sbjct: 183 VLPSPDAKYTNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENP 242
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
DDAR A+E MNG+ +GSKVLY RAQK+AEREQILR QFEEKRKE+I K+KGSNVYVKNI
Sbjct: 243 DDARWAMERMNGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNI 302
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DDDVTDEEL+ HFSQCGTITSAK+M+D+KG +KGFGFVCFSS EEASKAVNTFHGYM HR
Sbjct: 303 DDDVTDEELREHFSQCGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHR 362
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 421
KPLYVAIAQRKE+RQA LQLQYAQ +AG G S VIP GY LYYT P SQV PRP
Sbjct: 363 KPLYVAIAQRKEERQAQLQLQYAQRIAGFHGPSTPVIPGGYTPLYYTAP----SQVHPRP 418
Query: 422 GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNP---KHNRQNRGRMNGNMLPQVGAH- 477
G+MYQPL +R GWR NGF PP+RP FQ S LPV P + ++Q R RMNG++LPQ G
Sbjct: 419 GMMYQPLAMRPGWRGNGFAPPSRPVFQPSHLPVMPISQRQHKQGRVRMNGHVLPQGGTQS 478
Query: 478 --YMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM 535
Y+QQ +Q S KD SN Q+ GQ+KYVPNGR +++KGSGV NS G +++ ++
Sbjct: 479 VSYVQQPAQPLTSLKDPSN-QRAGQAKYVPNGRTCDVSKGSGVLSAAPNSTGPVSQGSEV 537
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L+ MLAA SP++QKQILGE+LYPLV KHKPDLVAKITGMLLEMDNSELLLLLESPESLA
Sbjct: 538 LSSMLAAASPDEQKQILGEQLYPLVRKHKPDLVAKITGMLLEMDNSELLLLLESPESLAA 597
Query: 596 KVEEAVQVLKLS-EAKVSTQEAIHPNYLSAEVAVN 629
KVEEAVQVLK+S + KVS Q+ +HPNYLSAEVAVN
Sbjct: 598 KVEEAVQVLKISNKTKVSGQDTLHPNYLSAEVAVN 632
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 17/195 (8%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
V+P +LYV +L P +T+ L + FSEF + SV + +D G S +G+VNF +
Sbjct: 183 VLPSPDAKYTNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDE-CGSSRGFGFVNFEN 241
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDP-----------DARKSGV-----ANLFVKN 106
P DA A+E N T+L K+L + + + + RK + +N++VKN
Sbjct: 242 PDDARWAMERMNGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKN 301
Query: 107 LIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG 166
+ + + + L+E F G I S K+ + G+SKG GFV F + E A+ A+ +G
Sbjct: 302 IDDDVTDEELREHFSQCGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFH 361
Query: 167 DKRIYVGRFIKKSDR 181
K +YV +K +R
Sbjct: 362 RKPLYVAIAQRKEER 376
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/638 (68%), Positives = 518/638 (81%), Gaps = 11/638 (1%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
MAV P A PASLYVGDLHPDV+D L DAFSEFKSLASVRVCKDS+TG+S CYGY+NF
Sbjct: 1 MAVHPSVAAAPASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNF 60
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
+SP DAIRAIE+KN++ L+GK +R+ WS RDPDARKS + NLFVKNL ESIDN LQ++F
Sbjct: 61 VSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIF 120
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
+ +GNI+S KV TSEDGKSKG+GFVQFE+EES+ AIE LNG TV DK +YVG+F+KKSD
Sbjct: 121 KKYGNILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSD 180
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
R+LP P A+YTNL+MKNLD DV+E L EKFS FGKI SL+IA+D NG S+GFGFVN+DN
Sbjct: 181 RILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDN 240
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
PDDA++A+EAMNGS +GSK+LY ARAQKKAEREQIL HQFEEK+KE+ILKYKGSN+YVKN
Sbjct: 241 PDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKN 300
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
IDD V+DEEL+ HFS CGTITSAK+MRD+KGI+KGFGFVCFS+PEEA+KAVNTFHG+M H
Sbjct: 301 IDDHVSDEELRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYH 360
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
KPLYVA+AQRKEDR+A LQLQYAQ +A + G S +IPSGYP YY G++S VPPR
Sbjct: 361 GKPLYVALAQRKEDRKAQLQLQYAQQLARLSGPSTAIIPSGYPPYYYAA-SGVISHVPPR 419
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPV---NPKHNRQNRGRMNGNMLPQVGAH 477
GLMYQ L LR GW ANGF PP R +FQ SP+P N + +RQNRG++NGN + Q H
Sbjct: 420 AGLMYQHLALRPGWGANGFAPPAR-SFQQSPVPAVSNNTRQHRQNRGKLNGNSIAQGNTH 478
Query: 478 ---YM---QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
Y+ QQ SQ SS+DSS QQ+ GQ++Y+P+GR R++ KGSG S NSG ++
Sbjct: 479 SGTYLPQAQQISQPVISSRDSSTQQRTGQARYIPSGRQRDVEKGSGSSSVGSNSGRGGSQ 538
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
+ML+ +LA +PEQQK+ILGE LY LV K KP L AKITGMLLEMDN ELLLLLESPE
Sbjct: 539 GSEMLHSLLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGELLLLLESPE 598
Query: 592 SLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
SL+ KVEEAVQVLK S+ KVS Q+ +H N+LSAEVAVN
Sbjct: 599 SLSAKVEEAVQVLKNSKTKVSGQDVLHSNFLSAEVAVN 636
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/636 (66%), Positives = 506/636 (79%), Gaps = 35/636 (5%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
VPP+AT PASLYVGDLHPD++D +L DAFS+FK+LASVR+C+DS++G+S CYGYVNFLSP
Sbjct: 3 VPPSAT-PASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSP 61
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
HDAIRAIEVKNH+ L+GK +R+ WS RDPDARKS + N+FVKNL ESIDN L++MF+ F
Sbjct: 62 HDAIRAIEVKNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKF 121
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
GNI+S KV SEDGKSKG+GFVQFETEESANAAIE LNG VGDK+IYVG+F+KKSDR+
Sbjct: 122 GNILSSKVVMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRIS 181
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
P +YTNL+MKNLD D++E L EKFS FGKI SL +A+D NG S+GFGFVNFDNP+D
Sbjct: 182 SGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPED 241
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A+RA+E MNG +GSK+LY ARAQKKAEREQIL QFEEKRKE++LKYKGSN+YVKNIDD
Sbjct: 242 AKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDD 301
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+V+DE L+ HFS CGTITSAK+MRD+KGI+KGFGFVCFS+PEEA+KAVN+FHG+M H KP
Sbjct: 302 NVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKP 361
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGL 423
LYV++AQRKEDRQA LQLQYAQ +AG+ G S ++P GYP YYT G+VS PPR GL
Sbjct: 362 LYVSLAQRKEDRQAQLQLQYAQQIAGLAGPSTAIVPGGYPPFYYTA-TGVVSHAPPRAGL 420
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPV----NPKHNRQNRGRMNGNMLPQVGAH-- 477
+YQP+ LR GWRANG PP R +FQ SP PV N + +RQNRGRMNG+ + Q H
Sbjct: 421 VYQPMALRPGWRANGSAPPAR-SFQQSPTPVVSNNNTRQHRQNRGRMNGHAVSQGNTHSG 479
Query: 478 -YM---QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP 533
YM QQ+SQSA SS++SS QQ+ GQ+KYVP+GR RE+ KGSG+S + P
Sbjct: 480 TYMPQAQQASQSAISSRESSTQQRTGQAKYVPSGRHREMEKGSGLSSSG------GSLGP 533
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
++L+ MLA +PEQQK+ILGE LY LV+K KP+L AKITGMLLEMDN
Sbjct: 534 EVLHSMLANATPEQQKEILGEHLYMLVQKIKPNLAAKITGMLLEMDN------------- 580
Query: 594 AVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
VEEA QVLK S+AKVS Q+ +H N+LSAEVAVN
Sbjct: 581 ---VEEAFQVLKNSKAKVSGQDVLHSNFLSAEVAVN 613
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/635 (67%), Positives = 512/635 (80%), Gaps = 9/635 (1%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
MAV P A PASLYVGDLHP+V+D L DAFS+F+SLASVRVCKDS+TG+S CYGYVNF
Sbjct: 1 MAVPPSVAAAPASLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNF 60
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
+SP DAIRAIE+KN++ L+GK +R+ WS RDPDARK+ + NLFVKNL ESIDN LQ+MF
Sbjct: 61 VSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMF 120
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
+ +GNI+S KV SEDGKSKG+GFVQFE+EES+N AIE LNG+TVGDK++YVG+F+KKSD
Sbjct: 121 KKYGNILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSD 180
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
R+LP P A+YTNL+MKNLD DV+E L EKFS FGKI SL+IA+D G S+GFGFVN+DN
Sbjct: 181 RILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDN 240
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
PDDA+RA+EAMNGS +GSK+LY ARAQKKAEREQIL HQFEEKRKE+ILKYKGSN+YVKN
Sbjct: 241 PDDAKRAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKN 300
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
IDD V+DEEL+ HFS CG ITSAK+MRD+KGI+KGFGFVCFS+PEEA+KAVNTFHG+M H
Sbjct: 301 IDDHVSDEELRDHFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
KPLYVA+AQRKEDR+A LQLQYAQ +AG+ G S +IP GYP YY G++S VPPR
Sbjct: 361 GKPLYVALAQRKEDRKAQLQLQYAQQVAGLSGPSTAIIPGGYPPYYYAA-TGVISHVPPR 419
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPV---NPKHNRQNRGRMNGNMLPQVGAH 477
GLMYQ L +R GW ANGF P R +FQ SP+P N + +RQNRGR+NGN + Q H
Sbjct: 420 AGLMYQHLPMRPGWGANGFALPAR-SFQQSPVPAVSNNTRQHRQNRGRLNGNPIAQGNTH 478
Query: 478 ---YMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD 534
Y+ Q+ Q + SS QQ+ GQ+KY+P+GR R++ KGSG S NSG +
Sbjct: 479 SVTYLPQAQQISQPVISSSTQQRTGQAKYLPSGRQRDMEKGSGSSSSGSNSGRGSQGS-E 537
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
ML+ MLA +PEQQK+ILGE LY LV K KP L AKITGMLLEMDN ELLLLLESPESL+
Sbjct: 538 MLHSMLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGELLLLLESPESLS 597
Query: 595 VKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
KVEEAVQVLK S+ KVS Q+ +H N+LSAEVAVN
Sbjct: 598 AKVEEAVQVLKNSKTKVSGQDVLHSNFLSAEVAVN 632
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/641 (65%), Positives = 512/641 (79%), Gaps = 16/641 (2%)
Query: 2 AVVPPTA-TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
AV PTA +PASLYVGDLHPDVTDG+LFDAFS FKSLASVR+C+DS+TGRS YGYVNF
Sbjct: 3 AVSQPTAHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNF 62
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
+SP DA AIEV NH+ L+G+ +R+ WS RD DARKSG+ N+FVKNL +SI+++ LQE+F
Sbjct: 63 ISPQDATNAIEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELF 122
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
+ FGN++S KVATS+DGKSKG+GFVQFE+EESANAAIE+LNG TVGDK+IYVG+F++KSD
Sbjct: 123 KKFGNVLSSKVATSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFVRKSD 182
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
RVL +P KYTNL++KNLD ++ EEHL EKFS+FGKI+S++I+RDENG SRGFGF+NF+N
Sbjct: 183 RVLANPDIKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFEN 242
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
DDA+RALE +NGS +GSKV+Y ARAQKK ERE++LR +EEK KE++LKYKGSNVYVKN
Sbjct: 243 SDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKN 302
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
IDDDVTDEEL+ FSQ GTITS+K+MRD+KGINKGFGFVCFS+P+EA +AVNT G M H
Sbjct: 303 IDDDVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFH 362
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
KPLY+AIAQRKEDRQ L+LQ+AQ +AGI G S + G YY PG+V V R
Sbjct: 363 GKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIF-PGGYPPYYYPAPGVVPPVASR 421
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNP---KHNRQNRGRMNGNMLP-QVGA 476
PGLM+QPLG+R GWR N + P RP FQ SPLP+ P + RQNRG+MNG +L Q G
Sbjct: 422 PGLMFQPLGMRPGWRPNTYTSPARPGFQPSPLPIIPTASRQPRQNRGKMNGPILSHQNGV 481
Query: 477 H---YMQQS---SQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSG--VSLGTFNSGGV 528
YMQ S +QS ++K SSNQQ GQ KYVPN R E NK SG + FNS G
Sbjct: 482 QSVSYMQNSQDANQSVVTAKSSSNQQWTGQVKYVPNARSCETNKTSGASAAAAAFNSVGD 541
Query: 529 MARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLE 588
+++ +L+ MLA+ P+QQKQILGE LYPLV+K KPDL AKITGMLLEMDNSELLLLLE
Sbjct: 542 VSQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRKPDLAAKITGMLLEMDNSELLLLLE 601
Query: 589 SPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
SPESLA KVEEAVQVLK+S+ K+S Q+ + ++L AE+AVN
Sbjct: 602 SPESLAAKVEEAVQVLKISKTKLSNQDTL--SFLPAELAVN 640
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/525 (68%), Positives = 423/525 (80%), Gaps = 33/525 (6%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
MAV P PASLYVGDLHPD+TDG LFDAFSEFKSLASVR+C+DS++GRS CYGYVNF
Sbjct: 1 MAVPPTVPAAPASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNF 60
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVK--------------- 105
+SP DA AIE KNHT LHGK++R+ WS RDPDAR+SG+ N+FVK
Sbjct: 61 ISPQDASHAIEAKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKVYLFAVTSIIDAELY 120
Query: 106 -----NLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
NL +SIDNVRLQ MFQ FGNI+SCKV +EDGKSKG+GFVQFE+EE ANAAIE L
Sbjct: 121 FLVCLNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKL 180
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASL 220
NG + K+IY G+F++K+DRVLP+P AKYTNL++KNLD DVTEE L EKF +FGKIASL
Sbjct: 181 NGFIIDGKQIYAGKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASL 240
Query: 221 LIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
+I++DENG SRGFGFVNF++P+DA+RALEA+NG +GSKVLY ARAQKKAEREQ+LR QF
Sbjct: 241 VISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQF 300
Query: 281 EEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVC 340
EEKR E+ILKY+GSNVYVKNIDD+V D++L+ HFS CG ITSAK+MRD+KGI+KGFGFVC
Sbjct: 301 EEKRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVC 360
Query: 341 FSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPS 400
FS+P+EASKAVNTFHGYM HRKPLYVAIAQRKEDRQA LQL YAQ MAG+ G S VIP
Sbjct: 361 FSTPDEASKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQRMAGLAGPSTPVIPG 420
Query: 401 GYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPV---NPK 457
GYP LYYT PPG+ +PPR GLMYQPLGLRTGWRAN +PPTRPAFQ SP+P+ P+
Sbjct: 421 GYPPLYYTAPPGV---IPPRQGLMYQPLGLRTGWRANNLIPPTRPAFQPSPIPLMPNTPR 477
Query: 458 HNRQNRGRMNGNMLPQVGAH------YMQQSSQSAASSKDSSNQQ 496
+RQNRGR NG+ +PQ G H ++QQ +Q S KDS NQQ
Sbjct: 478 QHRQNRGRTNGH-IPQGGGHSTAFMPHLQQPTQPVISPKDSINQQ 521
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/492 (63%), Positives = 384/492 (78%), Gaps = 11/492 (2%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
MAV A PASLYVGDLH +V D LF+AF+EFK++ SVRVC+D T +S CYGYVNF
Sbjct: 1 MAVPATVAAVPASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNF 60
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
S DAIRA+++KN++ L+GK++R+ WS DP ARKSG N+FVKNL SIDN L ++F
Sbjct: 61 KSQQDAIRAMKLKNNSYLNGKVIRVMWSHPDPSARKSGRGNVFVKNLAGSIDNAGLHDLF 120
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
Q +GNI+S KV S DGKSKG+GFVQFE+EESAN AIE LNG+TVGDK+IYVG+F++K D
Sbjct: 121 QKYGNILSSKVVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFVRKGD 180
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
R+LP AKYTNL++KNLDSD+TE L EKFS FGKI SL+I++D+NG S+GF FVN++N
Sbjct: 181 RILPGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYEN 240
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
PDDAR+A+EAMNG GSK LY ARAQKKAEREQIL QFEEKRKE+ILKY+ SN+YVKN
Sbjct: 241 PDDARKAMEAMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKN 300
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
IDDDVTD+EL+ FS CGTITS KVMRD+KGI+KGFGFVCFS+PEEA+KAV +F+G M H
Sbjct: 301 IDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFH 360
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
RKPLY+AIAQRK DR+ L L YA G++GSS VIP G+P +Y + + SQ+ +
Sbjct: 361 RKPLYIAIAQRKMDRKTQLNLHYAPQQTGLDGSSTPVIPGGFPPYFYHS---VASQM-FQ 416
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNP---KHNRQNRGRMNGNMLPQVGAH 477
GL+YQPLGLR+GWRAN VPPTR +FQ S LP P +H+RQNR RMNGN+ AH
Sbjct: 417 SGLLYQPLGLRSGWRANDSVPPTR-SFQQSHLPQVPNFTRHHRQNRSRMNGNVNSLGKAH 475
Query: 478 ---YMQQSSQSA 486
Y+ Q Q+
Sbjct: 476 SGVYIPQYYQAV 487
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 313/502 (62%), Positives = 383/502 (76%), Gaps = 22/502 (4%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
MAV A PAS+YVGDLHPDV + LF AF EF S+ASVRVC+D T S CYGYVNF
Sbjct: 1 MAVPATVAAVPASIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNF 60
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
S DAIRAI+++N++ L+GK++R+ W RDP+ARKSG N+FVKNL SIDN L ++F
Sbjct: 61 RSQQDAIRAIKLRNNSYLNGKVIRVMWLHRDPNARKSGRGNVFVKNLAGSIDNAGLHDLF 120
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
+ +GNI+S KV SEDGKSKG+GFVQFE EESAN AIE LNG+TVG+K+IYVG+F++K D
Sbjct: 121 KKYGNILSSKVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFVRKGD 180
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
R+LP AKYTNL++KNLDSD+TE L EKFS FGKI SL I++D+NG S+GF FVN++N
Sbjct: 181 RILPGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYEN 240
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
PDDA++A+EAMNG GSK LY ARAQKKAEREQIL QFEEKRKE+ILKY+ SN+YVKN
Sbjct: 241 PDDAKKAMEAMNGLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKN 300
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
IDDDVTD+EL+ FS CGTITS KVMRD+KGI+KGFGFVCFS+PEEA+KAV +F+G H
Sbjct: 301 IDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFH 360
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
RKPLY+AIAQRK++R+ L L YA AG++GSS VIP G P +Y + ++ Q
Sbjct: 361 RKPLYIAIAQRKKERKTQLNLHYAPQQAGLDGSSTPVIPGGVPPYFYHSVASLMFQ---- 416
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNP---KHNRQNRG-RMNGNM------ 470
GL+YQPLGLR+GWRAN FVPP R +FQ S +P+ P +H RQNRG RMNGN+
Sbjct: 417 SGLLYQPLGLRSGWRANDFVPPAR-SFQHSQVPIVPNFTRHQRQNRGSRMNGNLNSLGKA 475
Query: 471 -----LPQVGAHYMQQSSQSAA 487
+PQ+ Y Q SAA
Sbjct: 476 YSSVYIPQL--QYYQAVEYSAA 495
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 343/620 (55%), Positives = 433/620 (69%), Gaps = 43/620 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP VT+G L+DAF+EFKSL SVR+CKD+++GRS CYGY NFLS DA AIE
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
KN++ L+GKM+R+ WS R PDAR++GV N+FVKNL ES+ N LQ+MF+ FGNI+SCKV
Sbjct: 84 KKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKV 143
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT EDGKS+G+GFVQFE E++A+AAI+ LN T V DK IYVG+F+KK+DRV P KYT
Sbjct: 144 ATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRV--KPEEKYT 201
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL+MKNLD+DV+E+ L EKF++FGKI SL IA+DEN RG+ FVNFDNP+DARRA E +
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG+ GSK LY RAQKKAEREQ+LR QF+EK +E+ + K SN+YVKN++ VT+EEL+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
HFSQCGTITS K+M DEKG +KGFGFVCFS+PEEA AV TFHG M H KPLYVAIAQ+
Sbjct: 322 KHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQK 381
Query: 372 KEDRQAHLQLQYAQHM-AGIEGSSANVIPSGYPSLYYT-TPPGIVSQVPPRPGLMYQPLG 429
KEDR+ LQ+Q+ + A SSA+V P Y LYYT T PG+V Q P LM++
Sbjct: 382 KEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTHPGMVYQSYP---LMWKSAN 438
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVN-PKHNRQNR-GRMNGNMLPQVGAHYMQQSSQSAA 487
+ G P A P+ N P NRQNR G+++ N + V Y QS+Q
Sbjct: 439 MI------GSSYPNSEAVTYPPMVANAPSKNRQNRIGKLDRNAVSYVPNVY--QSTQMLP 490
Query: 488 SSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQ 547
S+D S QQ GR +E+ K + R+ + + GM
Sbjct: 491 LSRDFSKQQHSRTY-----GRGKEMKK------------SIQQRQSETV-GM-------- 524
Query: 548 QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLS 607
+ Q+LGE L+PLVEK +P L KITGMLLEMD SELLLLL+SPE LAV+V+EA +VLK S
Sbjct: 525 EMQLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSS 584
Query: 608 EAKVSTQEAIHPNYLSAEVA 627
+ ++ +YL++ +A
Sbjct: 585 KTNLTAPNTHRSDYLASGIA 604
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 343/624 (54%), Positives = 431/624 (69%), Gaps = 51/624 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP VT+G L+DAF+EFKSL SVR+CKD++TGRS CYGY NFLS DA AIE
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLAIE 83
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
KNH+ L+GKM+R+ WS R+PDAR++GV N+FVKNL ESI N LQ+MF+ FGNI+SCKV
Sbjct: 84 KKNHSLLNGKMIRVMWSVREPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSCKV 143
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT EDGKS+G+GFVQFE E++A+AAIE LN TTV K IYVG+F+KK+DR KYT
Sbjct: 144 ATFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDRA--KAEEKYT 201
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N++MKNLD+DV E+ L EKFS+FGKI SL IA+DENG +G+ FVNFD P+DAR A E M
Sbjct: 202 NVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDARWAAETM 261
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG+ GSK LY RAQKKAEREQ+LR QF+EK +E+++K K SN+YVKNI+ VT+EEL+
Sbjct: 262 NGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVSNIYVKNINVGVTEEELR 321
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
HFSQCGTITS K+M DEKG +KGFGFVCFS+PEEA AV TFHG M H KPLYVA AQ+
Sbjct: 322 KHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGKMFHGKPLYVATAQK 381
Query: 372 KEDRQAHLQLQYAQHM-AGIEGSSANVIPSGYPSLYYT-TPPGIVSQ-VPPRPGLMYQPL 428
KEDR+ LQ+Q+ + G SSA+ IP Y LYYT T PG+V Q PP
Sbjct: 382 KEDRKMQLQVQFGNCVEGGGSSSSASFIPGTYAPLYYTNTHPGMVYQSYPPT-------- 433
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPV----NPKHNRQNR-GRMNGNMLPQVGAHYMQQSS 483
W++ + + P Q P P+ +QNR G+++ N + V Y QS+
Sbjct: 434 -----WKSANMISSSYPNSQALTYPSVVGNAPRKIKQNRKGKLDRNAVSYVPNVY--QST 486
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAP 543
Q S+D SNQQ LN+ T+ G M +KP +
Sbjct: 487 QMLPLSRDFSNQQ---------------LNR-------TYGRGKEM-KKPIQ---QRQSE 520
Query: 544 SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
+ +KQ+LGE LYPLVEK +P L KITGMLLEMD SELLLLL+SP+ LAV+VEEA +V
Sbjct: 521 TIVMEKQLLGELLYPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPQELAVRVEEAFEV 580
Query: 604 LKLSEAKVSTQEAIHPNYLSAEVA 627
LK ++ V+ + ++L++ +A
Sbjct: 581 LKSAKTNVTGPNTLRSDFLASGIA 604
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 308/619 (49%), Positives = 421/619 (68%), Gaps = 13/619 (2%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVGDLH DV + LFDAFS+ ++ SVRVC+D+ T RS YGYVN+ S DA+ A++
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
NH+ + K +R+ WS RDPDAR+SGV N+FVKNL S+DN LQE+F FG+++SCKVA
Sbjct: 104 NHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVAK 163
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNL 193
+EDG S+G+GFVQF ++ESA+ AI NLNG+ D++++V FIKKS+R + K+TNL
Sbjct: 164 NEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFIKKSERS-ANNDDKFTNL 222
Query: 194 FMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG 253
+MK+LD D+TEE + KFS+FG I S+ I R +G+S GFGFV+F NP+ A +A E M+G
Sbjct: 223 YMKHLDDDITEELVKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHG 282
Query: 254 SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAH 313
++GSK LY ARAQKK ER+Q L+ EEKR E I K SNVY+KNI D+V D+ L+A
Sbjct: 283 MLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIITKSNESNVYIKNIHDEVDDDALRAR 342
Query: 314 FSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373
F++ G ITSAKVMRD+KGI++GFGFVC+S+PEEA VN+ G M KPLYVAI QRKE
Sbjct: 343 FAEYGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFFGKPLYVAIFQRKE 402
Query: 374 DRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTG 433
+R+A LQ +AQ +A + G + ++IP+GYP +Y+ P + Q PPR G +Y P+GL
Sbjct: 403 ERRAKLQQHFAQ-LARMVGPTNSMIPTGYPQVYFAHPNAHIPQGPPRHGFVYPPMGLSHE 461
Query: 434 WRANGF-VPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKD- 491
WR N F P P +P +P+H R NRGRM GNM+P A + A +K+
Sbjct: 462 WRPNMFPSAPNLPQIHSPMMPNSPRHYRSNRGRMGGNMMPLPHAVHAMNYVTHAQPTKEF 521
Query: 492 -SSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQ 550
S +Q+ SKY N + +G+++ + M D + LA+ P +QK
Sbjct: 522 MSMPRQRFNHSKYFSNDVM-----ANGLAIHQSDPVSTMN---DSFSSYLASAPPAEQKN 573
Query: 551 ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+LG RLYPLVE+H+P+L +KITGMLLE+DNSE++ LL S E L+VKV+E VQ+L+ ++ K
Sbjct: 574 LLGNRLYPLVERHQPELASKITGMLLELDNSEVVTLLCSSEMLSVKVDECVQLLQATKPK 633
Query: 611 VSTQEAIHPNYLSAEVAVN 629
EA+HP ++ +VN
Sbjct: 634 TEDHEALHPGFMMESPSVN 652
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 312/626 (49%), Positives = 432/626 (69%), Gaps = 19/626 (3%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
AT PA LYVGDLH V + L + F + +L SVRVC+D+ T S YGYVN+LS DA
Sbjct: 35 ATVPA-LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAA 93
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
A+E NH+ + K +R+ WS RDPDAR+SGV N+FVKNL + +DNV LQE+F FG+I+
Sbjct: 94 IALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDIL 153
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
SCKVA +EDG S+G+GFVQF +ESA+A+I+NLN + ++++V FIKKS+R +
Sbjct: 154 SCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDD 213
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
KYTNL+MKNLD D+TEE + KFS++G + S+ I + ++GTS+GFGFV+F NP+ A+RA
Sbjct: 214 -KYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRA 272
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
E+MNG ++GSK LY ARAQKKAER+Q L+ EEKR E I K GSNVY+KNI+D+V D
Sbjct: 273 KESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGD 332
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
+ L+ F++ G ITSAK+MRDEKGI+KGFGFVC+++PEEA AV+ G M + KPLYVA
Sbjct: 333 DALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVA 392
Query: 368 IAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQP 427
IAQRKE+R+A L+ ++A+ +A + G+++ VIP+GYP Y+ P + Q P R G MY P
Sbjct: 393 IAQRKEERRAKLEQRFAE-LATMVGATSPVIPTGYPQFYFAHPSTHLPQSPGRQGFMYPP 451
Query: 428 LGLRTGWRANGFVPPTRPAFQV-SPLPVN-PKHNRQNRGRMNGNMLPQVGAHYMQQSSQS 485
+G+ WR N F P + Q+ SP+ N P+ R NRGRMNGNM+ H+
Sbjct: 452 IGISQEWRHNMF-PSSHNIQQIHSPIMRNTPRQYRNNRGRMNGNMM---HFHHTVNYVPH 507
Query: 486 AASSKD--SSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAP 543
A +K+ S ++Q+ +KY+PN + +G+++ + G ++ D N +LA
Sbjct: 508 AQPAKEFMSMSRQRFSHAKYIPNDIM-----ANGLAI---HHGDSISSMNDAFNNLLATA 559
Query: 544 SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
PE+QK +LG RLYPLVE+H PDL +KITGMLLE+ NSE+++LL S L+ K+EE V++
Sbjct: 560 PPEEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKL 619
Query: 604 LKLSEAKVSTQEAIHPNYLSAEVAVN 629
L+ + K QEA+HP +L VN
Sbjct: 620 LQEVKPKPEDQEALHPGFLLDSAGVN 645
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +++Y+ +++ +V D L + F+EF ++ S ++ +D G S +G+V + +P +A
Sbjct: 314 TKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDE-KGISKGFGFVCYNTPEEA 372
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDAR 95
A+ +GK L ++ + R + R
Sbjct: 373 KCAVSNMRGVMFYGKPLYVAIAQRKEERR 401
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 324/615 (52%), Positives = 420/615 (68%), Gaps = 25/615 (4%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL V + +LF FS+ + SVRVC+D+ T RS YGYVN+ S DA+RA+E
Sbjct: 39 SLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEA 98
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+T ++GK +RI WS RDP RKSGV N+F+KNL ESIDN L + F FG I+SCK+A
Sbjct: 99 LNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIA 158
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
+DG+SKG+GFV FET+E+AN AIE +NG + K+++V +F+K+SDR+ + K+TN
Sbjct: 159 -HQDGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTN 217
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNLD ++ EE + E FS FG I +++I +DEN S+GFGFVNFD+P+ AR A+E MN
Sbjct: 218 VFVKNLDPEMAEEEIKEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMN 277
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
S +GS+ +Y RAQKKAEREQILR QFEEKR E+ KY+G+N+YVKN+DD + DE LK
Sbjct: 278 NSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQ 337
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS+ G ITSAKVMRDEKGI+KGFGFVCF+SPEEAS+A +G M++ KP+YVA+AQRK
Sbjct: 338 EFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRK 397
Query: 373 EDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRT 432
E RQA LQ QYAQ M+G+ + + YP +YY PP ++ QVP R GLMYQP+ +R
Sbjct: 398 EIRQAQLQQQYAQRMSGLMPPPGAQVAAAYPPVYYAAPPALLPQVPQRQGLMYQPV-MRP 456
Query: 433 GWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQ---------QSS 483
GWR PP RP+ Q PLP R + P G Q Q+
Sbjct: 457 GWRTGPLAPPGRPSLQ--PLPPYALVPNAQRQQRQVRNRPPGGQPLAQIPQLQIPQPQAI 514
Query: 484 QSAASSKDSSNQQKGGQS--KYVPNGRIRELNKGSGVSL---GTFNSGGVMARKPDMLNG 538
Q ++ NQQ+ + KYV NGR R+ G L G GG D+L+
Sbjct: 515 QPGGYKENGRNQQQRPRQAMKYVNNGRPRDGAAAGGPVLMVPGNMPMGGN-----DVLS- 568
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
M++A SP+QQKQ+LGERL+PLV H+ DL KITGMLLEMDNSELL+LLE+PE+LA KV+
Sbjct: 569 MMSAASPQQQKQLLGERLFPLVRTHQFDLAGKITGMLLEMDNSELLVLLETPEALASKVD 628
Query: 599 EAVQVLKLSEAKVST 613
EAVQVL+ +K ST
Sbjct: 629 EAVQVLQ-QHSKAST 642
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 312/626 (49%), Positives = 432/626 (69%), Gaps = 19/626 (3%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
AT PA LYVGDLH V + L + F + +L SVRVC+D+ T S YGYVN+LS DA
Sbjct: 35 ATVPA-LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAA 93
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
A+E NH+ + K +R+ WS RDPDAR+SGV N+FVKNL + +DNV LQE+F FG+I+
Sbjct: 94 IALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDIL 153
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
SCKVA +EDG S+G+GFVQF +ESA+A+I+NLN + ++++V FIKKS+R +
Sbjct: 154 SCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDD 213
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
KYTNL+MKNLD D+TEE + KFS++G + S+ I + ++GTS+GFGFV+F NP+ A+RA
Sbjct: 214 -KYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRA 272
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
E+MNG ++GSK LY ARAQKKAER+Q L+ EEKR E I K GSNVY+KNI+D+V D
Sbjct: 273 KESMNGMLLGSKTLYVARAQKKAERKQYLQCLHEEKRNEIITKSNGSNVYIKNINDEVGD 332
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
+ L+ F++ G ITSAK+MRDEKGI+KGFGFVC+++PEEA AV+ G M + KPLYVA
Sbjct: 333 DALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVA 392
Query: 368 IAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQP 427
IAQRKE+R+A L+ ++A+ +A + G+++ VIP+GYP Y+ P + Q P R G MY P
Sbjct: 393 IAQRKEERRAKLEQRFAE-LATMVGATSPVIPTGYPQFYFAHPSTHLPQSPGRQGFMYPP 451
Query: 428 LGLRTGWRANGFVPPTRPAFQV-SPLPVN-PKHNRQNRGRMNGNMLPQVGAHYMQQSSQS 485
+G+ WR N F P + Q+ SP+ N P+ R NRGRMNGNM+ H+
Sbjct: 452 IGISQEWRHNMF-PSSHNIQQIHSPIMRNTPRQYRNNRGRMNGNMM---HFHHTVNYVPH 507
Query: 486 AASSKD--SSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAP 543
A +K+ S ++Q+ +KY+PN + +G+++ + G ++ D N +LA
Sbjct: 508 AQPAKEFMSMSRQRFSHAKYIPNDVM-----ANGLAI---HHGDSISSLNDAFNNLLATA 559
Query: 544 SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
PE+QK +LG RLYPLVE+H PDL +KITGMLLE+ NSE+++LL S L+ K+EE V++
Sbjct: 560 PPEEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKL 619
Query: 604 LKLSEAKVSTQEAIHPNYLSAEVAVN 629
L+ + K QEA+HP +L VN
Sbjct: 620 LQEVKPKPEDQEALHPGFLLDSAGVN 645
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +++Y+ +++ +V D L + F+EF ++ S ++ +D G S +G+V + +P +A
Sbjct: 314 TKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDE-KGISKGFGFVCYNTPEEA 372
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDAR 95
A+ +GK L ++ + R + R
Sbjct: 373 KCAVSNMRGVMFYGKPLYVAIAQRKEERR 401
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 321/604 (53%), Positives = 418/604 (69%), Gaps = 31/604 (5%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL V + +LF FS+ + SVRVC+D+ T RS YGYVN+ S DA+RA+E
Sbjct: 38 SLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEA 97
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+T ++GK +RI WS RDP RKSGV N+F+KNL ESIDN L + F FG I+SCK+A
Sbjct: 98 LNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIA 157
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
+DG+SKG+GFV FET+E+AN AIE +NG + K+++V +F+K+SDR+ + K+TN
Sbjct: 158 -HQDGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFTN 216
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNLD ++ EE + E FS FG I +++I +DEN S+GFGFVNFD+P+ AR A+E MN
Sbjct: 217 VFVKNLDPEMAEEEINEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMN 276
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
S +GS+ +Y RAQKKAEREQILR QFEEKR E+ KY+G+N+YVKN+DD + DE LK
Sbjct: 277 NSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQ 336
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS+ G ITSAKVMRDEKGI+KGFGFVCF+SPEEAS+A +G M++ KP+YVA+AQRK
Sbjct: 337 EFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRK 396
Query: 373 EDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRT 432
E RQA LQ QYAQ M+G+ + + YP +YY PP ++ QVP R GLMYQP+ +R
Sbjct: 397 EIRQAQLQQQYAQRMSGLMPPPGAQVAAAYPPVYYAAPPALLPQVPQRQGLMYQPV-MRP 455
Query: 433 GWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDS 492
GWR PP RP+ Q PLP P +N+ + ++ + MQQ + A
Sbjct: 456 GWRTGPLAPPGRPSLQ--PLP--PYALVRNKKGVPLSISSYI-VGVMQQRPRQAM----- 505
Query: 493 SNQQKGGQSKYVPNGRIRELNKGSGVSL---GTFNSGGVMARKPDMLNGMLAAPSPEQQK 549
KYV NGR R+ G L G GG D+L+ M++A SP+QQK
Sbjct: 506 ---------KYVNNGRPRDGAAAGGPVLMVPGNMPMGG-----NDVLS-MMSAASPQQQK 550
Query: 550 QILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEA 609
Q+LGERL+PLV H+ DL KITGMLLEMDNSELL+LLE+PE+LA KV+EAVQVL+ +
Sbjct: 551 QLLGERLFPLVRTHQFDLAGKITGMLLEMDNSELLVLLETPEALASKVDEAVQVLQ-QHS 609
Query: 610 KVST 613
K ST
Sbjct: 610 KAST 613
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 311/628 (49%), Positives = 429/628 (68%), Gaps = 20/628 (3%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
AT PA LYVGDLH D + LFDAFS+ ++ SVRVC+D+ T S YGYVN+ S DA+
Sbjct: 99 ATVPA-LYVGDLHEDAQEEHLFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFSQADAM 157
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
A+E NH+ + K +R+ WS RDPDAR+SGV N+FVKNL + IDNV LQE+F FG+I+
Sbjct: 158 TALEKMNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDHIDNVILQELFSKFGDIL 217
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
SCKVA ++DG S+G+GFVQF +ESA+ AIENLN + ++++V FIKKS+R +
Sbjct: 218 SCKVARNDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQLHVAHFIKKSERS-ANND 276
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
KYTNL+MKNLD D+TEE + KFS+FG + S+ I + ++GTS+GFGFV+F +PD A++A
Sbjct: 277 DKYTNLYMKNLDDDMTEELIKLKFSQFGPLISVKIMKRDDGTSKGFGFVSFKSPDSAKKA 336
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
EAMNG +GSK LY ARAQKKAER+Q L+ EEKR E + K GSNVY+KNI D V D
Sbjct: 337 KEAMNGIPLGSKSLYVARAQKKAERKQYLQLLHEEKRNEILTKSNGSNVYIKNISDRVDD 396
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E L+ F + G ITS K+MRD+KGI+KGFGFVC+++P+EA AV++ G M + KPLYVA
Sbjct: 397 ETLRERFDEFGNITSVKIMRDDKGISKGFGFVCYNTPDEAKCAVSSMRGVMFYDKPLYVA 456
Query: 368 IAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQP 427
IAQRKEDR+A L+ ++A+ +A + G+++ VIP+GYP +Y+ P Q P R G MY P
Sbjct: 457 IAQRKEDRKARLEQRFAE-LATMVGAASPVIPTGYPHVYFAHPSTHFPQGPSRQGFMYPP 515
Query: 428 LGLRTGWRANGFVPPTRPAFQVSPL-PVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSA 486
+GL WR N F P +PL P P+ R NRGRM GNM+ H + S A
Sbjct: 516 MGLGQEWRQNVFPSPHNIQQIHAPLMPNTPRQYRNNRGRMTGNMM--TFPHTVNYVSH-A 572
Query: 487 ASSKD--SSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPS 544
++KD S ++Q+ G +KY+P + SG+++ + ++ D +LAA
Sbjct: 573 QTAKDFMSMSRQQFGHAKYIPADVMT-----SGLAI---HHSDPVSSVNDPFTSLLAAAP 624
Query: 545 PEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
P+QQ+ +LG RLYPLVE++ P+L +KITGMLL++D+S+++LL+ SP+ L+ K+ E Q+L
Sbjct: 625 PDQQRNMLGNRLYPLVERYHPELASKITGMLLDLDSSDVVLLICSPDMLSAKINECAQLL 684
Query: 605 KLSEA---KVSTQEAIHPNYLSAEVAVN 629
+ +A K QEA+HP +L VN
Sbjct: 685 QGQQAAKTKPEDQEALHPGFLLDSAGVN 712
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 302/612 (49%), Positives = 411/612 (67%), Gaps = 13/612 (2%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVGDLH DV + LF+AFS+ ++ SVRVC+D+ T RS YGYVN+ S DA+ A++
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
NH+ + K +R+ WS RDPDAR+SGV N+FVKNL S+DN LQE+F FG+++SCKVA
Sbjct: 183 NHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLSSSVDNASLQELFSKFGDVLSCKVAK 242
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNL 193
+EDG S+G+GFVQF ++ESA+ AI NLNG+ D++++V FIKKS+R + K+TNL
Sbjct: 243 NEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFIKKSERSANN-DDKFTNL 301
Query: 194 FMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG 253
+MK+LD D+TEE + KFS+FG I S+ I + +G+S GFGFV+F NP+ A +A MNG
Sbjct: 302 YMKHLDDDITEELVKLKFSQFGSIVSVKIMKRPDGSSLGFGFVSFQNPESAIKAQSTMNG 361
Query: 254 SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAH 313
++GSK LY ARAQKK ER+Q L+ EEKR E + + SNVY+KNI D+V D+ L+A
Sbjct: 362 MLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIMTRCNESNVYIKNIHDEVDDDALRAR 421
Query: 314 FSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373
F + G ITSAKVMRD+KGI++GFGFVC+S+PEEA AVN G M KPLYVAI QRKE
Sbjct: 422 FVEFGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSAVNNMRGVMFFGKPLYVAIFQRKE 481
Query: 374 DRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTG 433
+R+A LQ +AQ +A + G + ++IP+GYP +Y+ P + Q PPR G +Y P+GL
Sbjct: 482 ERKAKLQQHFAQ-LARMVGPANSMIPTGYPQVYFAHPSTHIPQGPPRHGFVYPPMGLSHE 540
Query: 434 WRANGFVP-PTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKD- 491
WR + F P P +P +P+H R NRGRM GNM+P A + +K+
Sbjct: 541 WRPSMFPPAPNLQQIHSPVMPNSPRHYRSNRGRMGGNMMPLPHAVHTMNYMTHPQPAKEF 600
Query: 492 -SSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQ 550
S +Q+ KY N + SL S V D + LA+ P +QK
Sbjct: 601 MSLPRQRFNHPKYFSNDVMAN-------SLAIHQSDPVSTMN-DSFSNYLASAPPAEQKN 652
Query: 551 ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+LG RLYPLVE+H+P+L +KITGMLLE+DNSE++ LL S E L+VKV+E VQ+L+ ++ K
Sbjct: 653 LLGNRLYPLVERHQPELASKITGMLLELDNSEVVTLLCSSEMLSVKVDECVQLLQATKPK 712
Query: 611 VSTQEAIHPNYL 622
EA+HP ++
Sbjct: 713 AEDHEALHPGFM 724
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/639 (44%), Positives = 391/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 281/636 (44%), Positives = 390/636 (61%), Gaps = 48/636 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AI+ +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F K+G S+ + D+NG S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 DMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIP-SGYPSLYYTT------------PPGIVSQ 416
QRKE+RQAHL QY Q MA + + + P PS Y+ PPG ++Q
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQ 428
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ---NRGRMNGNMLP 472
+ P P W A G RP FQ P + P R + R N +P
Sbjct: 429 LRPSP-----------RWTAQG----ARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVP 473
Query: 473 QV--GAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVSLGT 522
+V S+Q+ ++ + VP + + LN V++
Sbjct: 474 RVVSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQ 533
Query: 523 FNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSE 582
+ V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSE
Sbjct: 534 -PAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSE 591
Query: 583 LLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
LL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 592 LLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 627
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM D+
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G ++ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQ 282
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/639 (44%), Positives = 391/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/639 (44%), Positives = 391/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQ 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/639 (44%), Positives = 390/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F KFG S+ + DE G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 GGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/630 (45%), Positives = 383/630 (60%), Gaps = 57/630 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP KSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVM 529
+P+V S+Q A ++S Q G P V T V
Sbjct: 472 QVPRV------MSTQRVA---NTSTQTMG------PRPAAAAAAATPAVRTVTMQQPAVH 516
Query: 530 ARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLE 588
+ + L MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE
Sbjct: 517 VQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLE 576
Query: 589 SPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
SPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 577 SPESLRSKVDEAVAVLQAHQAKEAAQKAVN 606
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/639 (44%), Positives = 390/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PAS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R G M
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPSAIRPAAPRPPFGTMRPAST 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/497 (52%), Positives = 326/497 (65%), Gaps = 76/497 (15%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
A+ A+LYVGDLH DVTD +L+ AFSEF +L S RVCKDS TG+S CYGYVN S +AI
Sbjct: 11 ASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAI 70
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
RAIE+KNH+ L+GK++R+ W RD DARKSG N+FVKNL SIDNV L ++FQ +GNI+
Sbjct: 71 RAIELKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNIL 130
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
S K+A SEDGKSKG G++QF++EESAN AI+ +NG+TV DK+IYVG+FI+KS+R LP
Sbjct: 131 SSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLD 190
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
AK+TNL++KNLD VTE+HL EKFS FGKI SL I +DENG S+GFGFVN+D+PDDARRA
Sbjct: 191 AKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRA 250
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
+EAM+GS GSK+LY ARAQKK EREQIL H F EK LK+ GSN+YVKNID V D
Sbjct: 251 MEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKG----LKHMGSNIYVKNIDTSVGD 306
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML-------- 359
EEL+ HFS CG + SAKVMRD+KG +KGFGFVCFS+ EA K+++ F+G +
Sbjct: 307 EELRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGELSCFESVSHQ 366
Query: 360 -----------------------------HRKPLYVAIA--------------------- 369
H P+ +A A
Sbjct: 367 GNRLERFGPVSFFAWICISSTMKFEKNAHHDVPIILAYASIKLMLYATGCMFHGKPLYVD 426
Query: 370 --QRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQ 426
Q+KEDR+ LQ +A + G+ G SS VIP P PP I G++Y
Sbjct: 427 FAQKKEDRKRLLQHMHAPKLEGLAGHSSTAVIPGARP------PPFIYRT----SGVVYH 476
Query: 427 PLGLRTGWRANGFVPPT 443
P L +GW ANGF P+
Sbjct: 477 P-PLGSGWSANGFASPS 492
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 97/197 (49%), Gaps = 20/197 (10%)
Query: 180 DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNF 238
D V SPAA L++ +L SDVT+ L + FS+F + S + +D G S +G+VN
Sbjct: 7 DAVPASPAA---TLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNL 63
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
+ +A RA+E N S + KV+ + A+ K NV+V
Sbjct: 64 SSHQEAIRAIELKNHSSLNGKVIRVMWLSRDADAR----------------KSGKGNVFV 107
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM 358
KN+ + + L F + G I S+K+ R E G +KGFG++ F S E A+ A+ +G
Sbjct: 108 KNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGST 167
Query: 359 LHRKPLYVAIAQRKEDR 375
+ K +YV RK +R
Sbjct: 168 VRDKQIYVGKFIRKSER 184
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 282 EKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVC 340
+ K+ + + +YV ++ DVTD +L FS+ T+ SA+V +D G + +G+V
Sbjct: 3 DSEKDAVPASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVN 62
Query: 341 FSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED 374
SS +EA +A+ + L+ K + V R D
Sbjct: 63 LSSHQEAIRAIELKNHSSLNGKVIRVMWLSRDAD 96
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 285/640 (44%), Positives = 389/640 (60%), Gaps = 55/640 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGINDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQV- 530
Query: 520 LGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEM 578
T V A+ + L MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+
Sbjct: 531 --TMQQPAVHAQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEI 588
Query: 579 DNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 589 DNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/639 (44%), Positives = 392/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P+L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPNLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/639 (44%), Positives = 391/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/639 (44%), Positives = 391/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AI+ +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/639 (44%), Positives = 391/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 288/639 (45%), Positives = 395/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PTS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QLAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQS------AASSKDSSNQQKGGQSKYVPNGR--IRELNKGSGVS 519
+P+V + S+Q+ AA++ + + G Q KY R + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTGPQYKYAAGVRNPQQHLNTQPQVA 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/635 (44%), Positives = 377/635 (59%), Gaps = 64/635 (10%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL P+VTD +L+D F++ + SVRVC+D T+ RS YGYVNF +P DA RA++V
Sbjct: 32 SLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDV 91
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T L+ + +RI +S RDP RKSG N+F+KNL +ID+ L + F FGNI+SCKVA
Sbjct: 92 LNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVA 151
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQF+ EESA AIE LNG + DK++YVG F++K +R + AK+ N
Sbjct: 152 TDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAADKAKFNN 211
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL T++ L F +FG I S ++ RD +G S+ FGFVNF+N DDA RA+EA+N
Sbjct: 212 VFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALN 271
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y +AQKK+ERE L+ +FE+ KE KY+G+N+YVKN+DD + DE+LK
Sbjct: 272 GKNFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKE 331
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS GTITS KVMRD G+++G GFV FS+PEEAS+A+ +G M+ KPLYV +AQRK
Sbjct: 332 LFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRK 391
Query: 373 EDRQAHLQLQYAQH----MAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGL 423
EDR+A LQ Q+AQ M G + P G P + Y PP I +P +PG
Sbjct: 392 EDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQLFYSQGPPAI---IPSQPGF 448
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
YQ +P RP +P+P +P V Q
Sbjct: 449 GYQ----------QQLMPGMRPG--AAPVP--------------NFFVPMVQQGQQGQRP 482
Query: 484 QSAASSKDSSNQQKGGQ--SKYVPNGRIRELNKG--------SGVSLGTF----NSGGVM 529
+QQ + +P GR+ G GV+ G F + GG+
Sbjct: 483 GGRRPGAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGIPDVPIPGVAGGMFSVPYDVGGMP 542
Query: 530 ARKPDM--------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNS 581
R + L LA SPEQQ+ +LGE LYPLVE+ +PD AK+TGMLLEMD +
Sbjct: 543 LRDASISQQIPVGALATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQT 602
Query: 582 ELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEA 616
E+L LLESPE+L KV EA+ VL+ V+ Q+A
Sbjct: 603 EVLHLLESPEALKAKVAEAMDVLR----NVAQQQA 633
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 23/191 (12%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +VT+ L + F++ G++ S+ + RD + S G+G+VNF NP DA RAL+
Sbjct: 31 TSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALD 90
Query: 250 AMNGSVIGS---KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + + + +++Y+ R I K N+++KN+D +
Sbjct: 91 VLNFTPLNNRPIRIMYS-------------------HRDPSIRKSGQGNIFIKNLDRAID 131
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L FS G I S KV D G +KG+GFV F + E A KA+ +G +L+ K +YV
Sbjct: 132 HKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 191
Query: 367 AIAQRKEDRQA 377
RK++R++
Sbjct: 192 GPFLRKQERES 202
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 282/639 (44%), Positives = 390/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD T+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 157/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 280/639 (43%), Positives = 391/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+R+C+D T RS Y YVN+ P D+ RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 159/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S ++ + +S G+ +V ++
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
+ A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PRDSERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/635 (44%), Positives = 378/635 (59%), Gaps = 64/635 (10%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL P+VTD +L+D F++ + SVRVC+D T+ RS YGYVNF +P DA RA++V
Sbjct: 29 SLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDV 88
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T L+ + +RI +S RDP RKSG N+F+KNL +ID+ L + F FGNI+SCKVA
Sbjct: 89 LNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVA 148
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQF+ EESA AIE LNG + DK++YVG F++K +R + AK+ N
Sbjct: 149 TDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTADKAKFNN 208
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL T++ L F +FG I S ++ RD +G S+ FGFVNF+N DDA RA+EA+N
Sbjct: 209 VFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALN 268
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y +AQKK+ERE L+ +FE+ KE KY+G+N+YVKN+DD + D++LK
Sbjct: 269 GKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSLGDDKLKE 328
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS GTITS KVMRD GI++G GFV FS+P+EAS+A+ +G M+ KPLYV +AQRK
Sbjct: 329 LFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALLEMNGKMVVSKPLYVTLAQRK 388
Query: 373 EDRQAHLQLQYAQH----MAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGL 423
EDR+A LQ Q+AQ M G + P G P + Y PP I +P +PG
Sbjct: 389 EDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFYAQGPPAI---IPSQPGF 445
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
YQ VP RP +P+P +P V Q
Sbjct: 446 GYQ----------QQLVPGMRPG--AAPVP--------------NFFVPMVQQGQQGQRP 479
Query: 484 QSAASSKDSSNQQKGGQ--SKYVPNGRIRELNKG--------SGVSLGTF----NSGGVM 529
+ +QQ + +P GR+ G GV+ G F + GG+
Sbjct: 480 GGRRTGAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGMPDVSMPGVAGGMFSVPYDVGGMP 539
Query: 530 ARKPDM--------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNS 581
R + L LA SPEQQ+ +LGE LYPLVE+ +PD AK+TGMLLEMD +
Sbjct: 540 LRDASISQQIPVGALATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQT 599
Query: 582 ELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEA 616
E+L LLESPE+L KV EA+ VL+ V+ Q+A
Sbjct: 600 EVLHLLESPEALKAKVAEAMDVLR----NVAQQQA 630
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 23/191 (12%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +VT+ L + F++ G++ S+ + RD + S G+G+VNF NP DA RAL+
Sbjct: 28 TSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALD 87
Query: 250 AMNGSVIGS---KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + + + +++Y+ R I K N+++KN+D +
Sbjct: 88 VLNFTPLNNRPIRIMYS-------------------HRDPSIRKSGQGNIFIKNLDRAID 128
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L FS G I S KV D G +KG+GFV F + E A KA+ +G +L+ K +YV
Sbjct: 129 HKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 188
Query: 367 AIAQRKEDRQA 377
RK++R++
Sbjct: 189 GPFLRKQERES 199
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/633 (44%), Positives = 393/633 (62%), Gaps = 45/633 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS ++ S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L + FSK+G S+ + DENG SRGFGFV+F+ +DA+RA++
Sbjct: 190 FTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K++Y RAQKK ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM D G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRAAYY--PTS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRAN--GFVPPTRPAFQ----VSPLPVNPKHNRQNRGRM 466
++Q+ P P Q G+R N G + P+ P Q + P P+ R
Sbjct: 427 QLAQLRPSPRWTTQ--GVRPQHFQNMPGTMRPSAPRPQTFSTMRPASQVPRMMSTQR--- 481
Query: 467 NGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGR--IRELNKGSGVSLGTFN 524
V M +AA++ + + Q KY P+ R + +N V++
Sbjct: 482 -------VATQTMGPRPSTAAAAASAPPVRGVPQYKYAPSVRNPQQHMNTQPQVTMQQ-P 533
Query: 525 SGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELL 584
+ V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL
Sbjct: 534 AVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELL 592
Query: 585 LLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
+LESPESL KV+EAV VL+ +AK + Q+ +
Sbjct: 593 HMLESPESLRSKVDEAVAVLQAHQAKEAAQKTV 625
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 161/296 (54%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ D++LK FS+ G S +VM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGFV F E+A +AV+ +G ++ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQ 282
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 277/615 (45%), Positives = 377/615 (61%), Gaps = 37/615 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA+E
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALE 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 GMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +IE +NG + K++YVGRFI K+ ++ L A
Sbjct: 131 AQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D ++E L E F K+G+I S + E+G+SRGFGFV F++PD A RA
Sbjct: 191 FTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACM 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG ++ K LY RAQKKAER++ L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE-----------GSSANVIPSGYPSLYYTTPPGIVSQV 417
AQRKEDR+AHL QY Q MA + G+ +P+ P+ + P ++Q+
Sbjct: 370 AQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGGTGGYFVPTIPPAQRFYG-PAQMTQI 428
Query: 418 PPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAH 477
P P QP A P +P F+ +P RG + +GA
Sbjct: 429 RPSPRWTAQPAVRPNAQSAASAYPNMQPPFRPAP-----------RGPAQAALRSSMGAR 477
Query: 478 YM--QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM 535
+ QQ +AAS + Q G + Y +R + + ++P +
Sbjct: 478 PITGQQGVATAASIRAPIVPQSGRPAGYKYTSNMRN-------PPAPQPAVHIQGQEP-L 529
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
MLAA ++QKQ+LGERL+PL+++ PDL KITGMLLE+DNSELL +LE ESL
Sbjct: 530 TTTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKA 589
Query: 596 KVEEAVQVLKLSEAK 610
KV+EAV VL+ +AK
Sbjct: 590 KVDEAVAVLQAHQAK 604
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 17/195 (8%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P +L++ +L SD+TE L EKFS G + S+ + RD S G+ +VNF P DA
Sbjct: 6 PNYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RALE MN +I + + +Q R+ LR K NV++KN+D
Sbjct: 66 ERALEGMNFDIIKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDKT 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ + FS G I S KV +DE G +KG+GFV F + E A+K++ +G +L+ K +
Sbjct: 110 IDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 169
Query: 365 YVAIAQRKEDRQAHL 379
YV +++R+ L
Sbjct: 170 YVGRFIPRKEREKEL 184
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 284/642 (44%), Positives = 385/642 (59%), Gaps = 67/642 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LFD FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL SIDN + + F FGNI+SCKV
Sbjct: 71 TMNFDLIRGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E+G SKG+GFV FETEE+AN +IE +NG + K++YVGRFI K+ ++ L A
Sbjct: 131 AQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D++EE L F KFGKI S + ++G S+GFGFV F++P+ A A++
Sbjct: 191 FTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVD 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG ++ K LY RAQKKAER+Q L+ +FE + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ALNGKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGI-------NKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
L+ F+ GTITSAKVM +E +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 311 RLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 370
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIE-----------GSSANVIPSGYPSL--YYT 408
KPLYVA+AQRKEDR+AHL QY Q MA + G S+ +P+ P+ Y+T
Sbjct: 371 KPLYVALAQRKEDRKAHLTSQYMQRMANMRMHQMGHQFMPPGPSSYFVPT-IPTAQRYFT 429
Query: 409 -----TP----PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVS--------- 450
TP P +Q P RPG G + AN + P RP Q
Sbjct: 430 GGTQLTPIRSNPRWAAQTPIRPGAQ----GGTAAYMANSYRPSARPPNQPMAMRNNIGLG 485
Query: 451 --PLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGR 508
P P+ + +GR P G + + AA+ K +SN + Q+
Sbjct: 486 NVPRPITGQQPPNMQGR------PLAGQQVVVATGSRAATFKYTSNMRNPPQA------- 532
Query: 509 IRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLV 568
G+ + + + ++P + MLAA P++QKQ+LGERL+PL+++ DL
Sbjct: 533 -----MGTMPATPVQQAVHIQGQEP-LTATMLAAAQPQEQKQMLGERLFPLIQRMYADLA 586
Query: 569 AKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
KITGMLLE+DN+ELL +LE ESL KVEEAV VL+ +AK
Sbjct: 587 GKITGMLLEIDNTELLHMLEHNESLKNKVEEAVAVLQAHQAK 628
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 17/196 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L SD+TE L +KFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R+ LR K NV++KN+D
Sbjct: 65 AERALDTMNFDLIRGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDR 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ + FS G I S KV +DE G +KG+GFV F + E A+K++ +G +L+ K
Sbjct: 109 SIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKK 168
Query: 364 LYVAIAQRKEDRQAHL 379
+YV +++R+ L
Sbjct: 169 VYVGRFIPRKEREKEL 184
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 290/616 (47%), Positives = 377/616 (61%), Gaps = 43/616 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL SIDN + + F FGNI+SCKV
Sbjct: 71 TMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E+G SKG+GFV FETEE+AN +IE +NG + K++YVGRFI K+ ++ L A
Sbjct: 131 AQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+TEE L F K+GKI S I ++G S+GFGFV F++P+ A A+E
Sbjct: 191 FTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVE 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +I K LY RAQKKAER+Q L+ +FE + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM E +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRKEFSPFGTITSAKVMM-EDNRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE-GSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY-- 425
AQRKEDR+AHL QY Q MA I I G S Y+ P I P P Y
Sbjct: 370 AQRKEDRKAHLTSQYMQRMANIRMHQMGQFIQPGTSSGYFV--PTI-----PAPQRFYGA 422
Query: 426 -QPLGLRTG--WRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQS 482
Q +RT W A P RP Q S P +P +
Sbjct: 423 AQMAQIRTNPRWPAQT---PVRPGAQGSANPY--------------GTIPTTYRAAPRPP 465
Query: 483 SQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVS---LGTFNSGGV-----MARKPD 534
+QSAA + + N + + PN + R L + V+ LG N+ V + +
Sbjct: 466 NQSAA-LRSNINVPRPITGQQPPNIQGRPLASQAVVAPAGLGISNAAPVQQAVHIQGQEP 524
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
+ MLAA P++QKQ+LGERL+PL+++ PDL KITGMLLE+DNSELL +LE ESL
Sbjct: 525 LTATMLAAAPPQEQKQMLGERLFPLIQRMYPDLAGKITGMLLEIDNSELLHMLEHNESLK 584
Query: 595 VKVEEAVQVLKLSEAK 610
KVEEAV VL+ +AK
Sbjct: 585 AKVEEAVAVLQAHQAK 600
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 17/196 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L +D+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R+ LR K NV++KN+D
Sbjct: 65 AERALDTMNFDLIKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDR 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ + FS G I S KV +DE G +KG+GFV F + E A+K++ +G +L+ K
Sbjct: 109 SIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKK 168
Query: 364 LYVAIAQRKEDRQAHL 379
+YV +++R+ L
Sbjct: 169 VYVGRFIPRKEREKEL 184
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 282/639 (44%), Positives = 390/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP KSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 285/629 (45%), Positives = 383/629 (60%), Gaps = 36/629 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+V++ L++ FS + S+RVC+D T RS Y YVNF P DA RA+E
Sbjct: 11 ASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALE 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E G SKG+GFV FET ++A AI+ +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ + L F KFG S+ + DE+GTS+GFGFVNF+ +DA++A+E
Sbjct: 190 FTNVYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERHEDAQKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G NKGFGFVCFSSPEEA+KAV +G ++ KPLY+A+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRNKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGYPSLYYTTPPGIVSQVPPRPGLM 424
QRKE+RQAHL QY Q MA I V+ PSGY + T P ++ P
Sbjct: 369 QRKEERQAHLTNQYMQRMASIRAVPNPVLNPYQPPSGY---FMTAIPQTQNRPAYYPASQ 425
Query: 425 YQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GNMLPQVGAHYMQQ 481
PL W + G RP FQ P + P +R G M + L VGA
Sbjct: 426 MAPLRPSPRWTSQG----ARPHPFQNLPGAIRPAASRPPFGSMRPMSSQLRGVGASQRIA 481
Query: 482 SSQSAA---------SSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSL---GTFNSGGVM 529
+S + A + + + G Q KY R N V++ V
Sbjct: 482 NSSTQALGLPPGASAGAAGAPGVRMGPQYKYAAGVR----NPQQHVNIQPQARVQQPAVH 537
Query: 530 ARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLE 588
+ + L MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE
Sbjct: 538 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLE 597
Query: 589 SPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
SPESL KV+EAV VL+ +AK + Q+A+
Sbjct: 598 SPESLRSKVDEAVAVLQAHQAKEAAQKAV 626
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 154/295 (52%), Gaps = 16/295 (5%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETE 150
P A A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 3 PSAPSYPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEK 210
A A+E +N + K + I S R + N+F+KNLD + + L +
Sbjct: 63 ADAERALETMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDT 118
Query: 211 FSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKA 270
FS FG I S + DE+G S+G+GFV+F+ D A RA++ MNG ++ + ++ R + +
Sbjct: 119 FSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 271 EREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK 330
ERE L + +E +NVY+KN +D+ D LK F + G S KVM DE
Sbjct: 178 EREAELGARAKE----------FTNVYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDES 227
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 228 GTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQ 282
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 282/639 (44%), Positives = 390/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SID L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRVVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 288/646 (44%), Positives = 388/646 (60%), Gaps = 67/646 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PTS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W A G RP FQ P + P R M
Sbjct: 427 QITQLRPSP-----------RWAAQG----ARPHPFQNMPGAIRPTAPRPP----FSTMR 467
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKG-----------------GQSKYVPNGR--IREL 512
P S+Q A ++S Q G Q KY R + L
Sbjct: 468 PASSQVTRVMSTQRVA---NTSTQTMGPRPAAAAAAATPAVRTVSQYKYAAGVRNPQQHL 524
Query: 513 NKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKIT 572
N V++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KIT
Sbjct: 525 NTQPQVAMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKIT 582
Query: 573 GMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
GMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 583 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 276/615 (44%), Positives = 377/615 (61%), Gaps = 37/615 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA+E
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALE 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 GMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +IE +NG + K++YVGRFI K+ ++ L A
Sbjct: 131 AQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D ++E L E F K+G+I S + E+G+SRGFGFV F++PD A RA
Sbjct: 191 FTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACM 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG ++ K LY RAQKKAER++ L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE-----------GSSANVIPSGYPSLYYTTPPGIVSQV 417
AQRKEDR+AHL QY Q MA + G+ +P+ P+ + P ++Q+
Sbjct: 370 AQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGGTGGYFVPTIPPAQRFYG-PAQMTQI 428
Query: 418 PPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAH 477
P P QP A P +P F+ +P RG + +GA
Sbjct: 429 RPSPRWTAQPAVRPNAQSAASAYPNMQPPFRPAP-----------RGPAQAALRSSMGAR 477
Query: 478 YM--QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM 535
+ QQ +A+S + Q G + Y +R + + ++P +
Sbjct: 478 PITGQQGVATASSIRAPIVPQSGRPAGYKYTSNMRN-------PPAPQPAVHIQGQEP-L 529
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
MLAA ++QKQ+LGERL+PL+++ PDL KITGMLLE+DNSELL +LE ESL
Sbjct: 530 TTTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKA 589
Query: 596 KVEEAVQVLKLSEAK 610
KV+EAV VL+ +AK
Sbjct: 590 KVDEAVAVLQAHQAK 604
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 17/195 (8%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P +L++ +L SD+TE L EKFS G + S+ + RD S G+ +VNF P DA
Sbjct: 6 PNYPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RALE MN +I + + +Q R+ LR K NV++KN+D
Sbjct: 66 ERALEGMNFDIIKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDKT 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ + F+ G I S KV +DE G +KG+GFV F + E A+K++ +G +L+ K +
Sbjct: 110 IDNKAMYDTFTAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 169
Query: 365 YVAIAQRKEDRQAHL 379
YV +++R+ L
Sbjct: 170 YVGRFIPRKEREKEL 184
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 279/639 (43%), Positives = 390/639 (61%), Gaps = 50/639 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +VTD +L+D F++ + SVRVC+D T+ RS YGYVN+ +P DA RA+EV
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T LHGK +RI +S RDP R+SG N+F+KNL ++ID+ L + F FGNI+SCKVA
Sbjct: 88 LNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 147
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQ++++E+A AIE LNG + DK++YVG F++K +R + ++TN
Sbjct: 148 VDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQERDMAVDKTRFTN 207
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL EE L + F +FG I S+ + +DE+G SR FGFVNF+N +DA RA+EA+N
Sbjct: 208 VFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALN 267
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + +K + RAQKK+ERE L+H+FE+ +E + K +G N+Y+KN+DD ++D++LK
Sbjct: 268 GYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKE 327
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS GTITS KVMRD G++KG GFV FS+PEEAS+A++ +G M+ KPLYVA+AQRK
Sbjct: 328 LFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRK 387
Query: 373 EDRQAHLQLQYAQH----MAGIEGSSANVIPSGYPSL----YYTTPPGIVSQVPPRPGLM 424
E+R+A LQ Q++Q MA + P G P L +Y PP + +PP+ G
Sbjct: 388 EERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPP--PAMLPPQAGFG 445
Query: 425 YQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQ 484
YQ VP RP P+P Q + + GA +QQ Q
Sbjct: 446 YQ----------QQLVPGMRPG--GGPMPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQ 493
Query: 485 SAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTF-NSGGVMARKPDMLNGMLAAP 543
Q + P GR G G+ G F GG M P + G + P
Sbjct: 494 PVPLM----------QQQMFPRGRGYRYPPGRGLPDGAFPGVGGGMFSIPYDIGGRIVQP 543
Query: 544 -------------SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
SP +Q+ +LGE LYPLVE+ +P+ AK+TGMLLEMD +E+L LLESP
Sbjct: 544 IPVGALATALANASPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESP 603
Query: 591 ESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
E+L KV EA++VL+ VS Q++ +P A +++N
Sbjct: 604 EALKAKVAEAMEVLR----NVSQQQSSNPADQLASLSLN 638
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 23/189 (12%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +VT+ L + F++ G++ S+ + RD + S G+G+VN+ NP DA RALE
Sbjct: 27 TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALE 86
Query: 250 AMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + + K ++Y+ R I + N+++KN+D +
Sbjct: 87 VLNFTPLHGKPIRIMYS-------------------NRDPTIRRSGNGNIFIKNLDKAID 127
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L FS G I S KV D G +KG+GFV + S E A KA+ +G +L+ K +YV
Sbjct: 128 HKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYV 187
Query: 367 AIAQRKEDR 375
RK++R
Sbjct: 188 GPFVRKQER 196
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 279/632 (44%), Positives = 384/632 (60%), Gaps = 60/632 (9%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
P SLYVGDL +VT+ +L+D F++ + S+RVC+D T+ RS YGYVN+ + HDA +A
Sbjct: 27 VPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQA 86
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
IEV N T ++GK +RI +S RDP RKSG N+++KNL ++IDN L + F FG+I+SC
Sbjct: 87 IEVLNFTPVNGKPIRIMYSYRDPTIRKSGTGNIYIKNLDKAIDNKALHDTFSAFGSILSC 146
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
KVAT G+S G+GFVQF+ EESA AI+ LNG + DK++YVG F++K +R A
Sbjct: 147 KVATDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRKQERESAIDKAT 206
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+ N+++KNL TEE L + F ++G I S ++ RD NG SR FGFVNF+NPDDA +++E
Sbjct: 207 FNNVYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVE 266
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
A+NG K Y +AQKK+ERE L+ +FE+ KE + K++G N+YVKN+DD +TD++
Sbjct: 267 ALNGKTFDEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKFQGLNLYVKNLDDSITDDK 326
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS+ GTITS KVMRD G+++G GFV FS+ EEAS+A+ +G M+ KPLYVA+A
Sbjct: 327 LKELFSEFGTITSCKVMRDPNGVSRGSGFVAFSTAEEASRALTEMNGKMVVSKPLYVALA 386
Query: 370 QRKEDRQAHLQLQYAQ---HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRP 421
QRKE+R+A LQ QY+Q MA G + P G P + Y PP I VPP+P
Sbjct: 387 QRKEERRARLQAQYSQIRPAMAPPIGPRMPIYPPGTPGIGHQLFYGQGPPAI---VPPQP 443
Query: 422 GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQ 481
G YQ L G R N FVP +P Q P R G + PQ M
Sbjct: 444 GFGYQ-QQLVPGMRPNFFVPMVQPGQQAQ----RPSGRRSGAGAVQ----PQQPLPMM-- 492
Query: 482 SSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKG--------SGVSLGT----FNSGGVM 529
Q + +P GR+ G +G+ G ++ GG+
Sbjct: 493 ------------------QPQMLPRGRVYRYPPGRSMPDVPMAGLPGGMLPVPYDMGGMP 534
Query: 530 AR--------KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNS 581
R + L LA PEQQ+ +LGE LYPLV++ + + AK+TGMLLEMD +
Sbjct: 535 FRDGAFSQPVQTGALATALANAMPEQQRTLLGENLYPLVDQLEHENAAKVTGMLLEMDQT 594
Query: 582 ELLLLLESPESLAVKVEEAVQVLKLSEAKVST 613
E+L LLESPESL KV EA++VL+ + +V++
Sbjct: 595 EVLHLLESPESLKAKVAEAMEVLRTVQQQVNS 626
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 280/640 (43%), Positives = 389/640 (60%), Gaps = 54/640 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQK+ ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY-----------PSLYYTTPP 411
QRKE+RQAHL QY Q MA + VI PSGY + Y+T
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYHTNQL 428
Query: 412 GIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--G 468
+++ PR W A G RP FQ P + P R M
Sbjct: 429 AQLARPSPR-------------WTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPAS 471
Query: 469 NMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGV 518
+ +P+V + S+Q+ ++ + VP + + LN V
Sbjct: 472 SQVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQV 531
Query: 519 SLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEM 578
++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+
Sbjct: 532 AMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEI 589
Query: 579 DNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 DNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 629
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ++ +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQ 282
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 290/658 (44%), Positives = 395/658 (60%), Gaps = 75/658 (11%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP R+SGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET E+A AIE +NGT + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DAR+A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DDD+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PS 404
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY +
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ-- 461
YY PP ++Q+ P P W A G RP FQ P + P R
Sbjct: 421 AYY--PPSQIAQLRPSP-----------CWTAQG----ARPHPFQNKPGGIRPAAPRLPF 463
Query: 462 NRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQS------------KYVPNGRI 509
+ R + +P+V S+Q A ++S Q G + + VP +
Sbjct: 464 STMRPTSSQVPRV------MSTQRVA---NTSTQTVGPRPAAAAAAAATPAVRTVPRYKY 514
Query: 510 --------RELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLV 560
+ LN V T V + + L MLA+ P++QKQ+LGERL+P +
Sbjct: 515 AAGVRNPQQHLNAQPQV---TMQQSAVHVQGQETLTASMLASAPPQEQKQMLGERLFPPI 571
Query: 561 EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
+ P L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 572 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVDEAVAVLQAHQAKEATQKAVN 629
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 280/630 (44%), Positives = 387/630 (61%), Gaps = 34/630 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGYPSLYYTTPPGIVSQVPPRPG 422
QRKE+RQAHL QY Q MA + VI PSGY + P ++ P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY---FMAAIPQTQNRAAYYPT 425
Query: 423 LMYQPLGLRTG-WRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GNMLPQVGA-- 476
L + W A G RP FQ P + P R M + +P+V +
Sbjct: 426 NQLAQLARPSPRWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ 481
Query: 477 HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVSLGTFNSGGV 528
S+Q+ ++ + VP + + LN V++ + V
Sbjct: 482 RVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQ-PAVHV 540
Query: 529 MARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLE 588
++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE
Sbjct: 541 QGQEP-LTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLE 599
Query: 589 SPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
SPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 600 SPESLRSKVDEAVAVLQAHQAKEAAQKAVN 629
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 106/196 (54%), Gaps = 18/196 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P+ +L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN VI K + +Q R+ LR K N+++KN+D
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQ----RDPSLR------------KSGVGNIFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L FS G I S KV+ DE G +KG+GFV F + E A +A+ +G +L+ +
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Query: 364 LYVAIAQRKEDRQAHL 379
++V + +++R+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 281/620 (45%), Positives = 377/620 (60%), Gaps = 46/620 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 62 TMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +IE +NG + K +YVGRFI K+ ++ L A
Sbjct: 122 AQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D ++E L + F K+G+I S + ++G SRGFGFV F++PD A RA
Sbjct: 182 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACI 241
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG ++ K LY RAQKKAER++ L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 242 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 302 RLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 360
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE-----------GSSANVIPSGYPSLYYTTPPGIVSQV 417
AQRKEDR+AHL QY Q MA + G+S +PS P+ Y P +
Sbjct: 361 AQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPSGASGFFVPSLPPAPRYYGPAQMTQIR 420
Query: 418 PPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVN--PKHNRQNRGRMNGNMLPQVG 475
P P W A PP RP+ Q + N P + R + +G
Sbjct: 421 PTTP-----------RWNAQ---PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLG 466
Query: 476 AHYM--QQSSQSAASSKDS---SNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMA 530
A + QQ +AA+S S + KY PN R + + +
Sbjct: 467 ARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQ---------PAVHIQG 517
Query: 531 RKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
++P + + MLAA ++QKQ+LGERL+PL+++ PDL KITGMLLE+DNSELL +LE
Sbjct: 518 QEP-LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHA 576
Query: 591 ESLAVKVEEAVQVLKLSEAK 610
ESL KV+EAV VL+ +AK
Sbjct: 577 ESLKAKVDEAVAVLQAHQAK 596
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 281/647 (43%), Positives = 388/647 (59%), Gaps = 67/647 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
SLYVGDL +VT+ +L+D F++ + S+RVC+D T+ RS YGYVN+ + HDA +A+E
Sbjct: 29 TSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQALE 88
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
V N T ++GK +RI +S RDP RKSG N+++KNL ++IDN L + F FGNI+SCKV
Sbjct: 89 VLNFTPVNGKPIRIMYSYRDPTIRKSGAGNIYIKNLDKAIDNKALHDTFSAFGNILSCKV 148
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT G+S G+GFVQF+ EESA AI+ LNG + DK++YVG F+++ +R + K+
Sbjct: 149 ATDSAGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRRQERESGTDKTKFN 208
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL TEE L + F ++G I S ++ RD +G SR FGFVNF+NPDDA R++EA+
Sbjct: 209 NVYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEAL 268
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG K Y +AQKK+ERE L+ QFE+ KE + K++G N+YVKN+DD +TD++LK
Sbjct: 269 NGKTFDEKEWYVGKAQKKSEREVELKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLK 328
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS+ GTITS KVMRD G++KG GFV +S+ EEASKA+ +G M+ KPLYVA+AQR
Sbjct: 329 ELFSEFGTITSCKVMRDPNGVSKGSGFVAYSTAEEASKALTEMNGKMIVSKPLYVALAQR 388
Query: 372 KEDRQAHLQLQYAQH---MAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGL 423
KE+R+A LQ Q++Q MA G + P G P + Y PP I VPP+PG
Sbjct: 389 KEERRARLQAQFSQMRPAMAPAVGPRMPMYPHGTPGIGQQLFYGQGPPAI---VPPQPGF 445
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
YQ L G R N FVP +P Q P R G + PQ M
Sbjct: 446 GYQ-QQLVPGMRPNFFVPMVQPGQQAQ----RPSGRRSGAGPVQ----PQQPLPMM---- 492
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSG---VSLGTFNSGGVMARKPDM----- 535
Q + +P GR+ G V + GG++ DM
Sbjct: 493 ----------------QPQMLPRGRVYRYPPGRSMPDVPMAGL-PGGMLPVPYDMGGMPF 535
Query: 536 LNGMLAAP-------------SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSE 582
+G + P +PEQQ+ +LGE LYPLV++ + + AK+TGMLLEMD +E
Sbjct: 536 RDGAFSQPMQTGALATALANATPEQQRTLLGENLYPLVDQLEHENAAKVTGMLLEMDQTE 595
Query: 583 LLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
+L LLESPESL KV EA++VL+ + Q+A P A +++N
Sbjct: 596 VLHLLESPESLEAKVAEAMEVLRTVQ-----QQANSPTNRMATLSLN 637
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEAS 348
++ +++YV +++ +VT+ +L F+Q G I S +V RD G+G+V +++ +A+
Sbjct: 25 QFVSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAA 84
Query: 349 KAVNTFHGYMLHRKPLYVAIAQR 371
+A+ + ++ KP+ + + R
Sbjct: 85 QALEVLNFTPVNGKPIRIMYSYR 107
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/628 (43%), Positives = 385/628 (61%), Gaps = 34/628 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET E+A AIE +NG + D++++VGRF + +R + + A +
Sbjct: 131 VCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F K+G S+ + D++G S+GFGFV+F+ +DA+RA++
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + V+ PSGY + YY P
Sbjct: 369 QRKEERQAHLTSQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYY--PTS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGW---RANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGN 469
++Q+ P P Q G+R N V P+ P P NP RM +
Sbjct: 427 QLAQLRPSPRWATQ--GVRPQHFQNMPNAAVRPSAP----RPQTFNPVRPASQVPRMMTS 480
Query: 470 MLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVM 529
++G+ M +A ++ + + Q KY P R + + + +
Sbjct: 481 Q--RMGSQAMGPRPAAAGAATGPAQVRGVPQYKYAPGVRNPQQRMPTQPQVPMQQPAVHV 538
Query: 530 ARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
+ + MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LES
Sbjct: 539 QGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLES 598
Query: 590 PESLAVKVEEAVQVLKLSEAKVSTQEAI 617
PESL KV+EAV VL+ +AK + Q+++
Sbjct: 599 PESLRSKVDEAVAVLQAHQAKEAAQKSV 626
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 159/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + +E +NVY+KN +D+ DE+LK F + G S +VM D+
Sbjct: 177 KEREAEMGARAKE----------FTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A +AV+ +G ++ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQ 282
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 281/644 (43%), Positives = 389/644 (60%), Gaps = 65/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AI+ +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F K+G S+ + D+NG S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIP-SGYPSLYYTT------------PPGIVSQ 416
QRKE+RQAHL QY Q MA + + + P PS Y+ PPG ++Q
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQ 428
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ---NRGRMNGNMLP 472
+ P P W A G RP FQ P + P R + R N +P
Sbjct: 429 LSPSP-----------RWTAQG----ARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVP 473
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGG-----------------QSKYVPNGRIRE-LNK 514
+V SA ++S Q G Q KY R ++ LN
Sbjct: 474 RV---------MSAQRVANTSTQTMGPRPTTAAAAAASAVRAVPQYKYAAGVRNQQHLNT 524
Query: 515 GSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGM 574
V++ + V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 525 QPQVAMQQ-PAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 582
Query: 575 LLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
LLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+ ++
Sbjct: 583 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKVVN 626
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 159/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN DD+ DE LK F + G S KVM D+
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G ++ K ++V AQ+K +RQ L+ ++ Q
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 281/643 (43%), Positives = 391/643 (60%), Gaps = 57/643 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVA----NLFVKNLIESIDNVRLQEMFQNFGNII 127
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+
Sbjct: 71 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 130
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPS 185
SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L +
Sbjct: 131 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 189
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA+
Sbjct: 190 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 249
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD +
Sbjct: 250 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 309
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLY
Sbjct: 310 DDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 368
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYT 408
VA+AQRKE+RQAHL QY Q MA + VI PSGY + YY
Sbjct: 369 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY- 427
Query: 409 TPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN 467
PP ++Q+ P P W A G RP FQ P + P R M
Sbjct: 428 -PPSQIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMR 471
Query: 468 --GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKG 515
+ +P+V + S+Q+ ++ + VP + + LN
Sbjct: 472 PASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQ 531
Query: 516 SGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGML 575
V++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGML
Sbjct: 532 PQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGML 589
Query: 576 LEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
LE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 632
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 157/296 (53%), Gaps = 12/296 (4%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S ++ + +S G+ +V ++
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A+E LN + + + + + N+F+KNLD + + L +
Sbjct: 62 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYD 121
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 122 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 180
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 181 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 230
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 231 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 286
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 283/646 (43%), Positives = 390/646 (60%), Gaps = 58/646 (8%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +VTD +L+D F++ + SVRVC+D T+ RS YGYVN+ +P DA RA+EV
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T LHGK +RI +S RDP R+SG N+F+KNL ++ID+ L + F FGNI+SCKVA
Sbjct: 88 LNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 147
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQ+++EE+A AIE LNG + DK++YVG F++K +R + ++TN
Sbjct: 148 VDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKHERDMAVDKTRFTN 207
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL EE L + F +FG I S+ + +DE+G SR FGFVNF+N +DA RA+EA+N
Sbjct: 208 VFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALN 267
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + +K + RAQKK+ERE L+H+FE+ KE + K +G N+Y+KN+DD ++DE+LK
Sbjct: 268 GYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEKLKE 327
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS GTITS KVMRD G++KG GFV FS+PEEAS+A++ +G M+ KPLYVA+AQRK
Sbjct: 328 LFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYVALAQRK 387
Query: 373 EDRQAHLQLQYAQH----MAGIEGSSANVIPSGYPSL----YYTTP-PGIVSQVPPRPGL 423
E+R+A LQ Q++Q MA + P G P L +Y P P + +PP+ G
Sbjct: 388 EERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAM---LPPQAGF 444
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
YQ VP RP P+P Q + + GA +QQ
Sbjct: 445 GYQ----------QQLVPGMRPG--GGPMPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQ 492
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTF-NSGGVMARKPDMLNGM--- 539
Q Q + P GR G G+ F GG M P + GM
Sbjct: 493 QPVPLM----------QQQMFPRGRGYRYPPGRGLPDVAFPGVGGGMFSIPYDMGGMPVR 542
Query: 540 ----------------LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSEL 583
LA SP +Q+ +LGE LYPLVE+ +P+ AK+TGMLLEMD +E+
Sbjct: 543 DAGIVQPIPVGALATALANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEV 602
Query: 584 LLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
L LLESPE+L KV EA++VL+ VS Q++ +P A +++N
Sbjct: 603 LHLLESPEALKAKVAEAMEVLR----NVSQQQSSNPADQLASLSLN 644
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 23/189 (12%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +VT+ L + F++ G++ S+ + RD + S G+G+VN+ NP DA RALE
Sbjct: 27 TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALE 86
Query: 250 AMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + + K ++Y+ R I + N+++KN+D +
Sbjct: 87 VLNFTPLHGKPIRIMYS-------------------NRDPTIRRSGNGNIFIKNLDKAID 127
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L FS G I S KV D G +KG+GFV + S E A KA+ +G +L+ K +YV
Sbjct: 128 HKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYV 187
Query: 367 AIAQRKEDR 375
RK +R
Sbjct: 188 GPFVRKHER 196
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 281/644 (43%), Positives = 389/644 (60%), Gaps = 65/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AI+ +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F K+G S+ + D+NG S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIP-SGYPSLYYTT------------PPGIVSQ 416
QRKE+RQAHL QY Q MA + + + P PS Y+ PPG ++Q
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQ 428
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ---NRGRMNGNMLP 472
+ P P W A G RP FQ P + P R + R N +P
Sbjct: 429 LRPSP-----------RWTAQG----ARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVP 473
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGG-----------------QSKYVPNGRIRE-LNK 514
+V SA ++S Q G Q KY R ++ LN
Sbjct: 474 RV---------MSAQRVANTSTQTMGPRPTTAAAAAASAVRAVPQYKYAAGVRNQQHLNT 524
Query: 515 GSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGM 574
V++ + V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 525 QPQVAMQQ-PAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 582
Query: 575 LLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
LLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+ ++
Sbjct: 583 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKVVN 626
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 159/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN DD+ DE LK F + G S KVM D+
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G ++ K ++V AQ+K +RQ L+ ++ Q
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 279/623 (44%), Positives = 376/623 (60%), Gaps = 54/623 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E+G SKG+GFV FETEE+AN +IE +NG + K++YVGRFI K+ ++ L A
Sbjct: 122 AQDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D ++E L + F K+G+I S + E+G+SRGFGFV F++PD A RA
Sbjct: 182 FTNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACL 241
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG ++ K LY RAQKKAER++ L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 242 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 302 RLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 360
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE----------GSSAN-VIPSGYPSLYYTTPPGIVSQV 417
AQRKEDR+AHL QY Q MA + GS+ +P+ P+ + P I
Sbjct: 361 AQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGSAGGYFVPTIPPAQRFYGPAQITQMR 420
Query: 418 PPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSP-------LPVNPKHNRQNRGRMNGNM 470
P + W A PP RP+ Q + P P RG +
Sbjct: 421 PSQ------------RWTAQ---PPVRPSTQTAASAYPNMQAPFRPT----TRGPTQTAL 461
Query: 471 LPQVGAHYM--QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGV 528
+GA + QQ +A S + + VP+GR S V V
Sbjct: 462 RTSLGARPITGQQGVAAAPSIR----------APLVPSGRTAGYKYTSTVRNPPAPQPAV 511
Query: 529 MARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLL 587
+ + L MLAA ++QKQ+LGERL+PL+++ PDL KITGMLLE+DNSELL +L
Sbjct: 512 HIQGQEPLTASMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHML 571
Query: 588 ESPESLAVKVEEAVQVLKLSEAK 610
E ESL KV+EAV VL+ +AK
Sbjct: 572 EHGESLKAKVDEAVAVLQAHQAK 594
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 280/619 (45%), Positives = 378/619 (61%), Gaps = 28/619 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 12 ASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L + F FGNI+SCK+
Sbjct: 72 TMNFDAIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFGNILSCKI 131
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A ++G S G+GFV FETEE+A +IE +NG + K+++VGRF+ + +R+ L A K
Sbjct: 132 AMDQNG-SLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKERLEMLGDKAKK 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL+ + ++ L E F FGKI S + E G RGFGFV+FD+ + A +A+E
Sbjct: 191 FTNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVE 250
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N + K +Y RAQKKAER+ L+ +FE + ERI +Y+G N+YVKN+D+ + DE
Sbjct: 251 ELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINRYQGVNLYVKNLDEQIDDER 310
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FSQ GTITSA+VM E G KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 311 LRKEFSQFGTITSARVM-TEGGRTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALA 369
Query: 370 QRKEDRQAHLQLQYAQHMAG--IEGSSANVI----PSGY--PSLYYTTPPGIVSQVPPRP 421
QRKEDR+AHL QY Q +AG ++G N I +GY P++ T G + P
Sbjct: 370 QRKEDRKAHLAAQYMQRIAGMRMQGQGVNQIFGPGGTGYFVPTMAQTQRGGFYAPTQIAP 429
Query: 422 GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP-----VNPKHNRQNRGRMNGNMLPQVGA 476
+ P W+A P + LP NP+ N Q + R N P G
Sbjct: 430 QVRSTPR-----WQAPN---PRAQTAGYAQLPGSGPMRNPRPNTQ-QVRAGANSRPITGE 480
Query: 477 HYM--QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD 534
M Q ++ A + Q+ KY R G + + V+ +
Sbjct: 481 FRMPGAQVNRPAQPGAMQAGGQQRAPFKYTQAVRNATGQVPGGAAQPQAQTAVVIQGQEP 540
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
+ MLAA +P++QKQ+LGERL+PL++ PDL KITGMLLE+DNSELL +LES ESL
Sbjct: 541 LTASMLAAAAPQEQKQMLGERLFPLIQSMYPDLAGKITGMLLEIDNSELLHMLESRESLK 600
Query: 595 VKVEEAVQVLKLSEAKVST 613
KVEEAV VL+ +AK ST
Sbjct: 601 AKVEEAVAVLQAHQAKEST 619
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 18/191 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L DVTE L EKFS G + S+ + RD S G+ +VNF P DA
Sbjct: 7 PSYPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADA 66
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN I + + +Q R + K N+++KN+D +
Sbjct: 67 ERALDTMNFDAIKGRPIRIMWSQ----------------RDPSLRKSGVGNIFIKNLDKN 110
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S K+ D+ G + G+GFV F + E A ++ +G +L+ K +
Sbjct: 111 IDNKALYDTFSAFGNILSCKIAMDQNG-SLGYGFVHFETEEAARNSIEKVNGMLLNGKKV 169
Query: 365 YVAIAQRKEDR 375
+V +++R
Sbjct: 170 FVGRFMSRKER 180
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 284/638 (44%), Positives = 394/638 (61%), Gaps = 55/638 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS ++ S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L E FSK+G S+ + DENG SRGFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K++Y RAQKK ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY G
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQAAPPSGYFMAAIPQAQNRAAYYPA-AG 427
Query: 413 IVSQVPPRPGLMYQPL------GLRTGWRANGFVPPT----RPAFQVSPLPVNPKHNRQN 462
++Q+ P P Q + + G R +G P T RP+ QV P+
Sbjct: 428 QMAQLRPGPRWTTQNVRPQHFQNMSGGIRPSGPRPQTFSTVRPSSQV------PRMMTTQ 481
Query: 463 RGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKG-GQSKYVPNGR--IRELNKGSGVS 519
R VG M + A ++ ++ +G Q KY R + +N V+
Sbjct: 482 R----------VGTQTM--GPRPATAAAAAATPVRGVPQYKYAAGVRNPQQHMNTQPQVT 529
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 530 MQQ-PAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEID 587
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
NSELL +LESPESL KV+EAV VL+ +AK + Q+ +
Sbjct: 588 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKTV 625
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 161/296 (54%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGQPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN D++ DE+L+ FS+ G S +VM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGFV F E+A KAV+ +G ++ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 NGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQ 282
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 282/639 (44%), Positives = 389/639 (60%), Gaps = 56/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKD---LFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 246
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 247 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 306
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 307 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 365
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 366 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 423
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
V+Q+ P P W A G RP FQ P + P R M +
Sbjct: 424 QVAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 468
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 469 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 528
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 529 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 586
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 587 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 625
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 157/296 (53%), Gaps = 19/296 (6%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDE 223
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 279
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/639 (43%), Positives = 389/639 (60%), Gaps = 56/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKD---LFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 246
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 247 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 306
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 307 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 365
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 366 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 423
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 424 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 468
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 469 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 528
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 529 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 586
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 587 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 625
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 157/296 (53%), Gaps = 19/296 (6%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDE 223
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 279
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 275/630 (43%), Positives = 386/630 (61%), Gaps = 36/630 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS ++ S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L E FSK+G S+ + DENG SRGFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K++Y RAQKK ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG--IVSQVP--------- 418
QRKE+RQAHL QY Q MA S +P+ + Y PP ++ +P
Sbjct: 369 QRKEERQAHLTNQYMQRMA-----SVRAVPNPVINPYQAAPPSGYFMAAIPQAQNRAAYY 423
Query: 419 PRPGLMYQPLGLRTG--WRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
P G M Q LR G W P P P+ + R + + +
Sbjct: 424 PAAGQMAQ---LRPGPRWTTQNVRPQHFQNMSGGIRPSGPRPQTFSTVRPSSQVPRMMTT 480
Query: 477 HYMQQSSQSAASSKDSSNQQKGG-------QSKYVPNGR--IRELNKGSGVSLGTFNSGG 527
+ QS+ + + ++ Q KY R + +N V++ +
Sbjct: 481 QRVGQSTDTTMGPRPATAAAAAATPVRGVPQYKYAAGVRNPQQHMNTQPQVTMQQ-PAVH 539
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLL 587
V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +L
Sbjct: 540 VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHML 598
Query: 588 ESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
ESPESL KV+EAV VL+ +AK + Q+ +
Sbjct: 599 ESPESLRSKVDEAVAVLQAHQAKEAAQKTV 628
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 161/296 (54%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGQPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN D++ DE+L+ FS+ G S +VM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGFV F E+A KAV+ +G ++ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 NGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQ 282
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/639 (43%), Positives = 389/639 (60%), Gaps = 56/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKD---LFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 246
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 247 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 306
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 307 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 365
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 366 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 423
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 424 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 468
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 469 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 528
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 529 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 586
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 587 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 625
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 157/296 (53%), Gaps = 19/296 (6%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDE 223
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 279
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 273/618 (44%), Positives = 390/618 (63%), Gaps = 40/618 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LYVGDL P+V++ EL D FS L SVR+C+DS +G+S CY YVNF P DA +A+
Sbjct: 29 AALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALA 88
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
NHT+L GK +RI WS RDP RK+G+ANLFVKNL SI++ LQ++F FGNI+SCKV
Sbjct: 89 CLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKV 148
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A E+GKSK GFVQF++++SA AA+ LN T + K+++V +F+KK +R S K+T
Sbjct: 149 A-EENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFT 207
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL D+TE+ + +KFS+FGK+ +++I +D NG SRGFGFVNF++PD+A++A+EA+
Sbjct: 208 NVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG+++GSK L+ RAQKKAER+++L+H+ +E I K K SN+YVKN+D V D++L+
Sbjct: 268 NGAMLGSKKLFVGRAQKKAERQELLKHE-KEMVNCNIGKEKASNLYVKNLDASVDDDKLQ 326
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
HFS CG ITSAKVMR + G++KGFGFVCFS+ EEA KA+ T +G +LH + LY+A+AQR
Sbjct: 327 EHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQR 386
Query: 372 KEDRQAHLQLQYAQHMAGIEGS------------SANVIPSGYPSLYYTTPPGIVSQVPP 419
KEDRQ L+ Y+Q++ G S P P+ +P I+ Q
Sbjct: 387 KEDRQRVLRDYYSQYLLQYYGPHFLSSGSSSPDYSFVPFPHPNPTPQINSPQPIICQQFG 446
Query: 420 RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYM 479
R + +P + + P + A Q + N +QN + +P G +Y
Sbjct: 447 RNLGVMRPFAPQNYQQNFSTFIPMKQAQQGN---TNNWGYQQNSRTFATSKVPTQGLNYA 503
Query: 480 QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGM 539
S+Q K +N K G + G + E + R P N
Sbjct: 504 SPSNQKLHFKKKGNN--KSGSEEASSKGSVSEKH---------------FIRAPAQSNVW 546
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
K+I+G LYPLV +P+L KITGMLLEM+NS+++ LL+SP+SLAV+VE+
Sbjct: 547 ------GNSKEIIGHHLYPLVHSLQPELAGKITGMLLEMNNSDIIKLLDSPDSLAVQVEQ 600
Query: 600 AVQVLKLSEAKVSTQEAI 617
AVQ LK ++A ST+ ++
Sbjct: 601 AVQALKEAKAWRSTESSV 618
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 167/287 (58%), Gaps = 17/287 (5%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P T A+L+V +L P + L D F +F ++ S +V +++ G+S C+G+V F S
Sbjct: 111 PRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEEN--GKSKCFGFVQFDSDDS 168
Query: 66 AIRAIEVKNHTQLHGKMLRIS---WSC-RDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
A A+ N T L GK L +S C R + ++ N++VKNL E + +++ F
Sbjct: 169 ATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFS 228
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FG + + + +GKS+G GFV FE+ + A A+E LNG +G K+++VGR KK++R
Sbjct: 229 EFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAER 288
Query: 182 --VLPSP---------AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS 230
+L K +NL++KNLD+ V ++ L E FS G+I S + R ++G S
Sbjct: 289 QELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLS 348
Query: 231 RGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
+GFGFV F ++A++AL +NG+++ + LY A AQ+K +R+++LR
Sbjct: 349 KGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRVLR 395
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 283/648 (43%), Positives = 390/648 (60%), Gaps = 56/648 (8%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS RDP R+SGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET E+A AIE +NGT + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGAKVKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DDD+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PS 404
KPLYVA+AQRKEDRQAHL +Y Q MA + VI PSGY +
Sbjct: 361 KPLYVALAQRKEDRQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ-- 461
YY PP ++Q+ P P W A G RP FQ P + P R
Sbjct: 421 AYY--PPSQIAQLRPSP-----------CWTAQG----ARPHPFQNKPGAIRPAAPRVPF 463
Query: 462 NRGRMNGNMLPQV-GAHYMQQSSQSAASSKDSSNQQKGGQS-KYVPNGRIRE-------- 511
+ R + +P+V Y+ +S A + ++ + + VP + E
Sbjct: 464 STMRPTSSQVPRVMSTQYVANTSTQAVGPRPAAAAAAATPAVRSVPRYKYAEGVCNPQQH 523
Query: 512 LNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
LN V T V + L MLA+ P++QKQ+LGERL+P ++ P L K
Sbjct: 524 LNAQPQV---TMQQPAVHVQGQKTLTASMLASAPPQEQKQMLGERLFPPIQAMHPTLAGK 580
Query: 571 ITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
ITGMLLE+DNSELL +LESP+SL KV+EAV VL+ + K +TQ+A++
Sbjct: 581 ITGMLLEIDNSELLHMLESPQSLRSKVDEAVAVLQAHQVKEATQKAVN 628
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 287/658 (43%), Positives = 395/658 (60%), Gaps = 75/658 (11%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP R+SGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET E+A AIE +NGT + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DDD+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PS 404
KPLYVA+AQRKE+RQAHL +Y Q MA + VI PSGY +
Sbjct: 361 KPLYVALAQRKEERQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ-- 461
YY PP ++Q+ P P W A G RP FQ P + P R
Sbjct: 421 AYY--PPSQIAQLRPSP-----------CWTAQG----ARPHPFQNKPGGIRPAAPRLPF 463
Query: 462 NRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQS------------KYVPNGRI 509
+ R + +P+V S+Q A ++S Q G + + VP +
Sbjct: 464 STMRPTSSQVPRV------MSTQRVA---NTSTQTVGPRPAAAAAAAATPAVRTVPRYKY 514
Query: 510 --------RELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLV 560
+ LN V T V + + L MLA+ P++QKQ+LGERL+P +
Sbjct: 515 AAGVRNPQQHLNAQPQV---TMQQSAVHVQGQETLTASMLASAPPQEQKQMLGERLFPPI 571
Query: 561 EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
+ P L KITGMLLE+DNSELL +LESP+SL KV+EAV VL+ +AK +TQ+A++
Sbjct: 572 QAMHPTLAGKITGMLLEIDNSELLHMLESPQSLRSKVDEAVAVLQAHQAKEATQKAVN 629
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 283/648 (43%), Positives = 390/648 (60%), Gaps = 56/648 (8%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS DP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DDD+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PS 404
KPLYVA+AQRKE+RQA+L +Y Q MA + VI PSGY +
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNHA 420
Query: 405 LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNR 463
YY PP ++Q+ P P W A G RP FQ P + P R
Sbjct: 421 AYY--PPSQIAQLRPSP-----------CWTAQG----ARPHPFQNKPSAICPAAPRVPF 463
Query: 464 GRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RE 511
M + +P+V + S+Q+ ++ + VP + +
Sbjct: 464 STMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAATPAVRTVPRYKYAAGVRNPQQH 523
Query: 512 LNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
LN V T V + + L MLA+ P++QKQ+LGERL+PL+E +P L K
Sbjct: 524 LNAQPEV---TMQQPAVHVQGQETLTASMLASAPPQKQKQMLGERLFPLIEAMRPTLAGK 580
Query: 571 ITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
ITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 581 ITGMLLEIDNSELLHMLESPESLGSKVDEAVAVLQAHQAKEATQKAVN 628
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 279/635 (43%), Positives = 377/635 (59%), Gaps = 64/635 (10%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +VTD +L+D F++ + SVRVC+D TT RS YGYVN+ +P DA RA++V
Sbjct: 35 SLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 94
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T L+ + +RI +S RDP RKSG N+F+KNL ++ID+ L + F +FGNI+SCKVA
Sbjct: 95 LNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVA 154
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQF+TEE+A AIE LNG + DK++YVG F++K +R AK+ N
Sbjct: 155 VDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNN 214
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL T++ L + F +FG I S ++ RD +G S+ FGFVNF++ DDA RA+EA+N
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALN 274
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I K Y +AQKK+ERE L+ +FE+ KE KY+G+N+YVKN+DD + DE+LK
Sbjct: 275 GKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKE 334
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS GTITS KVMRD G+++G GFV FS+PEEAS+A+ +G M+ KPLYV +AQRK
Sbjct: 335 LFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRK 394
Query: 373 EDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGL 423
EDR+A LQ Q+AQ M + P G P + Y PP I +P +PG
Sbjct: 395 EDRRARLQAQFAQMRPVSMPPSVAPRMPMYPPGGPGMGQQIFYGQGPPAI---IPSQPGF 451
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
YQ VP RP +P+P +P V Q
Sbjct: 452 GYQ----------QQLVPGMRPGG--APVP--------------NFFVPMVQQGQQGQRP 485
Query: 484 QSAASSKDSSNQQKGG--QSKYVPNGRIRELNKGSGVSLG------------TFNSGGVM 529
+QQ + +P GR+ G G+ G ++ GG+
Sbjct: 486 GGRRGGGVQQSQQPVPLMPQQMLPRGRVYRYPPGRGMPDGPMPGVAGGMYSVPYDVGGMP 545
Query: 530 ARKPDM--------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNS 581
R + L LA SPEQQ+ +LGE LYPLVE+ +PD AK+TGMLLEMD +
Sbjct: 546 IRDASLSQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQT 605
Query: 582 ELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEA 616
E+L LLESPE+L KV EA+ VL+ V+ Q+A
Sbjct: 606 EVLHLLESPEALKAKVAEAMDVLR----NVAQQQA 636
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 104/191 (54%), Gaps = 23/191 (12%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +VT+ L + F++ G++ S+ + RD S G+G+VN+ NP DA RAL+
Sbjct: 34 TSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 250 AMNGSVIGS---KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + + + +++Y+ R I K N+++KN+D +
Sbjct: 94 VLNFTPLNNRPIRIMYS-------------------HRDPSIRKSGQGNIFIKNLDKAID 134
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L FS G I S KV D G +KG+GFV F + E A KA+ +G +L+ K +YV
Sbjct: 135 HKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 194
Query: 367 AIAQRKEDRQA 377
RK++R++
Sbjct: 195 GPFLRKQERES 205
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/644 (43%), Positives = 388/644 (60%), Gaps = 65/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AI+ +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F K+G S+ + D+NG S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
M G + K ++ RAQKK ER+ L+ +FE+ ++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIP-SGYPSLYYTT------------PPGIVSQ 416
QRKE+RQAHL QY Q MA + + + P PS Y+ PPG ++Q
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQ 428
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ---NRGRMNGNMLP 472
+ P P W A G RP FQ P + P R + R N +P
Sbjct: 429 LRPSP-----------RWTAQG----ARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVP 473
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGG-----------------QSKYVPNGRIRE-LNK 514
+V SA ++S Q G Q KY R ++ LN
Sbjct: 474 RV---------MSAQRVANTSTQTMGPRPTTAAAAAASAVRAVPQYKYAAGVRNQQHLNT 524
Query: 515 GSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGM 574
V++ + V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 525 QPQVAMQQ-PAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 582
Query: 575 LLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
LLE+DNSELL +LESPESL +KV+EAV VL+ +AK + Q+ ++
Sbjct: 583 LLEIDNSELLHMLESPESLRLKVDEAVAVLQAHQAKEAAQKVVN 626
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 159/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN DD+ DE LK F + G S KVM D+
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G ++ K ++V AQ+K +RQ L+ ++ Q
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/630 (44%), Positives = 380/630 (60%), Gaps = 33/630 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ LRI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FSK+G S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + + +Y RAQKK ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPP-----GIVSQVPPRPGLM 424
QRKE+RQAHL QY Q MA + +P+ + Y PP + Q R
Sbjct: 369 QRKEERQAHLTNQYMQRMATVRA-----VPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYY 423
Query: 425 Y--QPLGLRTG--WRANGFVPPTRPAFQVSP---LPVNPKHNRQNRGRMNGNMLPQVGAH 477
Q LR G W G P FQ P P P+ N R QV
Sbjct: 424 SANQLAQLRPGPRWATQGVRPQH---FQNMPNAMRPTAPRPQPLNTIRAAATTNTQVPRM 480
Query: 478 YMQQSSQSAASSKDSSNQQKGG-------QSKYVPNGRIRELNKGSGVSLGTFNSGGVMA 530
Q + A ++ +N Q KY R + + S + T V
Sbjct: 481 MASQRIPTQAVNQRPANASAAAAPVRAMPQYKYAAGVRNTQQHMASQPQV-TMQQPAVHV 539
Query: 531 RKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
+ + L MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LES
Sbjct: 540 QGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLES 599
Query: 590 PESLAVKVEEAVQVLKLSEAKVSTQEAIHP 619
PESL KV+EAV VL+ +AK + Q++ P
Sbjct: 600 PESLRSKVDEAVAVLQAHQAKEAAQKSSTP 629
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 159/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPLR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + E +NVY+KN +D+ DE+LK FS+ G S +VM DE
Sbjct: 177 KEREAELGARARE----------FTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ + +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQ 282
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 278/624 (44%), Positives = 383/624 (61%), Gaps = 44/624 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD+T+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F K+GK S+ + D G S+GFGFV+F+ ++A +A+E
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+L+ RAQKKAER+ L+ +FE+ ++ER+ +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YY P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRPTYYA--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNRQNRGRMNG 468
++Q+ P P + G R GF Q P P ++P + +RG
Sbjct: 427 QMTQMRPNP-------RWQQGGRPQGFQGMPNAMRQSGPRPALRHLSPANAPASRGLPAA 479
Query: 469 NMLPQVG--AHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
VG A + AA + + K S P+ ++ L L
Sbjct: 480 AQRVGVGTAAQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPGVQPLQAPQPAVL------ 533
Query: 527 GVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLL 586
V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +
Sbjct: 534 -VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHM 591
Query: 587 LESPESLAVKVEEAVQVLKLSEAK 610
LESPESL KVEEAV VL+ +AK
Sbjct: 592 LESPESLRSKVEEAVAVLQAHQAK 615
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ D+T+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 274/634 (43%), Positives = 377/634 (59%), Gaps = 41/634 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ LRI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+GFV FET E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F +G S+ + D+ G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + + +Y RAQKK ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE
Sbjct: 250 DMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + V+ PSGY + YY+
Sbjct: 369 QRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYSA--N 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLP 472
++Q+ P P W G P Q + P P+ N R +
Sbjct: 427 QLAQLRPSP-----------RWATQGVRPQHFQNIQNAMRPSAPRPQTFNAIRASTATNT 475
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGG-------QSKYVPNGRIRELNKGSGVSLGTFNS 525
QV Q + A S+ + Q KY P R + + S +
Sbjct: 476 QVPRMMASQRMPTQALSQRPAAASATTAPVRAMPQYKYAPGVRNPQQHMASQQQVPMPQP 535
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
+ + + MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL
Sbjct: 536 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLH 595
Query: 586 LLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHP 619
+LESPESL KV+EAV VL+ +AK + Q++ P
Sbjct: 596 MLESPESLRSKVDEAVAVLQAHQAKEAAQKSTTP 629
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 157/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPLR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + E +NVY+KN +D+ DE+LK F G S +VM D+
Sbjct: 177 KEREAELGARARE----------FTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ + +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 TGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQ 282
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 284/631 (45%), Positives = 390/631 (61%), Gaps = 57/631 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FSK+GK S+ + D +G S+GFGFV+F+ +DA +A+E
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 DMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM +E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YY P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRPTYYA--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNRQ-NRGRMN 467
++Q+ P P +Q G R GF Q P P + P N Q +RG
Sbjct: 427 QMAQMRPNP--RWQQAG-----RLQGFQGMPNAMRQSGPRPALRHLTPAGNAQASRG--- 476
Query: 468 GNMLP----QVG----AHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVS 519
LP +VG A + + AA++ + K + P+ I+ L
Sbjct: 477 ---LPAAPQRVGVPPAAQNLAPRAPVAAATPRAVPPYKYASNVRSPHPAIQPLQAPQPAV 533
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 534 -------HVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 585
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
NSELL +LESPESL KVEEAV VL+ +AK
Sbjct: 586 NSELLHMLESPESLRSKVEEAVAVLQAHQAK 616
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/614 (44%), Positives = 370/614 (60%), Gaps = 24/614 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L+ FS + S+RVC+D T RS Y Y+NF P DA A++
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + G+ +RI WS RDP RKSGV N+F+KN+ ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+AN AIE +NG + D++++VG F + +R + + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ E L F++FGK S+ + DE G SRGFGFVNF N DARRA+
Sbjct: 190 FTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVT 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +VLY RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + DE+
Sbjct: 250 EMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F+ GTITSAKVM D G ++GFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY---PSLYYTTPPGIVSQVPPRPGLMYQ 426
QRKE+R+A L QY Q +A I IP+ Y Y T+ P + S P L
Sbjct: 369 QRKEERKAILTNQYIQRLASIRAIPGPAIPTTYQQGSGYYMTSVPQVRSFYNAVPNLRPA 428
Query: 427 PLGLRTGWRANGFVP--------PTRPAFQVSPLPVNPKH--NRQNRGRMNGNMLPQVGA 476
P R G P P RP+ +S + + N RM G
Sbjct: 429 PRWASQAPRTQGPFPAQFVRQAVPRRPSTTISTVRQASTQVPHINNTQRMANIGTQTAGG 488
Query: 477 HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDML 536
+ + + K S+ + Q P + ++ + + ++ M + +
Sbjct: 489 RAAGTAVRGVSQYKYSAGVRNVQQVINAPAPVVHQVVQNTEPAVH-------MKGQEPLT 541
Query: 537 NGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
MLAA ++QKQ+LGERLYPL++ P L KITGMLLE+DNSELL +LESPESL K
Sbjct: 542 ASMLAAAPLKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHMLESPESLHAK 601
Query: 597 VEEAVQVLKLSEAK 610
VEEAV VL+ +AK
Sbjct: 602 VEEAVAVLQAHQAK 615
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 109/195 (55%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
PA +L++ +L +DVTE L +KFS G+I S+ + RD S G+ ++NF P DA
Sbjct: 6 PAYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
AL+ MN VI + + +Q R+ LR K N+++KN+D+
Sbjct: 66 ECALDTMNYEVIKGRPIRIMWSQ----RDPGLR------------KSGVGNIFIKNMDES 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G +KG+GFV F + E A++A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A +
Sbjct: 169 FVGHFKSRKEREAEM 183
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/648 (43%), Positives = 390/648 (60%), Gaps = 56/648 (8%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS DP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DDD+ DE L+ FS GTITSAKVM E G ++GFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM-EGGRSRGFGFVCFSSPEEATKAVTEMNGIIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PS 404
KPLYV++A RKE+RQA+L +Y Q MAG+ VI PSGY +
Sbjct: 361 KPLYVSLAHRKEERQAYLTNEYMQRMAGVRAVPNPVINPYQPAPPSGYFMAAVPQTQNHA 420
Query: 405 LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNR 463
YY PP ++Q+ P P W A G RP FQ P + P R
Sbjct: 421 AYY--PPSQIAQLRPSP-----------CWTAQG----ARPHPFQNKPSAICPAAPRVPF 463
Query: 464 GRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RE 511
M + +P+V + S+Q+ ++ + VP + +
Sbjct: 464 STMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAATPAVRTVPRYKYAAGVRNPQQH 523
Query: 512 LNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
LN V T V + + L MLA+ P++QKQ+LGERL+PL+E +P L K
Sbjct: 524 LNAQPEV---TMQQPAVHVQGQETLTASMLASAPPQKQKQMLGERLFPLIEAMRPTLAGK 580
Query: 571 ITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
ITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 581 ITGMLLEIDNSELLHMLESPESLGSKVDEAVAVLQAHQAKEATQKAVN 628
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 278/645 (43%), Positives = 386/645 (59%), Gaps = 69/645 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+GFV FET+E+A AI+ +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F ++G S+ + D++G SRGFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 DMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F+ G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFTPFGSITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIP-SGYPSLYYTT------------PPGIVSQ 416
QRKE+RQAHL QY Q MA + + + P PS Y+ PPG ++Q
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQ 428
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
+ P P W A G P +P N R + P
Sbjct: 429 LRPSP-----------RWTAQGARP-------------HPFQNMAGAIRPSAPRPPTFST 464
Query: 477 HYMQQSSQ-----SAASSKDSSNQQKG-----------------GQSKYVPNGR--IREL 512
M+ +SQ SA ++S Q G Q KY R + L
Sbjct: 465 --MRPTSQVPRVMSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNTQQHL 522
Query: 513 NKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKIT 572
N V++ + V ++P + MLAA P++QKQ+LGERL+PL++ P L KIT
Sbjct: 523 NTQPQVAMQQ-PAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKIT 580
Query: 573 GMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
GMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+ +
Sbjct: 581 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKVV 625
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F Q G S KVM D+
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGFV F E+A KAV+ +G L+ K ++V AQ+K +RQ L+ ++ Q
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQ 282
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 271/614 (44%), Positives = 370/614 (60%), Gaps = 24/614 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L+ FS + S+RVC+D T RS Y Y+NF P DA A++
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + G+ +RI WS RDP RKSGV N+F+KN+ ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+AN AIE +NG + D++++VG F + +R + + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ E L F++FGK S+ + DE G SRGFGFVNF N DARRA+
Sbjct: 190 FTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVT 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +VLY RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + DE+
Sbjct: 250 EMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F+ GTITSAKVM D G ++GFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY---PSLYYTTPPGIVSQVPPRPGLMYQ 426
QRKE+R+A L QY Q +A I IP+ Y Y T+ P + S P L
Sbjct: 369 QRKEERKAILTNQYIQRLASIRAIPGPAIPTTYQQGSGYYMTSVPQVRSFYNAVPNLRPA 428
Query: 427 PLGLRTGWRANGFVP--------PTRPAFQVSPLPVNPKH--NRQNRGRMNGNMLPQVGA 476
P R G P P RP+ +S + + N RM G
Sbjct: 429 PRWAFQAPRTQGPFPAQFVRQAVPRRPSTTISTVRQASTQVPHINNTQRMANIGTQTAGG 488
Query: 477 HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDML 536
+ + + K S+ + Q P + ++ + + ++ M + +
Sbjct: 489 RAAGTAVRGVSQYKYSAGVRNVQQVINAPAPVVHQVVQNTEPAVH-------MKGQEPLT 541
Query: 537 NGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
MLAA ++QKQ+LGERLYPL++ P L KITGMLLE+DNSELL +LESPESL K
Sbjct: 542 ASMLAAAPLKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHMLESPESLHAK 601
Query: 597 VEEAVQVLKLSEAK 610
VEEAV VL+ +AK
Sbjct: 602 VEEAVAVLQAHQAK 615
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 109/195 (55%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
PA +L++ +L +DVTE L +KFS G+I S+ + RD S G+ ++NF P DA
Sbjct: 6 PAYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
AL+ MN VI + + +Q R+ LR K N+++KN+D+
Sbjct: 66 ECALDTMNYEVIKGRPIRIMWSQ----RDPGLR------------KSGVGNIFIKNMDES 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G +KG+GFV F + E A++A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A +
Sbjct: 169 FVGHFKSRKEREAEM 183
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/627 (44%), Positives = 373/627 (59%), Gaps = 43/627 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+T++ L E F K+G I S + ++G SRGFGFV F++PD A +A+
Sbjct: 191 FTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG V K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM +E G +KGFGFVCFS+PEEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE----------GSSANVIPSGYPSLYYTTPPGIVSQVP 418
AQRKEDR+AHL QY Q +A + G + N P P ++Q+
Sbjct: 370 AQRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIR 429
Query: 419 PRPGLMYQPLGLR----TG----------WRANGFVPPTRPAFQVSPLPVNPKHNRQNRG 464
P QP +R TG +RA P +P S L P +Q G
Sbjct: 430 TTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITGQQTVG 489
Query: 465 RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFN 524
N QS A + S Q + KY N +R + + T
Sbjct: 490 GAN------------MQSRSMAGPAVGVSAQSRPSNYKYTSN--MRNPPQAMAIPTPTPV 535
Query: 525 SGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSEL 583
V + + L MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSEL
Sbjct: 536 QQAVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSEL 595
Query: 584 LLLLESPESLAVKVEEAVQVLKLSEAK 610
L +LE ESL KVEEAV VL+ +AK
Sbjct: 596 LHMLEHNESLKAKVEEAVAVLQAHQAK 622
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 17/196 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L SD+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R+ LR K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++ ++ + FS G I S KV +DE G++KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKK 168
Query: 364 LYVAIAQRKEDRQAHL 379
+YV +++R+ L
Sbjct: 169 VYVGKFIPRKEREKEL 184
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 270/615 (43%), Positives = 372/615 (60%), Gaps = 41/615 (6%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +VTD +LFDAF + ++ +VRVC+D T RS YGYVNF +P DA RAI+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+ L+GK +R+ +S RDP R+SG N+F+KNL ESID+ L + F +FGNI+SCKVA
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVA 156
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQ+ EESA AIE LNG + DK++YVG F+++ +R + K+TN
Sbjct: 157 VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN 216
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL T++ L F ++GKI S ++ +D G S+GFGFVNF+N DDA RA+E++N
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y RAQKK+ERE LR ++E+ KE K++ SN+YVKN+D ++DE+LK
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS GT+TS+KVMRD G +KG GFV F++PEEA++A++ G M+ KPLYVAIAQRK
Sbjct: 337 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Query: 373 EDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGL 423
EDR+ LQ Q++Q M G V P G P + Y PP + +PP+PG
Sbjct: 397 EDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAM---IPPQPGY 453
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
YQ VP RP P+P +P V +
Sbjct: 454 GYQ----------QQLVPGMRPG--GGPVP--------------SFFMPMVQPQQQRPGG 487
Query: 484 QSAASS-KDSSNQQKGGQSKYVPNGRIRELNKGSGVS--LGTFNSGGVMARKPDMLNGML 540
+ S Q Q + P GR+ +G G S + ++ G M L L
Sbjct: 488 GRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNL 547
Query: 541 AAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA 600
+ +PEQQ+ +LGE LYPLVE+ + + AK+TGMLLEMD +E+L LLESPE+L KV EA
Sbjct: 548 SNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 607
Query: 601 VQVLKLSEAKVSTQE 615
+ VL+ A +T++
Sbjct: 608 MDVLRSVAAGGATEQ 622
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 102/193 (52%), Gaps = 27/193 (13%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +VT+ L + F + G + ++ + RD S G+G+VNF NP DA RA++
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 250 AMN-----GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+N G I +V+Y+ R + + N+++KN+D+
Sbjct: 96 ELNYIPLYGKPI--RVMYS-------------------HRDPSVRRSGAGNIFIKNLDES 134
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ + L FS G I S KV D G +KG+GFV +++ E A KA+ +G +L+ K +
Sbjct: 135 IDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194
Query: 365 YVAIAQRKEDRQA 377
YV R+++R +
Sbjct: 195 YVGPFLRRQERDS 207
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEAS 348
++ +++YV ++D +VTD +L F Q GT+ + +V RD + G+G+V F++P++A+
Sbjct: 32 QFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAA 91
Query: 349 KAVNTFHGYMLHRKPLYVAIAQR 371
+A+ + L+ KP+ V + R
Sbjct: 92 RAIQELNYIPLYGKPIRVMYSHR 114
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 270/615 (43%), Positives = 372/615 (60%), Gaps = 41/615 (6%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +VTD +LFDAF + ++ +VRVC+D T RS YGYVNF +P DA RAI+
Sbjct: 21 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 80
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+ L+GK +R+ +S RDP R+SG N+F+KNL ESID+ L + F +FGNI+SCKVA
Sbjct: 81 LNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVA 140
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQ+ EESA AIE LNG + DK++YVG F+++ +R + K+TN
Sbjct: 141 VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL T++ L F ++GKI S ++ +D G S+GFGFVNF+N DDA RA+E++N
Sbjct: 201 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y RAQKK+ERE LR ++E+ KE K++ SN+YVKN+D ++DE+LK
Sbjct: 261 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS GT+TS+KVMRD G +KG GFV F++PEEA++A++ G M+ KPLYVAIAQRK
Sbjct: 321 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 380
Query: 373 EDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGL 423
EDR+ LQ Q++Q M G V P G P + Y PP + +PP+PG
Sbjct: 381 EDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAM---IPPQPGY 437
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
YQ VP RP P+P +P V +
Sbjct: 438 GYQ----------QQLVPGMRPG--GGPVP--------------SFFMPMVQPQQQRPGG 471
Query: 484 QSAASS-KDSSNQQKGGQSKYVPNGRIRELNKGSGVS--LGTFNSGGVMARKPDMLNGML 540
+ S Q Q + P GR+ +G G S + ++ G M L L
Sbjct: 472 GRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNL 531
Query: 541 AAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA 600
+ +PEQQ+ +LGE LYPLVE+ + + AK+TGMLLEMD +E+L LLESPE+L KV EA
Sbjct: 532 SNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 591
Query: 601 VQVLKLSEAKVSTQE 615
+ VL+ A +T++
Sbjct: 592 MDVLRSVAAGGATEQ 606
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 102/193 (52%), Gaps = 27/193 (13%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +VT+ L + F + G + ++ + RD S G+G+VNF NP DA RA++
Sbjct: 20 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 79
Query: 250 AMN-----GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+N G I +V+Y+ R + + N+++KN+D+
Sbjct: 80 ELNYIPLYGKPI--RVMYS-------------------HRDPSVRRSGAGNIFIKNLDES 118
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ + L FS G I S KV D G +KG+GFV +++ E A KA+ +G +L+ K +
Sbjct: 119 IDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 178
Query: 365 YVAIAQRKEDRQA 377
YV R+++R +
Sbjct: 179 YVGPFLRRQERDS 191
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEAS 348
++ +++YV ++D +VTD +L F Q GT+ + +V RD + G+G+V F++P++A+
Sbjct: 16 QFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAA 75
Query: 349 KAVNTFHGYMLHRKPLYVAIAQR 371
+A+ + L+ KP+ V + R
Sbjct: 76 RAIQELNYIPLYGKPIRVMYSHR 98
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 284/654 (43%), Positives = 379/654 (57%), Gaps = 78/654 (11%)
Query: 1 MAVVPPTATTP-----------------ASLYVGDLHPDVTDGELFDAFSEFKSLASVRV 43
MA VPP P SLYVGDL +VTD +L+D F++ + SVRV
Sbjct: 1 MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRV 60
Query: 44 CKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLF 103
C+D T+ RS YGYVN+ +P DA RA++V N T L+G +R+ +S RDP RKSG N+F
Sbjct: 61 CRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIF 120
Query: 104 VKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
+KNL ++ID+ L + F FG+I+SCKVAT G+SKG GFVQF+TEE+A AIE LNG
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGM 180
Query: 164 TVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIA 223
+ DK+++VG F++K +R S K+ N+F+KNL +EE L F +FG I S+++
Sbjct: 181 LLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVM 240
Query: 224 RDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
RD G S+ FGFVNF+N DDA R++EA+NG + K Y +AQKK+ERE L+ +FE+
Sbjct: 241 RDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQS 300
Query: 284 RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS 343
KE KY+G+N+YVKN+DD + D++LK F+ GTITS KVMRD GI++G GFV FSS
Sbjct: 301 VKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSS 360
Query: 344 PEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYP 403
PEEA++A+ +G M+ KPLYVA+AQRKEDR+A LQ Q++Q SS V P G P
Sbjct: 361 PEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASS--VAPRGMP 418
Query: 404 SLYYTTPPGIVSQV-----PP-----RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP 453
+Y PGI Q+ PP +PG YQ L G R G
Sbjct: 419 -MYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQ-QQLMPGMRPGG--------------- 461
Query: 454 VNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGG--QSKYVPNGRIRE 511
G M +P V Q S + QQ Q + +P GR+
Sbjct: 462 ----------GPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYR 511
Query: 512 LNKGSGV-SLGTFNSGGVMARKPDMLNGM-------------------LAAPSPEQQKQI 551
G G+ L G M P + GM LA +P+QQ+ +
Sbjct: 512 YPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTM 571
Query: 552 LGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
LGE LYPLVE+ +PD AK+TGMLLEMD +E+L LLESPE+L KV EA++VL+
Sbjct: 572 LGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 625
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/638 (43%), Positives = 391/638 (61%), Gaps = 39/638 (6%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P A+ P ASLYVGDLH DVT+ L++ FS ++ S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ EE L + F+K+G S+ + D++G SRGFGFV+F+
Sbjct: 182 ELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++R+ +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVML-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG--IVSQVPP 419
KPLYVA+AQRKE+RQAHL QY Q MA S +P+ + Y PP ++ +P
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMA-----SVRAVPNPVINPYQPAPPSGYFMTAIP- 414
Query: 420 RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKH--NRQN-------RGRMNGNM 470
Q + A G + RP+ + V P+H N Q+ R +M G+M
Sbjct: 415 ------QAQNRGAYYPAAGQMAQLRPSPRWPTQGVRPQHFQNMQSAMRSSGPRPQMFGSM 468
Query: 471 LPQVGAHYMQQSSQSAASS----------KDSSNQQKG-GQSKYVPNGRIRELNKGSGVS 519
P M + + A + ++N +G Q KY R + + +
Sbjct: 469 RPSSQLPRMTANQRVATQAMGPRTATTATSITANSVRGVSQYKYATGVRNTQQHVNAQPQ 528
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ V+ + + MLAA +QKQ+LGERL+PL++ L KITGMLLE+D
Sbjct: 529 VTVQQPAVVVQGQEPLTTTMLAAAPLHEQKQMLGERLFPLIQAMHLSLAGKITGMLLEID 588
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
NSELL +LESPESL KV+EAV VL+ +AK + Q+++
Sbjct: 589 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSV 626
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 161/296 (54%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + E +NVY+KN DD+ +E+L+ F++ G S +VM D+
Sbjct: 177 KEREAELGARARE----------FTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGFV F E+A KAV+ +G ++ KP+YV AQ+K +RQA L+ ++ Q
Sbjct: 227 SGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQ 282
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 275/641 (42%), Positives = 389/641 (60%), Gaps = 70/641 (10%)
Query: 7 TATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
T++ P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P D
Sbjct: 5 TSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKV E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAEL 183
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
+ A ++TN+++KN D+ +E L E FSK+GK S+ + D +G S+GFGFV+F+ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHED 243
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A++ MNG + K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD
Sbjct: 244 ANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 303
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ DE+L+ FS G+ITSAKVM +E G +KGFGFVCFSSPEEA+KAV +G ++ KP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------Y 406
LYVA+AQRKE+R+AHL QY Q +AG+ AN + P GY P++ Y
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRIAGMRALPANTLINQFQPAPGGYFVPAVPQTQSRPTY 422
Query: 407 YTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRM 466
Y P ++Q+ RPG +Q G R GF P+P +H+
Sbjct: 423 YA--PNHMAQI--RPGPRWQQTG-----RPQGF----------QPMPNTLRHSG------ 457
Query: 467 NGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFN-- 524
P+ +M S+ Q+ G S G ++ ++ +
Sbjct: 458 -----PRQSLRHMPPSNAQGTRGIPGVTQRVGVSSSTQTMGPRPPVSAPPPRAVPPYKYT 512
Query: 525 ---------------SGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVA 569
+ V ++P + MLA+ P++QKQ+LGERL+PL++ P L
Sbjct: 513 RCPLPVVQPLQAPQPAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAG 571
Query: 570 KITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
KITGMLLE+DNSELL +LESPESL KVEEAV VL+ +AK
Sbjct: 572 KITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAK 612
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 284/654 (43%), Positives = 378/654 (57%), Gaps = 78/654 (11%)
Query: 1 MAVVPPTATTP-----------------ASLYVGDLHPDVTDGELFDAFSEFKSLASVRV 43
MA VPP P SLYVGDL +VTD +L+D F++ + SVRV
Sbjct: 1 MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRV 60
Query: 44 CKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLF 103
C+D T+ RS YGYVN+ +P DA RA++V N T L+G +R+ +S RDP RKSG N+F
Sbjct: 61 CRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIF 120
Query: 104 VKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
+KNL ++ID+ L + F FG+I+SCKVAT G+SKG GFVQF+TEE+A AIE LNG
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGM 180
Query: 164 TVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIA 223
+ DK+++VG F++K +R S K+ N+F+KNL +EE L F +FG I S+++
Sbjct: 181 LLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVM 240
Query: 224 RDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
RD G S+ FGFVNF+N DDA R++EA+NG + K Y +AQKK+ERE L+ +FE+
Sbjct: 241 RDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQS 300
Query: 284 RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS 343
KE KY+G+N+YVKN+DD + D++LK F+ GTITS KVMRD GI++G GFV FSS
Sbjct: 301 VKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSS 360
Query: 344 PEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYP 403
PEEA++A+ +G M+ KPLYVA+AQRKEDR A LQ Q++Q SS V P G P
Sbjct: 361 PEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQMQPMAMASS--VAPRGMP 418
Query: 404 SLYYTTPPGIVSQV-----PP-----RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP 453
+Y PGI Q+ PP +PG YQ L G R G
Sbjct: 419 -MYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQ-QQLMPGMRPGG--------------- 461
Query: 454 VNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGG--QSKYVPNGRIRE 511
G M +P V Q S + QQ Q + +P GR+
Sbjct: 462 ----------GPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYR 511
Query: 512 LNKGSGV-SLGTFNSGGVMARKPDMLNGM-------------------LAAPSPEQQKQI 551
G G+ L G M P + GM LA +P+QQ+ +
Sbjct: 512 YPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTM 571
Query: 552 LGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
LGE LYPLVE+ +PD AK+TGMLLEMD +E+L LLESPE+L KV EA++VL+
Sbjct: 572 LGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 625
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 275/615 (44%), Positives = 372/615 (60%), Gaps = 28/615 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+T++ L E F K+G I S + ++G SRGFGFV F++PD A +A+
Sbjct: 191 FTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG V K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM +E G +KGFGFVCFS+PEEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE----------GSSANVIPSGYPSLYYTTPPGIVSQVP 418
AQRKEDR+AHL QY Q +A + G + N P P ++Q+
Sbjct: 370 AQRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIR 429
Query: 419 PRPGLMYQPLGLRTGWR--ANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
P QP +R + ++GF A P P+ G M VG
Sbjct: 430 TTPRWPAQPNQVRPNAQTGSSGF------ATMQGPFRAAPRAPTAQPGAMRSQQT--VGG 481
Query: 477 HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDML 536
MQ S A + S Q + KY N +R + + T V + + L
Sbjct: 482 ANMQSRSM-AGPAVGVSAQSRPSNYKYTSN--MRNPPQAMAIPTPTPVQQAVHIQGQEPL 538
Query: 537 NG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE ESL
Sbjct: 539 TASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKA 598
Query: 596 KVEEAVQVLKLSEAK 610
KVEEAV VL+ +AK
Sbjct: 599 KVEEAVAVLQAHQAK 613
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 17/196 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L SD+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R+ LR K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++ ++ + FS G I S KV +DE G++KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKK 168
Query: 364 LYVAIAQRKEDRQAHL 379
+YV +++R+ L
Sbjct: 169 VYVGKFIPRKEREKEL 184
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 280/625 (44%), Positives = 383/625 (61%), Gaps = 46/625 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRGRMN 467
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPT 479
Query: 468 GNMLPQV--GAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNS 525
V + + AA++ + K S P+ I+ L V
Sbjct: 480 TTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAQPAVH------ 533
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL
Sbjct: 534 --VQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 590
Query: 586 LLESPESLAVKVEEAVQVLKLSEAK 610
+LESPESL KV+EAV VL+ AK
Sbjct: 591 MLESPESLRSKVDEAVAVLQAHHAK 615
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/622 (44%), Positives = 375/622 (60%), Gaps = 33/622 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+T++ L E F K+G I S + ++G SRGFGFV F++PD A +A+
Sbjct: 191 FTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG V K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM E G +KGFGFVCFS+PEEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRREFAPFGTITSAKVMM-EDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSS-ANVIPSGYPSLYY--TTP-------PGIVSQVP 418
AQRKEDR+AHL QY Q +A + + P G Y+ T P P ++Q+
Sbjct: 370 AQRKEDRKAHLASQYMQRLANMRMQQMGQMFPPGGAGNYFVPTIPQPQRFYGPAQMAQIR 429
Query: 419 PRPGLMYQPLGLRTGWRA--NGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ--- 473
P QP +R + +GF A P P+ G M + +
Sbjct: 430 ATPRWPAQPNQVRPNAQTGNSGF------ATMQGPFRTTPRAPTAQAGTMRSTLSARPIT 483
Query: 474 ----VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVM 529
VG MQ S A + S Q + KY N +R + + T V
Sbjct: 484 GQQAVGGANMQSRSM-AGPAVGVSAQSRPSNYKYTSN--MRNPPQAMAIPAPTPVQQAVH 540
Query: 530 ARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLE 588
+ + L MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE
Sbjct: 541 IQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLE 600
Query: 589 SPESLAVKVEEAVQVLKLSEAK 610
ESL KVEEAV VL+ +AK
Sbjct: 601 HNESLKAKVEEAVAVLQAHQAK 622
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 108/196 (55%), Gaps = 17/196 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L +D+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R+ LR K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++ ++ + FS G I S KV +DE G++KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKK 168
Query: 364 LYVAIAQRKEDRQAHL 379
+YV +++R+ L
Sbjct: 169 VYVGKFIPRKEREKEL 184
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 273/614 (44%), Positives = 375/614 (61%), Gaps = 39/614 (6%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +VTD +L+D F++ + SVRVC+D TT RS YGYVN+ +P DA RA++V
Sbjct: 30 SLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 89
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T L+GK +R+ +S RDP RKSG N+F+KNL ++ID+ L + F FG+I+SCKVA
Sbjct: 90 LNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVA 149
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQF+ EESA AIE LNG + DK++YVG F++K +R +K+ N
Sbjct: 150 LDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNN 209
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL TEE L + FS+FG + S+++ RD +G SR FGFVNF+N DDA RA++ +N
Sbjct: 210 VFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLN 269
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G ++ K Y +AQKK+ERE L+H+FE+ KE KY+G+N+Y+KN+DD + D++LK
Sbjct: 270 GKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKE 329
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F+ GTITS KVMRD GI++G GFV FS+P+EAS+A+ +G M+ KPLYVA+AQRK
Sbjct: 330 LFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRK 389
Query: 373 EDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGL 423
EDR+A LQ Q++Q M + P G P + Y PP + +P + G
Sbjct: 390 EDRRARLQAQFSQIRSVPMPASVAPRMPIYPPGGPGIGQQLFYGQAPPAM---IPSQGGF 446
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
YQ VP RP P+P Q + + GA Q +
Sbjct: 447 GYQ----------QQLVPGIRPGG--GPMPNFFVPMVQQGQQGQRPGGRRAGA---VQQT 491
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTF----NSGGVMARKP------ 533
Q +GG+ P GR GV+ G F + GG+ R
Sbjct: 492 QQPVPMMQQQMLPRGGRVYRYPPGRGLPDVAMPGVAGGMFSVPYDMGGMPLRDAAHSQPI 551
Query: 534 --DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
L LA +P+QQ+ +LGE LYPLVE+ +PD AK+TGMLLEMD +E+L LLESPE
Sbjct: 552 PIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPE 611
Query: 592 SLAVKVEEAVQVLK 605
+L KV EA++VL+
Sbjct: 612 ALKAKVAEAMEVLR 625
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 23/189 (12%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +VT+ L + F++ G++ S+ + RD S G+G+VN+ NP DA RAL+
Sbjct: 29 TSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 88
Query: 250 AMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + + K V+Y+ R I K N+++KN+D +
Sbjct: 89 VLNFTPLNGKPIRVMYS-------------------HRDPSIRKSGAGNIFIKNLDKAID 129
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L FS G+I S KV D G +KG+GFV F + E A KA+ +G +L+ K +YV
Sbjct: 130 HKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYV 189
Query: 367 AIAQRKEDR 375
RK++R
Sbjct: 190 GPFLRKQER 198
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 273/633 (43%), Positives = 376/633 (59%), Gaps = 59/633 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L+ FS + S+RVC+D T RS Y Y+NF P DA A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + G+ +RI WS RDP RKSGV N+F+KN+ +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNYDVIKGRPIRIMWSQRDPALRKSGVGNIFIKNIDDSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
E G SKG+GFV FET+E+AN AIE +NG + D++++VG F + +R + + K
Sbjct: 131 VCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGTKVMK 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++T+E L E FS FGK S+ + RDE G SRGFGFVN+ + +DA++A++
Sbjct: 190 FTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K++Y RAQK+ ER+ L+ +F++ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGVNLYVKNLDDSIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGTITSAKVM-TEAGQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGI--------VSQVPPRP 421
QR+E+R+A L +Y Q MA + + +I S + S YY T P + VS V P P
Sbjct: 369 QRREERKAILTNKYMQRMATLRTMPSPIIDSYHQSGYYMTVPQVRSFYNHNAVSNVRPIP 428
Query: 422 GLMYQP-----------LGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNM 470
QP +G R + + + A +P + N G
Sbjct: 429 RWPGQPQRPQDPYSSHIVGGSFARRGSTTITTVKQASTQAPRIIASTQKTNNIG------ 482
Query: 471 LPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKY------------VPNGRIRELNKGSGV 518
+Q+ D + + GQ KY VP R S V
Sbjct: 483 ------------TQTVGGRADVAGVLRSGQYKYSSAVRNPLHVVTVPAPMTR-----SQV 525
Query: 519 SLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE 577
+ V P+ L MLAA P QKQ+LG+RLYPL+ +P+L KITGMLLE
Sbjct: 526 VPVSMVEPPVHILGPEPLTASMLAAAPPMDQKQLLGDRLYPLILAQQPNLAGKITGMLLE 585
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+DNSELL +LESPESL KV+EA+ VL+ +AK
Sbjct: 586 IDNSELLHMLESPESLKSKVDEAIAVLQAHQAK 618
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 164/291 (56%), Gaps = 22/291 (7%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L + F G I+S +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKF 214
+ +N + + I I S R PA + + N+F+KN+D + + L + FS F
Sbjct: 70 DTMNYDVIKGRPIR----IMWSQR---DPALRKSGVGNIFIKNIDDSIDNKALYDTFSAF 122
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
G I S + DE G S+G+GFV+F+ + A RA+E MNG ++ + ++ + + ERE
Sbjct: 123 GNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREV 181
Query: 275 ILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK 334
+F K ++K+ +N+Y+KN D++TDE+LK FS G S +VMRDEKG ++
Sbjct: 182 ----EFGTK----VMKF--TNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSR 231
Query: 335 GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
GFGFV ++ E+A KAV+ +G ++ K +YV AQ++ +RQ L+ ++ Q
Sbjct: 232 GFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQ 282
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 105/195 (53%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L +KFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
AL+ MN VI + + +Q R+ LR K N+++KNIDD
Sbjct: 66 ECALDTMNYDVIKGRPIRIMWSQ----RDPALR------------KSGVGNIFIKNIDDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE+G +KG+GFV F + E A++A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+
Sbjct: 169 FVGHFKSRKEREVEF 183
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/619 (44%), Positives = 380/619 (61%), Gaps = 49/619 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + R + +
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAIRQSGPRPTLRHLAPTGV 470
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
P + + AA++ + K S P+ I+ L V +
Sbjct: 471 P-TAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAV-------HVQGQ 522
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
+P + MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPE
Sbjct: 523 EP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 581
Query: 592 SLAVKVEEAVQVLKLSEAK 610
SL KV+EAV VL+ AK
Sbjct: 582 SLRSKVDEAVAVLQAHHAK 600
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 275/622 (44%), Positives = 374/622 (60%), Gaps = 33/622 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+T++ L E F K+G I S + ++G SRGFGFV F++PD A +A+
Sbjct: 191 FTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG V K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM +E G +KGFGFVCFS+PEEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE----------GSSANVIPSGYPSLYYTTPPGIVSQVP 418
AQRKEDR+AHL QY Q +A + G + N P P ++Q+
Sbjct: 370 AQRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIR 429
Query: 419 PRPGLMYQPLGLRTGWR--ANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ--- 473
P QP +R + ++GF A P P+ G M + +
Sbjct: 430 TTPRWPAQPNQVRPNAQTGSSGF------ATMQGPFRAAPRAPTAQAGTMRNTLSARPIT 483
Query: 474 ----VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVM 529
VG MQ S A + S Q + KY N +R + + T V
Sbjct: 484 GQQAVGGANMQNRSM-AGPAVGVSAQSRPSNYKYTSN--MRNPPQAMAIPAPTPVQQAVH 540
Query: 530 ARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLE 588
+ + L MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE
Sbjct: 541 IQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLE 600
Query: 589 SPESLAVKVEEAVQVLKLSEAK 610
ESL KVEEAV VL+ +AK
Sbjct: 601 HNESLKAKVEEAVAVLQAHQAK 622
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 17/196 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L SD+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R+ LR K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++ ++ + FS G I S KV +DE G++KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKK 168
Query: 364 LYVAIAQRKEDRQAHL 379
+YV +++R+ L
Sbjct: 169 VYVGKFIPRKEREKEL 184
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/627 (44%), Positives = 374/627 (59%), Gaps = 43/627 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+T++ L + F K+G I S + ++G SRGFGFV F++PD A +A+
Sbjct: 191 FTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG V K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM +E G +KGFGFVCFS+PEEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE----------GSSANVIPSGYPSLYYTTPPGIVSQVP 418
AQRKEDR+AHL QY Q +A + G + N P P ++Q+
Sbjct: 370 AQRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIR 429
Query: 419 PRPGLMYQPLGLR----TG----------WRANGFVPPTRPAFQVSPLPVNPKHNRQNRG 464
P QP +R TG +RA P +P S L P +Q
Sbjct: 430 TTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITGQQT-- 487
Query: 465 RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFN 524
VG MQ S A + + Q + KY N +R + + T
Sbjct: 488 ---------VGGANMQNRSM-AGPAVGVTAQSRPSNYKYTSN--MRNPPQAMAIPAPTPV 535
Query: 525 SGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSEL 583
V + + L MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSEL
Sbjct: 536 QQAVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSEL 595
Query: 584 LLLLESPESLAVKVEEAVQVLKLSEAK 610
L +LE ESL KVEEAV VL+ +AK
Sbjct: 596 LHMLEHNESLKAKVEEAVAVLQAHQAK 622
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 17/196 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L SD+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R+ LR K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++ ++ + FS G I S KV +DE G++KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKK 168
Query: 364 LYVAIAQRKEDRQAHL 379
+YV +++R+ L
Sbjct: 169 VYVGKFIPRKEREKEL 184
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 277/631 (43%), Positives = 380/631 (60%), Gaps = 57/631 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FSK+GK S+ + D G S+GFGFV+F+ +DA +A+E
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+AHL QY Q +AG+ AN I++Q P G + P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRALPANT---------------IINQFQPAAGGYFMPAV 413
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG-----NMLPQVGA-----HYM 479
+ R + P Q++ + NP+ Q GR G N + Q G H
Sbjct: 414 PQAQSRPTYYAPN-----QMAQMRPNPRW--QQGGRPQGFQGMPNAMRQSGPRPALRHLA 466
Query: 480 QQSSQSAASSKDSSNQQKG----GQS----------------KYVPNGRIRELNKGSGVS 519
+ A+ S Q+ G GQS Y +R +
Sbjct: 467 PAGTAPASRGLPVSAQRVGVTTAGQSLAPRPPVAAPAPRAVPPYKYASSVRSPHPPVQPL 526
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 527 QAPQPAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 585
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
NSELL +LESPESL KVEEAV VL+ +AK
Sbjct: 586 NSELLHMLESPESLRSKVEEAVAVLQAHQAK 616
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 279/642 (43%), Positives = 388/642 (60%), Gaps = 50/642 (7%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS DP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGY----------PSLYYTTP 410
KPLYVA+AQRKE+RQA+L +Y Q MA + + PSGY + YY P
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY--P 418
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-- 467
P ++++ P P W A G RP FQ P + P R M
Sbjct: 419 PSQIARLRPSP-----------RWTAQG----ARPHPFQNKPSAIRPGAPRVPFSTMRPA 463
Query: 468 GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSG 517
+ +P+V + S+Q+ ++ + VP + + LN
Sbjct: 464 SSQVPRVMSTQRVANTSTQTVGPRPAAAAAAATPAVRTVPRYKYAAGVRNPQQHLNAQPE 523
Query: 518 VSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLL 576
V T V + + L MLA+ P++QKQ+LGERL+PL+E +P L KITGMLL
Sbjct: 524 V---TMQQPAVHVQGQETLTASMLASAPPQKQKQMLGERLFPLIEAMRPTLAGKITGMLL 580
Query: 577 EMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
E+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 581 EIDNSELLHMLESPESLGSKVDEAVAVLQAHQAKEATQKAVN 622
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/623 (44%), Positives = 377/623 (60%), Gaps = 48/623 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY+GDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP R+SGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+GFV FET+E+A+ AIE +NG + D++++VGRF + +R + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEFGAKARE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKF-GKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
+TN+++KN D+ +E L E F ++ GK S+ + DE G S+GFGFV+F+ +DA++A+
Sbjct: 190 FTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAV 249
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ MN + + +Y RAQKKAER+ L+ +FE ++ER+ KY+G N+YVKN+DD++ DE
Sbjct: 250 DEMNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKNLDDNINDE 309
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L FS GTITSAKVM +E G ++GFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 310 RLWKEFSPFGTITSAKVMMEE-GRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL 368
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVI--------PSGY-----------PSLYYTT 409
AQRKE+R+ HL Q+ Q +AG+ + I SGY + YYT
Sbjct: 369 AQRKEERKMHLTSQFMQRLAGMRAVPPSAIIGQYQPAAASGYFMAAMPQQAQGRTAYYTP 428
Query: 410 PPGIVSQVPPRPGLMYQPLGLR-TGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG 468
P P RP + PL +R G A GF T P Q +P P + +N
Sbjct: 429 SP----MAPMRPNPRW-PLQVRPQGAHAAGFQAITGPMRQPAPRPTQMRT-------VNP 476
Query: 469 NMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQS--KYVPNGRIRELN----KGSGVSLGT 522
+PQV ++SQ Q G ++ Y G +R +G G
Sbjct: 477 ASVPQV-----PRASQGMMPRPTFPTQAAGPRALPGYKYTGSVRNPQQPGVQGPGAMQQA 531
Query: 523 FNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSE 582
S + + + MLAA P +QKQ+LGERL+PL+ P L KITGMLLE+DNSE
Sbjct: 532 PQSAVHIQGQEPLTASMLAAAPPHEQKQMLGERLFPLIHGMYPTLAGKITGMLLEIDNSE 591
Query: 583 LLLLLESPESLAVKVEEAVQVLK 605
LL +LESPESL KVEEAV VL+
Sbjct: 592 LLHMLESPESLRAKVEEAVAVLQ 614
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF P DA
Sbjct: 6 PSYPMASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN V+ K + +Q R + + N+++KN+D
Sbjct: 66 ERALDTMNFDVVKGKPIRIMWSQ----------------RDPSLRRSGVGNIFIKNLDKS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G +KG+GFV F + E A KA+ +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAADKAIEKMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A
Sbjct: 169 FVGRFKSRKEREAEF 183
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 286/652 (43%), Positives = 388/652 (59%), Gaps = 73/652 (11%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P+ TT SLYVGDLH DV D +L+D F++ + SVR+C+D T +S YGYVNF + HD
Sbjct: 19 PSLTT-ISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHD 77
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A +AI+V N T L+GK++RI +S RDP ARKSG AN+F+KNL ++ID+ L + F FGN
Sbjct: 78 AAKAIDVLNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFGN 137
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCKVAT G+SKGHGFVQFE+EESA AI+ LNG + DK+++VG F++K DR
Sbjct: 138 ILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESAL 197
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
K+ N+F+KNL +TE L F ++G I S ++ RD +G S+GFGFVNF N DDA
Sbjct: 198 SGTKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAA 257
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+EA+NG K Y +AQKK+ERE L+ Q E+ KE + KY G+N+Y+KN+DD V
Sbjct: 258 KAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYIKNLDDSV 317
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DEEL FS+ GTITS KVMRD GI++G GFV FS E A++A+ +G M+ KPLY
Sbjct: 318 GDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLY 377
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSAN----VIPSGYPS-----LYYTTPPGIVSQ 416
VA+AQRKEDR+A LQ Q++Q + + + P G P+ LY P +
Sbjct: 378 VALAQRKEDRRARLQAQFSQSRPAAITPNVSPRMPLYPLGAPAIGQQFLYGQAAPATI-- 435
Query: 417 VPPRPGLMYQPL---GLRTGWRANGFVP---------------PTRPAFQV-SPLPVNPK 457
P+ YQ G+R G N +VP + P Q+ PLP+
Sbjct: 436 --PQAAFGYQQHFVPGMRPGGAPNFYVPLVQQGQQGQRPGGHRGSGPMQQLQQPLPL--- 490
Query: 458 HNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSG 517
M+ MLP+ H + S S + N Q G VP G +
Sbjct: 491 --------MHQQMLPR--GHVYRYPSGS-----NMQNIQLAG----VPGGMV-------- 523
Query: 518 VSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE 577
T+ G M + L LA +PEQQ+ +LGE LYPLV+K + + AK+TGMLLE
Sbjct: 524 ----TYGIGQQMPTQ--ALASALANATPEQQRTMLGEALYPLVDKLEHEAAAKVTGMLLE 577
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
MD E+L L+ESP++L KV EA+ VLK KV+ Q++ P A +++N
Sbjct: 578 MDQPEVLHLIESPDALKAKVVEAMDVLK----KVTQQQSNSPADQLASLSLN 625
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 281/644 (43%), Positives = 381/644 (59%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPTLRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + + Q GG VPN R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYKY 525
Query: 527 GVMARKPD--------------------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPD 566
R P + MLAA P++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 273/615 (44%), Positives = 372/615 (60%), Gaps = 28/615 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+T++ L + F K+G I S + ++G SRGFGFV F++PD A +A+
Sbjct: 191 FTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG V K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM +E G +KGFGFVCFS+PEEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE----------GSSANVIPSGYPSLYYTTPPGIVSQVP 418
AQRKEDR+AHL QY Q +A + G + N P P ++Q+
Sbjct: 370 AQRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIR 429
Query: 419 PRPGLMYQPLGLRTGWR--ANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
P QP +R + ++GF A P P+ G M VG
Sbjct: 430 TTPRWPAQPNQVRPNAQTGSSGF------ATMQGPFRAAPRAPTAQPGAMRSQQT--VGG 481
Query: 477 HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDML 536
MQ S A + + Q + KY N +R + + T V + + L
Sbjct: 482 ANMQNRSM-AGPAVGVTAQSRPSNYKYTSN--MRNPPQAMAIPAPTPVQQAVHIQGQEPL 538
Query: 537 NG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE ESL
Sbjct: 539 TASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKA 598
Query: 596 KVEEAVQVLKLSEAK 610
KVEEAV VL+ +AK
Sbjct: 599 KVEEAVAVLQAHQAK 613
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 17/196 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L SD+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R + K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----------------RDPSLRKSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++ ++ + FS G I S KV +DE G++KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKK 168
Query: 364 LYVAIAQRKEDRQAHL 379
+YV +++R+ L
Sbjct: 169 VYVGKFIPRKEREKEL 184
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/612 (45%), Positives = 371/612 (60%), Gaps = 31/612 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+T++ L E F K+G I S + ++G SRGFGFV F++PD A +A+
Sbjct: 191 FTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG V K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM E G +KGFGFVCFS+PEEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRREFAPFGTITSAKVMM-EDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSS-ANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQP 427
AQRKEDR+AHL QY Q +A + + P G Y+ P I P+P Y P
Sbjct: 370 AQRKEDRKAHLASQYMQRLANMRMQQMGQMFPPGGAGNYFV--PTI-----PQPQRFYGP 422
Query: 428 LGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRG--RMNGNM-----LPQVGAHYMQ 480
+ RA P + P V P N G M G P A M+
Sbjct: 423 AQM-AQIRAT-------PRWPAQPNQVRPNAQTGNSGFATMQGPFRTTPRAPTAQAGTMR 474
Query: 481 QS-SQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNG- 538
+ S ++ S Q + KY N +R + + T V + + L
Sbjct: 475 STLSARPITAVGVSAQSRPSNYKYTSN--MRNPPQAMAIPAPTPVQQAVHIQGQEPLTAS 532
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE ESL KVE
Sbjct: 533 MLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVE 592
Query: 599 EAVQVLKLSEAK 610
EAV VL+ +AK
Sbjct: 593 EAVAVLQAHQAK 604
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 108/196 (55%), Gaps = 17/196 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L +D+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R+ LR K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++ ++ + FS G I S KV +DE G++KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKK 168
Query: 364 LYVAIAQRKEDRQAHL 379
+YV +++R+ L
Sbjct: 169 VYVGKFIPRKEREKEL 184
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 275/630 (43%), Positives = 389/630 (61%), Gaps = 32/630 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ LRI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FSK+G S+ + D+ G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + + +Y RAQKK ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE
Sbjct: 250 DMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + V+ PSGY + YY+
Sbjct: 369 QRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQTQNRAAYYSA--N 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRAN--GFVPPTRPAFQ-VSPLPVNPKHNRQNRGRMNGN 469
++Q+ P P Q G+R N G + P+ P Q ++ + N Q M
Sbjct: 427 QLAQLRPSPRWTTQ--GVRPQHFQNMPGAMRPSAPRPQALNAIRPTAAGNAQVPRMMASQ 484
Query: 470 MLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVM 529
+P A + Q + A+++ + + Q KY R + + S + ++
Sbjct: 485 RMP---AQTLGQRAAGASTTAAAPVRTM-PQYKYAAGVRNPQQHMASQPQVPMQQPAVLV 540
Query: 530 ARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
+ + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LES
Sbjct: 541 QGQEPLTASMLASAPPQEQKQMLGERLFPLIQDVHPSLAGKITGMLLEIDNSELLHMLES 600
Query: 590 PESLAVKVEEAVQVLKLSEAKVSTQEAIHP 619
PESL K++EAV VL+ +AK + Q++ P
Sbjct: 601 PESLRSKMDEAVAVLQAHQAKEAAQKSTTP 630
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 159/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPLR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + E +NVY+KN +D+ DE+LK FS+ G S +VM D+
Sbjct: 177 KEREAELGARARE----------FTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ + +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 GGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQ 282
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 274/631 (43%), Positives = 381/631 (60%), Gaps = 57/631 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FSK+GK S+ + D +G S+GFGFV+F+ +DA +A+E
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSP+EA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+AHL QY Q +AG+ AN I++Q P PG + P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRALPANT---------------IINQFQPTPGGYFMPAV 413
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG-----NMLPQVGA----HYMQ 480
+ R PP Q++ + NP+ Q GR G N + Q G ++
Sbjct: 414 PQAQNR-----PPYYAPNQIAQMRPNPRW--QQGGRPQGFQGVPNAIRQSGPRPTLRHLT 466
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPN---------------------GRIRELNKGSGVS 519
+S + AS + Q+ G V N +R +
Sbjct: 467 PASNTQASRGLPTTPQRVGVPTAVQNLSPRPSVATPAPRAVPPYKYAANVRSPHPAIQPL 526
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+D
Sbjct: 527 QTPQPAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEID 585
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
NSELL +LESPESL KVEEAV VL+ AK
Sbjct: 586 NSELLHMLESPESLRSKVEEAVAVLQAHHAK 616
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 278/624 (44%), Positives = 381/624 (61%), Gaps = 43/624 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRGRMN 467
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRG--- 476
Query: 468 GNMLPQVGAHY-MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
LP + + QS A + + Y +R + +
Sbjct: 477 ---LPTTAQRVGVPTAVQSLAPRAAVAAAAPRAVAPYKYASSVRSPHPAMQPLQAPQPAV 533
Query: 527 GVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLL 586
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +
Sbjct: 534 HVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHM 592
Query: 587 LESPESLAVKVEEAVQVLKLSEAK 610
LESPESL KV+EAV VL+ AK
Sbjct: 593 LESPESLRSKVDEAVAVLQAHHAK 616
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 277/639 (43%), Positives = 381/639 (59%), Gaps = 73/639 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + R +G
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI----------RQSG--- 457
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
P+ ++ + + AS + Q+ G VPN R + R
Sbjct: 458 PRPTLRHLAPTGNAPASRGLPTTTQRVGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVR 517
Query: 532 KPD--------------------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKI 571
P + MLAA P++QKQ+LGERL+PL++ +L KI
Sbjct: 518 SPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKI 577
Query: 572 TGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
TGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 578 TGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 616
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 275/632 (43%), Positives = 380/632 (60%), Gaps = 29/632 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
E+G S+G+GFV FET E+AN AI +NG + D++++VG F + +R + A +
Sbjct: 131 VCDENG-SRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKSRREREAEYGAKAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +++ E L E FS FGK S+ + D G S+GFGFVNF+ DA++A+E
Sbjct: 190 FTNVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++LY RAQK+ ER+ L+ +FE+ ++ER+ +Y+G N+YVKN+DD + DE
Sbjct: 250 DMNGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG-IVSQVP-PRPGLMY-- 425
QRKE+R+A L QY Q +A + + S P PPG V +P P+P Y
Sbjct: 369 QRKEERKAILTNQYMQRLATLRTLPGPLFCSFQP------PPGYFVPSIPQPQPRTPYYN 422
Query: 426 ----QPLGLRTGWRANGFVPPTRPAFQVSPLPVN--PKH--NRQNRGRMNGNMLPQVGAH 477
P+ W PP+ L N P+ N + R +P+V +
Sbjct: 423 ASPVAPVRPAPRWNGQHSRPPSSYHTATPVLRTNAPPRRILNNISTMRQASTQVPRVPPN 482
Query: 478 YMQQS---SQSAASSKDSSNQQKGGQSKYVPNGRIRE---LNKGSGVSLGTFNSGGVMAR 531
+ + +Q+ + S G S+Y + +R LN + + V
Sbjct: 483 AQRMANIGTQTVSVRAPSPPTFSRGISQYKYSSAVRNIQPLNAMPPIPMQQVVEPAVHIH 542
Query: 532 KPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
+ L MLAA P++QKQILGERLYPL+ P L KITGMLLE+DNSELLL+LESP
Sbjct: 543 GQEPLTASMLAAAPPQEQKQILGERLYPLIHAMHPFLAGKITGMLLEIDNSELLLMLESP 602
Query: 591 ESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYL 622
ESL K+EEAV VL++ + S+ ++ +L
Sbjct: 603 ESLHSKIEEAVAVLQVHQMSESSHKSASTAFL 634
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 18/193 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI + + +Q R+ LR K N+++KN+DD
Sbjct: 66 ERALDTMNFEVIKGRPIRIMWSQ----RDPGLR------------KSGVGNIFIKNLDDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G ++G+GFV F + E A++A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAANRAIATMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQA 377
+V + + +R+A
Sbjct: 169 FVGNFKSRREREA 181
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 273/631 (43%), Positives = 377/631 (59%), Gaps = 57/631 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FSK+GK S+ + D G S+GFGFV+F+ +DA +A+E
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ER+ +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGAITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+AHL QY Q +AG+ AN I++Q P G + P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRALPANT---------------IINQFQPAAGGYFMPAV 413
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG-----NMLPQVGA-----HYM 479
+ R + P Q++ + NP+ Q GR G N + Q G H
Sbjct: 414 PQAQSRPTYYAPN-----QMTQMRPNPRW--QQGGRPQGFQGMPNAMRQSGPRPALRHLA 466
Query: 480 QQSSQSAASSKDSSNQQKG--------------------GQSKYVPNGRIRELNKGSGVS 519
S A+ ++ Q+ G Y +R +
Sbjct: 467 PAGSAPASRGLPAAAQRVGVGTAAQNLGPRPPVAAPAPRAVPPYKYASSVRSPHPAVQPL 526
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 527 QAPQPAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 585
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
NSELL +LESPESL KVEEAV VL+ +AK
Sbjct: 586 NSELLHMLESPESLRSKVEEAVAVLQAHQAK 616
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 283/648 (43%), Positives = 384/648 (59%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG VPN R +
Sbjct: 480 TTQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVA 537
Query: 523 FNSGGVMARKPD--------------------MLNGMLAAPSPEQQKQILGERLYPLVEK 562
R P + MLAA P++QKQ+LGERL+PL++
Sbjct: 538 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 275/619 (44%), Positives = 381/619 (61%), Gaps = 49/619 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + R + +
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAIRQSGPRPTLRHLAPTGV 470
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
P + + AA++ + K S P+ I+ L V +
Sbjct: 471 P-TAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAV-------HVQGQ 522
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
+P + MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPE
Sbjct: 523 EP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 581
Query: 592 SLAVKVEEAVQVLKLSEAK 610
SL KV+EAV VL+ AK
Sbjct: 582 SLRSKVDEAVAVLQAHHAK 600
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 273/629 (43%), Positives = 373/629 (59%), Gaps = 52/629 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L+ FS + S+RVC+D T RS Y YVNF P DA A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + G+ +RI WS RDP RKSGV N+F+KN+ ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
E G SKG+GFV FET+E+AN AIE +NG + D++++VG F + +R + S A K
Sbjct: 131 VCDEKG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGSKAMK 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D T+E L E FS FG+ S+ + +DE G SRGFGFVN+ + +DA++A+
Sbjct: 190 FTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVN 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+LY RAQK+ ER+ L+ +F++ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F+ GTITSAKVM D +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFAPYGTITSAKVMTDGSQ-SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPP----------GIVSQVPP 419
QR+E+R+A L +Y Q +A + ++ +I S + S YY T P VS V P
Sbjct: 369 QRREERKAILTNKYMQRLATLRTMASPLIDSYHQSGYYVTLPQPPMRSFYNHSAVSSVRP 428
Query: 420 RPGLMYQP---LGLRTGWRANGFVP--------PTRPAFQVSPLPVNPKHNRQNRGRMNG 468
P QP G T +G VP R A +P V + G
Sbjct: 429 VPRWTGQPPRPQGPYTTQLVSGSVPRRGSTPIATVRQASTQAPRIVTSTQKTNDIG---- 484
Query: 469 NMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGV 528
+Q+ D ++ + Q KY +R + V ++
Sbjct: 485 --------------TQTVGGRTDIASVARSSQYKYA--SAVRNPQQVVTVPAPMVHNDLQ 528
Query: 529 MARKPDMLNG-------MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNS 581
+ P + G +LAA P QKQ+LGERLYPL+ P+L KITGMLLE+DNS
Sbjct: 529 LMEPPVHIQGPEPLTASVLAAAPPMDQKQLLGERLYPLIHALHPNLAGKITGMLLEIDNS 588
Query: 582 ELLLLLESPESLAVKVEEAVQVLKLSEAK 610
ELL +LES ESL KV+EA+ VL+ +AK
Sbjct: 589 ELLHMLESQESLHAKVDEAIAVLQAHQAK 617
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 106/195 (54%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
PA +L++ +L DVTE L +KFS G I S+ + RD S G+ +VNF P DA
Sbjct: 6 PAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
AL+ MN VI + + +Q R+ LR K N+++KN+D+
Sbjct: 66 ECALDTMNYDVIKGRPIRIMWSQ----RDPGLR------------KSGVGNIFIKNMDES 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DEKG +KG+GFV F + E A++A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEKG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+
Sbjct: 169 FVGHFKSRKEREVEF 183
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 275/643 (42%), Positives = 388/643 (60%), Gaps = 52/643 (8%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +VTD L+D F + + SVRVC+D +T RS YGYVN+ + DA RA+++
Sbjct: 33 SLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALDM 92
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T L+GK +RI +S RDP R+SG AN+F+KNL ++IDN L + F FG I+SCK+A
Sbjct: 93 LNFTPLNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAILSCKIA 152
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQF+ EESA A + LNG + DK++YVG F++K +R + K+ N
Sbjct: 153 TDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERESATNKTKFNN 212
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL T+E L F ++G I S ++ +D +G S+ FGFVNF+N DDA R++EA+N
Sbjct: 213 VYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARSVEALN 272
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y +AQKK ERE L+ +FE+ KE + K++G N+YVKN+DD + D++L+
Sbjct: 273 GKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIADDKLRE 332
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS+ GTITS KVMRD GI++G GFV FS+ EEAS+A+ +G M+ KPLYVA+AQRK
Sbjct: 333 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKMVASKPLYVALAQRK 392
Query: 373 EDRQAHLQLQYAQH----MAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGL 423
EDR+A LQ Q++Q MA G ++ P G P L Y PP + +PP+PG
Sbjct: 393 EDRRARLQAQFSQMRPAAMAPSVGPRMSMYPPGAPGLGQQLFYGQGPPAL---IPPQPGF 449
Query: 424 MYQPL---GLRTGW--RANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHY 478
YQ G+R G N FVP +P + N++ GR + G
Sbjct: 450 GYQHQLVPGMRPGAAPMPNFFVPMVQPG----------QPNQRPGGR-------RSGTGP 492
Query: 479 MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP----- 533
+QQ+ Q + + G+ P GR GV G ++ MA P
Sbjct: 493 VQQTQQPLPLMQQQMLPR--GRVYRYPPGRNMADVPIPGVPGGMLSAPYDMAGMPFRDAA 550
Query: 534 -------DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLL 586
L LA P+QQ+ +LGE LYPLV++ + ++ AK+TGMLLEMD +E+L L
Sbjct: 551 VSQPMPIGALATALANAPPDQQRTLLGENLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHL 610
Query: 587 LESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
LESPE+L KV EA++VL+ V+ Q+A +P A +++N
Sbjct: 611 LESPEALKAKVAEAMEVLR----NVAQQQANNPTDRMASLSLN 649
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 103/188 (54%), Gaps = 17/188 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +L+S+VT+ HL + F + G + S+ + RD S G+G+VN+ N DA RAL+
Sbjct: 32 TSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALD 91
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N + + K + + + F R I + +N+++KN+D + ++
Sbjct: 92 MLNFTPLNGKPIR-------------IMYSF---RDPSIRRSGTANIFIKNLDKAIDNKA 135
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S K+ D G +KG+GFV F + E A A + +G +L+ K +YV
Sbjct: 136 LYDTFSTFGAILSCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPF 195
Query: 370 QRKEDRQA 377
RK++R++
Sbjct: 196 VRKQERES 203
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEAS 348
++ +++YV +++ +VTD L F Q G + S +V RD + G+G+V + + ++A+
Sbjct: 28 QFVSTSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAA 87
Query: 349 KAVNTFHGYMLHRKPLYVAIAQR 371
+A++ + L+ KP+ + + R
Sbjct: 88 RALDMLNFTPLNGKPIRIMYSFR 110
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 277/624 (44%), Positives = 381/624 (61%), Gaps = 43/624 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRGRMN 467
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRG--- 476
Query: 468 GNMLPQVGAHY-MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
LP + + Q+ A + + Y +R + +
Sbjct: 477 ---LPTTAQRVGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAV 533
Query: 527 GVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLL 586
V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +
Sbjct: 534 HVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHM 592
Query: 587 LESPESLAVKVEEAVQVLKLSEAK 610
LESPESL KV+EAV VL+ AK
Sbjct: 593 LESPESLRSKVDEAVAVLQAHHAK 616
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/648 (41%), Positives = 389/648 (60%), Gaps = 51/648 (7%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P T SLYVGDL +VTD +L+D F++ + SVRVC+D +T RS YGYVN+ +P+D
Sbjct: 32 PGGLTSTSLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPND 91
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA+E+ N T ++GK +R+ +S RDP RKSG AN+F+KNL +SIDN L + F +FGN
Sbjct: 92 ASRAMEMLNFTPVNGKSIRVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGN 151
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCK+AT +G+SKG+GFVQ++ EESA AI+ LNG + DK++YVG F++K +R +
Sbjct: 152 ILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTT 211
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
K+ N+++KNL T++ L + F +FG I S ++ RD +G S+ FGF+NF+ +DA
Sbjct: 212 GMTKFQNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAA 271
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+E++NG K Y +AQKK+EREQ L+ +FE+ KE + KY+G N+YVKN+DD +
Sbjct: 272 KAVESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTI 331
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE+LK FS+ GTITS KVMRD GI++G GFV FS+ EEAS+A++ +G M+ KPLY
Sbjct: 332 DDEKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLY 391
Query: 366 VAIAQRKEDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQ 416
VA+AQRKE+R+A LQ Q++Q M + P G P + Y PP +
Sbjct: 392 VALAQRKEERRAKLQAQFSQLRPVAMPPSLAPRMPIYPPGAPGIGQQLFYGQGPPAM--- 448
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSP---LPVNPKHNRQNRGRMNGNMLPQ 473
+PP+ G YQ VP RP P +P+ + + R P
Sbjct: 449 IPPQAGFGYQ----------QQLVPGMRPGGAPMPNFFMPLVQQGQQGQRPGGRRGAGP- 497
Query: 474 VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT----FNSGGVM 529
Q +Q +G +Y P GR GV G ++ GG++
Sbjct: 498 ------VQQTQQPMPLMQQQMLPRGRMYRY-PPGRNGPEGPMPGVPGGMLSVPYDMGGML 550
Query: 530 ARKPDM--------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNS 581
R M L LA PEQQ+ +LGE LYPLV++ + + AK+TGMLLEMD +
Sbjct: 551 PRDSAMGQPMPISTLASALANAPPEQQRTMLGESLYPLVDQLEHEHAAKVTGMLLEMDQT 610
Query: 582 ELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
E+L LLESPE+L KV EA++VL+ + Q+ +P A +++N
Sbjct: 611 EVLHLLESPEALKAKVAEAMEVLR------NVQQTTNPADQLASLSLN 652
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 271/615 (44%), Positives = 377/615 (61%), Gaps = 37/615 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+T++ L E F K+G I S + ++G SRGFGFV F++PD A +A+
Sbjct: 191 FTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG V K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM +E G +KGFGFVCFS+PEEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE----------GSSANVIPSGYPSLYYTTPPGIVSQVP 418
AQRKEDR+AHL QY Q +A + G + N P P ++Q+
Sbjct: 370 AQRKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIR 429
Query: 419 PRPGLMYQPLGLRTGWR--ANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
P QP +R + ++GF P F+ +P + R ++ + VG
Sbjct: 430 TTPRWPAQPNQVRPNAQTGSSGFATMQGP-FRAAPRAPTAQPGAM-RSTLSARPITAVGV 487
Query: 477 HYMQQSSQSAASS-KDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM 535
S+QS S+ K +SN + Q+ +P + + ++P +
Sbjct: 488 -----SAQSRPSNYKYTSNMRNPPQAMAIP------------TPTPVQQAVHIQGQEP-L 529
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE ESL
Sbjct: 530 TASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKA 589
Query: 596 KVEEAVQVLKLSEAK 610
KVEEAV VL+ +AK
Sbjct: 590 KVEEAVAVLQAHQAK 604
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 17/196 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L SD+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R+ LR K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++ ++ + FS G I S KV +DE G++KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKK 168
Query: 364 LYVAIAQRKEDRQAHL 379
+YV +++R+ L
Sbjct: 169 VYVGKFIPRKEREKEL 184
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 259/608 (42%), Positives = 376/608 (61%), Gaps = 23/608 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDL +V +G+LFD FS+ + S+RVC+D S Y YVNF +P DA A+E
Sbjct: 33 SSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAME 92
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+ N T L+GK +RI S RDP RKSG AN+F+KNL SIDN LQE F +FG+++SCKV
Sbjct: 93 LLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGSVLSCKV 152
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A +G+SKG+GFVQFE EE+A +AI LNG + DK ++VGRF++ +R+ + + K+T
Sbjct: 153 AVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQERIEATGSPKFT 212
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL ++E L + FS +G I S ++ +D++G S+GFGFVNF +PD A A+E +
Sbjct: 213 NVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKL 272
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG+ KV Y RAQ+K ERE L+ +FE++R R K K +N+Y+KN+DD + DE+LK
Sbjct: 273 NGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLK 332
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS+ G+ITS KVM D++G++KG GFV FS+PEEAS+A+N +G M+ +KPLYVA+AQR
Sbjct: 333 ELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQR 392
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP----------PGIVSQVPPRP 421
+E+R+A LQ + Q I+ + +PSG P + P G +PP+P
Sbjct: 393 REERKARLQAHFTQ----IQAPGLSPMPSGLPGYHPGAPRLAPQQLFFGQGTAGMMPPQP 448
Query: 422 ---GLMYQPL-GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAH 477
G Q L G+R G N +P + + ++ L +
Sbjct: 449 AGYGFQQQLLPGMRAGVGPNFVMPYQMQRQGQQGQRMGIRRGGNHQQIQQQQQLLHRNTN 508
Query: 478 YMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLN 537
+ +A + DSS +G VP + SG+ + ++ L
Sbjct: 509 QGLRYMGNARNGIDSSAAPQGFVGPVVPFPF-----EASGMPVTPSDAQRTAPVPISALT 563
Query: 538 GMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
LA+ +PE++ +LGE+LYPLVE+ +PD VAK+TGMLLEMD +E+L L+ESP++L KV
Sbjct: 564 TALASATPEKRMVMLGEQLYPLVERLEPDQVAKVTGMLLEMDQTEVLHLIESPDALKKKV 623
Query: 598 EEAVQVLK 605
EA+QVL+
Sbjct: 624 AEAMQVLQ 631
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEAS 348
++ S++YV +++ +V + +L FSQ + S +V RD+ + + G+ +V FS+P++AS
Sbjct: 29 QFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAS 88
Query: 349 KAVNTFHGYMLHRKPLYVAIAQR 371
A+ + L+ K + + ++ R
Sbjct: 89 NAMELLNFTPLNGKAIRIMVSHR 111
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/630 (43%), Positives = 374/630 (59%), Gaps = 55/630 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+AHL QY Q +AG+ AN I++Q P G + P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPAN---------------AILNQFQPAAGGYFVPAV 413
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG---------NMLPQVGAHYMQ 480
+ R PP Q++ + NP+ Q GR G P+ ++
Sbjct: 414 PQAQGR-----PPYYTPNQLAQMRPNPRW--QQGGRPQGFQGMPSAIRQSGPRPTLRHLA 466
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD------ 534
+ + AS + Q+ G V N R + R P
Sbjct: 467 PTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 526
Query: 535 --------------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
+ MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DN
Sbjct: 527 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 586
Query: 581 SELLLLLESPESLAVKVEEAVQVLKLSEAK 610
SELL +LESPESL KV+EAV VL+ AK
Sbjct: 587 SELLHMLESPESLRSKVDEAVAVLQAHHAK 616
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/630 (43%), Positives = 374/630 (59%), Gaps = 55/630 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+AHL QY Q +AG+ AN I++Q P G + P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPAN---------------AILNQFQPAAGGYFVPAV 413
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG---------NMLPQVGAHYMQ 480
+ R PP Q++ + NP+ Q GR G P+ ++
Sbjct: 414 PQAQGR-----PPYYTPNQLAQMRPNPRW--QQGGRPQGFQGMPSAIRQSGPRPTLRHLA 466
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD------ 534
+ + AS + Q+ G V N R + R P
Sbjct: 467 PTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 526
Query: 535 --------------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
+ MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DN
Sbjct: 527 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 586
Query: 581 SELLLLLESPESLAVKVEEAVQVLKLSEAK 610
SELL +LESPESL KV+EAV VL+ AK
Sbjct: 587 SELLHMLESPESLRSKVDEAVAVLQAHHAK 616
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 278/626 (44%), Positives = 380/626 (60%), Gaps = 36/626 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 131 AQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+T++ L E F K+G I S + ++G SRGFGFV F++PD A +A+
Sbjct: 191 FTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVL 250
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG I K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM +E G +KGFGFVCFS PEEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRKEFTPFGTITSAKVMMEE-GRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSS-ANVIPSGYPSLYY--TTP-------PGIVSQVP 418
AQRKEDR+AHL QY Q MA + + G Y+ T P P ++Q+
Sbjct: 370 AQRKEDRKAHLASQYMQRMANVRMQQMGQIFQPGNAGSYFVPTLPQPQRFYGPAQMAQIR 429
Query: 419 PRPGLMYQPLGLRTGWRA--NGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ--- 473
P QP +R + +GF + Q +P P+ G + +M +
Sbjct: 430 ATPRWPAQPNQVRPNAQTGNSGFA-----SMQSAPFRAAPRAPAAQAGALRNSMSARPIT 484
Query: 474 ----VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGR-----IRELNKGSGVSLGTFN 524
VG MQ S + + S Q + KY N R L SG S+
Sbjct: 485 GQQAVGGANMQSRSMAGPAVGVSPGQSRPPNYKYTANMRNPPQTAMALPAPSGPSVQ--Q 542
Query: 525 SGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELL 584
+ + ++P + MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL
Sbjct: 543 AVHIQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQCMYPSLTGKITGMLLEIDNSELL 601
Query: 585 LLLESPESLAVKVEEAVQVLKLSEAK 610
+LE ESL KVEEAV VL+ +AK
Sbjct: 602 HMLEHNESLKAKVEEAVAVLQAHQAK 627
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 17/196 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L +D+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R+ LR K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++ ++ + FS G I S KV +DE G +KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKK 168
Query: 364 LYVAIAQRKEDRQAHL 379
+YV +++R+ L
Sbjct: 169 VYVGKFIPRKEREKEL 184
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/630 (43%), Positives = 375/630 (59%), Gaps = 55/630 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+AHL QY Q +AG+ AN I++Q P G + P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPAN---------------AILNQFQPAAGGYFVPAV 413
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG---------NMLPQVGAHYMQ 480
+ R PP Q++ + NP+ Q GR G P+ ++
Sbjct: 414 PQAQGR-----PPYYTPNQLAQIRPNPRW--QQGGRPQGFQGMPSAIRQSGPRPALRHLA 466
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD------ 534
+ + AS + Q+ G V N R + R P
Sbjct: 467 PTGNAPASRGLPTTAQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 526
Query: 535 --------------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
+ MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DN
Sbjct: 527 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 586
Query: 581 SELLLLLESPESLAVKVEEAVQVLKLSEAK 610
SELL +LESPESL KV+EAV VL+ AK
Sbjct: 587 SELLHMLESPESLRSKVDEAVAVLQAHHAK 616
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 281/644 (43%), Positives = 380/644 (59%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+AN AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAL-----RQSGPRPALRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + + Q GG VPN R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRAVAPYKY 525
Query: 527 GVMARKPD--------------------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPD 566
R P + MLAA P++QKQ+LGERL+PL++ +
Sbjct: 526 ASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 273/631 (43%), Positives = 380/631 (60%), Gaps = 57/631 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ + L E FSK+GK S+ + D +G S+GFGFV+F+ +DA +A+E
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSP+EA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+AHL QY Q +AG+ AN I++Q P PG + P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRALPANT---------------IINQFQPTPGGYFMPAV 413
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG-----NMLPQVGA----HYMQ 480
+ R PP Q++ + NP+ Q GR G N + Q G ++
Sbjct: 414 PQAQNR-----PPYYAPNQIAQMRPNPRW--QQGGRPQGFQGVPNTIRQSGPCPALRHLT 466
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPN---------------------GRIRELNKGSGVS 519
+S + AS + Q+ G V N +R +
Sbjct: 467 PASNTQASRGLPTTPQRVGVPTAVQNLSPRPSVATPAPRAVPPYKYAANVRSPHPAIQPL 526
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+D
Sbjct: 527 QTPQPAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEID 585
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
NSELL +LESPESL KVEEAV VL+ AK
Sbjct: 586 NSELLHMLESPESLRSKVEEAVAVLQAHHAK 616
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 273/631 (43%), Positives = 380/631 (60%), Gaps = 57/631 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ + L E FSK+GK S+ + D +G S+GFGFV+F+ +DA +A+E
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSP+EA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+AHL QY Q +AG+ AN I++Q P PG + P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRALPANT---------------IINQFQPTPGGYFMPAV 413
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG-----NMLPQVGA----HYMQ 480
+ R PP Q++ + NP+ Q GR G N + Q G ++
Sbjct: 414 PQAQNR-----PPYYAPNQIAQMRPNPRW--QQGGRPQGFQGVPNTIRQSGPRPALRHLT 466
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPN---------------------GRIRELNKGSGVS 519
+S + AS + Q+ G V N +R +
Sbjct: 467 PASNTQASRGLPTTPQRVGVPTAVQNLSPRPSVATPAPRAVPPYKYAANVRSPHPAIQPL 526
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ V ++P + MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+D
Sbjct: 527 QTPQPAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEID 585
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
NSELL +LESPESL KVEEAV VL+ AK
Sbjct: 586 NSELLHMLESPESLRSKVEEAVAVLQAHHAK 616
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/630 (43%), Positives = 373/630 (59%), Gaps = 55/630 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+AHL QY Q AG+ AN I++Q P G + P
Sbjct: 369 QRKEERKAHLTNQYMQREAGMRALPAN---------------AILNQFQPAAGGYFVPAV 413
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG---------NMLPQVGAHYMQ 480
+ R PP Q++ + NP+ Q GR G P+ ++
Sbjct: 414 PQAQGR-----PPYYTPNQLAQMRPNPRW--QQGGRPQGFQGMPSAIRQSGPRPTLRHLA 466
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD------ 534
+ + AS + Q+ G V N R + R P
Sbjct: 467 PTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 526
Query: 535 --------------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
+ MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DN
Sbjct: 527 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 586
Query: 581 SELLLLLESPESLAVKVEEAVQVLKLSEAK 610
SELL +LESPESL KV+EAV VL+ AK
Sbjct: 587 SELLHMLESPESLRSKVDEAVAVLQAHHAK 616
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 283/648 (43%), Positives = 383/648 (59%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+AN AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG VPN R +
Sbjct: 480 TAQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRAVA 537
Query: 523 FNSGGVMARKPD--------------------MLNGMLAAPSPEQQKQILGERLYPLVEK 562
R P + MLAA P++QKQ+LGERL+PL++
Sbjct: 538 PYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 283/648 (43%), Positives = 383/648 (59%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+AN AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG VPN R +
Sbjct: 480 TAQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRAVA 537
Query: 523 FNSGGVMARKPD--------------------MLNGMLAAPSPEQQKQILGERLYPLVEK 562
R P + MLAA P++QKQ+LGERL+PL++
Sbjct: 538 PYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 278/648 (42%), Positives = 387/648 (59%), Gaps = 56/648 (8%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T R + Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP R+SGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTASAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DDD+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PS 404
KPLYVA+AQRKE+RQAHL +Y Q MA + VI PSGY +
Sbjct: 361 KPLYVALAQRKEERQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ-- 461
YY PP ++Q+ P P W A G RP FQ P + P R
Sbjct: 421 AYY--PPSQIAQLRPSP-----------CWTAQG----ARPHPFQNKPSAIRPAAPRVPF 463
Query: 462 NRGRMNGNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RE 511
+ R + +P+V + S+Q+ ++ + VP + +
Sbjct: 464 STMRPTSSQVPRVMSTQRVANTSTQTVGPRPAAAAAAATPAVRTVPRYKYAAGVRNPQQH 523
Query: 512 LNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
LN V T V + + L MLA+ P++QKQ+LGERL+ ++ P L K
Sbjct: 524 LNAQPQV---TMQQPAVHVQGQETLTASMLASAPPQEQKQMLGERLFRPIQAMHPTLAGK 580
Query: 571 ITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
ITGMLLE+DNSELL +LES +SL KV+EAV VL+ + K +TQ+A++
Sbjct: 581 ITGMLLEIDNSELLHMLESSQSLRSKVDEAVAVLQAHQVKEATQKAVN 628
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/630 (43%), Positives = 374/630 (59%), Gaps = 55/630 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+AHL QY Q +AG+ AN I++Q P G + P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPAN---------------AILNQFQPAAGGYFVPAV 413
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG---------NMLPQVGAHYMQ 480
+ R PP Q++ + NP+ Q GR G P+ ++
Sbjct: 414 PQAQGR-----PPYYTPNQLAQMRPNPRW--QQGGRPQGFQGMPSAIRQSGPRPTLRHLA 466
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD------ 534
+ + AS + Q+ G V N R + R P
Sbjct: 467 PTGNAPASRGLPTTAQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 526
Query: 535 --------------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
+ MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DN
Sbjct: 527 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 586
Query: 581 SELLLLLESPESLAVKVEEAVQVLKLSEAK 610
SELL +LESPESL KV+EAV VL+ AK
Sbjct: 587 SELLHMLESPESLRSKVDEAVAVLQAHHAK 616
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 278/638 (43%), Positives = 375/638 (58%), Gaps = 55/638 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF+ FS ++ S+RVC+D T RS Y YVNF + DA RA++
Sbjct: 2 ASLYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL SIDN + + F FGNI+SCKV
Sbjct: 62 TMNFDILKGRPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
A E G+SKG+GFV FE E+SA +IE +NG + K+++VGRF+ + DR L A
Sbjct: 122 AQDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
YTN+++KN+D +V ++ L E F K+G I S + ++G+SRGFGFV F++P++A +A+
Sbjct: 182 YTNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVT 241
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
++G K Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 242 ELHGKESPEGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQGVNLYVKNLDDTIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM D+ G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 302 RLRKEFSVFGTITSAKVMMDD-GRSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYVAL 360
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGY-------PSLYYTTPPGIVSQ 416
AQRKEDR+AHL QY Q + S I SGY P +Y P ++Q
Sbjct: 361 AQRKEDRKAHLDSQYLQRNTNMRMQSIGPIYQPGASSGYFVPTIPQPQRFYG--PTQMTQ 418
Query: 417 VPPRPGLMYQPL--------------GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQN 462
+ P+P QP + T +R G P PA Q + L N +R
Sbjct: 419 IRPQPRWASQPQVRAGTPQAAAAGYPNMATQYRNIGARAPV-PAGQQAALARNAMVDRNA 477
Query: 463 RGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
R P A + +A + + G KY N R G +G
Sbjct: 478 R--------PISTAQQQMPGAVAAGGVRVPGARGTGSGYKYTANMRN---PPGQAQGMGQ 526
Query: 523 FNSGG----------VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKIT 572
G V ++P + MLA PE QKQ+LGERL+PL+++ P+L KIT
Sbjct: 527 AQPGQPPAPVQAAVHVHGQEP-LTATMLATAKPEDQKQMLGERLFPLIQRMYPELTGKIT 585
Query: 573 GMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
GMLLE+DNS+LL +LE ESL KVEE V VL+ +A+
Sbjct: 586 GMLLEIDNSDLLHMLEHHESLKNKVEEVVAVLQAHQAQ 623
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 273/614 (44%), Positives = 369/614 (60%), Gaps = 30/614 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL PD+T+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 12 ASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN + + F FGNI+SCKV
Sbjct: 72 TMNFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKV 131
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA--K 189
A E G SKG GFV FET+E+A+ A+ +NG + K++YVGRF+ +S+R+ A +
Sbjct: 132 AQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRSERLAAMGEAQKR 191
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ L + F K+GK+ S + D+ G SRGFGFV+++ PD A +A E
Sbjct: 192 FTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACE 251
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
MN V + +Y RAQKKAER+ L+ +FE+ ++ERI +Y+G N+YVKN+D + +E
Sbjct: 252 EMNDMEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQRYQGVNLYVKNLDSTIDEE 311
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FSQ GTITS+KVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 312 ILRKEFSQFGTITSSKVM-TENGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVAL 370
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPR--PGLMYQ 426
AQRKEDR+A L QY Q MAG+ +P+ P+ + + + PR P M Q
Sbjct: 371 AQRKEDRKAQLASQYMQRMAGMR------MPAPQPNQMFQGSSYFMPSMQPRYFPSQMAQ 424
Query: 427 PLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQ--------NRGRMNGNMLPQVGAHY 478
+ W+ P RP Q + P + + PQ A
Sbjct: 425 -VRASPRWQQ---AAPMRPGGQATAFQAMPAAGSRFPAATAPRAAAAAVRQVAPQAMART 480
Query: 479 MQQSSQSAASSKDS-SNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLN 537
Q +Q A + +NQQ KY R N SG N V + + L
Sbjct: 481 TQPPAQRMAGRVAAMANQQPRPGYKYTATMR----NPPSGGQPQAMNPSAVHVQGQEPLT 536
Query: 538 G-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
MLAA P++QKQ+LGERL+PL++ PDL KITGMLLE+DN+ELL +LES ESL K
Sbjct: 537 STMLAAAPPQEQKQMLGERLFPLIQNSHPDLAGKITGMLLEIDNAELLHMLESRESLKAK 596
Query: 597 VEEAVQVLKLSEAK 610
VEEAV VL+ +AK
Sbjct: 597 VEEAVAVLQAHQAK 610
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P +L++ +LD D+TE L EKFS G + S+ + RD S G+ +VNF P DA
Sbjct: 7 PTYPCASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADA 66
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN I K + +I+ Q R + K NV++KN+D
Sbjct: 67 ERALDTMNFDTIKGKPM------------RIMWSQ----RDPSLRKSGVGNVFIKNLDKS 110
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ + FS G I S KV +DE G +KGFGFV F + E A +A+ +G ML+ K +
Sbjct: 111 IDNKAIYDTFSAFGNILSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKV 170
Query: 365 YV 366
YV
Sbjct: 171 YV 172
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 273/624 (43%), Positives = 385/624 (61%), Gaps = 34/624 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS ++ S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G S+G+GFV FET ++A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARARE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FSKFG S+ + DE+G RGFGFV+F+N +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++++ RAQKK ER+ L+ +FE+ +++R +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG--IVSQVP--------- 418
QRKE+RQAHL QY Q +A ++ V+ + Y PP I++ +P
Sbjct: 369 QRKEERQAHLITQYMQRVANARAAANPVM-----NPYQPAPPSGFIMTAIPQAQSRSAYY 423
Query: 419 PRPGLMYQPLGLRTG--WRANGFVPPTRPAFQVSP---LPVNPKHNRQNRGRMNGNMLPQ 473
P G M Q LR G W P FQ P P P+ + R + + P
Sbjct: 424 PTAGQMAQ---LRPGPRWTTQSVRPQH---FQNMPGVMRPPRPRPQNFSTVRASSQVPPM 477
Query: 474 VGAHYM-QQSSQSAASSKDSSNQQKGG-QSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
+ + QSS ++ +GG Q KY R + + + + + + +
Sbjct: 478 MNTQRVAAQSSGPRHPVATAATHVRGGPQYKYSTGVRNPQQHVATQPQVTLQPAVHIQGQ 537
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
+P + MLAA ++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LESPE
Sbjct: 538 EP-LTASMLAAAPLQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPE 596
Query: 592 SLAVKVEEAVQVLKLSEAKVSTQE 615
SL KV+EAV VL+ +AK Q+
Sbjct: 597 SLRSKVDEAVAVLQAHQAKEVAQK 620
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 161/296 (54%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPGAPSYPIASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGQPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG SRG+GFV+F+ D A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + E +NVY+KN +D+ DE+LK FS+ G TS +VM DE
Sbjct: 177 KEREAELGARARE----------FTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +GFGFV F + E+A KAV+ +G L+ + ++V AQ+K +RQ L+ ++ Q
Sbjct: 227 SGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQ 282
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 271/630 (43%), Positives = 374/630 (59%), Gaps = 55/630 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+AHL QY Q +AG+ AN I++Q P G + P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPAN---------------AILNQFQPAAGGYFVPAV 413
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG---------NMLPQVGAHYMQ 480
+ R PP Q++ + NP+ Q GR G P+ ++
Sbjct: 414 PQAQGR-----PPYYTPNQLAQMRPNPRW--QQGGRPQGFQGMPSAIRQSGPRPTLRHLA 466
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD------ 534
+ + AS + Q+ G V N R + R P
Sbjct: 467 PTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 526
Query: 535 --------------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
+ MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DN
Sbjct: 527 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 586
Query: 581 SELLLLLESPESLAVKVEEAVQVLKLSEAK 610
SELL +LESPESL KV+EAV VL+ AK
Sbjct: 587 SELLHMLESPESLRSKVDEAVAVLQAHHAK 616
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 269/617 (43%), Positives = 381/617 (61%), Gaps = 37/617 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD+T+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F K+GK S+ + D +G SRGFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG+ + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM +E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI------PSGY--PSL--------YYTTPPGI 413
QRKE+R+AHL QY Q +AG+ AN I SGY P++ YY P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRTTYYA--PNQ 426
Query: 414 VSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ 473
++Q+ P P Q + G++A P+ P P+ N ++ + P+
Sbjct: 427 LAQMRPNPRWQQQGGRSQGGFQA-------MPSSLRQP---GPRANLRHMSPSSSTQGPR 476
Query: 474 VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP 533
G M S + K PN ++ + ++L + +
Sbjct: 477 AGGQSMGPRPSVGVSGPRAMPPYKYATGVRNPNPQVVQ-----PIALQQTQPAVHVQGQE 531
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
+ MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LES ESL
Sbjct: 532 PLTASMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESL 591
Query: 594 AVKVEEAVQVLKLSEAK 610
KVEEAV VL+ +AK
Sbjct: 592 RSKVEEAVAVLQAHQAK 608
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ D+T+ L FS G + S +V RD I + G+ +V FS P +A
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFSQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVVKGKPIRIMWSQR 89
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/618 (44%), Positives = 375/618 (60%), Gaps = 44/618 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL V D +LFD F++ + SVRVC+D TT +S Y YVN+ +P DA RA+E+
Sbjct: 35 SLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALEM 94
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++G+ +RI +S RDP RKSG AN+F+KNL +SIDN L + F FGNI+SCKVA
Sbjct: 95 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVA 154
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQ+E +E+A+AAIE LNG + DK++YVG FI+K +R K+ N
Sbjct: 155 TDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDNSPGNVKFNN 214
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL TE+ L E F KFG I S+++ R+ +G S+ FGFVNF++PD+A A++ +N
Sbjct: 215 VFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLN 274
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y RAQKK+ERE L+ +FE+ +E KY+ +N+Y+KN+DD V DE+L+
Sbjct: 275 GKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQNTNLYLKNLDDTVDDEKLRE 334
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F++ G ITS KVMRD G ++G GFV F S E+AS+A+ + M+ KPLYVA+AQRK
Sbjct: 335 LFAEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVALAQRK 394
Query: 373 EDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPS----LYYTTPPGIVSQVPPRPGLM 424
EDR+A LQ Q++Q MA G + P G P L+Y PP + P+PG
Sbjct: 395 EDRKARLQAQFSQLRPVPMAPTVGPRMAMFPPGVPGVGQQLFYGQPPPAF--INPQPGFG 452
Query: 425 Y-QPL--GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQ 481
+ QPL G+R G F+ P Q P P R G M +M M Q
Sbjct: 453 FQQPLMPGMRPGAPMPNFM---MPMVQQGQQPQRPSGRRAGTGGMQQSMP-------MGQ 502
Query: 482 SSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT---FNSGGVMAR-----KP 533
A +GG+ P GR GV G + GG+ R +P
Sbjct: 503 QQMIA----------RGGRGYRYPTGRGMPDPAMHGVGGGMPSPYEIGGMPMRDAGASQP 552
Query: 534 DMLNGM---LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
+ + LA P+QQ+ +LGE LYPLV++ + D AK+TGMLLEMD +E+L LLESP
Sbjct: 553 VPIGALATALANAPPDQQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESP 612
Query: 591 ESLAVKVEEAVQVLKLSE 608
++L KV EA++VL+ ++
Sbjct: 613 DALKAKVAEAMEVLRSAQ 630
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 270/631 (42%), Positives = 378/631 (59%), Gaps = 42/631 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D+ T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP R+SGV N+F+KNL ++IDN + + F FGNI+SC+V
Sbjct: 71 TMNFDIIKGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCRV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI + +R L A
Sbjct: 131 AQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFISRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+T++ L E F K+G I S + ++G SRGFGFV F++P+ A RA+
Sbjct: 191 FTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVA 250
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG I K++Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 DLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITS KVM E G +KGFGFVCFS EEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRKEFAPFGTITSVKVMM-EDGRSKGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE-----------GSSANVIPS-GYPSLYYTTPPGIVSQ 416
AQRKEDR+AHL QY Q +A I G+ + +P+ P +Y P ++Q
Sbjct: 370 AQRKEDRKAHLASQYLQRVANIRMQHMGQVFQAGGAGSYFVPTLPQPQRFYG--PAQMAQ 427
Query: 417 VPPRPGLMYQPL------------GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRG 464
+ P QP+ ++T +RA P + + + L P +Q
Sbjct: 428 IRTTPRWPAQPVRPNAQAAGSNFATMQTPFRAAPRAPTAQSSMARNALSARPITGQQ--- 484
Query: 465 RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFN 524
+P GA MQ S A + S Q + KY N R
Sbjct: 485 -----AVP--GAANMQNRSM-AGPAVGVSPQSRTSNYKYTANMRNPPQTMAMPAQTPAQQ 536
Query: 525 SGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELL 584
+ + ++P + MLA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL
Sbjct: 537 AVHIQGQEP-LTASMLADAPPQEQKQMLGERLFPLIQCMYPHLTGKITGMLLEIDNSELL 595
Query: 585 LLLESPESLAVKVEEAVQVLKLSEAKVSTQE 615
+LE ESL KVEEAV VL+ +AK + ++
Sbjct: 596 HMLEHGESLKAKVEEAVAVLQAHQAKQAVKK 626
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 107/196 (54%), Gaps = 17/196 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L SD+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R+ LR + NV++KN+D
Sbjct: 65 AERALDTMNFDIIKGRPIRIMWSQ----RDPSLR------------RSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++ ++ + FS G I S +V +DE G +KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKK 168
Query: 364 LYVAIAQRKEDRQAHL 379
+YV +++R+ L
Sbjct: 169 VYVGKFISRKEREKEL 184
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 269/615 (43%), Positives = 375/615 (60%), Gaps = 41/615 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ + L E FSK+GK S+ + D +G S+GFGFV+F+ +DA +A+E
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSP+EA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+AHL QY Q +AG+ AN I++Q P PG + P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRALPANT---------------IINQFQPTPGGYFMPAV 413
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG-----NMLPQVGA-----HYM 479
+ R PP Q++ + NP+ Q GR G N + Q G H
Sbjct: 414 PQAQNR-----PPYYAPNQIAQMRPNPRW--QQGGRPQGFQGVPNTIRQSGPRPALRHLT 466
Query: 480 QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGG----VMARKPDM 535
+A + + VP + + ++ + V ++P +
Sbjct: 467 PARVPTAVQNLSPRPSVATPAPRAVPPYKYAANVRSPHPAIQPLQTPQPAVHVQGQEP-L 525
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL
Sbjct: 526 TASMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSELLHMLESPESLRS 585
Query: 596 KVEEAVQVLKLSEAK 610
KVEEAV VL+ AK
Sbjct: 586 KVEEAVAVLQAHHAK 600
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 269/638 (42%), Positives = 377/638 (59%), Gaps = 62/638 (9%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T SLYVGDL VTD +L+D F++ + SVRVC+D +TGRS YGYVN+ + DA RA
Sbjct: 38 TTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRA 97
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
I+V N T L+ K +R+S S RDP RKSG N+F+KNL +SID L E F +FG IISC
Sbjct: 98 IDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISC 157
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
K+AT G+SKG+GFVQ+++EE+A AI+ LNG + DK++YVG F++K DR K
Sbjct: 158 KIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTK 217
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+ N+++KNL +E+ L + F ++G I S+++ RD +G S+ FGFVNF+NP+DA +A++
Sbjct: 218 FNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVD 277
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
A+NG K Y +AQKK+ERE L+ +FE+ KE++ KY+G N+YVKN+DD + DE+
Sbjct: 278 ALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEK 337
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS+ GTITS KVMRD GI++G GFV FS+PEEAS+A+ +G M+ KPLYVA+A
Sbjct: 338 LKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALA 397
Query: 370 QRKEDRQAHLQLQYAQH----MAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPR 420
QRKE+R+A LQ Q++Q M G + G P + Y PP +++ P+
Sbjct: 398 QRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIA---PQ 454
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQ 480
G YQ VP RP G M +P V
Sbjct: 455 AGFGYQ----------QQLVPGMRPG----------------GGPMPNFFMPMVQQGQQG 488
Query: 481 QSSQSAASSKDSSNQQKG---GQSKYVPNGRIRELNKGSGVSLGT------------FNS 525
Q + + Q+ + +P GR+ G V T +N
Sbjct: 489 QRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNM 548
Query: 526 GGVMARKPDM--------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE 577
GG++ R+ M L LA +QQ+ +LGE LYPLV++ + D AK+TGMLLE
Sbjct: 549 GGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLE 608
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVLK-LSEAKVSTQ 614
MD +E+L LLESP++L KV EA+ VL+ +S+ V+ Q
Sbjct: 609 MDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQ 646
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEAS 348
++ +++YV ++D VTD +L F+Q G + S +V RD G + G+G+V +S+ ++A+
Sbjct: 36 QFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDAT 95
Query: 349 KAVNTFHGYMLHRKPLYVAIAQR 371
+A++ + L+ K + V++++R
Sbjct: 96 RAIDVLNFTPLNNKTIRVSVSRR 118
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 268/619 (43%), Positives = 381/619 (61%), Gaps = 20/619 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA--AK 189
E G S+G+GFV FET+E+AN AI+ +NG + D++++VG F + +R L A +
Sbjct: 131 VCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E FS FG S+ + D+ G SRGFGFVN+ N ++A++A+
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +++Y RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + D+
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+A L QY Q +A + ++ S Y P + Q P R P+
Sbjct: 369 QRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLP--AMPQPPNRTFYSPNPVA 426
Query: 430 -LRTG--WRANGFVPPTR--PAFQVSPLPVNPKHNRQNRGRMN--GNMLPQVGAHYMQQS 482
+R W ++ PP PA + +P P+ N M +P+V H + +
Sbjct: 427 PVRQAPQWTSHQSRPPQYQPPAPLMRAVP--PRRMSSNISTMKQASTQVPRVAPHSQRVA 484
Query: 483 ---SQSAASSKDSSNQQKGGQSKYVPNGRIRELNK-GSGVSLGTFNSGGVMARKPDMLNG 538
+Q+A + + Y + +R + G+ L V+ + + L
Sbjct: 485 NIGTQTAGARAQVNPSIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAVLMQGQEPLTA 544
Query: 539 -MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
LA+ P++QKQ+LGERLYPL+ + P L KITGMLLE+DNSELL +LESPESL KV
Sbjct: 545 SSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKV 604
Query: 598 EEAVQVLKLSEAKVSTQEA 616
EEAV VL+ +AK ++Q++
Sbjct: 605 EEAVAVLQAHQAKENSQKS 623
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD + G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ +P+ + +QR
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQR 89
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/644 (43%), Positives = 377/644 (58%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPTLRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + + Q GG V N R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKY 525
Query: 527 GVMARKPDMLNGMLAAPS--------------------PEQQKQILGERLYPLVEKHKPD 566
R P L AP P++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 269/636 (42%), Positives = 384/636 (60%), Gaps = 42/636 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY+GDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA--AK 189
E G S+G+GFV FET E+AN AI+ +NG + D++++VG F + +R L A +
Sbjct: 131 VCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E FS FG S+ + D++G SRGFGFVN+ N ++A++A+
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +++Y RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + D+
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q +A + ++ S P+ Y+ +S +P P
Sbjct: 369 QRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYF------LSAMPQPPN------ 416
Query: 429 GLRTGWRANGFVPPTRPAFQVS-----------PLP----VNPKHNRQNRGRMN--GNML 471
RT + N V P RPA Q + P P V P+ N M +
Sbjct: 417 --RTFYSPNP-VAPVRPAPQWASHQSRPPQYQPPTPLMRAVQPRRMSSNISTMKQASTQV 473
Query: 472 PQVGAHYMQQS---SQSAASSKDSSNQQKGGQSKYVPNGRIRELNK-GSGVSLGTFNSGG 527
P+V H + + +Q+A + + Y + +R + S L
Sbjct: 474 PRVAQHSQRVANIGTQTAGARAQVNPSMMRTMPHYKYSCGVRNVQPIVSSTHLQQVMEPA 533
Query: 528 VMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLL 586
V+ + + L +LA P++QKQ+LGER+YP++ + P L KITGMLLE+DNSELL +
Sbjct: 534 VLMQGQEPLTASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHM 593
Query: 587 LESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYL 622
LESPESL KVEEAV VL+ +AK + Q++ P+ +
Sbjct: 594 LESPESLHSKVEEAVAVLQAHQAKENAQKSAQPSLI 629
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASK 349
Y +++Y+ ++ DVT+ L FS G I S +V RD + + ++ F P +A +
Sbjct: 8 YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ +P+ + +QR
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQR 89
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/648 (43%), Positives = 382/648 (58%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V + +L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ A+ I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG VPN R +
Sbjct: 480 TAQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVA 537
Query: 523 FNSGGVMARKPD--------------------MLNGMLAAPSPEQQKQILGERLYPLVEK 562
R P + MLAA P++QKQ+LGERL+PL++
Sbjct: 538 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVMKGKPIRIMWSQR 89
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 269/619 (43%), Positives = 377/619 (60%), Gaps = 44/619 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLY GDL P VT+ LFD F ++ SVRVC+D RS Y Y+NF +P+DA RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T L + +RI S RDP R SG N+F+KNL SIDN L E F +FG I+SCKV
Sbjct: 108 ALNYTPLFERPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A G+SKG+GFVQFE EESA AAI+ LNG + DK+++VG FI++ +R +P +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL ++ E+ L + F KFG I+S ++ RD++G SR FGFVNF+ + A A+E
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG +G VLY RAQKK+ERE+ LR +FE++R R K +G+N+Y+KN+DD V DE+
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS+ G +TS+KVM + +G+++GFGFV +S+PEEA +A++ +G M+ +KPLY+A+A
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGLSRGFGFVAYSNPEEALRALSEMNGKMIGKKPLYIALA 407
Query: 370 QRKEDRQAHLQLQYAQ-----HMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP-GL 423
QRKEDR+AHLQ ++Q M+G + +Y S VP +P G
Sbjct: 408 QRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMSGPPQHMYVGQ--NGASLVPSQPIGY 465
Query: 424 MYQPL---GLRTGWRANGFV--------PPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLP 472
+QP G+R G FV P T P N +H+ Q + MN N P
Sbjct: 466 GFQPQFMPGMRPGSGPGNFVMPYPLQRQPQTGPRMGFRRGATNMQHHIQQQQLMNRN--P 523
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARK 532
G YM + + + G VP G + + + L S +
Sbjct: 524 TPGMRYM-----------NGAGNGRNGMDSSVPQGILPPI-----MPLPIDASSISHQKA 567
Query: 533 PDM----LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLE 588
P + L LA+ SP + ++LGE+LYPLVE+H+P VAK+TGMLLEMD +E+L L+E
Sbjct: 568 PLLPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLME 627
Query: 589 SPESLAVKVEEAVQVLKLS 607
SPE+L KV EA+ VL+LS
Sbjct: 628 SPEALKSKVSEALDVLRLS 646
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+ S++Y ++D VT+ L F + S +V RD+ + G+ ++ FS+P +A +A
Sbjct: 46 HPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRA 105
Query: 351 VNTFHGYMLHRKPLYVAIAQR 371
+ + L +P+ + ++ R
Sbjct: 106 MEALNYTPLFERPIRIMLSNR 126
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/648 (43%), Positives = 382/648 (58%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V + +L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRREFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ A+ I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG VPN R +
Sbjct: 480 TAQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVA 537
Query: 523 FNSGGVMARKPD--------------------MLNGMLAAPSPEQQKQILGERLYPLVEK 562
R P + MLAA P++QKQ+LGERL+PL++
Sbjct: 538 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVMKGKPIRIMWSQR 89
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 282/648 (43%), Positives = 380/648 (58%), Gaps = 61/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A + + DS Q GG VPN R +
Sbjct: 480 TTQRVGSECPDRLAMDFGGAGAAQQGLTDSC-QSGGGVPTAVPNLAPRAAVAAAAPRAVA 538
Query: 523 FNSGGVMARKPDMLNGMLAAPS--------------------PEQQKQILGERLYPLVEK 562
R P L AP P++QKQ+LGERL+PL++
Sbjct: 539 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 598
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 599 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 646
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 283/627 (45%), Positives = 379/627 (60%), Gaps = 62/627 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL +V + +L+D FS+ +AS+RVC+D T S Y YVNF + DA A+E
Sbjct: 35 ASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAME 94
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+ N T L+GK +RI +S RDP RKSG N+F+KNL SIDN L + F FG ++SCKV
Sbjct: 95 LLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKV 154
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A G+SKG+GFVQF+ EE+A AI+ LNG + DK++YVG FI++ +R + + K+T
Sbjct: 155 ALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFT 214
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL T+E L + F +G I S + +D NG SR FGFVNF NPD A A+E +
Sbjct: 215 NVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERL 274
Query: 252 NGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
NG+ I + +VLY RAQ+KAERE L+ + E++R R K +G+N+Y+KN+DD +DE+L
Sbjct: 275 NGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKL 334
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
K FS+ GTITS KVM D G +KG GFV FS+PEEASKA+N +G ++ RKPLYVA+AQ
Sbjct: 335 KDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQ 394
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQV----PPRPGLM-Y 425
RKE+R+AHLQ Q+AQ A G A +P+G P LY+ P + Q PG M
Sbjct: 395 RKEERKAHLQAQFAQIRA--PGGMA-PLPAGIP-LYHPGAPRLAPQQLYYGQGTPGFMPP 450
Query: 426 QPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKH-NRQNR------GRMNGNMLPQVGAHY 478
QP G + +P RP V+P + P H RQ + R NGN
Sbjct: 451 QPAGFSFQQQ---ILPGMRPG--VAPNFIMPYHLQRQGQLGQRTGVRRNGN--------- 496
Query: 479 MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSL-----------GTFNSGG 527
QQ Q+ ++S+ +Y+PNGR G SL F+ G
Sbjct: 497 FQQVQQNQMLHRNSNQ-----GFRYMPNGR-----NGMDPSLVPHGLMGPMMPMPFDGSG 546
Query: 528 VMARKPD---------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPD-LVAKITGMLLE 577
V A D L LA+ +PE Q+ +LGE LYPLVE+ P+ AK+TGMLLE
Sbjct: 547 VTAAPNDNQRPGALSTTLASALASATPENQRMMLGEHLYPLVERLAPNQYTAKVTGMLLE 606
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVL 604
MD SE++ L+ESPE L KV EA+QVL
Sbjct: 607 MDQSEVINLIESPEDLKTKVSEAMQVL 633
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
+ +++YV +++ +V +E+L FSQ I S +V RD+ K + G+ +V F++ ++AS
Sbjct: 32 FANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASN 91
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A+ + L+ KP+ + +QR
Sbjct: 92 AMELLNFTPLNGKPIRIMFSQR 113
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/644 (43%), Positives = 376/644 (58%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQREAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPTLRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + + Q GG V N R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKY 525
Query: 527 GVMARKPDMLNGMLAAPS--------------------PEQQKQILGERLYPLVEKHKPD 566
R P L AP P++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 282/648 (43%), Positives = 380/648 (58%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG V N R +
Sbjct: 480 TTQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVA 537
Query: 523 FNSGGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEK 562
R P L AP P ++QKQ+LGERL+PL++
Sbjct: 538 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 272/651 (41%), Positives = 372/651 (57%), Gaps = 57/651 (8%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T ASLYVGDL PDVT+ LF+ F + + S+RVC+D + RS Y YVNF P DA RA
Sbjct: 9 TMASLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAERA 68
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
++ N L + +RI WS RDP RKSGV N+F+KNL + IDN + + F FGNI+SC
Sbjct: 69 LDTMNFEPLKNRPMRIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDTFSAFGNILSC 128
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS--DRVLPSPA 187
+VAT E G S+G+GFV FETEE+AN AI +NG + +K+++VG+F+ +S +R++ A
Sbjct: 129 RVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVPRSERERMMGDKA 188
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
+TN+++KN ++ + L E F +GKI S + D+ G SRGFGFV+F+NPD+A +A
Sbjct: 189 RLFTNVYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQA 248
Query: 248 LEAMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
++ +N +G+ K +Y RAQKKAER L+ +FE+ + ER+ +Y+G N+YVKN+DD +
Sbjct: 249 VKELNDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVNLYVKNLDDVID 308
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGI-NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE L+ F+ GTITSAKVM D G +KGFGFVCFSSPEEA+KAV +G ++ +KPLY
Sbjct: 309 DERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLY 368
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY 425
VA+AQRKEDR+AHL Q+ Q G+ +P G ++TP + P M+
Sbjct: 369 VALAQRKEDRRAHLSSQFVQRFTGVR------VPFGQMPFNHSTPTSFIV-----PASMH 417
Query: 426 QPLGLRTGWRANGFVPPTRPA--------------------------FQVSPLPVNPKHN 459
+G AN V P R A FQ +P P N
Sbjct: 418 PRAFFASGNVANN-VRPQRWAGGQQIRVSGQYAMAGGAPMATAAAANFQRAPRPTMQGQN 476
Query: 460 RQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGR--------IRE 511
N M + + AA S S + G + PN R +R
Sbjct: 477 AGVAAARNATM---SSTRPITSTIHGAAGSGTQSRNRVGVAPQQAPNSRPTFKFTNSVRN 533
Query: 512 LNKGSGVSLGTFNSGG---VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLV 568
+ N+ V ++P + MLA P QKQ+LGERL+PL+ DL
Sbjct: 534 AQPSTPAGAAPMNASNAVLVQGQEP-LTTQMLAEACPRDQKQMLGERLFPLIYAMHADLA 592
Query: 569 AKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHP 619
KITGMLLE+DNSELL +LE ESL KVEEAV VL+ +AK +P
Sbjct: 593 GKITGMLLEIDNSELLHMLEHSESLRAKVEEAVAVLQAHQAKEEISRTQNP 643
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++D DVT+ L F Q G + S +V RD G+ +V F P +A +
Sbjct: 8 YTMASLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + L +P+ + +QR
Sbjct: 68 ALDTMNFEPLKNRPMRIMWSQR 89
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 276/631 (43%), Positives = 372/631 (58%), Gaps = 62/631 (9%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P TT SLYVGDL +VTD L+D F++ + SVRVC+D TT RS YGYVN+ SP D
Sbjct: 20 PYVTT--SLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQD 77
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA+++ N T L+G +RI +S RDP RKSG N+F+KNL + ID+ L + F FGN
Sbjct: 78 AARALDMLNFTPLNGSPIRIMYSHRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGN 137
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCKVAT G+SKG+GFVQF+ EESA AIE LNG + DK++YVG F++K +R
Sbjct: 138 ILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAI 197
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
++ N+++KNL TEE L + F ++G I S ++ RD +G ++ FGFVNF+N DDA
Sbjct: 198 DKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAA 257
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
A+EA+NG K + +AQKK ERE L+ +FE+ KE K++G+N+Y+KN+DD +
Sbjct: 258 TAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQSMKEAADKFQGANLYIKNLDDSI 317
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
D+ LK FS GTITS KVMRD GI++G GFV FS+PEEASKA+ +G M+ KPLY
Sbjct: 318 GDDRLKQLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASKALMEMNGKMVVSKPLY 377
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP--PGIVSQVPPRPGL 423
VA+AQRKEDR+A LQ Q++Q + PS P + P PG+ Q+
Sbjct: 378 VALAQRKEDRRARLQAQFSQI------RPVAMAPSVAPRMPMYPPGGPGLGQQI------ 425
Query: 424 MYQPLGLRTGWRANGF------VPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAH 477
Y GF VP RP +P+P +P V
Sbjct: 426 FYGQAPPAIIPPQPGFGYQQQLVPGMRPGG--APMP--------------NFFVPMVQQG 469
Query: 478 YMQQSSQSAASSKDSSNQQKGG--QSKYVPNGRIRELNKGSGVS--LGTFNSGGVMARKP 533
Q + +QQ Q + VP GR+ G G+ T +GG+++
Sbjct: 470 QQGQRPGGRRAGAAQQSQQPVPLMQQQMVPRGRVYRYPPGRGIPDVPMTGVAGGMLSVPY 529
Query: 534 DMLNGM------LAAP-------------SPEQQKQILGERLYPLVEKHKPDLVAKITGM 574
DM +GM L+ P SPEQQ+ +LGE LYPLVE+ +PD AK+TGM
Sbjct: 530 DM-SGMPMRDAALSQPIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGM 588
Query: 575 LLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
LLEMD +E+L LLESPE+L KV EA++VL+
Sbjct: 589 LLEMDQTEVLHLLESPEALKAKVAEAMEVLR 619
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 274/641 (42%), Positives = 370/641 (57%), Gaps = 51/641 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL + IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
A E G+SKG+GFV FETEESAN +IE +NG + +K+++VGRFI + +R L A
Sbjct: 131 AQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGRFISRKEREKELGEKAKL 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+TEE L E F K+G I S + ++G SRGFGFV F+NPD A RA++
Sbjct: 191 FTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMM-KDGKSRGFGFVAFENPDAAERAVQ 249
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+N + KVLY RAQKK ER+ L+ +FE+ + ER+ +Y G N+YVKN+DD + DE
Sbjct: 250 ELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDE 309
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM DE G +KGFGFVCFS+P+EA+KAV +G ++ KPLYVA+
Sbjct: 310 RLRKEFAPYGTITSAKVMLDE-GRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVAL 368
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQP- 427
AQRKE+R++HL QY Q + + + S + T ++Q P Y P
Sbjct: 369 AQRKEERKSHLASQYIQRVNSLRMQHIGQVYQQSGSYFMPT----IAQ----PQRFYGPQ 420
Query: 428 -LGLRTG--WRANGFVPPTRPAFQVSP-LPVNPKHNRQNRGRMNGNMLPQVG-------- 475
+RT W AN + P V+ P N Q G
Sbjct: 421 VAQVRTAPRWSANAQMRPNAANQSVAANAPAGAYQAMSAAAHAANNQYRQAGNVRGGANQ 480
Query: 476 -----------AHYMQQSSQSAASSKDSSNQQ-------------KGGQSKYVPNGRIRE 511
+ M+ S++ + +N Q + KY N R +
Sbjct: 481 QAQNAQSAQATSAAMRNSARPITGQQPGANMQTRPVAPQMTAAQPRPQSYKYTANMRNPQ 540
Query: 512 LNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
+ + + L N V+ + + L MLAA P +QK +LGERL+PL+E P L K
Sbjct: 541 VPQQVPIPLQQVNQQAVIVKGQEPLTASMLAAAQPAEQKNMLGERLFPLIEAMHPQLTGK 600
Query: 571 ITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKV 611
ITGMLLE+DNSELL +LE ESL KVEEAV VL+ +AK
Sbjct: 601 ITGMLLEIDNSELLHMLEHHESLKAKVEEAVAVLQAHQAKT 641
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 17/195 (8%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P + +L++ +L +D+TE L EKFS G + S+ + RD S G+ +VNF P DA
Sbjct: 6 PNYQMASLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN I + + +Q R + K NV++KN+D
Sbjct: 66 ERALDTMNFDTIKGRPIRIMWSQ----------------RDPSLRKSGVGNVFIKNLDKK 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ + FS G I S KV +DEKG +KG+GFV F + E A+ ++ +G +L+ K +
Sbjct: 110 IDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKV 169
Query: 365 YVAIAQRKEDRQAHL 379
+V +++R+ L
Sbjct: 170 FVGRFISRKEREKEL 184
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/644 (43%), Positives = 378/644 (58%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQIRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPALRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + + Q GG V N R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKY 525
Query: 527 GVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEKHKPD 566
R P L AP P ++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 279/638 (43%), Positives = 376/638 (58%), Gaps = 58/638 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L + FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG IG KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLP 472
++Q+ P P + G R GF Q P P +H G+ P
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQAGPRPTL-RHLAP-----TGSECP 473
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARK 532
A M AA + + Q GG V N R + R
Sbjct: 474 DRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRS 531
Query: 533 PDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEKHKPDLVAKIT 572
P L AP P ++QKQ+LGERL+PL++ +L KIT
Sbjct: 532 PHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKIT 591
Query: 573 GMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
GMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 592 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 282/648 (43%), Positives = 380/648 (58%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG V N R +
Sbjct: 480 TTQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVA 537
Query: 523 FNSGGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEK 562
R P L AP P ++QKQ+LGERL+PL++
Sbjct: 538 PYKYASSVRGPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/644 (43%), Positives = 378/644 (58%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPALRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + + Q GG V N R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVATAAPRAVAPYKY 525
Query: 527 GVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEKHKPD 566
R P L AP P ++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/644 (43%), Positives = 377/644 (58%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPTLRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + + Q GG V N R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKY 525
Query: 527 GVMARKPDMLNGMLAAPS--------------------PEQQKQILGERLYPLVEKHKPD 566
R P L AP P++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 264/602 (43%), Positives = 352/602 (58%), Gaps = 67/602 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH +VT+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 12 ASLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP R+SGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 72 SMNFDVLRGRPIRIMWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDTFSAFGNILSCKV 131
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV FETEESA AI +NG + K+++VGRFI + DR L A
Sbjct: 132 AQDEAGNSKGYGFVHFETEESAVNAITKVNGMLLNGKKVFVGRFIPRKDRERELGEKAKY 191
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN + +E L E FSK+GK+ S + ++G SRGFGFV +++PD A RA +
Sbjct: 192 FTNVYIKNFGDEFDDEKLFECFSKYGKVTSHKVMSSDDGKSRGFGFVCYEDPDAAERACD 251
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
M+ + K L+ RAQK+ ER+ LR +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 252 DMHAKDMNGKTLFVGRAQKRNERQTELRRKFEQMKIERLNRYQGVNLYVKNLDDTIDDER 311
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKG-FGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM E G NKG FGFVCFSSPEEA+KAV +G +L KPLYVA+
Sbjct: 312 LRKEFAPYGTITSAKVM-TEGGRNKGGFGFVCFSSPEEATKAVTEMNGRILVSKPLYVAL 370
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
AQRKEDR+A L QY Q MAG+ ++ PG P +P Y P
Sbjct: 371 AQRKEDRKAQLASQYMQRMAGMRMQQMG-------QMFQPGGPGYFMPAPIQPQRFYTPA 423
Query: 429 GLRT-----GWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
+ W A P RP F+ +P NP ++G + N + A MQQ+
Sbjct: 424 QMAQFRATPRWSAQ---PQPRPGFKFTPAMRNPP----SQGSLPSNAMGGSAAGGMQQAL 476
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAP 543
V+ + + MLA+
Sbjct: 477 --------------------------------------------VVQGQEPLTASMLASA 492
Query: 544 SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
+P QKQ+LGERL+PL+++ PD+ KITGMLLE+DNSELL +LE ESL KV+EAV V
Sbjct: 493 APNDQKQMLGERLFPLIQRMYPDMAGKITGMLLEIDNSELLHMLEHNESLKAKVDEAVAV 552
Query: 604 LK 605
L+
Sbjct: 553 LQ 554
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ ++VT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 9 YPIASLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDM--ITRRSLGYAYVNFQQPADA 66
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A+++ + +L +P+ + +QR
Sbjct: 67 ERALDSMNFDVLRGRPIRIMWSQR 90
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 262/608 (43%), Positives = 374/608 (61%), Gaps = 47/608 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDL +V +G+LFD FS+ + S+RVC+D S Y YVNF +P DA A+E
Sbjct: 23 SSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAME 82
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+ N T L+GK +RI S RDP RKSG AN+F+KNL SIDN LQE F +FG ++SCKV
Sbjct: 83 LLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGPVLSCKV 142
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A +G+SKG+GFVQFE EE+A +AI LNG + DK ++VGRF++ +R+ + + K+T
Sbjct: 143 AVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQERIEATGSPKFT 202
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL ++E L + FS +G I S ++ +D++G S+GFGFVNF +PD A A+E +
Sbjct: 203 NVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKL 262
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG+ KV Y RAQ+K ERE L+ +FE++R R K K +N+Y+KN+DD + DE+LK
Sbjct: 263 NGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLK 322
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS+ G+ITS KVM D++G++KG GFV FS+PEEAS+A+N +G M+ +KPLYVA+AQR
Sbjct: 323 ELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQR 382
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLR 431
+E+R+A LQ + Q I+ + +PSG P + PG PR P L
Sbjct: 383 REERKARLQAHFTQ----IQAPGLSPMPSGLPGYH----PGA-----PR----LAPQQLF 425
Query: 432 TGWRANGFVPPTRPA---FQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHY-MQQSSQSAA 487
G G +PP +PA FQ LP M VG ++ M Q
Sbjct: 426 FGQGTAGMMPP-QPAGYGFQQQLLP---------------GMRAGVGPNFVMPYQMQRQG 469
Query: 488 SSKDSSNQQKGGQSKYVPNG-----RIRELNK-----GSGVSLGTFNSGGVMARKPDMLN 537
++GG + + R+ + SG+ + ++ L
Sbjct: 470 QQGQRMGIRRGGNHQQIQQQQQVHYRLNVFQRFPPLTASGMPVTPSDAQRTAPVPISALT 529
Query: 538 GMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
LA+ +PE++ +LGE+LYPLVE+ +PD VAK+TGMLLEMD +E+L L+ESP++L KV
Sbjct: 530 TALASATPEKRMVMLGEQLYPLVERLEPDHVAKVTGMLLEMDQTEVLHLIESPDALKKKV 589
Query: 598 EEAVQVLK 605
EA+QVL+
Sbjct: 590 AEAMQVLQ 597
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEAS 348
++ S++YV +++ +V + +L FSQ + S +V RD+ + + G+ +V FS+P++A+
Sbjct: 19 QFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAA 78
Query: 349 KAVNTFHGYMLHRKPLYVAIAQR 371
A+ + L+ K + + ++ R
Sbjct: 79 NAMELLNFTPLNGKAIRIMVSHR 101
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 278/623 (44%), Positives = 383/623 (61%), Gaps = 37/623 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL +V + +L+D FS+ +AS+RVC+D T S Y YVNF + DA A+E
Sbjct: 35 ASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAME 94
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+ N T L+GK +RI +S RDP RKSG N+F+KNL SIDN L + F FG ++SCKV
Sbjct: 95 LLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKV 154
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A G+SKG+GFVQF+ EE+A AI+ LNG + DK++YVG FI++ +R + + K+T
Sbjct: 155 ALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSPKFT 214
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL T+E L + F +G I S + +D NG SR FGFVNF NPD A A+E +
Sbjct: 215 NVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERL 274
Query: 252 NGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
NG+ I + +VLY RAQ+KAERE L+ + E++R R K +G+N+Y+KN+DD +DE+L
Sbjct: 275 NGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKL 334
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
K FS+ GTITS KVM D G +KG GFV FS+PEEASKA+N +G ++ RKPLYVA+AQ
Sbjct: 335 KDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQ 394
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQV----PPRPGLM-Y 425
RKE+R+AHLQ Q+AQ A G A +P+G P LY+ P + Q PG M
Sbjct: 395 RKEERKAHLQAQFAQIRA--PGGMA-PLPAGIP-LYHPGAPRLAPQQLYYGQGTPGFMPP 450
Query: 426 QPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKH-NRQNR------GRMNGNMLPQVGAHY 478
QP G + +P RP V+P + P H RQ + R NGN
Sbjct: 451 QPAGFSFQQQ---ILPGMRPG--VAPNFIMPYHLQRQGQLGQRTGVRRNGNFQQVQQNQQ 505
Query: 479 MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELN----KGSGVSLGTFNSGGVMARKPD 534
M + S + N + G VP+G + + GSGV+ ++ ++P
Sbjct: 506 MLHRN-SNQGFRYMPNGRNGMDPSLVPHGLMGPMMPMPFDGSGVTAAPNDN-----QRPG 559
Query: 535 MLN----GMLAAPSPEQQKQILGERLYPLVEKHKPD-LVAKITGMLLEMDNSELLLLLES 589
L+ LA+ +PE Q+ +LGE LYPLVE+ P+ AK+TGMLLEMD SE++ L+ES
Sbjct: 560 ALSTTLASALASATPENQRMMLGEHLYPLVERLAPNQYTAKVTGMLLEMDQSEVINLIES 619
Query: 590 PESLAVKVEEAVQVLKLSEAKVS 612
PE L KV EA+QVL+ + ++
Sbjct: 620 PEDLKTKVSEAMQVLQSRKTSIT 642
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
+ +++YV +++ +V +E+L FSQ I S +V RD+ K + G+ +V F++ ++AS
Sbjct: 32 FANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASN 91
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A+ + L+ KP+ + +QR
Sbjct: 92 AMELLNFTPLNGKPIRIMFSQR 113
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 282/648 (43%), Positives = 381/648 (58%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQIRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG V N R +
Sbjct: 480 TAQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVA 537
Query: 523 FNSGGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEK 562
R P L AP P ++QKQ+LGERL+PL++
Sbjct: 538 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 274/639 (42%), Positives = 378/639 (59%), Gaps = 63/639 (9%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
P SLYVGDL +VTD +L+D F++ + SVRVC+D +T RS YGYVN+ +P DA RA
Sbjct: 10 VPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARA 69
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
++V N T L+ K +RI +S RDP RKSG+AN+F+KNL + ID+ L + F +FGNI+SC
Sbjct: 70 LDVLNFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGNILSC 129
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
KVAT G+SKG+GFVQF++EE+A AI+ LNG V DK++YVG F++K DR + K
Sbjct: 130 KVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDRDGALYSIK 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+ N+F+KNL T+E L F++ G I S ++ RD +G S+ FGFVNF++ DDA +A+E
Sbjct: 190 FNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAAKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
A+NG I + Y +AQKK+ERE L+ +FE+ KE + K++G N+Y+KN+DD + DE+
Sbjct: 250 ALNGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSINDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS G ITS KVMRD GI++G GFV FS+PEEAS+A+ +G ML KPLYVA+A
Sbjct: 310 LKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMLISKPLYVALA 369
Query: 370 QRKEDRQAHLQLQYAQH----MAGIEGSSANVIPSGYPS-----LYYTTPPGIVSQVPPR 420
QRKE+R+A LQ Q++Q MA S + P G P LY PP + +PP+
Sbjct: 370 QRKEERRARLQAQFSQMRPVTMAPSVASRMPMYPPGAPGMGQQFLYGQGPPAM---MPPQ 426
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQ 480
G YQ VP RP +P+P +P V
Sbjct: 427 AGFGYQ----------QQLVPGMRPG--GAPMP--------------NFFVPLVQQGQQG 460
Query: 481 QSSQSAASSKDSSNQQKG---GQSKYVPNGRIRELNKGSGV-SLGTFNSGGVMARKPDML 536
Q Q+ Q + +P GR+ G + + G M P +
Sbjct: 461 QRPGGRRGGGPVQQTQQPVPLMQQQMLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDM 520
Query: 537 NGM----LAAPSP-------------EQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
GM A P P EQQ+ +LGE LYP+V++ + D AK+TGMLLEMD
Sbjct: 521 GGMPIRDAAQPMPITALATALANATPEQQRTMLGESLYPIVDQLEHDSAAKVTGMLLEMD 580
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
+E+L LLESPE+L KV EA++VL+ V+ Q+ I+
Sbjct: 581 QTEVLHLLESPEALKAKVAEAMEVLR----TVAAQQQIN 615
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEA 347
+++ +++YV ++D +VTD +L F+Q G + S +V RD + G+G+V +S+P++A
Sbjct: 7 IQFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDA 66
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
++A++ + L+ KP+ + + R
Sbjct: 67 ARALDVLNFTPLNNKPIRIMYSHR 90
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 470 bits (1210), Expect = e-129, Method: Compositional matrix adjust.
Identities = 279/644 (43%), Positives = 377/644 (58%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPTLRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + + Q GG V N R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKY 525
Query: 527 GVMARKPDMLNGMLAAPS--------------------PEQQKQILGERLYPLVEKHKPD 566
R P L AP P++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 275/639 (43%), Positives = 377/639 (58%), Gaps = 73/639 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + R +G
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI----------RQSG--- 457
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
P+ ++ + + AS + Q+ G V N R + R
Sbjct: 458 PRPALRHLAPTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVR 517
Query: 532 KPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEKHKPDLVAKI 571
P L AP P ++QKQ+LGERL+PL++ +L KI
Sbjct: 518 SPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKI 577
Query: 572 TGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
TGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 578 TGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 616
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 266/630 (42%), Positives = 383/630 (60%), Gaps = 48/630 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDLH V D +LFD FS+ + SVRVC+D + +S Y YVN+ + DA RA+E+
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++GK +RI +S RDP +RKSG N+F+KNL +SIDN L + F FGNI+SCK+A
Sbjct: 96 LNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIA 155
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+S+G+GFVQFE +ESA +AI+ LNG + DK+++VG F++K DR S K++N
Sbjct: 156 TDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSN 215
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL VT++ L E F K+G I S ++ RD +G SR FGFVNF+N D A +A++ +N
Sbjct: 216 VYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELN 275
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + K LY RAQKK+ERE L+ +FE+ +E K++ +N+Y+KN+++++ DE+L+
Sbjct: 276 GKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRE 335
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F++ G ITS KVMRD G+++G GFV F S E+A++A+ +G M+ KPLYVA+AQRK
Sbjct: 336 LFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRK 395
Query: 373 EDRQAHLQLQYAQH----MAGIEGSSANVIPSGYPS----LYYTTPPGIVSQVPPRPGLM 424
EDR+A LQ Q++Q MA G + P G P L+Y PP + P+ G
Sbjct: 396 EDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAF--INPQAGFA 453
Query: 425 Y-QPL--GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQ 481
+ QPL G+R G F+ P Q P P GR G M + QQ
Sbjct: 454 FQQPLMPGMRPGGPMPNFM---MPMVQQGQQPQRPA------GRRAGGMQQPMPMGGQQQ 504
Query: 482 SSQSAASSKDSSNQQKGGQSKYVPNGRIRE---LNKGSGVSLGTFNSGGVMARKP----- 533
+GG+ P GR ++ V ++ GG+ R+
Sbjct: 505 VF------------PRGGRGYRYPTGRGMPDPGMHSVGAVMPPSYEMGGMPMREAAPQPV 552
Query: 534 --DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
L LA P+QQ+ +LGE LYPLVE+ + + AK+TGMLLEMD +E+L LLESP+
Sbjct: 553 PIGALATALANAPPDQQRLMLGENLYPLVEQLEREQAAKVTGMLLEMDQTEVLHLLESPD 612
Query: 592 SLAVKVEEAVQVLK----LSEAKVSTQEAI 617
+L KV EA++VL+ L ++ VST++ +
Sbjct: 613 ALKAKVAEAMEVLRSAQHLQQSNVSTEQQL 642
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 282/648 (43%), Positives = 379/648 (58%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQREAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG V N R +
Sbjct: 480 TTQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVA 537
Query: 523 FNSGGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEK 562
R P L AP P ++QKQ+LGERL+PL++
Sbjct: 538 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 282/648 (43%), Positives = 381/648 (58%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG V N R +
Sbjct: 480 TAQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVATAAPRAVA 537
Query: 523 FNSGGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEK 562
R P L AP P ++QKQ+LGERL+PL++
Sbjct: 538 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 277/613 (45%), Positives = 373/613 (60%), Gaps = 37/613 (6%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL V D +LFD FS+ S+ SVRVC+D T S Y YVNF SP DA RA+E+
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEM 99
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++GK +RI +S RDP +RKSG AN+F+KNL +SIDN L + F FGNI+SCKVA
Sbjct: 100 LNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVA 159
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQFE EE+A AI LNG + DK++YVG F++K +R S K+ N
Sbjct: 160 TEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNN 219
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL TE++L E F KFG I S+++ R+ +G SR FGFVNF+NPDDA RA+E +N
Sbjct: 220 VYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLN 279
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE-LK 311
G K Y RAQKK+ERE L+ +FE+ KE K +G+N+Y+KN+DD + D+E LK
Sbjct: 280 GKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLK 339
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F+ GTITS KVMRD G++KG GFV F S E+AS+A+ +G M+ KPLYVA+AQR
Sbjct: 340 EIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQR 399
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSAN----VIPSGYPS----LYYTTPPGIVSQVPPRPGL 423
KE+R+A LQ Q++Q + S + P G P L+Y PP V P+PG
Sbjct: 400 KEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAF--VNPQPGF 457
Query: 424 MYQPLGLRTGWRAN-GFVPP-TRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQ 481
+Q L G R + G +P P Q P P R G + M P + +
Sbjct: 458 GFQ-QHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQPM-PMGHQQMLPR 515
Query: 482 SSQSA---ASSKDSSNQQKGGQSKYVPN----GRIRELNKGS--GVSLGTFNSGGVMARK 532
S+ AS + + G VP+ GR+ + G+ V +G S
Sbjct: 516 GSRGGYRYASGRGMPDNAFRGVGGLVPSPYEMGRMPLSDAGAPPQVPIGALASA------ 569
Query: 533 PDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPES 592
LA P+QQ+ +LGE LYPLV++ + D AK+TGMLLEMD +E+L L+ESP++
Sbjct: 570 -------LANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDA 622
Query: 593 LAVKVEEAVQVLK 605
L KV EA++VL+
Sbjct: 623 LKAKVAEAMEVLR 635
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 23/190 (12%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG-TSRGFGFVNFDNPDDARRALE 249
T+L++ +LD V + L + FS+ G + S+ + RD N S G+ +VNF +P DA RALE
Sbjct: 39 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALE 98
Query: 250 AMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + I K ++Y+ R K +N+++KN+D +
Sbjct: 99 MLNFTPINGKPIRIMYS-------------------NRDPSSRKSGAANIFIKNLDKSID 139
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
++ L FS G I S KV + G +KG+GFV F E A A++ +G +L+ K +YV
Sbjct: 140 NKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYV 199
Query: 367 AIAQRKEDRQ 376
RK++R+
Sbjct: 200 GPFVRKQERE 209
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASK 349
++ +++YV ++D V D +L FSQ G++ S +V RD ++ G+ +V FSSP +A++
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A+ + ++ KP+ + + R
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNR 117
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 269/636 (42%), Positives = 384/636 (60%), Gaps = 42/636 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY+GDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA--AK 189
E G S+G+GFV FET E+AN AI+ +NG + D++++VG F + +R L A +
Sbjct: 131 VCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E FS FG S+ + D++G SRGFGFVN+ N ++A++A+
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +++Y RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + D+
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q +A + ++ S P+ Y+ +S +P P
Sbjct: 369 QRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYF------LSAMPQPPN------ 416
Query: 429 GLRTGWRANGFVPPTRPAFQVS-----------PLP----VNPKHNRQNRGRMN--GNML 471
RT + N V P RPA Q + P P V P+ N M +
Sbjct: 417 --RTFYSPNP-VAPVRPAPQWASHQSRPPQYQPPTPLMRAVQPRRMSSNISTMKQASTQV 473
Query: 472 PQVGAHYMQQS---SQSAASSKDSSNQQKGGQSKYVPNGRIRELNK-GSGVSLGTFNSGG 527
P+V H + + +Q+A + + Y + +R + S L
Sbjct: 474 PRVAQHSQRVANIGTQTAGARAQVNPSMMRTMPHYKYSCGVRNVQPIVSSTHLQQVMEPA 533
Query: 528 VMARKPDMLNGMLAAPSP-EQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLL 586
V+ + + L L A +P ++QKQ+LGER+YP++ + P L KITGMLLE+DNSELL +
Sbjct: 534 VLMQGQEPLTASLLAGAPLQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHM 593
Query: 587 LESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYL 622
LESPESL KVEEAV VL+ +AK + Q++ P+ +
Sbjct: 594 LESPESLHSKVEEAVAVLQAHQAKENAQKSAQPSLI 629
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASK 349
Y +++Y+ ++ DVT+ L FS G I S +V RD + + ++ F P +A +
Sbjct: 8 YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ +P+ + +QR
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQR 89
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 279/644 (43%), Positives = 377/644 (58%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPALRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + + Q GG V N R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKY 525
Query: 527 GVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEKHKPD 566
R P L AP P ++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 282/648 (43%), Positives = 380/648 (58%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG V N R +
Sbjct: 480 TAQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVA 537
Query: 523 FNSGGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEK 562
R P L AP P ++QKQ+LGERL+PL++
Sbjct: 538 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 277/648 (42%), Positives = 385/648 (59%), Gaps = 56/648 (8%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T S+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK LRI WS RDP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GN++SCKV E+G SKG+GFV FET E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNVLSCKVVCDENG-SKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + D++G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDAIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PS 404
KPLYVA+AQRKE+RQA+L +Y Q A + VI PSGY +
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRKASVPAVPNPVINPYQPAPPSGYFMAAVPQTQNHA 420
Query: 405 LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ-- 461
YY PP +Q+ P P W A G RP FQ P + P R
Sbjct: 421 AYY--PPSQTAQLRPSP-----------CWTAQG----ARPHPFQNKPGAIRPAAPRVPF 463
Query: 462 NRGRMNGNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RE 511
N R + +P+V + +S+++ ++ VP + +
Sbjct: 464 NTMRPASSQVPRVMSPQRVANKSTKTVGPRPAAAAAAATPAVHTVPRYKYAAGVRNPQQH 523
Query: 512 LNKGSGVSLGTFNSGGVMARKPDMLN-GMLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
LN V + V + + L MLA+ P++QKQ+LGERL+PL++ P L K
Sbjct: 524 LNAQPQVKM---QQPAVHVQGQETLTAAMLASAPPKEQKQMLGERLFPLIQAMHPTLAGK 580
Query: 571 ITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
ITGMLLE DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 581 ITGMLLETDNSELLHMLESPESLCSKVDEAVVVLQAHQAKEAAQKAVN 628
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 279/645 (43%), Positives = 377/645 (58%), Gaps = 71/645 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPTLRHL 465
Query: 472 PQVGAHYMQQ------SSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNS 525
G+ + + +A S Q GG V N R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGGVPTAVQNLAPRAAVAAAAPRAVAPYK 525
Query: 526 GGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEKHKP 565
R P L AP P ++QKQ+LGERL+PL++
Sbjct: 526 YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS 585
Query: 566 DLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 630
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 278/630 (44%), Positives = 375/630 (59%), Gaps = 30/630 (4%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TA ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF DA
Sbjct: 311 TAIPMASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADA 370
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
R +E N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI
Sbjct: 371 ERVLETMNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSAFGNI 430
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP-- 184
+SCKV + E+G SKG+GFV FE +++A+ AIE +NG + + ++YVGRF + +R L
Sbjct: 431 LSCKVISDENG-SKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKERELELG 489
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+ A ++TN+++KN D+ + L E F KFG S+ + DE+G S+GFGFV+++ +DA
Sbjct: 490 ARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKHEDA 549
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+RA++ MNG K +Y RAQKK ER+ L+ FE+ ++ER +Y+G N+YVKN+DD
Sbjct: 550 QRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQGVNLYVKNLDDS 609
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ DE L+ FS GTITSAKVM E G ++GFGFVCFS+PEEA+KAV+ +G ++ KPL
Sbjct: 610 IDDERLRKAFSPFGTITSAKVMM-EGGHSRGFGFVCFSAPEEAAKAVSEMNGKLVATKPL 668
Query: 365 YVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYP---SLYYTTPPGIVSQVPPRP 421
YVA+AQRK DRQ HL QY Q MA + S V P S Y+ TP + Q RP
Sbjct: 669 YVALAQRKRDRQVHLTNQYMQRMASFQAMSNPVFSPYQPPPTSRYFMTP---LPQPQSRP 725
Query: 422 GLMYQPLGLRTGWR---ANGFVPPTR-PAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA- 476
Y P G +R + VP R FQ P + P+ N +
Sbjct: 726 A--YYPYGQIPQFRPSPPHWAVPGGRFHPFQTVPGVMRPRGPAPAPAPAPFNPVTSSSVP 783
Query: 477 --------HYMQQSSQ--SAASSKDSSNQQKGGQSKYVPNGR-IRELNKGSGVSLGTFNS 525
H + SSQ + + Q KY R + LN V+ T
Sbjct: 784 VSALMNTQHIVNPSSQMLGPPNPPFMPPMRSVQQYKYAAGVRNPKHLNMPLPVT--TPQP 841
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
G+ + + MLAA P++QKQILGERL+PL++ P L KITGMLLE+DNSELL
Sbjct: 842 AGLFEFQEPLTASMLAATPPQEQKQILGERLFPLIQALNPALAGKITGMLLEIDNSELLH 901
Query: 586 LLESPESLAVKVEEAVQVLKLSEAKVSTQE 615
+LESPESL KV+EAV VL+ +AK + ++
Sbjct: 902 MLESPESLQAKVDEAVAVLEAHQAKEAAEK 931
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 266/618 (43%), Positives = 375/618 (60%), Gaps = 39/618 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD+T+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L E F K+GK S+ + D +G SRGFGFV+F+ +DA +A+E
Sbjct: 190 FTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG+ + K ++ RAQKK ER+ L+ +FE ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI------PSGY--PSL--------YYTTPPGI 413
QRKE+R+AHL QY Q +AG+ N I SGY P++ YY P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRAMPPNAIINQFQPTSGYFMPAVPQAQNRTTYYA--PNQ 426
Query: 414 VSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL-PVNPKHNRQNRGRMNGNMLP 472
++Q+ P P W+ G S L P+ N ++ G+ P
Sbjct: 427 LAQMRPNP-----------RWQQQGGRGQGGFQGMPSSLRQPGPRGNMRHMSPSGGSQGP 475
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARK 532
+ M + + K S PN ++ + ++L + +
Sbjct: 476 RASGQSMAPRPSMGVPGPRTMSPYKYATSVRNPNPQVVQ-----PIALQQAQPAVHIQGQ 530
Query: 533 PDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPES 592
+ MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LES ES
Sbjct: 531 EPLTASMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHES 590
Query: 593 LAVKVEEAVQVLKLSEAK 610
L KVEEAV VL+ +AK
Sbjct: 591 LQSKVEEAVAVLQAHQAK 608
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ D+T+ L FS G + S +V RD I + G+ +V FS P +A
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFSQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVVKGKPIRIMWSQR 89
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 272/619 (43%), Positives = 379/619 (61%), Gaps = 49/619 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V + +L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRREFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ A+ I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + R + +
Sbjct: 427 QLAQMRPNPR-----------WQQGG-----RPQGFQGMPSALRQSGPRPALRHLAPTGV 470
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
P + + AA++ + K S P+ I+ L V +
Sbjct: 471 P-TAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAV-------HVQGQ 522
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
+P + MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPE
Sbjct: 523 EP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 581
Query: 592 SLAVKVEEAVQVLKLSEAK 610
SL KV+EAV VL+ AK
Sbjct: 582 SLRSKVDEAVAVLQAHHAK 600
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVMKGKPIRIMWSQR 89
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 266/621 (42%), Positives = 373/621 (60%), Gaps = 42/621 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L+ FS + S+RVC+D T RS Y Y+NF P DA A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + G+ +RI WS RDP RKSGV N+F+KN+ ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E G SKG+GFV FETEE+AN AIE +NG + D++++VG F + +R L S A K
Sbjct: 131 VCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGSKALK 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D +E L E F+ FG+ S+ + +DE G SRGFGFVNF + +DA++A++
Sbjct: 190 FTNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + KV+Y RAQK+ ER+ L+ +FE +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDSIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F+ GTITSAKVM D ++GFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFAPYGTITSAKVMTDGPQ-SRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTT--------PPGIVSQVPPRP 421
QR+E+R+A L +Y Q +A + ++ +I S + YY T P VS + P
Sbjct: 369 QRREERKAILTNKYMQRLATLRTMTSPIIDSYQQAGYYMTVPQPRSFYSPNAVSTMRALP 428
Query: 422 GLMYQPLGLRTGW-------RANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQV 474
QP L+ + R + + R A +P ++ N G
Sbjct: 429 RWTGQPHRLQGPYTIVSGPRRGSTPIASVRQASTQAPNVISSAQKTNNIG---------- 478
Query: 475 GAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD 534
+Q+ + + GQ KY + +R + G L S + ++P
Sbjct: 479 --------TQTVGGRAELPGVPRSGQYKY--SSAVRNAQQVPGPVLEP--SVYIQGQEP- 525
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
+ MLAA QKQ+LGERLYPL+ P+L KITGMLLE+DNSELL +LE+PESL
Sbjct: 526 LTASMLAAAPLMDQKQLLGERLYPLISTLHPNLAGKITGMLLEIDNSELLHMLETPESLH 585
Query: 595 VKVEEAVQVLKLSEAKVSTQE 615
KV+EA+ VL+ K +++
Sbjct: 586 SKVDEAIAVLQAHRVKECSKD 606
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
PA +L++ +L DVTE L +KFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
AL+ MN VI + + +Q R+ LR K N+++KN+D+
Sbjct: 66 ECALDTMNYDVIKGRPIRIMWSQ----RDPGLR------------KSGVGNIFIKNMDES 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE+G +KG+GFV F + E A++A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+ L
Sbjct: 169 FVGHFKSRKEREEEL 183
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 281/648 (43%), Positives = 380/648 (58%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG V N R +
Sbjct: 480 TTQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVA 537
Query: 523 FNSGGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEK 562
R P L AP P ++QKQ+LGERL+PL++
Sbjct: 538 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 272/619 (43%), Positives = 379/619 (61%), Gaps = 49/619 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 28 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 87
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 88 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 147
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 148 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 206
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V + +L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 207 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 266
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 267 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 326
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 327 LRREFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 385
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ A+ I GY P++ YYT P
Sbjct: 386 QRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 443
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + R + +
Sbjct: 444 QLAQMRPNPR-----------WQQGG-----RPQGFQGMPSALRQSGPRPALRHLAPTGV 487
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
P + + AA++ + K S P+ I+ L V +
Sbjct: 488 P-TAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAV-------HVQGQ 539
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
+P + MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPE
Sbjct: 540 EP-LTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 598
Query: 592 SLAVKVEEAVQVLKLSEAK 610
SL KV+EAV VL+ AK
Sbjct: 599 SLRSKVDEAVAVLQAHHAK 617
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 25 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 82
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 83 ERALDTMNFDVMKGKPIRIMWSQR 106
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 271/612 (44%), Positives = 371/612 (60%), Gaps = 36/612 (5%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +V D +L+D F++ + SVRVC+D TT RS YGYVNF +P DA RA++V
Sbjct: 36 SLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDV 95
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T L+ + +RI +S RDP RKSG AN+F+KNL ++ID+ L + F +FG I+SCK+A
Sbjct: 96 LNFTPLNNRSIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIA 155
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G SKG+GFVQF+ EE+A AI+ LNG + DK++YVG F++K DR K+ N
Sbjct: 156 TDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNN 215
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL T+E L+ F ++G I S LI RD +G SR FGFVNF+NPDDA +A+E +N
Sbjct: 216 VYVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLN 275
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y +AQKK+EREQ L+ +FE+ KE KY G N+Y+KN+DD ++DE+LK
Sbjct: 276 GKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKE 335
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F+ GTITS KVMRD GI++G GFV FS+PEEA++A+ +G M KPLYVA+AQRK
Sbjct: 336 MFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMNGKMFAGKPLYVALAQRK 395
Query: 373 EDRQAHLQLQYAQ-HMAGIEGSSA---NVIPSGYPS-----LYYTTPPGIVSQVPPRPGL 423
E+R+A LQ Q++Q I S A + P G P LY PP + +PP+ G
Sbjct: 396 EERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAM---MPPQAGF 452
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
YQ L G R G P+F V P+ + ++ GR + Q
Sbjct: 453 GYQ-QQLVPGMRPGGG---PMPSFFV-PMVQQGQQGQRPVGRRGTGPV---------QQP 498
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIRE--LNKGSGVSLGT-FNSGGVMARKP------- 533
Q +G +Y P +++ L +G L ++ GG+ R
Sbjct: 499 QQPMPMMQQQMLPRGRVYRYPPGRNMQDVPLQVAAGGMLSVPYDMGGLPMRDAVGQPMPI 558
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
L LA PEQQ+ +LGE LYPLV++ + D AK+TGMLLEMD E+L L+ESP++L
Sbjct: 559 QALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDAL 618
Query: 594 AVKVEEAVQVLK 605
KV EA+ VL+
Sbjct: 619 KAKVAEAMDVLR 630
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 107/193 (55%), Gaps = 23/193 (11%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +V + L + F++ G++ S+ + RD S G+G+VNF NP DA RAL+
Sbjct: 35 TSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALD 94
Query: 250 AMNGSVIGS---KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + + + +++Y + R+ LR K +N+++KN+D +
Sbjct: 95 VLNFTPLNNRSIRIMY-------SHRDPSLR------------KSGTANIFIKNLDKAID 135
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L FS G I S K+ D G++KG+GFV F + E A A++ +G +++ K +YV
Sbjct: 136 HKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYV 195
Query: 367 AIAQRKEDRQAHL 379
RK+DR+ L
Sbjct: 196 GHFLRKQDRENAL 208
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 258/611 (42%), Positives = 371/611 (60%), Gaps = 32/611 (5%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +V +G+LFD FS+ + S RVC+D S Y YVNF +P DA +A+EV
Sbjct: 34 SLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEV 93
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T L+GK +RI +S RDP R+SG AN+F+KNL IDN L E F +FG ++SCKVA
Sbjct: 94 LNFTPLNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGPVLSCKVA 153
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
+G+SKG+GF+QFE EE A +AI LNG V D+ +YVG F+++ +R+ + + K+TN
Sbjct: 154 VDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFVRRLERIEANGSPKFTN 213
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL ++E L + FS +G I S ++ +D+NG SRGFGFVNF +PD A A+E +N
Sbjct: 214 VYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLN 273
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G KV Y RAQ+K ERE L+ +FE++R R K K +N+Y+KN+ D + +E LK
Sbjct: 274 GMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERLKE 333
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS+ G+ITS KVM D++G++KG GFV FS+PEEAS+A++ +G M+ +KPLYVAIAQR+
Sbjct: 334 LFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVAIAQRR 393
Query: 373 EDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP----------PGIVSQVPPRP- 421
E+R A LQ ++Q I+ +PSG P + TP G +PP+P
Sbjct: 394 EERMARLQAHFSQ----IQAPGLPTLPSGLPGYHPGTPRLAPHQLYFGQGTPGMMPPQPA 449
Query: 422 GLMYQPL---GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHY 478
G +QP G+R N +P +Q+ + G GN
Sbjct: 450 GYSFQPQLLPGMRAAVGPNFVMP-----YQLQRQGQQGQRMGMRPG---GNHQQMQQQQL 501
Query: 479 MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELN----KGSGVSLGTFNSGGVMARKPD 534
+ +++ + N + G S VP G + + + SG+ + ++
Sbjct: 502 LHRNTNQGV--RYVGNARNGIDSSVVPQGFVGPVMPLPFEASGMPITPSHAQPTTPVPIS 559
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
L LA+ +PE + +LGE+LYPLVE +PD VAK+TGMLLEMD +E+L L+ESP++L
Sbjct: 560 TLTTALASATPENRMMMLGEQLYPLVECLEPDHVAKVTGMLLEMDQTEVLHLIESPDALK 619
Query: 595 VKVEEAVQVLK 605
KV EA+QVL+
Sbjct: 620 KKVAEAMQVLQ 630
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 281/648 (43%), Positives = 380/648 (58%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG V N R +
Sbjct: 480 TTQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVA 537
Query: 523 FNSGGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEK 562
R P L AP P ++QKQ+LGERL+PL++
Sbjct: 538 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 281/654 (42%), Positives = 386/654 (59%), Gaps = 71/654 (10%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T S+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK LRI WS RDP RKSG+ N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SC V E+G SKG+GFV FET E+A AIE +NG + ++++VG+F + +R
Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DDD+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDDIDDERLQKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGY----------PSLYYTTP 410
KPLYVA+AQRKE+RQA+L +Y Q MA + + PSGY + YY P
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY--P 418
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-- 467
P ++Q+ P P W A G RP FQ P + P R M
Sbjct: 419 PSQITQLRPSP-----------RWTAQG----ARPHPFQNKPSAIRPGAPRVPFSTMRPA 463
Query: 468 GNMLPQVGAHYMQQSSQSAASSKDSSNQQKG--------------------GQSKYVPNG 507
+ +P+V S+Q A ++S Q G + KY
Sbjct: 464 SSQIPRV------MSTQRVA---NTSTQTVGPRPAAAAAAAAAATPAVRTVARYKYAAGV 514
Query: 508 R--IRELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHK 564
R + LN V T V + + L LA+ P++QKQ+LGERL+PL++
Sbjct: 515 RNPQQHLNAQPQV---TMQQPAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMH 571
Query: 565 PDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
P L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 572 PTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAVN 625
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 281/654 (42%), Positives = 386/654 (59%), Gaps = 71/654 (10%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T S+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK LRI WS RDP RKSG+ N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SC V E+G SKG+GFV FET E+A AIE +NG + ++++VG+F + +R
Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DDD+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDDIDDERLQKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGY----------PSLYYTTP 410
KPLYVA+AQRKE+RQA+L +Y Q MA + + PSGY + YY P
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY--P 418
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-- 467
P ++Q+ P P W A G RP FQ P + P R M
Sbjct: 419 PSQITQLRPSP-----------RWTAQG----ARPHPFQNKPSAIRPGAPRVPFSTMRPA 463
Query: 468 GNMLPQVGAHYMQQSSQSAASSKDSSNQQKG--------------------GQSKYVPNG 507
+ +P+V S+Q A ++S Q G + KY
Sbjct: 464 SSQIPRV------MSTQRVA---NTSTQTVGPRPAAAAAAAAAATPAVRTVARYKYAAGV 514
Query: 508 R--IRELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHK 564
R + LN V T V + + L LA+ P++QKQ+LGERL+PL++
Sbjct: 515 RNPQQHLNAQPQV---TMQQPAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMH 571
Query: 565 PDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
P L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 572 PTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAVN 625
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 279/644 (43%), Positives = 377/644 (58%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPALRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + + Q GG V + R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQSLAPRAAVAAAAPRAVAPYKY 525
Query: 527 GVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEKHKPD 566
R P L AP P ++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAMQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 277/630 (43%), Positives = 378/630 (60%), Gaps = 68/630 (10%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P SLYVGDL +VTD +L+D F++ + SVRVC+D TT RS YGYVN+ SP DA RA+
Sbjct: 36 PTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARAL 95
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
++ N T + K +RI +S RDP RKSG N+F+KNL ++ID+ L + F +FGNI+SCK
Sbjct: 96 DILNFTPFNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILSCK 155
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY 190
VAT G+S+G+GFVQF+ EE+A AI+ LNG + DK++YVG F++K +R S K+
Sbjct: 156 VATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSAS-NKKF 214
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
N+++KNL TEE L F ++G+I S +I RD +G S+ FGFVNF+N D A +A+E+
Sbjct: 215 NNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVES 274
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+NG I K Y +AQKK+ERE L+ QFE+ KE + KY+G N+Y+KN+DD ++DE L
Sbjct: 275 LNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENL 334
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
K FS G ITS KVMRD GI++G GFV FS+PEEAS+A+ +G M+ KPLYVA+AQ
Sbjct: 335 KELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQ 394
Query: 371 RKEDRQAHLQLQYAQH----MAGIEGSSANVIPSGYPS-----LYYTTPPGIVSQVPPRP 421
RKE+R+A LQ Q++Q MA G + G P LY PP + +PP+
Sbjct: 395 RKEERRARLQAQFSQMRPVAMAPSVGPRMPIYSPGAPGMGQQFLYGQGPP---TMIPPQG 451
Query: 422 GLMYQPL---GLRTGW--RANGFVP-------PTRPAFQVSPLPVNPKHNRQNRGRMNGN 469
G YQ G+R G N FVP R + +PV + N+Q M+
Sbjct: 452 GFGYQQQLVPGIRPGGAPMPNFFVPMVQQGQQGQRHGGRRGAVPV--QQNQQPVPLMHQQ 509
Query: 470 MLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT----FNS 525
MLP+ G+ P GR GV+ G ++
Sbjct: 510 MLPR-------------------------GRVYRYPPGRNMPDVPMPGVAGGMLSVPYDM 544
Query: 526 GGVMARKPDMLNGM----------LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGML 575
GG+ R D G LA SPE Q+ +LGE LYPLV++ + + AK+TGML
Sbjct: 545 GGMPIR--DAAAGQPVPITALATALANASPEHQRTLLGESLYPLVDQLEHESAAKVTGML 602
Query: 576 LEMDNSELLLLLESPESLAVKVEEAVQVLK 605
LEMD +E+L LLESPE+L KV EA++VL+
Sbjct: 603 LEMDQTEVLHLLESPEALKAKVAEAMEVLR 632
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASK 349
Y +++YV ++D +VTD +L F+Q G + S +V RD + G+G+V ++SP++A++
Sbjct: 34 YMPTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAAR 93
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++ + + KP+ + + R
Sbjct: 94 ALDILNFTPFNNKPIRIMYSHR 115
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 279/644 (43%), Positives = 376/644 (58%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPALRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + + Q GG V R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYKY 525
Query: 527 GVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEKHKPD 566
R P L AP P ++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 274/646 (42%), Positives = 381/646 (58%), Gaps = 54/646 (8%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T S+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK LRI WS RDP RKSG+ N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SC V E+G SKG+GFV FET E+A AIE +NG + ++++VG+F + +R
Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DDD+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGY----------PSLYYTTP 410
KPLYVA+AQRKE+RQA+L +Y Q MA + + PSGY + YY P
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY--P 418
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-- 467
P ++Q+ P P W A G RP FQ P + P R M
Sbjct: 419 PSQIAQLRPSP-----------RWTAQG----ARPHPFQNKPSAIRPGAPRVPFSTMRPA 463
Query: 468 GNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------------RELN 513
+ +P+V + ++ + + + P R + LN
Sbjct: 464 SSQIPRVTSTQRVANTSTQTVGPRPAAAAAAAAAAATPAVRTVPRYKYAAGVRNPQQHLN 523
Query: 514 KGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKIT 572
V T V + + L LA+ P++QKQ+LGERL+PL++ P L KIT
Sbjct: 524 AQPQV---TMQQPAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKIT 580
Query: 573 GMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
GMLLE+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 581 GMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAVN 626
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 266/630 (42%), Positives = 377/630 (59%), Gaps = 58/630 (9%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL VTD +L+D F++ + SVRVC+D T+ RS YGYVN+ +P DA RA+E+
Sbjct: 26 SLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEM 85
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T L+G +R+ +S RDP RKSG N+F+KNL ++ID+ L + F FGNI+SCKVA
Sbjct: 86 LNFTPLNGSPIRVMYSHRDPTIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 145
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQF++EE+A AIE LNG + DK++YVG F++K +R + ++ N
Sbjct: 146 TDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKMRFNN 205
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL TEE L + F +FG I S+++ RD +G S+ FGFVNF+N +DA +A+EA+N
Sbjct: 206 VFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALN 265
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I K + +AQKK ERE L+ +FE+ KE K++G+N+Y+KN+DD + DE+LK
Sbjct: 266 GKKIDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKLKE 325
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS GTITS KVMRD GI++G GFV FS+PEEAS+A+ +G ++ KPLYVA+AQRK
Sbjct: 326 LFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKIVVSKPLYVALAQRK 385
Query: 373 EDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP--PGIVSQVPPRPGLMYQPLGL 430
EDR+A LQ Q++Q + PS P + P PG+ Q+ Y
Sbjct: 386 EDRRARLQAQFSQM------RPVAMAPSVGPRMPMYPPAGPGLGQQI------FYGQAPP 433
Query: 431 RTGWRANGF------VPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQ 484
GF VP RP +P+P +P V Q
Sbjct: 434 AIIPPQPGFGYQQQLVPGMRPG--GAPMP--------------NFFVPMVQQGQQGQRPG 477
Query: 485 SAASSKDSSNQQKGG--QSKYVPNGRIRELNKG--------SGVSLGT----FNSGGVMA 530
+ +QQ Q + +P GR+ G +GV+ G ++ GG+
Sbjct: 478 GRRAGAGQQSQQPVPLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLPVPYDMGGMPM 537
Query: 531 RKPDMLNGM--------LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSE 582
R + + LA +P+QQ+ +LGE LYPLVE+ +P+ AK+TGMLLEMD +E
Sbjct: 538 RDAALSQSIPVGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTE 597
Query: 583 LLLLLESPESLAVKVEEAVQVLKLSEAKVS 612
+L LLESPE+L KV EA++VL+ + + +
Sbjct: 598 VLHLLESPEALKAKVNEAMEVLRTVQQQAT 627
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 27/191 (14%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +L++ VT+ L + F++ G++ S+ + RD + S G+G+VN+ NP DA RALE
Sbjct: 25 TSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALE 84
Query: 250 A-----MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+NGS I +V+Y+ R I K N+++KN+D
Sbjct: 85 MLNFTPLNGSPI--RVMYS-------------------HRDPTIRKSGAGNIFIKNLDKA 123
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ + L FS G I S KV D G +KG+GFV F S E A KA+ +G +L+ K +
Sbjct: 124 IDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQV 183
Query: 365 YVAIAQRKEDR 375
YV RK++R
Sbjct: 184 YVGPFLRKQER 194
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 279/644 (43%), Positives = 375/644 (58%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPALRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + Q GG V R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYKY 525
Query: 527 GVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEKHKPD 566
R P L AP P ++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 281/648 (43%), Positives = 379/648 (58%), Gaps = 62/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E F +FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQVGGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPT 479
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG V N R +
Sbjct: 480 TTQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAATAPRAVA 537
Query: 523 FNSGGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEK 562
R P L AP P ++QKQ+LGERL+PL++
Sbjct: 538 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 597
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 598 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 270/630 (42%), Positives = 373/630 (59%), Gaps = 43/630 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL + IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDPIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G+SKG+GFV FETEESAN +IE +NG + +K++YVGRFI + +R L A
Sbjct: 122 AQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+TEE L + F KFG I S + ++G SRGFGFV F+ P+DA A++
Sbjct: 182 FTNVYVKNFGEDLTEEALRDMFEKFGPITSHRVM-TKDGKSRGFGFVAFEKPEDAEEAVQ 240
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG + KVLY RAQKK ER+ L+ +FE+ + ER+ +Y G N+YVKN+DD + DE
Sbjct: 241 KLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDE 300
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM DE G +KGFGFVCFS+P+EA+KAV +G ++ KPLYVA+
Sbjct: 301 RLRKEFAPYGTITSAKVMLDE-GRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVAL 359
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
AQRKE+R++HL QY Q + + + S + T ++Q G P+
Sbjct: 360 AQRKEERKSHLASQYIQRVNSLRMQHIGQVYQQSGSYFMPT----IAQPQRFYGPQVAPV 415
Query: 429 GLRTGWRANGFVPPTRPAFQVSP------LP-VNPKHNRQNRGRMNGNM----------- 470
W AN + P V+ P + H N+ R GN+
Sbjct: 416 RTAPRWSANAQMRPNAGNQNVAANAPAGGYPAMTAAHVANNQYRQAGNVRGANQQAPNAQ 475
Query: 471 LPQVGAHYMQQSSQSAASSKDSSNQQK--------GGQSKYVPNGRIRELNKGSGVSLGT 522
Q + M+ +++ + ++N Q GQ++ PN + + + V
Sbjct: 476 SAQANSAAMRNAARPITGQQTAANMQTRPVAPQLAAGQAR-TPNYKFTQSMRNPQVPQPV 534
Query: 523 FNSGGVMARKPDMLNG-------MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGML 575
+A++ ++ G MLAA P +QKQ+LGERL+PL+E P+L KITGML
Sbjct: 535 PIPAQPVAQQAVIVKGQEPLTTSMLAAAQPAEQKQMLGERLFPLIELMYPNLAGKITGML 594
Query: 576 LEMDNSELLLLLESPESLAVKVEEAVQVLK 605
LE+DNSELL +LE ESL K EEAV VL+
Sbjct: 595 LEIDNSELLHMLEHKESLNAKAEEAVAVLQ 624
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 280/624 (44%), Positives = 376/624 (60%), Gaps = 54/624 (8%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL V D +LFD FS+ S+ SVRVC+D T S Y YVNF SP DA RA+E+
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEM 102
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++GK +RI +S RDP +RKSG AN+F+KNL +SIDN L + F FGNI+SCKVA
Sbjct: 103 LNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVA 162
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAKY 190
T G+SKG+GFVQ+E +ESA AI LNG + DK++YVG F++K +R V SP K+
Sbjct: 163 TEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSP--KF 220
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
N+++KNL TE++L E F FG I S+++ R ++G SR FGFVNF+NPDDA A+E
Sbjct: 221 NNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVED 280
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE- 309
+NG K LY RAQKK+ERE L+ FE+ KE + +G+N+Y+KN+D V D+E
Sbjct: 281 LNGKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEK 340
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK F++ GTITS KVMRD G+NKG GFV F S E+A++A+ +G M+ KPLYVA+A
Sbjct: 341 LKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALA 400
Query: 370 QRKEDRQAHLQLQYAQH---MAGIEGSSANVIPSGYPS----LYYTTPPGIVSQVPPRPG 422
QRKE+R+A LQ Q++Q M + P G P L+Y PP V P+PG
Sbjct: 401 QRKEERRARLQAQFSQMRPVMPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAF--VNPQPG 458
Query: 423 LMYQPLGLRTGWRANGFVPPTRPAFQVSPLP--VNPK-HNRQNRGRMNGNMLPQVGAHYM 479
+Q +P RP V+P+P V P Q R +G + GA M
Sbjct: 459 YGFQ----------QHMIPGMRPG--VAPMPNFVMPMVQQGQQPQRPSGR---RAGAGGM 503
Query: 480 QQSSQSAASSKDSSNQQ---KGGQSKY-------VPNGRIRELN--KGSGVSLGTFNSGG 527
QQ +QQ +GG+ Y +P R + S +G G
Sbjct: 504 QQPMPMG-------HQQMVPRGGRGGYRYASGRGMPEAAFRGVGGMAPSLYEMGRMTPGD 556
Query: 528 VMARK---PDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELL 584
A + L LA PEQQ+ +LGE LYPLV++ + D AK+TGMLLEMD +E+L
Sbjct: 557 TGAPQQVSSGALASALANSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVL 616
Query: 585 LLLESPESLAVKVEEAVQVLKLSE 608
L+ESP++L KV EA++VL+ ++
Sbjct: 617 HLIESPDALKSKVAEAMEVLRSAQ 640
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 266/615 (43%), Positives = 375/615 (60%), Gaps = 41/615 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLY GDL P VT+ LFD F ++ SVRVC+D RS Y Y+NF +P+DA RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T L + +RI S RDP R SG N+F+KNL SIDN L E F +FG I+SCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A G+SKG+GFVQFE EESA AAI+ LNG + DK+++VG FI++ +R +P +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL ++ E+ L + F KFG I+S ++ RD++G SR FGFVNF+ + A A+E
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG +G VLY RAQKK+ERE+ LR +FE++R R K +G+N+Y+KN+DD V DE+
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS+ G +TS+KVM + +G+++GFGFV +S+PEEA +A++ +G M+ RKPLY+A+A
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP-GLMYQPL 428
QRKEDR+AHLQ++ M+G +P +Y S VP +P G +QP
Sbjct: 408 QRKEDRRAHLQIRAPGPMSGFHHPPGGPMPGPPQHMYVGQ--NGASMVPSQPIGYGFQPQ 465
Query: 429 ---GLRTGWRANGFV--------PPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAH 477
G+R G F+ P T P N + + Q + M+ N P G
Sbjct: 466 FMPGMRPGSGPGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRN--PSPGMR 523
Query: 478 YMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM-- 535
YM +S + G VP G + ++ + +K +
Sbjct: 524 YMNGASNG-----------RNGMDSSVPQG------ILPPIIPLPIDASSISHQKAPLLP 566
Query: 536 ---LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPES 592
L LA+ SP + ++LGE+LYPLVE+H+P VAK+TGMLLEMD +E+L L+ESPE+
Sbjct: 567 ISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEA 626
Query: 593 LAVKVEEAVQVLKLS 607
L KV EA+ VL+LS
Sbjct: 627 LKSKVSEALDVLRLS 641
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 269/615 (43%), Positives = 377/615 (61%), Gaps = 54/615 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL PDVT+ L++ FS S+ S+RVC+D T RS Y YVNF P A +A++
Sbjct: 13 ASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALD 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ RI W RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCK+
Sbjct: 73 TMNFDPIKGRPCRIMWQQRDPSLRKSGVGNIFIKNLDKSIDNKSLYDTFSAFGNILSCKI 132
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G KG+GFV FETE++A AI ++G + DK+++VGR++ K +R+ + + K
Sbjct: 133 AQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKMGTQPKK 192
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E + E ++ GKI SL + D G S+GFGFV+F+ P++A A+
Sbjct: 193 FTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVN 252
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG IG + L+A RA+K+AER ++ + E+KR+ERI +++G N+Y+KN+DD + DE
Sbjct: 253 VLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDER 312
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTI+SAKVM+D+KG +KGFGFVCFSSPEEA+KAV +G +L KPLYVA+A
Sbjct: 313 LREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALA 372
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QR+E+R+A L AQHM I G + G + P QV PR G+
Sbjct: 373 QRREERKAQLA---AQHMHRISGLRMH---QGQRPFFTPQMP----QVRPRWGM------ 416
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYM-QQSSQSAAS 488
PP + Q+ P V QN G G +PQ G M + Q A
Sbjct: 417 -----------PPQQQQQQMRPTGV------QNMGGQAG--MPQGGPAGMPRMPVQQARM 457
Query: 489 SKDSSNQQKGGQSKYV----PNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPS 544
+Q S+ V P G++ E G G+ GG P +LAA +
Sbjct: 458 GGVPPQRQPYKFSQTVRNPPPAGQMPE--GGQGI------PGGQEPLNPS----VLAAAT 505
Query: 545 PEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
P++QKQ+LGERL+PL++ + PD+ KITGMLLE+DN+ELL +LES ++L +KV+EAV VL
Sbjct: 506 PQEQKQMLGERLFPLIQTNHPDMAGKITGMLLEIDNAELLHMLESRDALQMKVDEAVSVL 565
Query: 605 KLSEAKVSTQEAIHP 619
+ +AK ST A P
Sbjct: 566 RAHQAKESTTAAAAP 580
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G++ S +V RD + G+ +V F P A K
Sbjct: 10 YPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEK 69
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + + +P + QR
Sbjct: 70 ALDTMNFDPIKGRPCRIMWQQR 91
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 280/648 (43%), Positives = 386/648 (59%), Gaps = 63/648 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 33 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 92
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 93 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 152
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 153 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 211
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +++L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 212 FTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 271
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 272 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 331
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 332 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 390
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-------GY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I S GY P++ YYT P
Sbjct: 391 QRKEERKAHLTNQYMQRVAGMRALPANAILSQFQPAAGGYFVPAVPQAQGRPPYYT--PN 448
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 449 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPT 501
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG VP+ R + ++
Sbjct: 502 TTQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPAAVPSLAPRATVAAAPRAVAP 559
Query: 523 FNSGGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEK 562
+ + R P L AP P ++QKQ+LGERL+PL++
Sbjct: 560 YKYAASV-RSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 618
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 619 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 666
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 30 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 87
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 88 ERALDTMNFDVIKGKPIRIMWSQR 111
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 269/633 (42%), Positives = 369/633 (58%), Gaps = 56/633 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ L GK +RI WS RDP RKSGV N+F+KNL +SIDN + + F FGNI+SCKV
Sbjct: 71 TMNYDPLKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + KR++VG+FI K+ ++ L A +
Sbjct: 131 AQDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFIPRKEREKELGEKAKR 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D +++ L E F K+G+I S + ++G S+GFGFV F++P+ A +A+
Sbjct: 191 FTNVYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVA 250
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
++NG ++ K L+ RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKNIDD++ DE
Sbjct: 251 SLNGKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVNLYVKNIDDNIDDE 310
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+ GTITSAKVM E G +KGFGFVCFSS EEA+KAV +G ++ KPLYVA+
Sbjct: 311 RLRKEFTPFGTITSAKVML-EDGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYVAL 369
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
AQRKEDR+AHL QY Q MA I G P ++ V +P P + P
Sbjct: 370 AQRKEDRKAHLASQYMQKMANIRMQQI-----GQPVFQPSSGGYFVPTIPQPPQRFFGPA 424
Query: 429 GL---RTGWRANGFVPPTRPAFQ----------------------------VSPLPVNPK 457
+ RT P +RP Q +S P+
Sbjct: 425 QMAQIRTATTRWPTQPQSRPGTQQPQTAYPAIPGPFRPGPRPQAAQPALRSISARPITGG 484
Query: 458 HNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSG 517
Q + M P V + Q+ + ++ + Q G + P +
Sbjct: 485 GPMQTQIPPRAPMPPTVSVNAAQRPTNYKYTANMRNPPQTLGHVAHQPQVQ--------- 535
Query: 518 VSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE 577
+ V ++P + MLA ++QKQ+LGERL+PL+ L KITGMLLE
Sbjct: 536 ------QAVHVQGQEP-LTTTMLADAPLQEQKQMLGERLFPLISAMYSKLAGKITGMLLE 588
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+DNSELL +LE ESL KVEEAV VL+ EAK
Sbjct: 589 IDNSELLHMLEHRESLKSKVEEAVAVLQAHEAK 621
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 17/195 (8%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P +L++ +L SDVTE L EKFS G + S+ + RD S G+ +VNF P DA
Sbjct: 6 PNYPMASLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN + K + +Q R+ LR K NV++KN+D
Sbjct: 66 ERALDTMNYDPLKGKPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDKS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ + FS G I S KV +DE G +KG+GFV F + E A+K+++ +G +L+ K +
Sbjct: 110 IDNKAMYDTFSTFGNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRV 169
Query: 365 YVAIAQRKEDRQAHL 379
+V +++R+ L
Sbjct: 170 FVGKFIPRKEREKEL 184
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 275/632 (43%), Positives = 380/632 (60%), Gaps = 60/632 (9%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL V D +L+D F++ + SVRVC+D +T RS YGYVN+ + H+A RA++
Sbjct: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T L+GK +RI +S RDP RKSG N+F+KNL +SIDN L + F FGNI+SCKVA
Sbjct: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+S+G+GFVQF+ EESA +AI+ LNG + DK+++VG F++K +R + ++ N
Sbjct: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNN 220
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL TE+ L + F +FG I S + RD +G S+ FGFVNFD+PDDA R++EA+N
Sbjct: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y +AQKK ERE L+ +FE+ KE K++G N+YVKN+DD ++D++LK
Sbjct: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS+ GTITS KVMRD GI++G GFV FS+ EEASKA+ +G M+ KPLYVA+AQRK
Sbjct: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400
Query: 373 EDRQAHLQLQYAQHMAGIEGSSANVIPSGYPS----LYYTTPPGIVSQVPPRPGLMYQPL 428
E+R+A LQ Q++Q + G + P P L+Y +PP+PG YQ
Sbjct: 401 EERRARLQAQFSQMRPPV-GPRMPMYPPVAPGLGQQLFYGQ---GPPIIPPQPGFGYQ-Q 455
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
L G R N FVP +P + N++ GR + G MQQ+ Q
Sbjct: 456 QLVPGMRPNYFVPMVQPG----------QQNQRPGGR-------RSGTGPMQQAQQPIPL 498
Query: 489 SKDSSNQQKGGQSKYVPNGRIRELNKGS------------GVSLGTFNSGGVMARKPDML 536
Q + +P GRI G G+ G ++ GG+ R
Sbjct: 499 M----------QPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFS 548
Query: 537 NGMLAA--------PSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLE 588
M SPEQQ+ +LGE LYPLV++ + D AK+TGMLLEMD +E+L LLE
Sbjct: 549 QPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLE 608
Query: 589 SPESLAVKVEEAVQVLKLSEAKVSTQEAIHPN 620
SPE+L KV EA++VL+ V+ Q+A P+
Sbjct: 609 SPEALKAKVAEAMEVLR----NVAQQQATGPS 636
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 161/296 (54%), Gaps = 17/296 (5%)
Query: 93 DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEE 151
DAR+ +L+V +L S+++ +L ++F G ++S +V +S G+G+V +
Sbjct: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
Query: 152 SANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF 211
A A++ LN T + K I + + + + S A N+F+KNLD + + L + F
Sbjct: 93 EATRALDELNFTPLNGKPIRI-MYSYRDPTIRKSGAG---NIFIKNLDKSIDNKALHDTF 148
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
S FG I S +A D G SRG+GFV FDN + A+ A++ +NG ++ K ++ +K E
Sbjct: 149 STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208
Query: 272 REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG 331
RE K + +NVYVKN+ + T+++LK F + G ITS VMRD G
Sbjct: 209 RESTAD------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG 256
Query: 332 INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHM 387
+K FGFV F P++A+++V +G K YV AQ+K +R+ L+ ++ Q +
Sbjct: 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 263/628 (41%), Positives = 377/628 (60%), Gaps = 50/628 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDLH V D +LFD FS+ + SVRVC+D + +S Y YVN+ + DA RA+E+
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++GK +RI +S RDP +RKSG N+F+KNL +SIDN L + F FGNI+SCK+A
Sbjct: 96 LNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIA 155
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+S+G+GFVQFE +ESA +AI+ LNG + DK+++VG F++K DR S K++N
Sbjct: 156 TDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSN 215
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL VT++ L E F K+G I S ++ RD +G SR FGFVNF+N D A +A++ +N
Sbjct: 216 VYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELN 275
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + K LY RAQKK+ERE L+ +FE+ +E K++ +N+Y+KN+++++ DE+L+
Sbjct: 276 GKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRE 335
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F++ G ITS KVMRD G+++G GFV F S E+A++A+ +G M+ KPLYVA+AQRK
Sbjct: 336 LFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRK 395
Query: 373 EDRQAHLQLQYAQH----MAGIEGSSANVIPSGYPS----LYYTTPPGIVSQVPPRPGLM 424
EDR+A LQ Q++Q MA G + P G P L+Y PP P +
Sbjct: 396 EDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPP---------PAFI 446
Query: 425 YQPLGLRTGWRANGFVPP-TRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
L G R G +P P Q P P GR G M + QQ
Sbjct: 447 NPQQPLMPGMRPGGPMPNFMMPMVQQGQQPQRPA------GRRAGGMQQPMPMGGQQQVF 500
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIRE---LNKGSGVSLGTFNSGGVMARKP------- 533
+GG+ P GR ++ V ++ GG+ R+
Sbjct: 501 ------------PRGGRGYRYPTGRGMPDPGMHSVGAVMPPSYEMGGMPMREAAPQPVPI 548
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
L LA P+QQ+ +LGE LYPLVE+ + + AK+TGMLLEMD +E+L LLESP++L
Sbjct: 549 GALATALANAPPDQQRLMLGENLYPLVEQLEREQAAKVTGMLLEMDQTEVLHLLESPDAL 608
Query: 594 AVKVEEAVQVLK----LSEAKVSTQEAI 617
KV EA++VL+ L ++ VST++ +
Sbjct: 609 KAKVAEAMEVLRSAQHLQQSNVSTEQQL 636
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 266/609 (43%), Positives = 367/609 (60%), Gaps = 31/609 (5%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
+ P+ ASLYVGDL +VTD +L D FS+ + S+RVC+DSTT RS YGYVN+
Sbjct: 161 IGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDL 220
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++V N T L+GK +RI +S RDP RKSG N+F+KNL + ID+ L + F F
Sbjct: 221 EDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAF 280
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
GNI+SCKVAT G SKGHGFVQF++EE+A AI+ LNG + DK+++VG F++K +R
Sbjct: 281 GNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERES 340
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
K+ N+F+KN+ +TEE L F +FG I S+++ RD +G S+ FGFVNF+N DD
Sbjct: 341 TINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDD 400
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A ++EA+NG K Y +AQKK+ERE L+ +FE+ KE + K++G+N+Y+KN+DD
Sbjct: 401 AAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDD 460
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ D++LK F+Q GTITS KVMRD G+++G GFV FSSPEEAS+A+ + M+ KP
Sbjct: 461 SIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKP 520
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGL 423
LYVA+AQRKEDR+A LQ Q++Q S YP + PG+ Q +
Sbjct: 521 LYVALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPP----SGPGLGQQ------M 570
Query: 424 MYQPLGLRTGWRANGF------VPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAH 477
Y GF VP RPA P+P Q + + GA
Sbjct: 571 FYGQAPPAIIPPQPGFGYQQQLVPGMRPA--GPPMPNFFVPIVQQGQQGQRPGGRRAGAV 628
Query: 478 YMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP-DML 536
MQQ+ Q + + +P GR+ G G+S + P L
Sbjct: 629 PMQQTQQQVPLMQ----------QQMLPRGRVFRYPPGRGLS--DVPMPAISQSIPVGAL 676
Query: 537 NGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
LA P +Q+ +LGE LYPLVE+ +P++ AK+TGMLLEMD +E+L LLESP++L K
Sbjct: 677 ATALANAPPAEQRTMLGENLYPLVEQLEPEMAAKVTGMLLEMDQTEVLHLLESPDALKAK 736
Query: 597 VEEAVQVLK 605
V EA++VL+
Sbjct: 737 VAEAMEVLR 745
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/427 (31%), Positives = 216/427 (50%), Gaps = 68/427 (15%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD------- 65
SLYVGDL +V D +L+D FS+ ++ SVRVC+D +T RS YGYVN+ +P D
Sbjct: 31 SLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDEKEKETI 90
Query: 66 --------------AI-----------------RAIEVK----NHTQLHGKMLRI----- 85
AI R E++ N ++ G+M +
Sbjct: 91 YEGFCVFCLIPSNYAIFFVLGFSYIHKKRRGKERGGELQKRELNFLRVGGEMAEVQDHEG 150
Query: 86 --SWSCRDPDARKS--GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSK 140
S + +P+ S A+L+V +L ++ + +L ++F ++S +V S +S
Sbjct: 151 LLSGTNDEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSL 210
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V + E A A++ LN T + K I I S R + N+F+KNLD
Sbjct: 211 GYGYVNYTDLEDAARALDVLNFTPLNGKPIR----IMYSHRDPSIRKSGTGNIFIKNLDK 266
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ + L + FS FG I S +A D +G S+G GFV FD+ + A++A++ +NG ++ K
Sbjct: 267 GIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQ 326
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
++ +K ERE + K K +NV+VKNI + +T+E+L F + G I
Sbjct: 327 VFVGPFVRKQERESTIN------------KEKFNNVFVKNISEGMTEEDLTRIFGEFGPI 374
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
TS VMRD G +K FGFV F + ++A+ +V +G K YV AQ+K +R+ L+
Sbjct: 375 TSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELK 434
Query: 381 LQYAQHM 387
++ Q+M
Sbjct: 435 SRFEQNM 441
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 37/218 (16%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +L+ +V + L + FS+ G + S+ + RD S G+G+VN+ NP D +
Sbjct: 30 TSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDEKEKET 89
Query: 250 AMNG--------------SVIGSKVLYAARAQKK-----AERE-QILR---HQFEEKRKE 286
G V+G ++ R K+ +RE LR E + E
Sbjct: 90 IYEGFCVFCLIPSNYAIFFVLGFSYIHKKRRGKERGGELQKRELNFLRVGGEMAEVQDHE 149
Query: 287 RIL------------KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK 334
+L ++ +++YV ++D +VTD +L FSQ + S +V RD
Sbjct: 150 GLLSGTNDEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRS 209
Query: 335 -GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
G+G+V ++ E+A++A++ + L+ KP+ + + R
Sbjct: 210 LGYGYVNYTDLEDAARALDVLNFTPLNGKPIRIMYSHR 247
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 276/648 (42%), Positives = 385/648 (59%), Gaps = 56/648 (8%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK LRI WS RDP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GN++SCKV E+G SKG+GFV F T E+A AIE +NG + D +++VGRF + +R
Sbjct: 123 GNVLSCKVVCDENG-SKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + D++G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDAIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PS 404
+PLYVA+AQRKE+RQA+L +Y Q A + VI PSGY +
Sbjct: 361 EPLYVALAQRKEERQAYLTNEYMQRKASVPAVPNPVINPYQPAPPSGYFMAAVPQTQNRA 420
Query: 405 LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ-- 461
Y+ PP +Q+ P P W A G RP FQ P ++P R
Sbjct: 421 AYH--PPSQTAQLRPSP-----------CWTAQG----ARPHPFQNKPGAIHPAAPRVPF 463
Query: 462 NRGRMNGNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RE 511
N R + +P+V + S+++ ++ VP + +
Sbjct: 464 NTMRPASSRVPRVMSPQRVANTSTKTVGPRPAAAAAAATPAVHTVPRYKYAVGVRNPQQH 523
Query: 512 LNKGSGVSLGTFNSGGVMARKPDMLN-GMLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
LN V + V + + L MLA+ P++QKQ+LGERL+PL++ P L K
Sbjct: 524 LNAQPQVKM---QQPAVHVQGQETLTAAMLASAPPKEQKQMLGERLFPLIQAMHPTLAGK 580
Query: 571 ITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
ITGMLLE DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 581 ITGMLLETDNSELLHMLESPESLCSKVDEAVVVLQAHQAKEATQKAVN 628
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 279/623 (44%), Positives = 375/623 (60%), Gaps = 54/623 (8%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVGDL V D +LFD FS+ S+ SVRVC+D T S Y YVNF SP DA RA+E+
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N T ++GK +RI +S RDP +RKSG AN+F+KNL +SIDN L + F FGNI+SCKVAT
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVAT 163
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAKYT 191
G+SKG+GFVQ+E +ESA AI LNG + DK++YVG F++K +R V SP K+
Sbjct: 164 EMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSP--KFN 221
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL TE++L E F FG I S+++ R ++G SR FGFVNF+NPDDA A+E +
Sbjct: 222 NVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDL 281
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE-L 310
NG K LY RAQKK+ERE L+ FE+ KE + +G+N+Y+KN+D V D+E L
Sbjct: 282 NGKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKL 341
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
K F++ GTITS KVMRD G+NKG GFV F S E+A++A+ +G M+ KPLYVA+AQ
Sbjct: 342 KELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQ 401
Query: 371 RKEDRQAHLQLQYAQH---MAGIEGSSANVIPSGYPS----LYYTTPPGIVSQVPPRPGL 423
RKE+R+A LQ Q++Q M + P G P L+Y PP V P+PG
Sbjct: 402 RKEERRARLQAQFSQMRPVMPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAF--VNPQPGY 459
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLP--VNPK-HNRQNRGRMNGNMLPQVGAHYMQ 480
+Q +P RP V+P+P V P Q R +G + GA MQ
Sbjct: 460 GFQ----------QHMIPGMRPG--VAPMPNFVMPMVQQGQQPQRPSGR---RAGAGGMQ 504
Query: 481 QSSQSAASSKDSSNQQ---KGGQSKY-------VPNGRIRELN--KGSGVSLGTFNSGGV 528
Q +QQ +GG+ Y +P R + S +G G
Sbjct: 505 QPMPMG-------HQQMVPRGGRGGYRYASGRGMPEAAFRGVGGMAPSLYEMGRMTPGDT 557
Query: 529 MARK---PDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
A + L LA PEQQ+ +LGE LYPLV++ + D AK+TGMLLEMD +E+L
Sbjct: 558 GAPQQVSSGALASALANSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLH 617
Query: 586 LLESPESLAVKVEEAVQVLKLSE 608
L+ESP++L KV EA++VL+ ++
Sbjct: 618 LIESPDALKSKVAEAMEVLRSAQ 640
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 281/628 (44%), Positives = 377/628 (60%), Gaps = 51/628 (8%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL V D +LFD FS+ S+ SVRVC+D T S Y YVNF SP DA RA+E+
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAMEM 102
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++GK +RI +S RDP +RKSG AN+F+KNL +SIDN L + F FG I+SCKVA
Sbjct: 103 LNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGTILSCKVA 162
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAKY 190
T G+SKG+GFVQ+E +ESA AI LNG + DK++YVG F++K +R V SP K+
Sbjct: 163 TEISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSP--KF 220
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
N+++KNL TE++L E F KFG I S+++ R ++G SR FGFVNF+NPDDA RA+E
Sbjct: 221 NNVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVED 280
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE- 309
+NG + K LY RAQKK+ERE L+ +FE+ KE K +G+N+Y+KN+D V D+E
Sbjct: 281 LNGKKLDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVDDDEK 340
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK F++ GTITS KVMRD G+NKG GFV F S E+AS+A+ +G M+ KPLYVA+A
Sbjct: 341 LKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAMNGKMVGSKPLYVALA 400
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+A LQ Q++Q + YP PG+ Q + Y
Sbjct: 401 QRKEERRARLQAQFSQMRPVVMPPPVAPRMPMYP----PGVPGMGQQ------MFYGQPP 450
Query: 430 LRTGWRANGF------VPPTRPAFQVSPLP--VNPK-HNRQNRGRMNGNMLPQVGAHYMQ 480
GF +P RP V+P+P V P Q R +G + GA MQ
Sbjct: 451 PPFVNPQPGFGFQQHMIPGMRPG--VAPMPNFVMPMVQQGQQPQRPSGR---RAGAGGMQ 505
Query: 481 QSSQSAASSKDSSNQQ---KGGQSKY-------VPNGRIRELNK--GSGVSLG--TFNSG 526
Q +QQ +GG+ Y +P+ R + S +G T N
Sbjct: 506 QPMPMG-------HQQMLPRGGRGGYRYASGRGMPDSPFRGVGGMVPSPYEMGRMTLNDN 558
Query: 527 GVMARKPD-MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
G + P L LA PEQQ+ +LGE LYPLV++ + D AK+TGMLLEMD +E+L
Sbjct: 559 GAPQQVPSGTLASALANSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLH 618
Query: 586 LLESPESLAVKVEEAVQVLKLSEAKVST 613
L+ESP++L KV EA+ VL+ ++ + S
Sbjct: 619 LIESPDALKSKVAEAMDVLRSAQQQTSA 646
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 281/635 (44%), Positives = 380/635 (59%), Gaps = 46/635 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 16 ASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 75
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCK+
Sbjct: 76 TMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKI 135
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E G S+G+GFV FETEE+A AIE +NG + K+++VGRF+ + +R VL K
Sbjct: 136 VCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRK 194
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASL-LIARDENGTSRGFGFVNFDNPDDARRAL 248
+ N+++KN ++ +E L + F +GKI S ++ D +G +GFGFV+F++P+ A +A+
Sbjct: 195 FNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAV 254
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
EA+NG+ K+LY RAQKK ER+ L+ +FE R ERI +Y+G N+YVKN+DD++ DE
Sbjct: 255 EALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNLDDNIDDE 314
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F+Q GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 315 RLRKEFAQFGTITSAKVM-TEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVAL 373
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG----IVSQVPPRPGLM 424
AQRKEDR+AHL QY Q + + + G S + PG V +P
Sbjct: 374 AQRKEDRKAHLASQYMQRITSMRMQGQQI---GQVSQMFQ--PGSAGYFVPTMPQAQRTY 428
Query: 425 YQP---LGLRTGWRANGFVPPT-RPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQ 480
+ P +R+ R V PT +P +P P+ RQ R N+ V A +
Sbjct: 429 FTPNNMPAMRSNPRWQTTVRPTGQPGSGFQTMPGAPQI-RQQRPTGQTNVRAGVSARPIT 487
Query: 481 -QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLG--TFNSGGVMARKPDMLN 537
QS A + NQQ GG+ P G + + G ++ G +M ++P
Sbjct: 488 GQSGTPNAQQRMPVNQQVGGR----PQGGQPTVPAAANRQQGYKSYGGGQMMKQQPGQTP 543
Query: 538 GMLAAP--------------------SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE 577
GM AP P++QKQ+LGERL+PL+ PDL KITGMLLE
Sbjct: 544 GMQQAPPQAVIVQGQDPLTATMLATAPPQEQKQMLGERLFPLISTMFPDLAGKITGMLLE 603
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVS 612
+DNSELL +LES ESL KV+EAV VL+ +AK S
Sbjct: 604 IDNSELLHMLESQESLEAKVKEAVAVLQAHQAKES 638
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 18/191 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L DVTE L EKFS G + S+ + RD S G+ +VNF P DA
Sbjct: 11 PSYPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 70
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN I + + +Q R + K NV++KN+D
Sbjct: 71 ERALDTMNFDTIKGRPIRIMWSQ----------------RDPSLRKSGVGNVFIKNLDKS 114
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S K++ DE G ++G+GFV F + E A A+ +G +L+ K +
Sbjct: 115 IDNKALYDTFSAFGNILSCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKV 173
Query: 365 YVAIAQRKEDR 375
+V + +R
Sbjct: 174 FVGRFMSRRER 184
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 272/631 (43%), Positives = 370/631 (58%), Gaps = 60/631 (9%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P SLYVGDL +V D +L+D F++ + SVRVC+D TT RS YGYVNF +P D
Sbjct: 27 PNQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSLGYGYVNFSNPQD 86
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++V N T L+ + +RI +S RDP RKSG AN+F+KNL ++ID+ L + F +FG
Sbjct: 87 AARALDVLNFTPLNNRPIRIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGL 146
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCK+AT G SKG+GFVQF++EESA AI+ LNG + DK++YVG F++K DR
Sbjct: 147 ILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRENAL 206
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
K+ N+++KNL T+E L++ F ++G I S +I RD +G SR FGFVNF+NPDDA
Sbjct: 207 SKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAA 266
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+E +NG + K Y +AQKK+EREQ L+ +FE+ KE KY+G N+Y+KN+DD +
Sbjct: 267 KAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRFEQSIKESADKYQGVNLYLKNLDDTI 326
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
+DE+LK F++ GTITS KVMRD GI +G GFV FS+PEEAS+A+ +G M+ KPLY
Sbjct: 327 SDEKLKEMFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNGKMIAGKPLY 386
Query: 366 VAIAQRKEDRQAHLQLQYAQ-HMAGIEGSSA---NVIPSGYPS-----LYYTTPPGIVSQ 416
VA+AQRKEDR+A LQ Q++Q I S A + P G P LY PP +
Sbjct: 387 VALAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAM--- 443
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
+PP+ G YQ VP RP G M +P V
Sbjct: 444 MPPQAGFGYQ----------QQLVPGMRPG----------------GGPMPSFFVPMVQQ 477
Query: 477 HYMQQSSQSAASS---KDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFN--SGGVMAR 531
Q + + Q + +P GR+ G + +GG+M+
Sbjct: 478 GQQGQRPGGRRGTGPVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDVPLQGVAGGMMSV 537
Query: 532 KPDM-----------------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGM 574
DM L LA PEQQ+ +LGE LYPLV++ + D AK+TGM
Sbjct: 538 PYDMGGLPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGM 597
Query: 575 LLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
LLEMD E+L L+ESP++L KV EA+ VL+
Sbjct: 598 LLEMDQPEVLHLIESPDALKAKVAEAMDVLR 628
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 280/652 (42%), Positives = 381/652 (58%), Gaps = 73/652 (11%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P+ TT SLYVGDL DV D +L+D F++ + SVR+C+D T +S YGYVNF + D
Sbjct: 19 PSMTT-ISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARD 77
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A +AI+V N T L+GK +RI +S RDP ARKSG AN+F+KNL ++ID+ L + F FGN
Sbjct: 78 AAKAIDVLNFTPLNGKTIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFGN 137
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCK+AT G+SKGHGFVQFE+EESA AI+ LNG + DK++YVG F +K DR
Sbjct: 138 ILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGPFQRKQDRESAL 197
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
K+ N+++KNL TE L F ++G I S ++ RD +G S+GFGFVNF N +DA
Sbjct: 198 SGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAA 257
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+EA+NG K Y +AQKK+ERE L+ + E+ KE + KY G+N+Y+KN+DD V
Sbjct: 258 KAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTKETVDKYHGTNLYIKNLDDSV 317
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DEEL+ FS+ GTITS KVMRD GI++G GFV FS E AS A+ +G M+ KPLY
Sbjct: 318 GDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGASWALGEMNGKMVAGKPLY 377
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQV-------- 417
VA+AQRKEDR+A LQ Q++Q A + NV P LY PGI Q+
Sbjct: 378 VALAQRKEDRRARLQAQFSQ--ARPVAITPNVSPRM--PLYPLGAPGIGQQLLYGQAAPS 433
Query: 418 -PPRPGLMYQPL---GLRTGWRANGFVPPTR---------------PAFQV-SPLPVNPK 457
P+ YQ G+R G N +VP + P Q+ PLP+
Sbjct: 434 MIPQAAFGYQQHFVPGMRPGGAPNFYVPLVQQGQQGQRSGGQRGAGPMQQLQQPLPL--- 490
Query: 458 HNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSG 517
M+ MLP +G +Y P ++ + + +G
Sbjct: 491 --------MHQQMLP------------------------RGHVYRYPPGSNMQNI-QLAG 517
Query: 518 VSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE 577
V G + G L LA +PEQQ+ +LGE LYPLV+K + + AK+TGMLLE
Sbjct: 518 VPGGMVSYGIGQPMPTQALASALANATPEQQRTMLGEALYPLVDKLEHETAAKVTGMLLE 577
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
MD E+L L+ESP++L KV EA+ VL+ KV+ Q++ P A +++N
Sbjct: 578 MDQPEVLHLIESPDALKAKVVEAMDVLR----KVTQQQSNSPADQLASLSLN 625
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 103/199 (51%), Gaps = 23/199 (11%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDD 243
+P+ +L++ +LD DV + L + F++ ++ S+ I RD S G+G+VNF N D
Sbjct: 18 NPSMTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARD 77
Query: 244 ARRALEAMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
A +A++ +N + + K ++Y+ R K +NV++KN
Sbjct: 78 AAKAIDVLNFTPLNGKTIRIMYSI-------------------RDPSARKSGAANVFIKN 118
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+D + + L FS G I S K+ D G +KG GFV F S E A A++ +G +++
Sbjct: 119 LDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLIN 178
Query: 361 RKPLYVAIAQRKEDRQAHL 379
K +YV QRK+DR++ L
Sbjct: 179 DKQVYVGPFQRKQDRESAL 197
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 267/625 (42%), Positives = 378/625 (60%), Gaps = 42/625 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D +++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREVELGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL +DV E+ L E FS+FGK+ S+ + RD +G SRGFGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE+
Sbjct: 250 HMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGMITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+A L QY Q ++ + + + S Y P VP PG
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRALGSPFLGSFQQPTSYFLP-----AVPQPPG------- 416
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASS 489
+ + + +PP +PA + + P P+ + + R G M + AH S
Sbjct: 417 -QAAYYGSSSMPPPQPAPRWTSQP--PRSSSASMVRPPG-MSRRPSAHISSMRQASTQVP 472
Query: 490 KDSSNQQKGGQSKYVPNGRIRELNKGSGVSL---------GTFNSGGVM-------ARKP 533
+ + Q+ G + G+G + T N+ V ++P
Sbjct: 473 RPLPHTQRVANIGTQTTG-----SSGTGCCMPGRPLLPYKSTHNTHRVQEPAVHVPGQEP 527
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
+ MLAA +QKQ++GERLYPL+ + + L KITGMLLE+DNSELLL+LESPESL
Sbjct: 528 -LTVSMLAAAPLHEQKQMIGERLYPLIREVQSQLAGKITGMLLEIDNSELLLMLESPESL 586
Query: 594 AVKVEEAVQVLKLSEAKVSTQEAIH 618
KVEEAV VL+ +A ++ ++H
Sbjct: 587 HAKVEEAVAVLQEHQAMEQSKVSMH 611
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + M+ +P+ + +QR
Sbjct: 68 ALDTMNFEMIKGQPIRIMWSQR 89
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 271/630 (43%), Positives = 380/630 (60%), Gaps = 47/630 (7%)
Query: 3 VVPPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
VV T P +SLY GDL P VT+ LFD F ++ SVRVC+D RS Y Y+NF
Sbjct: 39 VVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFS 97
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
+P+DA RA+E N+T L + +RI S RDP R SG N+F+KNL SIDN L E F
Sbjct: 98 NPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+FG I+SCKVA G+SKG+GFVQFE EESA AAI+ LNG + DK+++VG FI++ +R
Sbjct: 158 SFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
Query: 182 VLP--SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
+P ++TN+++KNL ++ E+ L + F KFG I+S ++ RD++G SR FGFVNF+
Sbjct: 218 ARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFE 277
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ A A+E MNG +G VLY RAQKK+ERE+ LR +FE++R R K +G+N+Y+K
Sbjct: 278 CTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLK 337
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+DD V DE+LK FS+ G +TS+KVM + +G+++GFGFV +S+PEEA +A++ +G M+
Sbjct: 338 NLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMI 397
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQ-----HMAGIEGSSANVIPSGYPSLYYTTPPGIV 414
RKPLY+A+AQRKEDR+AHLQ ++Q M+G +P +Y
Sbjct: 398 GRKPLYIALAQRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMPGPPQHMYVGQ--NGA 455
Query: 415 SQVPPRP-GLMYQPL---GLRTGWRANGFV--------PPTRPAFQVSPLPVNPKHNRQN 462
S VP +P G +QP G+R G F+ P T P N + + Q
Sbjct: 456 SMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVPYSLQRQPQTGPRMGFRRGATNVQQHIQQ 515
Query: 463 RGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ M+ N P G YM +S + G VP G +
Sbjct: 516 QQLMHRN--PSPGMRYMNGASNG-----------RNGMDSSVPQG------ILPPIIPLP 556
Query: 523 FNSGGVMARKPDM-----LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE 577
++ + +K + L LA+ SP + ++LGE+LYPLVE+H+P VAK+TGMLLE
Sbjct: 557 IDASSISHQKAPLLPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLE 616
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVLKLS 607
MD +E+L L+ESPE+L KV EA+ VL+LS
Sbjct: 617 MDQAEILHLMESPEALKSKVSEALDVLRLS 646
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 272/626 (43%), Positives = 373/626 (59%), Gaps = 46/626 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL P+VTD +LFDAFS+ + SVRVC+D T RS YGYVNF SP DA RAI+
Sbjct: 41 SLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQE 100
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+ L+GK +R+ +S RDP R+SG N+F+KNL +SID+ L + F FGNIISCKVA
Sbjct: 101 LNYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFGNIISCKVA 160
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQ+ETEESA A+ LNG + DK++YVG F+++ +R +TN
Sbjct: 161 VDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQERDSTGNKTIFTN 220
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL T++ L F +FGKI S ++ +D G +GFGFVNF+N DDA +A+E++N
Sbjct: 221 VYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLN 280
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K + RAQKK+ERE L+ Q+E+ KE K++ SN+YVKN+DD V+DE+LK
Sbjct: 281 GKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKFQSSNLYVKNLDDSVSDEKLKE 340
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F+ GT+TS KVMRD G+++G GFV FS+PEEA+KA++ G M+ KPLYVA+AQRK
Sbjct: 341 LFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAMSEMSGKMIENKPLYVAVAQRK 400
Query: 373 EDRQAHLQLQYAQHM---------AGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGL 423
EDR+A LQ Q++Q + G P Y PP ++S +PG
Sbjct: 401 EDRRARLQAQFSQMRPVAMPPPVGPRMPIYPPGGPGIGQPMFYGQAPPTMISS---QPGF 457
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
YQ L G R G P F +P+ + ++ GR G G QQ
Sbjct: 458 GYQQQ-LVPGMRPGG--APMHNFF----MPMVQQGQQRPGGRHPG------GIQQSQQQQ 504
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSG-----VSLGTFNSGGVMARKPDMLNG 538
Q + +G +Y P GR GSG + + G M + +L+
Sbjct: 505 QVPMMQQQHQMHPRGRMFRY-PQGR------GSGGPPDVPGMLPYEMGSNMPLRDPVLSQ 557
Query: 539 ML---------AAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
+ A +PE Q+ +LGE LYPLVE+ + + AK+TGMLLEMD +E+L LLES
Sbjct: 558 HVPIGALASSLANAAPELQRTLLGENLYPLVEQLEAESAAKVTGMLLEMDQTEVLHLLES 617
Query: 590 PESLAVKVEEAVQVLKLSEAKVSTQE 615
PE+L KV EA+ VL+ A S ++
Sbjct: 618 PEALKAKVAEAMDVLRSVAAGGSAEQ 643
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 23/191 (12%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +VT+ L + FS+ G++ S+ + RD S G+G+VNF +P DA RA++
Sbjct: 40 TSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQ 99
Query: 250 AMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + K V+Y+ R + + N+++KN+D +
Sbjct: 100 ELNYIPLNGKPVRVMYS-------------------HRDPSVRRSGAGNIFIKNLDKSID 140
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L FS G I S KV D G +KG+GFV + + E A KA+ +G +L+ K +YV
Sbjct: 141 HKALHDTFSVFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYV 200
Query: 367 AIAQRKEDRQA 377
R+++R +
Sbjct: 201 GPFLRRQERDS 211
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++LYV +L V+D +L + F+ + ++ S +V +D G S G+V F +P +A +A+
Sbjct: 322 SNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDP-NGMSRGSGFVAFSTPEEATKAMS 380
Query: 72 VKNHTQLHGKMLRISWSCRDPDAR 95
+ + K L ++ + R D R
Sbjct: 381 EMSGKMIENKPLYVAVAQRKEDRR 404
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 268/612 (43%), Positives = 373/612 (60%), Gaps = 34/612 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD++G SRGFGFVNF ++A++A+
Sbjct: 190 FTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVM 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE+
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G +L KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQ--- 426
QRKE+R+A L QY Q ++ + ++ S + Y P V Q PP Y
Sbjct: 369 QRKEERKAILTNQYMQRLSTVRALGGPLLGSFHQPTSYFLPS--VPQ-PPAQAAYYASGL 425
Query: 427 PLGLRTGWRANGFVPPTRP--AFQVSPLPVNPKHNRQ-NRGRMNGNMLPQVGAHYMQQSS 483
P+ W A PP RP A V P ++ + Q + R +P H + ++
Sbjct: 426 PMQPTPRWTA----PPPRPSSASVVRPPAMSRRPPAQVSSVRQASTQVPPPVPHTQRVAN 481
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG------GVMARKPDMLN 537
++ S G P G + S T N G ++ ++P +
Sbjct: 482 IGTQTTGAS------GVGYSTPGGPLLTHRYPS----ATHNHGVQEPAVRILGQEP-LTA 530
Query: 538 GMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL KV
Sbjct: 531 SMLAAAPLHEQKQMIGERLYPLIYNTHTQLAGKITGMLLEIDNSELLLMLESPESLNAKV 590
Query: 598 EEAVQVLKLSEA 609
EEA+ VL+ +A
Sbjct: 591 EEALAVLQAHQA 602
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +I+ Q R + K N+++KN++D
Sbjct: 66 ERALDTMNFEVI------------KGQPIRIMWSQ----RDPGLRKSGVGNIFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ D+ G ++GFGFV F + E A +A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + +R+ L
Sbjct: 169 FVGHFKSRREREVEL 183
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 267/620 (43%), Positives = 376/620 (60%), Gaps = 46/620 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLY GDL P VT+ LFD F ++ SVRVC+D RS Y Y+NF +P+DA RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T L + +RI S RDP R SG N+F+KNL SIDN L E F +FG I+SCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A G+SKG+GFVQFE EESA AAI+ LNG + DK+++VG FI++ +R +P +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL ++ E+ L + F KFG I+S ++ RD++G SR FGFVNF+ + A A+E
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG +G VLY RAQKK+ERE+ LR +FE++R R K +G+N+Y+KN+DD V DE+
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS+ G +TS+KVM + +G+++GFGFV +S+PEEA +A++ +G M+ RKPLY+A+A
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 370 QRKEDRQAHLQLQYAQ-----HMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP-GL 423
QRKEDR+AHLQ ++Q M+G +P +Y S VP +P G
Sbjct: 408 QRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMPGPPQHMYVGQ--NGASMVPSQPIGY 465
Query: 424 MYQPL---GLRTGWRANGFV--------PPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLP 472
+QP G+R G F+ P T P N + + Q + M+ N P
Sbjct: 466 GFQPQFMPGMRPGSGPGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRN--P 523
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARK 532
G YM +S + G VP G + ++ + +K
Sbjct: 524 SPGMRYMNGASNG-----------RNGMDSSVPQG------ILPPIIPLPIDASSISHQK 566
Query: 533 PDM-----LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLL 587
+ L LA+ SP + ++LGE+LYPLVE+H+P VAK+TGMLLEMD +E+L L+
Sbjct: 567 APLLPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLM 626
Query: 588 ESPESLAVKVEEAVQVLKLS 607
ESPE+L KV EA+ VL+LS
Sbjct: 627 ESPEALKSKVSEALDVLRLS 646
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 266/619 (42%), Positives = 372/619 (60%), Gaps = 48/619 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ G S+G GFV FET E+A+ AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD+ G SRGFGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVM 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE+ +++R +Y+G N+YVKN+DD + DE+
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGY--PSL--------YYTTPPGIV 414
QRKE+R+A L QY Q ++ + ++ P+ Y P++ YY + P
Sbjct: 369 QRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQAAYYASSPS-- 426
Query: 415 SQVPPRPGLMYQPLGLRTGWRANGFVPPT---RPAFQVSPLPVNPKHNRQNRGRMNGNML 471
V P P QP + + A+ PP RP QV N R +
Sbjct: 427 --VQPAPRWTAQPPRVSS---ASMVRPPAMLRRPPAQV------------NSVRQASTQV 469
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGV-SLGTFNSGGVMA 530
P G H + ++ ++ S G P G + S + G S +
Sbjct: 470 PPPGPHTQRVANIGTQTTGAS------GVGYSTPTGPVLTHKYSSAAHNPGVRESAVCIP 523
Query: 531 RKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
+ + MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESP
Sbjct: 524 GQEPLTASMLAAAPLHEQKQMIGERLYPLIYDTHTQLAGKITGMLLEIDNSELLLMLESP 583
Query: 591 ESLAVKVEEAVQVLKLSEA 609
ESL KVEEA+ VL+ +A
Sbjct: 584 ESLNAKVEEALAVLQAHQA 602
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +I+ Q R + K N+++KN++D
Sbjct: 66 ERALDTMNFEVI------------KGQPVRIMWSQ----RDPGLRKSGVGNIFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ D+ G ++GFGFV F + E A +A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + +R+A L
Sbjct: 169 FVGHFKSRREREAEL 183
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 266/620 (42%), Positives = 374/620 (60%), Gaps = 29/620 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS S+ S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A + G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL +DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA+RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ + VP P
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF------LPAVPQPPA------ 416
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
+ + G V PT+PA + + P P R + P + Q S+Q +
Sbjct: 417 --QAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRPPVMPRCPPAHISSVRQASTQVPRT 474
Query: 489 SKDSSNQQKGGQSKYVPN-------GRIRELNKGSGVSLGTFNSGGVMARKPD---MLNG 538
+ G P+ GR K S + T P +
Sbjct: 475 VPHTQRVANIGTQTTGPSGVGCCTPGRPLLPYKCSSAAHSTDQVQEPAVHIPGHEPLTAS 534
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K++
Sbjct: 535 MLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKID 594
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV VL+ +A + +H
Sbjct: 595 EAVAVLQAHQAVEQPKAFMH 614
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 155/288 (53%), Gaps = 16/288 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G+I+S +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I I S R + N+F+KNL+ + + L + FS FG I
Sbjct: 70 DTMNFEMLKGQPIR----IMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A D++G SRGFGFV+F+ + A++A+ MNG ++ + ++ + + ER L
Sbjct: 126 LSCKVACDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAEL- 183
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
R L++ +N+YVKN+ DV ++ L+ FSQ G + S KVMRD G ++ FG
Sbjct: 184 -------GARALEF--TNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F EEA KAV +G + + LY + AQ++ +RQ L+ ++ Q
Sbjct: 235 FVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQ 282
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G+I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 268/629 (42%), Positives = 376/629 (59%), Gaps = 63/629 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIRGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDNHG-SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSRREREAELGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD++G SRGFGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVT 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE+
Sbjct: 250 DMNGKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRREFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGY--PSL--------YYTT----- 409
QRKE+R+A L QY Q ++ + ++ P+ Y P++ YY +
Sbjct: 369 QRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQTAYYASSSPMQ 428
Query: 410 PPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPT---RPAFQVSPLPVNPKHNRQNRGRM 466
P + PPRP Y P A+ PP RP QVS + R
Sbjct: 429 PAPRWTAQPPRPSSTYPPA-------ASMIRPPAMLRRPPAQVSGV------------RQ 469
Query: 467 NGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
+P H + ++ ++ S G P+G + S T+N G
Sbjct: 470 ASTQVPPTVPHTQRVANIGTQTTGAS------GAGYPAPSGPLLTHKYSS----ATYNHG 519
Query: 527 ------GVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
+ ++P + MLAA +QKQ++GERLYPL+ L KITGMLLE+DN
Sbjct: 520 VQEPAVRIPGQEP-LTASMLAAAPLHEQKQMIGERLYPLIYDAHTQLAGKITGMLLEIDN 578
Query: 581 SELLLLLESPESLAVKVEEAVQVLKLSEA 609
SELLL+LESPESL KVEEA+ VL+ +A
Sbjct: 579 SELLLMLESPESLNAKVEEALAVLQAHQA 607
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI R Q +R + + R + K N+++KN++D
Sbjct: 66 ERALDTMNFEVI---------------RGQPIRIMWSQ-RDPGLRKSGVGNIFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ D G ++GFGFV F + E A +A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDNHG-SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + +R+A L
Sbjct: 169 FVGHFKSRREREAEL 183
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 278/644 (43%), Positives = 374/644 (58%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+ VC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPALRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + Q GG V R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYKY 525
Query: 527 GVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEKHKPD 566
R P L AP P ++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 266/619 (42%), Positives = 369/619 (59%), Gaps = 48/619 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +V D +L+D FS+ ++ SVRVC+D +T RS YGYVN+ +P DA RA++V
Sbjct: 31 SLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDV 90
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T L+GK +RI +S RDP RKSG N+F+KNL + ID+ L + F FGNI+SCKVA
Sbjct: 91 LNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVA 150
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G SKGHGFVQF++EE+A AI+ LNG + DK+++VG F++K +R K+ N
Sbjct: 151 TDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNN 210
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN+ +TEE L F +FG I S+++ RD +G S+ FGFVNF+N DDA ++EA+N
Sbjct: 211 VFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALN 270
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y +AQKK+ERE L+ +FE+ KE + K++G+N+Y+KN+DD + D++LK
Sbjct: 271 GQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKE 330
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F+Q GTITS KVMRD G+++G GFV FSSPEEAS+A+ + M+ KPLYVA+AQRK
Sbjct: 331 LFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQRK 390
Query: 373 EDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRT 432
EDR+A LQ Q++Q S YP + PG+ Q + Y
Sbjct: 391 EDRRARLQAQFSQMRPVPMPPSVVPRLPMYPP----SGPGLGQQ------MFYGQAPPAI 440
Query: 433 GWRANGF------VPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSA 486
GF VP RPA P+P Q + + GA MQQ+ Q
Sbjct: 441 IPPQPGFGYQQQLVPGMRPA--GPPMPNFFVPIVQQGQQGQRPGGRRAGAVPMQQTQQQV 498
Query: 487 ASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVS-LGTFNSGGVMARKPDMLNGM------ 539
+ + +P GR+ G G+S + G M P + GM
Sbjct: 499 PLMQ----------QQMLPRGRVFRYPPGRGLSDVPMPGVAGGMVSVPYDMGGMPLHDAA 548
Query: 540 -------------LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLL 586
LA P +Q+ +LGE LYPLVE+ +P++ AK+TGMLLEMD +E+L L
Sbjct: 549 ISQSIPVGALATALANAPPAEQRTMLGENLYPLVEQLEPEMAAKVTGMLLEMDQTEVLHL 608
Query: 587 LESPESLAVKVEEAVQVLK 605
LESP++L KV EA++VL+
Sbjct: 609 LESPDALKAKVAEAMEVLR 627
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 23/193 (11%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +L+ +V + L + FS+ G + S+ + RD S G+G+VN+ NP DA RAL+
Sbjct: 30 TSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 89
Query: 250 AMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + + K ++Y+ R I K N+++KN+D +
Sbjct: 90 VLNFTPLNGKPIRIMYS-------------------HRDPSIRKSGTGNIFIKNLDKGID 130
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L FS G I S KV D G++KG GFV F S E A KA++ +G +L+ K ++V
Sbjct: 131 HKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFV 190
Query: 367 AIAQRKEDRQAHL 379
RK++R++ +
Sbjct: 191 GPFVRKQERESTI 203
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 270/618 (43%), Positives = 381/618 (61%), Gaps = 30/618 (4%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +V + +L+D FS+ + SVRVC+D T S YGYVNF +P DA A++
Sbjct: 46 SLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKA 105
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T L+GK +RI +S RDP RKSG N+F+KNL ++DN L E F FG ++SCKVA
Sbjct: 106 LNFTPLNGKPIRIMFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVLSCKVA 165
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
+G+SKG+GFVQFE EESA AI L+G + DK++YVG F+++ +R + + K+TN
Sbjct: 166 VDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTRTNGSPKFTN 225
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL +T E L + F +G I S L+ +D+ G SRGFGFVNF +PD A A+E +N
Sbjct: 226 VYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLN 285
Query: 253 GSVI-GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G+ K Y RAQ+K+ERE L+ +FE++R R + K +N+Y+KN+DD++ D +LK
Sbjct: 286 GTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNINDVKLK 345
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS+ G+ITS KVM D +G++KG GFV FS+PEEAS+A+ +G M+ RKPLYVAIAQR
Sbjct: 346 ELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYVAIAQR 405
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQV----PPRPGLMYQP 427
KE+R+A LQ +A + G+ A +PSG P Y P + Q PG+M P
Sbjct: 406 KEERKARLQAHFA--LVRAPGALAP-LPSGIPG-YNAGAPRLAPQQLYFGQGTPGMM-PP 460
Query: 428 LGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAA 487
G++ + RPA V P + P H Q +G+ M + G + Q Q
Sbjct: 461 QHAGYGFQQQ-ILTSMRPA--VGPNFIIPYH-LQRQGQPGQRMGMRRGGNPQQMQQQQQL 516
Query: 488 SSKDSS-------NQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM----L 536
++++ N + G S VP G G V L SG + +P + L
Sbjct: 517 LHRNNNQGLRYVGNARNSGNSSVVPQGL-----AGPMVPLPFEVSGASVDVQPPVTISTL 571
Query: 537 NGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
LA+ +PE++ ++LG+ LYPLVE+ +PD VAK+TGMLLEMD +E+L L+ESP+SL K
Sbjct: 572 ASALASATPEKRTEMLGDHLYPLVERLQPDHVAKVTGMLLEMDQTEVLHLIESPDSLKKK 631
Query: 597 VEEAVQVLKLSEAKVSTQ 614
V EA+QVL+ + A V Q
Sbjct: 632 VAEAMQVLREATANVGDQ 649
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEAS 348
++ ++YV +++ +V +E+L FSQ + S +V RD+ K + G+G+V FS+P++A+
Sbjct: 41 QFANLSLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAA 100
Query: 349 KAVNTFHGYMLHRKPLYVAIAQR 371
A+ + L+ KP+ + + R
Sbjct: 101 NAMKALNFTPLNGKPIRIMFSHR 123
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LY+ +L ++ D +L + FSEF S+ S +V D G S G+V F +P +A RA++
Sbjct: 328 ANLYLKNLDDNINDVKLKELFSEFGSITSCKVMLDH-QGVSKGSGFVAFSTPEEASRALK 386
Query: 72 VKNHTQLHGKMLRISWSCR 90
N + K L ++ + R
Sbjct: 387 EMNGKMIGRKPLYVAIAQR 405
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 267/620 (43%), Positives = 378/620 (60%), Gaps = 26/620 (4%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDLHP+VT+ +LF+ F+ + S+RVC+D+ T RS Y YVNF + DA RA++
Sbjct: 46 SLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAERALDT 105
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N++ + GK RI WS RDP RKSG+ N+F+KNL ++IDN L + F FGNI+SCKV
Sbjct: 106 LNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFGNILSCKVV 165
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV-LPSPAAKYT 191
T E+G SKG+GFV +ET+E+A AI +NG + K+++VG F+ + +RV L K+T
Sbjct: 166 TDENG-SKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPRKERVELGEGVTKFT 224
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEA 250
N+F+KNL D T+ L + FSKFGKI S++I + ++ S+GFGFV ++ +DA+ A+ A
Sbjct: 225 NVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNA 284
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+NG+ + K L+ ARAQKKAERE L+ +++ R ERI KY+G N+YVKN+DD + ++++
Sbjct: 285 LNGTELAGKTLFVARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAIDEDKI 344
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR--KPLYVAI 368
+ F+ GTITS K+MRDEKG ++GFGF+CFSS EEA+KAV +G + KPLYVA+
Sbjct: 345 RTEFAPFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGFPKPLYVAL 404
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY-QP 427
AQR EDR+A L +AQ + G A + +G P Y P + VP G++Y Q
Sbjct: 405 AQRAEDRRAQLAAHFAQQRGNMGGRMAGGVIAGMPPQYMAGPQMFYAGVPQNRGMVYPQN 464
Query: 428 LGLRTGWRAN---GFVPPTRPA---FQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYM-- 479
+ R W AN G RP F P V + +RG GN P+ GA M
Sbjct: 465 VMRRGAWPANVPVGVAAGARPGFGPFMAVPQGVPRQAGNNSRG---GNRAPRAGAPGMIN 521
Query: 480 -----QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSL-GTFNSGGVMARKP 533
QQ Q + + + G + P + + G+ ++ T G A P
Sbjct: 522 QQFPQQQQPQQPQQPQQQQSLRAGQAASGAPRQQGAQQGAGARQAIPKTAGRQGASATAP 581
Query: 534 DMLNGMLAAPSP---EQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
+ LA S QK++LGE L+PL+ + DL KITGMLLEMDN+ELL L+ P
Sbjct: 582 APSDERLANLSQFDLATQKRVLGETLFPLIAATQADLAGKITGMLLEMDNTELLHLISVP 641
Query: 591 ESLAVKVEEAVQVLKLSEAK 610
++LA KV+EAV VL+ A+
Sbjct: 642 DALAEKVQEAVTVLQTHGAQ 661
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 18/191 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L +VTE L E F+ G + S+ + RD S G+ +VNF DA
Sbjct: 40 PSFPSGSLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDA 99
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ +N S+I K +I+ Q R + K NV++KN+D
Sbjct: 100 ERALDTLNYSLIRGKPC------------RIMWSQ----RDPAVRKSGLGNVFIKNLDKT 143
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G +KG+GFV + + E A A+ +G +++ K +
Sbjct: 144 IDNKALLDTFSAFGNILSCKVVTDENG-SKGYGFVHYETQEAAETAIAKVNGMVINGKQV 202
Query: 365 YVAIAQRKEDR 375
+V I +++R
Sbjct: 203 FVGIFVPRKER 213
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 270/627 (43%), Positives = 380/627 (60%), Gaps = 49/627 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDL P V + +L D F++ + +VRVC+D T RS Y YVNF +P DA RA++
Sbjct: 58 SSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRD-LTRRSLGYAYVNFANPEDASRAMD 116
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + + +RI S RDP R SG N+F+KNL SIDN L E F FG I+SCKV
Sbjct: 117 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCKV 176
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA--K 189
A G+SKG+GFVQFE EE+A AAI+ LNG + DK+++VG F+++ DR A +
Sbjct: 177 AMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVPR 236
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL ++T++ L + F K+G I+S ++ +D++G SR FGFVNF++P+ A A+E
Sbjct: 237 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVE 296
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG +G VLY RAQKK+ERE+ LR +FE++R R K +GSN+Y+KN+DD V DE+
Sbjct: 297 KMNGISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 356
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS+ G +TS KVM + +G+++GFGFV +SSPEEAS+A++ +G M+ RKPLYVA A
Sbjct: 357 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYVAFA 416
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY---- 425
QRKE+R+AHLQ + H+ + + IPS P ++ P G +S P MY
Sbjct: 417 QRKEERRAHLQTLFT-HIR--SPGTMSPIPSPMPGFHHHPPGGPMSG--PHHPTMYIGQN 471
Query: 426 -------QPLGLRTGWRANGFVPPTR----PAFQVSPLPVNPKHNRQN---------RGR 465
QP+G G++ F+P R PA + P P+ RQ RG
Sbjct: 472 GQGLVPPQPMGY--GYQVQ-FMPGVRPGAGPANYMMPFPL----QRQTQPGPRVGFRRGA 524
Query: 466 MNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNS 525
N Q Q +S + N++ G ++ P G I S +S ++
Sbjct: 525 NNMQQHFQQQQILQQNASPGMRYMGGAGNRRNGMEAS-APQGIIPLPLNASAIS----HN 579
Query: 526 GGVMARKPDMLN-----GMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
KP +L LA PE+ Q+LGE LYPLV + +P+ AK+TGMLLEMD
Sbjct: 580 APQHPHKPPLLTISKLASDLALAPPEKHPQMLGENLYPLVAQQEPEYAAKVTGMLLEMDQ 639
Query: 581 SELLLLLESPESLAVKVEEAVQVLKLS 607
+E+L LLESPE+L KV EA+ VL+LS
Sbjct: 640 AEILHLLESPEALKAKVSEALDVLRLS 666
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 49/81 (60%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+ S++YV ++D V + +L F+Q + + +V RD + G+ +V F++PE+AS+A
Sbjct: 55 HPNSSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRA 114
Query: 351 VNTFHGYMLHRKPLYVAIAQR 371
+++ + + +P+ + ++ R
Sbjct: 115 MDSLNYAPIRDRPIRIMLSNR 135
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 284/651 (43%), Positives = 389/651 (59%), Gaps = 66/651 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL ++TD +L+D F + + SVRVC+D +T RS YGYVN+ +P DA RA++
Sbjct: 18 ASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 77
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+ N T L+GK +RI +S RDP RKSG AN+F+KNL +SIDN L + F FGNI+SCK+
Sbjct: 78 LLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKI 137
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT G+SKG+GFVQF+ EESA AI+ LNG + DK++YVG+F++K +R K+
Sbjct: 138 ATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFN 197
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL TEE L F +FG I S+++ RD +G S+ FGFVNF+N DDA A+EA+
Sbjct: 198 NVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEAL 257
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG K Y +AQKK ERE L+ +FE+ KE + K++G N+Y+KN+DD + D++LK
Sbjct: 258 NGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLK 317
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS+ GTITS KVMRD GI++G GFV FS+ EEAS+A+ +G M+ KPLYVA+AQR
Sbjct: 318 ELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQR 377
Query: 372 KEDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPG 422
KE+R+A LQ Q++Q MA + P G P L Y PP I +PP+ G
Sbjct: 378 KEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAI---IPPQAG 434
Query: 423 LMYQPL---GLRTGW--RANGFVPPTRPAFQVSPL-------PVNPKHNRQNRGRMNGNM 470
YQ G+R G N FVP + Q PV + N+Q M M
Sbjct: 435 FGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGAGPV--QQNQQPVPLMQQQM 492
Query: 471 LPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT----FNSG 526
LP +GG+ P GR GV+ G ++ G
Sbjct: 493 LP------------------------RGGRVYRYPPGRNMPDVPMPGVAGGMLSIPYDMG 528
Query: 527 GVMARKPDMLNGM--------LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEM 578
GV R + M LA +P+QQ+ +LGE LYPLV++ + ++ AK+TGMLLEM
Sbjct: 529 GVPLRDAAIGQPMPISALASALANATPDQQRTMLGESLYPLVDQLEHEMAAKVTGMLLEM 588
Query: 579 DNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
D +E+L LLESPE+L KV EA+ VL+ V+ Q+A P A +++N
Sbjct: 589 DQTEVLHLLESPEALKSKVAEAMDVLR----NVAQQQANSPTEQLASLSLN 635
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 263/614 (42%), Positives = 377/614 (61%), Gaps = 18/614 (2%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY+GDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FG+I+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA--AK 189
E G S+G+GFV FET+E+AN AI+ +NG + D++++VG F + +R L A +
Sbjct: 131 VCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E FS FG S+ + D +G SRGFGFVN+ N ++A++A+
Sbjct: 190 FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVT 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +++Y RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + D+
Sbjct: 250 EMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITS KVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGTITSTKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYY--TTP-PGIVSQVPPRPGLMY 425
QRKE+R+A L QY Q +A + ++ S P+ Y+ T P P + P P
Sbjct: 369 QRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPNP---V 425
Query: 426 QPLGLRTGWRANGFVPPTR--PAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQS- 482
P+ W ++ PP PA + +P H+ + + +P+V + +
Sbjct: 426 APVRPAPQWASHQSRPPQYQPPAPLMRAVPPRRMHSNISTMKQASTQVPRVPLQSQRVAN 485
Query: 483 --SQSAASSKDSSNQQKGGQSKYVPNGRIRELNK-GSGVSLGTFNSGGVMARKPDMLNGM 539
+Q+A + + Y + +R + GS L V+ + + L
Sbjct: 486 IGTQTAGARAQVNASIMRAMPHYKYSCGVRNVQPIGSSAHLQQVLEPAVLMQGQEPLTAS 545
Query: 540 LAAPSP-EQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
L A +P ++QKQILGER+YPL+ + P L KITGMLLE+DNSELL +LESPESL KVE
Sbjct: 546 LLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVE 605
Query: 599 EAVQVLKLSEAKVS 612
EAV VL+ +AK S
Sbjct: 606 EAVAVLQAHQAKES 619
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEAS 348
+Y +++Y+ ++ DVT+ L FS G I S +V RD + G+ ++ F P +A
Sbjct: 7 EYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAE 66
Query: 349 KAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ +P+ + +QR
Sbjct: 67 RALDTMNFEVIKGRPIRIMWSQR 89
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 269/620 (43%), Positives = 374/620 (60%), Gaps = 29/620 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L E FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ +P P QP
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF---------LPAMP----QPP 415
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
+ + G V PT+PA + + P P R + P + Q S+Q +
Sbjct: 416 A-QAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRPPVVPRRPPAHISSVRQASTQVPRT 474
Query: 489 SKDSSNQQKGGQSKYVPN-------GRIRELNKGSGVSLGTFNSGGVMARKPD---MLNG 538
+ G P+ GR K S + T+ P +
Sbjct: 475 VPHTQRVANIGTQTTGPSGVGCCTPGRPLLPCKCSSAAHSTYRVQEPAVHIPGQEPLTAS 534
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K++
Sbjct: 535 MLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKID 594
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV VL+ +A + +H
Sbjct: 595 EAVAVLQAHQAMEQPKAYMH 614
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 267/620 (43%), Positives = 373/620 (60%), Gaps = 29/620 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ + VP P
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF------LPAVPQPPA------ 416
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
+ + G V PT+PA + + P P R + P + Q S+Q +
Sbjct: 417 --QAAYYGCGPVTPTQPAPRWTSQPPRPSCASVVRPPVVPRRPPAHISSVRQASTQVPHT 474
Query: 489 SKDSSNQQKGGQSKYVPN-------GRIRELNKGSGVSLGTFNSGGVMARKPD---MLNG 538
+ G P+ GR K S + T+ P +
Sbjct: 475 VPHTQRVANIGTQTTGPSGVGCCTPGRPLLPYKCSSAAHSTYRVQEPAVHIPGQEPLTAS 534
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K++
Sbjct: 535 MLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKID 594
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV VL+ +A + +H
Sbjct: 595 EAVAVLQAHQAMEQPKAYVH 614
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 269/625 (43%), Positives = 373/625 (59%), Gaps = 44/625 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD+T+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F K+GK S+ + D G SRGFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG+ + K ++ RAQKK ER+ L+ +FE ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 DMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM +E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI------PSGY--PSL--------YYTTPPGI 413
QRKE+R+AHL QY Q +AG+ AN I SGY P++ YY P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRAMPANTIINQFQPTSGYFMPAVPQAQNRTTYYA--PNQ 426
Query: 414 VSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ 473
++Q+ P P Q N P P+ N + + + P+
Sbjct: 427 LAQMRPNPRWQQQGGRGGFQGMPNTLRQP------------GPRGNMRQMTPNSSSQGPR 474
Query: 474 VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP 533
A M + K PN ++ V V +
Sbjct: 475 GSAQTMAPRPSMGVPGPRNVTPYKYATGVRNPNPQV--------VQPIALQQPAVHVQGQ 526
Query: 534 DMLNGMLAAPSPEQ-QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPES 592
+ L + A +P Q QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LES ES
Sbjct: 527 EPLTPSMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHES 586
Query: 593 LAVKVEEAVQVLKLSEAKV-STQEA 616
L KVEEAV VL+ +AK +TQ+A
Sbjct: 587 LRSKVEEAVAVLQAHQAKKDATQKA 611
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ D+T+ L FS G + S +V RD I + G+ +V FS P +A
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFSQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVVKGKPIRIMWSQR 89
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 280/652 (42%), Positives = 383/652 (58%), Gaps = 69/652 (10%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T S+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A+ N + GK LRI WS RDP RK GV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET E+A AIE +NG + D++++VG+F + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLWKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGY----------PSLYYTTP 410
KPLYVA+AQRKE+RQA+L +Y Q A + + PSGY + YY P
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRTASVRAVPNQRAPPSGYFMAAVPQTQNHAAYY--P 418
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-- 467
P V+Q+ P P W A G RP FQ P + P R M
Sbjct: 419 PSQVAQLRPSP-----------RWTAQG----ARPHPFQNKPSAIRPGAPRVPFSTMRPA 463
Query: 468 GNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQS------------KYVPNGRI------ 509
+ +P+V S+Q A ++S Q G + + VP +
Sbjct: 464 SSQVPRV------MSTQRVA---NTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRN 514
Query: 510 --RELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPD 566
+ LN V T V + + L LA+ P++QKQ+LGERL+PL++ P
Sbjct: 515 PQQHLNAQPQV---TMQQPAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPT 571
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
L KITGMLLE+DNSELL +LESPESL K +EAV VL+ EAK +T++A++
Sbjct: 572 LAGKITGMLLEIDNSELLYMLESPESLRSKADEAVAVLQAHEAKEATEKAVN 623
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 262/614 (42%), Positives = 367/614 (59%), Gaps = 37/614 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ F + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELRARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL D+ E+ L + FS+FGK+ S+ + +D NG SRGFGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVM 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + + LY RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE+
Sbjct: 250 DMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSG-YPSLYYT----TPP--------GIVSQ 416
QRKE+R+A L QY Q ++ + ++ S P+ Y+ PP G V+
Sbjct: 369 QRKEERRAILSNQYMQRLSTMRALGVPLLGSSQQPTSYFLPAMPQPPARAAYYGSGSVAT 428
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
+ P P QP P RP Q+S + R +P
Sbjct: 429 IQPAPRWAAQPPRPSCASMVRPPATPRRPLAQLSTV------------RQASTQVPHPVP 476
Query: 477 HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNS-GGVMARKPDM 535
H +Q A+ + G + +G++ + S + M R+ +
Sbjct: 477 H-----TQRVANIGTQTTGPGGAEG--CTSGQLLLPYRHSSAAHNVHRVLESPMHRQEPL 529
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
MLAA P +QKQ++GERLYPL+ P L KITGMLLE+DNSELLL+LESPESL
Sbjct: 530 TASMLAAALPHEQKQMIGERLYPLIYGVYPHLAGKITGMLLEIDNSELLLMLESPESLQA 589
Query: 596 KVEEAVQVLKLSEA 609
K+EEAV VL+ +A
Sbjct: 590 KIEEAVAVLQAHQA 603
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 18/196 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L +DVTE L EKF G I S+ + RD S + ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +I+ Q R + K N+++KN++D
Sbjct: 66 ERALDTMNFEVI------------KGQPIRIMWSQ----RDPGLRKSGVGNIFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G ++GFGFV F + E A +A++T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHLQ 380
+V + + +R+A L+
Sbjct: 169 FVGHFKSRREREAELR 184
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 269/625 (43%), Positives = 361/625 (57%), Gaps = 60/625 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A E G SKG+GFV FETEE+AN +I+ +NG + K++ +T
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKL-------------------FT 171
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KN D+T++ L E F K+G I S + ++G SRGFGFV F++PD A +A+ +
Sbjct: 172 NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLEL 231
Query: 252 NG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
NG V K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE L
Sbjct: 232 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERL 291
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ GTITSAKVM +E G +KGFGFVCFS+PEEA+KAV +G ++ KPLYVA+AQ
Sbjct: 292 RKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQ 350
Query: 371 RKEDRQAHLQLQYAQHMAGIE----------GSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
RKEDR+AHL QY Q +A + G + N P P ++Q+
Sbjct: 351 RKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTT 410
Query: 421 PGLMYQPLGLR----TG----------WRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRM 466
P QP +R TG +RA P +P S L P +Q G
Sbjct: 411 PRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITGQQTVGGA 470
Query: 467 NGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
N QS A + S Q + KY N +R + + T
Sbjct: 471 N------------MQSRSMAGPAVGVSAQSRPSNYKYTSN--MRNPPQAMAIPTPTPVQQ 516
Query: 527 GVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
V + + L MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL
Sbjct: 517 AVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLH 576
Query: 586 LLESPESLAVKVEEAVQVLKLSEAK 610
+LE ESL KVEEAV VL+ +AK
Sbjct: 577 MLEHNESLKAKVEEAVAVLQAHQAK 601
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 17/185 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L SD+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R + K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----------------RDPSLRKSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++ ++ + FS G I S KV +DE G++KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKK 168
Query: 364 LYVAI 368
L+ +
Sbjct: 169 LFTNV 173
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 268/620 (43%), Positives = 373/620 (60%), Gaps = 29/620 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ +P P QP
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF---------LPAMP----QPP 415
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
+ + G V PT+PA + + P P R P + Q S+Q +
Sbjct: 416 A-QAAYYGCGPVTPTQPAPRWTSQPPRPSCASVVRPPAVPRRPPAHISSVRQASTQVPRT 474
Query: 489 SKDSSNQQKGGQSKYVPN-------GRIRELNKGSGVSLGTFNSGGVMARKPD---MLNG 538
+ G P+ GR K S + T+ P +
Sbjct: 475 VPHTQRVANIGTQTTGPSGVGCCTPGRPLLPCKCSSAAHSTYRVQEPAVHIPGQEPLTAS 534
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K++
Sbjct: 535 MLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKID 594
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV VL+ +A + +H
Sbjct: 595 EAVAVLQAHQAMEQPKAYMH 614
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 269/624 (43%), Positives = 375/624 (60%), Gaps = 57/624 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E L + FS+FGKI S+ + RD++G SRGFGFVNF+ +DA++A+
Sbjct: 190 FTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVT 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE+
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F+ G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFAPYGMITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGY----------PSLYYTTPPGIV 414
QRKE+R+A L QY Q ++ + + ++ P+ Y S YY + P +
Sbjct: 369 QRKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTSYFLPAVPQPPAQSPYYASGPPV- 427
Query: 415 SQVPPRPGLMYQPLGLRTGWRANGFVPPTRP--AFQVSPLPVNPKHNRQNRGRMNGNMLP 472
Q PPR W A P RP A V P V+ R + +
Sbjct: 428 -QPPPR-------------WTAQ----PPRPSCASVVRPAAVS------RRPSVPISSSR 463
Query: 473 QVGAHYMQQSSQS-AASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNS------ 525
QV H + Q+ ++ + G P+G + S T NS
Sbjct: 464 QVSIHVPRPVPQTQGVANIGTQTTGPGVMGCATPSGPLLTHKCCS----ATHNSPRVQEP 519
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
G + R+ + +LAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL
Sbjct: 520 GVRVPRQEPLTASVLAAAPLHEQKQMIGERLYPLIYNMHTQLAGKITGMLLEIDNSELLL 579
Query: 586 LLESPESLAVKVEEAVQVLKLSEA 609
+LESPESL+ KVEEA+ VL+ +A
Sbjct: 580 MLESPESLSAKVEEALAVLQAHQA 603
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +I+ Q R + K NV++KN++D
Sbjct: 66 ERALDTMNFEVI------------KGQPIRIMWSQ----RDPGLRKSGVGNVFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ D+ G ++GFGFV F + E A A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + +R+A L
Sbjct: 169 FVGHFKSRREREAEL 183
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 268/620 (43%), Positives = 374/620 (60%), Gaps = 29/620 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ +P P QP
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF---------LPAMP----QPP 415
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
+ + G V PT+PA + + P P R + P + Q S+Q +
Sbjct: 416 A-QAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRPPVVPRRPPAHISSVRQASTQVPRT 474
Query: 489 SKDSSNQQKGGQSKYVPN-------GRIRELNKGSGVSLGTFNSGGVMARKPD---MLNG 538
+ G P+ GR K S + T+ P +
Sbjct: 475 VPHTQRVANIGTQTTGPSGVGCCTPGRPLLPCKCSSAAHSTYRVQEPAVHIPGQEPLTAS 534
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K++
Sbjct: 535 MLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKID 594
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV VL+ +A + +H
Sbjct: 595 EAVAVLQAHQAMEQPKAYMH 614
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 270/620 (43%), Positives = 369/620 (59%), Gaps = 46/620 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL V D +LFD F++ + SVRVC+D T RS Y YVN+ SP DA RA+E+
Sbjct: 41 SLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEM 100
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++GK +RI +S RDP RKSG AN+F+KNL +SIDN L + F FGNI+SCKVA
Sbjct: 101 LNFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVA 160
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQ+E +E+A AAI+ LNG + DK++YVG FI+K +R K+ N
Sbjct: 161 TDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQVKFNN 220
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL + TE+ L E F KFG I S ++ R+ +G S+ FGFVNF++PDDA +A++ +N
Sbjct: 221 VYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELN 280
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y RAQKK+ERE L+ +FE+ +E KY+ +N+Y+KN+DD V D++L+
Sbjct: 281 GKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRE 340
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F++ GTITS KVMRD G+++G GFV F S E+AS+A+ + M+ KPLYVA+AQRK
Sbjct: 341 LFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQRK 400
Query: 373 EDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPS----LYYTTPPGIVSQVPPRPGLM 424
EDR+A LQ Q++Q +A G + P G P L+Y PP P G
Sbjct: 401 EDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINTQPGFGFQ 460
Query: 425 YQPL--GLRTGWRANGFVPP-TRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQ 481
QPL G+R G G +P P Q P P R GA MQQ
Sbjct: 461 -QPLMPGMRPGA---GPMPNFIMPMVQQGQQPQRPAGRR-------------AGAGGMQQ 503
Query: 482 SSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLA 541
+ +GG+ P GR GV G S M P M + +
Sbjct: 504 PMPMGQQQMMA----RGGRGYRYPTGRGMPDPAMHGVGGGVMPSPYEMGGMP-MRDAAAS 558
Query: 542 AP-------------SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLE 588
P +P+QQ+ +LGE LYPLV++ + + AK+TGMLLEMD +E+L LLE
Sbjct: 559 QPVPIGALATALANAAPDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLE 618
Query: 589 SPESLAVKVEEAVQVLKLSE 608
SPE+L KV EA++VL+ ++
Sbjct: 619 SPEALKAKVAEAMEVLRTAQ 638
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 262/616 (42%), Positives = 369/616 (59%), Gaps = 40/616 (6%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL V D +LFD F++ + SVRVC+D T+ +S Y YVN+ +P DA RA+E+
Sbjct: 33 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 92
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++G+ +RI +S RDP RKSG AN+F+KNL +SIDN L + F FGNI+SCKVA
Sbjct: 93 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVA 152
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQ+E +E+A+AAIE LNG + DK++YVG F++K +R K+ N
Sbjct: 153 TDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGNVKFNN 212
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL TE+ L E F KFG I S+++ RD +G S+ FGFVNF++PD+A A++ +N
Sbjct: 213 VYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 272
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y RAQKK+ERE L+ +FE+ +E KY+ +N+Y+KN+DD V DE+L+
Sbjct: 273 GKKFSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRE 332
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F++ GTITS KVMRD G ++G GFV F S ++AS+A+ + M+ KPLYVA+AQRK
Sbjct: 333 LFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRK 392
Query: 373 EDRQAHLQLQYAQH----MAGIEGSSANVIPSGYP---SLYYTTPPGIVSQVPPRPGLMY 425
EDR+A LQ Q++Q MA G ++P G P ++Y PP ++ P+PG +
Sbjct: 393 EDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPVGQQMFYGQPPAFIN---PQPGFGF 449
Query: 426 QPLGLRTGWRANGFVPPTRPAFQVSP---LPVNPKHNRQNR--GRMNGNMLPQVGAHYMQ 480
Q F+P RP P +P+ + + R GR G Q Q
Sbjct: 450 Q----------QPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPAGRRAGAGGMQQSMQMGQ 499
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP------- 533
Q + Q G +G GV + GG+ R
Sbjct: 500 QQMLGRGGGRGYRYQTGRGMPDPAMHGV-------GGVMTSPYEMGGMPMRDAGESQPVP 552
Query: 534 -DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPES 592
L LA PE Q+ +LGE LYPLV++ + D AK+TGMLLEMD +E+L LLESP++
Sbjct: 553 IGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDA 612
Query: 593 LAVKVEEAVQVLKLSE 608
L KV EA++VL+ ++
Sbjct: 613 LKAKVAEAMEVLRSAQ 628
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 280/652 (42%), Positives = 382/652 (58%), Gaps = 69/652 (10%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T S+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A+ N + GK LRI WS RDP RK GV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET E+A AIE +NG + D++++VG+F + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLWKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGY----------PSLYYTTP 410
KPLYVA+AQRKE+RQA+L +Y Q A + + PSGY + YY P
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRTASVRAVPNQRAPPSGYFMAAVPQTQNHAAYY--P 418
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-- 467
P V+Q+ P P W A G RP FQ P + P R M
Sbjct: 419 PSQVAQLRPSP-----------RWTAQG----ARPHPFQNKPSAIRPGAPRVPFSTMRPA 463
Query: 468 GNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQS------------KYVPNGRI------ 509
+ +P+V S+Q A ++S Q G + + VP +
Sbjct: 464 SSQVPRV------MSTQRVA---NTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRN 514
Query: 510 --RELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPD 566
+ LN V T V + + L LA+ P++QKQ+LGERL+PL++ P
Sbjct: 515 PQQHLNAQPQV---TMQQPAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPT 571
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
L KITGMLLE+DNSELL +LESPESL K EAV VL+ EAK +T++A++
Sbjct: 572 LAGKITGMLLEIDNSELLYMLESPESLRSKAGEAVAVLQAHEAKEATEKAVN 623
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 274/661 (41%), Positives = 385/661 (58%), Gaps = 77/661 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRST------------------ 53
ASLYVGDLHPDVT+ L++ FS + S+RVC+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDXXXXXXXRWRRSHHPELLPAPQPGE 70
Query: 54 ----CYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIE 109
C + + P + RA++ N + GK +RI WS RDP RKSGV N+F+KNL +
Sbjct: 71 EVQFCARKIPRVEPSE--RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK 128
Query: 110 SIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKR 169
SIDN L + F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++
Sbjct: 129 SIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 187
Query: 170 IYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN 227
++VGRF + +R L + A ++TN+++KN D+ +E L + F KFG S+ + DE+
Sbjct: 188 VFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES 247
Query: 228 GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKER 287
G S+GFGFV+F+ +DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++R
Sbjct: 248 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 307
Query: 288 ILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEA 347
I +Y+G N+YVKN+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA
Sbjct: 308 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEA 366
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PS 400
+KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA + VI PS
Sbjct: 367 TKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPS 426
Query: 401 GY----------PSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQV 449
GY + YY PP ++Q+ P P W A G RP FQ
Sbjct: 427 GYFMAAIPQTQNRAAYY--PPSQIAQLRPSP-----------RWTAQG----ARPHPFQN 469
Query: 450 SPLPVNPKHNRQNRGRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVP 505
P + P R M + +P+V + S+Q+ ++ + VP
Sbjct: 470 MPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVP 529
Query: 506 NGRI--------RELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLY 557
+ + LN V++ + V ++P + MLA+ P++QKQ+LGERL+
Sbjct: 530 QYKYAAGVRNPQQHLNAQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLF 587
Query: 558 PLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
PL++ P L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A+
Sbjct: 588 PLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAV 647
Query: 618 H 618
+
Sbjct: 648 N 648
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 38/216 (17%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD------------------- 225
+P+ +L++ +L DVTE L EKFS G I S+ + RD
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDXXXXXXXRWRRSHHPELLP 64
Query: 226 --ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
+ G F + + RAL+ MN VI K + +Q R+ LR
Sbjct: 65 APQPGEEVQFCARKIPRVEPSERALDTMNFDVIKGKPVRIMWSQ----RDPSLR------ 114
Query: 284 RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS 343
K N+++KN+D + ++ L FS G I S KV+ DE G +KG+GFV F +
Sbjct: 115 ------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFET 167
Query: 344 PEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
E A +A+ +G +L+ + ++V + +++R+A L
Sbjct: 168 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 203
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 266/620 (42%), Positives = 371/620 (59%), Gaps = 29/620 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS S+ S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL +DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA+RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D +
Sbjct: 250 HMNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ + VP P
Sbjct: 369 QRKEERKAILTNQYMQRVSTMRTLSNPLLGSFQQPSSYF------LPAVPQPPA------ 416
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
+ + G V PT+PA + + P P R + P Q S+Q +
Sbjct: 417 --QAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRPPVMPRCPPAHIGGIRQASTQVPRT 474
Query: 489 SKDSSNQQKGGQSKYVPN-------GRIRELNKGSGVSLGTFNSGGVMARKPD---MLNG 538
+ G P+ GR K S + T P +
Sbjct: 475 VPHTQRVANIGTQTTGPSGVGCCTPGRPLLPYKCSSAAHSTDQVQEPAVHIPGHEPLTAS 534
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K++
Sbjct: 535 MLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKID 594
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV VL+ +A + +H
Sbjct: 595 EAVAVLQAHQAVEQPKAFMH 614
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 154/288 (53%), Gaps = 16/288 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G+I+S +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I I S R + N+F+KNL+ + + L + FS FG I
Sbjct: 70 DTMNFEMLKGQPIR----IMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DE+G SRGFGFV+F+ + A++A+ MNG ++ + ++ + + ER L
Sbjct: 126 LSCKVVCDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAEL- 183
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
R L++ +N+YVKN+ DV ++ L+ FSQ G + S KVMRD G ++ FG
Sbjct: 184 -------GARALEF--TNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F EEA KAV +G + + LY + AQ++ +RQ L+ ++ Q
Sbjct: 235 FVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRRFEQ 282
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G+I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 282/642 (43%), Positives = 389/642 (60%), Gaps = 43/642 (6%)
Query: 2 AVVPPTATTPA--------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRST 53
AV+PP A SLYVGDL V +G+L + F + + S+RVC+D T +S
Sbjct: 17 AVIPPPTVAVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSL 76
Query: 54 CYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDN 113
Y YVNF S DA+ A+E N T ++GK +RI S RDP RKSG AN+F+KNL SIDN
Sbjct: 77 GYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDN 136
Query: 114 VRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG 173
L++ F FG ++SCKVA +G+SKG+GFVQFE+EESA +IE LNG + DK++YVG
Sbjct: 137 KALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVG 196
Query: 174 RFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
FI+ +R+ + +++TN+++KNL T++ L F+ G I S ++ D NG S+ F
Sbjct: 197 HFIRHQERIRAN-GSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCF 255
Query: 234 GFVNFDNPDDARRALEAMNGSVIG-SKVLYAARAQKKAEREQILRHQFEEKRKERILKYK 292
GFVNF N D A A+E ++G+V+G K LY RAQ+KAERE LR +FE++RK R K +
Sbjct: 256 GFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQ 315
Query: 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVN 352
G+N+Y+KN+DD + DE+LK FS+ GTITS KVM D+ G++KG GFV FSSP+EA+KA+N
Sbjct: 316 GANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALN 375
Query: 353 TFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ-HMAGIEGSSANVIPSGYPSLYYTTP- 410
+G M RKPLYVA+AQRKE+R+A LQ Q+AQ AG S + IP +P +P
Sbjct: 376 EMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAARVSPQ 435
Query: 411 --------PGIVSQVPPRP-GLMYQPL---GLRTGWRANGFVPPTRPAFQVSPLPVNPKH 458
PG+ PP+P G +QP G+R G N F+ P + Q P P
Sbjct: 436 QMYYGQGNPGL---APPQPAGYGFQPQLMSGMRPGMGPN-FLMPYQFQRQGQPGP----- 486
Query: 459 NRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELN----K 514
++ R GN P + S + +N + G +S +P G + +
Sbjct: 487 --RSGVRRGGNSQPLPQQQLPLRG--YGQSFRYMNNARNGLESPVLPQGLVSPMMPLAFD 542
Query: 515 GSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGM 574
GSGVS + A L LA+ S E Q+ +LGE+LYPLVE+ +P AK+TGM
Sbjct: 543 GSGVSSPPNDIQRSRAVPTSTLASALASASLENQRVMLGEQLYPLVERLEPSHAAKVTGM 602
Query: 575 LLEMDNSELLLLLESPESLAVKVEEAVQVLK--LSEAKVSTQ 614
LLEMD E+L L+ESP+ L KV EA++VL+ SE ++S Q
Sbjct: 603 LLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQ 644
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 268/622 (43%), Positives = 377/622 (60%), Gaps = 33/622 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ + VP P
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF------LPAVPQPPA------ 416
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQ---- 484
+ + G V PT+PA + + P P R + P + Q S+Q
Sbjct: 417 --QAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRPPVMPRRPPAHISSVRQASTQVPRM 474
Query: 485 ----SAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFN----SGGVMARKPDML 536
++ + GG P GR K S + T+ + V ++P +
Sbjct: 475 VPHTQRVANIGTQTTGPGGVGCCTP-GRPLLPYKCSSAAHSTYRIQEPAVHVPGQEP-LT 532
Query: 537 NGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K
Sbjct: 533 ASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAK 592
Query: 597 VEEAVQVLKLSEAKVSTQEAIH 618
++EAV VL+ +A + +H
Sbjct: 593 IDEAVAVLQAHQAMEQPKAYMH 614
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 268/620 (43%), Positives = 370/620 (59%), Gaps = 43/620 (6%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P TT SLYVGDL V+D +L++ FS+ + SVRVC+D T+ RS Y YVNF +P D
Sbjct: 42 PLPTT--SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLD 99
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA+EV N L+ K +R+ +S RDP +R+SG AN+F+KNL ++IDN L E F +FG
Sbjct: 100 AARALEVLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGT 159
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCKVA E G+SKG GFVQ+E EE+A AI++LNG + DK ++VG F++K +R
Sbjct: 160 ILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSF 219
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
K+ N+F+KNL T+E L++ F ++G I S ++ +G SR FGF+NF+NPD A
Sbjct: 220 DKTKFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAAS 279
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
RA++ +NG I K Y RAQKK+ERE L+ +FE+ K+ KY+G N+Y+KN+DD +
Sbjct: 280 RAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSI 339
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
D++L+ FS G ITS KVMRD+ G++KG GFV FS+ EEAS+A+ +G M+ KPLY
Sbjct: 340 GDDQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLY 399
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSS--ANVIPSGYPSL------YYTTPPGIVSQV 417
VA AQRKEDR+A LQ Q++Q + + A +P YP + Y PP + +
Sbjct: 400 VAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPM-YPPMAPQQLFYGQAPPAM---I 455
Query: 418 PPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAH 477
PP+PG +Q L G R G P P + V PV G P+ G
Sbjct: 456 PPQPGFGFQ-QQLVPGMRPGG---PHMPNYFV---PV----------VQQGQQGPRPGMR 498
Query: 478 YMQQSSQSAASSKDSSNQQKGGQSKYVPNGR-IRELNKGSGVSLG---TFNSGGVMARKP 533
+ G+ P GR + E GV+ G ++ GG R
Sbjct: 499 RGAGAQGQQPVPPFQQQIVPRGRMYRYPTGRNMPEAPAMPGVAGGMIQAYDMGGFPVRDA 558
Query: 534 DM--------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
+ L LA +PEQQ+ ILGE LYPLVE+ +P+ AK+TGMLLEMD +E+L
Sbjct: 559 AVSPAAQIGTLTSALANANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMDQTEVLH 618
Query: 586 LLESPESLAVKVEEAVQVLK 605
LLESP++L KV EA+ VL+
Sbjct: 619 LLESPDALKSKVAEAMDVLR 638
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 267/609 (43%), Positives = 377/609 (61%), Gaps = 23/609 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G S+G+GFV FET E+A AIE +NG + D++++VG F + +R + + A +
Sbjct: 131 VCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEVGARAIE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E FS+FGK S+ + D NG S+GFGFVNF+ ++A++A+
Sbjct: 190 FTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVA 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++LY RAQK+ ER+ L+ +FE+ ++ER+ +Y+G N+YVKN+DD + DE
Sbjct: 250 DMNGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGTITSAKVM-TEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGYPSLYYTTPPGIVSQVPPRPGLM 424
QRKE+R+A L QY Q +A + ++ PSGY P + P P +
Sbjct: 369 QRKEERKAILTNQYMQRLATMRALPGPLLGSFQTPSGYFLPPMPQPQTRAAFYGPSPVVP 428
Query: 425 YQPLGLRTGWRANGFVPPTRPAFQVSPL---PVNPKHNRQN--RGRMNGNMLPQV---GA 476
+P T W A PP P + +P+ V P+ N R +P+V
Sbjct: 429 VRPA---TRWSAQPSRPPLYP--EATPILRAAVPPRRLLSNISTTRQASTQVPRVPPQAQ 483
Query: 477 HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDML 536
+ +Q+ ++ SS+ G +Y + R + + + V ++P +
Sbjct: 484 RLVNIGTQTVSTRLPSSSALPRGTQQYKYSSSARNMQPMGHMPPVGEPAVHVQGQEP-LT 542
Query: 537 NGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
+LAA P++QKQ++GERLYPL+ P L KITGMLLE+DNSELLLLLESP+SL K
Sbjct: 543 ASLLAAAPPQEQKQMIGERLYPLIHVLHPSLAGKITGMLLEIDNSELLLLLESPDSLRSK 602
Query: 597 VEEAVQVLK 605
+EEAV VL+
Sbjct: 603 IEEAVTVLQ 611
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 107/195 (54%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI + + +Q R+ LR K NV++KN+DD
Sbjct: 66 ERALDTMNFEVIKGRPIRIMWSQ----RDPGLR------------KSGVGNVFIKNLDDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G ++G+GFV F + E A++A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A +
Sbjct: 169 FVGHFKSRKEREAEV 183
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 267/621 (42%), Positives = 373/621 (60%), Gaps = 31/621 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ + VP P
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF------LPAVPQPPA------ 416
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQ---- 484
+ + G V PT+PA + + P P R + P + Q S+Q
Sbjct: 417 --QAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRPPVMPRRPPAHISSVRQASTQVPRM 474
Query: 485 ----SAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD---MLN 537
++ + GG P GR K S + T+ P +
Sbjct: 475 VPHTQRVANIGTQTTGPGGVGCCTP-GRPLLPYKCSSAAHNTYRVQEPAVHIPGQEPLTA 533
Query: 538 GMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K+
Sbjct: 534 SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKI 593
Query: 598 EEAVQVLKLSEAKVSTQEAIH 618
+EAV VL+ +A + +H
Sbjct: 594 DEAVAVLQAHQAVEQPKAYMH 614
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 267/621 (42%), Positives = 373/621 (60%), Gaps = 31/621 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ + VP P
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF------LPAVPQPPA------ 416
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQ---- 484
+ + G V PT+PA + + P P R + P + Q S+Q
Sbjct: 417 --QAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRPPVMPRRPPAHISSVRQASTQVPRM 474
Query: 485 ----SAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD---MLN 537
++ + GG P GR K S + T+ P +
Sbjct: 475 VPHTQRVANIGTQTTGPGGVGCCTP-GRPLLPYKCSSAAHSTYRVQEPAVHIPGQEPLTA 533
Query: 538 GMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K+
Sbjct: 534 SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKI 593
Query: 598 EEAVQVLKLSEAKVSTQEAIH 618
+EAV VL+ +A + +H
Sbjct: 594 DEAVAVLQAHQAVEQPKAYMH 614
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 265/619 (42%), Positives = 376/619 (60%), Gaps = 46/619 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL V D +LFD F++ + SVRVC+D T+ +S Y YVN+ +P DA RA+E+
Sbjct: 126 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 185
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++G+ +RI +S RDP RKSG AN+F+KNL +SIDN L + F FGNI+SCKVA
Sbjct: 186 LNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVA 245
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQ+E +E+A+AAIE LNG + DK++YVG F++K +R + K+ N
Sbjct: 246 TDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSVKFNN 305
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL TE+ L E F KFG I S+++ RD +G S+ FGFVNF++PD+A A++ +N
Sbjct: 306 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN 365
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y RAQKK+ERE L+ +FE+ +E KY+ +N+Y+KN+DD V DE+L+
Sbjct: 366 GKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRE 425
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F++ GTITS KVMRD G ++G GFV F S ++AS+A+ + M+ KPLYVA+AQRK
Sbjct: 426 LFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRK 485
Query: 373 EDRQAHLQLQYAQH----MAGIEGSSANVIPSGYP---SLYYTTPPGIVSQVPPRPGLMY 425
EDR+A LQ Q++Q MA G ++P G P ++Y PP ++ P+PG +
Sbjct: 486 EDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPVGQQMFYGQPPAFIN---PQPGFGF 542
Query: 426 QPLGLRTGWRANGFVPPTRPAFQVSP---LPVNPKHNRQNR--GRMNGNMLPQVGAHYMQ 480
Q F+P RP P +P+ + + R GR + GA MQ
Sbjct: 543 Q----------QPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPAGR-------RAGAGGMQ 585
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIR---ELNKGSGVSLGTFNSGGVMARKP---- 533
QS Q + +Y P GR ++ GV + GG+ R
Sbjct: 586 QSMQMGQQQMMGRGGGR--GYRY-PTGRGMPDPAMHGVGGVMTSPYEMGGMPMRDAGASQ 642
Query: 534 ----DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
L LA PE Q+ +LGE LYPLV++ + D AK+TGMLLEMD +E+L LLES
Sbjct: 643 PVPIGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLES 702
Query: 590 PESLAVKVEEAVQVLKLSE 608
P++L KV EA++V + ++
Sbjct: 703 PDALKAKVAEAMEVFRSAQ 721
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 266/620 (42%), Positives = 372/620 (60%), Gaps = 49/620 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ G S+G GFV FET E+A+ AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD+ G SRGFGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVM 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE+ +++R +Y+G N+YVKN+DD + DE+
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGY--PSL--------YYTTPPGIV 414
QRKE+R+A L QY Q ++ + ++ P+ Y P++ YY + P
Sbjct: 369 QRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQPPAQAAYYASSPS-- 426
Query: 415 SQVPPRPGLMYQPLGLRTGWRANGFVPPT---RPAFQVSPLPVNPKHNRQNRGRMNGNML 471
V P P QP + + A+ PP RP QV N R +
Sbjct: 427 --VQPAPRWTAQPPRVSS---ASMVRPPAMLRRPPAQV------------NSVRQASTQV 469
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGV-SLGTFNSGGVMA 530
P G H + ++ ++ S G P G + S + G S +
Sbjct: 470 PPPGPHTQRVANIGTQTTGAS------GVGYSTPTGPVLTHKYSSAAHNPGVRESAVCIP 523
Query: 531 RKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
+ + MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESP
Sbjct: 524 GQEPLTASMLAAAPLHEQKQMIGERLYPLIYDTHTQLAGKITGMLLEIDNSELLLMLESP 583
Query: 591 ESLAVK-VEEAVQVLKLSEA 609
ESL K VEEA+ VL+ +A
Sbjct: 584 ESLNAKVVEEALAVLQAHQA 603
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +I+ Q R + K N+++KN++D
Sbjct: 66 ERALDTMNFEVI------------KGQPVRIMWSQ----RDPGLRKSGVGNIFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ D+ G ++GFGFV F + E A +A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + +R+A L
Sbjct: 169 FVGHFKSRREREAEL 183
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 271/631 (42%), Positives = 377/631 (59%), Gaps = 55/631 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA----- 66
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADGEYGNL 70
Query: 67 -IRAIEVKNHTQLHGKMLRISW-SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
++V H GK + W S RDP RKSGV N+F+KNL +SIDN L + F FG
Sbjct: 71 LFDRMDVCFHVA-GGKAFTLLWFSERDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 129
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV-- 182
NI+SCKV E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R
Sbjct: 130 NILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAE 188
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
L + A ++TN+++KN D+ +E L E FSK+GK S+ + D +G S+GFGFV+F+ +
Sbjct: 189 LGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHE 248
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
DA +A++ MNG + K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+D
Sbjct: 249 DANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLD 308
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
D + DE+L+ FS G+ITSAKVM +E G +KGFGFVCFSSPEEA+KAV +G ++ K
Sbjct: 309 DTIDDEKLRKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 367
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL-------- 405
PLYVA+AQRKE+R+AHL QY Q +AG+ AN + P GY P++
Sbjct: 368 PLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTLINQFQPAPGGYFVPAVPQTQSRPT 427
Query: 406 YYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSP------LPVNPKHN 459
YY P ++Q+ RPG +Q G R GF P Q P +P P +
Sbjct: 428 YYA--PNHMAQI--RPGPRWQQTG-----RPQGFQPMPNTLRQSGPRQSLRHMP--PSNT 476
Query: 460 RQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVS 519
+ RG +P V S+ + + VP +
Sbjct: 477 QGTRG------IPSVTQRV---GVSSSTQTMGPRPPVSAPPPRAVPPYKYTRCPLPGVQP 527
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
L T + + + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 528 LQTPQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 587
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
NSELL +LESPESL KVEEAV VL+ +AK
Sbjct: 588 NSELLHMLESPESLRSKVEEAVAVLQAHQAK 618
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 385/650 (59%), Gaps = 65/650 (10%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+R+C+D T S+ Y YVNF
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS RDP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SC V E+G SKG+GFV FET E+A AI+ +NG + ++++VG+F + +R
Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGY----------PSLYYTTP 410
KPLYVA+AQRKE+RQA+L +Y Q MA + + PSGY + YY P
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY--P 418
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-- 467
P ++++ P P W A G RP FQ P + P R M
Sbjct: 419 PSQIARLRPSP-----------RWTAQG----ARPHPFQNKPSAIRPGAPRVPFSTMRPA 463
Query: 468 GNMLPQVGAHYMQQSSQSAASSKDSSNQQKGG------------------QSKYVPNGRI 509
+ +P+V S+Q A ++S Q G + KY R
Sbjct: 464 SSQVPRV------MSTQRVA---NTSTQTVGPRPAAARAAAATPAVRTVPRYKYAAGVRN 514
Query: 510 RELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLV 568
+ ++ + + T V + + L LA+ P++QKQ+LGERL+PL++ P L
Sbjct: 515 PQQHRNAQPQV-TMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLA 573
Query: 569 AKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 574 GKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAVN 623
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/637 (41%), Positives = 383/637 (60%), Gaps = 42/637 (6%)
Query: 4 VPPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
P +T P ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+
Sbjct: 33 APQASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLN 92
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
D RA+E N++ + + RI WS RDP RK+G N+F+KNL E+IDN L + F
Sbjct: 93 AADGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVA 152
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGN++SCKVAT E G+SKG+GFV +ET E+A+ AI+++NG + DK++YVG I + +R
Sbjct: 153 FGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQ 212
Query: 183 --LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
L A++TNL++KNLD++VT+E E F+++G + S L+A DE G S+GFGFVN++
Sbjct: 213 SKLDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYER 272
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
++A+RA++ ++ + + K L+ ARAQKKAERE LR +E+ + E++ KY+G N+Y+KN
Sbjct: 273 HEEAQRAVDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGINLYIKN 332
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
++DD D++L+A F G ITS KVMRDEKG +KGFGFVCFSSP+EA+KAV + M+
Sbjct: 333 LEDDFDDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIG 392
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQ-HMAGIEGSSANVIPSGYPS--LYYTT-------- 409
KPLYV++AQR+E R+ L+ Q AQ + ++ ++A +P GY + +YY
Sbjct: 393 TKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGVPGGYINGPMYYPPGPGFPPQG 452
Query: 410 ------------------PPGIVSQVPPRPGLM---YQPLGLRTGWRANGFVPPTRPAFQ 448
P G V +PP PG QP G+ G+ G RP
Sbjct: 453 RGMMGYGQPGMMPPRIRYPNGQVPSMPPVPGPYGQGPQPYGM-PGYPPRGA---PRPPVA 508
Query: 449 VSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGR 508
P +P H R NG P GA A S G++ +
Sbjct: 509 RGPG-SSPTHPSVPMPRANGPA-PNGGAARPAPQGAPAGSRAPPPGAPAPGRAPQPAYNK 566
Query: 509 IRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLV 568
+ +G+ V+ + + P++ LAA SP +QKQ+LGE +Y + +P+L
Sbjct: 567 PQARPQGAPVT-AQPAAAPQQSSLPNLTADQLAAASPMEQKQMLGEVIYMRIVPSQPELA 625
Query: 569 AKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
KITGMLLEMDN+ELL LL+S E++ KV+EA VL+
Sbjct: 626 GKITGMLLEMDNNELLALLDSEEAMNAKVQEANTVLQ 662
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 279/648 (43%), Positives = 377/648 (58%), Gaps = 65/648 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS K S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFS---KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 246
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 247 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 306
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 307 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 365
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 366 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 423
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG--- 464
++Q+ P P + G R GF Q P P + P N +RG
Sbjct: 424 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPT 476
Query: 465 --RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
+ G+ P A M AA + + Q GG V N R +
Sbjct: 477 TTQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVA 534
Query: 523 FNSGGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYPLVEK 562
R P L AP P ++QKQ+LGERL+PL++
Sbjct: 535 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQT 594
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 595 MHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 642
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 385/650 (59%), Gaps = 65/650 (10%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+R+C+D T S+ Y YVNF
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS RDP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SC V E+G SKG+GFV FET E+A AI+ +NG + ++++VG+F + +R
Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGY----------PSLYYTTP 410
KPLYVA+AQRKE+RQA+L +Y Q MA + + PSGY + YY P
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVTQTQNHAAYY--P 418
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-- 467
P ++++ P P W A G RP FQ P + P R M
Sbjct: 419 PSQIARLRPSP-----------RWTAQG----ARPHPFQNKPSAIRPGAPRVPFSTMRPA 463
Query: 468 GNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQS------------------KYVPNGRI 509
+ +P+V S+Q A ++S Q G + KY R
Sbjct: 464 SSQVPRV------MSTQRVA---NTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRN 514
Query: 510 RELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLV 568
+ ++ + + T V + + L LA+ P++QKQ+LGERL+PL++ P L
Sbjct: 515 PQQHRNAQPQV-TMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLA 573
Query: 569 AKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 574 GKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAVN 623
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 385/650 (59%), Gaps = 65/650 (10%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+R+C+D T S+ Y YVNF
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS RDP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SC V E+G SKG+GFV FET E+A AI+ +NG + ++++VG+F + +R
Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGY----------PSLYYTTP 410
KPLYVA+AQRKE+RQA+L +Y Q MA + + PSGY + YY P
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY--P 418
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-- 467
P ++++ P P W A G RP FQ P + P R M
Sbjct: 419 PSQIARLRPSP-----------RWTAQG----ARPHPFQNKPSAIRPGAPRVPFSTMRPA 463
Query: 468 GNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQS------------------KYVPNGRI 509
+ +P+V S+Q A ++S Q G + KY R
Sbjct: 464 SSQVPRV------MSTQRVA---NTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRN 514
Query: 510 RELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLV 568
+ ++ + + T V + + L LA+ P++QKQ+LGERL+PL++ P L
Sbjct: 515 PQQHRNAQPQV-TMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLA 573
Query: 569 AKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 574 GKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAVN 623
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 385/650 (59%), Gaps = 65/650 (10%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+R+C+D T S+ Y YVNF
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS RDP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SC V E+G SKG+GFV FET E+A AI+ +NG + ++++VG+F + +R
Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGY----------PSLYYTTP 410
KPLYVA+AQRKE+RQA+L +Y Q MA + + PSGY + YY P
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY--P 418
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-- 467
P ++++ P P W A G RP FQ P + P R M
Sbjct: 419 PSQIARLRPSP-----------RWTAQG----ARPHPFQNKPSAIRPGAPRVPFSTMRPA 463
Query: 468 GNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQS------------------KYVPNGRI 509
+ +P+V S+Q A ++S Q G + KY R
Sbjct: 464 SSQVPRV------MSTQRVA---NTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRN 514
Query: 510 RELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLV 568
+ ++ + + T V + + L LA+ P++QKQ+LGERL+PL++ P L
Sbjct: 515 PQQHRNAQPQV-TMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLA 573
Query: 569 AKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 574 GKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAVN 623
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 277/669 (41%), Positives = 380/669 (56%), Gaps = 79/669 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI---- 67
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P D +
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVVNVV 70
Query: 68 ---------------------------------------RAIEVKNHTQLHGKMLRISWS 88
RA++ N + G+ +RI WS
Sbjct: 71 TQRGFTRMAACVPHTCLANVPTIVPTMLDPRPHSTVNAERALDTMNFDMIKGRPIRIMWS 130
Query: 89 CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFE 148
RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKVA E G SKG+GFV FE
Sbjct: 131 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFE 190
Query: 149 TEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
TEE+AN +I+ +NG + K++YVG+FI K+ ++ L A +TN+++KN D+TE+
Sbjct: 191 TEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTEDK 250
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGS-KVLYAAR 265
L + F K+G I S + ++G SRGFGFV F++PD A +A+ +NG I K +Y R
Sbjct: 251 LKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYVGR 310
Query: 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
AQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE L+ F+ GTITSAKV
Sbjct: 311 AQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKV 370
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
M +E G +KGFGFVCFS PEEA+KAV +G ++ KPLYVA+AQRKEDR+AHL QY Q
Sbjct: 371 MMEE-GRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQ 429
Query: 386 HMAGIEGSSANVI--PSGYPSLYYTT--------PPGIVSQVPPRPGLMYQPLGLR--TG 433
MA + I PS S + T P ++Q+ P QP +R T
Sbjct: 430 RMANVRMQQMGQIFQPSNAGSYFVPTLPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNTQ 489
Query: 434 WRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ-------VGAHYMQQSSQSA 486
+GF + Q +P P+ G + +M + VG MQ + +
Sbjct: 490 TGTSGFA-----SMQAAPFRAAPRAPAAQAGALRNSMSARPITGQQAVGGANMQSRTMAG 544
Query: 487 ASSKDSSNQQKGGQSKYVPNGR-----IRELNKGSGVSLGTFNSGGVMARKPDMLNGMLA 541
+ S Q + KY N R + SG S+ + + ++P + MLA
Sbjct: 545 PAVGVSPGQSRPSNYKYTANMRNPPQTAMAIPAPSGPSVQ--QAVHIQGQEP-LTASMLA 601
Query: 542 APSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAV 601
A P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE ESL KVEEAV
Sbjct: 602 AAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHSESLKAKVEEAV 661
Query: 602 QVLKLSEAK 610
VL+ +AK
Sbjct: 662 AVLQAHQAK 670
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 60/239 (25%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L +D+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 -------------------------------------------ARRALEAMNGSVIGSKV 260
A RAL+ MN +I +
Sbjct: 65 VVVNVVTQRGFTRMAACVPHTCLANVPTIVPTMLDPRPHSTVNAERALDTMNFDMIKGRP 124
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+ +Q R+ LR K NV++KN+D ++ ++ + FS G I
Sbjct: 125 IRIMWSQ----RDPSLR------------KSGVGNVFIKNLDKNIDNKAMYDTFSAFGNI 168
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
S KV +DE G +KG+GFV F + E A+K+++ +G +L+ K +YV +++R+ L
Sbjct: 169 LSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKEL 227
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 276/659 (41%), Positives = 371/659 (56%), Gaps = 80/659 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD------ 65
ASLYVG+LH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P D
Sbjct: 11 ASLYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVVVGD 70
Query: 66 ----------------AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIE 109
A RA++ N + G+ +RI WS RDP RKSGV N+F+KNL +
Sbjct: 71 GGSGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDK 130
Query: 110 SIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKR 169
+IDN + + F FGNI+SCKV E G SKG+GFV FETEE+AN +IE +NG + K+
Sbjct: 131 NIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKVNGMLLNGKK 190
Query: 170 IYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN 227
+YVG+FI + +R L A +TN+++KN D+T++ L E F K+G I S + ++
Sbjct: 191 VYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDD 250
Query: 228 GTSRGFGFVNFDNPDDARRALEAMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKE 286
G SRGFGFV F++P+ A +A+ +NG I K +Y RAQKKAER+Q L+ +FE+ + E
Sbjct: 251 GKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIE 310
Query: 287 RILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEE 346
R+ +Y+G N+YVKN+DD + DE L+ F+ GTITSAKVM +E G +KGFGFVCFS PEE
Sbjct: 311 RLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEE-GRSKGFGFVCFSQPEE 369
Query: 347 ASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI---PSGYP 403
A+KAV +G ++ KPLYVA+AQRKEDR+AHL QY Q MA + I P
Sbjct: 370 ATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMANMRMQQMGQIFHQPGNAG 429
Query: 404 SLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNR 463
S + T P+P Y P + RA P + P V P N
Sbjct: 430 SYFVPT--------LPQPQRFYGPAQM-AQIRAT-------PRWPAQPNQVRPNAQTGNS 473
Query: 464 G-----------------------RMNGNMLPQVG----AHYMQQSSQSAASSKDSSNQQ 496
G R N + P G ++ MQ S + + S Q
Sbjct: 474 GFASMQAAPFRAAPRAPAAQAGALRNNMSARPITGLQAVSNNMQSRSMAGPAVGVSPGQS 533
Query: 497 KGGQSKYVPNGR-----IRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQI 551
+ KY N R L SG S+ + + ++P + MLAA P++QKQ+
Sbjct: 534 RPSNYKYTANMRNPPQAAMALPTPSGPSMQ--QAVHIQGQEP-LTASMLAAAPPQEQKQM 590
Query: 552 LGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
LGERL+PL+ P L KITGMLLE+DNSELL +LE ESL KV+EAV VL+ +AK
Sbjct: 591 LGERLFPLIHDMNPQLTGKITGMLLEIDNSELLHMLEHKESLKAKVDEAVAVLQAHQAK 649
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 106/218 (48%), Gaps = 39/218 (17%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ NL +D+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ----------------------ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE 281
A RAL+ MN +I + + +Q R+ LR
Sbjct: 65 VVVVGDGGSGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRIMWSQ----RDPSLR---- 116
Query: 282 EKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCF 341
K NV++KN+D ++ ++ + FS G I S KV +DE G +KG+GFV F
Sbjct: 117 --------KSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHF 168
Query: 342 SSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
+ E A+K++ +G +L+ K +YV +++RQ L
Sbjct: 169 ETEEAANKSIEKVNGMLLNGKKVYVGKFIPRKERQKEL 206
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 265/617 (42%), Positives = 376/617 (60%), Gaps = 33/617 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD++G SRGFGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE+
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY---Q 426
QRKE+R+A L QY Q ++ + ++ S Y P V Q PP Y
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLP--AVPQ-PPAQAPYYGSGP 425
Query: 427 PLGLRTGWRANGFVPP-------TRPAFQVSPLPVNPKHNRQNRGRMNGNMLP--QVGAH 477
P+ W A PP RPA +S P+ P + + +++P Q A+
Sbjct: 426 PIQPAPRWTAQ---PPRPSCASVVRPA-AMSRRPLTPVGSSRQVSTHVPHLVPHTQRVAN 481
Query: 478 YMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLN 537
Q++ + + + ++ + P R + + + V ++P +
Sbjct: 482 IGTQTTGPSMTGCSTPSRPLLTHTYSTPAHRTDRVQE---------PAVHVPGQEP-LTA 531
Query: 538 GMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
MLAA +QKQ++GERL+PLV L KITGMLLE+DNSELLL+LESPESL KV
Sbjct: 532 SMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLESPESLNAKV 591
Query: 598 EEAVQVLKLSEAKVSTQ 614
EEA+ VL+ +A Q
Sbjct: 592 EEALAVLQAHQATEHMQ 608
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +I+ Q R + K N+++KN++D
Sbjct: 66 ERALDTMNFEVI------------KGQPIRIMWSQ----RDPGLRKSGVGNIFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G ++GFGFV F + E A A++T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + +R+ L
Sbjct: 169 FVGHFKSRREREVEL 183
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 385/650 (59%), Gaps = 65/650 (10%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+R+C+D T S+ Y YVNF
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS RDP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SC V E+G SKG+GFV FET E+A AI+ +NG + ++++VG+F + +R
Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGY----------PSLYYTTP 410
KPLYVA+AQRKE+RQA+L +Y Q MA + + PSGY + YY P
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY--P 418
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-- 467
P ++++ P P W A G RP FQ P + P R M
Sbjct: 419 PSQIARLRPSP-----------RWTAQG----ARPHPFQNKPSAIRPGAPRVPFSTMRPA 463
Query: 468 GNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQS------------------KYVPNGRI 509
+ +P+V S+Q A ++S Q G + KY R
Sbjct: 464 SSQVPRV------MSTQRVA---NTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRN 514
Query: 510 RELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLV 568
+ ++ + + T V + + L LA+ P++QKQ+LGERL+PL++ P L
Sbjct: 515 PQQHRNAQPQV-TMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLA 573
Query: 569 AKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 574 GKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAVN 623
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 269/617 (43%), Positives = 378/617 (61%), Gaps = 34/617 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL+PDVT+ LF+ FS+ + S+RVC+D T RS Y YVNF P DA RAI+
Sbjct: 11 ASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAERAID 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + G+ RI WS RDP R+SGV N+F+KNL ++IDN L + F FGNI+SCK+
Sbjct: 71 TMNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKNIDNKGLYDAFSAFGNILSCKI 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A S+G+GFV +ET+E+A+ AI +NG + DK+++VG F+ K +R+ L A K
Sbjct: 131 AVDSKNVSRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVFVGEFMSKRERLEKLGDQAKK 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+ N+F+KN + EE L E F K G+I S ++ E+G S+GFGFV F+ P+ A A+
Sbjct: 191 FKNVFVKNFGDSLDEEKLKEMFGKHGEITSCVVM-AESGKSKGFGFVAFEAPEAAEAAVN 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG I + L RAQKKAER L+ +FE ++ ERI +Y+G N+Y+KN++D + DE
Sbjct: 250 ELNGLEIEGRKLVVCRAQKKAERTMELKSRFEAQKMERINRYQGVNLYIKNLEDGLDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L++ FS GTITSAKVM+DEKGI+KGFGFVCFSSP+EA+KAV +G +L KPLYVA+A
Sbjct: 310 LRSEFSTYGTITSAKVMKDEKGISKGFGFVCFSSPDEATKAVTEMNGRILVTKPLYVALA 369
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIP-------SGYPSLYYTTPPGIVSQVPPRPG 422
QRKE+R+A L Q+ Q + + +++ +P +G P Y T P +Q P
Sbjct: 370 QRKEERRAQLSTQFLQRVNPLRYNASGTMPQAGYSFQAGQPGFYIPTVP--TNQRP---- 423
Query: 423 LMYQPLG--LRTGWRANGFVPP----TRPAFQVSPL-----PVNPKHN-RQNRGRMN-GN 469
+ Q + R W++ V T+ A V+ + P P+H N R
Sbjct: 424 FITQSVNQITRPRWQSQAPVQQIPANTQYASHVTQIRAGAAPPRPRHQGAPNVARREPAP 483
Query: 470 MLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVM 529
P +G M + + QQ+ KY PN R + +G +G + +
Sbjct: 484 YQPGMGTRTMPSQQVPIRPNVPAVAQQRTA-YKYNPNTRNQ---YPAGQMIGQPDQAAAI 539
Query: 530 ARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLE 588
+ PD L +LA +P +QKQ++GERL+PLV++ +P L KITGMLLE+DNSELL +LE
Sbjct: 540 IQGPDQLTSTILATATPTEQKQMIGERLFPLVQEFQPHLAGKITGMLLEIDNSELLHMLE 599
Query: 589 SPESLAVKVEEAVQVLK 605
S + L KVEEAVQVL+
Sbjct: 600 SRDLLRAKVEEAVQVLQ 616
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASK 349
Y +++YV +++ DVT+ L FSQ G + S +V RD + G+ +V F P +A +
Sbjct: 8 YPIASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + + +P + +QR
Sbjct: 68 AIDTMNYDPIKGRPCRIMWSQR 89
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 265/621 (42%), Positives = 375/621 (60%), Gaps = 27/621 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RV +D T RS Y VNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP R+SGV N+F+KNL ++IDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKGHGFV FETEE+A AIE +NG + D++++VG+F + +R L + +
Sbjct: 131 VCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN + ++ L F +FG++ S+ + DE G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y AQKK +R L+ +FE+ ++R ++Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITS KVM E G +KGFGFVCFSSPEEA+KAV+ +G ++ KPLYVA+A
Sbjct: 310 LQKEFSPFGTITSTKVM-TEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI------PSGYPSLYYTTPPGIVSQVPPRPGL 423
QRKE+RQAHL QY Q MA + ++I PSGY P + P P
Sbjct: 369 QRKEERQAHLTNQYIQRMASVRSGPNSLINAYQPAPSGY---SVAAVPQTQNCAPCCPSQ 425
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA--HYMQQ 481
+ QP T W A G P P + P PK + R + + +PQV A
Sbjct: 426 IVQP-SPSTRWTAQGARPHPFPNVSGASHPAAPKSSFTTV-RPSSSHVPQVMAAQRITNT 483
Query: 482 SSQSA------ASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM 535
S+Q+ ASS ++ + Q KY +R + L S + ++P
Sbjct: 484 SAQTTGQRPALASSPATTPVRSIPQYKYATG--VRNSQQHLNAQLVQQPSVCIQGQEPWT 541
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
+ + A P++QKQ+LGERL+PL++ P L KITGMLLE+DNSE L +L+SPESL
Sbjct: 542 ASTLGTA--PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHMLDSPESLCS 599
Query: 596 KVEEAVQVLKLSEAKVSTQEA 616
+ +EAV L+ +A + Q+A
Sbjct: 600 RAQEAVSALQAHQANEAAQKA 620
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ VNF+ P DA
Sbjct: 6 PGCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +Q R + + NV++KN++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQ----------------RDPSLRRSGVGNVFIKNLNKT 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G +KG GFV F + E A +A+ +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A L
Sbjct: 169 FVGQFKSRKEREAEL 183
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 266/641 (41%), Positives = 383/641 (59%), Gaps = 48/641 (7%)
Query: 4 VPPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
P +T P ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+
Sbjct: 33 APQASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLN 92
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
D RA+E N++ + + RI WS RDP RK+G N+F+KNL E+IDN L + F
Sbjct: 93 AADGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVA 152
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGN++SCKVAT E G+SKG+GFV +ET E+A+ AI+++NG + DK++YVG I + +R
Sbjct: 153 FGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQ 212
Query: 183 --LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
L A++TNL++KNLD++VT+E E F+++G + S L+A DE G S+GFGFVN++
Sbjct: 213 SKLDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYER 272
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
++A+RA++ ++ + + K L+ ARAQKKAERE LR +E+ + E++ KY+G N+Y+KN
Sbjct: 273 HEEAQRAVDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGVNLYIKN 332
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
++DD D++L+A F G ITS KVMRDEKG +KGFGFVCFSSP+EA+KAV + M+
Sbjct: 333 LEDDFDDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIG 392
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQ-HMAGIEGSSANVIPSGYPS--LYYTT-------- 409
KPLYV++AQR+E R+ L+ Q AQ + ++ ++A +P GY + +YY
Sbjct: 393 TKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGVPGGYINGPMYYPPGPGFPPQG 452
Query: 410 ------------------PPGIVSQVPPRPGLM---YQPLGLRTGWRANGFVPPTRPAFQ 448
P G V +PP PG QP G+ G+ G RP
Sbjct: 453 RGMMGYGQPGMMPPRIRYPNGQVPSMPPVPGPYGQGPQPYGM-PGYPPRGA---PRPPVA 508
Query: 449 VSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGR 508
P +P H R NG P GA S G++ +
Sbjct: 509 RGPG-SSPTHPSVPMPRANGPA-PNGGAARPAPQGAPTGSRAPPPGAPAPGRAPQPAYNK 566
Query: 509 IRELNKGSGVSLGTFNSGGVMARK----PDMLNGMLAAPSPEQQKQILGERLYPLVEKHK 564
+ +G+ V T V A + P++ LAA SP +QKQ+LGE +Y + +
Sbjct: 567 PQARPQGAPV---TAQPAAVPAPQQSGLPNLTADQLAAASPMEQKQMLGEVIYMRIVPSQ 623
Query: 565 PDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
P+L KITGMLLEMDN+ELL LL+S E++ KV+EA VL+
Sbjct: 624 PELAGKITGMLLEMDNNELLALLDSEEAMNAKVQEANTVLQ 664
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 272/639 (42%), Positives = 369/639 (57%), Gaps = 54/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RV +D TT RS Y VNF DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+FVKNL SID+ L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E A AIE +NG + D++++VGRF + DR L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL D+ +E L FSKFG S+ + DE+G S+GFGFV+F+ +DAR+A++
Sbjct: 190 FTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKER----------ILKYKGSNVYVK 299
MNG + K +Y RAQKK ER+ L+H+F + ++++ ++ +G N+YVK
Sbjct: 250 EMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVK 309
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+DD + DE L+ FS GTITSAKV E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 310 NLDDGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 368
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI----PSGYPSLYYTTPPGIVS 415
KPLYVA+AQRKE+RQAHL QY Q MA S+ VI P+ PS Y+ T
Sbjct: 369 ATKPLYVALAQRKEERQAHLSNQYMQRMASTSAVSSPVINPFQPAQAPSGYFMTTTSQTQ 428
Query: 416 QVPPRPGLMYQP----------LGLRTGWRANGF-------VPPTRPAFQVSPLPVNPKH 458
G Y P G G RA+ F P T P+F S
Sbjct: 429 NC----GAYYAPNQTTQQGPGHRGSAQGARAHPFQNMSSAIQPATIPSFSTS-------- 476
Query: 459 NRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGV 518
G + L + H +S S ++ Q KY R + +
Sbjct: 477 -----GPASSQALRSMSTHRAGSASTQMMGSHPTARPVP--QYKYTAGVRNPPQHLSAQP 529
Query: 519 SLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEM 578
+ S + K + MLA+ SP+ QKQ+LGE L+ L++ P L KITGMLLE+
Sbjct: 530 QVTMQRSAVPVQGKASLTASMLASASPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEI 589
Query: 579 DNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
DN EL +LESPE L K++EA+ VL+ +AK + Q+A+
Sbjct: 590 DNLELRHMLESPECLHTKIDEAIAVLQAHQAKETPQQAV 628
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF--VNFDNPDD 243
P+ +L++ +L DVTE L EKFS G I S+ + RD T R G+ VNF +D
Sbjct: 6 PSYSLASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRT-TRRSLGYASVNFQQLED 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN VI K + +Q R + K N++VKN+D
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQ----------------RDPSLRKSGVGNIFVKNLDR 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ + L FS G I S KV+ DE G +KG+GFV F + EEA +A+ +G L+ +
Sbjct: 109 SIDSKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRK 167
Query: 364 LYVAIAQRKEDRQAHL 379
++V + + DRQA L
Sbjct: 168 VFVGRFKSRRDRQAEL 183
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/645 (41%), Positives = 364/645 (56%), Gaps = 59/645 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+ + LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP R+SGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
AT E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 122 ATDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN + +E L E F +GKI S + ++G S+GFGFV ++ + A A++
Sbjct: 182 FTNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQ 241
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G K LY ARAQKKAER+Q L+ +FEE +K+R G N+YVKN+DD + DE
Sbjct: 242 ALNGKDMGEGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM DE+G +KGFGFVCF SP EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE-----------GSSANVIPSGYPSLYYTTP------- 410
AQRKE+R+AHL QY +HM G+ +S +P+ PS + P
Sbjct: 362 AQRKEERKAHLASQYMRHMTGMRMQQLGQLFQPNAASGFFVPTMAPSQRFFGPQMTPQMR 421
Query: 411 --PGIVSQVPPRPGLMYQPL---------------------GLRTGWRANGFVPPTRPAF 447
P Q+ RP Q + + T +R +G A
Sbjct: 422 NTPRWAQQI--RPATAVQSVQAGAASAGASAAAGGFQGAAGAVPTQFRQSG-----TGAR 474
Query: 448 QVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGG------QS 501
P V H NM Q S +A + + + Q GG
Sbjct: 475 GAQPQQVQGTHAAAAAAAAASNMRSSGARAITGQQSVAAPNMQIAGAQIAGGAPQRTTTY 534
Query: 502 KYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVE 561
KY N R + + G K ++ +LA P++QKQILGERLYP++E
Sbjct: 535 KYTANMRNPPVQQMQQAQPMPQQLQGKNQEK--LIASLLANAKPQEQKQILGERLYPMIE 592
Query: 562 KHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKL 606
+ L KITGMLLE++NSELL +LE E+L KVEEAV VL++
Sbjct: 593 RMHAALAGKITGMLLEIENSELLHMLEDQEALKAKVEEAVAVLQV 637
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 268/616 (43%), Positives = 365/616 (59%), Gaps = 45/616 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL VTD +L++ FS+ + SVRVC+D ++ RS Y YVNF +P DA RA+E+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N L+GK +R+ +S RDP +R+SG AN+F+KNL ++ID+ L + F FGNI+SCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T E G+SKG GFVQ++ E+A +AI++LNG + DK +YVG F++K +R K+ N
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL T+E LV+ F +G I S +I +G SR FGF+NF +PDDA RA+E +N
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I K Y RAQKK+ERE L+ +FE+ K+ KY+G N+Y+KN+DD + D++L
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS G ITS K+MRD G++KG GFV FS+ EEAS+A+ +G M+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 399
Query: 373 EDRQAHLQLQYAQ--------HMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLM 424
EDR+A LQ Q++Q MA + P G Y PP I +PP+PG
Sbjct: 400 EDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPMAPLGQQLFYGQAPPAI---MPPQPGFG 456
Query: 425 YQPL---GLRTGW--RANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYM 479
+Q G+R G N FVP + Q P P R G G Q M
Sbjct: 457 FQQQLVPGMRPGGAHMPNYFVPVVQQG-QQGP---RPGIRRSGAGSAQGQQSAQPFQQQM 512
Query: 480 QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLG---TFNSGGVMARKPDM- 535
+G +Y P + ++ GV+ G +++ GG R +
Sbjct: 513 ---------------LPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMGGFPVRDAGLS 557
Query: 536 ------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
L LA +PEQQ+ ILGE LYPLVE + + AK+TGMLLEMD +E+L LLES
Sbjct: 558 PAPIGTLTSALANANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLES 617
Query: 590 PESLAVKVEEAVQVLK 605
PE+L KV EA+ VL+
Sbjct: 618 PEALKSKVAEAMDVLR 633
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 257/617 (41%), Positives = 368/617 (59%), Gaps = 19/617 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RV +D T RS Y VNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP R+SGV N+F+KNL ++IDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ E+G SKGHGFV FETEE+A AIE +NG + D++++VGRF + +R L + +
Sbjct: 131 VSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN + +E L F +FG+I S+ + DE G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK +R L+H+FE+ +++ ++Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITS KVM E G +KGFGFVCFSSPEEA+KAV+ +G ++ KPLYVA+A
Sbjct: 310 LQKEFSPFGTITSTKVM-TEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP--PGIVSQVPPRPGLMYQP 427
QRKE+RQAHL QY Q MA + V P S Y+ P + VP P + QP
Sbjct: 369 QRKEERQAHLTNQYIQRMASVRSGPNPVNPYQPASSSYSVAAVPQTQNCVPCCPSQIAQP 428
Query: 428 LGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAA 487
W A G P P + P P+ + R + + + AH + +S
Sbjct: 429 RP-SARWIAQGSRPHPFPNVPGAIHPAAPRSSLTTV-RPSSSHVQVTTAHRITNTSAQIT 486
Query: 488 SSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDML-------NGML 540
+ + + P I + +GV + +A++P + +
Sbjct: 487 GQRPAP----ASSATATPVHSIPQYKYAAGVQNSQQHLNAQLAQQPAVCIQGQEPWTASM 542
Query: 541 AAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA 600
+P++ KQ+LGERL+PL++ P L KITGMLL++DNSE L +LESP S + EEA
Sbjct: 543 LVTAPQEPKQMLGERLFPLIQAMHPTLAGKITGMLLDIDNSEPLRMLESPVSRCSRAEEA 602
Query: 601 VQVLKLSEAKVSTQEAI 617
V L+ + K + Q+A+
Sbjct: 603 VATLQAHQVKEAAQKAV 619
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ VNF+ P DA
Sbjct: 6 PGCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +Q R + + NV++KN++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQ----------------RDPSLRRSGVGNVFIKNLNKT 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G +KG GFV F + E A +A+ +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A L
Sbjct: 169 FVGRFKSQKEREAEL 183
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 280/642 (43%), Positives = 388/642 (60%), Gaps = 43/642 (6%)
Query: 2 AVVPPTATTPA--------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRST 53
AV+PP A SLYVGDL V +G+L + F + + S+RVC+D T +S
Sbjct: 17 AVIPPPTVAVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSL 76
Query: 54 CYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDN 113
Y YVNF S DA+ A+E N T ++GK +RI S RDP RKSG AN+F+KNL SIDN
Sbjct: 77 GYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDN 136
Query: 114 VRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG 173
L++ F FG ++SCKVA +G+SKG+GFVQFE+EESA +IE LNG + DK++YVG
Sbjct: 137 KALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVG 196
Query: 174 RFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
FI+ +R+ + +++TN+++KNL T++ L F+ G I S ++ D NG S+ F
Sbjct: 197 HFIRHQERIRAN-GSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCF 255
Query: 234 GFVNFDNPDDARRALEAMNGSVIG-SKVLYAARAQKKAEREQILRHQFEEKRKERILKYK 292
GFVNF N D A A+E ++G+V+G K LY RAQ+KAERE L+ +FE++RK R K +
Sbjct: 256 GFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQ 315
Query: 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVN 352
G+N+Y+KN+DD + DE+LK FS+ GTITS KVM D+ G++KG GFV FSSP+EA+KA+N
Sbjct: 316 GANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALN 375
Query: 353 TFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ-HMAGIEGSSANVIPSGYPSLYYTTP- 410
+G M RKPLYVA+AQRKE+R+A LQ Q+AQ AG S + IP +P +P
Sbjct: 376 EMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAARVSPQ 435
Query: 411 --------PGIVSQVPPRP-GLMYQPL---GLRTGWRANGFVPPTRPAFQVSPLPVNPKH 458
PG+ PP+P G +QP G+R G N F+ P + Q P P
Sbjct: 436 QMYYGQGNPGL---APPQPAGYGFQPQLMSGMRPGMGPN-FLMPYQFQRQGQPGP----- 486
Query: 459 NRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELN----K 514
+ R GN P + S + +N + G ++ +P G + +
Sbjct: 487 --RLGVRRGGNSQPLPQQQLPLRG--YGQSFRYMNNARNGLETPVLPQGLVSPMMPLAFD 542
Query: 515 GSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGM 574
GSGVS + A L LA+ S E Q+ +LGE+LYPLVE+ +P AK+TGM
Sbjct: 543 GSGVSSPPNDIQRSRAVPTSTLASALASASLENQRVMLGEQLYPLVERLEPSHAAKVTGM 602
Query: 575 LLEMDNSELLLLLESPESLAVKVEEAVQVLK--LSEAKVSTQ 614
LLEMD E+L L+ESP+ L KV EA++VL+ SE ++S Q
Sbjct: 603 LLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQ 644
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 265/629 (42%), Positives = 372/629 (59%), Gaps = 56/629 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 SSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SID+ L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F +R L + A
Sbjct: 131 ACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHREREAELGAQALA 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL D+ E+ L + F +FGK+ S+ + RD +G SRGFGFVNF+ ++A++A++
Sbjct: 190 FTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + + LY RAQK+ ER+ L+ +FE+ +++R +Y+G N+YVKN+DD ++DE+
Sbjct: 250 HMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNLDDSISDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRTVFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ ++ V+ S P+ Y+ P + QP
Sbjct: 369 QRKEERKAILTNQYMQRLSTVQALGRPVMGSFQQPNSYFL--PAVA-----------QPP 415
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
T + +G V P +PA P+ Q PQ +
Sbjct: 416 AQATCYGGSGSVAPVQPA---------PRWTAQ----------PQRASLVRPPGLPRRPR 456
Query: 489 SKDSSNQQKGGQSKYVPNGRIRELNKGS------------GVSL-GTFNSGGV------M 529
+ SS +Q Q Y+ + N G+ G SL + GV +
Sbjct: 457 AHVSSVRQASTQVPYLAPHTKKVANIGTQTMGASRACSTEGPSLSAVLTAHGVPEPAVHV 516
Query: 530 ARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
+ + MLAA +QKQ++GERLY L+ + L KITGMLLE+DNSELLL+LES
Sbjct: 517 PGQEPLTASMLAAAPLHEQKQMIGERLYRLIPEVYAALAGKITGMLLEIDNSELLLMLES 576
Query: 590 PESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
PESL KVEEAV VL+ +A +E +H
Sbjct: 577 PESLQAKVEEAVAVLQAHQAMEQPKEYMH 605
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y S++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ +P+ + +QR
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQR 89
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/624 (42%), Positives = 367/624 (58%), Gaps = 41/624 (6%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
+ V P TT SLYVGDL V+D +L++ FS+ + SVRVC+D T+ RS Y YVNF
Sbjct: 31 LGVAQPLPTT--SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNF 88
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
+P DA RA+EV N L+ K +R+ +S RDP +R+SG AN+F+KNL + IDN L E F
Sbjct: 89 NNPLDAARALEVLNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETF 148
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
+FG I+SCKVA E G+SKG GFVQ+E EE+A AI++LNG + DK ++VG F++K +
Sbjct: 149 SSFGTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQE 208
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
R K+ N+F+KNL T+E L++ F ++G I S ++ +G SR FGF+NF+N
Sbjct: 209 RDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFEN 268
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
PD A RA++ +NG I K Y RAQKK+ERE L+ +FE+ K+ KY+G N+Y+KN
Sbjct: 269 PDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQILKDAADKYQGLNLYLKN 328
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+DD + D++L+ FS G ITS KVMRD+ G++KG GFV FS+ EEAS+A+ +G M+
Sbjct: 329 LDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMIS 388
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSS--ANVIPSGYPSL------YYTTPPG 412
KPLYVA AQRKEDR+A LQ Q++Q + + A +P YP + Y PP
Sbjct: 389 GKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPM-YPPMAPQQLFYGQAPPA 447
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLP 472
+ +PP+PG +Q VP RP P P + G P
Sbjct: 448 M---IPPQPGFGFQ----------QQLVPGMRPGG-----PHMPNYFVPVVQHQQGQQGP 489
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGR-IRELNKGSGVSLG---TFNSGGV 528
+ G + G+ P GR + E GV+ G ++ GG
Sbjct: 490 RPGIRRGAGAQGQQPVPPFQQQIVPRGRMYRYPTGRNMPEAPAMPGVAGGMMQAYDMGGF 549
Query: 529 MARKPDM--------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
R + L LA +PEQQ+ ILGE LYPLVE+ +P+ AK+TGMLLEMD
Sbjct: 550 PVRDAALSPAAQIGTLTSALANANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMDQ 609
Query: 581 SELLLLLESPESLAVKVEEAVQVL 604
+E+L LLESP++L KV EA+ VL
Sbjct: 610 TEVLHLLESPDALKSKVAEAMDVL 633
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 275/642 (42%), Positives = 375/642 (58%), Gaps = 55/642 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RV +D T RS Y VNF DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+FVKNL SID+ L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E A AIE +NG + D +++VGRF + DR L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL D+ +E L + F +FG S+ + DE+G S+GFGFV+F+ +DAR+A+E
Sbjct: 190 FTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQF----EEKRK------ERILKYKGSNVYVK 299
MNG + K +Y RAQKK ER+ L+H+F ++K K +R ++ KG N+YVK
Sbjct: 250 EMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVK 309
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+DD + DE L+ FS GTITSAKV E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 310 NLDDGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSPEEATKAVTEMNGKIV 368
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI--------PSGY-----PS-- 404
KPLYVA+AQRKE+RQAHL QY Q MA V+ PSGY P+
Sbjct: 369 ATKPLYVALAQRKEERQAHLSNQYMQRMASTSAGPNPVVSPFQPAQGPSGYCMTATPTQS 428
Query: 405 -LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGF------VPP--TRPAFQVSPLPVN 455
Y P Q P G + G RA+ F + P T P+F S
Sbjct: 429 RRAYCAPNQTTQQGPSARGSAH-------GTRAHPFQNMCSTIHPSHTMPSFSTS----G 477
Query: 456 PKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKG 515
P ++ R R +G H ++ +A +++ + Q KY R +
Sbjct: 478 PTTSQAIRHRTASTSTQMMGPHPAAAAAAAAPATRTIT------QYKYTAGVRNPPQHPN 531
Query: 516 SGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGML 575
+ + T S + K + MLA+ P+ QKQ+LGE L+ L++ P L KITGML
Sbjct: 532 TQPHVSTQRSAVPVQGKESLTASMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGML 591
Query: 576 LEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
LE+DN EL +LESPE L KV+EA+ VL+ +AK ++Q+A+
Sbjct: 592 LEIDNIELRHMLESPECLHTKVDEAIAVLQAHQAKETSQKAV 633
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L DVTE L EKFS G I S+ + RD S G+ VNF +DA
Sbjct: 6 PSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +Q R+ LR K N++VKN+D
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQ----RDPSLR------------KSGVGNIFVKNLDRS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ + L FS G I S KV+ DE G +KG+GFV F + EEA +A+ +G L+ +
Sbjct: 110 IDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + DRQA L
Sbjct: 169 FVGRFKSRRDRQAEL 183
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 275/667 (41%), Positives = 383/667 (57%), Gaps = 65/667 (9%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T TPASLY+GDL P VT+ LF+ F+ +AS+RVC+D+ T RS YGY+N+L DA
Sbjct: 60 TGATPASLYIGDLEPSVTEAMLFEVFNMVGPVASIRVCRDAVTRRSLGYGYINYLDIADA 119
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
RA++ N+T + G +RI WS RDP R++G N+F+KNL +ID+ L + F FG I
Sbjct: 120 ERALDTLNYTTVRGNPVRIMWSNRDPALRRAGTGNIFIKNLHTTIDHKALHDTFSAFGKI 179
Query: 127 ISCKVATSEDG-KSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VL 183
+SCK+A DG +S GHGFV +ET E A AI+++NG + D+++YVG I K +R +
Sbjct: 180 LSCKIAM--DGERSLGHGFVHYETMEMAENAIKHVNGMLLNDQQVYVGLHISKKERSSTI 237
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
+K+TN+++KN+D+ V ++ E F FG S ++ DE G S+ FGFVN++N +D
Sbjct: 238 EEKRSKFTNIYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNSKEFGFVNYENHED 297
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
ARRA+E M+ IG K +Y RAQKK ERE+ LR Q+E+ R+E++ KY+G N++VKNID+
Sbjct: 298 ARRAVEEMHEKEIGGKQIYVGRAQKKFEREEELRRQYEKIREEKLSKYQGVNLFVKNIDE 357
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ DE+L+ FS G ITS K+M DEK GI+KGFGFVCFS+P+EA+KAV + ML K
Sbjct: 358 SIDDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEATKAVTEMNNRMLANK 417
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPG 422
P+YVA+AQRKE R+ L Q Q + ++P GYP PPG VPP+
Sbjct: 418 PIYVALAQRKEVRRQQLAAQMQQRAM---RAHQQMMPPGYPGASIFYPPG---GVPPQAR 471
Query: 423 LMYQP------LGLRTGWRANGFVP----PTRPAFQVSP----------------LPVNP 456
+ P + R W G P P P Q+ P +P P
Sbjct: 472 GYFNPQQAQQQMMARPRWTGPGQPPHMQQPGFPPQQMPPHMQQPGFPPQQQPYAIVPATP 531
Query: 457 --KHNRQNR---GR--------MNGNMLPQVGAHYMQQSSQSAASS-----KDSSNQQKG 498
+ RQ R GR M M+ Q GA + Q A++ + + + +G
Sbjct: 532 GARPPRQTRPAGGRGQAIHHQGMQMPMIQQPGARPLAGYGQPGAAAGGVMPANVAARGRG 591
Query: 499 GQSKYVPNGR-------IRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQI 551
KY PN R + + + G A +P + LA+ +QQK+
Sbjct: 592 AGFKYAPNVRNAPATGGAADAAGSATATGGAATPAPAAAGRPVLNAATLASMPQDQQKRA 651
Query: 552 LGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK--LSEA 609
LGE L+PLV P L KITGMLLEMDN ELL LLESPE+LA KV EA+ L+ + EA
Sbjct: 652 LGEVLFPLVHAQSPQLAGKITGMLLEMDNGELLHLLESPETLASKVSEAMIALEEHMREA 711
Query: 610 KVSTQEA 616
+T++A
Sbjct: 712 AATTEDA 718
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/618 (43%), Positives = 370/618 (59%), Gaps = 47/618 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL PDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD++G SRGFGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE+
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+A L QY Q ++ + V+ S Y P V Q PP Y
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRALGGPVLGSFQQPASYFLP--AVPQ-PPAQAQYY---- 421
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA---------HYMQ 480
G PP +PA + + P P +R R++ L VG+ H +
Sbjct: 422 --------GSGPPIQPAPRWTAQPPRPSCDRLP-ARVSRRPLAPVGSSRQLSTHMPHLVP 472
Query: 481 QSSQSAASSKDSSNQQKGGQS---------KYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
+ + A + G S KY + + V V+ +
Sbjct: 473 HTQRVANIGTQTIGPSVTGCSTPSRPLLTHKYSTPAHCTDRVQEPAVC--------VLGQ 524
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
+P + + AAP E QKQ++GERL+PLV L KITGMLLE+DNSELLL+LESPE
Sbjct: 525 EPLTASTLAAAPLHE-QKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLESPE 583
Query: 592 SLAVKVEEAVQVLKLSEA 609
SL KVEEA+ VL+ +A
Sbjct: 584 SLNAKVEEALAVLQAHQA 601
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +I+ Q R + K N+++KN++D
Sbjct: 66 ERALDTMNFEVI------------KGQPIRIMWSQ----RDPGLRKSGVGNIFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G ++GFGFV F + E A A++T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + +R+ L
Sbjct: 169 FVGHFKSRREREVEL 183
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/616 (43%), Positives = 364/616 (59%), Gaps = 45/616 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL VTD +L++ FS+ + SVRVC+D ++ RS Y YVNF +P DA RA+E+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N L+GK +R+ +S RDP +R+SG AN+F+KNL ++ID+ L + F FGNI+SCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T E G+SKG GFVQ++ E+A +AI++LNG + DK +YVG F++K +R K+ N
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL T+E LV+ F +G I S +I +G SR FGF+NF +PDDA RA+E +N
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I K Y RAQKK+ERE L+ +FE+ K+ KY+G N+Y+KN+DD + D++L
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS G ITS K+MRD G++KG GFV FS+ EEAS+A+ +G M+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 399
Query: 373 EDRQAHLQLQYAQ--------HMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLM 424
EDR+ LQ Q++Q MA + P G Y PP I +PP+PG
Sbjct: 400 EDRKVMLQAQFSQVRPVPMTPSMAPRLPMYPPMAPLGQQLFYGQAPPAI---MPPQPGFG 456
Query: 425 YQPL---GLRTGW--RANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYM 479
+Q G+R G N FVP + Q P P R G G Q M
Sbjct: 457 FQQQLVPGMRPGGAHMPNYFVPVVQQG-QQGP---RPGIRRSGAGSAQGQQSAQPFQQQM 512
Query: 480 QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLG---TFNSGGVMARKPDM- 535
+G +Y P + ++ GV+ G +++ GG R +
Sbjct: 513 ---------------LPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMGGFPVRDAGLS 557
Query: 536 ------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
L LA +PEQQ+ ILGE LYPLVE + + AK+TGMLLEMD +E+L LLES
Sbjct: 558 PAPIGTLTSALANANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLES 617
Query: 590 PESLAVKVEEAVQVLK 605
PE+L KV EA+ VL+
Sbjct: 618 PEALKSKVAEAMDVLR 633
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/639 (41%), Positives = 363/639 (56%), Gaps = 52/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+ + LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP R+SGV N+F+KNL + IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 122 AIDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D +E L E F +GKI S + E+G S+GFGFV ++ + A A++
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQ 241
Query: 250 AMNGSVIG-SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G SK LY ARAQKKAER+Q L+ +FEE +K+R G N+YVKN+DD + DE
Sbjct: 242 ALNGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM DE+G +KGFGFVCF SP EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
AQRKE+R+AHL QY +HM G+ + P+ TT V +PP + P
Sbjct: 362 AQRKEERKAHLASQYMRHMTGMRMQQLGQMFQ--PN---TTGGFFVPTIPPSQRF-FGPQ 415
Query: 429 GLRTGWRANGFVPPTRPAFQVSPL----------------------------------PV 454
A + P RPA V + P
Sbjct: 416 MTTQMRNAPRWAPQVRPAATVQSVQAGAAAAAAGGFQGAAGAVPTQFRSAAAGARGAQPQ 475
Query: 455 NPKHNRQNRGRMNGNMLPQVGAHYM--QQSS-----QSAASSKDSSNQQKGGQSKYVPNG 507
+ N + GA + QQ++ Q A + QQ+ KY N
Sbjct: 476 QVQGTHAAAAAAAANNMRNTGARAITGQQTAAAPNLQIAGAQIAGGAQQRAPSYKYTSNM 535
Query: 508 RIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL 567
R + + G + K ++ +LA +P++QKQILGERLYP++E+ L
Sbjct: 536 RNPPVQQMQQAQPMPQQLQGKNSEK--LIASLLANANPQEQKQILGERLYPMIERMHAAL 593
Query: 568 VAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKL 606
KITGMLLE++NSELL +LE E+L KVEEAV VL++
Sbjct: 594 AGKITGMLLEIENSELLHMLEDKEALKAKVEEAVAVLQV 632
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 278/639 (43%), Positives = 379/639 (59%), Gaps = 61/639 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL ++TD +L+D F + + SVRVC+D +T RS YGYVN+ +P DA RA++
Sbjct: 18 ASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 77
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+ N T L+GK +RI +S RDP RKSG AN+F+KNL +SIDN L + F FGNI+SCK+
Sbjct: 78 LLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKI 137
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT G+SKG+GFVQF+ EESA AI+ LNG + DK++YVG+F++K +R K+
Sbjct: 138 ATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETALNKTKFN 197
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL TEE L F +FG I S+++ RD +G S+ FGFVNF+N DDA A+EA+
Sbjct: 198 NVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEAL 257
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG K Y +AQKK ERE L+ +FE+ KE + K++G N+Y+KN+DD + D++LK
Sbjct: 258 NGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLK 317
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS+ GTITS KVMRD GI++G GFV FS+ EEAS+A+ +G M+ KPLYVA+AQR
Sbjct: 318 ELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQR 377
Query: 372 KEDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPG 422
KE+R+A LQ Q++Q MA + P G P L Y PP I +PP+ G
Sbjct: 378 KEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAI---IPPQAG 434
Query: 423 LMYQPL---GLRTGW--RANGFVPPTRPAFQVSPL-------PVNPKHNRQNRGRMNGNM 470
YQ G+R G N FVP + Q PV + N+Q M M
Sbjct: 435 FGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGAGPV--QQNQQPVPLMQQQM 492
Query: 471 LPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMA 530
LP +GG+ P GR V + G M
Sbjct: 493 LP------------------------RGGRVYRYPPGR-----NMPDVPMPDAAIGQPMP 523
Query: 531 RKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
A P +QQ+ +LGE LYPLV++ + ++ AK+TGMLLEMD +E+L LLESP
Sbjct: 524 ISALASALANATP--DQQRTMLGESLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHLLESP 581
Query: 591 ESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
E+L KV EA+ VL+ V+ Q+A P A +++N
Sbjct: 582 EALKSKVAEAMDVLR----NVAQQQANSPTEQLASLSLN 616
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/639 (41%), Positives = 363/639 (56%), Gaps = 52/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+ + LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP R+SGV N+F+KNL + IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 122 AIDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D +E L E F +GKI S + E+G S+GFGFV ++ + A A++
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQ 241
Query: 250 AMNGSVIG-SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G SK LY ARAQKKAER+Q L+ +FEE +K+R G N+YVKN+DD + DE
Sbjct: 242 ALNGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM DE+G +KGFGFVCF SP EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
AQRKE+R+AHL QY +HM G+ + P+ TT V +PP + P
Sbjct: 362 AQRKEERKAHLASQYMRHMTGMRMQQLGQMFQ--PN---TTGGFFVPTIPPSQRF-FGPQ 415
Query: 429 GLRTGWRANGFVPPTRPAFQVSPL----------------------------------PV 454
A + P RPA V + P
Sbjct: 416 MTTQMRNAPRWAPQVRPAATVQSVQAGAAAAAAGGFQGAAGAVPTQFRSAAAGARGAQPQ 475
Query: 455 NPKHNRQNRGRMNGNMLPQVGAHYM--QQSS-----QSAASSKDSSNQQKGGQSKYVPNG 507
+ N + GA + QQ++ Q A + QQ+ KY N
Sbjct: 476 QVQGTHAAAAAAAANNMRNTGARAITGQQTAAAPNLQIAGAQIAGGAQQRAPSYKYTSNM 535
Query: 508 RIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL 567
R + + G + K ++ +LA +P++QKQILGERLYP++E+ L
Sbjct: 536 RNPPVQQMQQAQPMPQQLQGKNSEK--LIASLLANANPQEQKQILGERLYPMIERMHAAL 593
Query: 568 VAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKL 606
KITGMLLE++NSELL +LE E+L KVEEAV VL++
Sbjct: 594 AGKITGMLLEIENSELLHMLEDKEALKAKVEEAVAVLQV 632
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 272/658 (41%), Positives = 381/658 (57%), Gaps = 65/658 (9%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
+ V P TT SLYVGDL VTD +L++ FS+ + SVRVC+D + RS Y YVNF
Sbjct: 28 VGVAQPLPTT--SLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNF 85
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
+P DA RA+E+ N L+ K +R+ +S RDP +R+SG AN+F+KNL ++IDN L + F
Sbjct: 86 SNPMDAARALEMLNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTF 145
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
FG I+SCKVAT + G+SKG GFVQ+E EE A +A+++LNG + DK +YVG F++K +
Sbjct: 146 SAFGAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQE 205
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
R A++ N+F+KNL T+E LV+ FS++G I S ++ +G SR FGF+NF++
Sbjct: 206 RDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFES 265
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
PDDA RA+E +NG I K Y RAQKK+ERE L+ +FE+ K+ KY+G N+Y+KN
Sbjct: 266 PDDAVRAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKN 325
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+DD ++D++L+ FS G ITS KVMRD+ G++KG GFV FS+ EEAS+A+ +G ML
Sbjct: 326 LDDGISDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNGKMLS 385
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
KPLYVA AQRKE+R+A LQ Q++Q + PS P L P + Q
Sbjct: 386 GKPLYVAFAQRKEERKAMLQAQFSQM------RPVPITPSMTPRLPMYPPMAPLGQ---- 435
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQ 480
L Y GF FQ +P R +G +P +Q
Sbjct: 436 -QLFYGQAPPPMMPPQPGF------GFQQQLVPGM---------RPSGAHMPNYFVPVVQ 479
Query: 481 QSSQ--------SAASSKDSSNQQKGGQSKYVPNGRIR-----------ELNKGSGVSLG 521
Q Q S A S + Q + VP GR+ E+ +GV G
Sbjct: 480 QGQQGPRPGMRRSGAGSVQGQQSAQSYQQQMVPRGRVYRYPPGPGRNMPEVQPMAGVGAG 539
Query: 522 ----TFNSGGVMARKPDM--------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVA 569
++ GG R + L LA +P+QQ+ +LGE LYPLVE + + A
Sbjct: 540 GMIQPYDMGGFPVRDAGLSPAAPIGTLTSALANATPDQQRTLLGESLYPLVELLEHNQAA 599
Query: 570 KITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVA 627
K+TGMLLEMD +E+L LLESPE+L KV EA+ VL+ V+ Q+ +PN ++++A
Sbjct: 600 KVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLR----NVAQQQ--NPNAPTSQLA 651
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 267/618 (43%), Positives = 367/618 (59%), Gaps = 34/618 (5%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDLH DVT+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 12 SLYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN + + F FG+I+SCKV
Sbjct: 72 MNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGHILSCKVV 131
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAKY 190
T E+G +KG+GFV FET+E+AN AIE +NG + K++YVG FI + +R++ ++
Sbjct: 132 TDENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFIPRKERLMQMGDHQKQF 191
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN+F+KNL DV + L E ++G I S I D++ S+GFGF++F++ + A ++
Sbjct: 192 TNVFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFDDS-KSKGFGFISFEDHEAANDFVKT 250
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+NGS + + LYA RAQKKAER L+ +FE ++ER +Y+G N+Y+KN+DD++ DE L
Sbjct: 251 INGSEVNGRTLYAGRAQKKAERAAELKARFEALKQERSTRYQGVNLYIKNLDDEIDDERL 310
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ FS+ GTITSAKVM D+K +KGFGFVCFSSPEEA+KAV +G +L KPLYVA+AQ
Sbjct: 311 RKEFSRYGTITSAKVMSDDKANSKGFGFVCFSSPEEATKAVTEMNGRILVAKPLYVALAQ 370
Query: 371 RKEDRQAHLQLQYAQHMA-----GIEGSSANVIPSGYPSLYY-----------TTPPGIV 414
RK++R+A L QY Q +A G + S V P YP++ Y P G +
Sbjct: 371 RKDERRAQLASQYMQRVAPQVRVGQQASQQPVNPV-YPTMAYHYAAMPQAQRNIFPAGQL 429
Query: 415 SQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQV 474
+QV P QP RT + N P Q P Q R M +P
Sbjct: 430 AQV-RHPRWSQQPQQARTAAQPNFQTIPGAAGRQFG-APRAGTATGQVRQPMPATRVPVQ 487
Query: 475 GAHYMQQSSQSAASSKDSSNQQKGGQ----SKY----VPNGRIRELNKGSGVSLGTFNSG 526
A Q+ A ++ G Q +Y VP + V + +
Sbjct: 488 AAPAGQRVGGMGAPTQQQMRLGAGAQLSAAKQYPKFAVPRQGMPGQMPAENVPVQALHVP 547
Query: 527 GVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLL 586
G + + + MLA+ P++QKQ+LGERL+ ++ + DL KITGMLLE+DNSELL +
Sbjct: 548 G----QEPLTSAMLASALPQEQKQMLGERLFSIISETHKDLAGKITGMLLEIDNSELLHM 603
Query: 587 LESPESLAVKVEEAVQVL 604
LE E+L KVEEAVQVL
Sbjct: 604 LEVQEALEKKVEEAVQVL 621
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G I S +V RD I + G+ +V F P +A
Sbjct: 8 YPMNSLYVGDLHADVTEALLFEKFSTAGPILSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + L +P+ + +QR
Sbjct: 66 ERALDTMNFDTLKGRPIRIMWSQR 89
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 272/645 (42%), Positives = 364/645 (56%), Gaps = 65/645 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+ + LFD FS + S+RVC+D + RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L K +RI WS RDP R+SGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
AT E SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 122 ATDEKANSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D +E L E F +GKI S + E+G S+GFGFV F+ + A A++
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G K LY ARAQKKAER+Q L+ +FEE +K+R G N+YVKN+DD + DE
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHDSAFGVNLYVKNLDDSIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L FS GTITSAKVM DE+G +KGFGFVCF S EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLCKEFSPYGTITSAKVMTDEEGRSKGFGFVCFISANEATCAVTELNGRVVGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVI--PSGYPSLYYTTPPGIVSQVPPRPGLMYQ 426
AQRKE+R+AHL QY +HM G+ I P+ + T P P+ M
Sbjct: 362 AQRKEERKAHLASQYMRHMTGMRMQQLGQIFPPNAAGGFFVPTMPPNQRFFGPQ---MTT 418
Query: 427 PLGLRTGWRANGFVPPTRPAFQVSPLPVN----------------PKHNRQNRGRMNGNM 470
P+ W P RPA V + P R G
Sbjct: 419 PMRNTPRW-----ATPVRPAATVQSVQAGAAAAAAGGFQGAAGAVPTQFRSAAAGARGGQ 473
Query: 471 LPQV-GAHYM------------------QQS-----SQSAASSKDSSNQQKGGQSKYVPN 506
QV G H QQ+ Q A + QQ+ KY N
Sbjct: 474 SQQVQGTHAAAAAAANNMRNTGARAITGQQTVAAPNMQIAGAQIAGGAQQRASNYKYTSN 533
Query: 507 GR---IRELNKGSGV--SLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVE 561
R ++++ + + L NS ++A +LA P++QKQILGERLYP++E
Sbjct: 534 MRNPPVQQMPQAQPMPPQLQGKNSEKLIA-------SLLANAKPQEQKQILGERLYPMIE 586
Query: 562 KHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKL 606
+ P L KITGMLLE++NSELL ++E E+L KVEEAV VL++
Sbjct: 587 RMHPSLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQV 631
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/636 (42%), Positives = 360/636 (56%), Gaps = 48/636 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+ + LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP R+SGV N+F+KNL IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +IE +NG + K++YVG+FI K+ ++ L A
Sbjct: 122 ALDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN + +E L + F +GKI S + E+G S+GFGFV F+ + A A++
Sbjct: 182 FTNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G K LY ARAQKKAER+Q L+ +FEE +K+R G N+YVKN+DD + DE
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM DE+G +KGFGFVCF SP EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE-----------GSSANVIPSGYPSLYYTTP------- 410
AQRKE+R+AHL QY +HM G+ + +P+ P + +P
Sbjct: 362 AQRKEERKAHLASQYMRHMTGMRMQQLGQIFQPNTTGGFYVPTMAPGQRFFSPQIATQMR 421
Query: 411 --PGIVSQVPPRPGLMYQPLGLRTGWRANG-----------FVPPTRPAFQVSPLPVNPK 457
P SQV RP Q + A G F A P V
Sbjct: 422 NAPRWASQV--RPAATVQSVQAGAAAAAGGFQGAAGAVPAQFRQAAAGARGAQPPQVQGT 479
Query: 458 HNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGG------QSKYVPNGRIRE 511
H N NM Q S +A + + + Q GG KY N R
Sbjct: 480 HAAAAAAAAN-NMRNSGARAITGQQSVAAPNMQIAGAQIAGGAPQRAPSYKYTANMR--- 535
Query: 512 LNKGSGVSLGTFNSGGVMARKPD-MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
N + + P+ ++ +LA P++QKQILGERLYPL+E+ L K
Sbjct: 536 -NPPVQQMQQAQPMPQLQGKNPEKLIASLLANAKPQEQKQILGERLYPLIERMHATLAGK 594
Query: 571 ITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKL 606
ITGMLLE++NSELL +LE E+L KVEEAV VL++
Sbjct: 595 ITGMLLEIENSELLHMLEDQEALKAKVEEAVAVLQV 630
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/607 (43%), Positives = 367/607 (60%), Gaps = 34/607 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
SLYVGDL +VTD +L+D F+E + SVRVC+D+ T S YGYVN+ + DA +A++
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ L+GKM+RI++S RD AR+SGV NLFVKNL +S+DN L E F G I+SCKV
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT G+S+G+GFVQF+TE+SA AIE LNG + DK+I+VG F++K +R + K+T
Sbjct: 166 ATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFT 225
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL T++ L F ++G I+S ++ RD +G SR FGFVNF+NP+DA RA+EA+
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG K Y +AQKK+ERE L ++E+ + K+ G N+YVKN+DD VTDE+L+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F++ GTITS KVMRD G +KG GFV FS+ EAS+ +N +G M+ KPLYVA+AQR
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 372 KEDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPG 422
KE+R+A LQ Q++Q + G+ G + G P L Y PP I +P +PG
Sbjct: 406 KEERRAKLQAQFSQMRPAFIPGV-GPRMPIFTGGAPGLGQQIFYGQGPPPI---IPHQPG 461
Query: 423 LMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQS 482
YQP VP RPAF P+ + + GR +G+ M+
Sbjct: 462 FGYQPQ----------LVPGMRPAFFGGPMMQPGQQGPRPGGRRSGD-------GPMRHQ 504
Query: 483 SQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAA 542
Q +G +Y GR G + VM M G LA
Sbjct: 505 HQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSAGQLAT 564
Query: 543 ----PSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
+P QQ+ +LGE LYPLV++ + + AK+TGMLLEMD +E+L LLESPE+L KV
Sbjct: 565 SLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVS 624
Query: 599 EAVQVLK 605
EA+ VL+
Sbjct: 625 EALDVLR 631
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/607 (43%), Positives = 367/607 (60%), Gaps = 34/607 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
SLYVGDL +VTD +L+D F+E + SVRVC+D+ T S YGYVN+ + DA +A++
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ L+GKM+RI++S RD AR+SGV NLFVKNL +S+DN L E F G I+SCKV
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV 165
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT G+S+G+GFVQF+TE+SA AIE LNG + DK+I+VG F++K +R + K+T
Sbjct: 166 ATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFT 225
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL T++ L F ++G I+S ++ RD +G SR FGFVNF+NP+DA RA+EA+
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG K Y +AQKK+ERE L ++E+ + K+ G N+YVKN+DD VTDE+L+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F++ GTITS KVMRD G +KG GFV FS+ EAS+ +N +G M+ KPLYVA+AQR
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 372 KEDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPG 422
KE+R+A LQ Q++Q + G+ G + G P L Y PP I +P +PG
Sbjct: 406 KEERRAKLQAQFSQMRPAFIPGV-GPRMPIFTGGAPGLGQQIFYGQGPPPI---IPHQPG 461
Query: 423 LMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQS 482
YQP VP RPAF P+ + + GR +G+ M+
Sbjct: 462 FGYQPQ----------LVPGMRPAFFGGPMMQPGQQGPRPGGRRSGD-------GPMRHQ 504
Query: 483 SQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAA 542
Q +G +Y GR G + VM M G LA
Sbjct: 505 HQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSAGQLAT 564
Query: 543 ----PSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
+P QQ+ +LGE LYPLV++ + + AK+TGMLLEMD +E+L LLESPE+L KV
Sbjct: 565 SLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVS 624
Query: 599 EAVQVLK 605
EA+ VL+
Sbjct: 625 EALDVLR 631
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 276/642 (42%), Positives = 374/642 (58%), Gaps = 54/642 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RV +D T RS Y VNF DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+FVKNL SID+ L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E A AIE +NG + D +++VGRF + DR L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL D+ +E L + F +FG S+ + DE+G S+GFGFV+F+ +DAR+A+E
Sbjct: 190 FTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQF----EEKRK------ERILKYKGSNVYVK 299
MNG + K +Y RAQKK ER+ L+H+F ++K K +R ++ KG N+YVK
Sbjct: 250 EMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVK 309
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+DD + DE L+ FS GTITSAKV E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 310 NLDDGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSPEEATKAVTEMNGKIV 368
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI--------PSGY-----PS-- 404
KPLYVA+AQRKE+RQAHL QY Q MA V+ PSGY P+
Sbjct: 369 ATKPLYVALAQRKEERQAHLSNQYMQRMASTSAGPNPVVSPFQPAQGPSGYCMTATPTQS 428
Query: 405 -LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGF------VPP--TRPAFQVSPLPVN 455
Y P Q P G + G RA+ F + P T P+F S
Sbjct: 429 RRAYCAPNQTTQQGPSARGSAH-------GTRAHPFQNMSSTIHPSHTMPSFSTS----G 477
Query: 456 PKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKG 515
P ++ R R +G H ++ +AA + + Q KY R +
Sbjct: 478 PTTSQAIRHRTASTSTQMMGPHPAAAAAAAAAPATRTITQY-----KYTAGVRNPPQHPN 532
Query: 516 SGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGML 575
+ + T S + K + MLA+ P+ QKQ+LGE L+ L++ P L KITGML
Sbjct: 533 TQPHVSTQRSAVPVQGKESLTASMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGML 592
Query: 576 LEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
LE+DN EL +LESPE L KV+EA+ VL+ +AK ++Q+A+
Sbjct: 593 LEIDNIELRHMLESPECLHTKVDEAIAVLQAHQAKETSQKAV 634
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L DVTE L EKFS G I S+ + RD S G+ VNF +DA
Sbjct: 6 PSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +Q R+ LR K N++VKN+D
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQ----RDPSLR------------KSGVGNIFVKNLDRS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ + L FS G I S KV+ DE G +KG+GFV F + EEA +A+ +G L+ +
Sbjct: 110 IDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + DRQA L
Sbjct: 169 FVGRFKSRRDRQAEL 183
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 270/653 (41%), Positives = 371/653 (56%), Gaps = 58/653 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF+ FS ++ S+RVC+ T S Y YVNF + DA RA++
Sbjct: 2 ASLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G +RI WS RDP RKSGV N+F+KNL SIDN + + F FGNI+SCKV
Sbjct: 62 TMNFDILKGHPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
A E G SKG+GFV FET++SA +IE +NG + K+++VGRF+ ++DR L A
Sbjct: 122 AQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQRAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
YTN+++KN+D +V E+ L E F K+G I S + ++G+SRGFGFV F++P +A +A+
Sbjct: 182 YTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVT 241
Query: 250 AMNGSVI-GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
++G K Y RAQKK ER+Q L+ +FE+ + ERI +Y+G N+YVKN+DD + DE
Sbjct: 242 ELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTI SAKVM D+ G +KGFGFV FSSPEEA+KAV +G ++ KPLYV +
Sbjct: 302 RLRREFSAFGTIKSAKVMMDD-GRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTL 360
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGY-----PSLYYTTPPGIVSQVP 418
AQRK+DR+AHL QY+Q + S I +GY P Y P ++Q+
Sbjct: 361 AQRKKDRKAHLDSQYSQRNTNMRMQSIGPIYQPGASNGYFVPTIPQPQYFYGPTQMTQIR 420
Query: 419 PRPGLMYQPLGLRTGWRANGFVPPTRPAFQV--------SPLPVNPKHNRQNRGRMNGNM 470
+P +Q +R G P P +P+P + ++ N
Sbjct: 421 SQPRWAFQSQ-VRAGTPQT--AAPGYPNMATQHQNIGARAPVPAGQQAALARNVMVDTNA 477
Query: 471 LPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGR-------------------IRE 511
P A + SA S + G KY PN R + +
Sbjct: 478 RPISTAQQKMPGAVSAGSVHVPGARDTGSGYKYTPNMRNPLSQDQGIGQAQPGQAQGMGQ 537
Query: 512 LNKGSGVSLGTFNSG---GVMARKPD-----------MLNGMLAAPSPEQQKQILGERLY 557
G +G SG G+ +PD + MLA PE QKQ+LGERL+
Sbjct: 538 SQPGQAQGMGQAQSGQAQGMEQVQPDKAAVHVYGQEPLTATMLATAKPEDQKQMLGERLF 597
Query: 558 PLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
PL+E+ P+L KITGMLLE+DNS+LL +LE ESL +VE+AV +L+ +A+
Sbjct: 598 PLIERMYPELTGKITGMLLEIDNSDLLHMLEHHESLKNQVEKAVAMLQAHQAQ 650
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/644 (40%), Positives = 372/644 (57%), Gaps = 72/644 (11%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P S+YVGDL +V++ +L++ FS+ + S+RVC+D T RS Y YVN+ S D
Sbjct: 18 PNQFVSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQD 77
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA+E+ N T ++GK +RI +S RDP RKSG AN+F+KNL ++IDN L + F FG
Sbjct: 78 ATRALELLNFTPVNGKPIRIMFSHRDPSLRKSGAANIFIKNLDKAIDNKALHDTFSAFGG 137
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCKVAT G+SKG+GFVQFE EESA +AIE +NG + DK+++VG F+++ +R L
Sbjct: 138 ILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGPFVRRQERDLSG 197
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
+K+ N+++KNL + T++ L + F +G I+S ++ RD G S+ FGFVNF+ DDA
Sbjct: 198 GVSKFNNVYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELADDAA 257
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+EA+NG K Y RAQKK+ERE LR +FE++RK RI KY+G N+Y+KN+DD V
Sbjct: 258 KAVEALNGKKQDEKEWYVGRAQKKSEREAELRAKFEQERKSRIEKYQGVNLYLKNLDDAV 317
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE+L+ F++ GTITS KVM+D +G ++G GFV FS+PEEA++AV + M+ KPLY
Sbjct: 318 DDEKLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLY 377
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY 425
VA+AQRKE+R+ LQ +AQ + + +P +P PG+ Q+P
Sbjct: 378 VALAQRKEERRVRLQAAFAQMRTPVGPTVPTSLPMYHPG------PGLGPQMP------- 424
Query: 426 QPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ-VGAHYMQQSSQ 484
G +G +P AF P + P G +P +G + S
Sbjct: 425 -----YYGQHPSGPIPLQPAAFGYPPQIMRP----------GGAQIPNYIGYPNVSLSQG 469
Query: 485 SAASSKDSSNQ---------------QKGGQS--KYVPNGRIRELNKGSGVSLGTFNSGG 527
Q+GG +Y PN R N G + G
Sbjct: 470 QQGQRAGGRRGGAPQQQQQQSQQQMIQRGGNRNFRYTPNVR----NASDGTAPPPQGMMG 525
Query: 528 VMARKPDMLNGMLAA----------------------PSPEQQKQILGERLYPLVEKHKP 565
VM P + GM AA P+QQ+ +LGE+LYPLV++ +
Sbjct: 526 VMLPVPLEIGGMPAANVDSGVPQQPLPISALASALASAPPDQQRAMLGEQLYPLVDQLEH 585
Query: 566 DLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEA 609
+ K+TGMLLEMD +E+L L+ESPE+L KV EA++VL++++A
Sbjct: 586 EFAGKVTGMLLEMDQTEVLHLIESPEALKAKVNEAMEVLRMAQA 629
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/635 (41%), Positives = 373/635 (58%), Gaps = 52/635 (8%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+ D RA+E
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N++ + + RI WS RDP RK+G N+F+KNL E IDN L + F FGN++SCKVAT
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT 165
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYT 191
E G+SKG+GFV +ET E+A AI+ +NG + DK++YVG I + +R L A++T
Sbjct: 166 DEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQFT 225
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KNLD+ VT++ E F K+G + S ++ DE G S+GFGFVN+++ ++A+ A++A+
Sbjct: 226 NLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDAL 285
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ + I K L+ +RAQKKAERE+ LR +E+ + E++ KY+G N+Y+KN++DDV DE+L+
Sbjct: 286 HDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLR 345
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
A F GTITS KVMRD+K +KGFGFVCFSSP+EA+KAV + M+ KPLYV++AQR
Sbjct: 346 AEFEPFGTITSCKVMRDDKSTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQR 405
Query: 372 KEDRQAHLQLQYAQ-HMAGIEGSSANVIPSGYPS--LYYTTPPGIV-------------S 415
+E R+ L+ Q AQ + ++ ++A IP GY + +YY PG
Sbjct: 406 REVRRQQLESQIAQRNQIRMQQAAAAGIPGGYINGPMYYPPGPGSFPPQGRNMMGYGQPG 465
Query: 416 QVPPRP------------------GLMYQPLGLRTGWRANGFVPPTRPAFQVSP--LPVN 455
+PPRP G Q G G+ G RP P P N
Sbjct: 466 MLPPRPRYPAGNGQVPGGMPIPPYGQPPQSYGGMPGYPRGGA---PRPPVARGPGSSPTN 522
Query: 456 PKHNRQNRGRMNGNMLPQV-GAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNG-RIRELN 513
P N N P V GA + Q + P G ++
Sbjct: 523 P-----NAPIPRANAPPSVNGAAARGGAPQGSVPPNRPPPAGAPAPGNRPPQGYKLNPQT 577
Query: 514 KGSGVS-LGTFNSGGVMARK---PDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVA 569
+ +G +G + A + P + G LA SP +QKQ+LGE +Y + +P+L
Sbjct: 578 RNAGAPPVGQTSPAQAPATQSEVPTLTAGALANASPMEQKQMLGEVIYMKIAPAQPELAG 637
Query: 570 KITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
KITGMLLEMDN+ELL LLESP+S+A KV EA+ VL
Sbjct: 638 KITGMLLEMDNAELLHLLESPDSMAGKVNEALAVL 672
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 262/619 (42%), Positives = 380/619 (61%), Gaps = 37/619 (5%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL P+V++ +L++ F++ + S+RVC+D T RS Y YVN+ S DA RA+E+
Sbjct: 29 SLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALEL 88
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N + L+G +RI +S RDP RKSG AN+F+KNL ++IDN L + F FG I+SCKVA
Sbjct: 89 LNFSVLNGNPIRIMFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILSCKVA 148
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQFE EESA AIE +NG + DK+++VG F+++ +R +K+ N
Sbjct: 149 VDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVSKFNN 208
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL + TE+ L F +G I+S ++ RD +G S+ FGFVNF++PD+A +A+EA+N
Sbjct: 209 VYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVEALN 268
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y RAQKK+ERE LR +FE++RKERI KY+G N+Y+KN+DD V DE+L+
Sbjct: 269 GKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKLRE 328
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F+ GTITS KVMRD +G ++G GFV FSSPEEA++AV +G M+ KPLYVA+AQRK
Sbjct: 329 LFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVALAQRK 388
Query: 373 EDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVP--------PRP--- 421
E+R+A LQ +AQ + S + +P+ P Y PG+ Q+P P P
Sbjct: 389 EERRARLQAAFAQ----MRTSVSPAVPTSLP--MYHPGPGMSPQMPYYGQHPSGPIPLQP 442
Query: 422 -GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNR---------QNRGRMNGNML 471
YQP +R G G P + PL + R Q + + +
Sbjct: 443 AAFGYQPQIIRPG----GAQFPNYIGYANVPLRQGQQGQRAGGRRGGAPQQQQQQLQQQM 498
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
Q G + + + +A + D++ +G VP L G G+ + +SG
Sbjct: 499 IQRGGNRNLRYTPNARNMPDTAVPPQGIMGAMVP----VPLEIG-GLPVANVDSGVPQQP 553
Query: 532 KPDMLNGMLAAPSPEQQKQ-ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
P A +P +Q++ +LGE+LYPLV++ + D K+TGMLLEMD +E+L L+ESP
Sbjct: 554 LPISALASALASAPPEQQRAMLGEQLYPLVDQLEHDYAGKVTGMLLEMDQTEVLHLIESP 613
Query: 591 ESLAVKVEEAVQVLKLSEA 609
E+L KV EA+ VL++++A
Sbjct: 614 EALRAKVAEAMDVLRMAQA 632
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 269/646 (41%), Positives = 365/646 (56%), Gaps = 61/646 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+ + LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP R+SGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
AT E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 122 ATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN + +E L E F +GKI S + E+G S+GFGFV ++ + A A++
Sbjct: 182 FTNVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQ 241
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G K LY ARAQKKAER+Q L+ +FEE +K+R G N+YVKN+DD + DE
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM D++G +KGFGFVCF SP EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLRKEFSLYGTITSAKVMTDDEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE-----------GSSANVIPSGYPSLYYTTP------- 410
AQRKE+R+AHL QY +HM G+ +S +P+ PS + P
Sbjct: 362 AQRKEERKAHLASQYMRHMTGMRMQQLGQLFQPNTASGFFVPTMAPSQRFFGPQMTTQMR 421
Query: 411 --PGIVSQVPPRPGLMYQPL---------------------GLRTGWRANGFVPPTRPAF 447
P Q+ RP Q + + T +R +G A
Sbjct: 422 STPRWAQQM--RPATAVQSVQAGAASAAASAAAGGFQGAAGAVPTQFRQSG-----AGAR 474
Query: 448 QVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYM--QQS-----SQSAASSKDSSNQQKGGQ 500
P V H NM GA + QQS Q A + QQ+
Sbjct: 475 GAQPQQVQGTHAAAAAAAAANNMRSS-GARAITGQQSVAAPNMQIAGAQIAGGAQQRAAS 533
Query: 501 SKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLV 560
KY N R + + G K ++ +LA P++ KQILGERLYP++
Sbjct: 534 YKYTANMRNPPVQQMQQAQPMPQQLQGKNQEK--LIASLLANAKPQEAKQILGERLYPMI 591
Query: 561 EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKL 606
E+ L KITGMLLE++NSELL +LE E+L KVEEAV VL++
Sbjct: 592 ERMHAALAGKITGMLLEIENSELLHMLEDQEALKAKVEEAVAVLQV 637
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 259/623 (41%), Positives = 374/623 (60%), Gaps = 36/623 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 SSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SID+ L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREAELGAQALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL D+ E+ L + F FG + S+ + RD +G SRGFGFVNF+ ++A++A++
Sbjct: 190 FTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + + LY RAQK+AER+ L+ +FE+ +++R +Y+G N+YVKN+DD ++DE+
Sbjct: 250 HMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRYRGVNLYVKNLDDSISDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRTVFSPYGVITSAKVM-TEGDHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYY----TTPP---------GIVS 415
QRKE+R+A L QY + ++ ++ S V+ S P+ Y+ PP G V+
Sbjct: 369 QRKEERKAILTNQYMKRLSTVQALSRPVLGSFQQPNSYFLPTGAQPPAQAPCCGSSGSVA 428
Query: 416 QVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVG 475
V P P W A P T + LP P+ N + R +P +
Sbjct: 429 PVQPAP-----------RWTAQPQRPSTASVVRPPGLPRRPQANVSSV-RQASTQVPHLA 476
Query: 476 AHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM 535
H + ++ + ++ +G +P ++ GV + G + +
Sbjct: 477 PHTKKVANIGTQTMGRAACSTEG--PSLLPCTCSSTVHIAHGVPEPAVHVPG----QEPL 530
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
MLAA +QKQ++GERLY L+ + L KITGMLLE+DNS+LLL+LESPESL
Sbjct: 531 TASMLAAAPLHEQKQMIGERLYHLIPEVYASLAGKITGMLLEIDNSDLLLMLESPESLQA 590
Query: 596 KVEEAVQVLKLSEAKVSTQEAIH 618
K+EEAV VL+ +A + +H
Sbjct: 591 KIEEAVAVLQAHQAMEQPKAYMH 613
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y S++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ +P+ + +QR
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQR 89
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 268/625 (42%), Positives = 372/625 (59%), Gaps = 45/625 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T S Y YVNF DA R +E
Sbjct: 2 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+FVKNL +SIDN L + F FGNI+SCKV
Sbjct: 62 TMNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
+ E+G SKG+GFV FET+ESA AIE +NG + +++VG F + +R L + A +
Sbjct: 122 VSDENG-SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKERELELGARARE 180
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ L E F +FG+ S+ + DE G S+GFGFV++ +DA+RA++
Sbjct: 181 FTNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVD 240
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + + +Y RAQKK ER+ L+ FE+ +++R+ +Y+G N+YVKN+DD + DE
Sbjct: 241 EMNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNLDDTIDDER 300
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G ++GFGFVCFS+P+EA+KAV +G ++ KPLYVA+A
Sbjct: 301 LRTEFSPFGTITSAKVMM-EGGHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYVALA 359
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGYPSLYYTTPPGIVSQVPPRPGLM 424
QRKE+RQAHL QY + MA I+ + V+ P+ TT P ++
Sbjct: 360 QRKEERQAHLTNQYMRRMANIQTFANPVLNPYHQPTSSSRYIMTTVPSSQTRT------S 413
Query: 425 YQPLGLRTGWRANGFVPPTRPAFQVSPLP-----VNPKHNRQ--NRGRMNGNMLPQVGAH 477
Y P G R + P P ++ P P V PK R N R +P++
Sbjct: 414 YYPYGQVPQLRTSSHWGP--PGGRLPPFPTVSGVVRPKTPRPPFNPMRSASGPVPRM--- 468
Query: 478 YMQQSSQSAASSKDSSNQQKG-GQSKYVPNGR-IRELNKGSGVS---------LGTFNSG 526
++Q + NQ G + ++PN R +++ +GV
Sbjct: 469 ---MTTQRVV---NPPNQVFGPPRPPFIPNLRAVQQYKYAAGVRNPKRFELPMQINIPQP 522
Query: 527 GVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
V A ++L MLA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL
Sbjct: 523 AVHAAAQEVLTASMLADALPQEQKQMLGERLFPLIQVMHPALAGKITGMLLEIDNSELLH 582
Query: 586 LLESPESLAVKVEEAVQVLKLSEAK 610
+LESPESL KV+EAV VL+ + K
Sbjct: 583 MLESPESLRSKVDEAVAVLQAHQVK 607
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 260/620 (41%), Positives = 376/620 (60%), Gaps = 40/620 (6%)
Query: 6 PTATT-------PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYV 58
PT+TT ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YV
Sbjct: 44 PTSTTGQQQPGNSASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYV 103
Query: 59 NFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQE 118
N+L+ D RA+E N++ + + RI WS RDP RK+G N+F+KNL + IDN L +
Sbjct: 104 NYLNAADGERALEHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHD 163
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178
F FGNI+SCKVAT E+G S+G FV +ET E+A+AAI+++NG + DK++YVG I K
Sbjct: 164 TFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISK 223
Query: 179 SDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
+R + AK+TN+F+KNL+ + T++ L + F FG+I S ++ E+G S+GF FV
Sbjct: 224 KERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFV 283
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
N+ D A++A++ +N I K LY RAQK+AER++ LR EE+R E K G N+
Sbjct: 284 NYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNL 343
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
YVKNIDD+ D+ L++ F GTITSAKVMRD+KG ++GFGFVCFS P+EA++AV +G
Sbjct: 344 YVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNG 403
Query: 357 YMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAG-IEGSSANVI--PSGY---PSLYYTTP 410
M+ KPLYV++AQ+KE R+ L+ Q Q A ++ ++AN + P GY P Y
Sbjct: 404 KMIGTKPLYVSLAQKKEVRRQALESQMQQRNAQRLQYAAANGLGGPQGYMQAPMYYPPMG 463
Query: 411 PGIVSQVPPRPGLMYQP-----LGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGR 465
P +P R G++ P +G R G + P +P V P+ P G
Sbjct: 464 PYGGPMMPVRGGVVGYPGAPPMMGARPGR----YPPSGQPGAPV-PMGYMPP------GG 512
Query: 466 MNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNS 525
GN P + + ++ + + + N G + +P G++ +G G
Sbjct: 513 AGGN-YPGMPNYPVRPAGNARPPTAARPNGSPSGAQQGLPRGQVPARPQGDGAQ------ 565
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
A +P + LA SP +QKQ+LGE +YPL+ + +P+L KITGMLLEMDN+ELL
Sbjct: 566 --AAAGQPRLTAQALARASPGEQKQMLGEAIYPLIHESQPELAGKITGMLLEMDNAELLH 623
Query: 586 LLESPESLAVKVEEAVQVLK 605
L+ESP +L KV+EA++VL+
Sbjct: 624 LVESPAALTEKVDEALRVLE 643
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 274/640 (42%), Positives = 387/640 (60%), Gaps = 50/640 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
SLYVGDL +VTD +L+D F+E + SVRVC+D+ T S YGYVN+ + DA +A++
Sbjct: 41 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQ 100
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ L+GKM+RI++S RD AR+SGV NLFVKNL +S+DN L E F G I+SCKV
Sbjct: 101 KLNYSTLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETFSGCGTIVSCKV 160
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A G+S+G+GFVQF+TE+SA AIE LNG + DK+I+VG F++K +R + K+T
Sbjct: 161 AADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFT 220
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL T++ L F ++G I+S ++ RD +G SR FGFVNF+NP+DA RA+EA+
Sbjct: 221 NVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 280
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG K Y +AQKK+ERE L ++E+ + K+ G N+YVKN+DD VTDE+L+
Sbjct: 281 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKLR 340
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F++ GTITS KVMRD G +KG GFV FS+ EAS+ +N +G M+ KPLYVA+AQR
Sbjct: 341 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 400
Query: 372 KEDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPG 422
KE+R+A LQ Q++Q + G+ G + P G P L Y P I +P +PG
Sbjct: 401 KEERRAKLQAQFSQMRPAFIPGV-GPRMPIFPGGAPGLGQQIFYGQGSPPI---IPHQPG 456
Query: 423 LMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQS 482
YQP VP RP+F P+ + + GR +G+ M+
Sbjct: 457 FGYQPQ----------LVPGLRPSF--FPMMQPGQQGPRPGGRRSGD-------GPMRHQ 497
Query: 483 SQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLG-----TFNSGGVMARKP---D 534
Q +G +Y P GR N G LG ++ G+ +P
Sbjct: 498 HQQPMPYMQPQMMPRGRGYRYPPGGR----NMPDGPMLGGMVPVAYDMNGMPIAQPMSAG 553
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
L LA +P QQ+ +LGE LYPLV++ + + AK+TGMLLEMD +E+L LLESPE+L
Sbjct: 554 QLATSLANATPAQQRTLLGESLYPLVDQIEHENAAKVTGMLLEMDQTEVLHLLESPEALN 613
Query: 595 VKVEEAVQVLKLSEAKVSTQ-----EAIHPNYLSAEVAVN 629
KV EA+ VL+ + + STQ ++ P+ L A +++N
Sbjct: 614 AKVSEALDVLR-NVNQPSTQVSEGNKSGSPSDLMASLSIN 652
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 275/667 (41%), Positives = 382/667 (57%), Gaps = 93/667 (13%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P TT SLYVGDL +VTD +L++ FS+ + SVRVC+D + RS Y YVN+ +P D
Sbjct: 118 PLPTT--SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMD 175
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA+E N L+ K +R+ +S RDP +R+SG AN+F+KNL ++IDN L + F FG
Sbjct: 176 AARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGA 235
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCKVA + G+SKG GFVQ+E EESA +A+++LNG + DK +YVG F++K +R S
Sbjct: 236 ILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSS 295
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
AK+ N+F+KNL T+E L++ FS++G I S ++ +G SR FGFVNF++PDDA
Sbjct: 296 DKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAA 355
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
RA+E +NG I K Y RAQKK+ERE L+ +FE+ K+ KY+G N+Y+KN+DD +
Sbjct: 356 RAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 415
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
TD++L+ FS G ITS K+MRD+ G++KG GFV FS+ EEAS+A+ +G M+ KPLY
Sbjct: 416 TDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLY 475
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY 425
VA AQRKE+R+A LQ Q++Q + PS P L PP P L
Sbjct: 476 VAFAQRKEERKAMLQAQFSQM------RPVPMTPSMTPRL---------PMYPPMPTLGQ 520
Query: 426 QPL-----------------------GLRTGWRA---NGFVPPTRPAFQVSPLPVNPKHN 459
Q G+R G A N FVP +P
Sbjct: 521 QLFYGQAPPAMMPPQPGYGFQQQLVPGMRPGGGAHMPNYFVPVVQP-------------- 566
Query: 460 RQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQ------KGGQSKYVPNGR-IREL 512
G P+ G M++S +A + + +G +Y P R + E+
Sbjct: 567 --------GQQGPRPG---MRRSGPGSAQGQQTPQPFQQQMVPRGRVYRYPPGPRHMAEV 615
Query: 513 NKGSGVSLGTF-----------NSGGVMARKP-DMLNGMLAAPSPEQQKQILGERLYPLV 560
+ GV +G GV P L LA +PEQQ+ ILGE LYPLV
Sbjct: 616 QQMPGVGVGGMVQPYDMGSFPVRDAGVSPAPPIGTLTSALANATPEQQRTILGESLYPLV 675
Query: 561 EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPN 620
EK + AK+TGMLLEMD +E+L LLESPE+L KV EA+ VL+ V+ Q+ +PN
Sbjct: 676 EKLEHQQAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLR----NVAQQQ--NPN 729
Query: 621 YLSAEVA 627
++++A
Sbjct: 730 APTSQLA 736
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 271/614 (44%), Positives = 381/614 (62%), Gaps = 37/614 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSG+ N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G S+G GFV FET E+AN AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQEREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN + D+ +E L E FS+FGK S+ + DENG SRGFGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVS 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG +G +VLY RAQK++ER+ L+ +FE+ ++ER+ +Y+G N+YVKN+DD + DE+
Sbjct: 250 NMNGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNLYVKNLDDIIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQP-- 427
QRKE+R+A L QY Q ++ + G + + P P+ Y+ P I PP Y P
Sbjct: 369 QRKEERKAILTSQYMQRLSTLRGLNGPLFPQ--PTNYFL--PAIPQ--PPARATFYSPST 422
Query: 428 -LGLRTGWRANGFVP------PTRPAFQVSPLPVNPKHNRQNRG--RMNGNMLPQVGAHY 478
+R R + P PT V LP P+ N R +P+ G H
Sbjct: 423 VAPVRPAPRWTSYSPRSSCESPT--XLIVLLLPATPRRTVSNISTVRQASTQVPRAGPH- 479
Query: 479 MQQ----SSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD 534
MQ+ +Q+ + S + Q KY + +R ++ ++ + ++P
Sbjct: 480 MQRVANIGTQTMGTGCPGSPGRAVAQYKY--SSAVRNTHQVMEPAV------HIQGQEP- 530
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
+ MLA+ ++QKQ+LG+RLYPL+ L KITGMLLE+DNSELLLLLESPESL
Sbjct: 531 LTASMLASAPVQEQKQMLGDRLYPLIYGIHAQLAGKITGMLLEIDNSELLLLLESPESLH 590
Query: 595 VKVEEAVQVLKLSE 608
K+EEA+ L+ E
Sbjct: 591 SKIEEAIAALQAQE 604
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 108/195 (55%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI + + +Q R+ LR K N+++KN+DD
Sbjct: 66 ERALDTMNFEVIKGRPIRIMWSQ----RDPGLR------------KSGIGNIFIKNLDDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G ++GFGFV F + E A++A+NT +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A L
Sbjct: 169 FVGHFKSRQEREAEL 183
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 266/622 (42%), Positives = 366/622 (58%), Gaps = 35/622 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A
Sbjct: 131 VCDDHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELGARATA 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL V E L + FS+FGK+ S+ + RD++G SRGFGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVM 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE +++R+ + +G N+YVKN+DD + DE+
Sbjct: 250 DMNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGYPSLYYTTPPGIVSQVPPRPGLM 424
QRKE+R+A L QY Q ++ + + P+ Y PP P
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRALGGPFLGSFQQPTSYFLPAMAQPPAQAEHYGSSPSRQ 428
Query: 425 YQPLGLRTGWRANGFVPPTRP--AFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQS 482
P W P RP A V P P +R+ ++ Y+
Sbjct: 429 PAPR-----WTTQ----PPRPSSASMVRP----PAMSRRPLAQVCSVRQTSTQVPYLVPH 475
Query: 483 SQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG-----GVMARKPDMLN 537
+Q A+ + GG P GR ++ L T N+ V P+ L
Sbjct: 476 TQRVANI-GTQTPGPGGAGCSTP-GRSLPTHR---YFLATPNTHEVQEPAVRILGPEPLT 530
Query: 538 G-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
MLAA QQKQ++GERLYPL+ + L KITGMLLE+DNSELLL+LESPESL K
Sbjct: 531 ASMLAAAPLHQQKQMIGERLYPLIYEVHTQLAGKITGMLLEIDNSELLLMLESPESLNAK 590
Query: 597 VEEAVQVLKLSEAKVSTQEAIH 618
VEEA+ VL+ +A T+ +H
Sbjct: 591 VEEALAVLQAHQAMEQTKVNVH 612
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 110/210 (52%), Gaps = 25/210 (11%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
AT ++YV +L V + L D FS+F + SV+V +D +G S +G+VNF +A
Sbjct: 187 ATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQ 245
Query: 68 RAIEVKNHTQLHGKML-----------------RISWSCRDPDARKSGVANLFVKNLIES 110
+A+ N Q+ G++L R + +D R GV NL+VKNL +S
Sbjct: 246 KAVMDMNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGV-NLYVKNLDDS 304
Query: 111 IDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
ID+ +L++ F +G I S KV T E G SKG GFV F + E A A+ +NG +G K +
Sbjct: 305 IDDEKLRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPL 363
Query: 171 YVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
YV +K +R A TN +M+ L +
Sbjct: 364 YVALAQRKEER-----KAILTNQYMQRLST 388
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ +P+ + +QR
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQR 89
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 270/616 (43%), Positives = 375/616 (60%), Gaps = 26/616 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D + RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G S+GHGFV FET+E+A AI+ +NG + D++++VG F + +R + A +
Sbjct: 131 VCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ + L E FS+FGK S+ + D G S+GFGFVNF+ ++A++A+
Sbjct: 190 FTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVA 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I +++Y RAQK+ ER+ L+ +FE+ ++ER+ +Y+G N+YVKN+DD + DE
Sbjct: 250 DMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQV-----PPRPGLM 424
QRKE+R+A L QY Q +A + + S P Y PP Q P P +
Sbjct: 369 QRKEERKAILTNQYMQRLATMRALPGPFLGSFQPPPGYFLPPIPQPQTRAAFYSPSPVVP 428
Query: 425 YQPLGLRTGWRANGFVPPTRPAFQVSPL---PVNPKHNRQNRGRMN--GNMLPQV--GAH 477
+P T W A PP PA +P+ V P+ N M +P+V A
Sbjct: 429 VRPA---TRWSAQPTRPPPYPA--ATPILRAAVQPRRLLSNISTMRQASTQVPRVPPQAQ 483
Query: 478 YMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG----GVMARKP 533
+ S++ S+ G +Y + +R + V G G + ++P
Sbjct: 484 RVANIGTQTISARVPSSPTLRGAPQYKYSLAVRNIQPMGSVPPGAQQVGEPAVHIQGQEP 543
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
+ MLAA P++QKQ++GERLYPL+ L KITGMLLE+DNSELLLLLESPESL
Sbjct: 544 -LTASMLAAAPPQEQKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESPESL 602
Query: 594 AVKVEEAVQVLKLSEA 609
K+EEAV VL+ +A
Sbjct: 603 HSKIEEAVAVLQAHQA 618
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 106/195 (54%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD + S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI + + +Q R+ LR K NV++KN+DD
Sbjct: 66 ERALDTMNFEVIKGRPVRIMWSQ----RDPGLR------------KSGVGNVFIKNLDDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G ++G GFV F + E A++A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A
Sbjct: 169 FVGHFKSRKEREAEF 183
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 259/620 (41%), Positives = 376/620 (60%), Gaps = 40/620 (6%)
Query: 6 PTATT-------PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYV 58
PT+TT ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YV
Sbjct: 44 PTSTTGQQQPGNSASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYV 103
Query: 59 NFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQE 118
N+L+ D RA+E N++ + + RI WS RDP RK+G N+F+KNL + IDN L +
Sbjct: 104 NYLNAADGERALEHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHD 163
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178
F FGNI+SCKVAT E+G S+G FV +ET E+A+AAI+++NG + DK++YVG I K
Sbjct: 164 TFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISK 223
Query: 179 SDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
+R + AK+TN+F+KNL+ + T++ L + F FG+I S ++ E+G S+GF FV
Sbjct: 224 KERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFV 283
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
N+ D A++A++ +N I K LY RAQK+AER++ LR EE+R E K G N+
Sbjct: 284 NYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNL 343
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
YVKNIDD+ D+ L++ F GTITSAKVMRD+KG ++GFGFVCFS P+EA++AV +G
Sbjct: 344 YVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNG 403
Query: 357 YMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAG-IEGSSANVI--PSGY---PSLYYTTP 410
M+ KPLYV++AQ+KE R+ L+ Q Q A ++ ++AN + P GY P Y
Sbjct: 404 KMIGTKPLYVSLAQKKEVRRQALESQMQQRNAQRLQYAAANGLGGPQGYMQAPMYYPPMG 463
Query: 411 PGIVSQVPPRPGLMYQP-----LGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGR 465
P +P R G++ P +G R G + P +P V P+ P G
Sbjct: 464 PYGGPMMPVRGGVVGYPGAPPMMGARPGR----YPPSGQPGAPV-PMGYMPP------GG 512
Query: 466 MNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNS 525
GN P + + ++ + + + N G + +P G++ +G G
Sbjct: 513 AGGN-YPGMPNYPVRPAGNARPPTAARPNGSPSGAQQGLPRGQVPARPQGDGAQ------ 565
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
A +P + LA SP +Q+Q+LGE +YPL+ + +P+L KITGMLLEMDN+ELL
Sbjct: 566 --AAAGQPRLTAQALARASPGEQRQMLGEAIYPLIHESQPELAGKITGMLLEMDNAELLH 623
Query: 586 LLESPESLAVKVEEAVQVLK 605
L+ESP +L KV+EA++VL+
Sbjct: 624 LVESPAALTEKVDEALRVLE 643
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 266/642 (41%), Positives = 376/642 (58%), Gaps = 53/642 (8%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
+T ASLYVGDLH +VT+ L++ FS + S+RVC+D+ T RS Y YVNF DA R
Sbjct: 107 STMASLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAER 166
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
+ N + GK +R+ WS RDP RKSG+ N+FVKNL +SI+N L + F +FGNI+S
Sbjct: 167 VMTDMNLYIIKGKPVRLMWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDAFSSFGNILS 226
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSP 186
CKV T ++G SKG+GFV FE ESA AI+ +NG + D +I+VG F + DR L +
Sbjct: 227 CKVITDDNG-SKGYGFVHFEHRESAERAIQKMNGILLNDLKIFVGHFKSRKDRESELGAQ 285
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
++TN+++KN D+ E+ L + F KFG S+ + RD+ G S+GFGFVNF +DA+
Sbjct: 286 TREFTNVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQN 345
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
A++ MNG + + +YA RAQKK ER+ L+ FE+ ++ RI++Y+G N+Y+KN+DDD+
Sbjct: 346 AIDNMNGKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDID 405
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
DE L+ FS GTITSAKVM + G +KGFGFVCFS+PEEA+ AV +G ++ KPLYV
Sbjct: 406 DENLRKEFSSFGTITSAKVMMNN-GRSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYV 464
Query: 367 AIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI---PSGYPSLYYTTPPGIVSQVPPRPGL 423
A+AQRKE+R+AHL QY Q MA I ++ + +G S Y+ TP ++Q R G
Sbjct: 465 ALAQRKEERKAHLANQYVQRMARIRSTATPTLGPYRTGASSRYFFTP---LTQSQSR-GA 520
Query: 424 MYQP---LGLRTG--WRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHY 478
Y P LR+ W A +FQ P++PK R P + +
Sbjct: 521 YYSPNHFAQLRSSPHWSAQRV---RSHSFQTITGPIHPKFCRS----------PLMSTSH 567
Query: 479 MQQS-------SQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
M S +Q S + + ++P R + K +G + + G+ R
Sbjct: 568 MSTSRISRRITTQRVTSPAHTLRPLCPPGTTFIPTLRSTQQYKYTGANYNHYQFIGIPPR 627
Query: 532 KPDMLNGML--------AAPS-----PEQQKQILGERLYPLVEKHKPDLVAKITGMLLEM 578
P + ++ A PS P+ QK++LGERL+PL++ P L KITGMLL+
Sbjct: 628 IPTLTRQLVAHLPGQEPAIPSTSTALPQPQKRVLGERLFPLIQDLHPTLAGKITGMLLDR 687
Query: 579 DNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPN 620
NSE+L +L SPE L K+ EA+ VL+ K EAI PN
Sbjct: 688 QNSEILRMLNSPECLRSKISEAMAVLQAHNEK----EAILPN 725
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 18/199 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
SP + +L++ +L +VTE L EKFS G I S+ + RD S G+ +VNF + D
Sbjct: 104 SPNSTMASLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLAD 163
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A R + MN +I K + +Q R + K NV+VKN++
Sbjct: 164 AERVMTDMNLYIIKGKPVRLMWSQ----------------RDPSLRKSGIGNVFVKNLEK 207
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L FS G I S KV+ D+ G +KG+GFV F E A +A+ +G +L+
Sbjct: 208 SINNKSLYDAFSSFGNILSCKVITDDNG-SKGYGFVHFEHRESAERAIQKMNGILLNDLK 266
Query: 364 LYVAIAQRKEDRQAHLQLQ 382
++V + ++DR++ L Q
Sbjct: 267 IFVGHFKSRKDRESELGAQ 285
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 268/639 (41%), Positives = 368/639 (57%), Gaps = 47/639 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+ + LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP R+SGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLIRDKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
AT E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 122 ATDEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D +E L E F +GKI S + E+G S+GFGFV ++ + A A++
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQ 241
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G K LY ARAQKKAER+Q L+ +FEE +K+R G N+YVKN+DD + DE
Sbjct: 242 ALNGKDMGDGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM DE+G +KGFGFVCF SP EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQYAQHMAGIE-----------GSSANVIPSGYPSLYYTTPPGIVSQV 417
AQRKE+R+AHL QY +HM G+ + +P+ PS + P I + +
Sbjct: 362 AQRKEERKAHLASQYMRHMTGMRMQQLGQLFPPNTAGGFFVPTMTPSQRFFGPQ-ITTPM 420
Query: 418 PPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVN-----PKHNRQNRGRMNGNMLP 472
P Q + T ++ + P RQ+ G P
Sbjct: 421 RSTPRWAQQQMRPATAVQSVQAGAASAAGAAAVGGFQGAAGAVPTQFRQSGAGARGTQ-P 479
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQ--KGGQSKYVPNGRI--RELNKGSGVSLGTFNSGGV 528
QV + ++ +AA++ SS + G QS PN +I ++ G+ ++
Sbjct: 480 QVQGTHAAAAAAAAANNMRSSGARAITGQQSVAAPNMQIAGAQIAGGAQQRAASYKYTSN 539
Query: 529 MARKPDMLNGMLAAPSPEQ---------------------QKQILGERLYPLVEKHKPDL 567
M R P + A P P Q QKQILGERLYP++E+ L
Sbjct: 540 M-RNPPVQQMQQAQPLPSQLQGKNQEKLIASLLANAKPQEQKQILGERLYPMIERMHATL 598
Query: 568 VAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKL 606
KITGMLLE++NSELL +LE E+L KVEEAV VL++
Sbjct: 599 AGKITGMLLEIENSELLHMLEDQEALKAKVEEAVAVLQV 637
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 270/616 (43%), Positives = 375/616 (60%), Gaps = 25/616 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D + RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G S+GHGFV FET+E+A AIE +NG + D++++VG F + +R + A +
Sbjct: 131 VCDENG-SRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ + L E FS+FGK S+ + D G S+GFGFVNF+ ++A++A+
Sbjct: 190 FTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVA 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I +++Y RAQK+ ER+ L+ +FE+ ++ER+ +Y+G N+YVKN+DD + DE
Sbjct: 250 DMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLM----Y 425
QRKE+R+A L QY Q +A + + S P Y PP + Q PR
Sbjct: 369 QRKEERKAILTNQYMQRLATMRALPGPFLGSFQPPPGYFLPP--IPQPQPRAAFYSPSPV 426
Query: 426 QPLGLRTGWRANGFVPPTRPAFQVSPL---PVNPKHNRQNRGRMN--GNMLPQVGAHYMQ 480
P+ T W A PT PA +P+ V P+ N M +P++ +
Sbjct: 427 VPVRPATRWSAQPSRSPTYPA--ATPVLRAAVQPRRLVSNISTMRQASTQVPRLTISSLL 484
Query: 481 QSSQ---SAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG----GVMARKP 533
++ S++ S+ G Y + +R + V G G V ++P
Sbjct: 485 VAANIGTQTVSARVPSSPTLRGAPHYKYSLAMRNIQPMGSVPPGAQQVGEPAVHVQGQEP 544
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
+ MLAA P++QKQ++GERLYPL+ L KITGMLLE+DNSELLLLLESPESL
Sbjct: 545 -LTASMLAAAPPQEQKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESPESL 603
Query: 594 AVKVEEAVQVLKLSEA 609
K+EEAV VL+ +A
Sbjct: 604 HSKIEEAVAVLQAHQA 619
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 106/195 (54%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD + S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI + + +Q R+ LR K NV++KN+DD
Sbjct: 66 ERALDTMNFEVIKGRPVRIMWSQ----RDPGLR------------KSGVGNVFIKNLDDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G ++G GFV F + E A++A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIETMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A
Sbjct: 169 FVGHFKSRKEREAEF 183
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 271/640 (42%), Positives = 373/640 (58%), Gaps = 59/640 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF+ FS + SVRVC+D+ T RS Y YVNF + DA A++
Sbjct: 2 ASLYVGDLHSDVTEAMLFEKFSAVGVVVSVRVCRDNITRRSLGYAYVNFQNMADAECALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L+G +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 62 TMNFEILNGCPMRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
A E G+SKG+GFV F+ E+SA +IE +NG + K+++VGRF+ + DR L A
Sbjct: 122 AQDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+D +V ++ L E F K+G I S + ++G+SRGFGFV F++P +A +A+
Sbjct: 182 FTNVYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVS 241
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
++G K Y RAQKKAER+ L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 242 ELHGKESPEGKTYYVGRAQKKAERQNELKRKFEQYKIERMNRYQGINLYVKNLDDTIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM D+ G +KGFGFVCFSSPEEA+KAV + ++ KPLYVA+
Sbjct: 302 HLRREFSVFGTITSAKVMMDD-GRSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYVAL 360
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSAN-VIPSGYPSLYY--TTP-------PGIVSQVP 418
AQRKE+R+AHL QY Q + S + G S Y+ T P P ++Q+
Sbjct: 361 AQRKEERKAHLNAQYLQSNTNMRMQSIGPIYQPGASSGYFVPTIPQGQRFYGPAQMTQIR 420
Query: 419 PRPGLMYQPL--------------GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRG 464
P+P QP + T +R G P PA Q + N NR +R
Sbjct: 421 PQPRWASQPQVRIATPQNAAAGHPNMATQYRNIGARAPV-PAGQQAAFTGNSMVNRNSR- 478
Query: 465 RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFN 524
P A + SA S + S + G KY N R G + G
Sbjct: 479 -------PISTAQQQIPGAVSAGSVRVPSARSSGSGYKYTANMR-----NPPGEAQGM-- 524
Query: 525 SGGVMARKP--------------DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
G R+P + MLA+ PE QKQ+LGERL+PL+++ P K
Sbjct: 525 -GQAQPRQPPAPVQAALHVHGQEPLTASMLASAKPEDQKQMLGERLFPLIQRIYPKFTGK 583
Query: 571 ITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
ITGMLLE+DNSE+L +LE ESL +KV+EAV V++ + +
Sbjct: 584 ITGMLLEIDNSEVLHMLEHQESLKIKVQEAVAVIQAHQTQ 623
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/625 (41%), Positives = 370/625 (59%), Gaps = 46/625 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL + +G+L+D F + + S+RVC+D S Y YVNF SP DA A+E
Sbjct: 13 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T L+GK +RI +S RDP RKSG AN+F+KNL SIDN L + F FG ++SCK+
Sbjct: 73 HLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKI 132
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A +G+SKG+GFVQFE EE+A AI+ LNG + DK++YVG F++ +R + + K+T
Sbjct: 133 ALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFT 192
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL T++ L F K+G I S ++ RD +G S+ FGFVNF + D A A+E +
Sbjct: 193 NVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHL 252
Query: 252 NGSVIG-SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
NG+ KV Y +AQ+K+ERE LR +FE++RK + K+KG+N+Y+KN+DD V DE+L
Sbjct: 253 NGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKL 312
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
K FS+ GTITS KVM D +G++KG GFV F +PEEA++A+N +G M+ RKPLYVA+AQ
Sbjct: 313 KELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQ 372
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANV-IPSGYPSLYYTTP-------------PGIVSQ 416
RKE+R+A LQ Q+AQ I A + SG P + P PG++
Sbjct: 373 RKEERKARLQAQFAQ----IRSPGAMTPLQSGVPGFHSGAPRLAPQQLYFGQGTPGLIPT 428
Query: 417 VPPRPGLMYQPL-GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRG-RMNGNMLPQV 474
P G Q + G+R G N F+ P + Q P Q G R GN
Sbjct: 429 QPAGYGFQQQLMPGMRPGVAPN-FIMPYQLQRQGQP--------GQRMGVRRGGNSQQMQ 479
Query: 475 GAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD 534
S S + +N + G VP G + G + L F+ G+ D
Sbjct: 480 HQQQPLLHRNSNQSYRYMANGRNGVDPSMVPQGLM-----GPVMPL-PFDVSGMPVSPMD 533
Query: 535 M----------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELL 584
+ L LA+ +P+ Q+ +LGE+L+PLVE+ + + K+TGMLLEMD +E+L
Sbjct: 534 IQRTGPVPMSTLASALASTTPDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVL 593
Query: 585 LLLESPESLAVKVEEAVQVLKLSEA 609
L+ESP++L KV EA+ VL+ S +
Sbjct: 594 HLIESPDALKNKVAEAMDVLRASSS 618
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
+ +++YV ++D + + +L F Q + S +V RD+ + + G+ +V F+SP++A+
Sbjct: 10 FANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATN 69
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A+ + L+ KP+ + + R
Sbjct: 70 ALEHLNFTPLNGKPIRIMFSHR 91
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/629 (42%), Positives = 379/629 (60%), Gaps = 58/629 (9%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +VTD +L+D F++ + SVRVC+D T+ RS YGYVN+ +P DA RA+EV
Sbjct: 26 SLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEV 85
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++G +R+ +S RDP RKSG N+F+KNL ++ID+ L + F FGNI+SCKVA
Sbjct: 86 LNFTPVNGSPIRVMYSHRDPSVRKSGAGNIFIKNLDKAIDHKALHDTFSVFGNILSCKVA 145
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQF++EE+A AIE LNG + DK++YVG F++K +R + ++ N
Sbjct: 146 TDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDKTRFNN 205
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL EE L + F +FG I S+++ RD +G SR FGFVNF+N DDA +A EA+N
Sbjct: 206 VFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEALN 265
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K + +AQKK ERE L+ +FE+ KE K++G+N+Y+KN+DD + DE++K
Sbjct: 266 GKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKIKE 325
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS GTITS KVMRD GI++G GFV FS+PEEAS+A+ +G M+ KPLYVA+AQRK
Sbjct: 326 LFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVALAQRK 385
Query: 373 EDRQAHL------QLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQ 426
EDR+A L QLQ+ H+ + ++ + Y ++S P PG YQ
Sbjct: 386 EDRRARLSFLKCDQLQW--HLQLVVCQCTPLLVPVLDNKYSMDKAHLLSCHPRLPGFGYQ 443
Query: 427 PLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQV--GAHYMQQSSQ 484
VP RP +P+P +P V G + +
Sbjct: 444 ----------QQLVPGMRPG--GAPMP--------------NFFVPMVQQGQQGQRPGGR 477
Query: 485 SAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVS--LGTFNSGGVMARKPDMLNGM--- 539
A + + S + Q + +P GR+ G G+ T +GG+++ DM GM
Sbjct: 478 RAGTGQQSQQPVQLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLSVPYDM-GGMPMR 536
Query: 540 ---LAAP-------------SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSEL 583
L+ P +P+QQ+ +LGE LYPLVE+ +P+ AK+TGMLLEMD +E+
Sbjct: 537 DAALSQPIPIGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEV 596
Query: 584 LLLLESPESLAVKVEEAVQVLKLSEAKVS 612
L LLESPE+L KV EA++VL+ + + +
Sbjct: 597 LHLLESPEALKSKVNEAMEVLRTVQQQAT 625
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 23/189 (12%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +L+++VT+ L + F++ G++ S+ + RD + S G+G+VN+ NP DA RALE
Sbjct: 25 TSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALE 84
Query: 250 AMNGS-VIGS--KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + V GS +V+Y+ R + K N+++KN+D +
Sbjct: 85 VLNFTPVNGSPIRVMYS-------------------HRDPSVRKSGAGNIFIKNLDKAID 125
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L FS G I S KV D G +KG+GFV F S E A KA+ +G +L+ K +YV
Sbjct: 126 HKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYV 185
Query: 367 AIAQRKEDR 375
RK++R
Sbjct: 186 GPFLRKQER 194
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 275/644 (42%), Positives = 378/644 (58%), Gaps = 58/644 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RV +D TT RS Y VNF DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+FVKNL SID+ L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E A AIE +NG + D++++VGRF + DR L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL D+ +E L + FS+FG S+ + DE+G S+GFGFV+F+ +DAR+A++
Sbjct: 190 FTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQF----------EEKRKERILKYKGSNVYVK 299
MNG + K +Y RAQKK ER+ L+H+F E+ ++R ++ +G N+YVK
Sbjct: 250 EMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVK 309
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+DD + DE L+ FS GTITSAKV E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 310 NLDDGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 368
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMA--------GI------EGSSANVIPSGYPS- 404
KPLYVA+AQRKE+RQAHL QY Q MA GI +G S + + P+
Sbjct: 369 ATKPLYVALAQRKEERQAHLSNQYMQRMASTSAVPNPGINPFQPAQGLSGYFMTATAPTQ 428
Query: 405 ---LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGF------VPP--TRPAFQVSPLP 453
YY P +Q P G G RA+ F + P T P+F S
Sbjct: 429 NRGTYYA--PNQTTQQGP------SARGSAQGTRAHPFQNMSSAIHPSNTMPSFSTS--- 477
Query: 454 VNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELN 513
P ++ R R +G H S+ +A +++ + Q KY R +
Sbjct: 478 -GPTSSQAVRHRTASTSTQMMGPHPAAASTAAAPAARTVT------QYKYTAGVRNPPQH 530
Query: 514 KGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITG 573
+ + T S K + MLA+ P+ QKQ+LGE L+ L++ P L KITG
Sbjct: 531 LNTQPQVTTQRSAVSAQGKESLTVSMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITG 590
Query: 574 MLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
MLLE+DN EL +LESPE L KV+EA+ VL+ +AK ++Q+A+
Sbjct: 591 MLLEIDNLELRHMLESPECLHTKVDEAIAVLQAHQAKETSQKAV 634
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF--VNFDNPDD 243
P+ +L++ +L DVTE L EKFS G I S+ + RD T R G+ VNF +D
Sbjct: 6 PSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRT-TRRSLGYASVNFQQLED 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN VI K + +Q R+ LR K N++VKN+D
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQ----RDPSLR------------KSGVGNIFVKNLDR 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ + L FS G I S KV+ DE G +KG+GFV F + EEA +A+ +G L+ +
Sbjct: 109 SIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRK 167
Query: 364 LYVAIAQRKEDRQAHL 379
++V + + DRQA L
Sbjct: 168 VFVGRFKSRRDRQAEL 183
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/619 (42%), Positives = 374/619 (60%), Gaps = 46/619 (7%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
PP+ SLYVGDL PDV + LF+ FS+ + S+RVC+D T RS Y YVNF P
Sbjct: 8 PPSFPPLQSLYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPA 67
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
DA RA++ N+ + G+ RI WS RDP R+SGV N+F+KNL +SID+ L + F FG
Sbjct: 68 DAERALDTMNYEPIKGQPCRIMWSQRDPSLRRSGVGNIFIKNLDKSIDHKALYDTFSAFG 127
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP 184
NI+SCKVAT + SKG GFV F+ +E+A+ AIE +NG + D ++YVG+FI + DR
Sbjct: 128 NILSCKVATDGNRHSKGFGFVHFDEQEAADLAIEKVNGKLLNDMKVYVGKFIPRKDRSHT 187
Query: 185 SPAAK-YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
+ + YTN+F+KN D T+ L + F K+G I S ++ +D G S+GFGFV+F++ +
Sbjct: 188 NGFNQHYTNVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGEGLSKGFGFVSFESHEA 247
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A A++A++ S++ + +Y RAQKK ER + L + EE+R+ER+ +Y+G N+Y+KN++D
Sbjct: 248 ASAAVQAVHNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLED 307
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ +E+LK+ FS+ G+ITSAK+M DE G +KGFGFVCFSSPEEA+KAV +G ++ KP
Sbjct: 308 TLGEEKLKSEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSKP 367
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSG----YPSLYYTTPPGIVSQVPP 419
LYVA+AQRKE+RQAHL Q Q + A IP G YP Y PGI +Q
Sbjct: 368 LYVALAQRKEERQAHLAAQRMQRI-------ARGIPQGQMQMYPPYYM---PGIQNQ--- 414
Query: 420 RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL--PVNPKHNRQNRGRMNGNMLPQVGAH 477
RP + G+ A RP +Q P+ P + +N +R R N +P+
Sbjct: 415 RPFFT----AMAAGYTA-------RP-WQGGPMHRPFSGGYNMHHRTRAN---VPRPSVG 459
Query: 478 YMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGS-GVSLGTFNSGGV-------M 529
+ ++ + Q+ Q + P GR + + S G N G +
Sbjct: 460 GAGGAGGQRMNTPQT--QRIAPQQRLNPQGRPGGVQQTKLQFSAGARNQPGGPMGGGMDL 517
Query: 530 ARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
+ P+ L+ L+ P ++KQI+GE LY + PD KITGMLLEMDNSELL +LE+
Sbjct: 518 GQDPEPLS-TLSQTDPMKRKQIIGEHLYRAISASHPDKAGKITGMLLEMDNSELLHMLEA 576
Query: 590 PESLAVKVEEAVQVLKLSE 608
PESL KVEEAV VL+ E
Sbjct: 577 PESLNSKVEEAVNVLREHE 595
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 261/598 (43%), Positives = 361/598 (60%), Gaps = 29/598 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ +P P QP
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF---------LPAMP----QPP 415
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
+ + G V PT+PA + + P P R + P + Q S+Q +
Sbjct: 416 A-QAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRPPVVPRRPPAHISSVRQASTQVPRT 474
Query: 489 SKDSSNQQKGGQSKYVPN-------GRIRELNKGSGVSLGTFNSGGVMARKPD---MLNG 538
+ G P+ GR K S + T+ P +
Sbjct: 475 VPHTQRVANIGTQTTGPSGVGCCTPGRPLLPCKCSSAAHSTYRVQEPAVHIPGQEPLTAS 534
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K
Sbjct: 535 MLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAK 592
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/625 (41%), Positives = 370/625 (59%), Gaps = 46/625 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL + +G+L+D F + + S+RVC+D S Y YVNF SP DA A+E
Sbjct: 473 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 532
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T L+GK +RI +S RDP RKSG AN+F+KNL SIDN L + F FG ++SCK+
Sbjct: 533 HLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKI 592
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A +G+SKG+GFVQFE EE+A AI+ LNG + DK++YVG F++ +R + + K+T
Sbjct: 593 ALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFT 652
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL T++ L F K+G I S ++ RD +G S+ FGFVNF + D A A+E +
Sbjct: 653 NVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHL 712
Query: 252 NGSVIG-SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
NG+ KV Y +AQ+K+ERE LR +FE++RK + K+KG+N+Y+KN+DD V DE+L
Sbjct: 713 NGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKL 772
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
K FS+ GTITS KVM D +G++KG GFV F +PEEA++A+N +G M+ RKPLYVA+AQ
Sbjct: 773 KELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQ 832
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANV-IPSGYPSLYYTTP-------------PGIVSQ 416
RKE+R+A LQ Q+AQ I A + SG P + P PG++
Sbjct: 833 RKEERKARLQAQFAQ----IRSPGAMTPLQSGVPGFHSGAPRLAPQQLYFGQGTPGLIPT 888
Query: 417 VPPRPGLMYQPL-GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRG-RMNGNMLPQV 474
P G Q + G+R G N F+ P + Q P Q G R GN
Sbjct: 889 QPAGYGFQQQLMPGMRPGVAPN-FIMPYQLQRQGQP--------GQRMGVRRGGNSQQMQ 939
Query: 475 GAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD 534
S S + +N + G VP G + G + L F+ G+ D
Sbjct: 940 HQQQPLLHRNSNQSYRYMANGRNGVDPSMVPQGLM-----GPVMPL-PFDVSGMPVSPMD 993
Query: 535 M----------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELL 584
+ L LA+ +P+ Q+ +LGE+L+PLVE+ + + K+TGMLLEMD +E+L
Sbjct: 994 IQRTGPVPMSTLASALASTTPDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVL 1053
Query: 585 LLLESPESLAVKVEEAVQVLKLSEA 609
L+ESP++L KV EA+ VL+ S +
Sbjct: 1054 HLIESPDALKNKVAEAMDVLRASSS 1078
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEAS 348
++ +++YV ++D + + +L F Q + S +V RD+ + + G+ +V F+SP++A+
Sbjct: 469 RFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDAT 528
Query: 349 KAVNTFHGYMLHRKPLYVAIAQR 371
A+ + L+ KP+ + + R
Sbjct: 529 NALEHLNFTPLNGKPIRIMFSHR 551
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 267/620 (43%), Positives = 355/620 (57%), Gaps = 58/620 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A E G SKG+GFV FETEE+AN +I+ +NG + K
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK----------------------- 167
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
KN D+T++ L E F K+G I S + ++G SRGFGFV F++PD A +A+ +
Sbjct: 168 ----KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLEL 223
Query: 252 NG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
NG V K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE L
Sbjct: 224 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERL 283
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ GTITSAKVM E G +KGFGFVCFS+PEEA+KAV +G ++ KPLYVA+AQ
Sbjct: 284 RREFAPFGTITSAKVMM-EDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQ 342
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSS-ANVIPSGYPSLYY--TTP-------PGIVSQVPPR 420
RKEDR+AHL QY Q +A + + P G Y+ T P P ++Q+
Sbjct: 343 RKEDRKAHLASQYMQRLANMRMQQMGQMFPPGGAGNYFVPTIPQPQRFYGPAQMAQIRAT 402
Query: 421 PGLMYQPLGLRTGWRA--NGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ----- 473
P QP +R + +GF A P P+ G M + +
Sbjct: 403 PRWPAQPNQVRPNAQTGNSGF------ATMQGPFRTTPRAPTAQAGTMRSTLSARPITGQ 456
Query: 474 --VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
VG MQ S A + S Q + KY N +R + + T V +
Sbjct: 457 QAVGGANMQSRSM-AGPAVGVSAQSRPSNYKYTSN--MRNPPQAMAIPAPTPVQQAVHIQ 513
Query: 532 KPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
+ L MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE
Sbjct: 514 GQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHN 573
Query: 591 ESLAVKVEEAVQVLKLSEAK 610
ESL KVEEAV VL+ +AK
Sbjct: 574 ESLKAKVEEAVAVLQAHQAK 593
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L +D+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R + K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----------------RDPSLRKSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
++ ++ + FS G I S KV +DE G++KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK 167
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 268/660 (40%), Positives = 383/660 (58%), Gaps = 57/660 (8%)
Query: 5 PPTAT-TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PP AT + ASLY+GDLH DVT+ LF+ FS + S+RVC+D+T+ S Y YVNF P
Sbjct: 54 PPNATYSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 113
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N +HG+ +RI WS RDP AR++G N+F+KNL IDN + + F F
Sbjct: 114 ADAERALDTMNFEIIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLF 173
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVAT +DG SKG+GFV FETE SA AIE +NG + DK+++VG+F ++ R+
Sbjct: 174 GNILSCKVATDDDGNSKGYGFVHFETEASAQTAIEKVNGMLLSDKKVFVGKFQPRAQRMK 233
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L KYTN+F+KN + E L E FSK+G+I S ++ D G +GFGFV + +P
Sbjct: 234 ELGESGLKYTNVFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAEGKPKGFGFVAYADP 293
Query: 242 DDARRALEAMNGSVI-GSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ A +A++ +N S++ G+++ L RAQKK+ER L+ ++E ++ER+ +Y+G N+YVK
Sbjct: 294 EAASKAVDDLNESILEGTELKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVK 353
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
NI++++TDE L+AHF+Q GTITSAKVM DE G +KGFGFVCF PEEA+ AV + M+
Sbjct: 354 NIEEELTDEGLRAHFAQFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMI 413
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIE-GSSANVIPSGYPSLY------YTTPPG 412
KPLYVA+AQRKEDR+A L QY Q +A + G A G +Y Y P
Sbjct: 414 GAKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQAAGGVPGMTQIYQPGQQGYYVPNP 473
Query: 413 IVSQVPPRPGLMYQPLGLR--TGWRA---------------NGFVPPTRPAFQVSPLPVN 455
+ + P RP Q +R G R GF RP P+
Sbjct: 474 MAA--PGRPAFQPQAAPMRGPPGQRMFNNQVFMQYPFNQQRQGFPQQGRP-------PMR 524
Query: 456 PKHNRQNRG---------RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQ---KGGQSKY 503
+ RQ G R+ G GA QQ ++ + Q+ +G ++
Sbjct: 525 TQDGRQQYGMAPRPNGPPRVGGPGAQMGGAPIRQQGGAPRGATHGAPQQKPYYQGPPRQH 584
Query: 504 VP-----NGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYP 558
P ++ + NSG V+ + + + MLA +P++QKQ+LGER+Y
Sbjct: 585 HPVQQHSQHAPQQQQQQQQQQQQPGNSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYA 644
Query: 559 LVEKHKPDL--VAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEA 616
L+EK P+ KITGM+LE+DN+EL+++L+ + KVEEA VL ++ + Q A
Sbjct: 645 LIEKMFPNHKDAGKITGMMLEIDNAELIMMLQDADLFRSKVEEAFTVLTQAQNASAGQAA 704
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/627 (42%), Positives = 374/627 (59%), Gaps = 42/627 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPVDAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G S+G+GFV FET E+A AIE +NG + D++++VG F + +R + A +
Sbjct: 131 VCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGAKAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR--- 246
+TN+++KN D+ ++ L E FSKFGK S+ + D G S+GFGFVNF+ ++A++
Sbjct: 190 FTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEKHEEAQKARG 249
Query: 247 -------------ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
A+ MNG I +++Y RAQK+ ER+ L+ +FE+ ++ER+ +Y+G
Sbjct: 250 SSCCAQRPPLRWQAVADMNGKEINGRIVYVGRAQKRLERQSELKRKFEQIKQERVSRYQG 309
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
N+YVKN+DD + D+ L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV
Sbjct: 310 VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTE 368
Query: 354 FHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGI 413
+G ++ KPLYVA+AQRKE+R+A L QY Q +A + ++ S P Y PP
Sbjct: 369 MNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATLRALPGPLLGSFQPPPGYFLPPIP 428
Query: 414 VSQV-----PPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMN- 467
Q P P + +P T W A PP P + + V P+ N M
Sbjct: 429 QPQTRATFYSPSPVVPVRPA---TRWSAQPSRPPPTPILRAA---VPPRRLLTNISTMRQ 482
Query: 468 -GNMLPQVGAHYMQQS---SQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTF 523
+P+V + + +Q+ ++ SS G +Y + +R + +
Sbjct: 483 ASTQVPRVPPQAQRVANIGTQTVSARVPSSPTLPRGTPQYKYSSSVRNVQPMGHMPPVVA 542
Query: 524 NSGG-----VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEM 578
G V ++P + +LAA P++QKQ++GERLYPL+ P L KITGMLLE+
Sbjct: 543 PQVGEPAVHVQGQEP-LTASVLAAAPPQEQKQMIGERLYPLIYAIHPSLAGKITGMLLEI 601
Query: 579 DNSELLLLLESPESLAVKVEEAVQVLK 605
DNSELLLLLESP+SL K+EEAV VL+
Sbjct: 602 DNSELLLLLESPDSLRSKMEEAVAVLQ 628
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 106/195 (54%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPVDA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI + + +Q R+ LR K NV++KN+DD
Sbjct: 66 ERALDTMNFEVIKGRPIRIMWSQ----RDPGLR------------KSGVGNVFIKNLDDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G ++G+GFV F + E A++A+ T +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A
Sbjct: 169 FVGHFKSRKEREAEF 183
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/620 (42%), Positives = 354/620 (57%), Gaps = 58/620 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A E G SKG+GFV FETEE+AN +I+ +NG + K
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK----------------------- 167
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
KN D+T++ L E F K+G I S + ++G SRGFGFV F++PD A +A+ +
Sbjct: 168 ----KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLEL 223
Query: 252 NG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
NG V K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE L
Sbjct: 224 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERL 283
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ GTITSAKVM +E G +KGFGFVCFS+PEEA+KAV +G ++ KPLYVA+AQ
Sbjct: 284 RKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQ 342
Query: 371 RKEDRQAHLQLQYAQHMAGIE----------GSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
RKEDR+AHL QY Q +A + G + N P P ++Q+
Sbjct: 343 RKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTT 402
Query: 421 PGLMYQPLGLRTGWR--ANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ----- 473
P QP +R + ++GF A P P+ G M + +
Sbjct: 403 PRWPAQPNQVRPNAQTGSSGF------ATMQGPFRAAPRAPTAQAGTMRNTLSARPITGQ 456
Query: 474 --VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
VG MQ S A + S Q + KY N +R + + T V +
Sbjct: 457 QAVGGANMQNRSM-AGPAVGVSAQSRPSNYKYTSN--MRNPPQAMAIPAPTPVQQAVHIQ 513
Query: 532 KPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
+ L MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE
Sbjct: 514 GQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHN 573
Query: 591 ESLAVKVEEAVQVLKLSEAK 610
ESL KVEEAV VL+ +AK
Sbjct: 574 ESLKAKVEEAVAVLQAHQAK 593
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L SD+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R + K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----------------RDPSLRKSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
++ ++ + FS G I S KV +DE G++KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 256/618 (41%), Positives = 372/618 (60%), Gaps = 53/618 (8%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVGDL PDV + +L++ F+ ++S+RVC+D+ T RS Y YVNF P+DA RA++
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N ++GK RI WS RDP R+SGV N+F+KNL + IDN + + F FGNI+SCK+A
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIAL 140
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYT 191
E+G SKG+ FV FET+E+AN AIE +NG + K+++VG F+ + +R+ + + AAKYT
Sbjct: 141 DENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYT 200
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KN D++++ + F + GKI S ++ RD++G SRGFGFV+++ + A++A+E +
Sbjct: 201 NLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETL 260
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + +Y ARAQKK+ER +LR Q+E+K++E + +++G N+YVKN+DD + D +L+
Sbjct: 261 NEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLR 320
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F+ GTITSAKVM DEKGI++GFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQR
Sbjct: 321 QEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQR 380
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSL--------YYTTPPGI--------- 413
KEDR+A L QY Q M+ + IP G P + YY PG+
Sbjct: 381 KEDRKAQLAAQYVQRMSTLR------IPQPGQPGVNQMFQQGGYYM--PGMHQGQQQQQR 432
Query: 414 ---VSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGR-MNGN 469
Q+P RP Q + R + S ++ RGR M
Sbjct: 433 FYATQQMPARPRWQNQQM--------------MRNSGGGSSYGGIGGGSQMGRGRGMRFA 478
Query: 470 MLPQVGAHYMQQSSQSAASSKDS--SNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGG 527
+P+ SQ +A++ + SNQ + K+ +R + S +
Sbjct: 479 GVPRSQGQQNVNPSQRSAAANAALVSNQPRHPPYKH---SNVRNI-PPQAPSQANHQTRA 534
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEK-HKPDLVAKITGMLLEMDNSELLLL 586
A+ D L L+ QQKQILGE+LYP VE + KITGMLLE++N+E+L +
Sbjct: 535 QPAQDADNLTTHLSQVDEPQQKQILGEKLYPRVEAICGSEKAGKITGMLLEIENAEVLHM 594
Query: 587 LESPESLAVKVEEAVQVL 604
LES E+L KV+EA+ VL
Sbjct: 595 LESKEALDSKVQEAIDVL 612
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 266/625 (42%), Positives = 354/625 (56%), Gaps = 68/625 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A E G SKG+GFV FETEE+AN +I+ +NG + K
Sbjct: 131 AQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK----------------------- 167
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
KN D+T++ L + F K+G I S + ++G SRGFGFV F++PD A +A+ +
Sbjct: 168 ----KNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLEL 223
Query: 252 NG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
NG V K +Y RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE L
Sbjct: 224 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERL 283
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ GTITSAKVM +E G +KGFGFVCFS+PEEA+KAV +G ++ KPLYVA+AQ
Sbjct: 284 RKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQ 342
Query: 371 RKEDRQAHLQLQYAQHMAGIE----------GSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
RKEDR+AHL QY Q +A + G + N P P ++Q+
Sbjct: 343 RKEDRKAHLASQYMQRLANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTT 402
Query: 421 PGLMYQPLGLR----TG----------WRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRM 466
P QP +R TG +RA P +P S L P +Q
Sbjct: 403 PRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITGQQT---- 458
Query: 467 NGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
VG MQ S A + + Q + KY N +R + + T
Sbjct: 459 -------VGGANMQNRSM-AGPAVGVTAQSRPSNYKYTSN--MRNPPQAMAIPAPTPVQQ 508
Query: 527 GVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
V + + L MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL
Sbjct: 509 AVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLH 568
Query: 586 LLESPESLAVKVEEAVQVLKLSEAK 610
+LE ESL KVEEAV VL+ +AK
Sbjct: 569 MLEHNESLKAKVEEAVAVLQAHQAK 593
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L SD+TE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 5 APNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN +I + + +Q R + K NV++KN+D
Sbjct: 65 AERALDTMNFDMIKGRPIRIMWSQ----------------RDPSLRKSGVGNVFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
++ ++ + FS G I S KV +DE G++KG+GFV F + E A+K+++ +G +L+ K
Sbjct: 109 NIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 262/602 (43%), Positives = 363/602 (60%), Gaps = 53/602 (8%)
Query: 49 TGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLI 108
T RS Y YVNF P DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPPLRKSGVGNIFIKNLD 62
Query: 109 ESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDK 168
+SIDN L + F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D+
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 121
Query: 169 RIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE 226
++ VGRF + +R L + A ++TN+++KN D+ +E L + F KFG S+ + DE
Sbjct: 122 KVSVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 181
Query: 227 NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKE 286
+G S+GFGFV+F+ +DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++
Sbjct: 182 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 241
Query: 287 RILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEE 346
RI +Y+G N+YVKN+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEE
Sbjct: 242 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEE 300
Query: 347 ASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------P 399
A+KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA + VI P
Sbjct: 301 ATKAVTGMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPP 360
Query: 400 SGY----------PSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQ 448
SGY + YY PP ++Q+ P P W A G RP FQ
Sbjct: 361 SGYFMAAIPQTQNRAAYY--PPSQIAQLRPSP-----------RWTAQG----ARPHPFQ 403
Query: 449 VSPLPVNPKHNRQNRGRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYV 504
P + P R M + +P+V + S+Q+ ++ + V
Sbjct: 404 NMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTV 463
Query: 505 PNGRI--------RELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERL 556
P + + LN V++ + V ++P + MLA+ P++QKQ+LGERL
Sbjct: 464 PQYKYAAGVRNPQQHLNAQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERL 521
Query: 557 YPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEA 616
+PL++ P L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A
Sbjct: 522 FPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 581
Query: 617 IH 618
++
Sbjct: 582 VN 583
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D +G+S +G+V+F DA +A++
Sbjct: 147 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 205
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 206 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 264
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 265 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTGMNGRIVATKPLYVALA 323
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 324 QRKEER-----QAHLTNQYMQRMAS 343
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/616 (41%), Positives = 374/616 (60%), Gaps = 32/616 (5%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL V++ +L++ FS+ + S+RVC+D T RS Y YVN+ + DA RA+E+
Sbjct: 25 SLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALEL 84
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N ++GK +RI +S RDP RKSG AN+F+KNL +SIDN L + F FG I+SCKVA
Sbjct: 85 LNFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILSCKVA 144
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQFE EESA AIE +NG + DK+++VG F+++ +R +K+ N
Sbjct: 145 TDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNN 204
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL T++ L + F +G I+S ++ RD G S+ FGFVNF++ DDA +A+EA+N
Sbjct: 205 VYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALN 264
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y RAQKK+ERE LR +FE++RKERI KY+G N+Y+KN+DD + DE+L+
Sbjct: 265 GKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDEKLRE 324
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS+ GTI S KVMRD +G ++G GFV FSSP+EA++AV +G M+ KPLYVA+AQRK
Sbjct: 325 IFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLYVALAQRK 384
Query: 373 EDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGI------VSQVPPRP----- 421
E+R+ LQ +AQ +P+ P +Y+ PG+ Q PP P
Sbjct: 385 EERRNRLQAAFAQRT-----PVGPAVPTSLP-MYHPAGPGMGPGMSYYGQHPPGPIPLQP 438
Query: 422 -GLMYQPLGLRTGW----RANGF--VPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQV 474
YQP +R G GF VPP R Q + + + + Q
Sbjct: 439 AAFGYQPQLIRPGGAQFPNYMGFPNVPPLRQGQQGQ--RAGGRRGGAPQQQQPQQQMIQR 496
Query: 475 GAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD 534
G + + + +A ++ D + +G +P + G GV + ++G P
Sbjct: 497 GGNRNFRYTTNARNTPDVAVPPQGIMGAMLP----VPIEIG-GVPVANADAGVPQQPLPI 551
Query: 535 MLNGMLAAPSPEQQKQ-ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
A +P +Q++ +LGE+LYPLV++ + D K+TGMLLEMD +E+L L+ESPE+L
Sbjct: 552 SALASALASAPPEQQRAMLGEQLYPLVDQLEHDFAGKVTGMLLEMDQTEVLHLIESPEAL 611
Query: 594 AVKVEEAVQVLKLSEA 609
KV EA+ VL++++A
Sbjct: 612 KAKVAEAMDVLRMAQA 627
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/614 (42%), Positives = 368/614 (59%), Gaps = 27/614 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDL P V + L D F++ + ++RVC+D T RS Y YVNF +P DA RA+E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAME 117
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + + +RI S RDP R SG N+F+KNL SIDN L E F +FG I+SCKV
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 177
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA--K 189
A G+SKG+GFVQFE EE+A AAI+ LNG + DK+++VG F+++ DR A
Sbjct: 178 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 237
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL ++T++ L + F K+G I+S ++ +D++G SR FGFVNF +P+ A A+E
Sbjct: 238 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG +G VLY RAQKK++RE+ LR +FE++R R K +GSN+Y+KN+DD V DE+
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS+ G +TS KVM + +G+++GFGFV +S+PEEA A+ +G M+ RKPLYVA+A
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYP-SLYYTTPPGIVSQVPPRP------- 421
QRKE+RQAHLQ + Q S + P P S ++ PPG P P
Sbjct: 418 QRKEERQAHLQSLFTQIR-----SPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNG 472
Query: 422 -GLM-YQPLGLRTGWRANGFVPPTRPAFQ----VSPLPVNPKHNRQNR-GRMNGNMLPQV 474
GL+ QP+G G++ F+P RP + P P+ + R G G Q
Sbjct: 473 QGLVPSQPMGY--GYQVQ-FMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQ 529
Query: 475 GAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI-RELNKGSGVSLGTFNSGGVMARKP 533
Q Q+A+ + ++ G P G I LN + S
Sbjct: 530 QFQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTI 589
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
L LA SP++ ++LG+ LYPLVE+ +P AK+TGMLLEMD +E+L LLESPE+L
Sbjct: 590 SKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEAL 649
Query: 594 AVKVEEAVQVLKLS 607
KV EA+ VL+ S
Sbjct: 650 KAKVSEALDVLRRS 663
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 47/81 (58%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+ S++YV ++D V + L F+Q + + +V RD + G+ +V F++PE+AS+A
Sbjct: 56 HPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRA 115
Query: 351 VNTFHGYMLHRKPLYVAIAQR 371
+ + + + +P+ + ++ R
Sbjct: 116 MESLNYAPIRDRPIRIMLSNR 136
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/627 (41%), Positives = 365/627 (58%), Gaps = 59/627 (9%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+ D R
Sbjct: 43 TVSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGER 102
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
A+E N++ + G+ RI WS RDP RK+G N+F+KNL +SIDN L + F FG+I+S
Sbjct: 103 ALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS 162
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSP 186
CKV T E+GKS+G FV + T E+A+AAI+ +NG + DK++YVG + K +R+ +
Sbjct: 163 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEEL 222
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
A++TN+++KN+D +VT+ + FG S+ ++RDE G S+GFGFVN++N + AR+
Sbjct: 223 RAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARK 282
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
A++ +N + K LYA RAQ K+ERE L+ EEKR E K G N+YVKN+DD+
Sbjct: 283 AVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWD 342
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
D+ L+A F GTITS+KVMRD+ G+++GFGFVC+SSP+EA+KAV+ +G M+ KPLYV
Sbjct: 343 DDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYV 402
Query: 367 AIAQRKEDRQAHLQLQYA-------QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP 419
A+AQRK+ R+ L+ Q A Q+ AG G + G P Y PG P
Sbjct: 403 ALAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYM---GQPMYGYPPMPGYGQ---P 456
Query: 420 RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL---PVNPKHNRQNRGRMNGNMLPQVGA 476
PG+ PP R P+ P P++ Q+R R N N P G
Sbjct: 457 MPGM-----------------PPVR-----GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG 494
Query: 477 --HYMQQSSQSAASSKDSSNQQKGGQSKYVP------NGRIRELNKGSGVSLGTFNSGGV 528
Y + + G + P NG + G+ G+ GG
Sbjct: 495 VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQ 554
Query: 529 MARKPD-----------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE 577
M +P + LA +P +QKQ+LGE LYPL+ + +P+L KITGMLLE
Sbjct: 555 MPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLE 614
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVL 604
MDN+ELL L+ES +L KV+EA++VL
Sbjct: 615 MDNAELLHLVESQPALQEKVDEALRVL 641
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 263/614 (42%), Positives = 368/614 (59%), Gaps = 27/614 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDL P V + L D F++ + ++RVC+D T RS Y YVNF +P DA RA+E
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAME 103
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + + +RI S RDP R SG N+F+KNL SIDN L E F +FG I+SCKV
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 163
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA--K 189
A G+SKG+GFVQFE EE+A AAI+ LNG + DK+++VG F+++ DR A
Sbjct: 164 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 223
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL ++T++ L + F K+G I+S ++ +D++G SR FGFVNF +P+ A A+E
Sbjct: 224 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 283
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG +G VLY RAQKK++RE+ LR +FE++R R K +GSN+Y+KN+DD V DE+
Sbjct: 284 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS+ G +TS KVM + +G+++GFGFV +S+PEEA A+ +G M+ RKPLYVA+A
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYP-SLYYTTPPGIVSQVPPRP------- 421
QRKE+RQAHLQ + Q S + P P S ++ PPG P P
Sbjct: 404 QRKEERQAHLQSLFTQIR-----SPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNG 458
Query: 422 -GLM-YQPLGLRTGWRANGFVPPTRPAFQ----VSPLPVNPKHNRQNR-GRMNGNMLPQV 474
GL+ QP+G G++ F+P RP + P P+ + R G G Q
Sbjct: 459 QGLVPSQPMGY--GYQVQ-FMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQ 515
Query: 475 GAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI-RELNKGSGVSLGTFNSGGVMARKP 533
Q Q+A+ + ++ G P G I LN + S
Sbjct: 516 QFQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTI 575
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
L LA SP++ ++LG+ LYPLVE+ +P AK+TGMLLEMD +E+L LLESPE+L
Sbjct: 576 SKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEAL 635
Query: 594 AVKVEEAVQVLKLS 607
KV EA+ VL+ S
Sbjct: 636 KAKVSEALDVLRRS 649
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 47/81 (58%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+ S++YV ++D V + L F+Q + + +V RD + G+ +V F++PE+AS+A
Sbjct: 42 HPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRA 101
Query: 351 VNTFHGYMLHRKPLYVAIAQR 371
+ + + + +P+ + ++ R
Sbjct: 102 MESLNYAPIRDRPIRIMLSNR 122
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 262/600 (43%), Positives = 364/600 (60%), Gaps = 52/600 (8%)
Query: 40 SVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGV 99
S+RVC+D T RS Y YVNF P DA RA++ N + GK +RI WS RDP RKSGV
Sbjct: 26 SIRVCRDMITRRSLFYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGV 85
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
N+F+KNL +SIDN L + F FGNI+SCKV E+G SKG+ FV FET+++A+ AIE
Sbjct: 86 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEK 144
Query: 160 LNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+NG + D++++VGRF + +R L + A ++TN+++KN D+ +E L E F K+GK
Sbjct: 145 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKT 204
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S+ + D G S+GFGFV+F+ ++A +A+E MNG I K+++ RAQKK ER+ L+
Sbjct: 205 LSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 264
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+FE+ ++ERI +Y+G N+Y+KN+DD + DE+L+ FS G+ITSAKVM +E G +KGFG
Sbjct: 265 RRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE-GRSKGFG 323
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANV 397
FVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+R+AHL QY Q +AG+ AN
Sbjct: 324 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANA 383
Query: 398 I-------PSGY--PSL--------YYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGF- 439
I GY P++ YY P ++Q+ P P + G R GF
Sbjct: 384 ILNQFQPAAGGYFMPAVPQAQSRPPYYA--PNQMTQIRPNP-------RWQQGGRPQGFQ 434
Query: 440 -VPPTRPAFQVSPLP----VNPKHNRQNRGRMNGNM----LPQVGAHYMQQSSQSAASSK 490
+P R Q P P + P N Q + G +P G + + +AA
Sbjct: 435 GMPNMR---QSGPRPNLRHLAPAGNAQASRGLPGAPQRVGIPPTGPN-LAPRPPAAAQVP 490
Query: 491 DSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQ 550
+ K S P+ ++ L V ++P + MLAA P++QKQ
Sbjct: 491 RAVPPYKYASSVRSPHPAVQPLQAPQPAV-------HVQGQEP-LTASMLAAAPPQEQKQ 542
Query: 551 ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+LGERL+PL++ L KITGMLLE+DNSELL +LESPESL KVEEAV VL+ +AK
Sbjct: 543 MLGERLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAK 602
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 262/613 (42%), Positives = 370/613 (60%), Gaps = 25/613 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDL P V + L D F++ + ++RVC+D T RS Y YVNF +P DA RA+E
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAME 103
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + + +RI S RDP R SG N+F+KNL SIDN L E F +FG I+SCKV
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 163
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA--K 189
A G+SKG+GFVQFE EE+A AAI+ LNG + DK+++VG F+++ DR A
Sbjct: 164 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 223
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL ++T++ L + F K+G I+S ++ +D++G SR FGFVNF +P+ A A+E
Sbjct: 224 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 283
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG +G VLY RAQKK++RE+ LR +FE++R R K +GSN+Y+KN+DD V DE+
Sbjct: 284 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS+ G +TS KVM + +G+++GFGFV +S+PEEA A+ +G M+ RKPLYVA+A
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP-------- 421
QRKE+RQAHLQ + Q + + + +PS S ++ PPG P P
Sbjct: 404 QRKEERQAHLQSLFTQIRS---PGTMSPVPSPM-SGFHHHPPGGPMSGPHHPMFIGHNGQ 459
Query: 422 GLM-YQPLGLRTGWRANGFVPPTRPAFQ----VSPLPVNPKHNRQNR-GRMNGNMLPQVG 475
GL+ QP+G G++ F+P RP + P P+ + R G G Q
Sbjct: 460 GLVPSQPMGY--GYQVQ-FMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQ 516
Query: 476 AHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI-RELNKGSGVSLGTFNSGGVMARKPD 534
Q Q+A+ + ++ G P G I LN + S
Sbjct: 517 FQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTIS 576
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
L LA SP++ ++LG+ LYPLVE+ +P AK+TGMLLEMD +E+L LLESPE+L
Sbjct: 577 KLASDLALASPDKHPRMLGDHLYPLVEQQEPANPAKVTGMLLEMDQAEILHLLESPEALK 636
Query: 595 VKVEEAVQVLKLS 607
KV EA+ VL+ S
Sbjct: 637 AKVSEALDVLRRS 649
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 47/81 (58%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+ S++YV ++D V + L F+Q + + +V RD + G+ +V F++PE+AS+A
Sbjct: 42 HPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRA 101
Query: 351 VNTFHGYMLHRKPLYVAIAQR 371
+ + + + +P+ + ++ R
Sbjct: 102 MESLNYAPIRDRPIRIMLSNR 122
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 269/632 (42%), Positives = 367/632 (58%), Gaps = 62/632 (9%)
Query: 28 LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87
L++ FS + S+RVC+D T RS Y YVNF P DA RA++ N + GK +RI W
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 61
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQF 147
S RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV E+G SKG+ FV F
Sbjct: 62 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHF 120
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEE 205
ET+E+A+ AIE +NG + D++++VGRF + +R L + A ++TN+++KN +V +E
Sbjct: 121 ETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 180
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265
L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E MNG I K+++ R
Sbjct: 181 SLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 240
Query: 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
AQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+L+ FS G+ITSAKV
Sbjct: 241 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 300
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
M E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+R+AHL QY Q
Sbjct: 301 ML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 359
Query: 386 HMAGIEGSSANVI-------PSGY--PSL--------YYTTPPGIVSQVPPRPGLMYQPL 428
+AG+ AN I GY P++ YYT P ++Q+ P P
Sbjct: 360 RVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PNQLAQMRPNP------- 410
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRG-----RMNGNMLPQVGAHY 478
+ G R GF Q P P + P N +RG + G+ P A
Sbjct: 411 RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLA-- 468
Query: 479 MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNG 538
M AA + + Q GG V N R + R P
Sbjct: 469 MDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQ 528
Query: 539 MLAAPSP--------------------EQQKQILGERLYPLVEKHKPDLVAKITGMLLEM 578
L AP P ++QKQ+LGERL+PL++ +L KITGMLLE+
Sbjct: 529 PLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEI 588
Query: 579 DNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 589 DNSELLHMLESPESLRSKVDEAVAVLQAHHAK 620
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 111/203 (54%), Gaps = 25/203 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + +V D L + FS+F SV+V +D +G+S +G+V++ DA +A+E
Sbjct: 167 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEE 225
Query: 73 KNHTQLHGKMLRISWSCRDPD-----------------ARKSGVANLFVKNLIESIDNVR 115
N ++ GK++ + + + + +R GV NL++KNL ++ID+ +
Sbjct: 226 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 284
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG+I S KV EDG+SKG GFV F + E A A+ +NG VG K +YV
Sbjct: 285 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 343
Query: 176 IKKSDRVLPSPAAKYTNLFMKNL 198
+K +R A TN +M+ +
Sbjct: 344 QRKEER-----KAHLTNQYMQRV 361
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 257/627 (40%), Positives = 365/627 (58%), Gaps = 59/627 (9%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+ D R
Sbjct: 45 TVSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGER 104
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
A+E N++ + G+ RI WS RDP RK+G N+F+KNL +SIDN L + F FG+I+S
Sbjct: 105 ALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS 164
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSP 186
CKV T E+GKS+G FV + T E+A+AAI+ +NG + DK++YVG + K +R+ +
Sbjct: 165 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEEL 224
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
A++TN+++KN+D +VT+ + FG S+ ++RDE G S+GFGFVN++N + A++
Sbjct: 225 RAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHESAKQ 284
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
A++ +N I K LYA RAQ K+ERE L+ EEKR E K G N+Y+KN+DD+
Sbjct: 285 AVDELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWD 344
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
D+ L+A F GTITS+KVMRD+ G+++GFGFVC+SSP+EA+KAV+ +G M+ KPLYV
Sbjct: 345 DDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYV 404
Query: 367 AIAQRKEDRQAHLQLQYA-------QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP 419
A+AQRK+ R+ L+ Q A Q+ AG G + G P Y PG P
Sbjct: 405 ALAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYM---GQPMYGYPPMPGYGQ---P 458
Query: 420 RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL---PVNPKHNRQNRGRMNGNMLPQVGA 476
PG+ PP R P+ P P++ Q+R R N N P G
Sbjct: 459 MPGM-----------------PPVR-----GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG 496
Query: 477 --HYMQQSSQSAASSKDSSNQQKGGQSKYVP------NGRIRELNKGSGVSLGTFNSGGV 528
Y + + G + P NG + G+ G+ GG
Sbjct: 497 VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQ 556
Query: 529 MARKPD-----------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE 577
M +P + LA +P +QKQ+LGE LYPL+ + +P+L KITGMLLE
Sbjct: 557 MPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLE 616
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVL 604
MDN+ELL L+ES +L KV+EA++VL
Sbjct: 617 MDNAELLHLVESQPALQEKVDEALRVL 643
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 252/592 (42%), Positives = 356/592 (60%), Gaps = 61/592 (10%)
Query: 32 FSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD 91
FS + S+RVC+D T RS Y YVNF P DA RA++ N + G+ LRI WS RD
Sbjct: 18 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQRD 77
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEE 151
P RKSGV N+F+KNL +SIDN L + F FGNI+SCKV E+G SKG+GFV FET E
Sbjct: 78 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHE 136
Query: 152 SANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVE 209
+A AIE +NG + D++++VGRF + +R L + A ++TN+++KN D+ +E L E
Sbjct: 137 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKE 196
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FSK+G S+ + D++G S+GFGFV+F+ +DA++A++ MNG + + +Y RAQKK
Sbjct: 197 LFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKK 256
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE L+ FS GTITSAKVM E
Sbjct: 257 GERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM-E 315
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAG 389
G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA
Sbjct: 316 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMAT 375
Query: 390 IEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLM-YQPLGLRTGWRANGFVPPTRPAFQ 448
+ P P L YQP PP+ +
Sbjct: 376 VRAV-------------------------PNPVLNPYQP------------APPS--GYF 396
Query: 449 VSPLPVNPKHNRQNRGRMNGNMLPQVGAHY-MQQSSQSAASSKDSSNQQKGGQSKYVPNG 507
++ +P QNR A+Y Q +Q S + + +++ KY
Sbjct: 397 MAAIP-----QTQNRA-----------AYYSANQLAQLRPSPRWNDSRECAHSYKYAAGV 440
Query: 508 RIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL 567
R + + S + ++ + + MLA+ P++QKQ+LGERL+PL++ P L
Sbjct: 441 RNPQQHMASQPQVAMQQPAVLVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQDVHPSL 500
Query: 568 VAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHP 619
KITGMLLE+DNSELL +LESPESL K++EAV VL+ +AK + Q++ P
Sbjct: 501 AGKITGMLLEIDNSELLHMLESPESLRSKMDEAVAVLQAHQAKEAAQKSTTP 552
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 25/203 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D +L + FS++ S+RV D +G+S +G+V+F DA +A++
Sbjct: 179 NVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQKAVDD 237
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+G+ + + + + D R GV NL+VKNL + +D+ R
Sbjct: 238 MNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGV-NLYVKNLDDGLDDER 296
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 297 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 355
Query: 176 IKKSDRVLPSPAAKYTNLFMKNL 198
+K +R A TN +M+ +
Sbjct: 356 QRKEER-----QAHLTNQYMQRM 373
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 260/618 (42%), Positives = 366/618 (59%), Gaps = 26/618 (4%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
M V P+ ASLYVGDLHP+ T+ L+D FS+ + S+RVC+D T RS Y YVNF
Sbjct: 1 MTTVAPSYPM-ASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNF 59
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
P DA RAI+ N +L GK +RI WS RDP RKSGV N+F+KNL ++IDN L + F
Sbjct: 60 QRPEDAERAIDTMNFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTF 119
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
FGNI+SCKV + G+SKG+GFV FETEE+A AIE L+G + DK+++VGRF + +
Sbjct: 120 SAFGNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGE 179
Query: 181 RV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
RV A ++TN+F+KNL ++ + L E F + G + S+ +A DENG SR FGFV+F
Sbjct: 180 RVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSF 239
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
+ + A + +E ++ K ++ RAQKKAER+ L+ +FE+ + ER +Y+G N+YV
Sbjct: 240 ETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYV 299
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRD---EKGINKGFGFVCFSSPEEASKAVNTFH 355
KN+DD +TD+ L+ HF+ G ITS+KVM D E +KGFGFVCF+S EEA+KAV +
Sbjct: 300 KNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMN 359
Query: 356 GYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSL--YYTTPPGI 413
G ++ KPLYVA+AQRK++R+AHLQ QY Q + G P+ P Y PP
Sbjct: 360 GRIIASKPLYVALAQRKDERKAHLQQQYMQRVT--TGMRLQAFPTNQPQYGNLYMPPP-- 415
Query: 414 VSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ 473
+ Q P R + P W + + ++ L ++ RG+M G Q
Sbjct: 416 IQQHPFRMSIRPTPR-----WSQVKYDQLVKLRSKIRFLIKPSQYGPMVRGQMPGGPRAQ 470
Query: 474 VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP 533
G + ++ A++ + + QS G L + + + P
Sbjct: 471 NGVRGIAPITRFPANNYTARAGSRPNQSIIYKPGVRNPLPTPAEAQIPA--EQAAQPKAP 528
Query: 534 DM---LNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
D LN +LAA P++QKQ+LGERLYP + + P+L KITGMLLE++NSELL +L++
Sbjct: 529 DTEQPLNATILAAAPPQEQKQLLGERLYPSIRQLYPELCGKITGMLLEIENSELLAMLDT 588
Query: 590 ---PESLAVKVEEAVQVL 604
P L KV+EAV VL
Sbjct: 589 KSNPGLLQEKVQEAVTVL 606
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/660 (40%), Positives = 371/660 (56%), Gaps = 73/660 (11%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P + SLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+L+ D
Sbjct: 78 PASQPNTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAAD 137
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA+E N++ + K RI WS RDP RK+G N+F+KNL E+IDN L + F FG+
Sbjct: 138 AERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGD 197
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVAT E G SKG+GFV + T ESA AAI+ +NG + DK ++VG + + DR +
Sbjct: 198 ILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKI 257
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
+++TNL++KNL ++ T E L E F KFG I S + DE+G RGFGFVN++N +
Sbjct: 258 DEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHES 317
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A++A++ VLY ARAQK+ ER+ L+ E+++ E LKY+G N+YVKN+DD
Sbjct: 318 ASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDD 377
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ DE+L+ F+ GTITS KVM+DEKG +KGFGFVCFSSP+EA+KAV +G ML KP
Sbjct: 378 EYDDEKLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKP 437
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPP-----GIVSQVP 418
LYV++AQRKE R+ L+ Q +Q + S + +G P Y PP G + P
Sbjct: 438 LYVSLAQRKEVRKQQLEAQMSQRS---QMRSQQIAAAGIPGAPYGAPPNPMYFGGAAAYP 494
Query: 419 PRPG--LMYQPLGLRTGWRANGFVPPTRPAF----QVSPL-------------------- 452
P G +MY P G+ G P RP + Q++P+
Sbjct: 495 PHGGRGMMYPPNGMPAGM-------PPRPRYAPPGQMAPMGMPGGAPYPPHPQDYPGYPV 547
Query: 453 -------------PVNPKH----NRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQ 495
P P H N N NG +P + S+ S + + Q
Sbjct: 548 GGPVPPVGGMRGIPGPPAHLGGPNPPNFRGGNGAPIPPMNGRGSAPSTNGPGSMRGAPPQ 607
Query: 496 QKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGER 555
+ G + +GR +G + LA SP +QKQ+LGE
Sbjct: 608 SRDGYAPSSLSGRAVSHRVSDIAPVG-------------LSPAALAKASPAEQKQMLGEA 654
Query: 556 LYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQE 615
LYP + + +P+ KITGM+LE++N+EL+ LLE+ +L KV+EAVQVL E K + E
Sbjct: 655 LYPQIAEKQPEKAGKITGMILEIENAELIHLLENRPALDAKVQEAVQVLDEYERKDAKGE 714
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/660 (40%), Positives = 371/660 (56%), Gaps = 73/660 (11%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P + SLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+L+ D
Sbjct: 167 PASQPNTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAAD 226
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA+E N++ + K RI WS RDP RK+G N+F+KNL E+IDN L + F FG+
Sbjct: 227 AERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGD 286
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVAT E G SKG+GFV + T ESA AAI+ +NG + DK ++VG + + DR +
Sbjct: 287 ILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKI 346
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
+++TNL++KNL ++ T E L E F KFG I S + DE+G RGFGFVN++N +
Sbjct: 347 DEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHES 406
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A++A++ VLY ARAQK+ ER+ L+ E+++ E LKY+G N+YVKN+DD
Sbjct: 407 ASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDD 466
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ DE+L+ F+ GTITS KVM+DEKG +KGFGFVCFSSP+EA+KAV +G ML KP
Sbjct: 467 EYDDEKLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKP 526
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPP-----GIVSQVP 418
LYV++AQRKE R+ L+ Q +Q + S + +G P Y PP G + P
Sbjct: 527 LYVSLAQRKEVRKQQLEAQMSQRS---QMRSQQIAAAGIPGAPYGAPPNPMYFGGAAAYP 583
Query: 419 PRPG--LMYQPLGLRTGWRANGFVPPTRPAF----QVSPL-------------------- 452
P G +MY P G+ G P RP + Q++P+
Sbjct: 584 PHGGRGMMYPPNGMPAGM-------PPRPRYAPPGQMAPMGMPGGAPYPPHPQDYPGYPV 636
Query: 453 -------------PVNPKH----NRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQ 495
P P H N N NG +P + S+ S + + Q
Sbjct: 637 GGPVPPVGGMRGIPGPPAHLGGPNPPNFRGGNGAPIPPMNGRGSAPSTNGPGSMRGAPPQ 696
Query: 496 QKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGER 555
+ G + +GR +G + LA SP +QKQ+LGE
Sbjct: 697 SRDGYAPSSLSGRAVSHRVSDIAPVG-------------LSPAALAKASPAEQKQMLGEA 743
Query: 556 LYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQE 615
LYP + + +P+ KITGM+LE++N+EL+ LLE+ +L KV+EAVQVL E K + E
Sbjct: 744 LYPQIAEKQPEKAGKITGMILEIENAELIHLLENRPALDAKVQEAVQVLDEYERKDAKGE 803
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/619 (41%), Positives = 366/619 (59%), Gaps = 49/619 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+ D RA+E
Sbjct: 48 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 107
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ + G+ RI WS RDP RK+G N+F+KNL +SIDN L + F FG+I+SCKV
Sbjct: 108 HLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKV 167
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
T E+GKS+G FV + T E+A+AAI+ +NG + DK++YVG + K +R+ + A+
Sbjct: 168 GTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQ 227
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+D +VT+ + FG S+ ++RDE G S+GFGFVN+++ + AR+A++
Sbjct: 228 FTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESARKAVD 287
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N + K LYA RAQ K+ERE L+ EEKR E K G N+Y+KN+DD+ D+
Sbjct: 288 ELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYIKNLDDEWDDDR 347
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+A F GTITS+KVMRD+ G+++GFGFVC+SSP+EA+KAV+ +G M+ KPLYVA+A
Sbjct: 348 LRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALA 407
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSL--YYTTPPGIVSQVPPRPGLMYQP 427
QRK+ R+ L+ Q AQ +G+P + Y P + PP PG QP
Sbjct: 408 QRKDVRRQALESQIAQR-----AQQRMQYGTGFPGMQGYMGQP---MYGYPPMPGYG-QP 458
Query: 428 LGLRTGWRANGFVPPTRPAFQVSPL---PVNPKHNRQNRGRMNGNMLPQVGA--HYMQQS 482
+ +PP R P+ P P++ Q+R R N N P G Y
Sbjct: 459 M---------PGMPPVR-----GPMMGYPGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPP 504
Query: 483 SQSAASSKDSSNQQKGGQSKYVP------NGRIRELNKGSGVSLGTFNSGGVMARKPD-- 534
+ + G + P NG + G+ G+ GG M +P
Sbjct: 505 QVPYPGAPGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSMPRGGQMPARPHEQ 564
Query: 535 ---------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
+ LA +P +QKQ+LGE LYPL+ + +P+L KITGMLLEMDN+ELL
Sbjct: 565 AAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLH 624
Query: 586 LLESPESLAVKVEEAVQVL 604
L+ES +L KV+EA++VL
Sbjct: 625 LVESQPALQEKVDEALRVL 643
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/614 (41%), Positives = 364/614 (59%), Gaps = 51/614 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL + +G+L+D F + + S+RVC+D S Y YVNF SP DA A+E
Sbjct: 39 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 98
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T L+GK +RI +S RDP RKSG AN+F+KNL SIDN L + F FG ++SCK+
Sbjct: 99 HLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKI 158
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A +G+SKG+GFVQFE EE+A AI+ LNG + DK++YVG F++ +R + + K+T
Sbjct: 159 ALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNXGNGSPKFT 218
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL T++ L F K+G I S ++ RD +G S+ FGFVNF + D A A+E +
Sbjct: 219 NVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHL 278
Query: 252 NGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
NG+ KV Y +AQ+K+ERE LR +FE++RK + K+KG N+Y+KN+DD V DE+L
Sbjct: 279 NGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGXNLYLKNLDDSVNDEKL 338
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS+ GTITS KVM D +G++KG GFV F +PEEA++A+N +G M+ RKPLYVA+AQ
Sbjct: 339 XELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQ 398
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANV-IPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
RKE+R+A LQ Q+AQ I A + SG P + P P
Sbjct: 399 RKEERKARLQAQFAQ----IRSPGAMTPLQSGVPGFHSGAP-------------RLAPQQ 441
Query: 430 LRTGWRANGFVPPTRPA---FQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHY-MQQSSQS 485
L G G +P T+PA FQ +P M P V ++ M Q
Sbjct: 442 LYFGQGTPGLIP-TQPAGYGFQQQLMP---------------GMRPGVAPNFIMPYQLQR 485
Query: 486 AASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM---------- 535
++GG S+ + + + + G + L F+ G+ D+
Sbjct: 486 QGQPGQRMGVRRGGNSQQM-QHQQQPASWGPVMPL-PFDVSGMPVSPMDIQRTGPVPMST 543
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L LA+ +P+ Q+ +LGE+L+PLVE+ + + K+TGMLLEMD +E+L L+ESP++L
Sbjct: 544 LASALASTTPDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVLHLIESPDALKN 603
Query: 596 KVEEAVQVLKLSEA 609
KV EA+ VL+ S +
Sbjct: 604 KVAEAMDVLRASSS 617
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASK 349
+ +++YV ++D + + +L F Q + S +V RD+ + + G+ +V F+SP++A+
Sbjct: 36 FANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATN 95
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A+ + L+ KP+ + + R
Sbjct: 96 ALEHLNFTPLNGKPIRIMFSHR 117
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 265/639 (41%), Positives = 369/639 (57%), Gaps = 85/639 (13%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV C
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVV----------------------------C-- 100
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 101 --DENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 157
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 158 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 217
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 218 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 277
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 278 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 336
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA ++ VI PSGY + YY PP
Sbjct: 337 QRKEERQAHLTNQYMQRMASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 394
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 395 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 439
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 440 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 499
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 500 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 557
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 558 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 596
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 123/247 (49%), Gaps = 47/247 (19%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P+ +L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSK---VLYAAR-------------------------AQKKAER--- 272
A RAL+ MN VI K ++++ R Q+ AER
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIE 124
Query: 273 ---------EQILRHQFEEKRKERILKYKG-----SNVYVKNIDDDVTDEELKAHFSQCG 318
++ +F+ RKER + +NVY+KN +D+ DE LK F + G
Sbjct: 125 KMNGMLLNDRKVFVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 183
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
S KVM DE G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ
Sbjct: 184 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 243
Query: 379 LQLQYAQ 385
L+ ++ Q
Sbjct: 244 LKRKFEQ 250
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 269/669 (40%), Positives = 383/669 (57%), Gaps = 86/669 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 86
Query: 73 KNHTQLH-------------------------------GKMLRISWSCRDPDARKSGVAN 101
N L+ GK +RI WS RDP RKSGV N
Sbjct: 87 MNGMLLNXXXXEASNIDSENVFPAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 146
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+F+KNL +SIDN L + F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +N
Sbjct: 147 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 205
Query: 162 GTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
G + D++++VGRF + +R L + A ++TN+++KN D+ +E L + F KFG S
Sbjct: 206 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 265
Query: 220 LLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQ 279
+ + DE+G S+GFGFV+F+ +DA++A++ MNG + K +Y RAQKK ER+ L+ +
Sbjct: 266 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 325
Query: 280 FEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFV 339
FE+ +++RI +Y+G N+YVKN+DD + DE L+ FS GTITSAKVM E G +KGFGFV
Sbjct: 326 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFV 384
Query: 340 CFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI- 398
CFSSPEEA+KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA + VI
Sbjct: 385 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVIN 444
Query: 399 ------PSGY----------PSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPP 442
PSGY + YY PP ++Q+ P P W A G
Sbjct: 445 PYQPAPPSGYFMAAIPQTQNRAAYY--PPSQIAQLRPSP-----------RWTAQG---- 487
Query: 443 TRP-AFQVSPLPVNPKHNRQNRGRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQK 497
RP FQ P + P R M + +P+V + S+Q+ ++
Sbjct: 488 ARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAA 547
Query: 498 GGQSKYVPNGRI--------RELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQK 549
+ VP + + LN V++ + V ++P + MLA+ P++QK
Sbjct: 548 TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQK 605
Query: 550 QILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEA 609
Q+LGERL+PL++ P L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +A
Sbjct: 606 QMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQA 665
Query: 610 KVSTQEAIH 618
K + Q+A++
Sbjct: 666 KEAAQKAVN 674
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 190/341 (55%), Gaps = 43/341 (12%)
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 2 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 61
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS-------- 185
E+G SKG+GFV FET+E+A AIE +NG + S+ V P+
Sbjct: 62 DENG-SKGYGFVHFETQEAAERAIEKMNGMLLNXXXXEASNI--DSENVFPAAERALDTM 118
Query: 186 ------------------PAAKYT---NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIAR 224
P+ + + N+F+KNLD + + L + FS FG I S +
Sbjct: 119 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 178
Query: 225 DENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKR 284
DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + + ERE L + +E
Sbjct: 179 DENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE-- 235
Query: 285 KERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSP 344
+NVY+KN +D+ DE LK F + G S KVM DE G +KGFGFV F
Sbjct: 236 --------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 287
Query: 345 EEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 288 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 328
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 268/636 (42%), Positives = 369/636 (58%), Gaps = 48/636 (7%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P T SLYVGDL DVTD +L+D F++ + SVR+C+D + +S YGYVNF +PHD
Sbjct: 18 PNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHD 77
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A +A++V N T L+ K +RI +S RDP RKSG AN+F+KNL +ID+ L + F FGN
Sbjct: 78 AAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGN 137
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCK+A G SKG+GFVQFE EESA +AI+ LNG + DK +YVG F +K DR
Sbjct: 138 ILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNAL 197
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
AK+ N+++KNL VT++ L F ++G I S ++ RD +G S+ FGFVNF+N D A
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAA 257
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
A+EA+NG K Y +A KK ERE L+ + E+ KE + K+ G+N+Y+KN+DD V
Sbjct: 258 EAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSV 317
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
TDE+L FS+ GT+TS K++RD +GI++G GFV FS+PEEA++A+ +G M+ KPLY
Sbjct: 318 TDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLY 377
Query: 366 VAIAQRKEDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPS-----LYYTTPPGIVSQ 416
VA AQ+KE+R+A LQ Q++Q MA I P+G P +Y PP +SQ
Sbjct: 378 VAPAQKKEERKARLQAQFSQVRPVTMAPI-APRLPFYPAGVPGMGQQIMYGQAPPAFISQ 436
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
G Y P L G R G +P+P M+ Q
Sbjct: 437 A----GFGY-PQQLVPGMRPGG-----------APMP-----------NFFMPMVQQGQQ 469
Query: 477 HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKG---SGVSLGTFNSGGVMARKP 533
+ A+ + + Q + P GR+ G G+ + G M
Sbjct: 470 GQRPGGRRGASPMQQLPHSLPMMQQQMHPRGRVYRYPTGRNPQGIPMPGVAGGTPM---- 525
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
L LA PEQQ+ +LGE LYPLVEK + AK+TGMLLEMD E+L L+ESPE+L
Sbjct: 526 QALATALANAPPEQQRTMLGEVLYPLVEKIEHAGAAKVTGMLLEMDQPEVLHLIESPEAL 585
Query: 594 AVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
KV EAV VL+ V+ Q++ P A +++N
Sbjct: 586 KTKVAEAVDVLR----NVAQQQSNSPTDQLASLSLN 617
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 263/616 (42%), Positives = 359/616 (58%), Gaps = 47/616 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL VTD +L++ FS+ + SVRVC+D ++ RS Y YVNF +P DA RA+E+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N L+GK +R+ +S RDP +R+SG AN+F+KNL ++ID+ L + F FGNI+SCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T E G+SKG GFVQ++ E+A +AI++LNG + DK +YVG F++K +R K+ N
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL T+E LV+ F +G I S +I +G SR FGF+NF +PDDA RA+E +N
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I K Y RAQKK+ERE L+ +FE+ K+ KY+G N+Y+KN+DD + D++L
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS G ITS K+MRD G++KG GFV FS+ + +G M+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTLPFIQ--LTEMNGKMISGKPLYVAFAQRK 397
Query: 373 EDRQAHLQLQYAQ--------HMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLM 424
EDR+A LQ Q++Q MA + P G Y PP I +PP+PG
Sbjct: 398 EDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPMAPLGQQLFYGQAPPAI---MPPQPGFG 454
Query: 425 YQPL---GLRTGW--RANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYM 479
+Q G+R G N FVP + Q P P R G G Q M
Sbjct: 455 FQQQLVPGMRPGGAHMPNYFVPVVQQG-QQGP---RPGIRRSGAGSAQGQQSAQPFQQQM 510
Query: 480 QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLG---TFNSGGVMARKPDM- 535
+G +Y P + ++ GV+ G +++ GG R +
Sbjct: 511 ---------------LPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMGGFPVRDAGLS 555
Query: 536 ------LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
L LA +PEQQ+ ILGE LYPLVE + + AK+TGMLLEMD +E+L LLES
Sbjct: 556 PAPIGTLTSALANANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLES 615
Query: 590 PESLAVKVEEAVQVLK 605
PE+L KV EA+ VL+
Sbjct: 616 PEALKSKVAEAMDVLR 631
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/609 (42%), Positives = 369/609 (60%), Gaps = 42/609 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+ D RA+E
Sbjct: 38 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERALE 97
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ + + RI WS RDP RK+G N+F+KNL E+IDN L + F FGN++SCKV
Sbjct: 98 QLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKV 157
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
AT E+G S+G+GFV +E ESA+AAI+++NG + DK++YVG + K +R + ++
Sbjct: 158 ATDENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKIDEQKSQ 217
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+F+KNLD V +E + +G+I S ++ +DE G SRGFGFVN+ N ++A +A+E
Sbjct: 218 FTNVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVE 277
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
++N + K ++AARAQKK ERE+ LR +E+ + E++ KY G N+YVKN+DDD DE
Sbjct: 278 SLNEVEVDGKKIFAARAQKKNEREEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDER 337
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L F GTITSAK+MRDEKG +KGFGFVCFSSP+EA+KAV+ G M+ KPLYV++A
Sbjct: 338 LVGEFEPFGTITSAKIMRDEKGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSLA 397
Query: 370 QRKEDRQAHLQLQYAQ-HMAGIEGSSANVIP-SGY---PSLYYTTPPGIVSQVPPRPGLM 424
QR++ R+ L+ Q AQ + ++ +A +P SG+ +YY PPG
Sbjct: 398 QRRDVRRQQLESQIAQRNQLRLQHQAAAGVPISGFMPGAPMYYQPPPGAYP--------- 448
Query: 425 YQPLGLRTGWRANGFVPPTRPAF----QVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQ 480
G R+ + GF PP + QV +P+ + +G M N P A
Sbjct: 449 ----GGRSMYGQPGFAPPRPRGYPAGQQVPGMPIPSPYGPPPQGYMPANYRPARPAR--A 502
Query: 481 QSSQSAASSKDSSNQQ-----KGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM 535
+Q S ++N + G + VP + K + G S V+A P
Sbjct: 503 NGAQVQGGSPTANNVRPAVPASGPRPAGVPVRPAQGAAKPAKQEAGGPLSASVLANAP-- 560
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
P +QKQ+LGE LYP + +P+L KITGMLLEM+NSELL LLE+ E+L
Sbjct: 561 ---------PAEQKQMLGEALYPKIFNIQPELAGKITGMLLEMENSELLFLLENEEALKS 611
Query: 596 KVEEAVQVL 604
KV+EA+ VL
Sbjct: 612 KVDEAIAVL 620
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 257/625 (41%), Positives = 370/625 (59%), Gaps = 33/625 (5%)
Query: 2 AVVPPTAT------TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCY 55
A+ PP++T T ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y
Sbjct: 24 AISPPSSTQAGPGGTGASLYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGY 83
Query: 56 GYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVR 115
YVN+L+ D RA+E N++ + G+ RI WS RDP RK+G N+F+KNL ESIDN
Sbjct: 84 AYVNYLNAADGERALEHLNYSAIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDESIDNKA 143
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L + F FG I+SCKV EDGKS+G FV ++T E+A+AAI+ ++G + DK+++VG
Sbjct: 144 LHDTFAAFGEILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHH 203
Query: 176 IKKSDRVLPSPA--AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
I K +R + A +TN+F+KN+D VTE+ + SKFG+ S+ ++ DE G S+GF
Sbjct: 204 IGKKERQSKAEEQRAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLDEEGKSKGF 263
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
GFVN+ + + A +A++ +N + + L+A RAQK+ ER+ LR EEKR+E K G
Sbjct: 264 GFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERDTELRKTIEEKRQEFDAKSAG 323
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
N+YVKN+DD+ D+ L+A F GTITS KVM+DE+G+++ FGFVC+SSPEEA+KAV+
Sbjct: 324 VNLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKDERGVSRNFGFVCYSSPEEATKAVSE 383
Query: 354 FHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGI 413
+G M+ KPLYVA+AQR+E R+ L+ Q AQ P G P Y P
Sbjct: 384 MNGKMIGSKPLYVALAQRREARRQALESQIAQRT----NQRVPYAPGGMPQGYMNQP--- 436
Query: 414 VSQVPPRPGLMYQPLGLRTGWRANGFVPPT---RPAFQVSPLPVNPKHNRQNRGRMNGNM 470
+ PP PG Y G+ G+ P RP + +P+ M
Sbjct: 437 MYGYPPMPG--YGQPGMMPMRPMMGYNPQMMQQRPRYPPAPMNQPGMGMPPMPYGMPPQQ 494
Query: 471 LP-QVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVM 529
+P + +Y + S++ ++ Q + NG + SG+ G+ M
Sbjct: 495 MPYAIPPNYPVRPGPGGISARPPTSAPAPAQGRI--NGGPSPVGYSSGLP-GSMPRQMPM 551
Query: 530 AR--------KPDMLNGMLAAPSP-EQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
AR + + L+ A +P +QKQ+LGE LYPL+ +P+L KITGMLLEMDN
Sbjct: 552 ARPGYDQVQPQQNKLSAQALARAPLAEQKQMLGEALYPLIGATQPELAGKITGMLLEMDN 611
Query: 581 SELLLLLESPESLAVKVEEAVQVLK 605
SELL L+ESP +L KV+EA++VL+
Sbjct: 612 SELLHLIESPPALLEKVDEALKVLE 636
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/639 (41%), Positives = 383/639 (59%), Gaps = 60/639 (9%)
Query: 6 PTATTPAS---------LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYG 56
PT TP S LYVGDL PDV++ EL++ F++ + S+RVC+D T +S Y
Sbjct: 11 PTIATPISGSSPYVAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYA 70
Query: 57 YVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRL 116
YVN+ + DA +A+E+ N T + GK +RI +S RDP RKSG AN+F+KNL +SIDN L
Sbjct: 71 YVNYGTHQDASQALELLNFTLVKGKPIRIMYSHRDPSIRKSGAANIFIKNLEKSIDNKAL 130
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
+ F FG I+SC+V + G SKG+GFVQFE EESA AIE +NG + D+++ V FI
Sbjct: 131 HDTFSAFGTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLINDRQVSVAPFI 190
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
+K +R + S + + N+++KNL T+E L + F+ FG I+S ++ RD +G S+ FGFV
Sbjct: 191 RKQERDMAS-SKNFNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKSKCFGFV 249
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
NF+N DDA A+E +NG +I K Y RAQKK+ERE L+ +FE+ RKE+ K++G N+
Sbjct: 250 NFENVDDAANAVENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNL 309
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
Y+KNIDD + DE+L+ F+ GT+TS KVM+ +G + G GFV FS+PEEA +AVN +G
Sbjct: 310 YLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNG 369
Query: 357 YMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQ 416
M+ KPLYVA+AQRKE+R+A LQ Q+AQ I +A + PS+Y+ P G+ Q
Sbjct: 370 KMVGSKPLYVALAQRKEERRARLQAQFAQMQ--IVAPNAPPMAPNPPSMYHPGPQGMGHQ 427
Query: 417 V---PPRPGLM---------YQPL--GLR--TGWRANGFVPPTRPAFQVSPLPVNPK--- 457
+ P PGL+ QP+ +R + N F+P RP Q+ PVN +
Sbjct: 428 MFYGQPAPGLLPSQANGFGYQQPMVPTMRPTSAGVPNYFMPVQRPGQQIQ-RPVNRRGGV 486
Query: 458 -HNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGS 516
+ + P+ G M + SQ + + DS+ Q G
Sbjct: 487 GPLQPQHHQPPPQQFPRGGNRSM-RYSQFSRTMPDSTMQ-------------------GF 526
Query: 517 GVSLGTFNSG--GVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGM 574
G+ +G N+ G+M LA+ SPE+Q+ +LGE+LYPLV++ + D K+TGM
Sbjct: 527 GM-MGAANASNIGLMPAL----ASALASASPEEQRVMLGEQLYPLVDRLEHDHAGKVTGM 581
Query: 575 LLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVST 613
LLEMD E+L L++ L KV EA+ VL++++ +S+
Sbjct: 582 LLEMDQPEVLHLIDLLRQLKAKVAEAMDVLRMAQGSISS 620
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/648 (40%), Positives = 364/648 (56%), Gaps = 46/648 (7%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P + SLYVG+L P VT+ L++ FS ++S+RVC+D+ T RS Y YVN+L+ D
Sbjct: 51 PASQPNTSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAAD 110
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA+E N++ + K RI WS RDP RK+G N+F+KNL E+IDN L + F FG+
Sbjct: 111 AERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGD 170
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA G SKG+GFV + T ESA AAI+ +NG + DK ++VG + + +R +
Sbjct: 171 ILSCKVAMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQAKI 230
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A +TNL++KNL ++VT E L E FSK+G + S + DE+G RGFGFVN++N +
Sbjct: 231 DEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHES 290
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A+EA++ +LY ARAQK+ ER+ LR E+++ E LKY+G N+Y+KN+DD
Sbjct: 291 ASKAVEALHDKDYKGNILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVNLYIKNLDD 350
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ DE+L+A F GTITS KVM+D+KG+++GFGFVCFS+P+EA+KAV +G ML KP
Sbjct: 351 EYDDEKLQAEFLPFGTITSCKVMKDDKGVSRGFGFVCFSAPDEATKAVAEMNGKMLGSKP 410
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHM---------AGIEGSSANVIPSGYPSLYY------- 407
LYV++AQRK+ R+ L+ Q +Q AGI G+ P+ +YY
Sbjct: 411 LYVSLAQRKDVRKQQLEAQMSQRAQMRSQQIAAAGIPGAPYGAPPN---QMYYGGAAAYP 467
Query: 408 ------TTPP-GIVSQVPPR-----PGLM----------YQPLGLRTGWRANGFVPPTRP 445
PP G+ + +PPR PG M YQP G+ A P
Sbjct: 468 PPGRGMAYPPNGMPAGMPPRPRYAPPGQMPPMGMPGAPHYQPPQGYPGYPAGDPAFPGAD 527
Query: 446 AFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQ---QKGGQSK 502
+ P P G M G P G + GG
Sbjct: 528 HAYPAGDPGYPAGGPAPAGSMRGMPGPPGGPAPAGFRGPGGPNGPPIGRNGMPPAGGMRG 587
Query: 503 YVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEK 562
P R ++ S +S + A + + LA SP +QKQ+LGE LYP + +
Sbjct: 588 APPQSRDPAYHQPSTLSGRATSHRAPEAPQTGLSPAALAKASPAEQKQMLGEALYPQIAE 647
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+P+ KITGM+LE+DN+ELL LLE+ +L KV EAVQVL E K
Sbjct: 648 KQPEKAGKITGMILEIDNAELLHLLENTTALDAKVSEAVQVLDEYERK 695
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 266/632 (42%), Positives = 362/632 (57%), Gaps = 62/632 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD-----A 66
ASLYVG+L P VT+ LF+ F+ ++AS+RVC+D+ T RS Y YVNF + D
Sbjct: 71 ASLYVGELDPSVTEAMLFELFNNIGAVASIRVCRDAVTRRSLGYAYVNFHNSSDVNLLTG 130
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
RA++ N+T + GK RI WS RDP RK+G N+F+KNL SIDN L + F FG+I
Sbjct: 131 ERALDELNYTLIKGKPCRIMWSQRDPSLRKTGTGNVFIKNLDASIDNKALHDTFTAFGSI 190
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LP 184
+SCKVA E G SKG+GFV ++T ESA AAI K +YVG + K DR
Sbjct: 191 LSCKVAVDELGNSKGYGFVHYKTSESAEAAI----------KHVYVGHHVSKKDRQSKFD 240
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
K+TN+++KN+D +++E E F KFG + SL ++ DENG SRGFGFVN++N +DA
Sbjct: 241 DMKLKFTNVYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRGFGFVNYENHEDA 300
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RA+E ++ + + LY RAQKK ERE+ LR Q+E+ + +++ KY G N++VKN+DDD
Sbjct: 301 ARAVEELHDTEYKDRKLYVCRAQKKHEREEELRKQYEQAKLDKLNKYNGINLFVKNLDDD 360
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ DE L+ FS GTITSAK+M D+ G +KGFGFVCFSSP+EA+KA+ + M+ KPL
Sbjct: 361 IDDERLRQEFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPDEATKAITEMNQRMVSGKPL 420
Query: 365 YVAIAQRKEDRQAHLQLQY-------AQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQV 417
YVA+AQRK+ R++ L+ Q Q A G S G P Y P G
Sbjct: 421 YVALAQRKDVRRSQLESQINARNQLRIQQQAAAAGMSPQYGMPGAPMFYGQGPTG----- 475
Query: 418 PPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAH 477
+ P G T + +P +PA +P P+ Q G+ NG + Q+
Sbjct: 476 -------FMPAGPMT----DRGMPFPQPAM----VPSRPRWVPQQSGQPNGQAISQI--- 517
Query: 478 YMQQSSQSAASSKDSSNQQKGG--QSKYVPN------------GRIRELNKGSGVSLGTF 523
Y S +A + +Q+ G + + +P+ G R GS GT
Sbjct: 518 YPGMSGYNAYLAIQGRSQRSGQVPRPQGIPSRPMMPMAMRPLLGSTRMYRVGSNTRNGT- 576
Query: 524 NSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSEL 583
G + + LAA SPE QKQ+LGE LYP V+ +P KITGMLLEMDNSEL
Sbjct: 577 KDGIDVGSDDLLTAASLAAASPENQKQMLGEVLYPKVQAQEPGFAGKITGMLLEMDNSEL 636
Query: 584 LLLLESPESLAVKVEEAVQVLKLSEAKVSTQE 615
L L+E +L KVEEA+ VLK + VS Q+
Sbjct: 637 LHLIEDDVALRAKVEEALIVLKEYQKGVSVQD 668
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 153/300 (51%), Gaps = 40/300 (13%)
Query: 97 SGVANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESA 153
S A+L+V L S+ L E+F N G + S C+ A + +S G+ +V F
Sbjct: 68 SNSASLYVGELDPSVTEAMLFELFNNIGAVASIRVCRDAVTR--RSLGYAYVNFHNSSDV 125
Query: 154 NA-----AIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEE 205
N A++ LN T + K I S R P+ + T N+F+KNLD+ + +
Sbjct: 126 NLLTGERALDELNYTLIKGKPCR----IMWSQR---DPSLRKTGTGNVFIKNLDASIDNK 178
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265
L + F+ FG I S +A DE G S+G+GFV++ + A A+ K +Y
Sbjct: 179 ALHDTFTAFGSILSCKVAVDELGNSKGYGFVHYKTSESAEAAI----------KHVYVGH 228
Query: 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
K +R+ +F++ +K K +NVYVKNID ++++ E + F + G +TS +
Sbjct: 229 HVSKKDRQS----KFDD------MKLKFTNVYVKNIDPEISEAEFEELFKKFGNVTSLSL 278
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
DE G ++GFGFV + + E+A++AV H + LYV AQ+K +R+ L+ QY Q
Sbjct: 279 SVDENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKHEREEELRKQYEQ 338
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 263/620 (42%), Positives = 358/620 (57%), Gaps = 50/620 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGD+HPDVT+ LF+ F+ +AS+RVC+D+ T RS Y YVNF + DA RA++
Sbjct: 76 ASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNLVDAERALD 135
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T + G RI WS RDP RKSGV N+FVKNL SIDN L + F FGNI+SCKV
Sbjct: 136 TMNFTCIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDPSIDNKALYDTFSLFGNILSCKV 195
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A G+SKG+G+V +ET E+A AI +NG + ++VG F K+ +R +T
Sbjct: 196 ANDPTGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFVGHFQKRQER---PDIEDWT 252
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEA 250
N ++KNL + T+ L +F FG++ S ++ +D N T+RGFGFVN+++ D A A+E
Sbjct: 253 NCYVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEG 312
Query: 251 MNG----SVIGSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
++G V G + LY +AQK+ ERE+ LR +F++ + ERI KY+G N+YVKN+DD +
Sbjct: 313 LSGKTFKGVNGVDLELYVGKAQKRTERERELRQKFDQLKLERINKYQGVNLYVKNLDDLL 372
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DEEL+ F+ GTITSA+VMRD G ++GFGFVCFS+PEEA+ AV +G ++ KP+Y
Sbjct: 373 QDEELREAFTNYGTITSARVMRDSTGNSRGFGFVCFSTPEEAATAVAEMNGKLITGKPVY 432
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY 425
VA AQRKE R+A L+ Q+AQ G+ + +P G P +Y P
Sbjct: 433 VAFAQRKEVRRAQLEAQHAQRATGVLVNRG--MPMGQPPMYGA------------PMFYA 478
Query: 426 QPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ--VGAHYMQQSS 483
QP + R P Q+ P V+P+ GRM G P A Y
Sbjct: 479 QPNQMPMQGRQAYMYPQ-----QMLPRGVHPRVPFGFGGRMPGAPGPAGFSMAGYGMPMQ 533
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIRELNKG-----SGVSLGTFNSGGVMARKPDMLNG 538
Q + G +PN R + G S LG SGGVM + G
Sbjct: 534 QQRQPRRGRQVPGPAGAPNGMPNRRNFKYTTGARNHPSREGLGNNMSGGVMPQGSSTPMG 593
Query: 539 MLAAPSPE-------------QQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
AP+ E QK ++GERLYPL+ + + +L KITGMLLEMDNSELL
Sbjct: 594 --GAPALEPLTSAALAAASPEAQKNMIGERLYPLIHRQQNELAGKITGMLLEMDNSELLH 651
Query: 586 LLESPESLAVKVEEAVQVLK 605
LLESP++L K++EA+QVL+
Sbjct: 652 LLESPDALDSKIQEAIQVLE 671
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/612 (40%), Positives = 374/612 (61%), Gaps = 26/612 (4%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL P+VT+G+L+D F++ + S+RVC+D + RS Y YVN+ + DA RA+E+
Sbjct: 38 SLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEM 97
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N + ++GK +RI +S RDP RKSG+AN+F+KNL +SIDN L + F FGNI+SCKVA
Sbjct: 98 LNFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVA 157
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+S+G+GFVQFE E++A +AI+ +NG + +K+++VG F+++ +R L AK+ N
Sbjct: 158 VDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGIAKFNN 217
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL T++ L F +FG I+S ++ RD G S+ FGFVNF+N DDA A+E +N
Sbjct: 218 VYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELN 277
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + K Y RAQKK+ERE LR +++++RKER KY+G N+Y+KN+DD + D++L+
Sbjct: 278 GKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRE 337
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F GTI S KVMRD +G +KG GFV FS+ EEA++A+ +G M+ KP+YVA+AQ++
Sbjct: 338 LFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKR 397
Query: 373 EDRQAH--LQLQYAQHM--AGIEGSSANVIP-------SGYPSLYYTTPPGIVSQVPPRP 421
++R+ Q Q+A G+ + A+ +P G P Y PP PP+P
Sbjct: 398 DERRRFNAAQAQFAPFRVPVGLGPAVASSVPMFHPGAGMGQPVFYGQHPPAF----PPQP 453
Query: 422 -GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQ 480
G YQ + +G R G P P + + + P+ ++ R G Q Q
Sbjct: 454 AGFAYQQ-QMMSGMRPGG---PQLPFYSLPIVQRQPQPQQRPNARRGGAPQQQQQQQQQQ 509
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGML 540
Q S + +G +Y P R + G + + S + ++L L
Sbjct: 510 QQPPQLMSQQVCC---RGRNFRYTPTSR-NSSDAGGMLPVPLEASETGILPPINVLASAL 565
Query: 541 AAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA 600
A+ SP Q+ +LGE+LYPLV+ + + K+TGMLLEMD +E+L L+ESPE+L KV EA
Sbjct: 566 ASASPTDQRVMLGEQLYPLVDNLEHECAGKVTGMLLEMDQTEVLHLIESPEALKAKVAEA 625
Query: 601 VQVLKLSEAKVS 612
+ VL+ AK+S
Sbjct: 626 MDVLR--NAKLS 635
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 270/658 (41%), Positives = 373/658 (56%), Gaps = 107/658 (16%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS+ Y YVNF P
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP R+SGV
Sbjct: 63 KDAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVV----------------------- 99
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
C E+G SKG+GFV FET E+A AIE +NGT + D++++VGRF + +R
Sbjct: 100 -----C----DENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREA 149
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 150 ELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 209
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+ N+YVKN+
Sbjct: 210 EDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 269
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DDD+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 270 DDDIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 328
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PS 404
KPLYVA+AQRKE+RQAHL +Y Q MA + VI PSGY +
Sbjct: 329 KPLYVALAQRKEERQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRA 388
Query: 405 LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ-- 461
YY PP ++Q+ P P W A G RP FQ P + P R
Sbjct: 389 AYY--PPSQIAQLRPSP-----------CWTAQG----ARPHPFQNKPGGIRPAAPRLPF 431
Query: 462 NRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQS------------KYVPNGRI 509
+ R + +P+V S+Q A ++S Q G + + VP +
Sbjct: 432 STMRPTSSQVPRV------MSTQRVA---NTSTQTVGPRPAAAAAAAATPAVRTVPRYKY 482
Query: 510 --------RELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLV 560
+ LN V T V + + L MLA+ P++QKQ+LGERL+P +
Sbjct: 483 AAGVRNPQQHLNAQPQV---TMQQSAVHVQGQETLTASMLASAPPQEQKQMLGERLFPPI 539
Query: 561 EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
+ P L KITGMLLE+DNSELL +LESP+SL KV+EAV VL+ +AK +TQ+A++
Sbjct: 540 QAMHPTLAGKITGMLLEIDNSELLHMLESPQSLRSKVDEAVAVLQAHQAKEATQKAVN 597
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/618 (41%), Positives = 360/618 (58%), Gaps = 79/618 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLH DVTD +LF+ F++ +A++R+C+D+TT RS Y YVN+ +P DA RA++
Sbjct: 8 SSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALD 67
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + GK RI WS RDP RKSGV N+F+KNL +S+D+ L + F FGNI+SCKV
Sbjct: 68 TLNNTLVKGKACRIMWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFGNILSCKV 127
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
T E SKG GFV +E+++SA+ AI +NG + D++++VG F K S + KYT
Sbjct: 128 VTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPF-KSSKERGQTQELKYT 186
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL DV EE L + +GKI +L I DE S+GFGF NF+ PD+A+ +EA
Sbjct: 187 NVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAKNCVEAE 246
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG + KV+Y RAQKK ERE L+H+FE KY+G N+Y+KNIDD + ++L+
Sbjct: 247 NGKLFHGKVIYVGRAQKKMEREAELKHKFE-------TKYQGVNLYIKNIDDSIDSDKLR 299
Query: 312 AHFSQCGTITSAKVMRDEKGI-NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ GTITSAKVMRD+K +KGFGFVC+++P+EASKAV HG M+ KPLYVA AQ
Sbjct: 300 STFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNKPLYVAFAQ 359
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY---PSLYYTTPPGIVSQVPPRPGLMYQP 427
RKE R+ HL+ Q+ + +G+ +PS Y P Y P + Q+ PRP
Sbjct: 360 RKEIRRQHLEAQHNK----FKGNRIQPVPSMYAGGPMFYNQGMPVVYPQMMPRP------ 409
Query: 428 LGLRTGWRANGFVP-----PTRPAF----QVSP--LPVNPKH-----NRQNRGRMNGNML 471
R GW N VP P +P + Q P P +P+ N++ RG M+ N
Sbjct: 410 ---RPGW--NQPVPQGQGYPMQPNYPIRNQRGPGGAPNHPRGPGGAPNQRPRGPMDPNQ- 463
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
QV Q + + A+++++ V +
Sbjct: 464 -QVPQAANPQPTPAPATAQEAV---------------------------------AVPSE 489
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE-MDNSELLLLLESP 590
+P + + A EQQ LGE LYPL+ +PD KITGMLL+ + EL L +
Sbjct: 490 QPQITLEYVEALPREQQNPFLGELLYPLIHASQPDAAGKITGMLLDSLTVQELFELAQRA 549
Query: 591 ESLAVKVEEAVQVLKLSE 608
+ L K++EA++VL +S+
Sbjct: 550 DKLGEKIKEALEVLSVSQ 567
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD---EKGINKGFGFVCFSSPEEA 347
+ S++YV ++ DVTD +L F+Q G + + ++ RD + +N + +V + +P +A
Sbjct: 5 FSSSSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLN--YAYVNYHNPADA 62
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ K + +QR
Sbjct: 63 ERALDTLNNTLVKGKACRIMWSQR 86
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 254/589 (43%), Positives = 356/589 (60%), Gaps = 53/589 (8%)
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
S DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F
Sbjct: 97 SRQDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 156
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 157 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 215
Query: 182 V--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 216 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFE 275
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVK
Sbjct: 276 RHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVK 335
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 336 NLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 394
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY---------- 402
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY
Sbjct: 395 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 454
Query: 403 PSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ 461
+ YY PP ++Q+ P P W A G RP FQ P + P R
Sbjct: 455 RAAYY--PPSQIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRP 497
Query: 462 NRGRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI-------- 509
M + +P+V + S+Q+ ++ + VP +
Sbjct: 498 PFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQ 557
Query: 510 RELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVA 569
+ LN V++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L
Sbjct: 558 QHLNAQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAG 615
Query: 570 KITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 616 KITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 664
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 164/289 (56%), Gaps = 21/289 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 136 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 193
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG
Sbjct: 194 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 253
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 254 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 313
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 314 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 372
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 373 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 421
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 228 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 286
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 287 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 345
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 346 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 404
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 405 QRKEER-----QAHLTNQYMQRMAS 424
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 17/149 (11%)
Query: 231 RGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILK 290
R F + DA RAL+ MN VI K + +Q R+ LR K
Sbjct: 88 RDLTFYYSSSRQDAERALDTMNFDVIKGKPVRIMWSQ----RDPSLR------------K 131
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
N+++KN+D + ++ L FS G I S KV+ DE G +KG+GFV F + E A +A
Sbjct: 132 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERA 190
Query: 351 VNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
+ +G +L+ + ++V + +++R+A L
Sbjct: 191 IEKMNGMLLNDRKVFVGRFKSRKEREAEL 219
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/577 (44%), Positives = 354/577 (61%), Gaps = 33/577 (5%)
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
P DA RA+E N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F
Sbjct: 131 PADAERALETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSA 190
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGNI+SCKV E G SKG+GFV FET ++A AI+ +NG + D++++VGRF + +R
Sbjct: 191 FGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKERE 249
Query: 183 --LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
L + A ++TN+++KN D+ + L F KFG S+ + DE+GTS+GFGFVNF+
Sbjct: 250 AELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFER 309
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+DA++A+E MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN
Sbjct: 310 HEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKN 369
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 370 LDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 428
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGYPSLYYTTPPGIVS 415
KPLY+A+AQRKE+RQAHL QY Q MA + V+ PSGY + T P +
Sbjct: 429 TKPLYIALAQRKEERQAHLTNQYMQRMASVRAVPNPVLNPYQPPSGY---FMTAIPQTQN 485
Query: 416 QVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRM--NGNMLP 472
+ P PL W + G RP FQ P + P R G M + LP
Sbjct: 486 RPAYYPASQMAPLRPSPRWTSQG----ARPHPFQNLPGAIRPAAARPPFGSMRPTSSQLP 541
Query: 473 Q-VGA--HYMQQSSQS-------AASSKDSSNQQKGGQSKYVPNGR--IRELNKGSGVSL 520
+ VGA + S+Q+ +A + + + G Q KY R +N S+
Sbjct: 542 RGVGASQRIVNSSTQALGPPLGASAGAAGAPGVRMGPQYKYAAGVRNPQHHVNVQPQASV 601
Query: 521 GTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
+ V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DN
Sbjct: 602 QQ-PAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDN 659
Query: 581 SELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
SELL +LESPESL KV+EAV VL+ +AK + Q+A+
Sbjct: 660 SELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAV 696
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L F +F SV+V D + G S +G+VNF DA +A+E
Sbjct: 261 NVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDES-GTSKGFGFVNFERHEDAQKAVEE 319
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 320 MNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGV-NLYVKNLDDGIDDER 378
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +Y+
Sbjct: 379 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALA 437
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 438 QRKEER-----QAHLTNQYMQRMAS 457
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/620 (41%), Positives = 367/620 (59%), Gaps = 57/620 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL +V + +LF F+ + S+RVC+D T RS Y YVNF++P DA A+E
Sbjct: 6 ASLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETN-RSLGYAYVNFVNPQDAANAME 64
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T L+GK +R+ +S RDP RKSG AN+F+KNL SIDN L + F FG ++S KV
Sbjct: 65 HLNFTPLNGKSIRVMFSNRDPSIRKSGYANVFIKNLDISIDNKTLHDTFAAFGFVLSSKV 124
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A G+SKG+GFVQF+ EESA AI+ LNG + DK++YVG F+ + +R + K+T
Sbjct: 125 AVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQERAQVDGSPKFT 184
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KN T+E L + FS +G I S ++ +D +G SR FGFVNF++PD A A+E +
Sbjct: 185 NVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERL 244
Query: 252 NGSVIG-SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
NG+ + KVLY RAQ+KAERE L+ +FE +R + KY G+N+YVKN+D ++ D++L
Sbjct: 245 NGTTVNDDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNINDDKL 304
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
K FS+ GTITS KVM + G +KG+GFV FS+P A++A++ +G M+ R+PLYVA+AQ
Sbjct: 305 KELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYVAVAQ 364
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP-------------PGIVSQV 417
RKE+R+A L+ Q++Q A + +P+G P + P P +V+
Sbjct: 365 RKEERKALLEAQFSQMHALY---AITHLPTGIPVYHPGAPRHGPQALHYGQGAPSLVAPQ 421
Query: 418 PPRPGLMYQPL-GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
P G Q L G+ G N F+ P QV P N N+ +N + G
Sbjct: 422 PTGYGFQQQLLPGMHPGVAPN-FIMPYHRQRQVPPRLRNLHRNQML--HLNSSQ----GF 474
Query: 477 HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELN----KGSGVSLG-TFNS--GGVM 529
YM N Q G VP+G + + GSG+S T+N GG +
Sbjct: 475 GYM-------------GNGQNGMDPSVVPHGIVAPMMPLPFDGSGISAAPTYNQHPGGSL 521
Query: 530 ARKPDMLNGMLAAPSPEQQKQILGERLYPLVEK-----HKPDLVAKITGMLLEMDNSELL 584
+ + LA+ +PE Q +L E LYPLV++ H+ + K+TGMLLEMD SE++
Sbjct: 522 S---NTFASALASATPENQHLMLAEHLYPLVDEITKNHHQTE---KVTGMLLEMDQSEVI 575
Query: 585 LLLESPESLAVKVEEAVQVL 604
L ESPE L +KV EA+Q L
Sbjct: 576 HLTESPEDLKIKVFEAMQAL 595
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 161/289 (55%), Gaps = 17/289 (5%)
Query: 96 KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANA 155
+SG A+L+V +L ++D +L ++F G I S +V E +S G+ +V F + A
Sbjct: 2 QSGNASLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAAN 61
Query: 156 AIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFG 215
A+E+LN T + K I V S+R + Y N+F+KNLD + + L + F+ FG
Sbjct: 62 AMEHLNFTPLNGKSIRV----MFSNRDPSIRKSGYANVFIKNLDISIDNKTLHDTFAAFG 117
Query: 216 KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI 275
+ S +A D G S+G+GFV FDN + A+ A++ +NG +I K +Y + ER Q+
Sbjct: 118 FVLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQERAQV 177
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG 335
K +NVYVKN + TDE+L+ FS GTITSA VM+D G ++
Sbjct: 178 DGSP------------KFTNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRC 225
Query: 336 FGFVCFSSPEEASKAVNTFHGYMLH-RKPLYVAIAQRKEDRQAHLQLQY 383
FGFV F SP+ A AV +G ++ K LYV AQRK +R+A L+ ++
Sbjct: 226 FGFVNFESPDSAVAAVERLNGTTVNDDKVLYVGRAQRKAEREAELKARF 274
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/602 (41%), Positives = 353/602 (58%), Gaps = 36/602 (5%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
+ T ASLYVG+L P VT+ +LF+ FS ++++RVC+D+ + +S Y YVNF S D
Sbjct: 43 SETLASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGE 102
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
+A+E N+T + GK RI WS RDP R++G N+F+KNL +IDN L + F FG I+
Sbjct: 103 KALEELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKIL 162
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPS 185
SCK+AT E+G SKG GFV +E ESA AAIEN+NG + D +YVG + K DR +
Sbjct: 163 SCKIATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRE 222
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A +TN+++KN++ + E+ L E FS FG I+S+ +++DE+G SRGFGFVNF+ +DA
Sbjct: 223 LIANFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAV 282
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+E +N I + LY RAQKK+ER + L+HQ+E R+E++ KY+G N++VKN+DD +
Sbjct: 283 KAVEELNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSI 342
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
D +L+ F GTITSAKVM D+ G +KGFGFVC+SSPEEA+KA+ H M+ KPLY
Sbjct: 343 DDAKLEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLY 402
Query: 366 VAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGL 423
VA+AQRKE R++ L Q+Q M + ++ + ++Y PG + PG
Sbjct: 403 VALAQRKEVRRSQLSQQIQARNQMRMQQAAAQGGMGQFVAPMFYGQNPGFLP-----PGA 457
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
P P RP V PV+P Q R NG +P YMQ
Sbjct: 458 RGAPFAAPGQQMMMQQGMP-RPGQGV---PVSPG---QFRVGPNGQPVPM----YMQ--- 503
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAP 543
+ + Q +Y GR + +G G G V + L +L
Sbjct: 504 ---PVFNEYPQNGRLPQQRYYQGGRPGQQPPQAG-PRGKREDGAVPS-----LAQVLPQF 554
Query: 544 SPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
PEQQK++LGE LYPL+ + P+ KITGM+LEMDN ++L LLE + + EE
Sbjct: 555 PPEQQKRMLGEELYPLIVATGKAQDPEAAGKITGMMLEMDNQQILALLEDRDLFNSQFEE 614
Query: 600 AV 601
A+
Sbjct: 615 AL 616
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/606 (42%), Positives = 352/606 (58%), Gaps = 57/606 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD+T+ L+D F + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP R+SG N+F+KNL SIDN L + F +FGNI+SCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+G SKG GFV +E++ESA AIE +NG + DK+++V RF ++DR+ A
Sbjct: 122 VCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKH 180
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRAL 248
+TNLF+KNL + L++ F +FG++ S + DE G S+ GF++F D A A+
Sbjct: 181 FTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAV 240
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
E M+ I K LY RAQKKAER L+ ++E+ ++ERI +Y+G N+YVKN+DD + DE
Sbjct: 241 EIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDE 300
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F Q G ITSAKV+ D G +KGFGFVCFSSPEEA+KAV +G + KPLYV +
Sbjct: 301 GLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGL 360
Query: 369 AQRKEDRQAHLQLQYAQHMA-GIEGSS---ANVIPSGYPSLYYTTPPGIVSQVPPR---P 421
AQRKEDR+AHLQ QY Q ++ GI + V+ + PPR P
Sbjct: 361 AQRKEDRKAHLQQQYMQRVSTGIRMQAFMGNQVVNQNFQ--------------PPRYILP 406
Query: 422 GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQ 481
+ QP+ + P P + +P P Q G + G M Q G +
Sbjct: 407 TMQGQPVQM---------FPQGTPMVRATPRWAPPNQRVQMPGMVRGRMAQQGGPQFRLT 457
Query: 482 SSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDML-NGML 540
S N Q + +P ++ N+ +G + P+ L + ML
Sbjct: 458 PS--------VRNVQIPSEVIQMP-PQMPHQNQPAG------------DQAPETLTSSML 496
Query: 541 AAPSPEQQKQILGERLYPLVEKHKP-DLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
A +P++QKQ+LGERL+PL++ DL KITGMLLE+DNSELL +L++ E L KV+E
Sbjct: 497 ANANPQEQKQMLGERLFPLIQSMAATDLAGKITGMLLEIDNSELLHMLDNRELLKSKVDE 556
Query: 600 AVQVLK 605
AV VLK
Sbjct: 557 AVLVLK 562
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/616 (40%), Positives = 373/616 (60%), Gaps = 27/616 (4%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL P+VT+G+L+D F++ + S+RVC+D + RS Y YVN+ + DA RA+E+
Sbjct: 38 SLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEM 97
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N + ++GK +RI +S RDP RKSG+AN+F+KNL +SIDN L + F FGNI+SCKVA
Sbjct: 98 LNFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVA 157
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+S+G+GFVQFE E++A +AI+ +NG + +K+++VG F+++ +R L K+ N
Sbjct: 158 VDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGGVTKFNN 217
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL T++ L F +FG I+S ++ RD G S+ FGFVNF+N DDA A+E +N
Sbjct: 218 VYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELN 277
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + K Y RAQKK+ERE LR +++++RKER KY+G N+Y+KN+DD + D++L+
Sbjct: 278 GKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRE 337
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F GTI S KVMRD +G +KG GFV FS+ EEA++A+ +G M+ KP+YVA+AQ++
Sbjct: 338 LFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKR 397
Query: 373 EDRQAH--LQLQYAQHM--AGIEGSSANVIP-------SGYPSLYYTTPPGIVSQVPPRP 421
++R+ Q Q+A G+ + A+ +P G P Y PP PP+P
Sbjct: 398 DERRRFNAAQAQFAPFRVPVGLGPAVASSVPMFHPGAGMGQPVFYGQHPPAF----PPQP 453
Query: 422 -GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQ 480
G YQ + +G R G P P + + + P+ ++ R G Q Q
Sbjct: 454 AGFAYQQ-QMMSGMRPGG---PQLPFYSLPIVQRQPQPQQRPNARRGGAPQQQQQQQQQQ 509
Query: 481 QSSQSAASSKDSSNQQ----KGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDML 536
Q Q Q +G +Y P R + G + + S + ++L
Sbjct: 510 QQQQQQQQQPPQLMSQQVCCRGRNFRYTPTSR-NSSDAGGMLPVPLEASETGILPPINVL 568
Query: 537 NGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
LA+ SP Q+ +LGE+LYPLV+ + + K+TGMLLEMD +E+L L+ESPE+L K
Sbjct: 569 ASALASASPTDQRVMLGEQLYPLVDNLEHECAGKVTGMLLEMDQTEVLHLIESPEALKAK 628
Query: 597 VEEAVQVLKLSEAKVS 612
V EA+ VL+ AK+S
Sbjct: 629 VAEAMDVLR--NAKLS 642
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/594 (42%), Positives = 358/594 (60%), Gaps = 55/594 (9%)
Query: 57 YVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRL 116
+ NFL A RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L
Sbjct: 21 FENFL--LAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKAL 78
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
+ F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF
Sbjct: 79 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 137
Query: 177 KKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +R L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFG
Sbjct: 138 SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFG 197
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS 294
FV+F+ +DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G
Sbjct: 198 FVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV 257
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
N+YVKN+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV
Sbjct: 258 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEM 316
Query: 355 HGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----- 402
+G ++ KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY
Sbjct: 317 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAI 376
Query: 403 -----PSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNP 456
+ YY PP ++Q+ P P W A G RP FQ P + P
Sbjct: 377 PQTQNRAAYY--PPSQIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRP 419
Query: 457 KHNRQNRGRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--- 509
R M + +P+V + S+Q+ ++ + VP +
Sbjct: 420 AAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAG 479
Query: 510 -----RELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHK 564
+ LN V++ + V ++P + MLA+ P++QKQ+LGERL+PL++
Sbjct: 480 VRNPQQHLNAQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMH 537
Query: 565 PDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
P L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 538 PTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 591
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 164/289 (56%), Gaps = 21/289 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 63 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 120
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG
Sbjct: 121 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 180
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 181 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 240
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 241 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 299
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 300 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 348
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 155 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 213
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 214 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 272
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 273 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 331
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 332 QRKEER-----QAHLTNQYMQRMAS 351
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/585 (43%), Positives = 354/585 (60%), Gaps = 53/585 (9%)
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
+ A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLY 406
LYVA+AQRKE+RQAHL QY Q MA + VI PSGY + Y
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 358
Query: 407 YTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGR 465
Y PP ++Q+ P P W A G RP FQ P + P R
Sbjct: 359 Y--PPSQIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFST 401
Query: 466 MN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELN 513
M + +P+V + S+Q+ ++ + VP + + LN
Sbjct: 402 MRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLN 461
Query: 514 KGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITG 573
V++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITG
Sbjct: 462 AQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITG 519
Query: 574 MLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
MLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 520 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 564
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 164/289 (56%), Gaps = 21/289 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 93
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG
Sbjct: 94 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 153
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 154 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 213
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 214 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 272
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 273 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 321
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 128 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 186
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 187 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 245
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 246 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 304
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 305 QRKEER-----QAHLTNQYMQRMAS 324
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/593 (42%), Positives = 359/593 (60%), Gaps = 56/593 (9%)
Query: 58 VNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ 117
++FL+ A RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L
Sbjct: 1 MSFLA---AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALY 57
Query: 118 EMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIK 177
+ F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF
Sbjct: 58 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 116
Query: 178 KSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF 235
+ +R L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGF
Sbjct: 117 RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGF 176
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN 295
V+F+ +DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N
Sbjct: 177 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN 236
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
+YVKN+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +
Sbjct: 237 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 295
Query: 356 GYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY------ 402
G ++ KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY
Sbjct: 296 GRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIP 355
Query: 403 ----PSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPK 457
+ YY PP ++Q+ P P W A G RP FQ P + P
Sbjct: 356 QTQNRAAYY--PPSQIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPA 398
Query: 458 HNRQNRGRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI---- 509
R M + +P+V + S+Q+ ++ + VP +
Sbjct: 399 APRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGV 458
Query: 510 ----RELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKP 565
+ LN V++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P
Sbjct: 459 RNPQQHLNAQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHP 516
Query: 566 DLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 517 TLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 569
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 164/289 (56%), Gaps = 21/289 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 41 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 98
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG
Sbjct: 99 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 158
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 159 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 218
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 219 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 277
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 278 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 326
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 133 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 191
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 192 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 250
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 251 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 309
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 310 QRKEER-----QAHLTNQYMQRMAS 329
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/617 (40%), Positives = 355/617 (57%), Gaps = 54/617 (8%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
A T ASLYVG+L+P V + L++ FS ++S+RVC+D+ T +S Y YVN+ D
Sbjct: 46 VAVTSASLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDG 105
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
RA+E N++ + G+ RI WS RDP R++G N+F+KNL IDN L + F FG I
Sbjct: 106 ERALEQLNYSLIDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPDIDNKALHDTFSAFGRI 165
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LP 184
+SCKVAT E G+SK GFV +ET E+A+AAIEN+NG ++ D+ ++VG+ I K DRV
Sbjct: 166 LSCKVATDEHGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFVGKHISKKDRVAKFE 225
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A +TN+F+KN SD TE L F +GKI SL +D G S+GFGF+NF+N D A
Sbjct: 226 EMKANFTNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAA 285
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+A+E +N + + +Y RAQKK ER + L+ Q+E R E++ KY+G N++VKN+DD
Sbjct: 286 VKAVEELNDKEVNGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVNLFVKNLDDS 345
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+T E L+ F GTITSAKVM DE G +KGFGFVCFS+PEEA+KA+ + M+ KPL
Sbjct: 346 LTSEMLEEEFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKPL 405
Query: 365 YVAIAQRKEDRQAHLQLQY-AQHMAGIEGSSANVIPSGY-PSLYYTTPPGIVSQVPPRPG 422
YVA+AQRK+ R++ L+ Q A++ ++ ++A IP + P ++Y PG PG
Sbjct: 406 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAGIPGQFMPPMFYGQQPGFF------PG 459
Query: 423 LMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQS 482
R NG P P + + P + R NG +P G +
Sbjct: 460 ----------NGRNNGPFPGPNPQMMMPRGQMPPPQGQWPRAGPNGQPVPVYGMPPVYND 509
Query: 483 SQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAA 542
+ QQ+G Y PN R N+ G R+ L ++A+
Sbjct: 510 FNGP-----NGRQQRG----YFPNNR----NQKGG-------------RRD--LAAIIAS 541
Query: 543 PSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
P+QQK+ILGE LYP + + +P+ KITGM+L++DN E+L LLE E E
Sbjct: 542 APPDQQKRILGEELYPKIVSTGKAQEPEAAGKITGMMLDLDNQEILALLEDDELFNNHFE 601
Query: 599 EAVQVLKLSEAKVSTQE 615
+A+ + E K S++E
Sbjct: 602 DALTAYE--EYKKSSEE 616
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/611 (41%), Positives = 355/611 (58%), Gaps = 48/611 (7%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
AV+PP + ASLYVGDL V + +L FS+ +A+VRVC+D +G S YGYVNF
Sbjct: 26 AVLPPLGSM-ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFY 84
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
S +A RA+E N T L GK +R+ +S RDP RKSG ANLFVKNL +ID+ L E+F
Sbjct: 85 SRQEATRALEALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFS 144
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+FG I+SCKVAT G+SKG+GFVQ+ETEESA AAI LNG +++++VG +++ DR
Sbjct: 145 SFGAILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDR 204
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ K+TN+++KNL ++ +E+ L ++F+ FG+I S ++ RD +G S+ FGFVNF P
Sbjct: 205 EV-----KFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKP 259
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+ A A+E NG IG K LY RAQKK ER+ L+ +F R ++ K G N+Y+KNI
Sbjct: 260 EFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNI 319
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE LK F + G + S KVM D +G +KG GFV F++ E +A+N +G ++ +
Sbjct: 320 DDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGK 379
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 421
KPLYV +AQ KE+R+A L +AQ + S Y P + P P
Sbjct: 380 KPLYVGLAQPKEERKAMLMAHFAQRNLAMAASQ------------YAGPQQVYFGHPSSP 427
Query: 422 GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQ 481
G + P G G+ + FVP P +SP+ + P HN Q R R G A Y QQ
Sbjct: 428 GPIAPPQGAVFGFPQH-FVPGMGP---ISPV-MMPPHNMQ-RPRYPGP------APYRQQ 475
Query: 482 SSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLN---G 538
+ A++ N + G P F G A + ++
Sbjct: 476 QAMIHANANHMPNARPGPYPAMPPQ---------------AFPGAGATAWQQHAVSRTTT 520
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
+A+ P Q QILG +LY LVE+ + D K+TGMLLEMD +E+L LL SPE+L KV
Sbjct: 521 AVASAGPADQHQILGNKLYALVEQLERDHAGKVTGMLLEMDKAEILQLLRSPEALRAKVR 580
Query: 599 EAVQVLKLSEA 609
EA+ VL+ ++A
Sbjct: 581 EAMAVLQRTKA 591
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 244/601 (40%), Positives = 354/601 (58%), Gaps = 19/601 (3%)
Query: 28 LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87
L++ FS + S+RV +D T RS Y VNF P DA RA++ N + GK +RI W
Sbjct: 2 LYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQF 147
S RDP R+SGV N+F+KNL ++IDN L + F FGNI+SCKV + E+G SKGHGFV F
Sbjct: 62 SQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHF 120
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEE 205
ETEE+A AIE +NG + D++++VGRF + +R L + ++TN+++KN + +E
Sbjct: 121 ETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDE 180
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265
L F +FG+I S+ + DE G S+GFGFV+F+ +DA++A++ MNG + K +Y R
Sbjct: 181 TLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGR 240
Query: 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
AQKK +R L+H+FE+ +++ ++Y+G N+YVKN+DD + DE L+ FS GTITS KV
Sbjct: 241 AQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKV 300
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
M E G +KGFGFVCFSSPEEA+KAV+ +G ++ KPLYVA+AQRKE+RQAHL QY Q
Sbjct: 301 M-TEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQ 359
Query: 386 HMAGIEGSSANVIPSGYPSLYYTTP--PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPT 443
MA + V P S Y+ P + VP P + QP W A G P
Sbjct: 360 RMASVRSGPNPVNPYQPASSSYSVAAVPQTQNCVPCCPSQIAQPRP-SARWIAQGSRPHP 418
Query: 444 RPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKY 503
P + P P+ + R + + + AH + +S + + +
Sbjct: 419 FPNVPGAIHPAAPRSSLTTV-RPSSSHVQVTTAHRITNTSAQITGQRPAP----ASSATA 473
Query: 504 VPNGRIRELNKGSGVSLGTFNSGGVMARKPDML-------NGMLAAPSPEQQKQILGERL 556
P I + +GV + +A++P + + +P++ KQ+LGERL
Sbjct: 474 TPVHSIPQYKYAAGVQNSQQHLNAQLAQQPAVCIQGQEPWTASMLVTAPQEPKQMLGERL 533
Query: 557 YPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEA 616
+PL++ P L KITGMLL++DNSE L +LESP S + EEAV L+ + K + Q+A
Sbjct: 534 FPLIQAMHPTLAGKITGMLLDIDNSEPLRMLESPVSRCSRAEEAVATLQAHQVKEAAQKA 593
Query: 617 I 617
+
Sbjct: 594 V 594
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/588 (43%), Positives = 356/588 (60%), Gaps = 54/588 (9%)
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
PH A RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F
Sbjct: 230 PH-AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 288
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 289 FGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 347
Query: 183 --LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 348 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER 407
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN
Sbjct: 408 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 467
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 468 LDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 526
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------P 403
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY
Sbjct: 527 TKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNR 586
Query: 404 SLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQN 462
+ YY PP ++Q+ P P W A G RP FQ P + P R
Sbjct: 587 AAYY--PPSQIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPP 629
Query: 463 RGRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------R 510
M + +P+V + S+Q+ ++ + VP + +
Sbjct: 630 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQ 689
Query: 511 ELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
LN V++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L K
Sbjct: 690 HLNAQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGK 747
Query: 571 ITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
ITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 748 ITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 795
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 164/289 (56%), Gaps = 21/289 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 267 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 324
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG
Sbjct: 325 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 384
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 385 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 444
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 445 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 503
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 504 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 552
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 359 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 417
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 418 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 476
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 477 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 535
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 536 QRKEER-----QAHLTNQYMQRMAS 555
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 256/586 (43%), Positives = 352/586 (60%), Gaps = 71/586 (12%)
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 2 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 61
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYT 191
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A ++T
Sbjct: 62 DENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT 120
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++ M
Sbjct: 121 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE L+
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 240
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQR
Sbjct: 241 KEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 299
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPGIV 414
KE+RQAHL QY Q MA + VI PSGY + YY PP +
Sbjct: 300 KEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPSQI 357
Query: 415 SQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GNML 471
+Q+ P P W A G RP FQ P + P R M + +
Sbjct: 358 AQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV 402
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKG-----------------GQSKYVPNGR--IREL 512
P+V S+Q A ++S Q G Q KY P R + L
Sbjct: 403 PRV------MSTQRVA---NTSTQTMGPRPAAAAAAATPAVRTVAQYKYAPGVRNPQQHL 453
Query: 513 NKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKIT 572
N V++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KIT
Sbjct: 454 NAQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKIT 511
Query: 573 GMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
GMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 512 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 557
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 164/289 (56%), Gaps = 21/289 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 86
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 146
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 147 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 206
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 207 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 265
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 314
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 121 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 179
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 238
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 239 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 297
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 298 QRKEER-----QAHLTNQYMQRMAS 317
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 270/676 (39%), Positives = 367/676 (54%), Gaps = 89/676 (13%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E
Sbjct: 48 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 107
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 108 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 167
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR A
Sbjct: 168 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 227
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNLD +++EE + F KFG+I S ++RD+ G SRGFGFVN+ D A+ A++
Sbjct: 228 FTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MN + + LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+ DD+ DE+
Sbjct: 288 EMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEK 347
Query: 310 LKAHFSQCGTITSAKVMRDEK--------------------------------------- 330
L+ F+ GTITSAKVMRD
Sbjct: 348 LREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQ 407
Query: 331 ------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+ R++
Sbjct: 408 DKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRSQ 467
Query: 379 LQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYT------TPPGIVSQVP--PRPGLMYQ 426
L+ +Q + + ++A +P Y P+++Y P G +P P+PG+M
Sbjct: 468 LEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGGLPFAPQPGMMMG 527
Query: 427 PLGLRTGWRANGFVPPTRPAFQVSP---LPVN-----PKHNRQNRGRMNGNMLPQVGAHY 478
G R G F P + + P +P N P G NG PQ+G
Sbjct: 528 VPGGRPGQYPGPF-PGQQGGRGMGPNQQIPPNFAQGIPMGAMGPGGIPNGMGYPQMG--- 583
Query: 479 MQQSSQSAASSKDSSNQQKGGQS----------KYVP-NGRIRELNKGSGVSLGTFNSGG 527
Q A + GQ VP G++R G G + G
Sbjct: 584 -QVQFGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGVPVQGQMRPGQGGRGQNAQPAAGRG 642
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLL 587
A + LAA QQKQ+LGE LYP ++ +P+L KITGMLLEMDN+ELL LL
Sbjct: 643 EEAPAAGLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLL 702
Query: 588 ESPESLAVKVEEAVQV 603
E E+L KV+EA+ V
Sbjct: 703 EDDEALRAKVDEALSV 718
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/365 (55%), Positives = 280/365 (76%), Gaps = 2/365 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LYVGDL P+V++ EL D FS L SVR+C+DS +G+S CY YVNF P DA +A+
Sbjct: 29 AALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALA 88
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
NHT+L GK +RI WS RDP RK+G+ANLFVKNL SI++ LQ++F FGNI+SCKV
Sbjct: 89 CLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKV 148
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A E+GKSK GFVQF++++SA AA+ LN T + K+++V +F+KK +R S K+T
Sbjct: 149 A-EENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFT 207
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL D+TE+ + +KFS+FGK+ +++I +D NG SRGFGFVNF++PD+A++A+EA+
Sbjct: 208 NVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG+++GSK L+ RAQKKAER+++L+H+ +E I K K SN+YVKN+D V D++L+
Sbjct: 268 NGAMLGSKKLFVGRAQKKAERQELLKHE-KEMVNCNIGKEKASNLYVKNLDASVDDDKLQ 326
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
HFS CG ITSAKVMR + G++KGFGFVCFS+ EEA KA+ T +G +LH + LY+A+AQR
Sbjct: 327 EHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQR 386
Query: 372 KEDRQ 376
KEDRQ
Sbjct: 387 KEDRQ 391
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 165/285 (57%), Gaps = 17/285 (5%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P T A+L+V +L P + L D F +F ++ S +V +++ G+S C+G+V F S
Sbjct: 111 PRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEEN--GKSKCFGFVQFDSDDS 168
Query: 66 AIRAIEVKNHTQLHGKMLRISW---SC-RDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
A A+ N T L GK L +S C R + ++ N++VKNL E + +++ F
Sbjct: 169 ATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFS 228
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FG + + + +GKS+G GFV FE+ + A A+E LNG +G K+++VGR KK++R
Sbjct: 229 EFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAER 288
Query: 182 --VLPSPAA---------KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS 230
+L K +NL++KNLD+ V ++ L E FS G+I S + R ++G S
Sbjct: 289 QELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLS 348
Query: 231 RGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI 275
+GFGFV F ++A++AL +NG+++ + LY A AQ+K +R++I
Sbjct: 349 KGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRI 393
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 155/282 (54%), Gaps = 18/282 (6%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAIE 158
A L+V +L + V L ++F G ++S ++ S GKS + +V F A+ A+
Sbjct: 29 AALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALA 88
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
LN T + K + R + LP NLF+KNLD + L + F KFG I
Sbjct: 89 CLNHTKLMGKPM---RIMWSHRDPLPRKTG-LANLFVKNLDPSINSASLQDIFCKFGNIL 144
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S +A +ENG S+ FGFV FD+ D A AL A+N +++ K L+ ++ KK ER
Sbjct: 145 SCKVA-EENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCER------ 197
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
KE + K +NVYVKN+ +D+T++ ++ FS+ G + + +M+D G ++GFGF
Sbjct: 198 ------KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGF 251
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
V F SP+EA KAV +G ML K L+V AQ+K +RQ L+
Sbjct: 252 VNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLK 293
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 56/69 (81%)
Query: 549 KQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSE 608
K+I+G LYPLV +P+L KITGMLLEM+NS+++ LL+SP+SLAV+VE+AVQ LK ++
Sbjct: 475 KEIIGHHLYPLVHSLQPELAGKITGMLLEMNNSDIIKLLDSPDSLAVQVEQAVQALKEAK 534
Query: 609 AKVSTQEAI 617
A ST+ ++
Sbjct: 535 AWRSTESSV 543
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/641 (39%), Positives = 369/641 (57%), Gaps = 95/641 (14%)
Query: 3 VVPPTATTPA-------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCY 55
V P+A+T + SLYVGDL PDV + LF+ FS +AS+RVC+D+ T RS Y
Sbjct: 23 VAVPSASTASDNPFQTPSLYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGY 82
Query: 56 GYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVR 115
YVNF DA RA++ N + + GK RI WS RDP R+SGV N+FVKNL E+IDN +
Sbjct: 83 SYVNFHQMADAERAMDTMNFSMIKGKPCRIMWSQRDPSLRRSGVGNIFVKNLNEAIDNKQ 142
Query: 116 LQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGR 174
L + F FGNI+SCKV T E G S G+G+V +ET E+ANAAIE L+G + + + VG
Sbjct: 143 LYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGH 202
Query: 175 FIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
F++++DR +TN ++KN+ + + L ++F++FG++ S ++R++ + GFG
Sbjct: 203 FMRRNDR---PDIDSWTNCYIKNVPYEWDDARLNQEFAQFGEVLSATVSREDTNQTLGFG 259
Query: 235 FVNFDNPDDARRALEAMNG-----SVIGSKV---LYAARAQKKAEREQILRHQFEEKRKE 286
F+NF + A A+EA+NG ++ G ++ +Y RAQKK+ERE+ LR +FE ++ +
Sbjct: 260 FINFAEHESAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMD 319
Query: 287 RILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPE 345
RI K++G N+YVKN+DD VTD+ L+ F+ GTITSA+VM+D K G ++GFGFVC+S+PE
Sbjct: 320 RISKFQGVNLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPE 379
Query: 346 EASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSL 405
E+++AVN +G ++ KP++VA+AQR+E R+A L+ Q+A G
Sbjct: 380 ESTRAVNEMNGKLIANKPIFVALAQRREVRRAQLEAQHANRAGG---------------- 423
Query: 406 YYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP---VNPKHNRQN 462
P +PG+M P+G G+ P P + P P + P +
Sbjct: 424 ------------PGQPGMMRAPMGAPMGY-------PGMPMYMQRPGPGGGMQPAY---- 460
Query: 463 RGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT 522
M+PQ+ ++ + + GQ N ++R
Sbjct: 461 ------PMMPQMMGPGGRRVPMAGRGGRGRGPMPGPGQQPIKFNQQVR------------ 502
Query: 523 FNSGGVMARKPDMLNGMLAA--------------PSPEQQKQILGERLYPLVEKHKPDLV 568
N+G M +P G A SPE QK ++GERLYPL+ + +P+L
Sbjct: 503 -NAGPPMQNQPPHQQGAPQAIPHEGALTASALASASPEVQKNMIGERLYPLIHQSQPELA 561
Query: 569 AKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEA 609
KITGMLLEMDNSELL LLESP++L K+ EA+QVL+ +A
Sbjct: 562 GKITGMLLEMDNSELLHLLESPDALNSKISEALQVLEAHQA 602
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 259/639 (40%), Positives = 360/639 (56%), Gaps = 51/639 (7%)
Query: 5 PPTAT-TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PP AT + ASLY+GDLHPDV++ LF+ FS + S+RVC+D+T+ S Y YVNF P
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N +HG+ +RI WS RDP AR++G N+F+KNL IDN + + F F
Sbjct: 109 ADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLF 168
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVAT ++G SKG+GFV FETE SA AIE +NG + DK++YVG+F ++ R+
Sbjct: 169 GNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMK 228
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L KYTN+F+KN + +E L FSKFG+I S ++ D G +GFGFV F +
Sbjct: 229 ELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQ 288
Query: 242 DDARRALEAMNGSVI-GSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
D A +A+E +N S++ G+ L RAQKK+ER L+ ++E ++ER+ +Y+G N+YVK
Sbjct: 289 DAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVK 348
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
NI++D+ D+ L+ HFS GTITSAKVM DE G +KGFGFVCF PEEA+ AV + M+
Sbjct: 349 NIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMI 408
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIE-GSSANVIPSGYPSLYYTTPPGIVSQVP 418
KPLYVA+AQRKEDR+A L QY Q +A + G A SG P++ PG
Sbjct: 409 GAKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQA----SGVPAMTQLYQPGQQGYFV 464
Query: 419 P-------RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQ---------- 461
P RPG Q +R PP + FQ P + RQ
Sbjct: 465 PNPMNAQGRPGFQPQSAQIRG--------PPGQRVFQNQMFMQYPFNQRQVYPQQQGRPP 516
Query: 462 ---NRGRMNGNM------LPQVGAHYMQQSS----QSAASSKDSSNQQKGGQSKYVPNGR 508
N GR M P+VG +Q Q + + + + +
Sbjct: 517 MRTNDGRPQYGMAPRPAGAPRVGGPGVQMGGAPIRQQGPAPRGAPQKPFYQGPPRQQQPQ 576
Query: 509 IRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQIL-GERLYPLVEKHKPDL 567
G++ + L + A + Q+++ L GER+Y L+EK P+
Sbjct: 577 QHSQQPAQQPGQQGQGQSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNH 636
Query: 568 --VAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
KITGM+LE+DN+EL+++L+ E KVEEA VL
Sbjct: 637 KEAGKITGMMLEIDNAELIMMLQDAELFRSKVEEAFGVL 675
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/614 (40%), Positives = 355/614 (57%), Gaps = 53/614 (8%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVG+L P+V + LF+ F+ +++S+RVC+D+ T RS Y YVNFL+ D+ RA+E
Sbjct: 81 SLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALEQ 140
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+T + G+ RI WS RDP R++G N+F+KNL E+IDN L + F FG I+SCKVA
Sbjct: 141 LNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKVA 200
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKY 190
++E G S G+GFV +E+ ++A AAI+++NG + DK++YVG I K DR + A Y
Sbjct: 201 SNEHG-SLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIEEARAHY 259
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN+++KNLD VT+E + F K+GKI S IA D+ G SRGFGFVNF + A +A+E
Sbjct: 260 TNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAKAVEE 319
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N + + L+ RAQKK+ERE+ LR +E + E++ KY+G N+Y+KN+ +D DE L
Sbjct: 320 LNDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERL 379
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ GT TSAKVMR G ++GFGFVC+S+PEEA+KAV +G M+ +PLYVA+AQ
Sbjct: 380 QEEFAPFGTTTSAKVMRTPTGASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQ 439
Query: 371 RKEDRQAHLQLQYAQH------MAGIEGSSANVIPSGYPSLYYTTPPGI--VSQVPPRPG 422
RK+ R L Q QH ++A + G P +YY PP + Q P +
Sbjct: 440 RKDVRHQQLAAQMMQHNQLRLQQQQAAAAAAAQMYPGAPGMYYPQPPAAAGMGQFPGQVR 499
Query: 423 LMYQPLGLRTGWRANGFVPPT--RPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ---VGAH 477
Y P G+ G +PP +PA P P G M PQ
Sbjct: 500 PQYAP-GIMQG------MPPMAGQPAGPYPPGQFPPA----------GGMFPQGYRPPRP 542
Query: 478 YMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLN 537
++ A + ++ VP + V +P++L
Sbjct: 543 PRGAAAPPAGAPAGVPAGAGAPRTAAVP-------------------AQPVQPAQPEVLT 583
Query: 538 GM-LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
LA SPE+QKQ+LGE +YP + +P L K+TGM+LE+ ELL L+E E+LA K
Sbjct: 584 AAALANASPEEQKQMLGEAIYPKIASTQPQLAGKLTGMILELPVGELLHLVEDDEALASK 643
Query: 597 VEEAVQVLKLSEAK 610
V+EA+ VL+ E++
Sbjct: 644 VDEALTVLREYESR 657
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 252/586 (43%), Positives = 354/586 (60%), Gaps = 51/586 (8%)
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
P + RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F
Sbjct: 82 PINRKRALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 141
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 142 FGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 200
Query: 183 --LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
L + A ++TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 201 AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER 260
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN
Sbjct: 261 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 320
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 321 LDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 379
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGY----------PSL 405
KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY +
Sbjct: 380 TKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPPSGYFMAAIPQTQNRAA 439
Query: 406 YYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRG 464
YY P ++Q+ P P W A G RP FQ P + P R
Sbjct: 440 YY--PASQIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFS 482
Query: 465 RMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------REL 512
M + +P+V + S+Q+ ++ + VP + + L
Sbjct: 483 TMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHL 542
Query: 513 NKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKIT 572
N V++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KIT
Sbjct: 543 NAQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKIT 600
Query: 573 GMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
GMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 601 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 646
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 164/289 (56%), Gaps = 21/289 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 120 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 177
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+E+F FG
Sbjct: 178 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 237
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 238 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 297
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 298 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 356
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 357 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 405
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L + F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 212 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 270
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 271 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 329
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 330 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 388
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 389 QRKEER-----QAHLTNQYMQRMAS 408
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 17/145 (11%)
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS 294
+ P + +RAL+ MN VI K + +Q R+ LR K
Sbjct: 76 LMTLQQPINRKRALDTMNFDVIKGKPVRIMWSQ----RDPSLR------------KSGVG 119
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
N+++KN+D + ++ L FS G I S KV+ DE G +KG+GFV F + E A +A+
Sbjct: 120 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 178
Query: 355 HGYMLHRKPLYVAIAQRKEDRQAHL 379
+G +L+ + ++V + +++R+A L
Sbjct: 179 NGMLLNDRKVFVGRFKSRKEREAEL 203
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/594 (42%), Positives = 342/594 (57%), Gaps = 47/594 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL VTD +L++ F + SVRVC+D GRS YVNF +P DA RA+E+
Sbjct: 40 SLYVGDLEASVTDSQLYE-FQPGGQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALEL 98
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N L+GK +R+ +S RDP +R+SG AN+F+KNL ++ID+ L + F FGNI+SCKVA
Sbjct: 99 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 158
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T E G+SKG GFVQ++ E+A +AI++LNG + DK +YVG F++K +R K+ N
Sbjct: 159 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 218
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL T+E LV+ F +G I S +I +G SR FGF+NF +PDDA RA+E +N
Sbjct: 219 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 278
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I K Y RAQKK+ERE L+ +FE+ K+ KY+G N+Y+KN+DD + D++L
Sbjct: 279 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 338
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS G ITS K+MRD G++KG GFV FS+ EEAS+A+ +G M+ KPLYVA AQRK
Sbjct: 339 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 398
Query: 373 EDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRT 432
EDR+A LQ + + G + P G Y P Q PRPG+ G
Sbjct: 399 EDRKAMLQPGFGFQQQLVPG----MRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSAQ 454
Query: 433 GWRANGFVPPTR-PAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKD 491
G ++ P +V P P HN + M P V +Q +D
Sbjct: 455 GQQSAQPFQQQMLPRGRVYRYP--PAHNMPDVPPM-----PGVAGGMIQSYDMGGFPVRD 507
Query: 492 SSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQI 551
+ S +GT S LA +PEQQ+ I
Sbjct: 508 AGL---------------------SPAPIGTLTSA-------------LANANPEQQRTI 533
Query: 552 LGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
LGE LYPLVE + + AK+TGMLLEMD +E+L LLESPE+L KV EA+ VL+
Sbjct: 534 LGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLR 587
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 272/685 (39%), Positives = 373/685 (54%), Gaps = 99/685 (14%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 115 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET E+A AI+++NG + DK+++VG I K DR A
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKAN 234
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRAL 248
+TN+++KN+D D TEE + F KFG+I S +ARD E+G SRGFGFVNF + D+A A+
Sbjct: 235 FTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
EA+N + LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y+KN+ DD+ DE
Sbjct: 295 EALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDE 354
Query: 309 ELKAHFSQCGTITSAKVMR-----------------------------DEKGIN------ 333
+L+ FS GTITSAKVMR DE G N
Sbjct: 355 KLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDN 414
Query: 334 ------------------KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
KGFGFVCFSSP+EASKAV + M+H KPLYVA+AQRK+ R
Sbjct: 415 KENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVR 474
Query: 376 QAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVP-PRPGLMYQPLGL 430
++ L+ +Q + + ++A +P + P+++Y PG + +P R G+ +Q G+
Sbjct: 475 RSQLEASIQARNTIRQQQAAAAAGMPQPFMQPAVFYG--PGQQNFIPNQRGGMPFQQPGM 532
Query: 431 ----RTGWR-----------------ANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGN 469
G R N +PP LP+ Q G NG
Sbjct: 533 VIPGMPGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIGAQGLPM----GMQGAGIPNGL 588
Query: 470 MLPQVG---AHYMQQSSQSAASSKDSSNQQ---KGGQ-SKYVP----NGRIRELNKGSGV 518
PQ+G A + + Q+ + N Q GGQ + +P GR + +G G
Sbjct: 589 NYPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMPVQQGMGRPGQAGRGQGA 648
Query: 519 SLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEM 578
A + +L A P QQKQ+LGE +YP ++ +P+L KITGMLLEM
Sbjct: 649 PAQAVGQRDENASPSGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEM 708
Query: 579 DNSELLLLLESPESLAVKVEEAVQV 603
DN+ELL L++ +L KV+EA+ V
Sbjct: 709 DNAELLALVDDDAALKAKVDEALTV 733
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 272/685 (39%), Positives = 373/685 (54%), Gaps = 99/685 (14%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 115 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET E+A AI+++NG + DK+++VG I K DR A
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKAN 234
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRAL 248
+TN+++KN+D D TEE + F KFG+I S +ARD E+G SRGFGFVNF + D+A A+
Sbjct: 235 FTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
EA+N + LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y+KN+ DD+ DE
Sbjct: 295 EALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDE 354
Query: 309 ELKAHFSQCGTITSAKVMR-----------------------------DEKGIN------ 333
+L+ FS GTITSAKVMR DE G N
Sbjct: 355 KLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDN 414
Query: 334 ------------------KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
KGFGFVCFSSP+EASKAV + M+H KPLYVA+AQRK+ R
Sbjct: 415 KENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVR 474
Query: 376 QAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVP-PRPGLMYQPLGL 430
++ L+ +Q + + ++A +P + P+++Y PG + +P R G+ +Q G+
Sbjct: 475 RSQLEASIQARNTIRQQQAAAAAGMPQPFMQPAVFYG--PGQQNFIPNQRGGMPFQQPGM 532
Query: 431 ----RTGWR-----------------ANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGN 469
G R N +PP LP+ Q G NG
Sbjct: 533 VIPGMPGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIGAQGLPM----GMQGAGIPNGL 588
Query: 470 MLPQVG---AHYMQQSSQSAASSKDSSNQQ---KGGQ-SKYVP----NGRIRELNKGSGV 518
PQ+G A + + Q+ + N Q GGQ + +P GR + +G G
Sbjct: 589 NYPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMPVQQGMGRPGQAGRGQGA 648
Query: 519 SLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEM 578
A + +L A P QQKQ+LGE +YP ++ +P+L KITGMLLEM
Sbjct: 649 PAQAVGQRDENASPSGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEM 708
Query: 579 DNSELLLLLESPESLAVKVEEAVQV 603
DN+ELL L++ +L KV+EA+ V
Sbjct: 709 DNAELLALVDDDAALKAKVDEALTV 733
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 256/624 (41%), Positives = 364/624 (58%), Gaps = 61/624 (9%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
AV+PP + +SLYVGDL V + +L FS+ L SVRVC+D +G S YGYVNF
Sbjct: 28 AVLPPLGSI-SSLYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFY 86
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
S +A A+E N L GK +R+ +S RDP RKSG ANLFVKNL SID+ L EMF
Sbjct: 87 SRQEATCALEALNFAPLSGKHIRVMFSNRDPSLRKSGRANLFVKNLEPSIDSKNLYEMFS 146
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+FG I+SCKVAT G+SKG+GFVQ+ETEESA AI LNG D+ ++VG +++ +R
Sbjct: 147 SFGTILSCKVATDSAGQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGLHMRRRNR 206
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ K+TN+++KNL ++ +++ L ++F+ FG+I S ++ RD NG S+ FGFVNF+ P
Sbjct: 207 EV-----KFTNVYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVNGVSKCFGFVNFEKP 261
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF-EEKRKERILKYKGSNVYVKN 300
+ A A++ NG VI K LY RAQKKAER+ L+ +F +E R +++ K G N+Y+KN
Sbjct: 262 EFALEAVKKANGKVINDKTLYVGRAQKKAERQAELKTKFKQEDRDKKVDKPNGINLYLKN 321
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
IDD + DE LK F + G +TS KVM D +G +KG GFV F++ E A+N +G ++
Sbjct: 322 IDDSINDEGLKILFEEFGQVTSCKVMVDAQGRSKGSGFVLFATAEAGHSAINGMNGRIVG 381
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP-PGIVSQVPP 419
+KPLYV +AQ KE+R+A L +AQ + S +G +Y+ P PG Q+PP
Sbjct: 382 KKPLYVGLAQPKEERRAMLMAHFAQRNLAMAASPY----AGPQQVYFGHPAPG---QIPP 434
Query: 420 RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSP--LPVNPKHNRQNRGRMNGNMLPQVGAH 477
+ + P FVP P VSP +P N + +R R R G A
Sbjct: 435 QAAVFGFP---------QHFVPAMGP---VSPVMMPHNMQRSRYPRQRTGGP------AA 476
Query: 478 YMQQSSQSAASSKDS----SNQQKGGQSKYVPNG----RIRELNKGSGVSLGTFNSGGVM 529
Y QQ + A++ + N + G +P G + + + GS ++
Sbjct: 477 YRQQQAMIHANANHNIRYMPNARHGAYPAMLPQGFPSAMVSQQHDGSSITTA-------- 528
Query: 530 ARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
+A+ P Q+QILG +LY LVE+ + D K+TGMLLEMD ++L LL+S
Sbjct: 529 ----------VASAEPADQQQILGNKLYALVEQLEHDHAGKVTGMLLEMDKVKILQLLQS 578
Query: 590 PESLAVKVEEAVQVLKLSEAKVST 613
PE L KV EA+ VL+ ++A+ S
Sbjct: 579 PEVLRAKVREAMDVLQRTKAEGSA 602
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 258/629 (41%), Positives = 369/629 (58%), Gaps = 34/629 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+DS T S Y YVNF A +
Sbjct: 45 ASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAHAEWVLA 104
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G +RI WS RDP RK GV N+FVKNL +SIDN L + F FG I+SCKV
Sbjct: 105 TMNLDVIKGNPIRIMWSQRDPGQRKRGVGNVFVKNLEKSIDNKALYDTFSTFGRILSCKV 164
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ E+G SKG+GFV FET+ESA AIE +NG + + +++VGRF + +R L A
Sbjct: 165 ISDENG-SKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFVGRFKSRRERESELGVKAKD 223
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
YTN+++KN ++ ++ L E F+K+G S+ + D+ G S+GFGFV+F + +DA+ A++
Sbjct: 224 YTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVD 283
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ FE+ ++ + ++Y+G N+Y+KN+DD + DE
Sbjct: 284 DMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNLDDTINDEH 343
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSS ++A+KA +G ++ KPLYV++A
Sbjct: 344 LRKEFSPFGTITSAKVMM-ENGRSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYVSLA 402
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY----PSLYYTTPPGIVSQVPPRPGLMY 425
QRKE+R+ HL+ QY +A + S +N + + Y S Y+ T P + SQ
Sbjct: 403 QRKEERRMHLKNQYMYRLAHLR-SISNPVFNPYQLANSSPYFMT-PSLPSQSQAALYNAS 460
Query: 426 QPLGLRTG--WRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNM-LPQVGAHYMQQS 482
Q LR+ W + PP+ F + P R + +P++GA +
Sbjct: 461 QLAQLRSSPRWISKSIRPPS---FHTLTKAICPNIPRATFSPLRSTSEIPRMGA-----T 512
Query: 483 SQSAASSKDSSNQQKGGQS--KYVPNGRIRELNKGSGVSLGTFNSG---GVMARKP---- 533
S+ A S G + VPN + + G F+ +AR+P
Sbjct: 513 SRVANSPAQMLGPLPGTGTFLPTVPNVPHLKYDAGVDYPEQPFSKSPYISTLARQPAGHI 572
Query: 534 ----DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
++ MLA+ P +QK+ILGERL+P+++ P L KITGMLLE DNSE+L LLES
Sbjct: 573 SGQESLMPSMLASALPPEQKRILGERLFPIIQGISPTLAGKITGMLLETDNSEILHLLES 632
Query: 590 PESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
PESL KV+EA VL+ +AK TQ+ ++
Sbjct: 633 PESLHCKVKEAAAVLQTHQAKEVTQKEVN 661
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 18/196 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P + +L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF +
Sbjct: 39 TPNSPTASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAH 98
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A L MN VI K +I+ Q + +++R + NV+VKN++
Sbjct: 99 AEWVLATMNLDVI------------KGNPIRIMWSQRDPGQRKRGV----GNVFVKNLEK 142
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L FS G I S KV+ DE G +KG+GFV F + E A KA+ +G +L+
Sbjct: 143 SIDNKALYDTFSTFGRILSCKVISDENG-SKGYGFVHFETQESAGKAIEKMNGMLLNNLK 201
Query: 364 LYVAIAQRKEDRQAHL 379
++V + + +R++ L
Sbjct: 202 VFVGRFKSRRERESEL 217
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 251/612 (41%), Positives = 349/612 (57%), Gaps = 77/612 (12%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +SLYVGDLHPDV++ LF+ F++ +A++R+C+D+TT RS Y Y+N+ + DA
Sbjct: 3 TTFSSSSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDA 62
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
RA++ N+T + GK RI WS RDP RKSG+ N+F+KNL +++D+ L + F FGNI
Sbjct: 63 ERALDTLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFGNI 122
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
+SCKV T E SKG GFV +E++ESA AI +NG + +++++VG F K S +
Sbjct: 123 LSCKVVTDETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPF-KSSKERGATQ 181
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
KYTN+F+KNL DV+E+ L + GKI +L I DE G S+GFGF NF++ D A+
Sbjct: 182 EVKYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADAAKG 241
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
A+E NG + KV+Y RAQKK ERE L+H+FE KY+G N+Y+KN+DD +
Sbjct: 242 AVENENGKMFSGKVIYVGRAQKKLEREAELKHKFE-------TKYQGVNLYIKNLDDSID 294
Query: 307 DEELKAHFSQCGTITSAKVMRDEKG-INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
++L+A FS GTITS+KVMRD+KG +KGFGFVC+S+P+EASKAV HG M+ KPLY
Sbjct: 295 SDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAVAEMHGRMVGSKPLY 354
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG----IVSQVPPRP 421
VA AQRK+ R+A L+ Q+ + + + P+G P Y PP + Q+ PRP
Sbjct: 355 VAFAQRKDVRRAQLEAQHTKFKSSRMPVQSIYPPTG-PIFY---PPAGMPVVYPQMIPRP 410
Query: 422 GLMYQPLGLRTGWRA----NGFVPPTRPAFQV-SP---LPVNPKHNRQNRGRMNGNMLPQ 473
R GW G PP + + + +P +P H Q R R +G
Sbjct: 411 P--------RAGWNGPVPQQGQYPPMQGQYPIRNPRGGVPPTGNHRNQPRPRPDG----- 457
Query: 474 VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP 533
Q A+ + + Q P V+L T S M R
Sbjct: 458 ----------QQPAAQQPIAQQLIAEPQAVQPE-----------VTLATVQS---MPR-- 491
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE-MDNSELLLLLESPES 592
EQQ LGE LYPL+ +PDL KITGMLL+ + EL L + E
Sbjct: 492 ------------EQQNSFLGELLYPLIHASQPDLSGKITGMLLDSLTVEELFTLYQRTEL 539
Query: 593 LAVKVEEAVQVL 604
LA K++EA+ VL
Sbjct: 540 LADKIKEALDVL 551
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/583 (42%), Positives = 353/583 (60%), Gaps = 53/583 (9%)
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+
Sbjct: 2 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 61
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPS 185
SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L +
Sbjct: 62 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 120
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA+
Sbjct: 121 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 180
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD +
Sbjct: 181 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 240
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KP Y
Sbjct: 241 DDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFY 299
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYT 408
VA+AQRKE+RQAHL Q+ Q MA ++ VI PSGY + YY
Sbjct: 300 VALAQRKEERQAHLTNQHMQRMASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY- 358
Query: 409 TPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN 467
PP ++Q+ P P W A G RP FQ P + P R M
Sbjct: 359 -PPSQIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMR 402
Query: 468 --GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKG 515
+ +P+V + S+Q+ ++ + VP + + LN
Sbjct: 403 PASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQ 462
Query: 516 SGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGML 575
V++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGML
Sbjct: 463 PQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGML 520
Query: 576 LEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
LE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 521 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 563
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 160/285 (56%), Gaps = 21/285 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 35 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 92
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG
Sbjct: 93 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 152
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 153 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 212
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 213 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 271
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQ 279
FV F +P++A +A+ MNG ++ +K Y A AQ+K ER+ L +Q
Sbjct: 272 FVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQ 316
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 127 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 185
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 186 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 244
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K YV
Sbjct: 245 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALA 303
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN M+ + S
Sbjct: 304 QRKEER-----QAHLTNQHMQRMAS 323
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 251/606 (41%), Positives = 361/606 (59%), Gaps = 65/606 (10%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P A+T +LYVGDL P V + ++FD F + ++ SVR+C+D T RS Y YVN+ + D
Sbjct: 11 PFAST--ALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQD 68
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RAIE N ++GK +RI +S RDP RKSG NLFVKNL +SIDN L ++F +G
Sbjct: 69 ASRAIEELNFMPVNGKPVRIMFSYRDPSIRKSGSGNLFVKNLDKSIDNKALHDLFSPYGK 128
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCK+A SKGHGFVQF+TE++A+ AIE +NGTT+ DK+++VG F+++ +R
Sbjct: 129 ILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQER--DP 186
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
PA+K+ N+F+KNL T+E L + F FG I+S ++ ++ +G S+ FGFVNF+NP+DA
Sbjct: 187 PASKFNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAV 246
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+E ++G+ K LY +RAQKK ERE L+ +FE +RK+ K +N+Y+KN+DD +
Sbjct: 247 KAVEDLHGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDK-SPTNLYLKNLDDGI 305
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE+LK FS G +TS KVMRD G +KG GFV FS+ + A +AV +G M+ KPLY
Sbjct: 306 DDEKLKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAVAQMNGKMIGSKPLY 365
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY 425
VA+AQ+KE+R+A L+ Q+A P +P PP + S V + L+Y
Sbjct: 366 VAMAQKKEERKAKLEAQFASRG-----------PVNFP------PPPLYSAVGQQ--LLY 406
Query: 426 QPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQS 485
+RPA V P R N G+M G PQ
Sbjct: 407 -----------------SRPAPMVPQQPAGFAMVRPNVGQMPGFFPPQ------------ 437
Query: 486 AASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSP 545
QQ + + + GS + + +A +L LA+ +P
Sbjct: 438 --------RQQGHARVPFQQFMQRESTFHGSNSRTPAYGNNSFLA----VLASHLASATP 485
Query: 546 EQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
EQQ+ +LGE+LYPLV+ + + KITGMLLEMD +E+L LLESPE+L +KV EA++VL+
Sbjct: 486 EQQRIMLGEQLYPLVDCIEHNHAGKITGMLLEMDQTEVLHLLESPEALNLKVSEAMEVLR 545
Query: 606 LSEAKV 611
S+ ++
Sbjct: 546 DSQQRL 551
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 272/685 (39%), Positives = 373/685 (54%), Gaps = 99/685 (14%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 115 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET E+A AI+++NG + DK+++VG I K DR A
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKAN 234
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRAL 248
+TN+++KN+D D TEE + F KFG+I S +ARD E+G SRGFGFVNF + D+A A+
Sbjct: 235 FTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
EA+N + LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y+KN+ DD+ DE
Sbjct: 295 EALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDE 354
Query: 309 ELKAHFSQCGTITSAKVMR-----------------------------DEKGIN------ 333
+L+ FS GTITSAKVMR DE G N
Sbjct: 355 KLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDN 414
Query: 334 ------------------KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
KGFGFVCFSSP+EASKAV + M+H KPLYVA+AQRK+ R
Sbjct: 415 KENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVR 474
Query: 376 QAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVP-PRPGLMYQPLGL 430
++ L+ +Q + + ++A +P + P+++Y PG + +P R G+ +Q G+
Sbjct: 475 RSQLEASIQARNTIRQQQAAAAAGMPQPFMQPAVFYG--PGQQNFIPNQRGGMPFQQPGM 532
Query: 431 ----RTGWR-----------------ANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGN 469
G R N +PP LP+ Q G NG
Sbjct: 533 VIPGMPGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIGAQGLPM----GMQGAGIPNGL 588
Query: 470 MLPQVG---AHYMQQSSQSAASSKDSSNQQ---KGGQ-SKYVP----NGRIRELNKGSGV 518
PQ+G A + + Q+ + N Q GGQ + +P GR + +G G
Sbjct: 589 NYPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMPVQQGMGRPGQAGRGQGA 648
Query: 519 SLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEM 578
A + +L A P QQKQ+LGE +YP ++ +P+L KITGMLLEM
Sbjct: 649 PAQAVGQRDENASPNGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEM 708
Query: 579 DNSELLLLLESPESLAVKVEEAVQV 603
DN+ELL L++ +L KV+EA+ V
Sbjct: 709 DNAELLALVDDDAALKAKVDEALTV 733
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 255/608 (41%), Positives = 359/608 (59%), Gaps = 49/608 (8%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TA T ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVNF + D
Sbjct: 75 TAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDG 134
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+A++ N+T + G+ RI WS RDP RK G N+F+KNL +IDN L + F FG I
Sbjct: 135 EKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKI 194
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
+SCKVA E G +KG+GFV F++ ESANAAIE++NG + DK++YVG + + +R
Sbjct: 195 LSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVE 254
Query: 187 A--AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A A +TN+++KNLD+++TE+ + F +FG+I SL + +D+N RGFGFVN+ N + A
Sbjct: 255 ALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECA 314
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
++A++ +N K LY RAQKK ERE+ LR ++E+ + E++ KY+G N+++KN+ D+
Sbjct: 315 QKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDE 374
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
V DE LKA FS GTITSAK+M DE+G +KGFGFVC+++PEEA+KAV + ML KPL
Sbjct: 375 VDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPL 434
Query: 365 YVAIAQRKEDRQAHLQLQY-AQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVPPRPG 422
YVA+AQRKE R++ L+ Q A++ ++ A +G P++ Y T P
Sbjct: 435 YVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAA--AGIPAVQYGATGP----------- 481
Query: 423 LMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAH--YMQ 480
L+Y P G NG P P P+P+ P Q P G Y
Sbjct: 482 LIYGPGGYPIPAAVNGRGMPMVPGHN-GPMPMYPGMPTQ---------FPAGGPAPGYPG 531
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARK--PDMLNG 538
+++ ++ G+ +P GS S G + V A P+
Sbjct: 532 MNARGPVPAQ--------GRPMMMP---------GSVPSAGPAEAEAVPAVPGMPERFTA 574
Query: 539 M-LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
LAA E +KQ+LGE LYP V + L KITGMLLEM NSELL LLE +L +V
Sbjct: 575 ADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERV 634
Query: 598 EEAVQVLK 605
EA+ VL+
Sbjct: 635 NEAIGVLQ 642
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 154/301 (51%), Gaps = 19/301 (6%)
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGF 144
S P A+L+V L S+ L E+F + G + S C+ A + +S G+ +
Sbjct: 68 SVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTR--RSLGYAY 125
Query: 145 VQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTE 204
V F E A++ LN T + + I S R N+F+KNLD +
Sbjct: 126 VNFHNMEDGEKALDELNYTLIKGRPCR----IMWSQRDPSLRKMGTGNVFIKNLDPAIDN 181
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
+ L + FS FGKI S +A DE G ++G+GFV+FD+ + A A+E +NG ++ K +Y
Sbjct: 182 KALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 241
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK 324
+ ER+ K LK +NVY+KN+D ++T++E F Q G ITS
Sbjct: 242 HHVSRRERQS----------KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLS 291
Query: 325 VMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYA 384
+++D+ +GFGFV +++ E A KAV+ + K LYV AQ+K +R+ L+ +Y
Sbjct: 292 LVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYE 351
Query: 385 Q 385
Q
Sbjct: 352 Q 352
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 282/369 (76%), Gaps = 2/369 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LYVGDL P+V++ EL D FS L SVR+C+DS +G+S CY YVNF P DA +A+
Sbjct: 29 AALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALA 88
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
NHT+L GK +RI WS RDP RK+G+ANLFVKNL SI++ LQ++F FGNI+SCKV
Sbjct: 89 CLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKV 148
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A E+GKSK GFVQF++++SA AA+ LN T + K+++V +F+KK +R S K+T
Sbjct: 149 A-EENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFT 207
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL D+TE+ + +KFS+FGK+ +++I +D NG SRGFGFVNF++PD+A++A+EA+
Sbjct: 208 NVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG+++GSK L+ RAQKKAER+++L+H+ +E I K K SN+YVKN+D V D++L+
Sbjct: 268 NGAMLGSKKLFVGRAQKKAERQELLKHE-KEMVNCNIGKEKASNLYVKNLDASVDDDKLQ 326
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
HFS CG ITSAKVMR + G++KGFGFVCFS+ EEA KA+ T +G +LH + LY+A+AQR
Sbjct: 327 EHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQR 386
Query: 372 KEDRQAHLQ 380
KEDRQ L+
Sbjct: 387 KEDRQRVLR 395
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 167/287 (58%), Gaps = 17/287 (5%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P T A+L+V +L P + L D F +F ++ S +V +++ G+S C+G+V F S
Sbjct: 111 PRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEEN--GKSKCFGFVQFDSDDS 168
Query: 66 AIRAIEVKNHTQLHGKMLRIS---WSC-RDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
A A+ N T L GK L +S C R + ++ N++VKNL E + +++ F
Sbjct: 169 ATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFS 228
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FG + + + +GKS+G GFV FE+ + A A+E LNG +G K+++VGR KK++R
Sbjct: 229 EFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAER 288
Query: 182 --VLPSP---------AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS 230
+L K +NL++KNLD+ V ++ L E FS G+I S + R ++G S
Sbjct: 289 QELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLS 348
Query: 231 RGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
+GFGFV F ++A++AL +NG+++ + LY A AQ+K +R+++LR
Sbjct: 349 KGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRVLR 395
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/577 (43%), Positives = 349/577 (60%), Gaps = 53/577 (9%)
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 2 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 61
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYT 191
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A ++T
Sbjct: 62 DENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT 120
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++ M
Sbjct: 121 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE L+
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 240
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQR
Sbjct: 241 KEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 299
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPGIV 414
KE+RQAHL QY Q MA + VI PSGY + YY PP +
Sbjct: 300 KEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPSQI 357
Query: 415 SQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GNML 471
+Q+ P P W A G RP FQ P + P R M + +
Sbjct: 358 AQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV 402
Query: 472 PQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVSLG 521
P+V + S+Q+ ++ + VP + + LN V++
Sbjct: 403 PRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ 462
Query: 522 TFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNS 581
+ V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+DNS
Sbjct: 463 Q-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNS 520
Query: 582 ELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
ELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 521 ELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 557
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 164/289 (56%), Gaps = 21/289 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 86
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 146
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 147 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 206
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 207 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 265
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 314
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 121 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 179
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 238
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 239 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 297
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 298 QRKEER-----QAHLTNQYMQRMAS 317
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 250/585 (42%), Positives = 352/585 (60%), Gaps = 53/585 (9%)
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKV E+G SKG+GFV FET+E+A E +NG + D++++VGRF + +R L
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERVSEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
+ A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLY 406
LYVA+AQRKE+RQAHL QY Q MA + VI PSGY + Y
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 422
Query: 407 YTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGR 465
Y PP ++Q+ P P W A G RP FQ P + P R
Sbjct: 423 Y--PPSQIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFST 465
Query: 466 MN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELN 513
M + +P+V + S+Q+ ++ + VP + + LN
Sbjct: 466 MRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLN 525
Query: 514 KGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITG 573
V++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITG
Sbjct: 526 AQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITG 583
Query: 574 MLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
MLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 584 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 309
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 369 QRKEER-----QAHLTNQYMQRMAS 388
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 245/609 (40%), Positives = 355/609 (58%), Gaps = 63/609 (10%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
+ ASLYVGDLH ++++ LFD F E + S+R+C+D+ T +S Y YVNF +P DA RA
Sbjct: 4 SSASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAERA 63
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
++ N+ + G +RI WS RDP RKSG+ N+F+KNL +SIDN L + F FGNI+SC
Sbjct: 64 LDTLNYASVKGIPIRIMWSQRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFGNILSC 123
Query: 130 KVATS--------EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
KV + ++ +S G+GFV FET+E+A AI +NG + K+++VG F+KK++R
Sbjct: 124 KVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQVFVGPFVKKTER 183
Query: 182 V-LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
+ + S +TN+++KNLD+ V E+ L E FSKFG+I + ++ R ENG S+ FGF+NF +
Sbjct: 184 LKILSNEDSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGASKEFGFINFAD 243
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
A A++ MN +K L+ RAQKK ER L+ F++ ++E++ KYKG N+YVKN
Sbjct: 244 HASALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVKN 303
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+DD V DE L+ FS+ G ITSAKVM D K ++GFGFVCF +PE A+KA+ G+M+
Sbjct: 304 LDDSVDDERLRQEFSKFGDITSAKVMSDNKQ-SRGFGFVCFKTPEAANKALTEMSGHMIG 362
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTT-----PPGIVS 415
KPLYV AQ KE R++ L+ QY +IP P + PPG S
Sbjct: 363 SKPLYVNFAQPKELRRSQLEAQYNAR------KQPQMIPQMMPQFFIPAQGAFPPPG--S 414
Query: 416 QVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVG 475
Q+ PR +QP+ A G + + QNRG M+
Sbjct: 415 QIKPR----WQPV-------AGG------------------RQSNQNRGGMSRG------ 439
Query: 476 AHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM 535
SSQ A +++ + G+ KY N R + + + T + A +
Sbjct: 440 -----GSSQRGARGGNANTAKNAGRIKYNNNARNQPREQPQQTTPNTQEAQTTQAPSDQL 494
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
LA S + QKQ+LGERL+PLV +P KITGMLL+M+ S++L L+ES ++L
Sbjct: 495 TAEYLAKLSEQDQKQLLGERLFPLVHLREPKNAPKITGMLLDMEVSDILTLIESTDALNQ 554
Query: 596 KVEEAVQVL 604
K++EAV+VL
Sbjct: 555 KIKEAVKVL 563
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 249/576 (43%), Positives = 350/576 (60%), Gaps = 34/576 (5%)
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
+ A ++TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGYPSLYYTTPPGIVSQ 416
LYVA+AQRKE+RQAHL QY Q MA + VI PSGY + P ++
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY---FMAAIPQTQNR 355
Query: 417 VPPRPGLMYQPLGLRTG-WRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GNMLP 472
P L + W A G RP FQ P + P R M + +P
Sbjct: 356 AAYYPTNQLAQLARPSPRWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVP 411
Query: 473 QVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVSLGT 522
+V + S+Q+ ++ + VP + + LN V++
Sbjct: 412 RVMSTQRVANTSTQTMGPRPAAAATAATPSVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQ 471
Query: 523 FNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSE 582
+ V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+DNSE
Sbjct: 472 -PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSE 529
Query: 583 LLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
LL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 530 LLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 565
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 164/289 (56%), Gaps = 21/289 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 93
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+E+F FG
Sbjct: 94 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 153
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 154 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 213
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 214 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 272
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 273 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 321
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L + F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 128 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 186
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 187 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 245
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 246 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 304
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 305 QRKEER-----QAHLTNQYMQRMAS 324
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 259/623 (41%), Positives = 369/623 (59%), Gaps = 44/623 (7%)
Query: 3 VVPPTATTPA------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYG 56
+V P A T A SLYVGDL +V D +L+D FS+ + SVRVC+D T S YG
Sbjct: 10 IVVPAALTSAGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYG 69
Query: 57 YVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRL 116
YVN+ + DA A+E N+ L+GK +RI +S RDP RK+G ANLF+KNL SIDN L
Sbjct: 70 YVNYSNARDAANAMENLNYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKAL 129
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
E F FGN++SCKVA +G SKGHGFVQF+ ++SA AIE L+G + DK++YVG F+
Sbjct: 130 HETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFV 189
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
+ +R P K+TN+++KNL T E L + F+ FG I S+ I +DENG S+ FGFV
Sbjct: 190 RCQERSSP----KFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFV 245
Query: 237 NFDNPDDARRALEAMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN 295
NF + D A A+E +NGS KVL+ RAQKK+ERE L+ FE+++ +R K++G+N
Sbjct: 246 NFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGAN 305
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
+Y+KNID + +E+LK FS+ GTITS KVM D +G +KG GFV F++PEEASKA++ +
Sbjct: 306 LYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMN 365
Query: 356 GYMLHRKPLYVAIAQRKEDRQAHLQ-----LQYAQHMAGIEGSSANVIPSGYPSLYYTTP 410
G ++ +KP+YV++AQRKE+R+A LQ +Q + AG S + P + YY
Sbjct: 366 GKIIGQKPVYVSVAQRKEERKAQLQAHFPAIQVSGGNAGYHSSVQRLAPQQF---YYEQ- 421
Query: 411 PGIVSQVPPRP-GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGN 469
G + P+P G ++P F+ P F V+P + P H Q +G
Sbjct: 422 -GTFDLMAPQPNGYGFRP----------KFMSDVGPGF-VTPNYLLPYH-LQRQGHPGNR 468
Query: 470 MLPQVGAHYMQQSSQSAASSKDSSNQ------QKGGQSKYVPNGRIRELNKGSGVSLGTF 523
M + ++ Q + + NQ Q G P ++ + + + S G
Sbjct: 469 MGGRPAGNFQQVRQKKNQMLPRNPNQGLKYNGQNGVGMSVDPGSQLMDPSASAATSTGNH 528
Query: 524 NSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL-VAKITGMLLEMDNSE 582
+ G + L LA+ S E Q ++L E L+PLV + P + AK+T MLLEMD SE
Sbjct: 529 HHG---PLSNNSLASALASASQENQHRMLEEHLHPLVGRLAPTIQTAKVTRMLLEMDQSE 585
Query: 583 LLLLLESPESLAVKVEEAVQVLK 605
++ L+ESPE L +KV EA++ L+
Sbjct: 586 VIHLIESPEELKMKVAEAMRFLR 608
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 268/674 (39%), Positives = 371/674 (55%), Gaps = 85/674 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ S D +A+E
Sbjct: 68 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKALE 127
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 128 ELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 187
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
AT E+G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K DR A
Sbjct: 188 ATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKAN 247
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
YTN+++KN++ +VTEE E FSK+G+I S +ARD G RGFGFVN+ A + +E
Sbjct: 248 YTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKCVE 307
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+ D+V DE+
Sbjct: 308 EMNGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDDEK 367
Query: 310 LKAHFSQCGTITSAKVMR--------DEK------------------------------- 330
L+A F++ G ITSAKVMR DEK
Sbjct: 368 LRAMFAEFGPITSAKVMRDTPPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKPEVKKPE 427
Query: 331 ---GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY-AQH 386
G +KGFGFVCF++P++A+KAV + M+ KPLYVA+AQRKE R++ L+ A++
Sbjct: 428 RKLGKSKGFGFVCFANPDDATKAVAEMNQRMVDGKPLYVALAQRKEVRKSQLEASIQARN 487
Query: 387 MAGIEGSSANVIPSGY--PSLYYT------TPPGIVSQVP-PRPGLMYQPL-GLRTG--- 433
++ +A Y P +YY PP +P P+ L P+ G R G
Sbjct: 488 QLRMQQQAAQAGLPQYMQPPVYYPGQQPGFLPPAAGRGMPFPQGALGMPPVQGGRPGQFP 547
Query: 434 ----WRANGFVPPTRPAFQVS------PLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
G +PP P + + P P NP+ + + +
Sbjct: 548 PYPQQAGRGTIPPQVPMYPIGQFPGAYPQPNNPQFLAAMQQVQQAAA---LAGGRGAPAG 604
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIR--ELNKGSGVSLGTFNSG-GVMARKP------- 533
+ + Q G + Y PNGR + L +G+G + F +G G P
Sbjct: 605 RGVPTVPIPQGIQAPGLAGYPPNGRPQNGNLGRGAGPNRSNFPAGRGAPPAGPLGVPGEL 664
Query: 534 ---DMLNGMLAAPS-PEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
+L LAA + P+QQKQILGE L+P V+ +P+L KITGMLLEMDN EL+ L+E
Sbjct: 665 SPAALLQSQLAATTNPQQQKQILGENLFPKVQALQPELAGKITGMLLEMDNQELINLIED 724
Query: 590 PESLAVKVEEAVQV 603
+L KV EA+ V
Sbjct: 725 EAALVAKVNEAMAV 738
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/450 (48%), Positives = 293/450 (65%), Gaps = 24/450 (5%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL VTD +LF+AFS+ + SVRVC+D TT RS YGYVN+ +P DA RA+
Sbjct: 40 SLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 99
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N L+G+ +R+ +S RDP RKSGV N+F+KNL +SID+ L E F FG I+SCKVA
Sbjct: 100 LNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVA 159
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQ++T+E+A AI+ LNG + DK++YVG F+ K R K+TN
Sbjct: 160 VDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTN 219
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL +++E L + F +FG S +I RD G S+GFGFVNF+N DDA RA++A+N
Sbjct: 220 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 279
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K + +AQKK+ERE L+ +FE+ KE K +GSN+YVKN+D+ VTD++L+
Sbjct: 280 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 339
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
HF+ GTITS KVMRD G+++G GFV FS+PEEAS+A+ +G M+ KPLYVA+AQRK
Sbjct: 340 HFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRK 399
Query: 373 EDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGL 423
EDR+A LQ Q++Q +M G + P G P + Y PP + +PP+PG
Sbjct: 400 EDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAM---IPPQPGF 456
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLP 453
YQ VP RP SP+P
Sbjct: 457 GYQ----------QQLVPGMRPGG--SPMP 474
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 96/183 (52%), Gaps = 27/183 (14%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD+ VT+ L E FS+ G++ S+ + RD S G+G+VN+ P DA RAL
Sbjct: 39 TSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 98
Query: 250 -----AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
A+NG I +V+Y+ R + K N+++KN+D
Sbjct: 99 ELNFMALNGRAI--RVMYSV-------------------RDPSLRKSGVGNIFIKNLDKS 137
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ + L FS G I S KV D G +KG+GFV + + E A +A++ +G +L+ K +
Sbjct: 138 IDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQV 197
Query: 365 YVA 367
YV
Sbjct: 198 YVG 200
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++LYV +L VTD +L + F+ F ++ S +V +D TG S G+V F +P +A RAI
Sbjct: 321 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-TGVSRGSGFVAFSTPEEASRAI- 378
Query: 72 VKNHTQLHGKML 83
T+++GKM+
Sbjct: 379 ----TEMNGKMI 386
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 248/574 (43%), Positives = 349/574 (60%), Gaps = 34/574 (5%)
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+
Sbjct: 82 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 141
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPS 185
SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L +
Sbjct: 142 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 200
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A ++TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +DA+
Sbjct: 201 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 260
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD +
Sbjct: 261 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 320
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLY
Sbjct: 321 DDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 379
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGYPSLYYTTPPGIVSQVP 418
VA+AQRKE+RQAHL QY Q MA + VI PSGY + P ++
Sbjct: 380 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY---FMAAIPQTQNRAA 436
Query: 419 PRPGLMYQPLGLRTG-WRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GNMLPQV 474
P L + W A G RP FQ P + P R M + +P+V
Sbjct: 437 YYPTNQLAQLARPSPRWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRV 492
Query: 475 GA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVSLGTFN 524
+ S+Q+ ++ + VP + + LN V++
Sbjct: 493 MSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQ-P 551
Query: 525 SGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELL 584
+ V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL
Sbjct: 552 AVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELL 610
Query: 585 LLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
+LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 611 HMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 644
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 164/289 (56%), Gaps = 21/289 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 115 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 172
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+E+F FG
Sbjct: 173 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 232
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 233 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 292
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 293 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 351
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 352 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 400
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L + F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 207 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 265
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 266 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 324
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 325 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 383
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 384 QRKEER-----QAHLTNQYMQRMAS 403
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/618 (40%), Positives = 355/618 (57%), Gaps = 57/618 (9%)
Query: 2 AVVPPTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVN 59
+V P+ T P ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN
Sbjct: 54 SVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVN 113
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
F + D +A++ N+T + G+ RI WS RDP RK G N+F+KNL +IDN L +
Sbjct: 114 FHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDT 173
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FG I+SCKVA E G +KG+GFV F++ ESANAAIE++NG + DK++YVG + +
Sbjct: 174 FSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRR 233
Query: 180 DRVLPSPA--AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVN 237
+R A A +TN+++KNLD+++TE+ + F +FG+I SL + +D+N RGFGFVN
Sbjct: 234 ERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVN 293
Query: 238 FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVY 297
+ N + A++A++ +N K LY RAQKK ERE+ LR +E+ + E++ KY+G N++
Sbjct: 294 YANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLF 353
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGY 357
+KN+ D+V DE LKA FS GTITSAK+M DE+G +KGFGFVC+++PEEA+KAV +
Sbjct: 354 IKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQR 413
Query: 358 MLHRKPLYVAIAQRKEDRQAHLQLQY-AQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVS 415
ML KPLYVA+AQRKE R++ L+ Q A++ ++ A +G P++ Y T P
Sbjct: 414 MLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAA--AGIPAVQYGATGP---- 467
Query: 416 QVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVG 475
L+Y P G P+P +NG +P V
Sbjct: 468 -------LIYGPGGY--------------------PIP----------AAVNGRGMPMVP 490
Query: 476 AHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM 535
H S + + G G + + + ++G A
Sbjct: 491 GHNGPMPMYPGMPPLSSLLEVRPGYPGMNARGPVPAQGRPMMMPGSVPSAGPAEAEAVPA 550
Query: 536 LNGM--------LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLL 587
+ GM LAA E +KQ+LGE LYP V + L KITGMLLEM NSELL LL
Sbjct: 551 VPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELL 610
Query: 588 ESPESLAVKVEEAVQVLK 605
E +L +V EA+ VL+
Sbjct: 611 EDDSALNERVNEAIGVLQ 628
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 267/643 (41%), Positives = 362/643 (56%), Gaps = 104/643 (16%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHP VT+ LF+ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSTPSYPMASLYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVV----------------------- 99
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
C E+G KG+GFV FET+E+A AIE +NG + D++++VG F + +R
Sbjct: 100 -----C----DENG-PKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPFKSRKEREA 149
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +EHL + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 150 ELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 209
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 210 EDAQKAVDVMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 269
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 270 DDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 328
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PS 404
KPLYVA+AQRKE+RQAHL Y Q MA + +I PS Y +
Sbjct: 329 KPLYVALAQRKEERQAHLTNLYMQRMASVRAVPNPLINPYQPAPPSAYFMAAIPQTQNRA 388
Query: 405 LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNR 463
YY PP ++Q+ P P W A G RP FQ P ++P R
Sbjct: 389 AYY--PPRQIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIHPAAPRPPF 431
Query: 464 GRMN--GNMLPQVGAHYMQQSSQSAASSKDSSNQQKG-----------------GQSKYV 504
M + +P+V S+Q A D+S Q KG Q KY
Sbjct: 432 STMRPASSQVPRV------MSTQRVA---DTSTQTKGPRPAAAAAAATPAVRTVPQYKYA 482
Query: 505 PNGR--IRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEK 562
R + LN V++ + V ++P + MLA+ P++QKQ+LGE L+PL++
Sbjct: 483 VGVRNPQQHLNAQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGEWLFPLIQA 540
Query: 563 HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
P L KITGMLLE+DNSELL +LESPESL KV+EAV VL+
Sbjct: 541 MHPSLAGKITGMLLEIDNSELLHILESPESLRSKVDEAVAVLQ 583
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 247/577 (42%), Positives = 349/577 (60%), Gaps = 53/577 (9%)
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 2 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 61
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYT 191
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A ++T
Sbjct: 62 DENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT 120
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++ M
Sbjct: 121 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE L+
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 240
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KP YVA+AQR
Sbjct: 241 KEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQR 299
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPGIV 414
KE+RQAHL Q+ Q MA ++ VI PSGY + YY PP +
Sbjct: 300 KEERQAHLTNQHMQRMASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPSQI 357
Query: 415 SQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GNML 471
+Q+ P P W A G RP FQ P + P R M + +
Sbjct: 358 AQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV 402
Query: 472 PQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVSLG 521
P+V + S+Q+ ++ + VP + + LN V++
Sbjct: 403 PRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ 462
Query: 522 TFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNS 581
+ V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+DNS
Sbjct: 463 Q-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNS 520
Query: 582 ELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
ELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 521 ELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 557
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 160/285 (56%), Gaps = 21/285 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 86
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 146
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 147 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 206
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFG
Sbjct: 207 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFG 265
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQ 279
FV F +P++A +A+ MNG ++ +K Y A AQ+K ER+ L +Q
Sbjct: 266 FVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQ 310
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 121 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 179
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 238
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K YV
Sbjct: 239 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALA 297
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN M+ + S
Sbjct: 298 QRKEER-----QAHLTNQHMQRMAS 317
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/431 (48%), Positives = 297/431 (68%), Gaps = 18/431 (4%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL P+V++ +L+D F++ + S+RVC+D T RS Y YVN+ + DA RA+E+
Sbjct: 5 SLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALEL 64
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++GK +RI +S RDP RKSG AN+F+KNL +IDN L + F +FGNI+SCKVA
Sbjct: 65 LNFTPVNGKAVRIMFSHRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFGNILSCKVA 124
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T +G+SKG+GFVQFE EESA AI+ +NG V +K+++VG F+++ +R K+ N
Sbjct: 125 TDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGPFVRRQER---EQNGKFNN 181
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL T++ L E F FGKI S ++ RD +G S+ FGFVNF+NPD+A +A+ +N
Sbjct: 182 VFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAVVGLN 241
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I K Y RAQKK+ERE LR ++E++RKERI +Y+G+N+Y+KN+DDDV DE L+
Sbjct: 242 GKKIEDKEWYVGRAQKKSEREAELRAKYEQERKERIDRYQGANLYLKNLDDDVDDERLRE 301
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F+ G+ITS KVMRD +G +KG GFV +S+PEEA++A +G M+ KP+YVA+AQRK
Sbjct: 302 IFADFGSITSCKVMRDAQGQSKGSGFVAYSAPEEANRATIEMNGKMIGSKPIYVAMAQRK 361
Query: 373 EDRQAHLQLQYAQHMAGIEGSSANVIPSGYP-------SLYYTTPPGIVSQVPPRP-GLM 424
E+R+A LQ Q+AQ + + A +P +P L+Y PP + +PP+P G
Sbjct: 362 EERRAKLQAQFAQMRSPV--GVATTMPMYHPGAPGLGQQLFYGQPPAL---MPPQPAGFA 416
Query: 425 YQP--LGLRTG 433
YQ LG+R G
Sbjct: 417 YQQQMLGMRPG 427
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +V+E L + F++ G++ S+ + RD S G+ +VN++N DA RALE
Sbjct: 4 TSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALE 63
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N + + K +R F R I K +N+++KN+D + ++
Sbjct: 64 LLNFTPVNGKA---------------VRIMFSH-RDPSIRKSGTANIFIKNLDRAIDNKA 107
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L F G I S KV D G +KG+GFV F E A A++ +G ++ K ++V
Sbjct: 108 LHDTFVSFGNILSCKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGPF 167
Query: 370 QRKEDRQ 376
R+++R+
Sbjct: 168 VRRQERE 174
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 545 PEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
PE Q+ +LGE+LYPLV++ + D K+TGMLLEMD +E+L LLE+P++L KV EA++VL
Sbjct: 538 PEHQRVMLGEQLYPLVDQLEHDHAGKVTGMLLEMDQTEILHLLEAPDALKAKVAEAMEVL 597
Query: 605 KLSEAKVSTQEA 616
+ ++ ST+ A
Sbjct: 598 RQAQRSPSTELA 609
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/455 (48%), Positives = 295/455 (64%), Gaps = 34/455 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAF 447
++Q+ P P W A G PP+ P +
Sbjct: 427 QIAQLRPSP-----------RWTAQGARPPSIPKY 450
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/392 (51%), Positives = 273/392 (69%), Gaps = 2/392 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SC+V
Sbjct: 71 TMNFDAIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCRV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
AT E+ SKG+GFV FETEE+AN AI +NG + +K++YVG+FI K+ +++L A
Sbjct: 131 ATDEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIPRKEREKMLGDKARC 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ ++ L+ F K+GKI S + D++G +RGFGFV+F+ PD A RA+E
Sbjct: 191 FTNVYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVE 250
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG +G + LY RAQKKAER+ L+ FE+ ++ER+ +Y+G N+YVKN+DD + DE
Sbjct: 251 ELNGKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVKNLDDALDDER 310
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F G ITSAKVM D G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 311 LRKEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALA 370
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSG 401
QRKEDR+AHL QY +AG+ + P G
Sbjct: 371 QRKEDRKAHLASQYMHRIAGMRMQMGQMFPPG 402
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 17/195 (8%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P +L++ +L +VTE L EKFS G + S+ + RD S G+ +VNF P DA
Sbjct: 6 PNYPMASLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN I +K + +Q R+ LR K NV++KN+D
Sbjct: 66 ERALDTMNFDAIKNKPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDKT 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ + FS G I S +V DE+ +KG+GFV F + E A+KA++ +G +L+ K +
Sbjct: 110 IDNKAMYDTFSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKV 169
Query: 365 YVAIAQRKEDRQAHL 379
YV +++R+ L
Sbjct: 170 YVGKFIPRKEREKML 184
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 55/72 (76%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLA +P QKQ+LGERL+PL+ + PDL KITGMLLE+DNSELL +LE ESL KVE
Sbjct: 604 MLAEATPHDQKQMLGERLFPLIHRMYPDLAGKITGMLLEIDNSELLHMLEHHESLKAKVE 663
Query: 599 EAVQVLKLSEAK 610
EAV VL+ +AK
Sbjct: 664 EAVAVLQAHQAK 675
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 268/681 (39%), Positives = 368/681 (54%), Gaps = 92/681 (13%)
Query: 4 VPPTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
P T + P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+
Sbjct: 32 APATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 91
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
RA++ N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F
Sbjct: 92 DTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFA 151
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 152 AFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 211
Query: 182 V--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
A +TN+++KN+D +V +E + F KFG+I S ++RD G SRGFGFVNF
Sbjct: 212 QSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFS 271
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ A+ A+E MN + S+ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVK
Sbjct: 272 THESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVK 331
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRD---------------------EK-------- 330
N+ DDV D++L+ F GTITSAKVMRD EK
Sbjct: 332 NLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEP 391
Query: 331 ----------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+
Sbjct: 392 AAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVAL 451
Query: 369 AQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY----------------- 407
AQRK+ R++ L+ +Q ++ + ++A + Y P+++Y
Sbjct: 452 AQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIPGAQRGGMF 511
Query: 408 TTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMN 467
PG++ +P RPG P + G R G P FQ P+ Q G N
Sbjct: 512 PPQPGMMMGMPGRPGQYPGPFPGQQGGRGVGPNQQIPPNFQGLPMGA-----MQGPGIPN 566
Query: 468 GNMLPQVGAHYMQQSSQSAA--SSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNS 525
G P V + + GG+ G++R G G ++G
Sbjct: 567 GMGYPMVQGQFGGGRGRGQVPGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGP 626
Query: 526 G---GVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSE 582
GV+ + L+A P+QQKQ+LGE LYP ++ +P+L KITGMLLEMDN+E
Sbjct: 627 ETPVGVLTAQ------ALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTE 680
Query: 583 LLLLLESPESLAVKVEEAVQV 603
LL LLE E+L KV+EA+ V
Sbjct: 681 LLGLLEDDEALRAKVDEALSV 701
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/450 (47%), Positives = 292/450 (64%), Gaps = 25/450 (5%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL VTD +LF+AF++ + SVRVC+D TT RS YGYVN+ +P DA RA+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N L+G+ +R+ +S RDP RKSGV N+F+KNL +SID+ L E F FG I+SCKVA
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVA 165
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQ++T+E+A AI+ LNG + DK++YVG F+ K R K+TN
Sbjct: 166 VDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTN 225
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL +++E L + F +FG S +I RD G S+GFGFVNF+N DDA RA++A+N
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K + +AQKK+ERE L+ +FE+ KE K +GSN+YVKN+D+ VTD++L+
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
HF+ GTITS KVMRD G+++G GFV FS+PEEA++A+ +G M+ KPLYVA+AQRK
Sbjct: 346 HFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRK 405
Query: 373 EDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGL 423
EDR+A LQ Q++Q +M G + P G P + Y PP ++ P+PG
Sbjct: 406 EDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMI----PQPGF 461
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLP 453
YQ VP RP SP+P
Sbjct: 462 GYQ----------QQLVPGMRPGG--SPMP 479
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 27/183 (14%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD+ VT+ L E F++ G++ S+ + RD S G+G+VN+ P DA RAL
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 250 -----AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
A+NG I +V+Y+ R + K N+++KN+D
Sbjct: 105 ELNFMALNGRAI--RVMYSV-------------------RDPSLRKSGVGNIFIKNLDKS 143
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ + L FS G I S KV D G +KG+GFV + + E A A++ +G +L+ K +
Sbjct: 144 IDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Query: 365 YVA 367
YV
Sbjct: 204 YVG 206
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++LYV +L VTD +L + F+ F ++ S +V +D +G S G+V F +P +A RAI
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAI- 384
Query: 72 VKNHTQLHGKML 83
T+++GKM+
Sbjct: 385 ----TEMNGKMI 392
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/419 (49%), Positives = 279/419 (66%), Gaps = 8/419 (1%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +VTD +LFDAFS+ + SVRVC+D T RS YGYVNF +P DA RAI+
Sbjct: 37 SLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQE 96
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+ L+GK +R+ +S RDP R+SG N+F+KNL ESID+ L + F FGNI+SCKVA
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFGNIVSCKVA 156
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQ+ EESA AIE LNG + DK++YVG F+++ +R + K+TN
Sbjct: 157 VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN 216
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL T++ L F ++GKI S ++ +D +G S+GFGFVNF+N DDA RA+E++N
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLN 276
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y RAQKK+ERE LR ++E+ KE K++ SN+YVKN+D ++DE+LK
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS GT+TS KVMRD G +KG GFV FS+PEEA++A++ G M+ KPLYVAIAQRK
Sbjct: 337 IFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Query: 373 EDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGLMYQ 426
EDR+A M G V P G P + Y PP + +PP+PG YQ
Sbjct: 397 EDRRAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQGPP---TMIPPQPGFGYQ 452
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 27/193 (13%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +VT+ L + FS+ G + S+ + RD S G+G+VNF NP DA RA++
Sbjct: 36 TSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQ 95
Query: 250 AMN-----GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+N G I +V+Y+ R + + N+++KN+D+
Sbjct: 96 ELNYIPLYGKPI--RVMYS-------------------HRDPSVRRSGAGNIFIKNLDES 134
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ + L FS G I S KV D G +KG+GFV +++ E A KA+ +G +L+ K +
Sbjct: 135 IDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194
Query: 365 YVAIAQRKEDRQA 377
YV R+++R +
Sbjct: 195 YVGPFLRRQERDS 207
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/456 (47%), Positives = 295/456 (64%), Gaps = 18/456 (3%)
Query: 4 VPPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
+P A +P ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVNF +
Sbjct: 30 LPAGAPSPSASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHN 89
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL SIDN L + F
Sbjct: 90 IVDGERALESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSA 149
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGNI+SCK+A E G SKG+GFV +ETEE+A+ AI++++G + DK++YVGR I + +R
Sbjct: 150 FGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHIPRKERQ 209
Query: 183 --LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
+ AK+TN+++KNLD + +E E FSKFG I S L+ DE G S+GFGF+NF+N
Sbjct: 210 AKIEQIRAKFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFEN 269
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+DA +A++ +N + K LY ARAQKK ERE+ LR Q+E+ + E++ KY+G N+Y+KN
Sbjct: 270 YEDAHKAVDTLNETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKN 329
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+DDD+ DE+L+ FS G ITSAKVM DEKG +KGFGFVCFSSP+EA+KAV +G M+
Sbjct: 330 LDDDIDDEKLRQEFSVYGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKAVTEMNGRMIG 389
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQ--HMAGIEGSSANVIPSGYPS--LYYTTPPGIVSQ 416
KP+YVA+AQRKE R++ L+ Q AQ M +G P P ++Y P + Q
Sbjct: 390 SKPIYVALAQRKEVRRSQLEAQMAQRNQMRMQQGMPMPGAPGYMPGAPMFYAPPGQFMPQ 449
Query: 417 -----------VPPRPGLMYQPLGLRTGWRANGFVP 441
+ PRP Q G+ GF P
Sbjct: 450 GQRPTVFAPNNMMPRPRWAPQQGQPVAGFPPQGFAP 485
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/462 (47%), Positives = 298/462 (64%), Gaps = 24/462 (5%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T P ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVNF +
Sbjct: 36 PAGTAPPSASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNI 95
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL SIDN L + F F
Sbjct: 96 VDGERALESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDPSIDNKALHDTFSAF 155
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCK+A E G SKG+GFV +ETEE+A+ AI+++NG + DK++YVGR + K +R
Sbjct: 156 GNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVNGMLLNDKKVYVGRHVPKKERQA 215
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ AK+TN+++KNLD V +E E +KFG I S L+ D+ G S+GFGFVNF+N
Sbjct: 216 KIEQFRAKFTNVYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENH 275
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++A+N + K+LY ARAQKK ERE+ LR Q+E+ + E++ KY+G N+Y+KN+
Sbjct: 276 EDAQKAVDALNETEHKGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNL 335
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DDD+ DE+L+ FS G ITSAKVM DEK +KGFGFVCFSSP+EA+KAV +G M+
Sbjct: 336 DDDIDDEKLRQEFSVYGVITSAKVMCDEKDTSKGFGFVCFSSPDEATKAVTEMNGRMIGS 395
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQH-----MAGIEGSSANVIPSGYPSLYYTTPPGIVSQ 416
KP+YVA+AQRKE R++ L+ Q AQ G+ A G P Y PPG
Sbjct: 396 KPIYVALAQRKEIRRSQLEAQMAQRNQMRMQQGMPMPGAPGYMPGAPMFY--APPG---- 449
Query: 417 VPPRPGLMYQPLGLRTG-WRANGFVPPTRPAFQV-SPLPVNP 456
+ P G R + NG +P R A Q P+P P
Sbjct: 450 -------QFMPQGQRPAVFAPNGMMPRPRWAPQQGQPMPGFP 484
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 249/615 (40%), Positives = 352/615 (57%), Gaps = 73/615 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQPADAELALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEESIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
+ G S+G GFV FET E+A AI +NG + +++++V F + +R L A +
Sbjct: 131 VCDDHG-SRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQEREAELGVRAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL D+ E+ L E FS+FGK S+ + RD++G SRGFGFVNF+ ++A++A+
Sbjct: 190 FTNVYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVM 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFE---EKRKERILKYKGSNVYVKNIDDDVT 306
MNG + ++LY RAQK AER+ L+ +F+ + +++R+ Y+G N+YVKN+DD +
Sbjct: 250 DMNGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYVKNLDDSID 309
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+E L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G +L KPLYV
Sbjct: 310 NERLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGCILGTKPLYV 368
Query: 367 AIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQ 426
A+AQRK++R+A L Q+ Q +NV G P L G Q
Sbjct: 369 ALAQRKDERKAILTNQFMQQRL------SNVWALGGPHL----------------GSFQQ 406
Query: 427 PLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQV-------GAHYM 479
P+ + PT P + + P + N++P++ G H +
Sbjct: 407 PV---------SYFLPTVPQVRAC---LQPDSQVEQEESFKANIVPRLLLPETAGGFHPV 454
Query: 480 QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGM 539
+ + S + Q V + ++P ++ +
Sbjct: 455 SKRADENPSLRMCPRHHVQVQEPAV----------------------CIPGQEPLTVSML 492
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
AAP +QKQ++GERLYPL+ L KITGMLLE+DNSELL +LESPESL K +
Sbjct: 493 AAAPL-HKQKQMIGERLYPLIYNVHTQLAGKITGMLLEIDNSELLFMLESPESLNAK--K 549
Query: 600 AVQVLKLSEAKVSTQ 614
+VLK +E ST+
Sbjct: 550 PGRVLKYTEGVDSTE 564
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 107/195 (54%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGFPLASLYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
AL+ MN VI K + +I+ Q R + K N+++KN+++
Sbjct: 66 ELALDTMNFEVI------------KGQPIRIMWSQ----RDPGLRKSGVGNIFIKNLEES 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ D+ G ++GFGFV F + E A +A++T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETREAAQQAISTMNGMLLNNRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V+ + +++R+A L
Sbjct: 169 FVSHFKSRQEREAEL 183
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 272/698 (38%), Positives = 374/698 (53%), Gaps = 109/698 (15%)
Query: 6 PTATTP------ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVN 59
P++TT ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN
Sbjct: 42 PSSTTATAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVN 101
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
+ + D RA+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 102 YNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FGNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + DK+++VG I K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKK 221
Query: 180 DRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFV 236
DR A +TN+++KN+D D T+E E F KFG+I S +ARD E+G SRGFGFV
Sbjct: 222 DRQSKFEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFV 281
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
NF + + A A++ +N S+ LY RAQKK ERE+ LR Q+E R E+ KY+G N+
Sbjct: 282 NFTSHESAAAAVDNLNEKDFKSQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNL 341
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRD---------------------------- 328
Y+KN+ DD+ DE+L+ FS GTITSAKVMRD
Sbjct: 342 YIKNLSDDIDDEKLRDLFSGYGTITSAKVMRDNLAAESSSDSEKEAKSEGKENEPPEESK 401
Query: 329 ----EKGINK---------------------GFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
EK K GFGFVCFSSP+EASKAV + M++ KP
Sbjct: 402 DEAAEKAETKDTKEAKTESKKADKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKP 461
Query: 364 LYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVP- 418
LYVA+AQRK+ R++ L+ +Q + + ++A +P + P ++Y PG + +P
Sbjct: 462 LYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPPVFYG--PGQQNFLPN 519
Query: 419 PRPGLMYQPLGL---------------------RTGWRANGFVPPTRPAFQVSPLPVNPK 457
R G+ +Q G+ G N +PP LP++ +
Sbjct: 520 QRGGMPFQQPGMVIPQMPGGRHGQFSGFPGQQGGRGMNPNQQIPPNAYGLGAQGLPISMQ 579
Query: 458 HNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPN---GRIRELNK 514
N +N + QV A + + Q A N Q G PN GR + +
Sbjct: 580 GGMPN--GLNYPQMAQVQAPFGRGRGQVPAVQGMPPNVQGMG-----PNAQFGRGMPMQQ 632
Query: 515 G------SGVSLGTFNSGGVM--ARKPDMLN-GMLAAPSPEQQKQILGERLYPLVEKHKP 565
G +G G + G P L ML A P QQKQ+LGE +YP + H+P
Sbjct: 633 GMGRPGQAGRGQGPAQAAGQRDETSSPSGLTLQMLNAAPPAQQKQMLGEAIYPKIHAHQP 692
Query: 566 DLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
+L KITGMLLEMDN+ELL L++ +L KV+EA+ V
Sbjct: 693 ELAGKITGMLLEMDNAELLALVDDDTALKAKVDEALTV 730
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 296/447 (66%), Gaps = 30/447 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGF 439
++Q+ P P + G R GF
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGF 446
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 575 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 634
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 635 EAVAVLQAHHAK 646
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 263/642 (40%), Positives = 358/642 (55%), Gaps = 57/642 (8%)
Query: 6 PTAT--TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PT + T ASLYVGDLHPDV + LF+ FS + S+RVC+D+ T S Y YVNF P
Sbjct: 24 PTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N LHGK +RI WS RDP R+SG N+F+KNL + IDN + + F F
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLF 143
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS--DR 181
GNI+SCKVA E+G SKG+GFV FETEE+A AI+ +NG + K+++VG+F ++ +R
Sbjct: 144 GNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNR 203
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L A KYTN+++KN +E L + F+K+G I S + + G S+GFGFV F P
Sbjct: 204 ELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSCDVMTSD-GKSKGFGFVAFAEP 262
Query: 242 DDARRALEAMNGS-VIGSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
++A A++A+N S V GS + L+ RAQKK+ER L+ + E+ + ER+ KY+G N+YVK
Sbjct: 263 EEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVK 322
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+D+ V DE LK F G ITSAKVM DE G +KGFGFVCF PEEA+ AV + M+
Sbjct: 323 NLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMV 382
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP 419
KPLYVA+AQRKEDR+A L QY Q +A + ++ P G + P
Sbjct: 383 CSKPLYVALAQRKEDRRAQLASQYMQRLASMR-------------MHTNVPGGGLYPQQP 429
Query: 420 RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYM 479
+PG Y R G RP + P P N+ + G ++G
Sbjct: 430 QPGPGYYVANPMQQQRNFGGPQMVRPGGRWGPQNQYPVQNQYMMAQGPGVYQNRMGRPQN 489
Query: 480 QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKG-----------------SGVSLGT 522
QQ S + S Q G + + P R N G GT
Sbjct: 490 QQGGPRGPSQQYSQVAQGGIRMQGPP----RPQNAGVQQPNVQRPPPQQPQQQRPAPTGT 545
Query: 523 --------------FNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL- 567
G V+ + + + MLAA +P++QKQ+LGER+Y L+EK P
Sbjct: 546 KAQPQAYQQPYQQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHK 605
Query: 568 -VAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSE 608
KITGM+LE+DNSEL+++L+ E KV+EA VL S+
Sbjct: 606 DAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLASSQ 647
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 296/447 (66%), Gaps = 30/447 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGF 439
++Q+ P P + G R GF
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGF 446
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 573 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 632
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 633 EAVAVLQAHHAK 644
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 296/447 (66%), Gaps = 30/447 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGF 439
++Q+ P P + G R GF
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGF 446
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 557 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 616
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 617 EAVAVLQAHHAK 628
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 242/561 (43%), Positives = 335/561 (59%), Gaps = 39/561 (6%)
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++V N T +GK +R+ +S RDP RKSG N+F+KNL ++ID+ L + F FG+
Sbjct: 5 AARALDVLNFTPXNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGS 64
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCKVA G+SKG+GFVQF+ EESA AIE LNG + DK++YVG F++K +R
Sbjct: 65 ILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVV 124
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
+K+ N+F+KNL TEE L + FS+FG + S+++ RD +G SR FGFVNF+N DDA
Sbjct: 125 DKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAA 184
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
RA++ +NG ++ K Y +AQKK+ERE L+H+FE+ KE KY+G+N+Y+KN+DD +
Sbjct: 185 RAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSI 244
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
D++LK F+ GTITS KVMRD GI++G GFV FS+P+EAS+A+ +G M+ KPLY
Sbjct: 245 GDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLY 304
Query: 366 VAIAQRKEDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQ 416
VA+AQRKEDR+A LQ Q++Q M + P G P + Y PP +
Sbjct: 305 VALAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIYPPGGPGIGQQLFYGQAPPAM--- 361
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
+P + G YQ VP RP P+P Q + + GA
Sbjct: 362 IPSQGGFGYQ----------QQLVPGIRPG--GGPMPNFFVPMVQQGQQGQRPGGRRAGA 409
Query: 477 HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTF----NSGGVMARK 532
Q +Q +GG+ P GR GV+ G F + GG+ R
Sbjct: 410 ---VQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVAMPGVAGGMFSVPYDMGGMPLRD 466
Query: 533 P--------DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELL 584
L LA +P+QQ+ +LGE LYPLVE+ +PD AK+TGMLLEMD +E+L
Sbjct: 467 AAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVL 526
Query: 585 LLLESPESLAVKVEEAVQVLK 605
LLESPE+L KV EA++VL+
Sbjct: 527 HLLESPEALKAKVAEAMEVLR 547
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 156/289 (53%), Gaps = 17/289 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +L + L D FS F S+ S +V DS+ G+S YG+V F + A++AIE
Sbjct: 39 GNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSS-GQSKGYGFVQFDNEESALKAIE 97
Query: 72 VKNHTQLHGKMLRISWSC----RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
N L+ K + + RD KS N+FVKNL E+ L + F FG +
Sbjct: 98 KLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLT 157
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR------ 181
S V DGKS+ GFV FE + A A++ LNG V DK YVG+ KKS+R
Sbjct: 158 SIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKH 217
Query: 182 ----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF 235
+ A KY NL++KNLD + ++ L E F+ FG I S + RD NG SRG GF
Sbjct: 218 RFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGF 277
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKR 284
V F PD+A RAL MNG ++ SK LY A AQ+K +R L+ QF + R
Sbjct: 278 VAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIR 326
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 247/606 (40%), Positives = 348/606 (57%), Gaps = 54/606 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
SLYVGDLHPDVT+ L++ FS + S+RVC+DS T +S Y YVNF +A R ++
Sbjct: 12 TSLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLD 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L GK +RI WS RDP RKSG+ N+F+KNL +SIDN + + F FGNI+SCKV
Sbjct: 72 TMNFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKV 131
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
A +DG SKG+GFV FE+ E+AN AIE +NG + K++YVG+FI +++R + + K
Sbjct: 132 AIDDDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEIGEKSKK 191
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
YTN+++KN ++T+E L + F +G I S ++ + +GTS+GFGF+ F+ P+ A +A+
Sbjct: 192 YTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEKAVT 251
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MN + LY RAQKK+ER + L+ +E+ + ER + +G+NVY+KN+DD ++
Sbjct: 252 EMNNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDR 311
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FSQ G ITSAKVM E G +KGFGFVCFS+PEEASKA+ G M+ KP+YVA+A
Sbjct: 312 LRKEFSQFGAITSAKVM-TEGGRSKGFGFVCFSTPEEASKAITEMDGRMIGSKPIYVALA 370
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QR EDR+A+L AQ M I + + P L TTP ++ +P M Q
Sbjct: 371 QRYEDRRAYLS---AQCMQRIRHQTMS------PPL--TTPQFLIPTLPRFYNHMAQ--- 416
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASS 489
+R R VP + + LP P + PQV Q S+
Sbjct: 417 IRPTPRWTAQVPRLNGTYNMPLLPATPYRSTSR---------PQV---------QINRSA 458
Query: 490 KDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQK 549
+ + QQ VP R S R + G P + K
Sbjct: 459 RPITGQQ-------VPIARPNSKYTASAP-----------PRGVSVGVGNGGDPGAD-DK 499
Query: 550 QILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEA 609
++LGER+Y ++EK P++ KITGMLLE+D SEL L+ + SL KVEEAV VL+
Sbjct: 500 RMLGERMYRVIEKTYPEIAGKITGMLLEIDISELKALVNNEGSLKAKVEEAVAVLQAHNK 559
Query: 610 KVSTQE 615
++ Q+
Sbjct: 560 GLTVQD 565
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/404 (50%), Positives = 282/404 (69%), Gaps = 9/404 (2%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF---LSPHDAIR 68
+SLYVGDL DVT+ +LF+ FS+ +AS+RVC+D+ T RS Y YVN+ L P A R
Sbjct: 38 SSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAER 97
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
A++ N+T L G+ +RI WS RDP RKSGV N+F+KNL S+DN L + F FGNI+S
Sbjct: 98 ALDQLNYTPLVGRPMRIMWSHRDPAFRKSGVGNIFIKNLDRSVDNKALHDTFSAFGNILS 157
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
CKVA G+SKG+GFV FE +ESA AIE +NG + K++YVG F+++S+R S
Sbjct: 158 CKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGPFLRRSERSSDS-EV 216
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
K+TN+F+KNLD V+++ + F++ G + S +I RD+ G S+GFGF+NF+ P+ A A+
Sbjct: 217 KFTNVFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAV 276
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+A+NG + K LY RAQKKAERE +LR +FEE R ERI KY+G N+YVKN+ DD+ DE
Sbjct: 277 QALNGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDDE 336
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FSQ GTITSAKVM D G ++GFGFVC++SPEEA++AV +G M+ KP+YVA+
Sbjct: 337 TLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYVAL 396
Query: 369 AQRKEDRQAHLQLQYAQHMA---GIEGSSANVI--PSGYPSLYY 407
AQR++ R+A L+ QY Q +A G G A + P G P ++Y
Sbjct: 397 AQRRDVRRAQLEQQYQQRVAMPPGPRGPMAPGMFPPGGAPPMFY 440
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/449 (47%), Positives = 298/449 (66%), Gaps = 16/449 (3%)
Query: 2 AVVPPTAT--TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVN 59
VVP A SLYVGDL +V D +L+D F++ + SVRVC+D T RS YGYVN
Sbjct: 20 GVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVN 79
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
F +P DA RA++V N T ++ K +R+ +S RDP +RKSG AN+F+KNL ++ID+ L +
Sbjct: 80 FTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDT 139
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F +FG I+SCK+AT G+SKG+GFVQFE E+SA AI+ LNG + DK+++VG F++K
Sbjct: 140 FSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQ 199
Query: 180 DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
DR K+ N+++KNL TE+ L +F +G I S ++ RD +G S+ FGFVNF+
Sbjct: 200 DRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFE 259
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERIL-KYKGSNVYV 298
N +DA +A+EA+NG + K Y +AQKK+EREQ L+ +FE+ KE ++ K++G N+Y+
Sbjct: 260 NAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYL 319
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM 358
KN+DD +TDE+LK FS+ GTITS K+MRD G+++G GFV FS+PEEAS+A+ +G M
Sbjct: 320 KNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKM 379
Query: 359 LHRKPLYVAIAQRKEDRQAHLQLQYAQHM-AGIEGSSA---NVIPSGYPSL-----YYTT 409
+ KPLYVA+AQRKEDR+A LQ Q++Q I S A + P G P L Y
Sbjct: 380 IVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQG 439
Query: 410 PPGIVSQVPPRPGLMYQPLGLRTGWRANG 438
PP + +PP+ G YQ L G R G
Sbjct: 440 PPAM---MPPQAGFGYQ-QQLVPGMRPGG 464
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/462 (47%), Positives = 299/462 (64%), Gaps = 30/462 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPV 454
++Q+ P P + G R GF Q P P
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQAGPRPT 461
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 558 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 617
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 618 EAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/462 (47%), Positives = 299/462 (64%), Gaps = 30/462 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPV 454
++Q+ P P + G R GF Q P P
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGFQGMPSAIRQAGPRPT 461
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 574 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 633
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 634 EAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/429 (49%), Positives = 287/429 (66%), Gaps = 23/429 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRP 421
++Q+ P P
Sbjct: 427 QIAQLRPSP 435
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 241/601 (40%), Positives = 339/601 (56%), Gaps = 51/601 (8%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T ASLYVG+L+P V + LF+ FS ++S+RVC+D+ T +S Y YVNF D +A
Sbjct: 48 TSASLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKA 107
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
IE N++ + G+ RI WS RDP R++G N+F+KNL +IDN L + F FG I+SC
Sbjct: 108 IEELNYSLIDGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGKILSC 167
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPA 187
KVAT E G SK GFV +ET E+A AAIEN+NG + D+ +YVG+ + K DR
Sbjct: 168 KVATDEQGNSKCFGFVHYETAEAAKAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMK 227
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A +TN+++KN+D +EE + + F +GKI SL + +D G S+GFGFVNF++ + A +A
Sbjct: 228 ANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKA 287
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
+E +N I + LY RAQKK ER + L+ Q+E R E++ KY+G N++VKN+DD +
Sbjct: 288 VEELNDKDINGQKLYVGRAQKKRERIEELKRQYEAARLEKLSKYQGVNLFVKNLDDSIDS 347
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
+L+ F GTITSA+VM DE G +KGFGFVCFSSPEEA+KA+ + M H KPLYVA
Sbjct: 348 VKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVA 407
Query: 368 IAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTTPPGIVSQVPPRPGLM 424
+AQRK+ R++ L Q+Q M ++ IP + P ++Y PG PP
Sbjct: 408 LAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQPGF---FPPN---- 460
Query: 425 YQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQ 484
R + P P V + P + R NG +P G +
Sbjct: 461 ---------GRGSAPFPGPNPQMMVPRGQIPPPQGQWPRAGPNGQPVPVYGIPPVYGDFA 511
Query: 485 SAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPS 544
+A + QQ+G Y PN R+ KG R L +LA+
Sbjct: 512 AA----NGGRQQRG----YYPN---RQNQKG---------------RPQKDLAALLASAP 545
Query: 545 PEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA 600
+QQK+ILGE LYP + +P+ KITGM+L++DN E+L LLE E+A
Sbjct: 546 VDQQKRILGEELYPKIVSTGRAQEPEAAGKITGMMLDLDNQEILALLEDDALFNNHFEDA 605
Query: 601 V 601
+
Sbjct: 606 L 606
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 296/447 (66%), Gaps = 30/447 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGF 439
++Q+ P P + G R GF
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGF 446
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 576 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 635
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 636 EAVAVLQAHHAK 647
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 296/447 (66%), Gaps = 30/447 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGF 439
++Q+ P P + G R GF
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGF 446
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 547 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 606
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 607 EAVAVLQAHHAK 618
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 257/661 (38%), Positives = 358/661 (54%), Gaps = 74/661 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D +A+E
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 180
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR A
Sbjct: 181 AQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 240
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN++ +VT++ E F KFG++ S +ARD+ G +RGFGFVNF + A +A++
Sbjct: 241 FTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVD 300
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+ DDV DE+
Sbjct: 301 DLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGVNLYIKNLGDDVDDEK 360
Query: 310 LKAHFSQCGTITSAKVMRD-----------------------------------EK---- 330
L+A FS+ G ITSAKVMRD EK
Sbjct: 361 LRAMFSEYGPITSAKVMRDSLIEGEEKDEKDKENKKEGETKEEEEKEGSAEKKTEKKGDR 420
Query: 331 --GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY-AQHM 387
G +KGFGFVCFS+P++A+KAV + M+ KPLYVA+AQRK+ R++ L+ A++
Sbjct: 421 KLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARNQ 480
Query: 388 AGIEGSSANVIPSGYPSLYYTTPPGIVSQVP---PRPGLMYQPL--------GLRTGWR- 435
++ ++A +G P Y P Q P P PG P G R G
Sbjct: 481 LRMQQAAAQ---AGMPQQYMQAPVYYAGQQPGFMPAPGGRGVPFPQGGIPVQGGRPGQYP 537
Query: 436 ----ANGFVPPTR------PAFQVSP--LPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
G VPP + P Q P P N G++ + G
Sbjct: 538 YQQGGRGGVPPQQMPPMGYPINQFGPGAFPPNTPQYMAAMGQVGALGGGRGGPAGRGPQG 597
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAP 543
A + G + P G + G G S + A L LA
Sbjct: 598 IPAGIPQGLQGAPANGGGRGTPRGNANFMAAGRGASPVPGAPADLSAGS--FLQAQLATT 655
Query: 544 -SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQ 602
P+ QKQI+GE L+P ++ +P L KITGMLLEMDN+EL+ L E +L VKV+EA+
Sbjct: 656 QDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDDNALNVKVQEALA 715
Query: 603 V 603
V
Sbjct: 716 V 716
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 296/447 (66%), Gaps = 30/447 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGF 439
++Q+ P P + G R GF
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGF 446
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 574 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 633
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 634 EAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 297/447 (66%), Gaps = 30/447 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGF 439
++Q+ P P + G R GF
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGF 446
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 559 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 618
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 619 EAVAVLQAHHAK 630
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 296/447 (66%), Gaps = 30/447 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGF 439
++Q+ P P + G R GF
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGF 446
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 560 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 619
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 620 EAVAVLQAHHAK 631
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 296/447 (66%), Gaps = 30/447 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGF 439
++Q+ P P + G R GF
Sbjct: 427 QLAQMRPNP-------RWQQGGRPQGF 446
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 574 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 633
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 634 EAVAVLQAHHAK 645
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 256/647 (39%), Positives = 364/647 (56%), Gaps = 62/647 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTG-----RSTCYGYVNFLSPHD- 65
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYAYINFQQPADG 70
Query: 66 ------AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
A RA++ N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L +
Sbjct: 71 EEQAQRAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDT 130
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FGNI+SCKV E G S+G GFV FET E+A AI +NG + D++++VG F +
Sbjct: 131 FSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 189
Query: 180 DRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVN 237
+R L + A ++TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVN
Sbjct: 190 EREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVN 249
Query: 238 FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVY 297
F+ ++A++A+ MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+Y
Sbjct: 250 FEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLY 309
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSP------------- 344
VKN+DD + D++L+ FS G ITSA KG+ G+ F + P
Sbjct: 310 VKNLDDSIDDDKLRKEFSPYGVITSA------KGVGAGYPFWGSADPVGTCSPSAALSGL 363
Query: 345 -EEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GY 402
EEA+KAV +G ++ KPLYVA+AQRKE+R+A L QY Q ++ + S ++ S
Sbjct: 364 KEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQ 423
Query: 403 PSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQN 462
PS Y+ + VP P + + G V PT+PA + + P P
Sbjct: 424 PSSYF------LPAVPQPPA--------QAAYYGCGPVTPTQPAPRWTSQPPRPSCASMV 469
Query: 463 RGRMNGNMLPQVGAHYMQQSSQ--------SAASSKDSSNQQKGGQSKYVPNGRIRELNK 514
R + P + Q S+Q ++ + GG P GR K
Sbjct: 470 RPPVMPRRPPAHISSVRQASTQVPRMVPHTQRVANIGTQTTGPGGVGCCTP-GRPLLPYK 528
Query: 515 GSGVSLGTFNSGGVMARKPD---MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKI 571
S + T+ P + MLAA +QKQ++GERLYPL+ L KI
Sbjct: 529 CSSAAHSTYRVQEPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKI 588
Query: 572 TGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
TGMLLE+DNSELLL+LESPESL K++EAV VL+ +A + +H
Sbjct: 589 TGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQAHQAVEQPKAYMH 635
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/423 (49%), Positives = 288/423 (68%), Gaps = 8/423 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLY--YTTPPGIVSQVPPRPGLMYQP 427
QRKE+R+AHL QY Q +AG+ AN I + + Y P V Q ++Y
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPA--VPQASKECQVLYAS 426
Query: 428 LGL 430
LGL
Sbjct: 427 LGL 429
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 55/67 (82%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 560 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 619
Query: 599 EAVQVLK 605
EAV VL+
Sbjct: 620 EAVAVLQ 626
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/389 (51%), Positives = 275/389 (70%), Gaps = 4/389 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI 398
QRKE+R+AHL QY Q +AG+ AN I
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAI 397
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV
Sbjct: 564 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVS 623
Query: 599 EAVQ-VLKLSEAKV---STQEAIHP 619
E VL+ S+ ++ T E + P
Sbjct: 624 EVSDPVLQPSDWELGHSGTTERVRP 648
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/379 (53%), Positives = 270/379 (71%), Gaps = 5/379 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCK+
Sbjct: 71 TMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKI 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A+ E+G SKG+GFV FETEE+A AIE +NG + K++YVG+FI + +R+ L +
Sbjct: 131 ASDENG-SKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALLGDKMKR 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+ N+++KN ++ ++ + E F FGKI S + DE G SRGFGFV+++ P+ A +A++
Sbjct: 190 FNNVYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVD 249
Query: 250 AMNGSVI-GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG + G KVLYA RAQKKAER+ L+ +FE+ + ERI +Y+G N+YVKN+DD V DE
Sbjct: 250 NLNGMELGGGKVLYAGRAQKKAERQAELKDKFEKIKMERINRYQGVNLYVKNLDDVVDDE 309
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FSQ GTITSA+VM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 310 RLRKEFSQFGTITSARVM-SEGGRSKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYVAL 368
Query: 369 AQRKEDRQAHLQLQYAQHM 387
AQRKEDR+AHL QY Q M
Sbjct: 369 AQRKEDRRAHLASQYMQRM 387
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L DVTE L EKFS G + S+ + RD S G+ +VNF P DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN I + + +I+ Q R + K NV++KN+D
Sbjct: 66 ERALDTMNFDTIKGRPI------------RIMWSQ----RDPSLRKSGVGNVFIKNLDKS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S K+ DE G +KG+GFV F + E A +A+ +G +L+ K +
Sbjct: 110 IDNKALYDTFSAFGNILSCKIASDENG-SKGYGFVHFETEEAARQAIEKVNGMLLNGKKV 168
Query: 365 YVAIAQRKEDRQAHL 379
YV +++R A L
Sbjct: 169 YVGKFIPRKERIALL 183
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 260/673 (38%), Positives = 366/673 (54%), Gaps = 85/673 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D +A+E
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 179
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR A
Sbjct: 180 AQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 239
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN++++VT+E E F+KFG++ S +ARD+ G SRGFGFVNF + A +A++
Sbjct: 240 FTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVD 299
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+ DDV D++
Sbjct: 300 ELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDK 359
Query: 310 LKAHFSQCGTITSAKVMRD-----------------------------------EK---- 330
L+A FS+ G ITSAKVMRD EK
Sbjct: 360 LRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDR 419
Query: 331 --GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQH 386
G +KGFGFVCFS+P++A+KAV + M+ KPLYVA+AQRK+ R++ L+ +Q
Sbjct: 420 KLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARNQ 479
Query: 387 MAGIEGSSANVIPSGY---PSLYYTTPPGIVSQ-----VP-PRPGLMYQPLGLRTGWR-- 435
+ + ++ +P Y P Y PG + VP P+ G++ G R G
Sbjct: 480 LRMQQAAAQAGMPQQYMQAPVYYAGQQPGFMPAPGGRGVPFPQGGIVPGVQGGRPGQYPY 539
Query: 436 ---ANGFVPPTR------PAFQVSP--LPVNPKHNRQNRGRMNGNM-------------L 471
G VPP + P Q P P N G++ +
Sbjct: 540 QQGGRGGVPPQQMPPMGYPINQFGPGAFPPNTPQYMAAMGQVGALGGGRGGPAGRGPQGI 599
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
P G Q + + Q GG + P G + G G S + A
Sbjct: 600 P-AGIPQGLQGGPAVPGYPPAGRPQNGG-GRGTPRGNANFMAAGRGASPIPGAPADLSAG 657
Query: 532 KPDMLNGMLAAP-SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
L LA P+ QKQI+GE L+P ++ +P L KITGMLLEMDN+EL+ L E
Sbjct: 658 S--FLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDD 715
Query: 591 ESLAVKVEEAVQV 603
+L VKV+EA+ V
Sbjct: 716 NALNVKVQEALAV 728
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/422 (48%), Positives = 288/422 (68%), Gaps = 11/422 (2%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
PT SLYVGDL P+V++ +L++ FS+ + S+RVC+D T RS Y YVN+ + D
Sbjct: 18 PTQFVSTSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQD 77
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA+E+ N T ++GK +RI +S RDP RKSG AN+F+KNL +SIDN L + F FGN
Sbjct: 78 ATRALELLNFTGVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGN 137
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCKVAT G+SKG+GFVQFE EESA AIE +NG + DK+++VG F+++ +R
Sbjct: 138 ILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQERDQAG 197
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
+K+ N+++KNL T++ L + F +G I+S ++ RD +G S+ FGFVNF++PDDA
Sbjct: 198 GVSKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAA 257
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+EA+ G K Y RAQKK+ERE LR +FE++RKERI KY+G N+Y+KN+DD V
Sbjct: 258 KAVEALQGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTV 317
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE+++ F++ GTITS KVMRD +G +KG GFV FSSP+EA++AV +G M+ KPLY
Sbjct: 318 DDEKIRELFAEYGTITSCKVMRDHQGQSKGSGFVAFSSPDEATRAVTEMNGKMVGNKPLY 377
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQV------PP 419
VA+AQRKE+R+ LQ +AQ + +P+ P +Y+ PG+ Q+ PP
Sbjct: 378 VALAQRKEERRMRLQAAFAQMRTHV----GPAVPTSLP-MYHPGAPGMGPQMSYYGQHPP 432
Query: 420 RP 421
P
Sbjct: 433 GP 434
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 259/672 (38%), Positives = 366/672 (54%), Gaps = 84/672 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D +A+E
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 179
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR A
Sbjct: 180 AQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 239
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN++++VT+E E F+KFG++ S +ARD+ G +RGFGFVNF + A +A++
Sbjct: 240 FTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAVD 299
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+ DDV D++
Sbjct: 300 ELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDK 359
Query: 310 LKAHFSQCGTITSAKVMRD----------------------------------EK----- 330
L+A FS+ G ITSAKVMRD EK
Sbjct: 360 LRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGEAEEEQKEGSEKKTEKKGDRK 419
Query: 331 -GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQHM 387
G +KGFGFVCFS+P++A+KAV + M+ KPLYVA+AQRK+ R++ L+ +Q +
Sbjct: 420 LGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARNQL 479
Query: 388 AGIEGSSANVIPSGY---PSLYYTTPPGIVSQ-----VP-PRPGLMYQPLGLRTGWR--- 435
+ ++ +P Y P Y PG + VP P+ G++ G R G
Sbjct: 480 RMQQAAAQAGMPQQYMQAPVYYAGQQPGFMPAPGGRGVPFPQGGIVPGVQGGRPGQYPYQ 539
Query: 436 --ANGFVPPTR------PAFQVSP--LPVNPKHNRQNRGRMNGNM-------------LP 472
G VPP + P Q P P N G++ +P
Sbjct: 540 QGGRGGVPPQQMPPMGYPINQFGPGAFPPNTPQYMAAMGQVGALGGGRGGPAGRGPQGIP 599
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARK 532
G Q + + Q GG + P G + G G S + A
Sbjct: 600 -AGIPQGLQGGPAVPGYPPAGRPQNGG-GRGTPRGNANFMAAGRGASPIPGAPADLSAGS 657
Query: 533 PDMLNGMLAAP-SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
L LA P+ QKQI+GE L+P ++ +P L KITGMLLEMDN+EL+ L E
Sbjct: 658 --FLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDDN 715
Query: 592 SLAVKVEEAVQV 603
+L VKV+EA+ V
Sbjct: 716 ALNVKVQEALAV 727
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/455 (47%), Positives = 293/455 (64%), Gaps = 37/455 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKD---LFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 246
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 247 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 306
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 307 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 365
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 366 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 423
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAF 447
++Q+ P P W A G PP+ P +
Sbjct: 424 QIAQLRPSP-----------RWTAQGARPPSIPKY 447
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 157/296 (53%), Gaps = 19/296 (6%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDE 223
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 279
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/429 (49%), Positives = 291/429 (67%), Gaps = 23/429 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRP 421
++Q+ P P
Sbjct: 427 QLAQMRPNP 435
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 274/689 (39%), Positives = 362/689 (52%), Gaps = 109/689 (15%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E
Sbjct: 52 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 111
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 112 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 171
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR A
Sbjct: 172 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 231
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNLDS++ ++ + F KFG+I S ++RD+ G SRGFGFVNF + A+ A+E
Sbjct: 232 FTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVE 291
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MN I S+ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+ DD+ DE+
Sbjct: 292 EMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEK 351
Query: 310 LKAHFSQCGTITSAKVMRD--------------EKGINK--------------------- 334
L+ F GTITSAKVMRD EK NK
Sbjct: 352 LRELFGPYGTITSAKVMRDTNVERESSPESAGKEKEANKENDKEATPEAEKAEEKAEEKP 411
Query: 335 -----------------------GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
GFGFVCFSSP+EASKAV + M++ KPLYVA+AQR
Sbjct: 412 AESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 471
Query: 372 KEDRQAHLQLQ---------------------YAQHMAGIEGSSANVIPSGYPSLYYTTP 410
K+ R++ L+ Y Q IP G + +
Sbjct: 472 KDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQ 531
Query: 411 PGIVSQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAF-QVSPLPVN-----------PK 457
PG+V +P RPG P + G R G P F Q P+ + P+
Sbjct: 532 PGMVMGIPGGRPGQYPGPFPGQQGGRGMGPNQQIPPNFAQGIPMGMQGPGAIPNGMGYPQ 591
Query: 458 HNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSN---QQKGGQSKYVPNGRIRELNK 514
+ GR G QV M Q + QQ GQ + GR +
Sbjct: 592 MAQVQFGRGAGGR-GQVPGMPMGQGMRGGPGYGQGRGVPVQQ--GQIRPGQGGRGQNAAA 648
Query: 515 GSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGM 574
+G G +GGV A+ L A P QQKQ+LGE LYP ++ +P+L KITGM
Sbjct: 649 PAGPQEGA--AGGVNAQ-------TLGAAPPAQQKQMLGEALYPKIQAQQPELAGKITGM 699
Query: 575 LLEMDNSELLLLLESPESLAVKVEEAVQV 603
LLEMDN+ELL LLE E+L KV+EA+ V
Sbjct: 700 LLEMDNTELLSLLEDEEALRAKVDEALSV 728
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 259/661 (39%), Positives = 369/661 (55%), Gaps = 63/661 (9%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ ++AS+RVC+D+ T RS Y YVN+ S D
Sbjct: 53 PHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSD 112
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 113 GEKALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 172
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K DR
Sbjct: 173 ILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 232
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A +TN+++KN++ + +++ E F ++G+I S +ARD++G SRGFGFVN+ +
Sbjct: 233 EEMKANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHES 292
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A++ +NG + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+DD
Sbjct: 293 AYKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDD 352
Query: 304 DVTDEELKAHFSQCGTITSAKVMRD--------------------------------EK- 330
DV DE+L+ FS+ G ITSAKVMRD EK
Sbjct: 353 DVDDEKLRHMFSEFGPITSAKVMRDAPSDGSDEEKEDEQEAEPKKEGNVVEADEEGSEKK 412
Query: 331 -----GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQY 383
G +KGFGFVCFS+P++A+KAV M++ KPLYVA+AQRK+ R++ L+ +Q
Sbjct: 413 GDKKFGKSKGFGFVCFSNPDDATKAVAEMSQRMINGKPLYVALAQRKDVRKSQLEASIQA 472
Query: 384 AQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQ----VP-PRPGL-MYQPLGLRTGW- 434
+ + ++A +P Y P ++Y PG + Q +P P+PG+ M G R G
Sbjct: 473 RNQLRMQQAAAAAGMPQQYMQPPVFYGQQPGFMPQGGRGMPFPQPGMGMAGVQGGRPGQF 532
Query: 435 ------RANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
G VP P P P++ + + M Q A +
Sbjct: 533 PGYPQQGGRGGVPQQMPPNMYMPGQFPPQYGQPGTPQFIAAMQAQQVALGGGRGGPQGGR 592
Query: 489 SKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVM-ARKPDMLNG-----MLAA 542
N GG Y PN R +G N+ G A +P+ NG L++
Sbjct: 593 GMPPPNAGPGGMPGYPPNSRQGGAGRGGNGRNNNGNTNGPSPAARPEGNNGSILQQQLSS 652
Query: 543 PSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQ 602
P QQKQILGE ++P ++ +L KITGMLLEMDN+EL+ L+E +L KVEEA+
Sbjct: 653 APPAQQKQILGEVIFPKIQAINAELAGKITGMLLEMDNTELISLIEDDAALKAKVEEALA 712
Query: 603 V 603
V
Sbjct: 713 V 713
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 239/601 (39%), Positives = 337/601 (56%), Gaps = 50/601 (8%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T ASLYVG+L+P V + LF+ FS ++S+RVC+D+ T +S Y YVNF D +A
Sbjct: 48 TSASLYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKA 107
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
I+ N++ + G+ RI WS RDP R++G N+F+KNL +IDN L + F FG I+SC
Sbjct: 108 IDDLNYSLIDGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGKILSC 167
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPA 187
KVAT E G SK GFV +ET E+A AAIEN+NG + D+ +YVG+ + K DR
Sbjct: 168 KVATDEQGNSKCFGFVHYETAEAARAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMK 227
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A +TN+++KN+D +EE + F +GKI SL + +D G S+GFGFVNF++ + A +A
Sbjct: 228 ANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKA 287
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
+E +N I + LY RAQKK ER + L+ Q+E R E++ KY+G N++VKN+DD +
Sbjct: 288 VEELNDKDINGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQGVNLFVKNLDDSIDS 347
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
+L+ F GTITSA+VM DE G +KGFGFVCFSSPEEA+KA+ + M H KPLYVA
Sbjct: 348 VKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVA 407
Query: 368 IAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTTPPGIVSQVPPRPGLM 424
+AQRK+ R++ L Q+Q M ++ IP + P ++Y PG PP
Sbjct: 408 LAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQPGF---FPPN---- 460
Query: 425 YQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQ 484
R + P P V + P + R NG +P G +
Sbjct: 461 ---------GRGSAPFPGPNPQMMVPRGQIPPPQGQWPRAGPNGQPVPVYGIPPVYGDFA 511
Query: 485 SAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPS 544
+A + QQ+G Y PN R N+ R L +LA+
Sbjct: 512 AA----NGGRQQRG----YYPN---RGQNQ--------------KGRPQKDLAALLASAP 546
Query: 545 PEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA 600
+QQK+ILGE LYP + +P+ KITGM+L++DN E+L LLE E+A
Sbjct: 547 VDQQKRILGEELYPKIVSMGRAQEPEAAGKITGMMLDLDNQEILALLEDDALFNNHFEDA 606
Query: 601 V 601
+
Sbjct: 607 L 607
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/389 (50%), Positives = 275/389 (70%), Gaps = 4/389 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD+T+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 131
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R + + A +
Sbjct: 132 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKE 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E F K+GK S+ + D G SRGFGFV+++ +DA +A+E
Sbjct: 191 FTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVE 250
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG+ + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 251 EMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 310
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM +E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 311 LRKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 369
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI 398
QRKE+R+AHL QY Q +AG+ AN I
Sbjct: 370 QRKEERKAHLTNQYMQRIAGMRAMPANAI 398
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LES ESL KVE
Sbjct: 548 MLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHESLRSKVE 607
Query: 599 EAVQVLKLSEAK 610
EAV VL+ +AK
Sbjct: 608 EAVAVLQAHQAK 619
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ D+T+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 9 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 66
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 67 ERALDTMNFDVVKGKPIRIMWSQR 90
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/402 (49%), Positives = 280/402 (69%), Gaps = 5/402 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD+T+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F K+GK S+ + D G SRGFGF++++ +DA +A+E
Sbjct: 190 FTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG+ + K ++ RAQKK ER+ L+ +FE ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 DMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM +E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLYYTTP 410
QRKE+R+AHL QY Q +AG+ AN I + + P+ Y P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRAMPANTIINQFQPTSGYFMP 410
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LES ESL KVE
Sbjct: 537 MLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVE 596
Query: 599 EAVQVLKLSEAKV-STQEA 616
EAV VL+ +AK +TQ+A
Sbjct: 597 EAVAVLQAHQAKKDATQKA 615
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ D+T+ L FS G + S +V RD I + G+ +V FS P +A
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFSQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVVKGKPIRIMWSQR 89
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/402 (50%), Positives = 280/402 (69%), Gaps = 5/402 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD+T+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F K+GK S+ + D G SRGFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG+ + K ++ RAQKK ER+ L+ +FE ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 DMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM +E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY-PSLYYTTP 410
QRKE+R+AHL QY Q +AG+ AN I + + P+ Y P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRAMPANTIINQFQPTSGYFMP 410
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LES ESL KVE
Sbjct: 563 MLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVE 622
Query: 599 EAVQVLKLSEAKV-STQEA 616
EAV VL+ +AK +TQ+A
Sbjct: 623 EAVAVLQAHQAKKDATQKA 641
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ D+T+ L FS G + S +V RD I + G+ +V FS P +A
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFSQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVVKGKPIRIMWSQR 89
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/389 (51%), Positives = 276/389 (70%), Gaps = 4/389 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+AN AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E+L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI 398
QRKE+R+AHL QY Q +AG+ AN I
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAI 397
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 263/622 (42%), Positives = 372/622 (59%), Gaps = 48/622 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLHPDVT+ L++ FS ++ S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSG+ N+F+KNL SIDN L + F FG+I+S KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+E G S+G GFV FET E+A AI +NG + D++++VG F + R L + A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL ++V E+ L + FS+FG + S+ + RD NG SRGFGFVNF+ ++A++A++
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+AER+ L+ +FE+ ++ER +Y+G N+YVKN+DD + DE
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS G ITSAKVM E +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LKEVFSTYGVITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQH-----MAGIEGSSANVIP----SGYPSLYYTTPPGIVSQVPPR 420
QRKE+R+A L QY + ++ + ++ ++P S ++YY++ G ++ + P
Sbjct: 369 QRKEERKAILTNQYRRRPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSS--GSITPMQPD 426
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRP--AFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHY 478
P QP G P T P A V PL RG
Sbjct: 427 PRWTAQPHG----------PPSTCPPAASVVQPLSTTQHPCIHLRGAS------------ 464
Query: 479 MQQSSQSAASSK----DSSNQQKGGQSKYVPNGRIRELNKGSGV---SLGTFNSGGVMAR 531
Q SSQ + + + GG+ +P G++ ++G+ + G S +
Sbjct: 465 -QVSSQVPHTQRVVNIGTQTTGPGGEGSSIP-GQLLVPHRGTSAVHSAHGVQESAVYVPG 522
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
+ MLAA +QKQ++GERLY L+ L KITGMLLE+DN ELLLLLESPE
Sbjct: 523 HQPLTVSMLAAAPLHEQKQMIGERLYSLIHDACAPLTGKITGMLLELDNLELLLLLESPE 582
Query: 592 SLAVKVEEAVQVLKLSEAKVST 613
SL K+EEAV VL++ ST
Sbjct: 583 SLHAKIEEAVAVLQVHREMEST 604
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 160/296 (54%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFET 149
D +++L+V +L + L EMF GNI+S +V +S G+ ++ F+
Sbjct: 2 DTGGHGCSLSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + I I S R + N+F+KNL++ + + L +
Sbjct: 62 PADAERALDTMNFEVIKGQPIR----IMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + +E+G SRGFGFV+F+ + A++A+ MNG ++ + ++ + +
Sbjct: 118 TFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
+RE L R L + +N+YVKN+ +V ++ L+ FSQ G + S KVMRD
Sbjct: 177 QKREAEL--------GARALGF--TNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGFV F EEA KAV+ +G + + LYV AQ++ +RQ+ L+ ++ Q
Sbjct: 227 NGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQ 282
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 262/680 (38%), Positives = 349/680 (51%), Gaps = 104/680 (15%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P A P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 106 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 165
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 166 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 225
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
A +TN+++KNLDS++ ++ + F KFG+I S ++RD+ G SRGFGFVNF
Sbjct: 226 KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTH 285
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+ A+ A+E MN I S+ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+
Sbjct: 286 ESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 345
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRD--------------------------------- 328
DD+ DE+L+ F GTITSAKVMRD
Sbjct: 346 TDDIDDEKLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKA 405
Query: 329 ------------------EKGINKGFG------FVCFSSPEEASKAVNTFHGYMLHRKPL 364
+K K FG FVCFSSP+EASKAV + M++ KPL
Sbjct: 406 EKAEEKPSESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPL 465
Query: 365 YVAIAQRKEDRQAHLQLQ---------------------YAQHMAGIEGSSANVIPSGYP 403
YVA+AQRK+ R++ L+ Y Q IP G
Sbjct: 466 YVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQR 525
Query: 404 SLYYTTPPGIVSQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAF-QVSPLPVN------ 455
+ + PG+V +P RPG P + G R G P F Q P+ +
Sbjct: 526 GMAFPPQPGMVMGIPGGRPGQYPGPFPGQQGGRGMGPNQQIPPNFAQGIPMGMQGPGGIP 585
Query: 456 -----PKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIR 510
P+ + GR G G Q + + GQ + GR +
Sbjct: 586 NGMGYPQMAQVQFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQGGRGQ 645
Query: 511 ELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
+G G +GGV A+ L A P QQKQ+LGE LYP ++ +P+L K
Sbjct: 646 NAAAPAGPQEGA--AGGVNAQ-------TLGAAPPAQQKQMLGEALYPKIQAQQPELAGK 696
Query: 571 ITGMLLEMDNSELLLLLESP 590
ITGMLLEMDN+ELL L P
Sbjct: 697 ITGMLLEMDNTELLSLTRKP 716
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 271/715 (37%), Positives = 365/715 (51%), Gaps = 129/715 (18%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P+ T P ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 47 PSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 107 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 166
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 167 GNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 226
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KNLD++V+ E E F K+G+I S I+RD E G SRGFGFVNF
Sbjct: 227 KFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVK 286
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+ A A+E +N + LY RAQKK ERE+ LR Q E R E+ KY+G N+YVKN
Sbjct: 287 HESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKN 346
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD---------EK--------------------- 330
+ DD+ DE+L+ F G ITSA+VMRD EK
Sbjct: 347 LTDDIDDEKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEE 406
Query: 331 ----------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
G +KGFGFVCFS+P+EASKAV + M++ KPLYVA+
Sbjct: 407 DSADKSDKVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVAL 466
Query: 369 AQRKEDRQAHLQLQY-------AQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP-- 419
AQRK+ R++ L+ Q +A G S P P++YY PPG +P
Sbjct: 467 AQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQ---PFMQPAVYY--PPGQQGFIPANA 521
Query: 420 ----------RPGLMYQPL-GLRTGWRANGF--------------VPPTRPAFQVSPLPV 454
+PG++ + G R G A GF +PP LP+
Sbjct: 522 AQRGGMAFGQQPGMVIPGMPGGRPGQFAAGFPGQQGGRGINPNQQLPPNAFGLGAQGLPI 581
Query: 455 NPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQ-------------KGG-- 499
G NG PQ A + Q GG
Sbjct: 582 GALQGP--GGLPNGLSYPQAIAQVQASFGRGGGGRGQVPGIQGMPPNLANVPGMRAGGQG 639
Query: 500 --QSKYVP---NGRIRELNKGSGVSLGTFNSGGVMARKPDMLNG------MLAAPSPEQQ 548
Q + +P G +R G G G M + + + G L+A P QQ
Sbjct: 640 FAQGRGIPPQQGGMVRSGQAGRGTGPGQ-----AMPPRDESVGGPTLNLQALSAAPPAQQ 694
Query: 549 KQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
KQ+LGE +YP ++ +P+L KITGMLLEMDN+ELL L++ +L KV+EA+ V
Sbjct: 695 KQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLSLVDDDAALRAKVDEAINV 749
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 243/607 (40%), Positives = 347/607 (57%), Gaps = 56/607 (9%)
Query: 7 TATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
T TP +SLYVGDL P+V++ LF+ F++ ++++RVC+D+ T RS Y YVN+ +
Sbjct: 3 TNFTPISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGA 62
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
DA RA++ N+T + GK RI WS RDP RKSGV N+F+KNL + ID+ L + F FG
Sbjct: 63 DAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG 122
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP 184
NI+SCKV T + SKG GFV +ET+ESA+ AI +NG + ++++VG F +R P
Sbjct: 123 NILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQP 182
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+ K+TN+F KNL DV + L E ++G+I ++ I D+ G S+GFGF NF++ + A
Sbjct: 183 T-EVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAA 241
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+ +E NG + K +YA RAQKK ERE L+H FE KY+G N+Y+KNIDD
Sbjct: 242 KNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDS 294
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKG-INKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ +++L+ FSQ GTITSA VM+D+K +KGFGFVC+++P+EA++AV +G M+ KP
Sbjct: 295 IDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKP 354
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHM-AGIEGSSANVIPSGYPSLYYTTP--PGIV-SQVPP 419
LYVA+AQRK+ R+A L++Q+ Q GI SG P + P P +V Q+ P
Sbjct: 355 LYVALAQRKDIRRAQLEMQHQQKFKTGIRQQMPPTYGSG-PVFFTPAPVNPQVVYQQMMP 413
Query: 420 RP-GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHY 478
RP QP+G+ G AN +P RQN R NG Q G
Sbjct: 414 RPRNWNGQPVGVPQGQYANMNYARGQP--------------RQNGPRQNGGQPRQNGPR- 458
Query: 479 MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNG 538
D S Q +P + + + + + A L
Sbjct: 459 -----------PDVSGAQP------IP------VQQQTTLDVAQTQQAASSAESALNLQS 495
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE-MDNSELLLLLESPESLAVKV 597
++ PS +QQ LGE LYPL+ +PDL KITGMLL+ + EL L + + LA K+
Sbjct: 496 IINLPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKI 555
Query: 598 EEAVQVL 604
EA++VL
Sbjct: 556 REALEVL 562
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 258/654 (39%), Positives = 348/654 (53%), Gaps = 113/654 (17%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD+T+ L+D F + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP R+SG N+F+KNL SIDN L + F +FGNI+SCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+G SKG GFV +E++ESA AIE +NG + DK+++V RF ++DR+ A
Sbjct: 122 VCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKH 180
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRAL 248
+TNLF+KNL + L++ F +FG++ S + DE G S+ GF++F D A A+
Sbjct: 181 FTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAV 240
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
E M+ I K LY RAQKKAER L+ ++E+ ++ERI +Y+G N+YVKN+DD + DE
Sbjct: 241 EIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDE 300
Query: 309 ELKAHFSQCGTITSAKVMRD---------------------------------------- 328
L+ F Q G ITSAKV+ D
Sbjct: 301 GLREAFKQFGNITSAKVITDLNEKDEVGQAKSDQAPEEEGEAVEEKKTEDSEAAGDAPGP 360
Query: 329 -----EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+KG +KGFGFVCFSSPEEA+KAV +G + KPLYV +AQRKEDR+AHLQ QY
Sbjct: 361 EKPVSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQY 420
Query: 384 AQHMA-GIEGSSANVIPSGYPSLYYTTPPGIVSQ--VPPR---PGLMYQPLGLRTGWRAN 437
Q ++ GI + +V+Q PPR P + QP+ +
Sbjct: 421 MQRVSTGIR-------------MQAFMGNQVVNQNFQPPRYILPTMQGQPVQM------- 460
Query: 438 GFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQK 497
P P + +P P R Y S Q AS
Sbjct: 461 --FPQGTPMVRATPRWAPPNQVRH--------------IVYQSHSQQILAS--------- 495
Query: 498 GGQSKYVPNGRIRELNKGSGV-----SLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQIL 552
P+ R+R + S V + N + + MLA +P++QKQ+L
Sbjct: 496 -------PDARVRNVQIPSEVIQMPPQMPHQNQPAGDQAPETLTSSMLANANPQEQKQML 548
Query: 553 GERLYPLVEKHKP-DLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
GERL+PL++ DL KITGMLLE+DNSELL +L++ E L KV+EAV VLK
Sbjct: 549 GERLFPLIQSMAATDLAGKITGMLLEIDNSELLHMLDNRELLKSKVDEAVLVLK 602
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 149/287 (51%), Gaps = 17/287 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L I L + FQ G ++S +V +S G+ +V F+ A A+
Sbjct: 1 MASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I I S R + N+F+KNLD + + L + FS FG I
Sbjct: 61 DTMNFDVIKGKPIR----IMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + D NG S+GFGFV++++ + A+RA+E +NG ++ K ++ AR + + +R
Sbjct: 117 LSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDR----M 171
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGF 336
+F + K +N++VKN+ D + L +F Q G + S KV+ DE G++K
Sbjct: 172 REFGDAAKH------FTNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCH 225
Query: 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
GF+ F ++A AV H + K LY AQ+K +R + L+ +Y
Sbjct: 226 GFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKY 272
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/399 (49%), Positives = 279/399 (69%), Gaps = 3/399 (0%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
+A ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+ D
Sbjct: 2 SAAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADG 61
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
RA+E N++ + G+ RI WS RDP RK+G N+F+KNL E IDN L + F FGN+
Sbjct: 62 ERALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNV 121
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LP 184
+SCKVAT E G+SKG+GFV +ET E+A AI+ +NG + DK++YVG I + +R +
Sbjct: 122 LSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKIE 181
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
++TN+++KN+D +VT+E V+ F FG+I S ++ D+ G SRGFGFVNFD ++A
Sbjct: 182 EMKNQFTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEA 241
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
A+EA++ S + + L+ ARAQKKAERE+ LR +E+ + E++ KY+G N+Y+KN++DD
Sbjct: 242 HAAVEALHDSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDD 301
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ DE L+ F G ITSAKVMRDEKGI+KGFGFVCFSSP+EA+KAV + M+ KPL
Sbjct: 302 IDDERLRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPL 361
Query: 365 YVAIAQRKEDRQAHLQLQYAQ-HMAGIEGSSANVIPSGY 402
YV++AQR+E R+ L+ Q AQ + ++ ++A IP GY
Sbjct: 362 YVSLAQRREVRRQQLESQIAQRNQIRMQQAAATGIPGGY 400
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 264/622 (42%), Positives = 376/622 (60%), Gaps = 48/622 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLHPDVT+ L++ FS ++ S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSG+ N+F+KNL SIDN L + F FG+I+S KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+E G S+G GFV FET E+A AI +NG + D++++VG F + R L + A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL ++V E+ L + FS+FG + S+ + RD NG SRGFGFVNF+ ++A++A++
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+AER+ L+ +FE+ ++ER +Y+G N+YVKN+DD + DE
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS G ITSAKVM E +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LKEVFSTYGVITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQH-----MAGIEGSSANVIP----SGYPSLYYTTPPGIVSQVPPR 420
QRKE+R+A L QY + ++ + ++ ++P S ++YY++ G ++ + P
Sbjct: 369 QRKEERKAILTNQYRRRPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSS--GSITPMQPD 426
Query: 421 PGLMYQPLGLRTGWRANGFVPPTR--PAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHY 478
P QP G PP+ PA V V P Q+ + GA
Sbjct: 427 PRWTAQPHG-----------PPSTCPPAASV----VQPLSTTQH------PCIHLSGAS- 464
Query: 479 MQQSSQSAASSK----DSSNQQKGGQSKYVPNGRIRELNKGSGV---SLGTFNSGGVMAR 531
Q SSQ + + + GG+ +P G++ ++G+ + G S +
Sbjct: 465 -QVSSQVPHTQRVVNIGTQTTGPGGEGSSIP-GQLLVPHRGTSAVHSAHGVQESAVYVPG 522
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
+ MLAA +QKQ++GERLY L+ L KITGMLLE+DN ELLLLLESPE
Sbjct: 523 HQPLTVSMLAAAPLHEQKQMIGERLYSLIHDACAPLTGKITGMLLELDNLELLLLLESPE 582
Query: 592 SLAVKVEEAVQVLKLSEAKVST 613
SL K+EEAV VL++ ST
Sbjct: 583 SLHAKIEEAVAVLQVHREMEST 604
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 160/296 (54%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFET 149
D +++L+V +L + L EMF GNI+S +V +S G+ ++ F+
Sbjct: 2 DTGGHGCSLSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + I I S R + N+F+KNL++ + + L +
Sbjct: 62 PADAERALDTMNFEVIKGQPIR----IMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + +E+G SRGFGFV+F+ + A++A+ MNG ++ + ++ + +
Sbjct: 118 TFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
+RE L R L + +N+YVKN+ +V ++ L+ FSQ G + S KVMRD
Sbjct: 177 QKREAEL--------GARALGF--TNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGFV F EEA KAV+ +G + + LYV AQ++ +RQ+ L+ ++ Q
Sbjct: 227 NGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQ 282
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 241/611 (39%), Positives = 340/611 (55%), Gaps = 49/611 (8%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
PP A+ ASLYVGDL P+VT+ +LF+ FS +AS+RVC+D+ T RS Y YVNF +
Sbjct: 19 PPLAS--ASLYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVV 76
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
DA RA++ N+TQ+ GK RI W RDP RKSG N+F+KNL +++D L + F FG
Sbjct: 77 DAERALDTLNYTQIKGKACRIMWKHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTFSQFG 136
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP 184
NI+SCKV+ E S+G GFVQFET E AN AI +NG + DKR++VG FI + +R
Sbjct: 137 NILSCKVSMDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFVGPFIPRGEREST 196
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+ ++TN+++KN +V+++ + F ++G+I S I R E+GTS+ FGFVNF DDA
Sbjct: 197 NGERRFTNVYVKNFPDNVSDDDFRKSFERYGEITSCKIMRKEDGTSKCFGFVNFKEADDA 256
Query: 245 RRALEAMNGS--VIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
++ E MNG G + +YA RA+K++ER++ L+ ++++ R ER+ + N+Y+KN+D
Sbjct: 257 KKCCEEMNGQKPFGGERDIYAGRAEKESERKEKLKKKYDQIRMERLKNNQLVNLYIKNLD 316
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEK--GINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
D + DE+L+ F Q GTITSAKVMRD+ ++KGFGFVCF+ PEEA++AV +G M+
Sbjct: 317 DTIDDEKLRQTFEQFGTITSAKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTAMNGQMVG 376
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIP---------SGYPSLYYTTPP 411
KP+YVA+ Q E R+ Q+Q AQ G N++P T PP
Sbjct: 377 TKPIYVALHQPIEIRR---QMQAAQ------GQRQNLLPRFQMQGMPMPQMMPFTRTAPP 427
Query: 412 GI--VSQVPPR-PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNG 468
G V P + PG QP R G PV + RQ N
Sbjct: 428 GAQGVFMFPGQMPGQYRQPFNNRQGQ-----------------YPVQGQQRRQGGANYNA 470
Query: 469 NMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGV 528
G + Q +++ Q KG P
Sbjct: 471 QQQQARGQQQQARGQQQQTNAR----QPKGAVPAQQPQRVPAAPQAVPAQQAAPAPQVPP 526
Query: 529 MARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE-MDNSELLLLL 587
A + L +L P Q KQILGERLY L++ + L KITGMLLE +DNSEL+ L+
Sbjct: 527 SAMSKEQLMALLVNAPPAQAKQILGERLYALIQAEQGPLAGKITGMLLEGLDNSELIALI 586
Query: 588 ESPESLAVKVE 598
+ E+L K++
Sbjct: 587 DDAEALRSKIQ 597
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/423 (50%), Positives = 279/423 (65%), Gaps = 14/423 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEESAN +IE +NG + K+++VGRFI K+ ++ L A
Sbjct: 122 AQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGRFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++T+E L E F K+G I S + EN SRGFGFV F+NP+ A A++
Sbjct: 182 FTNVYVKNFGDELTDESLKEMFEKYGTITSHRVMIKEN-KSRGFGFVAFENPESAEVAVQ 240
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG +G KVLY RAQKK ER+ L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 241 ELNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDE 300
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM +E G +KGFGFVCFS+ EEA+KAV +G ++ KPLYVA+
Sbjct: 301 RLRKEFSPFGTITSAKVMLEE-GRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVAL 359
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVI--PSGYPSLYYTTPP-------GIVSQVPP 419
AQRKEDR+AHL QY Q MA + I P G Y T P VSQ+
Sbjct: 360 AQRKEDRKAHLASQYMQRMANMRMQHMGQIFQPGGNGGYYVPTIPQPQRFFGKQVSQIRT 419
Query: 420 RPG 422
PG
Sbjct: 420 TPG 422
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 54/76 (71%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P +QKQ+LGERL+PL+E P + KITGMLLE+DNSEL+ +LE ESL KV+
Sbjct: 553 MLAAAQPAEQKQMLGERLFPLIEPMYPSIAGKITGMLLEIDNSELVHMLEHSESLKAKVD 612
Query: 599 EAVQVLKLSEAKVSTQ 614
EAV VL + K Q
Sbjct: 613 EAVAVLHAHQQKTQPQ 628
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/409 (50%), Positives = 280/409 (68%), Gaps = 11/409 (2%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG------SSANVIPSGYPS 404
KPLYVA+AQRKE+RQAHL QY Q MA + +S ++ YP+
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPASTSFRLLHGSYPT 409
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/429 (48%), Positives = 292/429 (68%), Gaps = 23/429 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 122 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +++L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 181 FTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 240
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 241 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 300
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 301 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 359
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-------GY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I S GY P++ YYT P
Sbjct: 360 QRKEERKAHLTNQYMQRVAGMRALPANAILSQFQPAAGGYFVPAVPQAQGRPPYYT--PN 417
Query: 413 IVSQVPPRP 421
++Q+ P P
Sbjct: 418 QLAQMRPNP 426
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 263/668 (39%), Positives = 364/668 (54%), Gaps = 95/668 (14%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E
Sbjct: 51 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 110
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 111 ELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFAAFGNILSCKV 170
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E+G SKG+GFV +ET E+A AI+++NG + +K++YVG I K +R A
Sbjct: 171 AQDENGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYVGHHIPKKERQSKFDEMKAN 230
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRAL 248
+TN+++KN+D +V+++ F FG+I S +ARD ++GTSRGFGFVNF + + A A+
Sbjct: 231 FTNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAV 290
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+A++ + + + L+ RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+DD++ DE
Sbjct: 291 DALHETELKGQALFVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYVKNLDDEIDDE 350
Query: 309 ELKAHFSQCGTITSAKVMRD-------------------------EKGINKGFGFVCFSS 343
L+ FS GTITSAKVMRD ++G +KGFGFVCFS+
Sbjct: 351 RLRQEFSPYGTITSAKVMRDSLDSPKEKDGEESKVGEPEEKATDKKQGKSKGFGFVCFSN 410
Query: 344 PEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYP 403
P+EASKAV + M++ KPLYVA+AQRK+ R++ L+ Q I A P
Sbjct: 411 PDEASKAVAEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQQRNQ-IRMQQAAAAAGMPP 469
Query: 404 SLYYTTP----PGIVSQVPP--------------------RPGLMYQPLGLRTGWRANGF 439
Y + P PG PP + G+M G RA+G
Sbjct: 470 QPYLSAPLYYQPGAPGVQPPFLAGPGGPGVPPNRLPFPPQQAGMMISGAG-----RASGN 524
Query: 440 VPPT-------RPAFQVSPLPVNPKH---------------NRQNRGRMN--GNMLPQVG 475
PP+ R Q P P+ N+ MN PQ+G
Sbjct: 525 WPPSANPSGGNRNGTQGQPAPIYGMTGQGGPGGQFGYAQAFNQAQLAAMNPAARGAPQLG 584
Query: 476 AHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM 535
+ + S NQQ G Q + P GR ++G G ++S P
Sbjct: 585 LNPGRGLSSGGV------NQQMGHQQR-GPLGRGVAPSQGRG-----YHSDQASQGAPPQ 632
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L + P P+QQKQ+LGE LYP + P L KITGMLLEMDN+ELL L++ +L
Sbjct: 633 LANLNNLP-PQQQKQVLGEALYPRIHAINPQLAGKITGMLLEMDNNELLNLIKDDSALRN 691
Query: 596 KVEEAVQV 603
KV+EA+ V
Sbjct: 692 KVDEALSV 699
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 270/693 (38%), Positives = 361/693 (52%), Gaps = 104/693 (15%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P A P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 106 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 165
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 166 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 225
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
A +TN+++KNLDS++ ++ + F KFG+I S ++RD+ G SRGFGFVNF
Sbjct: 226 KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTH 285
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+ A+ A+E MN I S+ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+
Sbjct: 286 ESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 345
Query: 302 DDDVTDEELKAHFSQCGTITSAK------VMRDEK------------------------- 330
DD+ DE+L+ F GTITSAK V RD+
Sbjct: 346 TDDIDDEKLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKA 405
Query: 331 --------------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
G +KGFGFVCFSSP+EASKAV + M++ KPL
Sbjct: 406 EKAEEKPSESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPL 465
Query: 365 YVAIAQRKEDRQAHLQLQ---------------------YAQHMAGIEGSSANVIPSGYP 403
YVA+AQRK+ R++ L+ Y Q IP G
Sbjct: 466 YVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQR 525
Query: 404 SLYYTTPPGIVSQVPP-RPGLMYQPLGLRTGWRANGFVPPTRPAF-QVSPLPVN------ 455
+ + PG+V +P RPG P + G R G P F Q P+ +
Sbjct: 526 GMAFPPQPGMVMGIPGGRPGQYPGPFPGQQGGRGMGPNQQIPPNFAQGIPMGMQGPGGIP 585
Query: 456 -----PKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIR 510
P+ + GR G G Q + + GQ + GR +
Sbjct: 586 NGMGYPQMAQVQFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQGGRGQ 645
Query: 511 ELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
+G G +GGV A+ L A P QQKQ+LGE LYP ++ +P+L K
Sbjct: 646 NAAAPAGPQEGA--AGGVNAQ-------TLGAAPPAQQKQMLGEALYPKIQAQQPELAGK 696
Query: 571 ITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
ITGMLLEMDN+ELL LLE E+L KV+EA+ V
Sbjct: 697 ITGMLLEMDNTELLSLLEDEEALRAKVDEALSV 729
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/392 (50%), Positives = 269/392 (68%), Gaps = 4/392 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ LF+ FS + S+RVC+D+ T RS Y YVNF P DA RA++
Sbjct: 19 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 78
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++GK +RI WS RDP R+SG N+F+KNL +SIDN + + F FGNI+SCKV
Sbjct: 79 TMNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 138
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E+ SKG+GFV FETEESA AIE +NG + K++YVG+F ++ R+ + A +
Sbjct: 139 ANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAARMREMGETARR 198
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+F+KN ++ +E L + F+KFGKI S + D +G S+GFGFV F+NP+DA +A+
Sbjct: 199 FTNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVN 258
Query: 250 AMNGSVI--GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
M+ + + LY RAQKK ER L+ ++E+++ ER+ +Y+G N+YVKN+DD V D
Sbjct: 259 EMHEYQLPDSERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVDD 318
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E L+ +F G ITSAKVM D+ G +KGFGFVCF P+EA+KAV +G M+ KPLYVA
Sbjct: 319 EVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 378
Query: 368 IAQRKEDRQAHLQLQYAQHMAGIEGSSANVIP 399
+AQRKEDR+A L QY Q +A I +A +P
Sbjct: 379 LAQRKEDRKAQLASQYMQRLASIRMHNAGAMP 410
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 3/82 (3%)
Query: 525 SGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEK--HKPDLVAKITGMLLEMDNSE 582
SG V+ + + MLA P++QKQ+LGER+YPL+E+ PD V KITGM+LEMDNSE
Sbjct: 573 SGIVVQGQEPLTAHMLAQALPQEQKQMLGERIYPLIERIYQGPD-VGKITGMMLEMDNSE 631
Query: 583 LLLLLESPESLAVKVEEAVQVL 604
LL++LE+ E L KV EA VL
Sbjct: 632 LLMMLENEELLQSKVSEAASVL 653
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 265/681 (38%), Positives = 360/681 (52%), Gaps = 100/681 (14%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E
Sbjct: 51 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 110
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 111 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 170
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR A
Sbjct: 171 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKAN 230
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+D DVTEE + F +FG+I S ++RD G SRGFGFVN+ + A+ A++
Sbjct: 231 FTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVD 290
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
M+ + ++ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+ DDV DE+
Sbjct: 291 EMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 350
Query: 310 LKAHFSQCGTITSAKVMR------------------------------------------ 327
L+ F GTITSAKVMR
Sbjct: 351 LRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESDE 410
Query: 328 ---------DEKGINKGFGF--VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQ 376
D+K + K GF VCFSSP+EASKAV + M++ KPLYVA+AQRK+ R+
Sbjct: 411 EKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 470
Query: 377 AHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY------------------TTPPGIV 414
+ L+ +Q + + ++A +P Y P+++Y PG+V
Sbjct: 471 SQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGMV 530
Query: 415 SQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ 473
+P RPG P + G R G P FQ P+ G M G
Sbjct: 531 MGIPGGRPGQYPGPFPGQQGGRGMGPNQQMPPNFQGIPM-----------GAMQGPGGIP 579
Query: 474 VGAHYMQQSSQSAASSKDSSNQQKG---GQSKYVPNGRIRELNKGSGVSLGTFNSGGV-- 528
G Y Q Q Q G GQ P + R +G G
Sbjct: 580 NGMGYPQAMGQVQFGRGGGRGQVPGMPMGQGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQ 639
Query: 529 -MARKPDMLNGMLA-----APSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSE 582
A + + G L A +P QQKQ+LGE LYP ++ +P+L KITGMLLEMDN+E
Sbjct: 640 PAAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTE 699
Query: 583 LLLLLESPESLAVKVEEAVQV 603
LL LLE ++L KV+EA+ V
Sbjct: 700 LLGLLEDDDALRAKVDEALSV 720
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/408 (51%), Positives = 276/408 (67%), Gaps = 9/408 (2%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL V D +LFD FS+ S+ SVRVC+D T S Y YVNF SP DA RA+E+
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEM 99
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++GK +RI +S RDP +RKSG AN+F+KNL +SIDN L + F FGNI+SCKVA
Sbjct: 100 LNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVA 159
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQFE EE+A AI LNG + DK++YVG F++K +R S K+ N
Sbjct: 160 TEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNN 219
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL TE++L E F KFG I S+++ R+ +G SR FGFVNF+NPDDA RA+E +N
Sbjct: 220 VYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLN 279
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE-LK 311
G K Y RAQKK+ERE L+ +FE+ KE K +G+N+Y+KN+DD + D+E LK
Sbjct: 280 GKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLK 339
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F+ GTITS KVMRD G++KG GFV F S E+AS+A+ +G M+ KPLYVA+AQR
Sbjct: 340 EIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQR 399
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSAN----VIPSGYPS----LYYTTPP 411
KE+R+A LQ Q++Q + S + P G P L+Y PP
Sbjct: 400 KEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPP 447
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 23/190 (12%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG-TSRGFGFVNFDNPDDARRALE 249
T+L++ +LD V + L + FS+ G + S+ + RD N S G+ +VNF +P DA RALE
Sbjct: 39 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALE 98
Query: 250 AMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + I K ++Y+ R K +N+++KN+D +
Sbjct: 99 MLNFTPINGKPIRIMYSNRDPSSR-------------------KSGAANIFIKNLDKSID 139
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
++ L FS G I S KV + G +KG+GFV F E A A++ +G +L+ K +YV
Sbjct: 140 NKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYV 199
Query: 367 AIAQRKEDRQ 376
RK++R+
Sbjct: 200 GPFVRKQERE 209
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASK 349
++ +++YV ++D V D +L FSQ G++ S +V RD ++ G+ +V FSSP +A++
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A+ + ++ KP+ + + R
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNR 117
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/423 (49%), Positives = 279/423 (65%), Gaps = 14/423 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEESAN +IE +NG + K++YVGRFI K+ ++ L A
Sbjct: 122 AQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L E F K+G I S + ++G SRGFGFV F+NP+ A A++
Sbjct: 182 FTNVYVKNFGDELNDETLKEMFEKYGTITSHRVM-IKDGKSRGFGFVAFENPESAEHAVQ 240
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG +G K+LY RAQKK ER+ L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 241 ELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDE 300
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM +E G +KGFGFVCFS+ EEA+KAV +G ++ KPLYVA+
Sbjct: 301 RLRKEFSPFGTITSAKVMLEE-GRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVAL 359
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVI--PSGYPSLYYTTPP-------GIVSQVPP 419
AQRKEDR+AHL QY Q MA + I P G Y T P VSQ+
Sbjct: 360 AQRKEDRKAHLASQYMQRMANMRMQHMGQIFQPGGNGGYYVPTLPQPQRFFSKQVSQIRT 419
Query: 420 RPG 422
PG
Sbjct: 420 TPG 422
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/446 (48%), Positives = 291/446 (65%), Gaps = 19/446 (4%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
P SLYVGDL +VTD +L+D F++ + SVRVC+D +T RS YGYVN+ +P DA RA
Sbjct: 29 VPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARA 88
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
++V N T L+ K LRI +S RDP RKSG+AN+F+KNL ++ID+ L + F +FGNI+SC
Sbjct: 89 LDVLNFTPLNNKPLRIMYSHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFGNILSC 148
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
KVAT G+SKG+GFVQF++EE+A AI+ LNG + DK++YVG F++K +R K
Sbjct: 149 KVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQVYVGNFLRKQERDSALSNIK 208
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+ N+++KNL T+E L F + G I S ++ RD +G S+ FGFVNF+N DDA +A+E
Sbjct: 209 FNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKCFGFVNFENVDDAAKAVE 268
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
A+NG K Y +AQKK+ERE L+ +FE+ E + KY+ N+Y+KN+DD V DE+
Sbjct: 269 ALNGKKFDDKEWYVGKAQKKSERELELKGRFEQSL-ESVEKYQAVNLYIKNLDDSVNDEK 327
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS GTITS KVM D GI++G GFV FS+PEEAS+A+ +G M+ KPLYVA A
Sbjct: 328 LKELFSDFGTITSCKVMHDPSGISRGSGFVAFSTPEEASRALAELNGKMVVSKPLYVAPA 387
Query: 370 QRKEDRQAHLQLQYAQH----MAGIEGSSANVIPSGYPS-----LYYTTPPGIVSQVPPR 420
QRKE+R+A LQ Q++Q MA + P G P LY PP ++ P+
Sbjct: 388 QRKEERRARLQAQFSQMRPVAMAPSVAPRMQMYPPGAPGLGQQFLYGQGPPAMI----PQ 443
Query: 421 PGLMYQPL---GLRTGW--RANGFVP 441
G YQ G+R G N FVP
Sbjct: 444 AGFGYQQQLVPGMRPGGAPMPNFFVP 469
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEA 347
+++ +++YV ++D +VTD +L F+Q G + S +V RD + G+G+V +S+P++A
Sbjct: 26 IQFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDA 85
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
++A++ + L+ KPL + + R
Sbjct: 86 ARALDVLNFTPLNNKPLRIMYSHR 109
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 260/665 (39%), Positives = 357/665 (53%), Gaps = 92/665 (13%)
Query: 4 VPPTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
P T + P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+
Sbjct: 32 APATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 91
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
RA++ N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F
Sbjct: 92 DTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFA 151
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 152 AFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 211
Query: 182 V--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
A +TN+++KN+D +V +E + F KFG+I S ++RD G SRGFGFVNF
Sbjct: 212 QSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFS 271
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ A+ A+E MN + S+ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVK
Sbjct: 272 THESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVK 331
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRD---------------------EK-------- 330
N+ DDV D++L+ F GTITSAKVMRD EK
Sbjct: 332 NLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEP 391
Query: 331 ----------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+
Sbjct: 392 AAEEKEKEEEKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVAL 451
Query: 369 AQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY----------------- 407
AQRK+ R++ L+ +Q ++ + ++A + Y P+++Y
Sbjct: 452 AQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIPGAQRGGMF 511
Query: 408 TTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMN 467
PG++ +P RPG P + G R G P FQ P+ Q G N
Sbjct: 512 PPQPGMMMGMPGRPGQYPGPFPGQQGGRGVGPNQQIPPNFQGLPMGA-----MQGPGIPN 566
Query: 468 GNMLPQVGAHYMQQSSQSAA--SSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNS 525
G P V + + GG+ G++R G G ++G
Sbjct: 567 GMGYPMVQGQFGGGRGRGQVPGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGP 626
Query: 526 G---GVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSE 582
GV+ + L+A P+QQKQ+LGE LYP ++ +P+L KITGMLLEMDN+E
Sbjct: 627 ETPVGVLTAQ------ALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTE 680
Query: 583 LLLLL 587
LL LL
Sbjct: 681 LLGLL 685
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 250/633 (39%), Positives = 354/633 (55%), Gaps = 88/633 (13%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+GFV FET+E+A AI+ +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F K+G S+ + D++G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RA KK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 DMNGKDMNGKAIYVGRA-KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFS
Sbjct: 309 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFS--------------------------- 340
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIP-SGYPSLYYTT------------PPGIVSQ 416
Y Q MA + + + P PS Y+ PPG ++Q
Sbjct: 341 -------------YMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQITQ 387
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ---NRGRMNGNMLP 472
+ P P W A RP FQ P + P R + R +
Sbjct: 388 LRPSP-----------RWTAQS----ARPHPFQNMPGTIRPTAPRPPAFSTMRPASQVPR 432
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGG-------QSKYVPNGRIRE-LNKGSGVSLGTFN 524
V A + +S + ++ Q KY P R ++ LN V++
Sbjct: 433 VVSAQRVANTSTQTMGPRPTAAAAAATNSVRTVPQYKYAPGVRNQQHLNAQPQVAMQQ-P 491
Query: 525 SGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELL 584
+ V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL
Sbjct: 492 AVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELL 550
Query: 585 LLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
+LESPESL KV+EAV VL+ +AK + Q+++
Sbjct: 551 HMLESPESLRSKVDEAV-VLQAHQAKEAAQKSV 582
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 158/296 (53%), Gaps = 17/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM D+
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G ++ K +YV A +K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRA-KKVERQTELKRKFEQ 281
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 266/617 (43%), Positives = 369/617 (59%), Gaps = 46/617 (7%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
A +SLYVGDLHPDVT+ L++ FS ++ S+RVC+D T RS Y Y+NF P DA
Sbjct: 70 ACALSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAE 129
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
RA++ N + G+ +RI WS RDP RKSG+ N+F+KNL SIDN L + F FG+I+
Sbjct: 130 RALDTMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSIL 189
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPS 185
S KV +E G S+G GFV FET E+A AI +NG + D++++VG F + R L +
Sbjct: 190 SSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGA 248
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A +TN+++KNL D+ E+ L + FS+FGK+ S+ + RD NG SRGFGFVNF+ ++A+
Sbjct: 249 RALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQ 308
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A++ MNG + ++LY RAQK+AER+ L+ +FE+ ++ER +Y+G N+YVKN+DD +
Sbjct: 309 KAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDDSI 368
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE LK FS G ITSAKVM E +KGFGFVCFSSPEEA+KAV +G ++ KPLY
Sbjct: 369 NDERLKEVFSAYGVITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 427
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSS---------ANVIPSGYPSLYYTTPPGIVSQ 416
VA+AQRKE+R+A L QY + ++ SS + V S ++YY + G ++
Sbjct: 428 VALAQRKEERKAILTNQYRRQLSRPVLSSFQQPTNYLLSAVSQSTAQAVYYGS--GSMAP 485
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
+ P P QP G + PP A V PL G M P+V
Sbjct: 486 MQPDPRWAVQPHG------PSSTCPPA--ASVVQPL-----------GTMQH---PRVHL 523
Query: 477 HYMQQSSQSAASSKDSSN-----QQKGGQSKYVPNGRIRELNKGSGV---SLGTFNSGGV 528
+ Q+S ++ N GG+ +P G+ ++GS + G
Sbjct: 524 NNASQASSQVPHTQRVVNIGTQTTGSGGEGCSIP-GQPLLTHRGSSAVHSAHGVQEPAVY 582
Query: 529 MARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLE 588
+ + MLAA +QKQ++GERLY L++ L KITGMLLEMDN ELLLLLE
Sbjct: 583 VPGHQPLTVSMLAAAPLHEQKQMIGERLYSLIQDTCAPLTGKITGMLLEMDNLELLLLLE 642
Query: 589 SPESLAVKVEEAVQVLK 605
SPESL K+EEAV VL+
Sbjct: 643 SPESLHAKIEEAVAVLR 659
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 161/296 (54%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFET 149
DP + +++L+V +L + L EMF G I+S +V +S G+ ++ F+
Sbjct: 65 DPGGQACALSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 124
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + I I S R + N+F+KNL++ + + L +
Sbjct: 125 PADAERALDTMNFEMIKGQPIR----IMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYD 180
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + +E+G SRGFGFV+F+ + A++A+ MNG ++ + ++ + +
Sbjct: 181 TFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR 239
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
+RE L R L + +NVYVKN+ D+ ++ L+ FSQ G + S KVMRD
Sbjct: 240 QKREAEL--------GARALGF--TNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDS 289
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGFV F EEA KAV+ +G + + LYV AQ++ +RQ+ L+ ++ Q
Sbjct: 290 NGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQ 345
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/447 (47%), Positives = 295/447 (65%), Gaps = 30/447 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 28 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 87
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 88 TMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 147
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 148 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 206
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V + +L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E
Sbjct: 207 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 266
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 267 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 326
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 327 LRREFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 385
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ A+ I GY P++ YYT P
Sbjct: 386 QRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 443
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGF 439
++Q+ P P + G R GF
Sbjct: 444 QLAQMRPNP-------RWQQGGRPQGF 463
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 25 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 82
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 83 ERALDTMNFDVMKGKPIRIMWSQR 106
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 243/591 (41%), Positives = 338/591 (57%), Gaps = 71/591 (12%)
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N + GK +RI WS RDP RKSGV N+F+KNL ESIDN L + F FGNI+SCKV
Sbjct: 2 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 61
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYT 191
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A ++T
Sbjct: 62 DENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT 120
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KN +V + +L E FS+FGK S+ + RD +G S+GFGFV+++ +DA +A+E M
Sbjct: 121 NVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+L+
Sbjct: 181 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 240
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQR
Sbjct: 241 REFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 299
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPGIV 414
KE+R+AHL QY Q +AG+ A+ I GY P++ YYT P +
Sbjct: 300 KEERKAHLTNQYMQRVAGMRALPASAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PNQL 357
Query: 415 SQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNRGRMNGN 469
+Q+ P P + G R GF Q P P + P N +RG
Sbjct: 358 AQMRPNP-------RWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRG----- 405
Query: 470 MLPQVGAHYMQQSSQSAASSKDSSNQQKGG-----QSKYVPNGRIRELNKGSGVSLGTFN 524
LP + A + + G Q P R + G +
Sbjct: 406 -LPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDSCQCWRRPYSRAKPCTSGRSCCRRSQG 464
Query: 525 SGGVMAR-------------------------KPDMLNGMLAAPSPEQQKQILGERLYPL 559
G + R + + MLAA P++QKQ+LGERL+PL
Sbjct: 465 CGSIQVRLQLSAAALPAIQPLQAPQPAVQVQGQEPLTASMLAAAPPQEQKQMLGERLFPL 524
Query: 560 VEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
++ +L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 525 IQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 575
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 25/203 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + +V DG L + FS+F SV+V +DS +G+S +G+V++ DA +A+E
Sbjct: 121 NVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEE 179
Query: 73 KNHTQLHGKMLRISWSCRDPD-----------------ARKSGVANLFVKNLIESIDNVR 115
N ++ GK + + + + + +R GV NL++KNL ++ID+ +
Sbjct: 180 MNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 238
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L+ F FG+I S KV EDG+SKG GFV F + E A A+ +NG VG K +YV
Sbjct: 239 LRREFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 297
Query: 176 IKKSDRVLPSPAAKYTNLFMKNL 198
+K +R A TN +M+ +
Sbjct: 298 QRKEER-----KAHLTNQYMQRV 315
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/392 (50%), Positives = 269/392 (68%), Gaps = 4/392 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ LF+ FS + S+RVC+D+ T RS Y YVNF P DA RA++
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++GK +RI WS RDP R+SG N+F+KNL +SIDN + + F FGNI+SCKV
Sbjct: 78 TMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 137
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E+ SKG+GFV FETEESA AIE +NG + K++YVG+F ++ R+ + A +
Sbjct: 138 ANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARR 197
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L + FSKFGKI S + D +G S+GFGFV F+NP+DA +A+
Sbjct: 198 FTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVT 257
Query: 250 AMNGSVI--GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
M+ + + LY RAQKK ER L+ ++E+++ ER+ +Y+G N+YVKN+DD V D
Sbjct: 258 EMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVND 317
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
+ LK +F G ITSAKVM D+ G +KGFGFVCF P+EA+KAV +G M+ KPLYVA
Sbjct: 318 DILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 377
Query: 368 IAQRKEDRQAHLQLQYAQHMAGIEGSSANVIP 399
+AQRKEDR+A L QY Q +A I +A +P
Sbjct: 378 LAQRKEDRKAQLASQYMQRLASIRMHNAGSMP 409
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P+ +L++ +L DVTE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 12 TPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPAD 71
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN ++ K + +I+ Q R + + N+++KN+D
Sbjct: 72 AERALDTMNFDMMYGKPI------------RIMWSQ----RDPSMRRSGAGNIFIKNLDK 115
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ + FS G I S KV DE+ +KG+GFV F + E A KA+ +G +L K
Sbjct: 116 SIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKK 175
Query: 364 LYVAIAQRKEDR 375
+YV Q + R
Sbjct: 176 VYVGKFQPRTAR 187
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEK--HKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
MLA P++QKQ+LGER+YPL+E+ PD V KITGM+LEMDNSELL++LE+ E L K
Sbjct: 581 MLAQALPQEQKQMLGERIYPLIERIYQGPD-VGKITGMMLEMDNSELLMMLENEELLQSK 639
Query: 597 VEEAVQVLKLSEAK 610
V EA VL S+ +
Sbjct: 640 VSEAASVLASSKGQ 653
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/392 (50%), Positives = 269/392 (68%), Gaps = 4/392 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ LF+ FS + S+RVC+D+ T RS Y YVNF P DA RA++
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++GK +RI WS RDP R+SG N+F+KNL +SIDN + + F FGNI+SCKV
Sbjct: 78 TMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 137
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E+ SKG+GFV FETEESA AIE +NG + K++YVG+F ++ R+ + A +
Sbjct: 138 ANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARR 197
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L + FSKFGKI S + D +G S+GFGFV F+NP+DA +A+
Sbjct: 198 FTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVT 257
Query: 250 AMNGSVI--GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
M+ + + LY RAQKK ER L+ ++E+++ ER+ +Y+G N+YVKN+DD V D
Sbjct: 258 EMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVND 317
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
+ LK +F G ITSAKVM D+ G +KGFGFVCF P+EA+KAV +G M+ KPLYVA
Sbjct: 318 DILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 377
Query: 368 IAQRKEDRQAHLQLQYAQHMAGIEGSSANVIP 399
+AQRKEDR+A L QY Q +A I +A +P
Sbjct: 378 LAQRKEDRKAQLASQYMQRLASIRMHNAGSMP 409
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P+ +L++ +L DVTE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 12 TPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPAD 71
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN ++ K + +I+ Q R + + N+++KN+D
Sbjct: 72 AERALDTMNFDMMYGKPI------------RIMWSQ----RDPSMRRSGAGNIFIKNLDK 115
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ + FS G I S KV DE+ +KG+GFV F + E A KA+ +G +L K
Sbjct: 116 SIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKK 175
Query: 364 LYVAIAQRKEDR 375
+YV Q + R
Sbjct: 176 VYVGKFQPRTAR 187
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 56/74 (75%), Gaps = 3/74 (4%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEK--HKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
MLA P++QKQ+LGER+YPL+E+ PD V KITGM+LEMDNSELL++LE+ E L K
Sbjct: 581 MLAQALPQEQKQMLGERIYPLIERIYQGPD-VGKITGMMLEMDNSELLMMLENEELLQSK 639
Query: 597 VEEAVQVLKLSEAK 610
V EA VL S+++
Sbjct: 640 VSEAASVLASSKSQ 653
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 256/676 (37%), Positives = 357/676 (52%), Gaps = 102/676 (15%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E
Sbjct: 45 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 104
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 105 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKV 164
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR A
Sbjct: 165 AQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 224
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+D ++T++ F FG+I S ++ D++G SRGFGFVN+ N + A A+
Sbjct: 225 FTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVA 284
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MN + S+ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+ DD+ DE+
Sbjct: 285 EMNEKEVKSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEK 344
Query: 310 LKAHFSQCGTITSAKVMRD----------------------------------------- 328
L+ F+ GTITSAKVMRD
Sbjct: 345 LRDLFTPYGTITSAKVMRDAAERSPTPEAEEKEAAKETKDSEEKEVKTEETAEVKTEAAE 404
Query: 329 -----------EKGINKGFG------FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+K K FG FVCFSSP+EASKAV + M++ KPLYVA+AQR
Sbjct: 405 KKTEEGEATEEKKTEKKAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQR 464
Query: 372 KEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTT------PPGIVSQVP--- 418
K+ R++ L+ +Q + + ++A +P + P+++Y PPG +P
Sbjct: 465 KDVRRSQLEASIQARNTIRQQQAAAAAGMPQPFMQPAVFYGAGQQGFMPPGQRGGMPFAP 524
Query: 419 ----PRP----GLMYQPLGLRTGWRANGFVPPTR---PAFQVSPLPVNPKHNRQNRGRMN 467
P P G P G R +PP + P FQ P+ G
Sbjct: 525 QGGMPMPNMPGGRPQYPGPFPQGGRG---MPPNQQLPPNFQGMPM-----------GMQA 570
Query: 468 GNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGG 527
+P + M Q+ + + ++ +G G GG
Sbjct: 571 PGGIPNGMGYPMPQAFGRGGGGRGVPGMPMNMRGGPGFGRGGPQMGRGRGQPA----PGG 626
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLL 587
A +P N L A P QQKQ+LGE LYP ++ +P+L KITGMLLEMDN+ELL LL
Sbjct: 627 QPAGEPASANQALLAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLL 686
Query: 588 ESPESLAVKVEEAVQV 603
+ E+L KV+EA+ V
Sbjct: 687 DDEEALRGKVDEALNV 702
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 259/664 (39%), Positives = 356/664 (53%), Gaps = 92/664 (13%)
Query: 4 VPPTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
P T + P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+
Sbjct: 32 APATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 91
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
RA++ N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F
Sbjct: 92 DTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFA 151
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 152 AFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 211
Query: 182 V--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
A +TN+++KN+D +V +E + F KFG+I S ++RD G SRGFGFVNF
Sbjct: 212 QSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFS 271
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ A+ A+E MN + S+ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVK
Sbjct: 272 THESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVK 331
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRD---------------------EK-------- 330
N+ DDV D++L+ F GTITSAKVMRD EK
Sbjct: 332 NLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEP 391
Query: 331 ----------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+
Sbjct: 392 AAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVAL 451
Query: 369 AQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY----------------- 407
AQRK+ R++ L+ +Q ++ + ++A + Y P+++Y
Sbjct: 452 AQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIPGAQRGGMF 511
Query: 408 TTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMN 467
PG++ +P RPG P + G R G P FQ P+ Q G N
Sbjct: 512 PPQPGMMMGMPGRPGQYPGPFPGQQGGRGVGPNQQIPPNFQGLPMGA-----MQGPGIPN 566
Query: 468 GNMLPQVGAHYMQQSSQSAA--SSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNS 525
G P V + + GG+ G++R G G ++G
Sbjct: 567 GMGYPMVQGQFGGGRGRGQVPGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGP 626
Query: 526 G---GVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSE 582
GV+ + L+A P+QQKQ+LGE LYP ++ +P+L KITGMLLEMDN+E
Sbjct: 627 ETPVGVLTAQ------ALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTE 680
Query: 583 LLLL 586
LL L
Sbjct: 681 LLGL 684
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 273/713 (38%), Positives = 369/713 (51%), Gaps = 126/713 (17%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P+ T P ASLYVG+L VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 47 PSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 107 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 166
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 167 GNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 226
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KNLD++VT E E F K+G I S I D E G SRGFGFVNF
Sbjct: 227 KFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVK 286
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+ A A+E +N + LY RAQKK ERE+ LR Q E R E+ KY+G N+YVKN
Sbjct: 287 HESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKN 346
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD---------EK--------------------- 330
+ DD+ DE+L+ F G ITSA+VMRD EK
Sbjct: 347 LTDDIDDEKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEE 406
Query: 331 ----------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
G +KGFGFVCFS+P+EASKAV + M++ KPLYVA+
Sbjct: 407 ESSDKSDKAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVAL 466
Query: 369 AQRKEDRQAHLQLQY-------AQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP-- 419
AQRK+ R++ L+ Q +A G S P P++YY PPG +P
Sbjct: 467 AQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQ---PFMQPAVYY--PPGQQGFIPANA 521
Query: 420 ----------RPGLMYQPL-GLRTGWRANGFVPPTRPAFQVSP---LPVN---------P 456
+PG++ + G R G A GF P + ++P LP N P
Sbjct: 522 GQRGGMAFGQQPGMVLPGMPGGRPGQFAGGF-PGQQGGRGINPNQQLPPNAFGMGAQGLP 580
Query: 457 KHNRQNRGRM-NGNMLPQVGAHYMQQSSQSAASSKDSSNQQ-------------KGGQSK 502
Q G + NG PQ A + + Q GGQ+
Sbjct: 581 MGALQGPGGLPNGLSYPQAIAQVQASFGRGGGGRGQAPGMQGMPPSMGNAPGMRAGGQAF 640
Query: 503 YVPNG--------RIRELNKGSGVSLGT----FNSGGVMARKPDMLNGMLAAPSPEQQKQ 550
G R + +G+G + G ++GG P + L+A P QQKQ
Sbjct: 641 TQGRGMPPQQGVARPGQAGRGAGPAQGMPPRDESAGG-----PTLNLQALSAAPPAQQKQ 695
Query: 551 ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
+LGE +YP ++ +P+L KITGMLLEMDN+ELL L++ +L KV+EA+ V
Sbjct: 696 MLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLSLVDDEAALRAKVDEAINV 748
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 245/625 (39%), Positives = 349/625 (55%), Gaps = 54/625 (8%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
+ T ASLYVG+L+P V + LF+ FS +AS+RVC+D+ T +S Y YVNF D
Sbjct: 46 VSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDG 105
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AIE N++ + G+ RI WS RDP R++G N+F+KNL +IDN L + F FG I
Sbjct: 106 EKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKI 165
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLP 184
+SCKVAT + G SK GFV +ET E+A AAIEN+NG + D+ +YVG+ I K DR
Sbjct: 166 LSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFE 225
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A +TN++ KN+D D +EE + F +GKI S+ + +D G S+GFGFVNF+N + A
Sbjct: 226 EMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESA 285
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+A++ +N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N+++KN+DD
Sbjct: 286 VKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDT 345
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ E+L+ F G+ITSA+VM DE G +KGFGFVCFSSPEEA+KA+ + M++ KPL
Sbjct: 346 IDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPL 405
Query: 365 YVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTTPPGIVSQVPPRP 421
YVA+AQRK+ R++ L Q+Q M ++ IP + P ++Y PG PP
Sbjct: 406 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQPGF---FPPN- 461
Query: 422 GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQ 481
R NG P P + + P + R NG +P G
Sbjct: 462 ------------GRGNGPFPGPNPQMMMPRGQIPPPQGQWPRPGPNGQPVPVYG------ 503
Query: 482 SSQSAASSKDSSNQQKGG--QSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGM 539
D +N GG Q Y PN R N+ R+ L +
Sbjct: 504 --MPPVYGGDFNNGANGGRQQRGYYPN---RNQNQ--------------KGRQQKDLAAI 544
Query: 540 LAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
+A +QQK+ILGE LYP + + +P+ KITGM+L++DN E+L LLE E
Sbjct: 545 IANAPADQQKRILGEELYPKIVSTGKAQEPEAAGKITGMMLDLDNEEILALLEDDELFNT 604
Query: 596 KVEEAVQVLKLSEAKVSTQEAIHPN 620
E+A+ + E K S++ A N
Sbjct: 605 HFEDALTAFE--EYKKSSEAATAEN 627
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/405 (49%), Positives = 276/405 (68%), Gaps = 6/405 (1%)
Query: 5 PPTAT-TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PP AT + ASLY+GDLH DVT+ LF+ FS + S+RVC+D+T+ S Y YVNF P
Sbjct: 44 PPNATYSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 103
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N +HG+ +RI WS RDP AR++G N+F+KNL IDN + + F F
Sbjct: 104 ADAERALDTMNFETIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLF 163
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA EDG S+G+GFV FETEESA AIE +NG + K++YVG+F ++ R+
Sbjct: 164 GNILSCKVAADEDGSSRGYGFVHFETEESAQIAIEKVNGMLLSGKKVYVGKFQTRAQRLK 223
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L KYTN+F+KN + +E L + FSK+G+I S ++ D +G +GFGFV + +P
Sbjct: 224 ELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDADGKPKGFGFVAYADP 283
Query: 242 DDARRALEAMNGSVI-GSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
D A++A++ +N + G+ + L RAQKK+ER L+ ++E ++ER+ +Y+G N+YVK
Sbjct: 284 DAAQKAVDDLNEKTLEGTDLKLSVCRAQKKSERTADLKRKYEALKQERVQRYQGVNLYVK 343
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
NID+++TDE L+AHF+ GTITSAKVM DE G +KGFGFVCF PEEA+ AV + M+
Sbjct: 344 NIDEELTDEGLRAHFASFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMM 403
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIE-GSSANVIPSGYP 403
KPLYVA+AQRKEDR+A L QY Q +A + G N +P P
Sbjct: 404 GSKPLYVALAQRKEDRRAQLASQYMQKLATLRMGQQTNGVPGMAP 448
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Query: 525 SGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL--VAKITGMLLEMDNSE 582
SG ++ + + + MLA +P++QKQ+LGER+Y L+EK P KITGM+LE+DN+E
Sbjct: 593 SGIIIQGQETLTSHMLAQAAPQEQKQLLGERIYALIEKLFPSHKDAGKITGMMLEIDNAE 652
Query: 583 LLLLLESPESLAVKVEEAVQVL 604
L+++L+ + KVEEA VL
Sbjct: 653 LIMMLQDGDLFRSKVEEANSVL 674
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 259/681 (38%), Positives = 368/681 (54%), Gaps = 86/681 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLHP V+D L FSE + S RVC+D T +S YGYVNF P A +A+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
V N+ L G+ +RI WS RDP RKSG N+F+KNL +SI+ L + F FG I+SCK+
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
E+G+SKG+GFV FE EE A AIE +N + D+ +YVG+FI K++R + K+
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KN + E L E FS+FG+I S + +D G S+GFGFV + +PD A A+ M
Sbjct: 193 NLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTM 252
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYK-GSNVYVKNIDDDVTDEEL 310
+G I +VLY ARAQ+K ER++ L+ + E++R ER Y N+YVKN+DD++ D+ L
Sbjct: 253 HGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRL 312
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ FS G+ITSAKVM+D +KGFGFVCF++PE+A++AV +G ++ KPLYVA+AQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 371 RKEDRQAHL----QLQYAQHMA-------GIEGSSA--NVIPSGYPSLYYTTP------- 410
RKEDR+A L Q + AQ+ A + G +A N P + + + P
Sbjct: 373 RKEDRRAKLIEEHQQRLAQYRAPVASMIPAVPGHAAPHNYFPPAFQAQRFYHPSSAVLSS 432
Query: 411 ----------PGIVSQVPPRPGLM-YQP----------------LGLRTGWRANGFVP-- 441
P + +P RP + Y P LRT +P
Sbjct: 433 QPRWNRAAGIPAQIGAIPNRPPVAGYYPGAPNPAAITANQMAAFAQLRTPGVNRPMMPNG 492
Query: 442 ----PTRPAFQVSPLPVNPKHN--RQNRGRMNGNMLPQV-----GAHYMQQSSQSAASSK 490
PT P Q + + N N RQ GR G ++PQV G + ++ S +
Sbjct: 493 MSSMPTTPHLQTAAV-FNQAANQQRQATGR-QGVVVPQVLGATTGGLNQRPTAASVVAGP 550
Query: 491 DSSNQQKGGQ-SKYVPNG--------------RIRELNKGSGVS-----LGTFNSGGVMA 530
S+N Q + VP +R VS + T N+ +++
Sbjct: 551 PSANPTMRPQVASQVPRAVMHSGMPNITNATTNVRFHQTARNVSAQPTLVPTGNTSTLLS 610
Query: 531 RKPD---MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLL 587
D + LA S QK+ LGE L+P ++ P L K+TGMLL +DN+E++ LL
Sbjct: 611 PLGDQGQLTISALAQLSEVDQKRALGEHLFPRIQTMYPTLARKLTGMLLGVDNAEVINLL 670
Query: 588 ESPESLAVKVEEAVQVLKLSE 608
ES + L K EE + VL+ S+
Sbjct: 671 ESDDLLRAKCEEGISVLESSQ 691
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 234/599 (39%), Positives = 342/599 (57%), Gaps = 52/599 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDL P+V++ LF+ F++ ++++RVC+D+ T RS Y YVN+ + DA RA++
Sbjct: 10 SSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + GK RI WS RDP RKSGV N+F+KNL + ID+ L + F FGNI+SCKV
Sbjct: 70 TLNNTPIRGKPCRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
T ++ SKG GFV +E+++SA+ AI +NG + ++++VG F +R P+ K+T
Sbjct: 130 VTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKERGQPT-EIKFT 188
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
N+F KNL DVT + L E + +G I ++ I DE G S+GF F NF++ D A+ +E
Sbjct: 189 NVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNVVEI 248
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
NG V K LYA RAQKK ERE L+H FE KY+G N+Y+KNIDD + +++L
Sbjct: 249 ENGKVFHGKPLYAGRAQKKIEREAELKHTFET-------KYQGVNLYIKNIDDSIDNDKL 301
Query: 311 KAHFSQCGTITSAKVMRDEKG-INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
+ FSQ GTITSA VM+D+K +KGFGFVC++SP+EA++AV +G M+ KPLYVA+A
Sbjct: 302 REVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVTEMNGRMIGTKPLYVALA 361
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRK+ R+A L++Q+ Q G + P+ Y+ P + P P ++YQ
Sbjct: 362 QRKDIRRAQLEMQHQQKFKA--GMRQTMAPA------YSGGPVFFTPAPVTPAVVYQ--- 410
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASS 489
Q+ P P R G G Q G +Y++ Q +
Sbjct: 411 ------------------QMMPRP------RNWNGAPVGVPGNQYGMNYVRGGGQPRPNG 446
Query: 490 KDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFN---SGGVMARKPDMLNGMLAAPSPE 546
+ + + GQ P+ + V T + G L+ +LA P+ +
Sbjct: 447 QRPTGPRPNGQR---PDSAQPIATQQPAVDQATQQPQAASGASQEAAPTLSSILALPTRD 503
Query: 547 QQKQILGERLYPLVEKHKPDLVAKITGMLLE-MDNSELLLLLESPESLAVKVEEAVQVL 604
QQ LGE LYPL+ +P+L KITGMLL+ + EL L + + L K++EA+ VL
Sbjct: 504 QQNVALGELLYPLIHNSQPELAGKITGMLLDSLPVEELFALTQRSDLLNEKIKEAIDVL 562
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
PT +++ +L DVT +L + + + ++ +V + D TG+S + + NF S
Sbjct: 182 PTEIKFTNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADA 241
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDP----------DARKSGVANLFVKNLIESIDNVR 115
A +E++N HGK L + + + + GV NL++KN+ +SIDN +
Sbjct: 242 AKNVVEIENGKVFHGKPLYAGRAQKKIEREAELKHTFETKYQGV-NLYIKNIDDSIDNDK 300
Query: 116 LQEMFQNFGNIISCKVATSEDG-KSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGR 174
L+E+F FG I S V + SKG GFV + + + A A+ +NG +G K +YV
Sbjct: 301 LREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVTEMNGRMIGTKPLYVAL 360
Query: 175 FIKKSDR 181
+K R
Sbjct: 361 AQRKDIR 367
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 273/713 (38%), Positives = 368/713 (51%), Gaps = 126/713 (17%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P+ T P ASLYVG+L VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 47 PSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 107 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 166
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 167 GNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 226
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KNLD+ VT E E F K+G I S I D E G SRGFGFVNF
Sbjct: 227 KFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVK 286
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+ A A+E +N + LY RAQKK ERE+ LR Q E R E+ KY+G N+YVKN
Sbjct: 287 HESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKN 346
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD---------EK--------------------- 330
+ DD+ DE+L+ F G ITSA+VMRD EK
Sbjct: 347 LTDDIDDEKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEE 406
Query: 331 ----------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
G +KGFGFVCFS+P+EASKAV + M++ KPLYVA+
Sbjct: 407 ESSDKSDKAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVAL 466
Query: 369 AQRKEDRQAHLQLQY-------AQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP-- 419
AQRK+ R++ L+ Q +A G S P P++YY PPG +P
Sbjct: 467 AQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQ---PFMQPAVYY--PPGQQGFIPTNA 521
Query: 420 ----------RPGLMYQPL-GLRTGWRANGFVPPTRPAFQVSP---LPVN---------P 456
+PG++ + G R G A GF P + ++P LP N P
Sbjct: 522 GQRGGMAFGQQPGMVLPGMPGGRPGQFAGGF-PGQQGGRGINPNQQLPPNAFGMGAQGLP 580
Query: 457 KHNRQNRGRM-NGNMLPQVGAHYMQQSSQSAASSKDSSNQQ-------------KGGQSK 502
Q G + NG PQ A + + Q GGQ+
Sbjct: 581 MGALQGPGGLPNGLSYPQAIAQVQASFGRGGGGRGQAPGMQGMPPSMGNAPGMRAGGQAF 640
Query: 503 YVPNG--------RIRELNKGSGVSLGT----FNSGGVMARKPDMLNGMLAAPSPEQQKQ 550
G R + +G+G + G ++GG P + L+A P QQKQ
Sbjct: 641 TQGRGMPPQQGVARPGQAGRGAGPAQGMPPRDESAGG-----PTLNLQALSAAPPAQQKQ 695
Query: 551 ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
+LGE +YP ++ +P+L KITGMLLEMDN+ELL L++ +L KV+EA+ V
Sbjct: 696 MLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLSLVDDEAALRAKVDEAINV 748
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 263/621 (42%), Positives = 371/621 (59%), Gaps = 54/621 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLHPDVT+ L++ FS ++ S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP R+SG+ N+F+KNL SIDN L + F FG+I+S KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+E G S+G GFV FET E+A AI +NG + D++++VG F + R L + A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL D+ E+ L + FS+FGK S+ + RD NG SRGFGF+NF+ ++A++A++
Sbjct: 190 FTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+AER+ L+ +FE+ ++ER +Y+G N+YVKN+DD + D+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS G ITSAKVM E +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LKEVFSTYGVITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQH-----MAGIEGSSANVIPSGYPS----LYYTTPPGIVSQVPPR 420
QRKE+R+A L QY + ++ + ++ ++P+ + S +YY++ ++ + P
Sbjct: 369 QRKEERKAILTNQYRRRLSRSVLSSFQQPTSYLLPAVHQSTTQTMYYSSAS--IAPMQPD 426
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQ 480
P QP G + PP A V PL P P +
Sbjct: 427 PRWTAQPHG------PSSTCPPA--ASVVQPLSTAPH--------------PCIHLSSAS 464
Query: 481 QSSQSAASSKDSSN-----QQKGGQSKYVPNGRIRELNKGS-------GVSLGTFNSGGV 528
Q+S ++ N GG+ +P G+ ++GS GV T G
Sbjct: 465 QASSQVPHTQRVVNIGTQTTGPGGEGSCIP-GQPLLAHRGSSAVHSAHGVQESTVYVPG- 522
Query: 529 MARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLE 588
+P ++ + AAP E QKQ++GERLY L+ L KITGMLLEMDN ELLLLLE
Sbjct: 523 --HQPLTVSMLDAAPLHE-QKQMIGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLE 579
Query: 589 SPESLAVKVEEAVQVLKLSEA 609
SPESL K+EEAV VLK A
Sbjct: 580 SPESLHAKIEEAVAVLKAHRA 600
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 159/296 (53%), Gaps = 18/296 (6%)
Query: 93 DARKSG--VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFET 149
D R G +++L+V +L + L EMF G I+S +V +S G+ ++ F+
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + I I S R + N+F+KNL++ + + L +
Sbjct: 62 PADAERALDTMNFEMIKGQPIR----IMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + +E+G SRGFGFV+F+ + A++A+ MNG ++ + ++ + +
Sbjct: 118 TFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
+RE L R L + +N+YVKN+ D+ ++ L+ FSQ G S KVMRD
Sbjct: 177 QKREAEL--------GARALGF--TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGF+ F EEA KAV+ +G + + LYV AQ++ +RQ L+ ++ Q
Sbjct: 227 NGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQ 282
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/402 (49%), Positives = 275/402 (68%), Gaps = 17/402 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI---- 67
ASLYVGDLH DVT+ L++ FS + S+ VC+D T RS Y YVNF P D +
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTST 70
Query: 68 ---------RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQE 118
RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L +
Sbjct: 71 SSSPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYD 130
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178
F FGNI+SCKV E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF +
Sbjct: 131 TFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 189
Query: 179 SDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
+R L + A ++TN+++KN +V +E L E FS+FGK S+ + RD +G S+GFGFV
Sbjct: 190 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 249
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
+++ +DA +A+E MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+
Sbjct: 250 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNL 309
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
Y+KN+DD + DE+L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G
Sbjct: 310 YIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG 368
Query: 357 YMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI 398
++ KPLYVA+AQRKE+R+AHL QY Q +AG+ AN I
Sbjct: 369 RIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAI 410
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 588 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 647
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 648 EAVAVLQAHHAK 659
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/594 (40%), Positives = 341/594 (57%), Gaps = 33/594 (5%)
Query: 28 LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87
+F +AS+RVC+D+ T RS Y YVNF + DA RA++ N T + G RI W
Sbjct: 7 VFYKIKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMW 66
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED-GKSKGHGFVQ 146
S RDP RKSGV N+FVKNL SIDN L + F FGNI+SCKVA G SKG+G+V
Sbjct: 67 SQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVH 126
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
+ET E+A AI +NG + ++VG F K+ DR A +TN ++KN+ + T+
Sbjct: 127 YETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDR---PDADDWTNCYVKNIPTQWTDAD 183
Query: 207 LVEKFSKFGKIASLLIARDENGT--SRGFGFVNFDNPDDARRALEAMNGSVIGS-----K 259
L+++F FGK+ S ++ +D +RGFGFVN++ D A +A++A+NG +
Sbjct: 184 LLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDT 243
Query: 260 VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT 319
+Y +AQK++ERE+ LR++FE+ + ERI KY+G N+YVKN+DD ++D+EL+ F++CGT
Sbjct: 244 EMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGT 303
Query: 320 ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
ITS++VMRD G ++GFGFVCFS+PEEA+KAV +G ++ KP+YVA+AQRKE R+A L
Sbjct: 304 ITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQL 363
Query: 380 QLQYAQHMAGIEGSSANVIPSGYPSLYYTTPP--GIVSQVPP--RPGLMY----QPLGLR 431
+ Q+AQ AG+ +P G P +Y P G Q+PP R G MY P G++
Sbjct: 364 EAQHAQQRAGM--VVGRGMPMGQPPMYGAAPMFYGQPGQLPPQARQGFMYPQQMMPRGVQ 421
Query: 432 TGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKD 491
G G P PA P+P + A ++ +AA+S
Sbjct: 422 RGPMPYGARVPGAPAPGGYPMPWLRHAHAAAAWPAASWPSGPRPAGSLRALRPTAATSST 481
Query: 492 SSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQI 551
P G + S + A P++ M
Sbjct: 482 RLTPATTPARDVPPQGVMPPAAPVQNAGPEPLTSAALAAASPEIQKNM------------ 529
Query: 552 LGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
+GERLYPL+ + +P+L KITGMLLEMDN ELL LLESPE+L K++EA+ VL+
Sbjct: 530 IGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEAMTVLE 583
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 151/293 (51%), Gaps = 20/293 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V +L + + L+D FS F ++ S +V + TTG S YGYV++ + A AI
Sbjct: 79 GNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIA 138
Query: 72 VKNHTQLHGKMLRIS-WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + G + + + R N +VKN+ + L + F+ FG ++S
Sbjct: 139 KINGMLIAGTEVFVGHFQKRQDRPDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAV 198
Query: 131 VA--TSEDGKSKGHGFVQFETEESANAAIENLNGTTVG-----DKRIYVGRFIKKSDR-- 181
V + ++G GFV +E ++A+ A++ LNG + D +YVG+ K+S+R
Sbjct: 199 VMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERER 258
Query: 182 --------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSR 231
+ KY NL++KNLD ++++ L E F++ G I S + RD NG SR
Sbjct: 259 ELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSR 318
Query: 232 GFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKR 284
GFGFV F P++A +A+ MNG +I K +Y A AQ+K R L Q ++R
Sbjct: 319 GFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQQR 371
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 22/198 (11%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTT-GRSTCYGYVNFL--- 61
P A + YV ++ TD +L F F + S V KD+ + +G+VN+
Sbjct: 162 PDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESD 221
Query: 62 SPHDAIRAIEVKNH-------TQLH-GKMLRISWSCRDPDAR----------KSGVANLF 103
+ H A+ A+ K++ T+++ GK + S R+ + K NL+
Sbjct: 222 AAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLY 281
Query: 104 VKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
VKNL + + + L+E F G I S +V +G S+G GFV F T E AN A+ +NG
Sbjct: 282 VKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGK 341
Query: 164 TVGDKRIYVGRFIKKSDR 181
+ K +YV +K R
Sbjct: 342 LISGKPVYVALAQRKEVR 359
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 253/697 (36%), Positives = 368/697 (52%), Gaps = 103/697 (14%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D
Sbjct: 58 PHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSD 117
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 118 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 177
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR
Sbjct: 178 ILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 237
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A +TN+++KN+ ++VT++ + F+ FG + S +ARD+ G SRGFGFVNF +
Sbjct: 238 EEMKANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEA 297
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A++ +NG + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+DD
Sbjct: 298 AAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKASKYQGVNLYIKNLDD 357
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEK--------------------------------- 330
+V DE+L+ F+ G ITSAKVMRD
Sbjct: 358 EVDDEKLRQLFADFGPITSAKVMRDNATESGNEDEGSSDDKENEPKKEEGEEKAEEAKSE 417
Query: 331 ------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
G +KGFGFVCFS+P++A+KAV + M++ KPLYVA+AQRK
Sbjct: 418 DKEDADKKADKKSDKKPHGKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQRK 477
Query: 373 EDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTT------PPGIVSQVPPRPG 422
+ R++ L+ +Q + + ++A +P Y P ++Y P G P+PG
Sbjct: 478 DVRKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPPVFYAAGQQPVFPQGGRGMAFPQPG 537
Query: 423 L-MYQPLGLRTGWRANGF------------------VPPTRPAFQVSPLPVNPKHNRQNR 463
+ M G R G G+ +P P P P NP+ +
Sbjct: 538 MAMPAVQGGRPGQFPGGYPQQGGRGGLPQQMPPVYGIPGQFPPGAPYPQPGNPQFLAAIQ 597
Query: 464 GRMNGNM-------------LPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIR 510
M +PQ +++ NQ G+ R
Sbjct: 598 QVQQATMGGGRGGPQGGRGPVPQGMPMPGPGMPGFPPNARQGGNQPGAGRGANPNAPRNA 657
Query: 511 ELNKGS-GVSLGTFNSGGVMARKPDMLNGMLAAPS-PEQQKQILGERLYPLVEKHKPDLV 568
+G G NSG ++ ++ + AA S P QQKQILGE ++P ++ +P+L
Sbjct: 658 PFPQGGRGAPAQDLNSGSLIQQQ------LAAAGSNPGQQKQILGEVIFPKIQAIQPELA 711
Query: 569 AKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
KITGMLLEMDN+EL+ L+E +L KV+EA+ V +
Sbjct: 712 GKITGMLLEMDNAELVNLIEDESALKAKVDEALGVYE 748
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/400 (49%), Positives = 275/400 (68%), Gaps = 6/400 (1%)
Query: 6 PTAT-TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P AT + ASLY+GDLHPDVT+ LF+ FS + S+RVC+D+T+ S Y YVNF P
Sbjct: 48 PNATYSMASLYIGDLHPDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPA 107
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
DA RA++ N +HG+ +RI WS RDP AR++G N+F+KNL IDN + + F FG
Sbjct: 108 DAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFG 167
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV-- 182
NI+SCKVAT E+G SKG+GFV FETE SA AIE +NG + DK+++VG+F ++ R+
Sbjct: 168 NILSCKVATDEEGNSKGYGFVHFETEASALTAIEKVNGMLLSDKKVFVGKFQPRAQRMKE 227
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
L KYTN+F+KN + E+ L E FSK+G+I S ++ D +G +GFGFV F +PD
Sbjct: 228 LGESGLKYTNVFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTDNSGKPKGFGFVAFVDPD 287
Query: 243 DARRALEAMNGSVI-GSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
A +A++ +N S + G+ + L RAQKK+ER L+ ++E ++ER+ +Y+G N+YVKN
Sbjct: 288 AAIKAVDTLNESTLEGTDLKLSVCRAQKKSERTAELKRKYEALKQERVQRYQGVNLYVKN 347
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
I++++TD+ L+ HF+ G+ITSAKVM DE G +KGFGFVCF PEEA+ AV + M+
Sbjct: 348 IEEEMTDDGLREHFANFGSITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIG 407
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIE-GSSANVIP 399
KPLYVA+AQRKEDR+A L QY Q +A + G N +P
Sbjct: 408 AKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQTNGVP 447
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 525 SGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL--VAKITGMLLEMDNSE 582
SG V++ + + + MLA +P++QKQ+LGER+Y L+EK P+ KITGM+LE+DN+E
Sbjct: 632 SGIVISGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAE 691
Query: 583 LLLLLESPESLAVKVEEAVQVL 604
L+++L+ + KVEEA VL
Sbjct: 692 LIMMLQDEDLFRSKVEEAFTVL 713
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 267/714 (37%), Positives = 372/714 (52%), Gaps = 123/714 (17%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L VT+ LF+ FS+ S+AS+RVC+D+ + RS Y YVN+ + D
Sbjct: 55 PHPQASASLYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTAD 114
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 115 GEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGN 174
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E G SKG+GFV +ET+E+A AI+++NG + +K+++VG I K DR
Sbjct: 175 ILSCKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKF 234
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPD 242
A +TN+++KN+ + TEE E F KFG + S +ARD E G SRGFGFVNF N +
Sbjct: 235 EEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHE 294
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
A A++ +NG + LY RAQKK ERE+ LR +E R E+ KY+G N+YVKN+D
Sbjct: 295 HAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLD 354
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEK-------------------------------- 330
DD+ DE+L+ F G+ITSAKVMRD
Sbjct: 355 DDIDDEKLRELFQSFGSITSAKVMRDTPAETAEAEEKKEKDEEKNKENKDTKETKETKKE 414
Query: 331 -----------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373
G +KGFGFVCF++P+EA+KAV+ + M++ KPLYVA+AQRK+
Sbjct: 415 GEAETEEASAPKAKRSLGKSKGFGFVCFNNPDEATKAVSDMNQRMVNNKPLYVALAQRKD 474
Query: 374 DRQAHLQLQY-AQHMAGIEGSSANVIPSGYPSLYYTTP---------PGIVS------QV 417
R++ L+ A++ ++ ++A +G P Y P PG + Q
Sbjct: 475 VRKSQLEASIQARNQIRMQQAAAQ---AGMPQQYMQAPMFFPPGAQQPGFLPQGGRGMQF 531
Query: 418 PPRPGL-MYQPLGLRTGWRANGFVPPTR-----PAFQVSP----------LPVNPKHNRQ 461
PP+ G+ + G R G GF PP + PA Q P P ++ +Q
Sbjct: 532 PPQAGMPIPGAQGGRPGQFQAGF-PPQQAGRGAPAGQQMPPNMYGMGPGQFPAGGQYPQQ 590
Query: 462 N----------------------RGRMNG---NMLPQVGAHYMQQSSQSAASSKDSSNQQ 496
N RG M G NM +G M Q Q A
Sbjct: 591 NNPQFLAAMQAAQLTAGRGGPNARGPMQGMPPNMAMPMGQQGMPQFQQGARQGGMPGRGA 650
Query: 497 KGGQSKYVPNGRIRELNKGSGVSLGTFNS-------GGVMARKPDMLNGMLAAPSPEQQK 549
+ G+ G + +G + GGV A ML + A +P+QQK
Sbjct: 651 QAGRPGQFAGGFPPQAGRGMPQQIPGMQQIPQMAQEGGVPA---TMLQAQVQAVAPQQQK 707
Query: 550 QILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
QILGE L+P ++ +P+L KITGMLLEM+N EL+ L+E SL KV+EA+ V
Sbjct: 708 QILGEALFPKIQVLQPELAGKITGMLLEMENQELINLIEDDASLRAKVDEALTV 761
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 264/708 (37%), Positives = 370/708 (52%), Gaps = 117/708 (16%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D
Sbjct: 55 PHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNYNTTVD 114
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 115 GEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGN 174
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E G SKG+GFV +ET+E+A AI+++NG + +K+++VG I K DR
Sbjct: 175 ILSCKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKF 234
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPD 242
A +TN+++KN+ + TEE E F KFG + S +ARD E+G SRGFGFVNF N +
Sbjct: 235 EEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHE 294
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
A A++ +NG + LY RAQKK ERE+ LR +E R E+ KY+G N+YVKN+D
Sbjct: 295 HAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARMEKASKYQGVNLYVKNLD 354
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEK-------------------------------- 330
D++ DE+L+ F+ G ITSAKVMRD
Sbjct: 355 DEIDDEKLRELFAPFGAITSAKVMRDTPAETADAEDKKEKDEEKNKENKKEGEAETEEAS 414
Query: 331 --------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQ 382
G +KGFGFVCF++P+EA+KAV+ + M+ KPLYVA+AQRK+ R++ L+
Sbjct: 415 APKAKRPLGKSKGFGFVCFNNPDEATKAVSDMNQRMVSNKPLYVALAQRKDVRKSQLEAS 474
Query: 383 Y-AQHMAGIEGSSANVIPSGYPSLYYTTP---------PGIVS------QVPPRPGL-MY 425
A++ ++ ++A +G P Y P PG + Q PP+ G+ +
Sbjct: 475 IQARNQIRMQQAAAQ---AGMPQQYMQAPMFFPPGAQQPGFLPQGGRGMQFPPQAGMPIP 531
Query: 426 QPLGLRTGWRANGFVPPTR-----PAFQVSP----------LPVNPKHNRQN-------- 462
R G GF PP + PA Q P P ++ +QN
Sbjct: 532 GAQAGRPGQFQAGF-PPQQAGRGAPAGQQMPPNMYGMGPGQFPAGGQYPQQNNPQFLAAM 590
Query: 463 -----------------RGRMNG---NMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSK 502
RG M G NM +G M Q Q A + G+
Sbjct: 591 QAAQAAQLSAGRGGPNARGPMQGMPPNMAMPMGQQGMPQFQQGARQGGMPGRGAQAGRPG 650
Query: 503 YVPNGRIRELNKGSGVSLGTF-------NSGGVMARKPDMLNGMLAAPSPEQQKQILGER 555
G + +G + GGV +L + + P+QQKQILGE
Sbjct: 651 QFAGGFPPQAGRGMPQQIPGMPQMPQMPQEGGVPT---TLLQAQVQSVPPQQQKQILGEA 707
Query: 556 LYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
L+P ++ +P+L KITGMLLEM+N EL+ L+E SL KV+EA+ V
Sbjct: 708 LFPKIQVLQPELAGKITGMLLEMENQELINLIEDDASLRAKVDEALTV 755
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/448 (46%), Positives = 295/448 (65%), Gaps = 19/448 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ +P P QP
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF---------LPAMP----QPP 415
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNP 456
+ + G V PT+PA + + P P
Sbjct: 416 A-QAAYYGCGPVTPTQPAPRWTSQPPRP 442
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/400 (49%), Positives = 276/400 (69%), Gaps = 7/400 (1%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
PP+A SLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+
Sbjct: 43 PPSA----SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAA 98
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
D RA+E N++ + + RI WS RDP RK+G N+F+KNL E IDN L + F FG
Sbjct: 99 DGERALEQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG 158
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV-- 182
N++SCKVAT E G SKG+GFV +ET E+A AI+N+NG + DK++YVG I + +R
Sbjct: 159 NVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSK 218
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ A++TNL++KN+D +VT+E F + G + S +I RDE G SRGFGFVN++ +
Sbjct: 219 IDEMKAQFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHE 278
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+A++A++ +N + L+ +RAQKKAERE+ LR E+ R E++ KY+G N+YVKN+D
Sbjct: 279 EAQKAVDNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLD 338
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
DDV DE+L+A F GTITSAKVMRD+KG++KGFGFVC+SSPEEASKAV + M+ K
Sbjct: 339 DDVDDEKLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKMIGSK 398
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY 402
PLYV+ AQR+E R+ L+ Q AQ + ++A +P GY
Sbjct: 399 PLYVSHAQRREVRRQQLESQIAQRNQIMHQAAAGGMP-GY 437
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 238/616 (38%), Positives = 340/616 (55%), Gaps = 61/616 (9%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
+ T ASLYVG+L P VT+ +L++ FS S+ S+RVC+D+ T RS YGYVNF S
Sbjct: 48 SETLASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGE 107
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
RA+E N+ ++ G R+ WS RDP R+SG N+F+KNL +I+N L + F +FG ++
Sbjct: 108 RALEELNYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFGKVL 167
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPS 185
SCKVAT E+G SKG GFV +E++E+A AAIEN+NG + + IYVG + K DR
Sbjct: 168 SCKVATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRESRFQE 227
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
YTN+F+KN D++ TE+ L E F +G I S+ + D G ++GFGFVNF DDA
Sbjct: 228 MIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAV 287
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+EA+N K LY RAQKK ER L ++E R E++ KY+ N+++KN+D+ +
Sbjct: 288 KAVEALNDKEYKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSVNLFIKNLDESI 347
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
D L+ F GTITSAKVM DE G ++GFGFVC S+PEEA+KA++ + M+ KPLY
Sbjct: 348 DDARLEEEFKPFGTITSAKVMLDENGKSRGFGFVCLSTPEEATKAISEMNQRMVANKPLY 407
Query: 366 VAIAQRKEDRQAHLQLQY-AQHMAGIEGSSANVIPSGY-PSLYYTTPPGIV---SQVPPR 420
VA+AQ K R++ L Q A++ ++ + IP+ + ++Y PG++ ++VPP
Sbjct: 408 VALAQPKAIRRSQLAQQIQARNQMRMQQQAGPGIPNQFVQPIFYGQQPGMLPPGARVPPM 467
Query: 421 PGLMYQPLGL-RTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYM 479
+ Q G+ R G G P P Q P+PV + NGN PQ +Y
Sbjct: 468 GNQIPQFAGMPRPGPFPQGQFPRMAPNGQ--PMPV------YGQPVFNGNG-PQQRGYYP 518
Query: 480 QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGM 539
+ K+ N L +
Sbjct: 519 NNRQNKNRNQKEEGNS----------------------------------------LAAI 538
Query: 540 LAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L EQQK++LGE LYP V + P+ KITGM+L++DN E+L LLE E
Sbjct: 539 LPQLPLEQQKRVLGEELYPKVVATNKTQDPEAAGKITGMILDLDNQEILQLLEDEELFNT 598
Query: 596 KVEEAVQVLKLSEAKV 611
EA+Q + ++K
Sbjct: 599 HFNEALQAYEEYKSKT 614
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 242/618 (39%), Positives = 347/618 (56%), Gaps = 60/618 (9%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
A ASLYVG+L+P V + LF+ FS +AS+RVC+D+ + +S Y YVN+ D
Sbjct: 63 AENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGE 122
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
+AIE N+T + G+ RI WS RDP AR+SG N+F+KNL +IDN L + F FG I+
Sbjct: 123 KAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL 182
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPS 185
S KVAT + G+SK GFV +ETEE+A AAIE++NG + D+ +YVG+ + K DR L
Sbjct: 183 SVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEE 242
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A YTN+++KN+D TE+ E F+ FGKI S+ + +D G S+GFGFVNF+ + A
Sbjct: 243 MKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAA 302
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+E +N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N++VKN+D+ +
Sbjct: 303 KAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQI 362
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
E+L+ F GTITS+KVM D+ G +KGFGFVCFS+PEEA+KA+ + M++ KPLY
Sbjct: 363 DSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLY 422
Query: 366 VAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQVP 418
VA+AQRK+ R++ L Q+Q M ++A +P + P ++Y PP P
Sbjct: 423 VALAQRKDVRRSQLEQQIQARNQMRMQNAAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAP 482
Query: 419 ---PRPGLMYQPLG--LRTGWRANGFVPPTRPAFQVSPLPVN--PKHNRQNRGRMNGNML 471
P P +M + G W RP P+PV P + G+ NM
Sbjct: 483 FPGPNPQMMMRGRGQPFPEQW--------PRPGPNGQPVPVYGMPPQFQDFNGQ---NMR 531
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
PQ QQ Q + Y P N+ +G G V A+
Sbjct: 532 PQQQQQQQQQQQQQQQQQRG-----------YYP-------NRPAG--------GNVPAK 565
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLL 587
L ++A E QK+ILGE LY + + +P+ KITGM+L ++N E+L LL
Sbjct: 566 D---LAALIANAPLEAQKRILGEELYQRIVATGKAQEPEAAGKITGMMLGLENQEILDLL 622
Query: 588 ESPESLAVKVEEAVQVLK 605
+ E EEA+ +
Sbjct: 623 DDEELFNNHFEEALNAFE 640
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 231/613 (37%), Positives = 336/613 (54%), Gaps = 49/613 (7%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T ASLYVGDL P VT+ +L++ FS+ ++S+RVC+B+ T +S CY YVN+ +A A
Sbjct: 58 TFASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHA 117
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
++ + GK RI WS RDP RK G N+F+KNL IDN L + F FG I+SC
Sbjct: 118 LDTLAFCDIKGKQCRIMWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFGKILSC 177
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPA 187
K+AT E G SKG GFV ++ ESA AAIEN+NG + + +YV I + DR +
Sbjct: 178 KIATDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAPHIPRKDRESKMQEMI 237
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
+TN+++KN ++TE+ L E F +GK+ S + D G +RGFGFVNF++ +A +A
Sbjct: 238 KNFTNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKA 297
Query: 248 LEAMNGSVI-GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
++A+N + G ++LY RAQKK ERE+ LR Q+++ R+ERI KY+G N++VKN+DD +
Sbjct: 298 VDALNEKELEGGRILYVGRAQKKREREESLRKQWQQARQERISKYQGVNLFVKNLDDTID 357
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
D +LK F+ G ITSAKVM ++ G ++GFGFVC++ PEEA++A+N H M+ KPLYV
Sbjct: 358 DTKLKEEFAPYGKITSAKVMTNDAGKSRGFGFVCYTKPEEATRAINEMHQRMVMGKPLYV 417
Query: 367 AIAQRKEDRQAHLQLQYAQ------HMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPR 420
A+AQRKE R L Q+ Q A ++G + ++Y G +PP
Sbjct: 418 ALAQRKEVRHNQLSQQFQQRNQMRLQQAAVQGGMGQFV----APMFYGQNAGF---IPPM 470
Query: 421 PGLMYQPLGLRTGWRANGFVP-------PTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ 473
P G+R A P +RP +PV+P Q R NG +P
Sbjct: 471 PA------GVRGAPFAGNGAPQMMMQQGASRPG---QGVPVSPG---QFRVGPNGQPVPM 518
Query: 474 VGAHYMQ-QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARK 532
YMQ ++ + + P G ++ G G A
Sbjct: 519 ----YMQPMFNEYQQQQQQQQRYYQRQNHGNAPAGAEKK-----GDKPGEEQEAAATAVN 569
Query: 533 PDMLNGMLAAPSPEQQKQILGERLYPLVE----KHKPDLVAKITGMLLEMDNSELLLLLE 588
L L +PEQQK+ LGE LY +E + V KITGM+L MDN ++L +L+
Sbjct: 570 SASLADFLPKLAPEQQKRALGEELYAKIEATGKASDKEAVGKITGMMLSMDNKQILDMLK 629
Query: 589 SPESLAVKVEEAV 601
+ ++A+
Sbjct: 630 DDALFNTQFQQAL 642
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 22/301 (7%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQ 146
+D + A+L+V +L S+ L E+F G + S C+ A ++ KS + +V
Sbjct: 50 KDSKDNEQTFASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTK--KSLCYAYVN 107
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT-NLFMKNLDSDVTEE 205
++ E A A++ L + K+ + + D PS K T N+F+KNL D+ +
Sbjct: 108 YQKREEAEHALDTLAFCDIKGKQCRI--MWSQRD---PSMRKKGTGNVFIKNLHPDIDNK 162
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265
L + FS FGKI S IA DE+G S+GFGFV++D+ + A+ A+E +NG ++ + +Y A
Sbjct: 163 TLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVA- 221
Query: 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
I R E K +E I + +NVYVKN ++T+++L+ F G +TS +
Sbjct: 222 -------PHIPRKDRESKMQEMIKNF--TNVYVKNFGPEMTEDQLREMFEAYGKVTSTYL 272
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH-RKPLYVAIAQRKEDRQAHLQLQYA 384
D +G +GFGFV F EA+KAV+ + L + LYV AQ+K +R+ L+ Q+
Sbjct: 273 PTDNEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRAQKKREREESLRKQWQ 332
Query: 385 Q 385
Q
Sbjct: 333 Q 333
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/405 (46%), Positives = 288/405 (71%), Gaps = 6/405 (1%)
Query: 4 VPPT--ATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
VPP A+TP ASLYVG+L VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+
Sbjct: 45 VPPASGASTPSASLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNY 104
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
L+ D RA+E N++ + + RI WS RDP RK+G N+F+KNL E ID+ L + F
Sbjct: 105 LNAADGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTF 164
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
FGN++SCKVAT E+G+S+G GFV ++T E+A+ AI+ +NG + DK+++VG +I K +
Sbjct: 165 AAFGNVLSCKVATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKE 224
Query: 181 RV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
R + +++TNL++KNLD++VT++ + F+KFG++ S ++ +DE G S+GFGFVNF
Sbjct: 225 RQAHIDEQKSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNF 284
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
+ + A+ A++A++ + + K L+ RAQKKAERE+ LR +E+ + E++ KY+G+N+Y+
Sbjct: 285 KDHESAQAAVDALHDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYI 344
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM 358
KN++DD+ D++L+A F GTITS K+MRDEKG +KGFGFVC+SSPEEA+KAV + M
Sbjct: 345 KNLEDDMDDDKLRAEFEPFGTITSCKIMRDEKGTSKGFGFVCYSSPEEATKAVAEMNNKM 404
Query: 359 LHRKPLYVAIAQRKEDRQAHLQLQY-AQHMAGIEGSSANVIPSGY 402
L KPLYV+ AQR+E R+ L+ Q A++ ++ ++A IP+ Y
Sbjct: 405 LGSKPLYVSPAQRREVRRQQLESQIAARNNFRMQQAAAAGIPNAY 449
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%)
Query: 533 PDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPES 592
P + LAA +P Q+KQ+LGE LY + + +L KITGMLLEM++ EL+ LL+S E+
Sbjct: 617 PQITPQALAAATPMQRKQLLGEALYMKIVLMEEELAGKITGMLLEMEDDELMGLLDSQEA 676
Query: 593 LAVKVEEAVQVLKLSEAKVSTQEA 616
L KV EA+ VL K S Q A
Sbjct: 677 LTGKVNEAIAVLNDFAVKESVQAA 700
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 239/618 (38%), Positives = 349/618 (56%), Gaps = 72/618 (11%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
A + ASLYVG+L+ V + LF+ FS ++S+RVC+D+ + +S Y YVN+ D
Sbjct: 47 VAESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDG 106
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AIE N++ + G+ RI WS RDP AR+SG N+F+KNL +IDN L + F FG I
Sbjct: 107 EKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKI 166
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLP 184
+SCKVAT + G+SK GFV +ET E+A AAIEN+NG + D+ ++VG+ I K DR
Sbjct: 167 LSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFE 226
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A +TN+++KN+D + +EE L + F+ +G I S+ + +D G S+GFGFVN++ + A
Sbjct: 227 EIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAA 286
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+A+E +N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N+++KN+DD
Sbjct: 287 VKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDT 346
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ E+L+ F GTITSA+VM DE G +KGFGFVCFSSPEEA+KA+ + M KPL
Sbjct: 347 IDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPL 406
Query: 365 YVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQV 417
YVA+AQRK+ R++ L Q+Q M ++ IP + P ++Y PP
Sbjct: 407 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQGFFPPNGRGNA 466
Query: 418 P---PRPGLMY---QPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNML 471
P P P ++ QP G W RP P+PV +
Sbjct: 467 PFPGPNPQMIMRRGQPFGGPEQW--------PRPGPNGQPVPVY-------------GIP 505
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
PQ + + Q+ + QQ+G Y PN R NKG R
Sbjct: 506 PQAYSDFNGQNIR----------QQRG----YYPN---RNQNKG---------------R 533
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLL 587
+ L ++A+ P+QQK+ILGE LYP + + +P+ KITGM+L++DN E+L LL
Sbjct: 534 QQRDLAAIIASAPPDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALL 593
Query: 588 ESPESLAVKVEEAVQVLK 605
E E E+A+ +
Sbjct: 594 EDDELFTNHFEDALTAFE 611
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/380 (50%), Positives = 268/380 (70%), Gaps = 2/380 (0%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P TT SLYVGDL +VTD +L++ FS+ + SVRVC+D + RS Y YVN+ +P D
Sbjct: 118 PLPTT--SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMD 175
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA+E N L+ K +R+ +S RDP +R+SG AN+F+KNL ++IDN L + F FG
Sbjct: 176 AARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGA 235
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCKVA + G+SKG GFVQ+E EESA +A+++LNG + DK +YVG F++K +R S
Sbjct: 236 ILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSS 295
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
AK+ N+F+KNL T+E L++ FS++G I S ++ +G SR FGFVNF++PDDA
Sbjct: 296 DKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAA 355
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
RA+E +NG I K Y RAQKK+ERE L+ +FE+ K+ KY+G N+Y+KN+DD +
Sbjct: 356 RAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 415
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
TD++L+ FS G ITS K+MRD+ G++KG GFV FS+ EEAS+A+ +G M+ KPLY
Sbjct: 416 TDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLY 475
Query: 366 VAIAQRKEDRQAHLQLQYAQ 385
VA AQRKE+R+A LQ Q++Q
Sbjct: 476 VAFAQRKEERKAMLQAQFSQ 495
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 160/289 (55%), Gaps = 17/289 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++++ +L + + L D FS F ++ S +V D G+S +G+V + A A++
Sbjct: 210 ANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDI-GQSKGFGFVQYEKEESAQSAMK 268
Query: 72 VKNHTQLHGKMLRISWSCR----DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
N ++ K + + R D + K+ N+FVKNL ES L ++F +G I
Sbjct: 269 SLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTIT 328
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR------ 181
S V DGKS+ GFV FE+ + A A+E LNG + DK YVGR KKS+R
Sbjct: 329 SAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKR 388
Query: 182 ----VLPSPAAKYT--NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF 235
+ A KY NL++KNLD +T++ L E FS FGKI S I RD+NG S+G GF
Sbjct: 389 RFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGF 448
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKR 284
V+F ++A +AL MNG +I K LY A AQ+K ER+ +L+ QF + R
Sbjct: 449 VSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEERKAMLQAQFSQMR 497
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 159/290 (54%), Gaps = 17/290 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFETEESANAAI 157
+L+V +L ++ + +L E+F G ++S +V + + S G+ +V + A A+
Sbjct: 121 TTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAM 180
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + +K I V S+R S + N+F+KNLD + + L + FS FG I
Sbjct: 181 EALNFAPLNNKPIRV----MYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAI 236
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A D+ G S+GFGFV ++ + A+ A++++NG +I K +Y +K ER+
Sbjct: 237 LSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSD 296
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
K K +NV+VKN+ + T E+L FS+ GTITSA VM G ++ FG
Sbjct: 297 ------------KAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFG 344
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHM 387
FV F SP++A++AV +G ++ K YV AQ+K +R+ L+ ++ Q M
Sbjct: 345 FVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSM 394
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/381 (49%), Positives = 272/381 (71%), Gaps = 3/381 (0%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TAT+ ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+ D
Sbjct: 38 TATS-ASLYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADG 96
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
RA+E N++ + + RI WS RDP RK+G N+F+KNL E IDN L + F FGN+
Sbjct: 97 ERALEQLNYSSIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNV 156
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LP 184
+SCKVAT E G SKG+GFV +ET E+A AI+++NG + DK++YVG I + +R +
Sbjct: 157 LSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGPHISRKERQSKID 216
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A +TNL++KN+D +VT+E F ++G++ S L+ RD+ G + GFGFVNF+ ++A
Sbjct: 217 EMRAHFTNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEA 276
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
++A++A++ S + LY ARAQKKAERE LR Q+++ R+ER+ KY+G N+Y+KN++DD
Sbjct: 277 QKAVDALHESDFHGRKLYVARAQKKAEREAELRKQYDQARQERMNKYQGVNLYIKNLEDD 336
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
V DE+L+A F GTITS +VMRDE+G +KGFGFVC+S+P+EA+KAV + M+ KPL
Sbjct: 337 VDDEKLRAEFEPFGTITSCRVMRDERGKSKGFGFVCYSAPDEATKAVAEMNNKMIGSKPL 396
Query: 365 YVAIAQRKEDRQAHLQLQYAQ 385
YV++AQRKE R+ L+ Q AQ
Sbjct: 397 YVSLAQRKEIRRQQLESQIAQ 417
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 239/595 (40%), Positives = 324/595 (54%), Gaps = 88/595 (14%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RK
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKX---------------------------------X 97
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 98 XXXXXXXSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 157
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA+
Sbjct: 158 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQXXXX 217
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 218 XMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 277
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 278 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 336
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 337 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 394
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W A G RP FQ P + P
Sbjct: 395 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPA-------------A 426
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGR--IRELNKGSGVSLGTFNSGGVM 529
P+ M+ +S + Q KY R + LN V++ + V
Sbjct: 427 PRPPFSTMRPASSQVPRXXXXXAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQ-PAVHVQ 485
Query: 530 ARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELL 584
++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL
Sbjct: 486 GQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELL 539
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 119/247 (48%), Gaps = 47/247 (19%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P+ +L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSK---VLYAAR-------------------------AQKKAER--- 272
A RAL+ MN VI K ++++ R Q+ AER
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKXXXXXXXXXSKGYGFVHFETQEAAERAIE 124
Query: 273 ---------EQILRHQFEEKRKERILKYKG-----SNVYVKNIDDDVTDEELKAHFSQCG 318
++ +F+ RKER + +NVY+KN +D+ DE LK F + G
Sbjct: 125 KMNGMLLNDRKVFVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 183
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
S KVM DE G +KGFGFV F E+A +G L+ K +YV AQ+K +RQ
Sbjct: 184 PALSVKVMTDESGKSKGFGFVSFERHEDAQXXXXXMNGKELNGKQIYVGRAQKKVERQTE 243
Query: 379 LQLQYAQ 385
L+ ++ Q
Sbjct: 244 LKRKFEQ 250
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/415 (47%), Positives = 281/415 (67%), Gaps = 10/415 (2%)
Query: 6 PTATTP----ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
P A P +SLYVGDL VT+ +L++ FS + S+RVC+D T RS Y YVNF
Sbjct: 27 PAAQQPGAGTSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQ 86
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
SP+DA AI+V N ++GK +R+ +S RDP R+SGV N+F+KNL ++IDN L + F
Sbjct: 87 SPNDAAHAIDVLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFA 146
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FG I S KVA G SKG+GFVQFET+E+A AAI+N+NG + DK++YVG F ++++R
Sbjct: 147 QFGTITSAKVAMDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYVGPFQRRAER 206
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ AK+ N+++KNL ++++E L EKF++ G + S +I RDE G S+GFGFV ++ P
Sbjct: 207 S-NTGEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEP 265
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+ A A+E ++G K RAQKKAERE L+ +F+++R+ER+ K G+N+Y+KN+
Sbjct: 266 EGAAAAVEKLDGYTEDEKTWVVCRAQKKAEREAELKAKFDQERRERMEKMAGANLYIKNL 325
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
+D DE+L+ F + GTITS +VMRD G+++G FV FSSP+EA++AV +G M+
Sbjct: 326 EDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPDEATRAVTEMNGKMVGA 385
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHM--AGIEGSSANVI-PSGYPS--LYYTTPP 411
KPLYVA+AQRKE+R+ LQ Q+AQ M AG+ G A + P G P +YY PP
Sbjct: 386 KPLYVALAQRKEERRMRLQAQFAQRMPGAGMPGGMAPYMPPPGVPGAPMYYGQPP 440
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 53/71 (74%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
+L L+A +P+QQ+ ILGE LYPL+E AKITGMLLEMD SE+L L+ESP++L
Sbjct: 495 ILASQLSAAAPDQQRMILGEALYPLIESKDAANAAKITGMLLEMDQSEVLHLIESPDALT 554
Query: 595 VKVEEAVQVLK 605
KV+EA+ VLK
Sbjct: 555 SKVQEALAVLK 565
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/399 (49%), Positives = 277/399 (69%), Gaps = 5/399 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYY 407
QRKE+R+A L QY Q ++ + S ++ S PS Y+
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF 407
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/402 (48%), Positives = 278/402 (69%), Gaps = 13/402 (3%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+ D RA+E
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDN-VR---------LQEMFQNF 123
N++ + G+ RI WS RDP RK+G N+F+KNL E IDN VR L + F F
Sbjct: 106 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDELIDNKVRTAQKTPPHALHDTFAAF 165
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GN++SCKVAT E G+S+G+G+V +ET E+A +AI+ +NG + DK++YVG I + +R
Sbjct: 166 GNVLSCKVATDEQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGYHISRKERQS 225
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L A +TNL++KNLD +VT++ VE FS+FG + S +I DE G S+GFGFVNF+N
Sbjct: 226 KLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENH 285
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+ A +A++ ++ + K L+ +RAQKKAERE+ LR +E + E++ KY+G N+Y+KN+
Sbjct: 286 EQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVNLYIKNL 345
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
+DDV DE+L+A F GTITS KVMRD+KG +KGFGFVCFSSP+EA+KAV + M+
Sbjct: 346 EDDVDDEKLRAEFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGS 405
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQ-HMAGIEGSSANVIPSGY 402
KPLYV++AQR+E R+ L+ Q AQ + ++ ++A +P GY
Sbjct: 406 KPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGLPGGY 447
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 53/78 (67%)
Query: 533 PDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPES 592
P + L+ SP +QKQ+LGE +Y + +P+L KITGMLLEM+N+EL+ LLE+P++
Sbjct: 591 PGLNTNALSTASPMEQKQMLGEIIYMKIVAEQPELAGKITGMLLEMENAELIHLLETPQA 650
Query: 593 LAVKVEEAVQVLKLSEAK 610
+ KV EA+ VL AK
Sbjct: 651 MDAKVNEALAVLHEFAAK 668
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/376 (49%), Positives = 264/376 (70%), Gaps = 2/376 (0%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+ D RA++
Sbjct: 48 SLYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQ 107
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N++ + + RI WS RDP RK+G N+F+KNL E IDN L + F FGN++SCKVA
Sbjct: 108 LNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVA 167
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKY 190
T E G SKG+GFV +ET E+A AI+++NG + DK+++VG I + +R + A+Y
Sbjct: 168 TDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEMKAQY 227
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN+++KNLD ++ +E E F KFG I S +++DE G SRGFGFVNF++ + A A+E
Sbjct: 228 TNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVET 287
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++ + I + LY ARAQKK+ERE LR +E ++E++ KY+G N+Y+KN++DD+ DE+L
Sbjct: 288 LHDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKL 347
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+A F GTITS KVMRDEK +KGFGFVCFSSP+EA+KAV+ + M+ KPLYV++AQ
Sbjct: 348 RAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLAQ 407
Query: 371 RKEDRQAHLQLQYAQH 386
R+E R+ L+ Q AQ
Sbjct: 408 RREVRRQQLETQIAQR 423
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%)
Query: 542 APSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAV 601
A SP +QKQ++GE +Y + +P+L KITGMLLEMDN L+ LLE+ E+L KV+EA+
Sbjct: 595 ASSPMEQKQVIGEMIYMKIYSTQPELAGKITGMLLEMDNQALIQLLENNEALTGKVDEAI 654
Query: 602 QVL 604
VL
Sbjct: 655 AVL 657
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 243/654 (37%), Positives = 353/654 (53%), Gaps = 78/654 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL P+VT+ L++ F+ +AS+RVC+DS T +S Y YVN+ + +DA RA+E
Sbjct: 41 ASLYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNVNDARRALE 100
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+ ++ GK +RI WS RDP RKSG N+F+KN+ ESID L + F +G I+SCKV
Sbjct: 101 ALKYNEICGKQVRIMWSHRDPSLRKSGAGNVFIKNIDESIDTKALYDAFSPYGQILSCKV 160
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA---- 187
AT E G+S+G+GFV F+TE +A AI + NG +G+K+I+V F+++S+RV +
Sbjct: 161 ATDETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFVAPFVRRSERVSSTKLEDGV 220
Query: 188 -AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
K+TNL+++N + EE L E FS FG+I S+++ D G R F F+N+ A+
Sbjct: 221 DEKFTNLYVRNFPENWNEEILKENFSPFGEITSMMMKSDPLG--RKFAFINYAENSMAKA 278
Query: 247 ALEAMNG-----------SVIG-------SKVLYAARAQKKAEREQILRHQFEEKRKERI 288
A+E MNG ++ G +K+L A Q +A R +L+ +++ E
Sbjct: 279 AIETMNGKDFSIKSGDKSTIEGEDTDKSETKLLVCAH-QDRARRHAMLKAKYDSMHAENK 337
Query: 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEAS 348
KY+G N+Y+KN+DD + D EL+ F G ITS KVM DE G + GFGFVCF SPE+A+
Sbjct: 338 SKYQGVNLYIKNLDDSINDAELRELFEGFGLITSCKVMVDEHGASLGFGFVCFVSPEDAT 397
Query: 349 KAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYT 408
AV+ H ++H KPLYV +A+++E R LQ++Y G + + +P G +
Sbjct: 398 HAVSEMHLKLVHNKPLYVGLAEKREQRLNRLQMRYKV------GHNRDGMPMGMLPPHGM 451
Query: 409 TPPGI--VSQVPPRPGLMY------------QPLGLRTGWRANGF--VPPTRPAFQVS-- 450
PP V +P MY Q + WR +PP QV
Sbjct: 452 MPPMHMGVPMMPVNGQYMYPNPNIHGPNSSQQNAMMPYQWRHQYHPGIPPV--GMQVPFN 509
Query: 451 ------PLPV---NPKHNRQNRGR--------MNGNMLPQVGAHYMQQSSQ--SAASSKD 491
P+P+ NP NR RG+ NG+ G + Q+ S
Sbjct: 510 ARGANMPVPMRVYNPMGNRGVRGQNVPVQKLGQNGDKAMGDGFKFTPQARNRMEMVQSDH 569
Query: 492 SSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQI 551
S G + G + TF + A LAA P QKQ+
Sbjct: 570 SDPATAGNARAHARATATTSAVPGRDSNDTTFQEAHITA-------ATLAAAHPNMQKQM 622
Query: 552 LGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
LGE+L+P++ +H P+L K+TGM+LEMDNSELL+LLES + L K +EA++VL+
Sbjct: 623 LGEKLFPIIARHNPELAGKVTGMMLEMDNSELLILLESEKQLIAKADEAIRVLQ 676
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 232/614 (37%), Positives = 340/614 (55%), Gaps = 51/614 (8%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
+ T ASLYVG+L P + + LF+ FS ++S+RVC+D+ T RS Y YVN+ + D
Sbjct: 55 VSETTASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDG 114
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI+ N++ + G+ +RI WS RDP R++G N+F+KNL +IDN L + F FG I
Sbjct: 115 EKAIDELNYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRI 174
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LP 184
+SCKVAT G+SKG GFV FE+ E+A AAIEN+NG + + +YVG + + DR L
Sbjct: 175 LSCKVATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKLE 234
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+TN+++KN+D + +EE + E F+ FG + S + +D G SRGF FVN++ + A
Sbjct: 235 EVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAA 294
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+++E++N K LY RAQKK+ER + L+ Q+E R E++ K +G N++VKN+DD
Sbjct: 295 VKSIESLNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDS 354
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ DE+LK F GTI+S KVM DE G +KGFGFV FSSPEEAS+A++ + +ML KPL
Sbjct: 355 IDDEKLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPL 414
Query: 365 YVAIAQRKEDRQAHLQLQYA-------QHMAGIEGSSANVIPSGYPSLYYTT----PPGI 413
YVA+AQRK+ R++ L+ Q Q A G IP+ P +Y PPG
Sbjct: 415 YVALAQRKDVRRSQLEQQIQARNQLRLQQAAAAGGLPGQFIPT--PFIYGQQPQFLPPGA 472
Query: 414 VSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ 473
+P +P L+ +P G P V P P + LPQ
Sbjct: 473 RGPLPNQPFLIPRP--------GQGLPPQAAGGQWVGGRPGQPAYG-----------LPQ 513
Query: 474 VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP 533
+ Q + + + +GG+ PN + N G +G V
Sbjct: 514 EFQQFPQGGRGGFRGGRGNGPRNQGGRGP-APNAAPIDPNAQPG-------AGNVA---- 561
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLES 589
L +L EQQK++LGE LY + + P+ KITGM+L+++N E+L LLE+
Sbjct: 562 -QLASILPNVPVEQQKRLLGEELYQRIVSTGKAQDPESAGKITGMMLDLENQEILSLLEN 620
Query: 590 PESLAVKVEEAVQV 603
E ++A Q
Sbjct: 621 EELFKQHFDDAFQA 634
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/382 (51%), Positives = 262/382 (68%), Gaps = 3/382 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DV + LFD FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP R+SGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
AT E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 122 ATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D +E L E F +GKI S + E+G S+GFGFV F+ + A A++
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G K LY ARAQKKAER+Q L+ +FEE +++R G N+YVKN+DD + D+
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDD 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS G ITSAKVM DE+G +KGFGFVCF++P EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLRVAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQYAQHMAGI 390
AQRKE+R+AHL QY +HM G+
Sbjct: 362 AQRKEERKAHLASQYMRHMTGM 383
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 55/72 (76%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
++ +LA P++QKQILGERLYP++E +L KITGMLLE++NSELL ++E E+L
Sbjct: 555 LIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALK 614
Query: 595 VKVEEAVQVLKL 606
KVEEAV VL++
Sbjct: 615 AKVEEAVAVLQV 626
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/391 (49%), Positives = 265/391 (67%), Gaps = 4/391 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ LF+ FS + S+RVC+D+ T RS Y YVNF P DA RA++
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++GK +RI WS RDP R+SG N+F+KNL +SIDN + + F FGNI+SCKV
Sbjct: 78 TMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 137
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E+ SKG+GFV FETEESA AIE +NG + K++YVG+F + R+ + +
Sbjct: 138 ANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMARLREMGETTRR 197
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L + F KFGKI S + D +G S+GFGFV F+NP+DA +A+
Sbjct: 198 FTNVYIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVT 257
Query: 250 AMNGSVI--GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
M+ + + LY RAQKK ER L+ ++E+++ ER+ +Y+G N+YVKN+DD V D
Sbjct: 258 EMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVND 317
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
+ LK +F G ITSAKVM D+ G +KGFGFVCF P+EA+KAV +G M+ KPLYVA
Sbjct: 318 DILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 377
Query: 368 IAQRKEDRQAHLQLQYAQHMAGIEGSSANVI 398
+AQRKEDR+A L QY Q +A I +A +
Sbjct: 378 LAQRKEDRKAQLASQYMQRLASIRMHNAGTM 408
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P+ +L++ +L DVTE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 12 TPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPAD 71
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN ++ K + +I+ Q R + + N+++KN+D
Sbjct: 72 AERALDTMNFDMMYGKPI------------RIMWSQ----RDPSMRRSGAGNIFIKNLDK 115
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ + FS G I S KV DE+ +KG+GFV F + E A KA+ +G +L K
Sbjct: 116 SIDNKAIYDTFSMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKK 175
Query: 364 LYVAIAQ 370
+YV Q
Sbjct: 176 VYVGKFQ 182
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/388 (48%), Positives = 257/388 (66%), Gaps = 1/388 (0%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDLHP T+ L+ FSE ++ S R+C+D T S YGYVNF P DA RA+E
Sbjct: 2 SLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALEN 61
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+ G+ +RI WS RDP RKSG N+F+KNL ++ID +L + F G I+SCK+A
Sbjct: 62 LNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIGKILSCKIA 121
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
E G SKG+GFV FE EE A AIE +NG + D+ +YVG+FI SDR S ++ N
Sbjct: 122 MDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKSASGKLRFNN 181
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KN D T+E L + FS+FG+I S + ++ G S+GFGFV F +PD A +A+ M+
Sbjct: 182 IYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVMH 241
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKY-KGSNVYVKNIDDDVTDEELK 311
G I + LYA+RAQ+K ER++ L+ + E++R ER+ KY G N+YVKN+DD++ DE LK
Sbjct: 242 GKEINGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERLK 301
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS G ITSAKVM D G +KGFGFVCF+ PE+A++AV + ++ KPLYVA+AQR
Sbjct: 302 EAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQR 361
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVIP 399
KEDR+A L ++ Q +A ++P
Sbjct: 362 KEDRRAKLIAEHQQRLAQYRSPVTQMLP 389
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 19/189 (10%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +L TE L KFS+ G + S I RD S G+G+VNF+ P DA RALE
Sbjct: 1 TSLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALE 60
Query: 250 AMN-GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+N S +G + +I+ Q R + K N+++KN+D + +
Sbjct: 61 NLNYESFMGRPI-------------RIMWSQ----RDPSLRKSGKGNIFIKNLDKTIDQK 103
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+L FS G I S K+ DE G +KG+GFV F E A +A+ +G M++ + +YV
Sbjct: 104 QLYDTFSFIGKILSCKIAMDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGK 163
Query: 369 AQRKEDRQA 377
DR++
Sbjct: 164 FIPSSDRKS 172
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
LA S E QK+ LGERL+PLV++ P L K+TGMLL +DN+E++ LLES ESL K+EE
Sbjct: 613 LAQLSEEDQKRTLGERLFPLVQEMYPTLAQKLTGMLLGVDNAEVIHLLESKESLRAKLEE 672
Query: 600 AVQVLKLS 607
+ VLK S
Sbjct: 673 GISVLKTS 680
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/465 (43%), Positives = 294/465 (63%), Gaps = 9/465 (1%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDLHPD+ D +L FSE +A VC+D T+ +S YGYVNF P DA RA+E
Sbjct: 3 SLYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALEQ 62
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+ + G+ +RI WS RDP RKSG+ N+F+KNL ++I+ L + F FG I+SCK+A
Sbjct: 63 MNYEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGRILSCKIA 122
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
E+G SKG+GFV FE EE A AI+ +N ++ K +YVG FI +SDR + K+ N
Sbjct: 123 MDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQNRKQKFNN 182
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KN + +E L E F++FG+I S + +D G S+GFGFV + NP+ A A+ AM+
Sbjct: 183 IYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAMH 242
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS-NVYVKNIDDDVTDEELK 311
G IG + LYA+RAQ+K ER++ L+ + E+++ ER KY + N+YVKN+DD++ DE LK
Sbjct: 243 GKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERLK 302
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS+ G I+SAKVM D +KGFGFVCF++PE+A+KAV +G + + KPLYVAIAQR
Sbjct: 303 EIFSKYGPISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQR 362
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPLGL 430
KEDR+A L ++ QH+ + ++ +IP+ +P+ Y P +++ PG + Q
Sbjct: 363 KEDRRAELAAKHTQHLNALRSTAPPMIPALMHPTQNYFHPYPQQARLYSAPGQLMQ---A 419
Query: 431 RTGWRANGFVPPTRPAFQVSPLPV----NPKHNRQNRGRMNGNML 471
+ W NG + +S P+ NP H +MN N +
Sbjct: 420 QPRWSRNGPLAADLSQLAMSRPPLSNYPNPNHAVAMAPQMNMNQM 464
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 17/189 (8%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +L D+ ++ L KFS+ G +A + RD + S G+G+VNF++P DA RALE
Sbjct: 2 TSLYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALE 61
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MN V+ + + +Q R + K N+++KN+ + +E
Sbjct: 62 QMNYEVVMGRPIRIMWSQ----------------RDPSLRKSGLGNIFIKNLAKTIEQKE 105
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S K+ DE G +KG+GFV F + E A +A+ + + K +YV
Sbjct: 106 LYDTFSLFGRILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNF 165
Query: 370 QRKEDRQAH 378
+ DR++
Sbjct: 166 IPRSDRKSQ 174
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 538 GMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
G LA S + QK+ LGE+L+PL+ + P L K+TGMLL +D E++ +LES ++L K+
Sbjct: 596 GELARLSEDDQKRALGEKLFPLIREQYPQLAHKLTGMLLGLDIPEVIHMLESKDTLQEKL 655
Query: 598 EEAVQVLK 605
+E + VL+
Sbjct: 656 QEGINVLR 663
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/382 (50%), Positives = 264/382 (69%), Gaps = 5/382 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN + + F FG+I+SCKV
Sbjct: 71 SMNFDVIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+GFV F TEE+AN +IE +NG + K++YVG+F+ + +R + K
Sbjct: 131 VCDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQQKK 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRAL 248
+TN+F+KN ++ +E L E F ++GKI S + +D+ +G ++GFGFV F++P DA A
Sbjct: 190 FTNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENAC 249
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ +N I ++LY RAQKK ER+ LR++FE + ER +Y+G N+YVKN+DD + DE
Sbjct: 250 DDLNMKDINGRILYVGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVKNLDDSLDDE 309
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+
Sbjct: 310 RLRKEFMPFGTITSAKVM-SEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 368
Query: 369 AQRKEDRQAHLQLQYAQHMAGI 390
AQRKEDR+AHL Q+ Q M+G+
Sbjct: 369 AQRKEDRKAHLASQFMQRMSGL 390
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 18/191 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L +DVTE L EKFS G I S+ + RD S G+ +VNF P DA
Sbjct: 6 PSYPMASLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL++MN VI + + +Q R+ LR K NV++KN+D
Sbjct: 66 ERALDSMNFDVIKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDKS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ + FS G I S KV+ DE G +KG+GFV F++ E A+K++ +G +L+ K +
Sbjct: 110 IDNKAMYDTFSAFGDILSCKVVCDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKV 168
Query: 365 YVAIAQRKEDR 375
YV +++R
Sbjct: 169 YVGKFMSRKER 179
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 237/585 (40%), Positives = 339/585 (57%), Gaps = 70/585 (11%)
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGN
Sbjct: 155 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 214
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L
Sbjct: 215 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 273
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
+ A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +D
Sbjct: 274 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 333
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD
Sbjct: 334 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 393
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ DE L+ FS GTITSAK + EEA+KAV +G ++ KP
Sbjct: 394 GIDDERLRKEFSPFGTITSAK------------------NSEEATKAVTEMNGRIVATKP 435
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLY 406
LYVA+AQRKE+RQAHL QY Q MA + VI PSGY + Y
Sbjct: 436 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 495
Query: 407 YTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGR 465
Y PP ++Q+ P P W A G RP FQ P + P R
Sbjct: 496 Y--PPSQIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFST 538
Query: 466 MN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELN 513
M + +P+V + S+Q+ ++ + VP + + LN
Sbjct: 539 MRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLN 598
Query: 514 KGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITG 573
V++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITG
Sbjct: 599 TQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITG 656
Query: 574 MLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
MLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 657 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 701
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 152/289 (52%), Gaps = 38/289 (13%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 190 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 247
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG
Sbjct: 248 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 307
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 308 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 367
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ +Y NL++KNLD + +E L ++FS FG I S
Sbjct: 368 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA-------------- 413
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
N ++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 414 ----KNSEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 458
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 282 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 340
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 341 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 399
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S K E A A+ +NG V K +YV
Sbjct: 400 LRKEFSPFGTITSAK------------------NSEEATKAVTEMNGRIVATKPLYVALA 441
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 442 QRKEER-----QAHLTNQYMQRMAS 461
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 239/597 (40%), Positives = 338/597 (56%), Gaps = 32/597 (5%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL P+VT+ L FS + +V +C+ S TGRS CYGYVNF P+DA +A+
Sbjct: 20 SLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSN 79
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
NHT L GK++RI W R+P ARKSG+ NL+VKNL SID+ LQ +F FG I+SCKV
Sbjct: 80 LNHTYLKGKLMRIMWCQRNPCARKSGIGNLYVKNLDASIDSAGLQSLFSKFGTILSCKV- 138
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP--AAKY 190
E GKSKG+GFVQF++E+SA AA L+ T + +K++YV RF+KKS+R + K+
Sbjct: 139 VEEHGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFVKKSERTTATSYDELKF 198
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL++KNL D+T++ FS FG+I S +I +D NG SRGFGFV+F++P+DA++A++A
Sbjct: 199 TNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDA 258
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+NG + S+ L+ RAQ KAER++IL+H++++ + K+K SN+YVKN+ + +++L
Sbjct: 259 LNGYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDNDKL 318
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ FS G I SAKVMR + G ++GFGFVCFSSPEEA KA+N +G + K LYVA+AQ
Sbjct: 319 QELFSCSGKIVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQ 378
Query: 371 RKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGYPSLYYTTPPGIVSQVP-PRPGLMYQPL 428
K DRQ LQ ++ + S ++V+P +YY P QVP Y L
Sbjct: 379 CKRDRQLALQTYFSVPQSQPPYLSDSSVVPPPISPVYYNFYP-YSQQVPFLNRTFSYHNL 437
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
G G++ F +PV + Q QS Q A
Sbjct: 438 GANMGFQHPYAAQSYHQHFSAY-IPVAE--------------MDQDSQKTTDQSFQMTAM 482
Query: 489 SKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQ 548
+ N + P +I K S +G +G + R +LA
Sbjct: 483 KHATFNLSDQNMNHRHPGFQIIRYTKSSPNKVGA--AGNNLKR-------LLATQKTSGN 533
Query: 549 KQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
+ + L+P VE +PDL ML EM NS +L P +V + V +LK
Sbjct: 534 PKKVTGNLHPHVENFQPDLSGNNGRMLSEMINSPSSSVL--PAHRTARVLKEVNILK 588
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 18/194 (9%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNP 241
LP +L++ +LD +VTE +L FS G I ++ + R G S +G+VNF P
Sbjct: 11 LPGDPRPRLSLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRP 70
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
DA +AL +N + + K++ Q+ RK I N+YVKN+
Sbjct: 71 YDAYKALSNLNHTYLKGKLMRIMWCQRNP-----------CARKSGI-----GNLYVKNL 114
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
D + L++ FS+ GTI S KV+ +E G +KG+GFV F S + A A H ML
Sbjct: 115 DASIDSAGLQSLFSKFGTILSCKVV-EEHGKSKGYGFVQFDSEDSALAARTALHDTMLKE 173
Query: 362 KPLYVAIAQRKEDR 375
K LYV+ +K +R
Sbjct: 174 KKLYVSRFVKKSER 187
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 207/441 (46%), Positives = 280/441 (63%), Gaps = 36/441 (8%)
Query: 28 LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87
L++ FS + S+RVC+D T RS Y YVNF P DA RA++ N + GK +RI W
Sbjct: 2 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQF 147
S RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV E+G SKG+GFV F
Sbjct: 62 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 120
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEE 205
ET+E+A AIE +NG + D++++VGRF + +R L + A ++TN+++KN D+ +E
Sbjct: 121 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDE 180
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265
L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++ MNG + K +Y R
Sbjct: 181 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 240
Query: 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
AQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE L+ FS GTITSAKV
Sbjct: 241 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 300
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
M E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q
Sbjct: 301 MM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 359
Query: 386 HMAGIEGSSANVI-------PSGY----------PSLYYTTPPGIVSQVPPRPGLMYQPL 428
MA + VI PSGY + YY PP ++Q+ P P
Sbjct: 360 RMASVRAVPNPVINPYQPAPPSGYFIAAIPQTQNRAAYY--PPSQIAQLRPSP------- 410
Query: 429 GLRTGWRANGFVPPTRPAFQV 449
W A G P PA V
Sbjct: 411 ----RWTAQGARP--HPAVHV 425
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D +G+S +G+V+F DA +A++
Sbjct: 167 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 225
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 226 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 284
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 285 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 343
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 344 QRKEER-----QAHLTNQYMQRMAS 363
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 64/80 (80%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 435 MLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVD 494
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV VL+ +AK + Q+A++
Sbjct: 495 EAVAVLQAHQAKEAAQKAVN 514
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 254/680 (37%), Positives = 357/680 (52%), Gaps = 94/680 (13%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ ++AS+RVC+D+ T RS Y YVN+ S D
Sbjct: 49 PHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPD 108
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 109 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 168
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K DR
Sbjct: 169 ILSCKVAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 228
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A +TN+++KN+ DVT++ F G + S IARD +G SRGFGFVNF +
Sbjct: 229 EEMKANFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEA 288
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A A+E +N + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+DD
Sbjct: 289 ASAAVEELNNKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDD 348
Query: 304 DVTDEELKAHFSQCGTITSAKVMR-------DEKG------------------------- 331
DV DE+L+ F++ G ITSAKVMR DE+G
Sbjct: 349 DVDDEKLRTMFTEFGPITSAKVMRDSPSDDEDEEGKEAEAEDKDKENKKADAEAEAAEAA 408
Query: 332 -------------------INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
+KGFGFVCFS+P++A+KAV + M++ KPLYVA+AQRK
Sbjct: 409 EEENSDKEKKERKGSKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRK 468
Query: 373 EDR----QAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYT-TPPGIVSQ----VP-PRPG 422
+ R +A +Q + M ++ P P ++Y PG V Q +P P+PG
Sbjct: 469 DVRKSQLEASIQARNQMRMQQAAAAAGMSQPFMQPPVFYAGQQPGFVPQGGRGIPFPQPG 528
Query: 423 LMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA------ 476
+ G+ TG R F P + P+ N M PQ G
Sbjct: 529 M-----GM-TGVRPGQF-----PGYPQQGGRGGPQQIPPNMYNMPNQFPPQFGQPGTPQF 577
Query: 477 -HYMQQSSQSAASSKDSSNQQKGGQSK-----YVPNGRIRELNKGSGVSLGTFNSGGVMA 530
MQQ++ + G + PN R + + +G + N+
Sbjct: 578 MAAMQQAALGGGRGGPQGGRGNAGMPPNAVPGFPPNNR-QAMGRGGNRAGNNTNNVNSAN 636
Query: 531 RKP-------DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSEL 583
+P L ++ P QQKQ+LGE ++P ++ +L KITGMLLEMDNSEL
Sbjct: 637 IQPVRASDNGSALQTQISGAPPAQQKQMLGEMIFPKIQAINGELAGKITGMLLEMDNSEL 696
Query: 584 LLLLESPESLAVKVEEAVQV 603
+ L+E +L KV+EA+ V
Sbjct: 697 INLIEDDAALKSKVDEALAV 716
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/382 (52%), Positives = 262/382 (68%), Gaps = 3/382 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+ + LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L K +RI WS RDP R+SG+ N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLLRNKPIRIMWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
AT + G SKG+GFV FETEE+AN AIE +NG + K++YVG+FI + +R L A
Sbjct: 122 ATDDKGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGKFIPRKEREKDLGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN DV +E L E F +GKI S + E+G S+ FGFV F+ + A A+E
Sbjct: 182 FTNVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFVAFETTEAAEAAVE 241
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G K LY ARAQKKAER+Q L+ +FEE +K+R G N+YVKN+DD + DE
Sbjct: 242 ALNGKDMGDGKALYVARAQKKAERQQELKRKFEELKKKRQESVYGVNLYVKNLDDTIDDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS GTITSAKVM DE G +KGFGFVCF +P EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLRKEFSLFGTITSAKVMTDEDGRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQYAQHMAGI 390
AQRKEDR+AHL QY +HMAG+
Sbjct: 362 AQRKEDRKAHLASQYMRHMAGM 383
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 157/289 (54%), Gaps = 16/289 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + I+ L E F N G ++S +V +S G+ +V F+ A A+
Sbjct: 1 MASLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + +K I I S R + N+F+KNLD + + + + FS FG I
Sbjct: 61 DTMNFDLLRNKPIR----IMWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A D+ GTS+G+GFV+F+ + A A+E +NG ++ K +Y + + ERE+ L
Sbjct: 117 LSCKVATDDKGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGKFIPRKEREKDL- 175
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
K ++ +NVYVKN DDV DE+LK F G ITS KVM E G +K FG
Sbjct: 176 -----GEKAKLF----TNVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKCFG 226
Query: 338 FVCFSSPEEASKAVNTFHGY-MLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F + E A AV +G M K LYVA AQ+K +RQ L+ ++ +
Sbjct: 227 FVAFETTEAAEAAVEALNGKDMGDGKALYVARAQKKAERQQELKRKFEE 275
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 58/79 (73%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
+L MLA +P++QKQILGERLYP++E P++ KITGMLLE++NSELL ++E E+L
Sbjct: 574 LLASMLANANPQEQKQILGERLYPIIELAHPNMAGKITGMLLEIENSELLHMIEDQEALK 633
Query: 595 VKVEEAVQVLKLSEAKVST 613
KVEEAV VL + +T
Sbjct: 634 AKVEEAVAVLHMHRVTETT 652
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/382 (50%), Positives = 260/382 (68%), Gaps = 3/382 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DV + LFD FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP R+SGV N+F+KNL +IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
AT E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 122 ATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D +E L E F +GKI S + E+G S+GFGFV F+ + A A++
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G K LY ARAQKKAER+Q L+ +FEE +++R G N+YVKN+DD + D+
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDD 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS G ITSAKVM DE+G +KGFGFVCF++ EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQYAQHMAGI 390
AQRKE+R+AHL QY +HM G+
Sbjct: 362 AQRKEERKAHLASQYMRHMTGM 383
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 233/616 (37%), Positives = 341/616 (55%), Gaps = 71/616 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ F+ + SVRVC+D+ T RS Y YVNF + D IRA+E
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALE 105
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ + + RI WS RDP RK+G N+++KNL +IDN L + F FG I+SCK+
Sbjct: 106 ELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKI 165
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK-- 189
AT E G S+G GFV +E+ ESA +AI+++NG + DK+++VG + KSDR+ K
Sbjct: 166 ATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNS 225
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+F+KNL +++TE E +KFG+ +S+ ++ ++ G GFGFV++ D A +A++
Sbjct: 226 FTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAID 285
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
++ + L+A RA+KK ER LR Q+E R E++ KY+G N+Y+KN+DD + D++
Sbjct: 286 GLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDK 345
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+A F+ GTITSAKVM DE G +KGFGFVC+SSPEEA+KAV + ++ KPLYV +A
Sbjct: 346 LRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLA 405
Query: 370 QRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY---PSLYYTTPPGIVSQVPPRPGLM 424
QRK+ R++ L Q+Q M + ++A +P Y P ++Y PG +PP G M
Sbjct: 406 QRKDVRRSQLQQQIQAKNQMRLQQQAAAGGLPGQYMGNPGVFYPGQPGF---MPPGRGGM 462
Query: 425 YQPLGLR-------TGWRANGFVP---PTRPAFQVSPLPVNPKHNRQN----RGRMNGNM 470
P G N F P P P +P P+ +Q +G M G
Sbjct: 463 --PFGANPQMMMRPPMPPQNQFPPRGVPGGPNMYGAP----PQGYQQGGFPPQGPMRGGQ 516
Query: 471 LPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMA 530
P+ G Q + A KD +
Sbjct: 517 PPRSGQPGPQGQFRGAPRRKDGE------------------------------------S 540
Query: 531 RKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHK-----PDLVAKITGMLLEMDNSELLL 585
R D ++ L EQ KQ++GE LYP V K + KITGMLLEM E+L
Sbjct: 541 RVADSISNALENAPEEQHKQLVGEALYPKVLAEKAIDGNAEFAGKITGMLLEMPIKEILE 600
Query: 586 LLESPESLAVKVEEAV 601
+++ E L ++ +A+
Sbjct: 601 VIDDEEGLQAQINDAI 616
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 19/298 (6%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++Y+ +L P + + L D FS F + S ++ D G S +G+V++ S A
Sbjct: 131 TGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDE-FGNSRGFGFVHYESAESAES 189
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPD------ARKSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + D +K+ N+F+KNL I +E+
Sbjct: 190 AIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNK 249
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FG S ++T+++GK G GFV ++ + A AI+ L+ T +++ GR KK +R
Sbjct: 250 FGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERA 309
Query: 183 LP----------SPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS 230
KY NL++KNLD + ++ L +F+ G I S + DE G S
Sbjct: 310 DELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKS 369
Query: 231 RGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
+GFGFV + +P++A +A+ MN ++ K LY AQ+K R L+ Q + K + R+
Sbjct: 370 KGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQIQAKNQMRL 427
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/426 (48%), Positives = 268/426 (62%), Gaps = 13/426 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVGDLHP+V + LF+ FS +ASVRVC+D T RS Y YVNF S DA RA+E
Sbjct: 77 ATIYVGDLHPEVNEANLFEVFSAIGPVASVRVCRDIVTRRSLGYAYVNFHSMDDAERALE 136
Query: 72 VKNH---TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
N Q K +R+ W RDP RKSG N+F+KNL ++IDN L + F FGNI+S
Sbjct: 137 TMNFYACPQTRDKPMRLMWKNRDPTIRKSGAGNVFIKNLDKAIDNKTLFDTFSVFGNILS 196
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
CKVAT ++G S G+GFV FE E A AI +NG + DK++YVG F + +R
Sbjct: 197 CKVATDDEGNSLGYGFVHFENPEDAETAINKVNGMLLNDKQVYVGYFKSRQEREASEETH 256
Query: 189 KYTNLFMKNL-DSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
+TN++ KNL S TEE + E FS +G+I S+ + DEN +GF FVNF P+ A +A
Sbjct: 257 IFTNVYTKNLIPSMCTEEKIRELFSLYGEITSVYVPVDENEVPKGFAFVNFAKPECAAKA 316
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
+E +NG K LY RAQKKAERE LR + E KR E + KY+G N+YV+N+ DD+ +
Sbjct: 317 VEELNGRDFEGKSLYVGRAQKKAEREAELRRKAENKRAEILKKYQGVNLYVRNLPDDMDE 376
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E L+ FS GT+TS +VMRD+KG+++GFGFVCFS+PEEA+KAV +G M+ +KPLYV
Sbjct: 377 EGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEEATKAVTEMNGKMMGKKPLYVC 436
Query: 368 IAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP--PGIVSQ--VPPRPGL 423
+AQRKE RQA L+ AQ +A G IP P Y P P Q VPP+ L
Sbjct: 437 LAQRKEIRQAQLE---AQRIAAAAGGLR--IPGAVPGSLYPQPGAPMFYPQPGVPPQMQL 491
Query: 424 MYQPLG 429
+G
Sbjct: 492 QTNMMG 497
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 14/194 (7%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDD 243
+P+ +++ +L +V E +L E FS G +AS+ + RD S G+ +VNF + DD
Sbjct: 71 APSVSSATIYVGDLHPEVNEANLFEVFSAIGPVASVRVCRDIVTRRSLGYAYVNFHSMDD 130
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RALE MN YA R++ +R + + R I K NV++KN+D
Sbjct: 131 AERALETMN--------FYAC----PQTRDKPMRLMW-KNRDPTIRKSGAGNVFIKNLDK 177
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L FS G I S KV D++G + G+GFV F +PE+A A+N +G +L+ K
Sbjct: 178 AIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVNGMLLNDKQ 237
Query: 364 LYVAIAQRKEDRQA 377
+YV + +++R+A
Sbjct: 238 VYVGYFKSRQEREA 251
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 63/83 (75%), Gaps = 2/83 (2%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L +L SPEQQKQILGERLYPL+ + +P L KITGMLLEMDNSE+L L+ESP++L+
Sbjct: 698 LIALLTNASPEQQKQILGERLYPLIYERQPGLAGKITGMLLEMDNSEVLHLIESPDALSE 757
Query: 596 KVEEAVQVLK--LSEAKVSTQEA 616
K+EEA+ VL+ + K STQ A
Sbjct: 758 KIEEALAVLRAHAEQQKGSTQAA 780
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/382 (50%), Positives = 260/382 (68%), Gaps = 3/382 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DV + LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L K +RI WS RDP R+SGV N+F+KNL +IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
AT E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 122 ATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D +E L E F +GKI S + E+G S+GFGFV F+ + A A++
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G K LY ARAQKKAER+Q L+ +FEE +++R G N+YVKN+DD + D+
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDD 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS G ITSAKVM DE+G +KGFGFVCF++ EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQYAQHMAGI 390
AQRKE+R+AHL QY +HM G+
Sbjct: 362 AQRKEERKAHLASQYMRHMTGM 383
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 55/72 (76%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
++ +LA P++QKQILGERLYP++E +L KITGMLLE++NSELL ++E E+L
Sbjct: 556 LIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALK 615
Query: 595 VKVEEAVQVLKL 606
KVEEAV VL++
Sbjct: 616 AKVEEAVAVLQV 627
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/401 (48%), Positives = 280/401 (69%), Gaps = 5/401 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+ D RA+E
Sbjct: 44 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 103
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ + G+ RI WS RDP RK+G N+F+KNL E IDN L + F FGN++SCKV
Sbjct: 104 QLNYSSIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKV 163
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
AT E G+SKG+GFV +ET E+A AI+ +NG + DK++YVG I + +R L A+
Sbjct: 164 ATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMKAQ 223
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D +VTEE + F +FG + S +I RD+ G SRGFGFVNF+ D+A++A+E
Sbjct: 224 FTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVE 283
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
++ K L+ +RAQKKAEREQ LR +E+ + E++ K++G N+Y+KN++DD+ D+
Sbjct: 284 GLHDLDFKGKKLFVSRAQKKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDDDR 343
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F G+ITSAKVMRDEKG +KGFGFVCFSSP+EA+KAV + M+ KPLYV++A
Sbjct: 344 LRTEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLA 403
Query: 370 QRKEDRQAHLQLQYAQ-HMAGIEGSSANVIPSGYPS--LYY 407
QR++ R+ L+ Q AQ + ++ ++A+ + GY + +YY
Sbjct: 404 QRRDVRRQQLESQIAQRNQIRMQQAAASGLAGGYINGPMYY 444
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/429 (46%), Positives = 286/429 (66%), Gaps = 15/429 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLHPDVT+ L++ FS ++ S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSG+ N+F+KNL SIDN L + F FG+I+S KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+E G S+G GFV FET E+A AI +NG + D++++VG F + R L + A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL ++V E+ L + FS+FG + S+ + RD NG SRGFGFVNF+ ++A++A++
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+AER+ L+ +FE+ ++ER +Y+G N+YVKN+DD + DE
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS G ITSAKVM E +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LKEVFSTYGVITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQH-----MAGIEGSSANVIP----SGYPSLYYTTPPGIVSQVPPR 420
QRKE+R+A L QY + ++ + ++ ++P S ++YY++ G ++ + P
Sbjct: 369 QRKEERKAILTNQYRRRPSHPVLSSFQQPTSYLLPAVPQSTAQAVYYSS--GSITPMQPD 426
Query: 421 PGLMYQPLG 429
P QP G
Sbjct: 427 PRWTAQPHG 435
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 160/296 (54%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFET 149
D +++L+V +L + L EMF GNI+S +V +S G+ ++ F+
Sbjct: 2 DTGGHGCSLSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + I I S R + N+F+KNL++ + + L +
Sbjct: 62 PADAERALDTMNFEVIKGQPIR----IMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + +E+G SRGFGFV+F+ + A++A+ MNG ++ + ++ + +
Sbjct: 118 TFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
+RE L R L + +N+YVKN+ +V ++ L+ FSQ G + S KVMRD
Sbjct: 177 QKREAEL--------GARALGF--TNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGFV F EEA KAV+ +G + + LYV AQ++ +RQ+ L+ ++ Q
Sbjct: 227 NGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQ 282
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/380 (50%), Positives = 257/380 (67%), Gaps = 1/380 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DV + LFD FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP R+SGV N+F+KNL +IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI + ++ L A +T
Sbjct: 122 ATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQELGEKAKLFT 181
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KN D +E L E F +GKI S + E+G S+GFGFV F+ + A A++A+
Sbjct: 182 NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQAL 241
Query: 252 NGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
NG +G K LY ARAQKKAER+Q L+ +FEE +++R G N+YVKN+DD + D+ L
Sbjct: 242 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 301
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ FS G ITSAKVM DE+G +KGFGFVCF+ EA+ AV +G ++ KPLYVA+AQ
Sbjct: 302 RIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQ 361
Query: 371 RKEDRQAHLQLQYAQHMAGI 390
RKE+R+A L QY +HM G+
Sbjct: 362 RKEERKADLASQYMRHMTGM 381
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 249/629 (39%), Positives = 358/629 (56%), Gaps = 54/629 (8%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T ASLYVG+L+ V + LF+ FS ++S+RVC+D+ T +S Y YVNF+ D +A
Sbjct: 49 TSASLYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQA 108
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
IE N++ + G+ RI WS RDP R++G N+F+KNL +IDN L + F FG I+SC
Sbjct: 109 IEDLNYSLIEGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGRILSC 168
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPA 187
KVAT E G SK GFV +ET E+A AAIEN+NG + D+ ++VG+ + K DR
Sbjct: 169 KVATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFEEMK 228
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A +TN+F+KNL + T++ L E FS +G I S + +D G S+GFGFVNFDN +DA +A
Sbjct: 229 ANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKA 288
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
++ +N I + +Y RAQKK ER + LR Q+E + E++ KY+G N+++KN+DD +
Sbjct: 289 VDELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDTIDS 348
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E+L+ F G ITSA+VM DE+G +KGFGFVCFSSPEEA+KA+ + M+ KPLYVA
Sbjct: 349 EKLENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLYVA 408
Query: 368 IAQRKEDRQAHLQLQYA-------QHMAGIEGSSANVIPSGYPS-LYYTTPPGIVSQVPP 419
+AQRK+ R++ L+ Q Q+ A ++ IP + + ++Y PG PP
Sbjct: 409 LAQRKDVRRSQLEQQIQARNQMRMQNAAAAAAAAGGAIPGQFMNPMFYGQQPGF---FPP 465
Query: 420 RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNM-LPQVGAHY 478
+P G ANG P P +P + RG G + PQ GA +
Sbjct: 466 PGANGGRPNG------ANGAGPNAGP--NANPQMMMAAAAAAARG---GQIPPPQAGAGW 514
Query: 479 MQQSSQSAASSKDSSNQQK-----GGQSKYV--PNGRIRELNKGSGVSLGTFNSGGVMAR 531
+ + N Q+ G Y PNG+ R + G + G +
Sbjct: 515 ----------GRPNPNGQQIPPVYGMPPVYQNGPNGQPR-----GAPAPGMYPPNGRPTK 559
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLL 587
D L +L++ PEQQK+ILGE LYP + ++P+ KITGM+L++DN E+L LL
Sbjct: 560 ARD-LAAILSSVPPEQQKRILGEELYPKIVSTGRANEPEAAGKITGMMLDLDNQEILSLL 618
Query: 588 ESPESLAVKVEEAVQVLKLSEAKVSTQEA 616
E E E+A+ + E K S +E
Sbjct: 619 EDDELFNNHFEDALTAYE--EYKQSNEEG 645
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/376 (50%), Positives = 258/376 (68%), Gaps = 2/376 (0%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
+T ASLY+G+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVNF + D +
Sbjct: 66 STSASLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 125
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
A++ N+T + G+ RI WS RDP RK G N+F+KNL +IDN L + F FG I+S
Sbjct: 126 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILS 185
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSP 186
CKVA E G SKG+GFV F++ +SANAAIE++NG + DK++YVG I + DR +
Sbjct: 186 CKVAVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSKFEAL 245
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
A +TN+++KNLD D TEE + F K+GKI SL +A+D G RGF FVNF D A++
Sbjct: 246 KANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQ 305
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
A++ +N K LY RAQKK ER++ LR Q+E+ + E+I KY+G N++VKN+ D++
Sbjct: 306 AVDELNDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEID 365
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
DE LK+ FS GTITSAKVM DE +KGFGFVC+S+PEEA+KA+ + ML KPLYV
Sbjct: 366 DERLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLYV 425
Query: 367 AIAQRKEDRQAHLQLQ 382
A+AQRKE R++ L+ Q
Sbjct: 426 ALAQRKEVRRSQLEAQ 441
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 40/234 (17%)
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHL 207
++ ESA+ ++ NG T +Y+G LD VTE L
Sbjct: 49 DSSESASNKTKSENGNTSTSASLYIGE-----------------------LDPMVTEAML 85
Query: 208 VEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
E F+ G +AS+ + RD S G+ +VNF N +D +AL+ +N ++I
Sbjct: 86 FELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLI---------- 135
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
K +I+ Q R + K NV++KN+D + ++ L FS G I S KV
Sbjct: 136 --KGRPCRIMWSQ----RDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVA 189
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
DE G +KG+GFV F S + A+ A+ +G +L+ K +YV + DRQ+ +
Sbjct: 190 VDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSKFE 243
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 48/71 (67%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
LA E +KQ++GE LYP V + +L KITGMLLEMDNSELL LLE+ L KV+E
Sbjct: 548 LARAPEENRKQMIGEFLYPKVYVREEELAGKITGMLLEMDNSELLELLENDGMLNEKVDE 607
Query: 600 AVQVLKLSEAK 610
A+ VL+ AK
Sbjct: 608 ALAVLREYAAK 618
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 249/666 (37%), Positives = 346/666 (51%), Gaps = 137/666 (20%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 110 ADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 169
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 170 GNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 229
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KN++ DVT+E F K+G+I S ++RD E G SRGFGFVNF +
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+ A A+EA+N + + LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y+KN
Sbjct: 290 HEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKN 349
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMR-----------------------------DEKG 331
+ DD+ DE+L+ FS G ITSAKVMR +EKG
Sbjct: 350 LSDDIDDEKLRELFSSYGNITSAKVMREAIVDAPAEAEKDKEADKEKAKKEAGDKSEEKG 409
Query: 332 -----------------------------INKGFGF--VCFSSPEEASKAVNTFHGYMLH 360
+ K GF VCFS+P+EASKAV + M+H
Sbjct: 410 EAKSESEDKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVH 469
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVP 418
KPLYVA+AQRK+ R++ L+ A +S ++P + PS + ++
Sbjct: 470 GKPLYVALAQRKDVRKSQLETPSA--------NSKLLLPPEWRNPSCSLPSSMAHLASKA 521
Query: 419 PRPGLMYQ-PLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAH 477
P L + L ++ W V P P+ + P P G+ G Q G H
Sbjct: 522 SSPVLSVECSLLVKLVW-----VMPGMPSGRPGQFPQFP-------GQQGGRAPGQGGIH 569
Query: 478 YMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLN 537
M+Q +S + L FN
Sbjct: 570 AMKQPLRS--------------------------------IILAVFN------------- 584
Query: 538 GMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
AAP QQKQ+LGE +YP + +P+L KITGMLLEMDNSEL+ L++ +L KV
Sbjct: 585 ---AAPE-SQQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKV 640
Query: 598 EEAVQV 603
+EA+ V
Sbjct: 641 DEALTV 646
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/453 (44%), Positives = 280/453 (61%), Gaps = 21/453 (4%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T+ ASLYVG+L P V++ L+D FS S++S+RVC+D+ T S Y YVNF
Sbjct: 30 TPKVETSGASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDH 89
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
+AIE N+T + GK RI WS RDP RK G N+++KNL +IDN L E F F
Sbjct: 90 EAGRKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTF 149
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVAT ++G S+G GFV FE E A AIE +NG + D+ +YV + K DR
Sbjct: 150 GNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQS 209
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L AK+TN+++KN+D + ++E + FSK+GKI S ++ +D G RGFGF+NF++
Sbjct: 210 KLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDH 269
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
A RA++ +N S + LY RAQKK ER+Q L+ Q+E R E++ KY+G N+++KN+
Sbjct: 270 STAARAVDELNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNL 329
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE+LK F+ GTITS KVM+DE G ++GFGFVCFS+PEEA+KA+ + ++
Sbjct: 330 DDSIDDEKLKDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAG 389
Query: 362 KPLYVAIAQRKEDR--------QAHLQLQYAQHMAGIEGSSANVIPSGY--PSLYYTTPP 411
KPLYVAIAQRKE R QA Q+++ QH ++ +P + P +YY P
Sbjct: 390 KPLYVAIAQRKEVRRNQLAQQIQARNQMRF-QHANAAAAAAVAGLPGQFIPPPMYYGGIP 448
Query: 412 GIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTR 444
V P P + TG NG +PP +
Sbjct: 449 PRVPFQGPNPQM--------TGMPKNGAIPPQQ 473
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/411 (47%), Positives = 275/411 (66%), Gaps = 8/411 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SRGFGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LY RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE+
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPP 419
E R+A L QY Q ++ + ++ S P+ Y+ V+ PP
Sbjct: 369 ---EGRKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLPAVPQVTACPP 416
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +I+ Q R + K N+++KN++D
Sbjct: 66 ERALDTMNFEVI------------KGQPIRIMWSQ----RDPGLRKSGVGNIFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G ++GFGFV F + E A A++T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + + +R+ L
Sbjct: 169 FVGHFKSRREREVEL 183
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 45/59 (76%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
MLAA +QKQ++GERL+PLV L KITGMLLE+DNSELLL+LESPESL KV
Sbjct: 560 MLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLESPESLNAKV 618
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/416 (46%), Positives = 277/416 (66%), Gaps = 9/416 (2%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVNFL+ D RA+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 106
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N++ + + RI WS RDP R++G N+F+KNL IDN L + F FGNI+SCKVA
Sbjct: 107 LNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVA 166
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKY 190
TSE G S G+GFV +ET E+A+AAI+++NG + DK++YVG I + +R + A++
Sbjct: 167 TSESG-SLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRARF 225
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN++ KN+D+DVT+E + F+K+GKI S ++ RDE+G S+GFGFVNF+N D+A+ A++
Sbjct: 226 TNVYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDE 285
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++ S + L+ ARAQKK+ERE+ LR +E + E++ K++G N+Y+KNI + DE L
Sbjct: 286 LHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERL 345
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ G ITS K+MR G+++GFGFVC+S+PEEA+KAV+ +G ML +PLYVA+AQ
Sbjct: 346 RDEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQ 405
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVPPRPGLM 424
RK+ R+ L+ Q Q A GY P +YY P P +PG M
Sbjct: 406 RKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMYYPQPGAF----PGQPGGM 457
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 165/536 (30%), Positives = 256/536 (47%), Gaps = 78/536 (14%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAAI 157
+L+V L S+ L E+F G + S C+ A + +S G+ +V F A+
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTR--RSLGYAYVNFLNAADGERAM 104
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKF 214
E LN + + ++ I S R PA + T N+F+KNLD+ + + L + F+ F
Sbjct: 105 EQLNYSLIRNRPCR----IMWSQR---DPALRRTGQGNIFIKNLDAGIDNKALHDTFAAF 157
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
G I S +A E+G S G+GFV+++ + A A++ +NG ++ K +Y + ER+
Sbjct: 158 GNILSCKVATSESG-SLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGHHIPRKERQA 216
Query: 275 ILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK 334
+ EE R + +NVY KN+D DVTDEE + F++ G ITS + RDE G +K
Sbjct: 217 ----KIEESRA------RFTNVYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSK 266
Query: 335 GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYA----QHMAGI 390
GFGFV F + +EA AV+ H + L+VA AQ+K +R+ L+ Y + +A
Sbjct: 267 GFGFVNFENHDEAQTAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKF 326
Query: 391 EGSSANV--IPSGYPSLYYT---TPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP 445
+G + + IP Y P G ++ +M P G+ G+ GFV + P
Sbjct: 327 QGVNLYLKNIPESYDDERLRDEFAPFGAITSCK----IMRAPSGVSRGF---GFVCYSAP 379
Query: 446 AFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVP 505
+ + MNG ML + + A KD QQ Q
Sbjct: 380 -----------EEANKAVSEMNGKMLDNRPLYV------ALAQRKDVRRQQLEAQIMQRN 422
Query: 506 NGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGM----------------LAAPSPEQQK 549
R+++ G+ + G+ +P G LA SP++QK
Sbjct: 423 QLRLQQQAAAQGMG---YPGPGMYYPQPGAFPGQPGGMGDEAPGALTAAALAKASPDEQK 479
Query: 550 QILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
Q+LGE +YP V +P+L K+TGM+LE+ +ELL LLE E+L KV EA++VLK
Sbjct: 480 QMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVSEALEVLK 535
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 244/632 (38%), Positives = 336/632 (53%), Gaps = 95/632 (15%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD------ 65
ASLYVGDLHPDVT+ L+ FS + S+RVC+D T RS Y Y+NF P D
Sbjct: 11 ASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADGSEEVG 70
Query: 66 -----------------AIR-AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL 107
A+R + ++ H+ L GK R CRD +G LF
Sbjct: 71 RGKHFYQEHGRVHRQQGAVRHLLRIREHSVLQGKGQRCQGLCRDAGGDVTGRTALF---- 126
Query: 108 IESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD 167
+V E G SKG+GFV FETEE+AN AIE +NG + D
Sbjct: 127 ----------------------QVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLND 163
Query: 168 KRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD 225
++++VG F + +R L S A K+TN+++KN D T+E L E FS FG+ S+ + +D
Sbjct: 164 RKVFVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKD 223
Query: 226 ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRK 285
E G SRGFGFVNF + DA++A++ MNG+ + KV+Y RAQK+ ER+ L+ +FE ++
Sbjct: 224 ERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQ 283
Query: 286 ERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPE 345
+RI +Y+G N+YVKN+DD + DE L+ F+ GTITSAKVM D ++GFGFVCFSSPE
Sbjct: 284 DRIQRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKVMTDGPQ-SRGFGFVCFSSPE 342
Query: 346 EASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSL 405
EA+KAV +G ++ KPLYVA+AQR+E+R+A L +Y Q +A + S+ VI S +
Sbjct: 343 EATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRLATLRTMSSPVIDSYQQAG 402
Query: 406 YYTT----------PPGIVSQVPPRPGLMYQPLGLRTGW-------RANGFVPPTRPAFQ 448
YY T P VS + P QP L+ + R + + R A
Sbjct: 403 YYMTVPQPPTRSFYSPNAVSAMRALPRWTGQPHRLQGPYTIVSGPRRGSTPIASVRQAST 462
Query: 449 VSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGR 508
+P ++ N G +Q+ D + GQ KY +
Sbjct: 463 QAPNIISSAQKTNNIG------------------TQTVGGRADIPGIPRSGQYKY--SSA 502
Query: 509 IRELNKGSGVSLGTFN---SGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKP 565
+R V S + ++P + MLAA QKQ+LGERLYPL+ P
Sbjct: 503 VRNAQHVIAVHAPPTRPQPSVHIQGQEP-LTASMLAAAPLMDQKQLLGERLYPLISALHP 561
Query: 566 DLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
+L KITGMLLE+DNSELL +LE+PESL KV
Sbjct: 562 NLAGKITGMLLEIDNSELLHMLETPESLHSKV 593
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 24/197 (12%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
PA +L++ +L DVTE L +KFS G I S+ + RD S G+ ++NF P D
Sbjct: 6 PAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPAD- 64
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV--YVKNID 302
GS + + + + R+Q R+ +L+ KG ++
Sbjct: 65 --------GSEEVGRGKHFYQEHGRVHRQQGAVRHLLRIREHSVLQGKGQRCQGLCRDAG 116
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
DVT G +V+ DE+G +KG+GFV F + E A++A+ T +G +L+ +
Sbjct: 117 GDVT-----------GRTALFQVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDR 164
Query: 363 PLYVAIAQRKEDRQAHL 379
++V + +++R+ L
Sbjct: 165 KVFVGNFKSRKEREEEL 181
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 237/604 (39%), Positives = 335/604 (55%), Gaps = 35/604 (5%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
V +A P SLYVGDLHPDV + L + FS + S+RVC+D+ T RS Y YVNF P
Sbjct: 9 VASSAKKP-SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERP 67
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA +A+E N +HG+ +RI WS R P + N+FVKNL S+++ L F F
Sbjct: 68 EDAKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVF 127
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
GNI+SCK+A E KSKG+GFVQFETEE+A AI+ NG KRIYVGRF +S+R
Sbjct: 128 GNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSER-- 185
Query: 184 PSPAAK-----YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
S AK +TN+F+KN + +E L + F+KFGKI S ++ D +G GFGFV F
Sbjct: 186 -SEQAKRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAF 244
Query: 239 DNPDDARRALEAMNGSVI--GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
+NPDDA +A++ M + + LY +R QKK ER L +++ ++ ER +Y+G+N+
Sbjct: 245 ENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANL 304
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
Y+KN+DD + D+ L+ F + G + SAKVMR + G +KGFGFVCF P+EA KA+ G
Sbjct: 305 YLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKG 364
Query: 357 YMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQ 416
M+ KPLYV++AQRKEDR+A + QY Q +A I A SG + Y + +V
Sbjct: 365 KMVCTKPLYVSMAQRKEDRKAFIASQYMQRIASIR-MQATSFGSG---MTYMSDSTVV-- 418
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
+P G +N T Q S L + Q + G M+
Sbjct: 419 ---QPLFACYGRGTLQRNMSNDVAVATMVPGQHSWLQMGDIDKSQTQRMAVGAMV----- 470
Query: 477 HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDML 536
Y QQ+ +S + S +G P + +G G V P +L
Sbjct: 471 -YGQQNVRSQYAIMQSDGDCRGQTENPAPYSQTFSEFRGYMAP----RVGQVEPLTPHIL 525
Query: 537 NGMLAAPSPEQQKQILGERLYPLVEK-HKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
+ + + ++QKQ++ ER+ PLV + +K KI GMLLEMDN+ELL++L + L
Sbjct: 526 SQL----TVQKQKQVIAERICPLVPRIYKGPDANKIMGMLLEMDNAELLMMLNNEGLLRS 581
Query: 596 KVEE 599
++ E
Sbjct: 582 RINE 585
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 229/540 (42%), Positives = 322/540 (59%), Gaps = 53/540 (9%)
Query: 111 IDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
IDN L + F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D+++
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 59
Query: 171 YVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG 228
+VGRF + +R L + A ++TN+++KN D+ +E L E F KFG S+ + DE+G
Sbjct: 60 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 119
Query: 229 TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
S+GFGFV+F+ +DA++A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI
Sbjct: 120 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 179
Query: 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEAS 348
+Y+G N+YVKN+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+
Sbjct: 180 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 238
Query: 349 KAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSG 401
KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA + VI PSG
Sbjct: 239 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 298
Query: 402 Y----------PSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVS 450
Y + YY PP ++Q+ P P W A G RP FQ
Sbjct: 299 YFMAAIPQTQNRAAYY--PPSQIAQLRPSP-----------RWTAQG----ARPHPFQNM 341
Query: 451 PLPVNPKHNRQNRGRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPN 506
P + P R M + +P+V + S+Q+ ++ + VP
Sbjct: 342 PGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ 401
Query: 507 GRI--------RELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYP 558
+ + LN V++ + V ++P + MLA P++QKQ+LGERL+P
Sbjct: 402 YKYAAGVRNPQQHLNAQPQVTMQQ-PAVHVQGQEP-LTASMLAFAPPQEQKQMLGERLFP 459
Query: 559 LVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
L++ P L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 460 LIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 519
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 158/279 (56%), Gaps = 21/279 (7%)
Query: 23 VTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKM 82
+ + L+D FS F ++ S +V D S YG+V+F + A RAIE N L+ +
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 58
Query: 83 LRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSED 136
+ + S R+ + AR N+++KN E +D+ RL+E+F FG +S KV T E
Sbjct: 59 VFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES 118
Query: 137 GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----------VLPSP 186
GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R +
Sbjct: 119 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 178
Query: 187 AAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+Y NL++KNLD + +E L ++FS FG I S + E G S+GFGFV F +P++A
Sbjct: 179 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEA 237
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
+A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 238 TKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 276
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/458 (45%), Positives = 295/458 (64%), Gaps = 21/458 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGD+HPDVT+ LF+ F+ +AS+RVC+D+ T RS Y YVNF + DA RA++
Sbjct: 45 ASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALD 104
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T + G RI WS RDP RKSGV N+FVKNL SIDN L + F FGNI+SCKV
Sbjct: 105 TMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKV 164
Query: 132 ATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY 190
A G SKG+G+V +ET E+A AI +NG + ++VG+F K+ DR A +
Sbjct: 165 AIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGQFQKRQDR---PDADDW 221
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGT--SRGFGFVNFDNPDDARRAL 248
TN ++KN+ + T+ L+++F FGK+ S ++ +D +RGFGFVN++ D A +A+
Sbjct: 222 TNCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAV 281
Query: 249 EAMNGSVIGS-----KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
+A+NG + +Y +AQK++ERE+ LR++FE+ + ERI KY+G N+YVKN+DD
Sbjct: 282 DALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDD 341
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
++D+EL+ F++CGTITS++VMRD G ++GFGFVCFS+PEEA+KAV +G ++ KP
Sbjct: 342 QLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKP 401
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPP--GIVSQVPP-- 419
+YVA+AQRKE R+A L+ Q+AQ AG+ +P G P +Y P G Q+PP
Sbjct: 402 VYVALAQRKEVRRAQLEAQHAQQRAGM--VVGRGMPMGQPPMYGAAPMFYGQPGQLPPQA 459
Query: 420 RPGLMY----QPLGLRTGWRANGFVPPTRPAFQVSPLP 453
R G MY P G++ G G P PA P+P
Sbjct: 460 RQGFMYPQQMMPRGVQRGPMPYGARVPGAPAPGGYPMP 497
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 22/198 (11%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTT-GRSTCYGYVNFL--- 61
P A + YV ++ TD +L F F + S V KD+ + +G+VN+
Sbjct: 216 PDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESD 275
Query: 62 SPHDAIRAIEVKNH-------TQLH-GKMLRISWSCRDPDAR----------KSGVANLF 103
+ H A+ A+ K++ T+++ GK + S R+ + K NL+
Sbjct: 276 AAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLY 335
Query: 104 VKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
VKNL + + + L+E F G I S +V +G S+G GFV F T E AN A+ +NG
Sbjct: 336 VKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGK 395
Query: 164 TVGDKRIYVGRFIKKSDR 181
+ K +YV +K R
Sbjct: 396 LISGKPVYVALAQRKEVR 413
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 231/555 (41%), Positives = 316/555 (56%), Gaps = 54/555 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD+T+ L+D F + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP R+SG N+F+KNL SIDN L + F +FGNI+SCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+G SKG GFV +E++ESA AIE +NG + DK+++V RF ++DR+ A
Sbjct: 122 VCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKH 180
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRAL 248
+TNLF+KNL + L+E F +FG++ S + DE G S+ GF++F D A A+
Sbjct: 181 FTNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAV 240
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
E M+ I K LY RAQKKAER L+ ++E+ ++ERI +Y+G N+YVKN+DD + DE
Sbjct: 241 EIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDE 300
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F Q G ITSAKV+ D G +KGFGFVCFSSPEEA+KAV +G + KPLYV +
Sbjct: 301 GLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGL 360
Query: 369 AQRKEDRQAHLQLQYAQHMA-GIEGSSANVIPSGYPSLYYTTPPGIVSQ--VPPR---PG 422
AQRKEDR+AHLQ QY Q ++ GI + +V+Q PPR P
Sbjct: 361 AQRKEDRKAHLQQQYMQRVSTGIR-------------MQAFMGNQVVNQNFQPPRYILPT 407
Query: 423 LMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQS 482
+ QP+ + P P + +P P Q G + G M Q G +
Sbjct: 408 MQGQPVQM---------FPQGTPMVRATPRWAPPNQRVQMPGMIRGRMAQQGGPQFRLTP 458
Query: 483 SQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDML-NGMLA 541
S N Q + +P ++ N+ +G + P+ L + MLA
Sbjct: 459 S--------VRNVQIPSEVIQMP-PQMPHQNQPAG------------DQAPETLTSSMLA 497
Query: 542 APSPEQQKQILGERL 556
+P++QKQ+LGERL
Sbjct: 498 NANPQEQKQMLGERL 512
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/420 (45%), Positives = 273/420 (65%), Gaps = 7/420 (1%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLY GDL P T+ +L++ FS + S+RVC+D T RS Y YVNF +DA RAI+
Sbjct: 33 SLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAIDA 92
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N ++GK +RI +S RDP RKSGV N+F+KNL + IDN L + F FGNI+S KVA
Sbjct: 93 LNFQVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFGNIVSAKVA 152
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+SKG+GFVQF+TEE A +AIE +NG + DK++YVG F K+++R + N
Sbjct: 153 TDLQGQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVGPFQKRNER--GGGPTTFNN 210
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL VTEE L E F KFG + S+++ +D G S+GFGFV +++ + A +++E ++
Sbjct: 211 VYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVEELD 270
Query: 253 G-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G I K RAQKK+ERE L+ +F+ +R+ER+ K G+N+Y+KN++D V D +L+
Sbjct: 271 GYDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAKLR 330
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F++ GTITS +VMRD G ++G FV FSS +EA++AV +G M +KPLYVA+AQR
Sbjct: 331 ELFAEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRAVTEMNGKMAGQKPLYVALAQR 390
Query: 372 KEDRQAHLQLQYAQHMAGIEG----SSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQP 427
KEDR+ LQ Q+AQ G + P G P Y PPG++ P+PG +QP
Sbjct: 391 KEDRRLRLQAQFAQRQVAAGGMPNMGPYGMPPPGAPMYYGQPPPGVMGPPQPQPGYGFQP 450
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 48/64 (75%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
+L L +P+QQ+ +LGE LYPLV+ +P AKITGMLLEMD+SE+L L+ESPE+L
Sbjct: 528 LLAAQLPTATPDQQRMLLGEALYPLVDAVEPASSAKITGMLLEMDHSEVLHLIESPEALR 587
Query: 595 VKVE 598
KV+
Sbjct: 588 AKVQ 591
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/410 (48%), Positives = 269/410 (65%), Gaps = 9/410 (2%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
++ T ASLYVGDLHPDV + LF+ FS + S+RVC+D+ T S Y YVNF P DA
Sbjct: 27 SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADA 86
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
RA++ N LHGK +RI WS RDP R+SG N+F+KNL + IDN + + F FGNI
Sbjct: 87 ERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNI 146
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS--DRVLP 184
+SCKVA EDG SKG+GFV FETEE+A AI+ +NG + K+++VG+F ++ +R L
Sbjct: 147 LSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELG 206
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A ++TN+++KN +E L + F+KFG I S + E G S+GFGFV F NP++A
Sbjct: 207 ETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEA 265
Query: 245 RRALEAMNGSVI-GSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
A++A++ S I G+ + L+ RAQKK+ER L+ + E+ + ER+ KY+G N+YVKN+D
Sbjct: 266 ETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLD 325
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ V D+ LK F G ITSAKVM DE G +KGFGFVCF PEEA+ AV + M+ K
Sbjct: 326 ETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSK 385
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG 412
PLYVAIAQRKEDR+A L QY Q +A + +P ++Y T PG
Sbjct: 386 PLYVAIAQRKEDRRAQLASQYMQRLASMRMHGN--VPGA--AMYNPTQPG 431
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL--VAKITGMLLEMDNSEL 583
G V+ + + + MLAA +P++QKQ+LGER+Y L+EK P KITGM+LE+DNSEL
Sbjct: 560 GIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSEL 619
Query: 584 LLLLESPESLAVKVEEAVQVL 604
+++L+ E KV+EA VL
Sbjct: 620 IMMLQDSELFRSKVDEAASVL 640
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/388 (49%), Positives = 268/388 (69%), Gaps = 11/388 (2%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
+ G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 VCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREAELGARAME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKF-----GKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+TN+++KNL D+ E L E FS+F GK+ S+ + RD++G SRGFGFVNF+ ++A
Sbjct: 190 FTNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEA 249
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKY--KGSNVYVKNID 302
++A+ MNG + ++LY RAQK+ ER+ L+ +FE+ +++R+ +Y +G N+YVKN+D
Sbjct: 250 QKAVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGVNLYVKNLD 309
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
D + DE+L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ K
Sbjct: 310 DSINDEKLRKEFSPYGMITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 368
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
PLYVA+AQRKE+R+A L QY Q ++ +
Sbjct: 369 PLYVALAQRKEERKAILTNQYMQRLSTV 396
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 106/195 (54%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF P DA
Sbjct: 6 PIFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +I+ Q R + K N+++KN++D
Sbjct: 66 ERALDTMNFEVI------------KGQPIRIMWSQ----RDPGLRKSGVGNIFIKNLEDS 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ D+ G ++GFGFV F + E A A++T +G +L+ + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A L
Sbjct: 169 FVGHFKSRQEREAEL 183
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 45/59 (76%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL KV
Sbjct: 438 MLAAAPLHEQKQMIGERLYPLIYDVHTQLAGKITGMLLEIDNSELLLMLESPESLNAKV 496
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/468 (45%), Positives = 289/468 (61%), Gaps = 20/468 (4%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
+ ASLYVGDL P V++ L+D FS S++S+RVC+D+ T S Y YVNF +A
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
IE N+T + G++ RI WS RDP RK G N+F+KNL IDN L + F FG+I+S
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPA 187
K+AT E+GKSKG GFV FE E +A AI+ LNG + + IYV + K+ D L
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETK 215
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A YTNL++KN++S+ T+E E F+KFG I S + +D +G +GFGFVN++ +DA +A
Sbjct: 216 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 275
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
+EA+N S + + LY RAQKK ER +L+ Q+E R E++ KY+G N++VKN+DD V D
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E+L+ F+ GTITSAKVMR E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVA
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Query: 368 IAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVP 418
IAQRK+ R++ L Q++Y Q A ++A + P ++Y PP V
Sbjct: 396 IAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNG 455
Query: 419 PRPGLMYQPLGLRTGWRANGFVPPTR--PAFQVSP---LPVNPKHNRQ 461
P P M P+G G NG P R P + V P P N +N Q
Sbjct: 456 PNPQQM-NPMG---GMPKNGMPPQFRNGPVYGVPPQGGFPRNANNNNQ 499
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/384 (48%), Positives = 261/384 (67%), Gaps = 3/384 (0%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL T+ +L++ FS + S+RVC+D T RS Y YVNF DA RAI+V
Sbjct: 44 SLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAIDV 103
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N ++GK +RI +S RDP RKSGV N+F+KNL + ID V L++ F FGNI+S KVA
Sbjct: 104 LNFQVVNGKPIRILYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFGNIVSAKVA 163
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G SKG+GF+QF+TE +A AIE +NG + DK +YVG F ++++R + K+ N
Sbjct: 164 TDGQGNSKGYGFIQFDTEAAAKEAIEKVNGMELNDKVVYVGPFQRRAER--GTTETKFNN 221
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL +VT+E L + F FG + S++I++DE+G S+GFGFV ++ P+DA +A+E ++
Sbjct: 222 VFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASKAVEELD 281
Query: 253 GS-VIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
G K RAQKKAERE L+ +FE +R+ER+ K G+N+Y+KN++D DE L+
Sbjct: 282 GKHGEEDKKWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEDGADDETLR 341
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F + GTITS +VMRD G+++G FV FSSPEEA++AV +G M+ KPLYVA+AQR
Sbjct: 342 ELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALAQR 401
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSA 395
KEDR+ LQ Q+AQ G G A
Sbjct: 402 KEDRRMRLQAQFAQRSMGPGGVMA 425
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T T +++V +L +VTD EL F F + SV + KD G+S +G+V + +P DA
Sbjct: 215 TETKFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDE-DGKSKGFGFVCYETPEDA 273
Query: 67 IRAIEVKNHTQLHGKMLRISWSCR---------------DPDAR----KSGVANLFVKNL 107
+A+E + HG+ + CR + + R K ANL++KNL
Sbjct: 274 SKAVEELDGK--HGEEDKKWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNL 331
Query: 108 IESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD 167
+ D+ L+E+F+ FG I SC+V G S+G FV F + E A A+ LNG VG
Sbjct: 332 EDGADDETLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAVTELNGKMVGA 391
Query: 168 KRIYVGRFIKKSDR 181
K +YV +K DR
Sbjct: 392 KPLYVALAQRKEDR 405
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
++ L +P+QQ+ ILGE LYPLV+ AK+TGMLLEMD +E+L L+ES ++L
Sbjct: 545 LIVSQLGTATPDQQRMILGEALYPLVDAVDSANAAKVTGMLLEMDQAEVLHLIESADALK 604
Query: 595 VKVEE 599
KV+E
Sbjct: 605 AKVQE 609
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LY+ +L D L + F EF ++ S RV +D+ +G S +V F SP +A RA+
Sbjct: 324 ANLYIKNLEDGADDETLRELFKEFGTITSCRVMRDA-SGVSRGSAFVAFSSPEEATRAVT 382
Query: 72 VKNHTQLHGKMLRISWSCRDPDAR 95
N + K L ++ + R D R
Sbjct: 383 ELNGKMVGAKPLYVALAQRKEDRR 406
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/468 (45%), Positives = 288/468 (61%), Gaps = 20/468 (4%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
+ ASLYVGDL P V++ L+D FS S++S+RVC+D+ T S Y YVNF +A
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
IE N+T + G++ RI WS RDP RK G N+F+KNL IDN L + F FG+I+S
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPA 187
K+AT E+GKSKG GFV FE E +A AI+ LNG + + IYV + K+ D L
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETK 215
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A YTNL++KN++S+ T+E E F+KFG I S + +D +G +GFGFVN++ +DA +A
Sbjct: 216 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 275
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
+EA+N S + + LY RAQKK ER +L+ Q+E R E++ KY+G N++VKN+DD V D
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E+L+ F+ GTITSAKVMR E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVA
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Query: 368 IAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVP 418
IAQRK+ R++ L Q++Y Q A ++A + P ++Y PP V
Sbjct: 396 IAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNG 455
Query: 419 PRPGLMYQPLGLRTGWRANGFVPPTR--PAFQVSP---LPVNPKHNRQ 461
P P M P+G G NG P R P + V P P N N Q
Sbjct: 456 PNPQQM-NPMG---GMPKNGMPPQFRNGPVYGVPPQGGFPRNANDNNQ 499
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/468 (45%), Positives = 288/468 (61%), Gaps = 20/468 (4%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
+ ASLYVGDL P V++ L+D FS S++S+RVC+D+ T S Y YVNF +A
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
IE N+T + G++ RI WS RDP RK G N+F+KNL IDN L + F FG+I+S
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPA 187
K+AT E+GKSKG GFV FE E +A AI+ LNG + + IYV + K+ D L
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETK 215
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A YTNL++KN++S+ T+E E F+KFG I S + +D +G +GFGFVN++ +DA +A
Sbjct: 216 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 275
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
+EA+N S + + LY RAQKK ER +L+ Q+E R E++ KY+G N++VKN+DD V D
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E+L+ F+ GTITSAKVMR E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVA
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Query: 368 IAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVP 418
IAQRK+ R++ L Q++Y Q A ++A + P ++Y PP V
Sbjct: 396 IAQRKDVRRSQLAQQIQARNQMRYQQATAARAAAAAGMPGQFMPPMFYGVMPPRGVPFNG 455
Query: 419 PRPGLMYQPLGLRTGWRANGFVPPTR--PAFQVSP---LPVNPKHNRQ 461
P P M P+G G NG P R P + V P P N N Q
Sbjct: 456 PNPQQM-NPMG---GMPKNGMPPQFRNGPVYGVPPQGGFPRNANDNNQ 499
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/468 (45%), Positives = 288/468 (61%), Gaps = 20/468 (4%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
+ ASLYVGDL P V++ L+D FS S++S+RVC+D+ T S Y YVNF +A
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
IE N+T + G++ RI WS RDP RK G N+F+KNL IDN L + F FG+I+S
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPA 187
K+AT E+GKSKG GFV FE E +A AI+ LNG + + IYV + K+ D L
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETK 215
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A YTNL++KN++S+ T+E E F+KFG I S + +D +G +GFGFVN++ +DA +A
Sbjct: 216 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 275
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
+EA+N S + + LY RAQKK ER +L+ Q+E R E++ KY+G N++VKN+DD V D
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E+L+ F+ GTITSAKVMR E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVA
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Query: 368 IAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVP 418
IAQRK+ R++ L Q++Y Q A ++A + P ++Y PP V
Sbjct: 396 IAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNG 455
Query: 419 PRPGLMYQPLGLRTGWRANGFVPPTR--PAFQVSP---LPVNPKHNRQ 461
P P M P+G G NG P R P + V P P N N Q
Sbjct: 456 PNPQQM-NPMG---GMPKNGMPPQFRNGPVYGVPPQGGFPRNANDNNQ 499
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/442 (46%), Positives = 283/442 (64%), Gaps = 15/442 (3%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P T SLYVGDL DVTD +L+D F++ + SVR+C+D + +S YGYVNF +PHD
Sbjct: 18 PNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHD 77
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A +A++V N T L+ K +RI +S RDP RKSG AN+F+KNL +ID+ L + F FGN
Sbjct: 78 AAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGN 137
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCK+A G SKG+GFVQFE EESA +AI+ LNG + DK +YVG F +K DR
Sbjct: 138 ILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNAL 197
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
AK+ N+++KNL VT++ L F ++G I S ++ RD +G S+ FGFVNF+N D A
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAA 257
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
A+EA+NG K Y +A KK ERE L+ + E+ KE + K+ G+N+Y+KN+DD V
Sbjct: 258 EAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSV 317
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
TDE+L FS+ GT+TS K++RD +GI++G GFV FS+PEEA++A+ +G M+ KPLY
Sbjct: 318 TDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLY 377
Query: 366 VAIAQRKEDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPS-----LYYTTPPGIVSQ 416
VA AQ+KE+R+A L Q++Q MA I P+G P +Y PP +SQ
Sbjct: 378 VAPAQKKEERKARLPAQFSQVRPVTMAPI-APRLPFYPAGVPGMGQQIMYGQAPPAFISQ 436
Query: 417 VPPRPGLMYQPLGLRTGWRANG 438
G Y P L G R G
Sbjct: 437 A----GFGY-PQQLVPGMRPGG 453
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 244/632 (38%), Positives = 359/632 (56%), Gaps = 75/632 (11%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
A ASLYVG+L+P V + LF+ FS ++S+RVC+D+ + +S Y YVN+ D
Sbjct: 46 VAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDG 105
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AIE N+T + G+ RI WS RDP AR+SG N+F+KNL +IDN L + F FG I
Sbjct: 106 EKAIEELNYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKI 165
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLP 184
+SCKVA E G+SK GFV +ET E+A AAIEN+NG + D+ ++VG+ I K DR
Sbjct: 166 LSCKVAADEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFE 225
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A +TN+++KN+D + +EE + F+ +GKI S+ + +D++G S+GFGFVNF+N D A
Sbjct: 226 EMKANFTNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSA 285
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+A+E +N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N++VKN+DD
Sbjct: 286 VKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDA 345
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ E+L+ F GTITSAKVM D+ G +KGFGFVCF++PEEA+KA+ + M++ KPL
Sbjct: 346 IDSEKLEEEFKSFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPL 405
Query: 365 YVAIAQRKEDRQAHLQLQY-AQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQVP 418
YVA+AQRK+ R++ L+ Q A++ ++ ++A +P + P ++Y PP P
Sbjct: 406 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAP 465
Query: 419 ---PRPGLMYQPLG--LRTGWRANGFVPPTRPAFQVSPLPVN--PKHNRQNRGRMNG-NM 470
P P +M + G W RP P+PV P +Q+ NG NM
Sbjct: 466 YPGPNPQMMMRGRGQPFPEQW--------PRPGPNGQPVPVYGIPPQFQQD---FNGQNM 514
Query: 471 LPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMA 530
PQ Q +GG Y PN + NK
Sbjct: 515 RPQQ-----------------QQQQPRGG---YYPN--RNQTNKRD-------------- 538
Query: 531 RKPDMLNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLL 586
L ++++ +QQK+ILGE LYP + + +P+ KITGM+L ++N E+L L
Sbjct: 539 -----LAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDL 593
Query: 587 LESPESLAVKVEEAVQVL---KLSEAKVSTQE 615
L+ E E+A+ K SEA + +E
Sbjct: 594 LDDDELFNNHFEDALTAFEEYKKSEAAGNAEE 625
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 230/595 (38%), Positives = 336/595 (56%), Gaps = 65/595 (10%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
A ASLYVG+L+P V + LF+ FS ++S+RVC+D+ + +S Y YVN+ D
Sbjct: 44 VAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDG 103
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AIE N+T + G+ RI WS RDP AR+SG N+F+KNL +IDN L + F FG I
Sbjct: 104 EKAIEELNYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKI 163
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLP 184
+SCKVAT E G+SK GFV +ET E+A AAIEN+NG + D+ ++VG+ I K DR
Sbjct: 164 LSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFE 223
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A +TN+++KN+D TEE + F+ +GKI S+ + +D++G S+GFGFVNF+ D A
Sbjct: 224 EMKANFTNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAA 283
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+A+E +N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N++VKN+DD
Sbjct: 284 VKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDS 343
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ E+L+ F GTITSAKVM D+ G +KGFGFVCF++PEEA+KA+ + M++ KPL
Sbjct: 344 IDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPL 403
Query: 365 YVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQV 417
YVA+AQRK+ R++ L Q+Q M ++A +P + P ++Y PP
Sbjct: 404 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAGGLPGQFMPPMFYGQQGFFPPNGRGNA 463
Query: 418 P---PRPGLMYQPLG--LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLP 472
P P P +M + G W RP P+PV + P
Sbjct: 464 PFPGPNPQMMMRGRGQPFPEQW--------PRPGPNGQPVPVY-------------GIPP 502
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARK 532
Q + Q+ + + +GG Y PN + NK
Sbjct: 503 QFQQDFNGQNVRPPQQQQQQQ--PRGG---YYPNRN--QTNKRD---------------- 539
Query: 533 PDMLNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSEL 583
L ++A+ +QQK+ILGE LYP + + +P+ KITGM+L ++N E+
Sbjct: 540 ---LAAIIASVPQDQQKRILGEELYPRIVATGKAQEPEAAGKITGMMLGLENQEI 591
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/468 (45%), Positives = 288/468 (61%), Gaps = 20/468 (4%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
+ ASLYVGDL P V++ L+D FS S++S+RVC+D+ T S Y YVNF +A
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
IE N+T + G++ RI WS RDP RK G N+F+KNL IDN L + F FG+I+S
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPA 187
K+AT E+GKSKG GFV FE E +A AI+ LNG + + IYV + K+ D L
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETK 215
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A YTNL++KN++S+ T+E E F+KFG I S + +D +G +GFGFVN++ +DA +A
Sbjct: 216 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 275
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
+EA+N S + + LY RAQKK ER +L+ Q+E R E++ KY+G N++VKN+DD V D
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E+L+ F+ GTITSAKVMR E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVA
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Query: 368 IAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVP 418
IAQRK+ R++ L Q++Y Q A ++A + P ++Y PP V
Sbjct: 396 IAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNG 455
Query: 419 PRPGLMYQPLGLRTGWRANGFVPPTR--PAFQVSP---LPVNPKHNRQ 461
P P M P+G G NG P R P + V P P N N Q
Sbjct: 456 PNPQQM-NPMG---GMPKNGMPPQFRNGPVYGVPPQGGFPRNANDNNQ 499
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/405 (46%), Positives = 265/405 (65%), Gaps = 3/405 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLHP V+D L FSE + S RVC+D T S YGYVNF P A +A+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
V N+ L G+ +RI WS RDP RKSG N+F+KNL +SI+ L + F FG I+SCK+
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
E+G+SKG+GFV FE EE A AIE +N + D+ +YVG+FI K++R + K+
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KN + E L E F++FG+I S + +D G S+GFGFV F +PD A A++ M
Sbjct: 193 NLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTM 252
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYK-GSNVYVKNIDDDVTDEEL 310
+G I + LY ARAQ+K ER++ L+ + E++R ER Y N+YVKN+DD++ D+ L
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ FS G+ITSAKVM+D +KGFGFVCF++PE+A++AV +G ++ KPLYVA+AQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVIPS--GYPSLYYTTPPGI 413
RKEDR+A L ++ Q MA A++IP+ G+ + + PP
Sbjct: 373 RKEDRRAKLIEEHQQRMAQYRNPVASMIPAVPGHAAPHSFFPPAF 417
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
LA S E QK+ LGE LYP ++ P+L K+TGMLL +DN+E++ LLES E L KV
Sbjct: 624 LAQLSEEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGVDNAEVINLLESEELLRAKV 681
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/410 (48%), Positives = 268/410 (65%), Gaps = 9/410 (2%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
++ T ASLYVGDLHPDV + LF+ FS + S+RVC+D+ T S Y YVNF P DA
Sbjct: 27 SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADA 86
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
RA++ N LHGK +RI WS RDP R+SG N+F+KNL + IDN + + F FGNI
Sbjct: 87 ERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNI 146
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS--DRVLP 184
+SCKVA EDG SKG+GFV FETEE+A AI+ +NG + K+++VG+F ++ +R L
Sbjct: 147 LSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELG 206
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A ++TN+++KN +E L + F+KFG I S + E G S+GFGFV F NP++A
Sbjct: 207 ETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEA 265
Query: 245 RRALEAMNGSVI-GSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
A++A++ S I G+ + L+ RAQKK+ER L+ + E+ + ER+ KY+G N+YVKN+D
Sbjct: 266 ETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLD 325
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ V D+ LK F G ITSAKVM DE G +KGFGFVCF PEEA+ AV + M+ K
Sbjct: 326 ETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSK 385
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG 412
PLYVAI QRKEDR+A L QY Q +A + +P ++Y T PG
Sbjct: 386 PLYVAIGQRKEDRRAQLASQYMQRVASMRMHGN--VPGA--AMYNPTQPG 431
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL--VAKITGMLLEMDNSEL 583
G V+ + + + MLAA +P++QKQ+LGER+Y L+EK P KITGM+LE+DNSEL
Sbjct: 560 GIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSEL 619
Query: 584 LLLLESPESLAVKVEEAVQVL 604
+++L+ E KV+EA VL
Sbjct: 620 IMMLQDSELFRSKVDEAASVL 640
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 243/628 (38%), Positives = 354/628 (56%), Gaps = 66/628 (10%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
A ASLYVG+L+P V + LF+ FS ++S+RVC+D+ + +S Y YVN+ D
Sbjct: 56 VAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDG 115
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI+ N++ + + RI WS RDP AR+SG N+F+KNL +IDN L + F FG I
Sbjct: 116 EKAIDELNYSLIENRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRI 175
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLP 184
+SCKVAT + G+SK GFV +ET E+A AAIEN+NG + D+ +YVG+ + K DR
Sbjct: 176 LSCKVATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKDRESKFE 235
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A YTN+++KN+D + +E+ + F+ +GKI S+ + +D++G S+GFGFVN++ A
Sbjct: 236 EMKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSA 295
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
A+EA+N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N++VKN+DD
Sbjct: 296 VEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFVKNLDDQ 355
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ E+L+ F GTITSAKVM D+ G ++GFGFVCFS+PEEA+KA+ + M++ KPL
Sbjct: 356 IDSEKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQRMVNGKPL 415
Query: 365 YVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQV 417
YVA+AQRK+ R++ L Q+Q M ++A P + P +YY PPG
Sbjct: 416 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAAGFPGQFMPPMYYGQQGFFPPGGRGNA 475
Query: 418 P---PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQV 474
P P P +M +R G P +P + P P P NG +P
Sbjct: 476 PFPGPNPQMM-----MRRGQ-------PGQPFPEQWPRPGGP----------NGQPVPVY 513
Query: 475 GAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPD 534
G Q A + QQ+G Y P GV D
Sbjct: 514 GIP--PQFPDQRAQQQQQQQQQRG----YYP------------------GQAGVKVPAKD 549
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLESP 590
L ++++ PEQQK+ILGE LYP + + +P+ KITGM+L ++N E+L LL+
Sbjct: 550 -LAAIISSVPPEQQKRILGEELYPRIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDD 608
Query: 591 ESLAVKVEEAV---QVLKLSEAKVSTQE 615
E E+A+ + K SEA V+ E
Sbjct: 609 ELFNNHFEDALTAYEEYKKSEAGVAANE 636
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/405 (46%), Positives = 265/405 (65%), Gaps = 3/405 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLHP V+D L FSE + S RVC+D T S YGYVNF P A +A+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
V N+ L G+ +RI WS RDP RKSG N+F+KNL +SI+ L + F FG I+SCK+
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
E+G+SKG+GFV FE EE A AIE +N + D+ +YVG+FI K++R + K+
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KN + E L E F++FG+I S + +D G S+GFGFV F +PD A A++ M
Sbjct: 193 NLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTM 252
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYK-GSNVYVKNIDDDVTDEEL 310
+G I + LY ARAQ+K ER++ L+ + E++R ER Y N+YVKN+DD++ D+ L
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ FS G+ITSAKVM+D +KGFGFVCF++PE+A++AV +G ++ KPLYVA+AQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVIPS--GYPSLYYTTPPGI 413
RKEDR+A L ++ Q MA A++IP+ G+ + + PP
Sbjct: 373 RKEDRRAKLIEEHQQRMAQYRNPVASMIPAVPGHAAPHSFFPPAF 417
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 47/69 (68%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
LA S E QK+ LGE LYP ++ P+L K+TGMLL +DN+E++ LLES E L K EE
Sbjct: 624 LAQLSEEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGVDNAEVINLLESEELLRAKCEE 683
Query: 600 AVQVLKLSE 608
+ VL+ S+
Sbjct: 684 GINVLRSSQ 692
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/405 (46%), Positives = 265/405 (65%), Gaps = 3/405 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLHP V+D L FSE + S RVC+D T S YGYVNF P A +A+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
V N+ L G+ +RI WS RDP RKSG N+F+KNL +SI+ L + F FG I+SCK+
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
E+G+SKG+GFV FE EE A AIE +N + D+ +YVG+FI K++R + K+
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KN + E L E F++FG+I S + +D G S+GFGFV F +PD A A++ M
Sbjct: 193 NLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTM 252
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYK-GSNVYVKNIDDDVTDEEL 310
+G I + LY ARAQ+K ER++ L+ + E++R ER Y N+YVKN+DD++ D+ L
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ FS G+ITSAKVM+D +KGFGFVCF++PE+A++AV +G ++ KPLYVA+AQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVIPS--GYPSLYYTTPPGI 413
RKEDR+A L ++ Q MA A++IP+ G+ + + PP
Sbjct: 373 RKEDRRAKLIEEHQQRMAQYRNPVASMIPAVPGHAAPHSFFPPAF 417
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 47/69 (68%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
LA S E QK+ LGE LYP ++ P+L K+TGMLL +DN+E++ LLES E L K EE
Sbjct: 622 LAQLSEEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGVDNAEVINLLESEELLRAKCEE 681
Query: 600 AVQVLKLSE 608
+ VL+ S+
Sbjct: 682 GINVLRSSQ 690
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 240/629 (38%), Positives = 357/629 (56%), Gaps = 68/629 (10%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
A ASLYVG+L+P V + LF+ FS ++S+RVC+D+ + +S Y YVN+ D
Sbjct: 47 VAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDG 106
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AIE N+ + G+ RI WS RDP AR+SG N+F+KNL +IDN L + F FG I
Sbjct: 107 EKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKI 166
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLP 184
+SCKVAT E G+SK GFV +ET E+A AAIEN+NG + D+ ++VG+ I K DR
Sbjct: 167 LSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFE 226
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A +TN+++KN+D + +EE + FS FGKI S+ + +D++G S+GFGFVNF++ + A
Sbjct: 227 EMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESA 286
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+A+E +N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N++VKN+DD
Sbjct: 287 VKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDT 346
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ E+L+ F GTITSAKVM DE G +KGFGFVCF++PEEA+KA+ + M++ KPL
Sbjct: 347 IDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPL 406
Query: 365 YVAIAQRKEDRQAHLQLQY-AQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQVP 418
YVA+AQRK+ R++ L+ Q A++ ++ ++A +P + P ++Y PP P
Sbjct: 407 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAAGGLPGQFIPPMFYGQQGFFPPNGRGNAP 466
Query: 419 ---PRPGLMYQPLG--LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ 473
P P +M + G W RP P+PV + PQ
Sbjct: 467 YPGPNPQMMMRGRGQPFPEQW--------PRPGPNGQPVPVY-------------GIPPQ 505
Query: 474 VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP 533
+ + Q+ + Q +GG Y PN N+ S L
Sbjct: 506 FQQDF---NGQNMRPQQQQQQQPRGG---YYPN-----RNQTSKRDLAA----------- 543
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLES 589
++++ +QQK+ILGE LYP + + +P+ KITGM+L ++N E+L LL+
Sbjct: 544 -----IISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDD 598
Query: 590 PESLAVKVEEAVQVL---KLSEAKVSTQE 615
E E+A+ K SEA + +E
Sbjct: 599 DELFNNHFEDALTAFEEYKKSEAAGNAEE 627
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 219/519 (42%), Positives = 296/519 (57%), Gaps = 72/519 (13%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P+A P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 104 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 163
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 164 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 223
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
A +TN+++KN+D +VT+E + F KFG+I S ++RD+ G SRGFGFVNF
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTH 283
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
D A+ A++ MN I + LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+
Sbjct: 284 DSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 343
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEK------------------------------- 330
DDV DE+L+ FS GTITSAKVMRD
Sbjct: 344 TDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPK 403
Query: 331 --------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQ 376
G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+ R+
Sbjct: 404 ESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 463
Query: 377 AHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY------------------TTPPGIV 414
+ L+ +Q + + ++A +P Y P+++Y PG+V
Sbjct: 464 SQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGMV 523
Query: 415 SQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL 452
+P RPG P + G R G P FQ P+
Sbjct: 524 MGIPGGRPGQYPGPFPGQQGGRGMGPNQQIPPNFQGIPM 562
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/453 (44%), Positives = 277/453 (61%), Gaps = 21/453 (4%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T+ ASLYVG+L P V++ L+D FS S++S+RVC+D+ T S Y YVNF
Sbjct: 30 TPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDH 89
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
+AIE N+T + GK RI WS RDP RK G N+++KNL +IDN L E F F
Sbjct: 90 EAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTF 149
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVAT E+G S+G GFV FE E A AIE ++G + D+ +YV + K DR
Sbjct: 150 GNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQS 209
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L AK+TN+++KN+D + ++E E F K+GKI S ++ +D G RGFGFVNF++
Sbjct: 210 KLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDH 269
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
A +A++ +N + LY RAQKK ER Q L+ Q+E R E++ KY+G N++VKN+
Sbjct: 270 AAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNL 329
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE+LK F+ GTITSAKVMRDE G ++GFGFVCFS+PEEA+KA+ + ++
Sbjct: 330 DDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAG 389
Query: 362 KPLYVAIAQRKEDR--------QAHLQLQYAQHMAGIEGSSANVIPSGY--PSLYYTTPP 411
KPLYVAIAQRKE R QA Q+++ QH ++ +P + P +YY P
Sbjct: 390 KPLYVAIAQRKEVRRNQLAQQIQARNQMRF-QHANAAAAAAVAGLPGQFMPPPMYYGGIP 448
Query: 412 GIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTR 444
V P P + G NG +PP +
Sbjct: 449 PRVPFQGPNPQM--------AGMPKNGAMPPQQ 473
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 219/521 (42%), Positives = 297/521 (57%), Gaps = 74/521 (14%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P+A+ P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 104 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 163
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 164 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 223
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
A +TN+++KN+D +VT+E + F KFG+I S ++RD+ G SRGFGFVNF
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTH 283
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
D A+ A++ MN I + LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+
Sbjct: 284 DSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 343
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEK------------------------------- 330
DDV DE+L+ FS GTITSAKVMRD
Sbjct: 344 TDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEK 403
Query: 331 ----------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED 374
G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+
Sbjct: 404 PKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 463
Query: 375 RQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY------------------TTPPG 412
R++ L+ +Q + + ++A +P Y P+++Y PG
Sbjct: 464 RRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPG 523
Query: 413 IVSQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL 452
+V +P RPG P + G R G P FQ P+
Sbjct: 524 MVMGIPGGRPGQYPGPFPGQQGGRGMGPNQQIPPNFQGIPM 564
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/458 (43%), Positives = 285/458 (62%), Gaps = 11/458 (2%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
A ASLYVG+L+P V + LF+ FS ++S+RVC+D+ T +S Y YVN+ D
Sbjct: 58 VAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDG 117
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI+ N++ + G+ RI WS RDP AR+SG N+F+KNL +IDN L + F FG I
Sbjct: 118 EKAIDELNYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRI 177
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLP 184
+SCKVAT + G+SK GFV +ET E+A AAIEN+NG + D+ ++VG+ + K DR
Sbjct: 178 LSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFE 237
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A YTN+++KN+D TE+ E F+ +GKI S+ + +D++G S+GFGFVN++ A
Sbjct: 238 EMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSA 297
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
A+EA+N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N+++KN+DD
Sbjct: 298 VDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLDDQ 357
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ E+L+ F GTITSAKVM D+ G +KGFGFVCFS+PEEA+KA+ + M++ KPL
Sbjct: 358 IDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMINGKPL 417
Query: 365 YVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQV 417
YVA+AQRK+ R++ L Q+Q M ++A P + P +YY PPG
Sbjct: 418 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAGGFPGQFMPPMYYGQQGFFPPGGRGNA 477
Query: 418 PPRPGLMYQPLGLRTGWRANGFVPP-TRPAFQVSPLPV 454
P PG Q + +R G F RP P+PV
Sbjct: 478 APFPGPNPQ-MMMRRGQPGQPFPEQWPRPGPNGQPVPV 514
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/409 (46%), Positives = 264/409 (64%), Gaps = 12/409 (2%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVG+L P VT+ LF+ FS +AS+RVC+D+ T +S Y YVN+ + D +A+E
Sbjct: 80 SLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKALEE 139
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N++ + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FG I+SCKVA
Sbjct: 140 LNYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGTILSCKVA 199
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKY 190
E G SKG+GFV F + +SANAAIE++NG + DK++YVG + + DR + A +
Sbjct: 200 LDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRRDRQSKFEAMKANF 259
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN+++KN+D +VT+E F KFG I S + +DE+G RGFGFVNF++ + A++A++
Sbjct: 260 TNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDE 319
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
MN K LY RAQK+ ERE LR ++E+ + E++ KY+G N+++KN+ D+V D L
Sbjct: 320 MNDYEFHGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLL 379
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
K FS GTITSAKVM DE G +KGFGFVC+SSPEEA+KA+ + ML KPLYVA+AQ
Sbjct: 380 KTEFSAFGTITSAKVMTDENGKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVALAQ 439
Query: 371 RKEDRQAHLQLQY-------AQHMAGIEGSSANVIPSGYPSLYYTTPPG 412
RK+ R++ L+ Q Q G SA G P Y P G
Sbjct: 440 RKDVRRSQLEAQIQARNQFRMQQQVAAAGMSAQF---GIPGAMYYGPGG 485
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 104/195 (53%), Gaps = 17/195 (8%)
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDAR 245
A K T+L++ LD VTE L E FS G +AS+ + RD S G+ +VN+ N DD
Sbjct: 75 APKNTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGE 134
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+ALE +N S+I + +I+ Q R + K N+++KN+D +
Sbjct: 135 KALEELNYSLIKGRAC------------RIMWSQ----RDPSLRKTGTGNIFIKNLDPAI 178
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
++ L FS GTI S KV DE G +KG+GFV F+S + A+ A+ +G +L+ K +Y
Sbjct: 179 DNKALHDTFSAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVY 238
Query: 366 VAIAQRKEDRQAHLQ 380
V + DRQ+ +
Sbjct: 239 VGHHVSRRDRQSKFE 253
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 50/66 (75%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
+A +PE QKQILGE YPL+ + + +L KITGMLLEMDN+ELL L++ E+L KV+E
Sbjct: 566 FSAETPENQKQILGEYFYPLIAQREAELAGKITGMLLEMDNAELLGLVQDIEALNGKVDE 625
Query: 600 AVQVLK 605
A+ VLK
Sbjct: 626 ALSVLK 631
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/386 (48%), Positives = 262/386 (67%), Gaps = 6/386 (1%)
Query: 2 AVVPPTATTPA------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCY 55
AVV P A A SLYVGDL V+D +L++ FS+ + SVRVC+D T+ RS Y
Sbjct: 18 AVVSPGAVGVAQPLPTTSLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGY 77
Query: 56 GYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVR 115
YVN+ +P DA RA+EV N L+ K +R+ +S RDP +R+SG AN+F+KNL ++IDN
Sbjct: 78 AYVNYSNPLDAARALEVLNFAALNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKT 137
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L E F +FG I+SCKVA E G+SKG GFVQ++ EE+A AI++LNG + DK ++VG F
Sbjct: 138 LHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFVGPF 197
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF 235
++K +R K+ N+F+KNL T+E L++ F ++G I S ++ +G SR FGF
Sbjct: 198 VRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGF 257
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN 295
+NF+NPD A A++ +NG I K Y RAQKK+ERE L+ +FE+ K+ KY+G N
Sbjct: 258 INFENPDAASHAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLN 317
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
+Y+KN+DD + D++L FS G ITS KVMRD+ G++KG GFV FS+ EEAS+A+ +
Sbjct: 318 LYLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMN 377
Query: 356 GYMLHRKPLYVAIAQRKEDRQAHLQL 381
G M+ KPLYVA AQRKEDR+A LQ+
Sbjct: 378 GKMISGKPLYVAFAQRKEDRKAMLQV 403
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 159/290 (54%), Gaps = 21/290 (7%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAAI 157
+L+V +L ++ + +L E+F G ++S C+ TS +S G+ +V + A A+
Sbjct: 35 SLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSR--RSLGYAYVNYSNPLDAARAL 92
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + +K I V S+R S + N+F+KNLD + + L E FS FG I
Sbjct: 93 EVLNFAALNNKPIRV----MYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTI 148
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G S+GFGFV +D + A+ A++++NG +I K ++ +K ER+
Sbjct: 149 LSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFVGPFVRKQERD---- 204
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
H F+ K K +NV+VKN+ + T E+L F + G ITSA VM G ++ FG
Sbjct: 205 HSFD--------KTKFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFG 256
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHM 387
F+ F +P+ AS AV +G ++ K YV AQ+K +R+ L+ ++ Q +
Sbjct: 257 FINFENPDAASHAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSL 306
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/386 (48%), Positives = 264/386 (68%), Gaps = 10/386 (2%)
Query: 8 ATTP---ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF---L 61
A+TP +SLYVGDL DVT+ +LF+ FS +AS+RVC+D+ T RS Y YVN+ L
Sbjct: 16 ASTPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSAL 75
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
P A RA+E N+ ++GK +RI WS RDP ARKSGV N+F+KNL ++ID L + F
Sbjct: 76 DPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFS 135
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FG I+SCKVAT +G SKG+GFV FE + +A+ AI+ +N + K +YVG F K++DR
Sbjct: 136 AFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADR 195
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
P YTN+F+KNL +D+ ++ L + ++ G+I S ++ +D+ G S+GFGF+NF +
Sbjct: 196 ----PQDVYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDA 251
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+ A + +E +N + K LYA RAQKK ERE +LR + EE ++ER LKY+G N+YVKN+
Sbjct: 252 ESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNL 311
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
D+V D+ L+ F+ GTITS KVM+D G +KGFGFVCF+S +EA++AV +G M+
Sbjct: 312 SDEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKG 371
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHM 387
KPLYVA+AQRK+ R+A L+ M
Sbjct: 372 KPLYVALAQRKDVRRAQLEANMQARM 397
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 545 PEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
PEQQK ++GERLYP V + +PDL KITGMLLEMDN+ELL+LLES E+L KV+EA+ VL
Sbjct: 565 PEQQKMMIGERLYPQVAELQPDLAGKITGMLLEMDNAELLMLLESHEALVSKVDEAIAVL 624
Query: 605 K 605
K
Sbjct: 625 K 625
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 235/614 (38%), Positives = 331/614 (53%), Gaps = 73/614 (11%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVG+L+P V + LF+ FS ++S+RVC+D+ T +S Y YVNF D RAIE
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N++ + G+ RI WS RDP R++G N+F+KNL +IDN L + F FG I+SCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAKYT 191
E G+SK GFV +ET E+A AAIEN+NG + D+ ++VG+ + K DR A +T
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL +V E F FG + S+ + D+ G SRGFGFVNF+N + A A++ M
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N I + LY RAQKK ER L+ +E R E++LKY+G N++VKN+DD + E+L+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGVNLFVKNLDDSIDSEKLE 359
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F GTITSA+VM D+ G +KGFGFVCFSSPEEA+KA+ + M+ KPLYVA+AQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 372 KEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVPPRPGLMYQP 427
K+ R++ L Q+Q M ++A +P + P Y P
Sbjct: 420 KDVRRSQLEQQIQARNQMRMQNAAAAAGMPGQFMLPMFYGQQP----------------- 462
Query: 428 LGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRM------------NGNMLPQVG 475
GF PP P P NP+ G+M NG +P G
Sbjct: 463 ----------GFFPPNGRGGAQGPFPPNPQMMMPRGGQMPPPQGQWPRAGPNGQPVPVYG 512
Query: 476 AHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM 535
M + + QQ+G Y PN + GG R
Sbjct: 513 ---MPPVYGGEFNGPNGQRQQRGA---YPPNRNQK---------------GGRPQRD--- 548
Query: 536 LNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
L +++ +QQK+ILGE LYP + + +P+ KITGM+L+++N E+L LLE E
Sbjct: 549 LAAIISTVPVDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDE 608
Query: 592 SLAVKVEEAVQVLK 605
E+A+ +
Sbjct: 609 LFENHFEDALTAFE 622
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/375 (50%), Positives = 255/375 (68%), Gaps = 3/375 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DV + LFD FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP R+SGV N+F+KNL +IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
AT E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 122 ATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D +E L E F +GKI S + E+G S+GFGFV F+ + A A++
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G K LY ARAQKKAER+Q L+ +FEE +++R G N+YVKN+DD + D+
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDD 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS G ITSAKVM DE+G +KGFGFVCF++ EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQY 383
AQRKE+R+AHL QY
Sbjct: 362 AQRKEERKAHLASQY 376
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 156/289 (53%), Gaps = 16/289 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + ++ L + F + G ++S +V +S G+ +V F+ A A+
Sbjct: 1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N V +K I I S R + N+F+KNLD + + + + FS FG I
Sbjct: 61 DTMNFDLVRNKPIR----IMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G S+G+GFV+F+ + A +++ +NG ++ K +Y + + ERE+ L
Sbjct: 117 LSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG 176
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
K ++ +NVYVKN +D DE+LK F G ITS KVM E G +KGFG
Sbjct: 177 E------KAKLF----TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFG 226
Query: 338 FVCFSSPEEASKAVNTFHGY-MLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F + E A AV +G M K LYVA AQ+K +RQ L+ ++ +
Sbjct: 227 FVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEE 275
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 238/620 (38%), Positives = 339/620 (54%), Gaps = 53/620 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y +
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRMERQNELKRRFEQMKQDRLRRY-----------------Q 292
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L +QC + V R E + F P A+ AV +G ++ KPLYVA+A
Sbjct: 293 LSRGPAQCW---AWPVGRREAAQPQEPSF-----PTPAALAVTEMNGRIVGTKPLYVALA 344
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ + VP P
Sbjct: 345 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF------LPAVPQPPA------ 392
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
+ + G V PT+PA + + P P R + + Q S+Q +
Sbjct: 393 --QAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRPPVVPRRPLAPISSVRQASTQVPRT 450
Query: 489 SKDSSNQQKGGQSKYVPN-------GRIRELNKGSGVSLGTFNSGGVMARKPD---MLNG 538
+ G P GR K S + T+ P +
Sbjct: 451 VPHTQRVANIGTQTTGPGGVGCCTPGRPLLPYKCSPAAHSTYRVQEPAVHIPGQEPLTAS 510
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K++
Sbjct: 511 MLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKID 570
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV VL+ +A + +H
Sbjct: 571 EAVAVLQAHQAVEQPKAYMH 590
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 154/288 (53%), Gaps = 16/288 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I I S R + N+F+KNL+ + + L + FS FG I
Sbjct: 70 DTMNFEMLKGQPIR----IMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE+G SRGFGFV+F+ + A++A+ MNG ++ + ++ + + ERE L
Sbjct: 126 LSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAEL- 183
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
R L++ +N+YVKN+ DV ++ L+ FSQ G + S KVMRD G ++ FG
Sbjct: 184 -------GARALEF--TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F EEA KAV +G + + LY AQ++ +RQ L+ ++ Q
Sbjct: 235 FVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRMERQNELKRRFEQ 282
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/425 (45%), Positives = 281/425 (66%), Gaps = 10/425 (2%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVG+L P VT+ LF+ FS ++AS+RVC+D+ T RS Y YVNFL+ D RA+E
Sbjct: 48 SLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N++ + + RI WS RDP R++G N+F+KNL IDN L + F FGNI+SCKVA
Sbjct: 108 LNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVA 167
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKY 190
T+E G S G+GFV +ET E+A AAI+++NG + DK++YVG I + +R + A +
Sbjct: 168 TNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANF 226
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN++ KN+D +VT++ + F+KFGKI S ++ RDE+G S+GFGFVNF++ ++A++A++
Sbjct: 227 TNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDE 286
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++ S + L+ ARAQKK+ERE+ LR +E + E++ K++G N+Y+KNI + DE L
Sbjct: 287 LHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERL 346
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ G ITS K+MR G+++GFGFVC+S+PEEA+KAV+ +G ML +PLYVA+AQ
Sbjct: 347 REEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQ 406
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY--PSLYYTTP---PGIVSQVPPRPGLMY 425
RK+ R+ L+ Q Q A GY P +YY P PG + PRP Y
Sbjct: 407 RKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMYYPQPGAFPGQPGGMVPRP--RY 464
Query: 426 QPLGL 430
P G+
Sbjct: 465 APAGM 469
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 208/468 (44%), Positives = 288/468 (61%), Gaps = 20/468 (4%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
+ ASLYVGDL P V++ L+D FS S++S+RVC+D+ T S Y YVNF +A
Sbjct: 36 SSASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
I+ N+T + G++ RI WS RDP RK G N+F+KNL IDN L + F FG+I+S
Sbjct: 96 IDQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPA 187
K+AT E+GKSKG GFV FE E +A AI+ LNG + + IYV + K+ D L
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETK 215
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A YTNL++KN++S+ T+E E F++FG I S + +D +G +GFGFVN++N +DA +A
Sbjct: 216 AHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKA 275
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
+EA+N S + + LY RAQKK ER +L+ Q+E R E++ KY+G N++VKN+DD V D
Sbjct: 276 VEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E+L+ F+ GTITSAKVMR E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVA
Sbjct: 336 EKLEEEFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Query: 368 IAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVP 418
IAQRK+ R++ L Q++Y Q A ++A + P ++Y PP V
Sbjct: 396 IAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNG 455
Query: 419 PRPGLMYQPLGLRTGWRANGFVPP--TRPAFQVSP---LPVNPKHNRQ 461
P P + P+G G NG P P + V P P N N Q
Sbjct: 456 PNPQQI-NPMG---GMPKNGMPPQFGNAPVYGVPPQGGFPRNANDNNQ 499
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 235/601 (39%), Positives = 334/601 (55%), Gaps = 47/601 (7%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVG+L+P V + LF+ FS ++S+RVC+D+ T +S Y YVNF D RAIE
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N++ + G+ RI WS RDP R++G N+F+KNL +IDN L + F FG I+SCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAKYT 191
E G+SK GFV +ET E+A AAIEN+NG + D+ ++VG+ + K DR A +T
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL +V E F FG + S+ + D+ G SRGFGFVNF+N + A A++ M
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N I + LY RAQKK ER L+ +E R E++ KY+G N++VKN+DD + E+L+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F GTITSA+VM D+ G +KGFGFVCFSSPEEA+KA+ + M+ KPLYVA+AQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 372 KEDRQAHL--QLQYAQHMAGIEGSSANVIPSGYPS-LYYTTPPGIVSQVPPRPGLMYQPL 428
K+ R++ L Q+Q M ++A +P + S ++Y PG + P
Sbjct: 420 KDVRRSQLEQQIQARNQMRMQNAAAAAGMPGQFMSPMFYGQQPGF-----------FPPN 468
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
G R G A G PP + P + R NG +P G M +
Sbjct: 469 G-RGG--AQGPFPPNPQMMMPRGGQMPPPQGQWPRAGPNGQPVPVYG---MPPVYGGEFN 522
Query: 489 SKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQ 548
+ QQ+G Y PN + GG R L +++ +QQ
Sbjct: 523 GPNGQRQQRGA---YPPNRNQK---------------GGRPQRD---LAAIISTVPVDQQ 561
Query: 549 KQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
K+ILGE LYP + + +P+ KITGM+L+++N E+L LLE E E+A+
Sbjct: 562 KRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDELFENHFEDALTAF 621
Query: 605 K 605
+
Sbjct: 622 E 622
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 232/604 (38%), Positives = 341/604 (56%), Gaps = 67/604 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P+VT+ L++ F+ +AS+RVC+DS T +S Y YVN+ + DA A+E
Sbjct: 36 ASLYVGNLLPEVTEAMLYEVFNGIGPVASIRVCRDSLTRKSLGYAYVNYYNFQDAEAALE 95
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ ++ G+ RI WS RDP RKSG N+FVKNL ++ID L + F +FG I+SCKV
Sbjct: 96 CLNYIEIKGQPARIMWSERDPSLRKSGTGNIFVKNLDKAIDTKALYDTFSHFGTILSCKV 155
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A G SKG+GFV + TEESA AIE +NG +G+ ++ V F+++++R + +T
Sbjct: 156 AIDSLGNSKGYGFVHYTTEESAKEAIEKVNGMLIGNSQVSVAPFLRRNERT-STVGDVFT 214
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL+++N TE+ L + FSK+G+I SLL+ D+ G R F FVNF + + A+ A+E
Sbjct: 215 NLYVRNFPDTWTEDDLHQTFSKYGEITSLLLKSDDKG--RRFAFVNFVDTNMAKAAMEGE 272
Query: 252 NGSVIGS--KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
NG S + + + KA R +L+ Q++ +++ K+ G N+Y+KN+DDD D+
Sbjct: 273 NGVKFESVEEPMMVCQHMDKARRYAMLKAQYDSNAQDQRNKFMGVNLYIKNLDDDFDDDG 332
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F Q GT+TS+KVMRD G+++GFGFVCFS P+EA+KAV H ++ KPLYV +A
Sbjct: 333 LRDLFKQYGTVTSSKVMRDHNGVSRGFGFVCFSRPDEATKAVAGMHLKLVKNKPLYVGLA 392
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
+++E R + +Q + Q+ G GY LY PP +V Q G +G
Sbjct: 393 EKREQRASRMQQRNRQNDMMQYGDR-----PGYVPLY---PPEMVPQ-----GYFNHQVG 439
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASS 489
R PT PA P+ V P+ R + P H +S AA+
Sbjct: 440 FR----------PTVPA---QPMGVGPRGMRM--------VAPMPMMHGRGTASPHAAA- 477
Query: 490 KDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQ- 548
Q + K VP L F + ++ NG AA P Q+
Sbjct: 478 -----QGRRTPVKQVP--------------LSGFKFTAQARNRTELPNGAPAAAVPTQRP 518
Query: 549 -------KQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAV 601
KQ++GERL+P+V + P+L KITGM+LEMDN EL+ LLE+ + L K++EA+
Sbjct: 519 IDGAAMHKQMIGERLFPIVARENPELAGKITGMMLEMDNQELMALLENEQQLKDKIQEAM 578
Query: 602 QVLK 605
+VLK
Sbjct: 579 RVLK 582
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 218/511 (42%), Positives = 297/511 (58%), Gaps = 74/511 (14%)
Query: 3 VVPPTA-----TTP-------ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTG 50
VVP TA TTP ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T
Sbjct: 29 VVPDTAASDAATTPNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR 88
Query: 51 RSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIES 110
RS Y YVN+ + D RA+E N+T + G+ RI WS RDP RK+G N+F+KNL +
Sbjct: 89 RSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTA 148
Query: 111 IDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
IDN L + F FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK++
Sbjct: 149 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 208
Query: 171 YVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG 228
+VG I K DR A +TN+++KN+D +VT+E E F KFG I S I+RD++G
Sbjct: 209 FVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSG 268
Query: 229 TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
SRGFGFVN+ + ++A+ A++ +N + LY RAQKK ERE+ LR Q+E R E+
Sbjct: 269 KSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKA 328
Query: 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI---------------- 332
KY+G N+YVKN+ DDV DE+L+ FS GTITSAKVMRD G
Sbjct: 329 SKYQGVNLYVKNLTDDVDDEKLRELFSAFGTITSAKVMRDTVGAGSDSEKEETKESSEEV 388
Query: 333 ------------------------------NKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+KGFGFVCFSSP+EASKAV + M++ K
Sbjct: 389 EEPKEEETNAKTEDEDKTDAKKSDKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGK 448
Query: 363 PLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTP-----PGI 413
PLYVA+AQRK+ R++ L+ +Q + + ++A +P Y P+++Y PG
Sbjct: 449 PLYVALAQRKDVRKSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFLPGN 508
Query: 414 VSQ----VPPRPGLMYQPL-GLRTGWRANGF 439
Q P+PG++ + G R G GF
Sbjct: 509 AGQRGMAFAPQPGMVMAGIPGGRPGQYPGGF 539
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L + AAP P+QQKQ+LGE LYP ++ +P+L KITGMLLEMDN+ELL L++ +L
Sbjct: 651 LQALTAAP-PQQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLIDDESALRA 709
Query: 596 KVEEAVQV 603
KV+EA+ V
Sbjct: 710 KVDEALHV 717
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 279/425 (65%), Gaps = 10/425 (2%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVNFL+ D RA+E
Sbjct: 48 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N++ + + RI WS RDP R++G N+F+KNL IDN L + F FGNI+SCKVA
Sbjct: 108 LNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVA 167
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKY 190
T++ G S G+GFV +ET E+A AAI+++NG + DK++YVG I + +R + A +
Sbjct: 168 TNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRANF 226
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN++ KN+D DVT+E + F+++GKI S ++ RD++G S+GFGFVNF++ ++A+ A++
Sbjct: 227 TNVYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVDE 286
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++ S + L+ ARAQKK+ERE+ LR +E + E++ K++G N+Y+KNI + DE L
Sbjct: 287 LHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERL 346
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ G ITS K+MR G+++GFGFVC+S PEEA+KAV+ +G ML +PLYVA+AQ
Sbjct: 347 REEFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQ 406
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY--PSLYYTTP---PGIVSQVPPRPGLMY 425
RK+DR+ L+ Q Q A GY P +YY P PG + PRP Y
Sbjct: 407 RKDDRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMYYPQPGAFPGQPGGMMPRP--RY 464
Query: 426 QPLGL 430
P G+
Sbjct: 465 APAGM 469
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 190/388 (48%), Positives = 262/388 (67%), Gaps = 5/388 (1%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P + ASLYV DLHPDVT+ LF FS + SVRVC+D T RS Y YVNF P D
Sbjct: 4 PVSPAVASLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPAD 63
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++ N + G+ +RI+W RDP RKSGV N+F+K L +SIDN L + F FGN
Sbjct: 64 AERALDTMNFDIIKGRPIRITWYQRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGN 123
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VL 183
I SCK+ E G S+G+GFV FET+E+A AIE +NG + K+++VGRF+ + +R VL
Sbjct: 124 ISSCKIVCDEHG-SRGYGFVHFETDEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVL 182
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG-TSRGFGFVNFDNPD 242
K+ N+++KNL + +E L E F +GKI S + D++ S+ FGFV+F+NP+
Sbjct: 183 DLGMRKFNNVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPE 242
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
A++A+EA+NG+ K+LY RAQ K ER+ L+ +FE RKERI +Y+G N++VKN+D
Sbjct: 243 AAKKAVEALNGNDNAGKILYVGRAQTKIERQAELKEKFERIRKERINRYQGVNLFVKNLD 302
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
D++ D+ L+ F+Q GTITSAKVM E G +KGFGFV FSSPEEA+KA+ + ++ +
Sbjct: 303 DNIDDKRLRKEFAQFGTITSAKVM-TENGRSKGFGFVYFSSPEEATKAIVEMNEKIIEAR 361
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
PLYVA+AQRKEDR+A+L L Q + +
Sbjct: 362 PLYVALAQRKEDRKAYLALLNMQRITSM 389
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 280/425 (65%), Gaps = 10/425 (2%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVNFL+ D RA+E
Sbjct: 46 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 105
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N++ + + RI WS RDP R++G N+F+KNL IDN L + F FGNI+SCKVA
Sbjct: 106 LNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVA 165
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKY 190
T++ G S G+GFV +ET E+A AAI+++NG + DK++YVG I + +R + AK+
Sbjct: 166 TNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAKF 224
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN++ KN+D +VT+E + F+ +GKI S ++ RD++G S+GFGFVNF++ ++A++A++
Sbjct: 225 TNVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDE 284
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++ S + L+ ARAQKK+ERE+ LR +E + E++ K++G N+Y+KNI + DE L
Sbjct: 285 LHDSDFHGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERL 344
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ GTITS K+MR G+++GFGFVC+S PEEA+KAV+ +G ML +PLYVA+AQ
Sbjct: 345 REEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQ 404
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY--PSLYYTTP---PGIVSQVPPRPGLMY 425
RK+ R+ L+ Q Q A GY P +YY P PG + PRP Y
Sbjct: 405 RKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMYYPQPGAFPGQPGGMVPRP--RY 462
Query: 426 QPLGL 430
P G+
Sbjct: 463 APAGM 467
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 18/191 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
T+L++ LD VTE L E F+ G +AS+ + RD S G+ +VNF N D RA+E
Sbjct: 45 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 104
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N S+I ++ +Q R+ LR + N+++KN+D + ++
Sbjct: 105 QLNYSLIRNRPCRIMWSQ----RDPALRRTGQ------------GNIFIKNLDAGIDNKA 148
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L F+ G I S KV ++ G + G+GFV + + E A A+ +G +L+ K +YV
Sbjct: 149 LHDTFAAFGNILSCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHH 207
Query: 370 QRKEDRQAHLQ 380
+++RQA ++
Sbjct: 208 IPRKERQAKIE 218
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 228/552 (41%), Positives = 321/552 (58%), Gaps = 59/552 (10%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
N+F+KNL +SIDN L + F FGNI+SCKV E+G SKG+ FV FET+E+A+ AIE +
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 59
Query: 161 NGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
NG + D++++VGRF + +R L + A ++TN+++KN +V + +L E FS+FGK
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 119
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S+ + RD +G SRGFGFV+++ +DA +A++ MNG + K ++ RAQKK ER+ L+
Sbjct: 120 SVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKR 179
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
+FE+ ++ERI +Y+G N+Y+KN+DD + DE+L+ FS G+ITSAKVM E G +KGFGF
Sbjct: 180 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGF 238
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI 398
VCF S EEA+KAV +G ++ KPLYVA+AQRKE+R+AHL QY QH+AG+ A I
Sbjct: 239 VCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQHVAGLRALPAGAI 298
Query: 399 -------PSGY--PSL--------YYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVP 441
GY P + YYT P ++Q+ P P + G R GF
Sbjct: 299 LNQFQPAAGGYFVPEVPQAQGRPPYYT--PNQLAQMRPNP-------CWQQGGRLQGFQG 349
Query: 442 PTRPAFQVSPLP----VNPKHNR-QNRGRMNGNMLPQVGAHY----------MQQSSQSA 486
Q P P + P N +RG LP + A M A
Sbjct: 350 MPSALRQSGPGPALGHLAPTGNAPASRG------LPTIIAQRVRSECPDRLAMDFGGAGA 403
Query: 487 ASSKDSSNQQKGGQSKYVPN---GRIRELNKGSGVSLGTFNSG-----GVMARKPDMLNG 538
A + + Q GG PN V+ + S + R+ +
Sbjct: 404 AQQGLTDSCQSGGVPTARPNLAPPATVAATAPRAVAPYKYASSVRSPHPTIQRQEPLTAS 463
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+ NSELL +LE+PESL KV+
Sbjct: 464 MLAAARPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIGNSELLHMLETPESLCSKVD 523
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 524 EAVAVLQEHHAK 535
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 160/286 (55%), Gaps = 21/286 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++++ +L + + L+D FS F ++ S +V D S Y +V+F + A +AIE
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEK 58
Query: 73 KNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N L+ + + + S R+ + A+ N+++KN E +D+ L+E+F FG
Sbjct: 59 MNGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKT 118
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----- 181
+S KV GKS+G GFV +E E AN A++ +NG + K I+VGR KK +R
Sbjct: 119 LSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELK 178
Query: 182 -----VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
+ ++Y NL++KNLD + +E L ++FS FG I S + E+G S+GFG
Sbjct: 179 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFG 237
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
FV F + ++A +A+ MNG ++GSK LY A AQ+K ER+ L +Q+
Sbjct: 238 FVCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 283
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 213/505 (42%), Positives = 295/505 (58%), Gaps = 75/505 (14%)
Query: 8 ATTP-------ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
ATTP ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+
Sbjct: 39 ATTPNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 98
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
+ D RA+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F
Sbjct: 99 NNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTF 158
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K D
Sbjct: 159 AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKD 218
Query: 181 RV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
R A +TN+++KN+D +VT+E E F K+G I S I+RD++G SRGFGFVN+
Sbjct: 219 RQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNY 278
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
+ +A+ A++ +N S+ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YV
Sbjct: 279 VDHQNAQSAVDELNDKDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYV 338
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI-------------------------- 332
KN+ DDV D++L+ FS GTITSAKVMRD G+
Sbjct: 339 KNLTDDVDDDKLRELFSPFGTITSAKVMRDTVGVSSDSDKEEGKEASEKEGEEASEKEET 398
Query: 333 ----------------------NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQ
Sbjct: 399 KVKAEDEEKTETKKPEKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 458
Query: 371 RKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVP-------- 418
RK+ R++ L+ +Q + + ++A +P Y P+++Y PG +P
Sbjct: 459 RKDVRKSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYG--PGQQGFLPANAGQRGL 516
Query: 419 ---PRPGLMYQPL-GLRTGWRANGF 439
P+PG++ + G R G GF
Sbjct: 517 GFAPQPGMVMAGIPGGRPGQYPGGF 541
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 49/64 (76%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L+A P+QQKQ+LGE LYP ++ +P+L KITGMLLEMDN+ELL L++ +L KV+E
Sbjct: 657 LSAAPPQQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLIDDESALRAKVDE 716
Query: 600 AVQV 603
A+ V
Sbjct: 717 ALHV 720
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 262/426 (61%), Gaps = 57/426 (13%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ S +D RA+E
Sbjct: 53 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALE 112
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 113 ELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 172
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G+GFV +ET E+ANAAI+++NG + +K+++VG I K DR+ A
Sbjct: 173 AQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKAN 232
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+D++ T++ E F K+G+I S +ARD+ G RGFGFVN+ +DA +A++
Sbjct: 233 FTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAVD 292
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N S+ LY RAQKK ERE+ LR Q+E +R+E+ KY G N+YVKN+ DD+ DEE
Sbjct: 293 ELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEE 352
Query: 310 LKAHFSQCGTITSAKVMRD---------------EKGIN--------------------- 333
L+ F G+ITSAKVMRD E G N
Sbjct: 353 LRKVFEAYGSITSAKVMRDTTPADQVENAEEEKKEDGENEAESSEEKKEDEKKEDGTEEL 412
Query: 334 -------------------KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED 374
KGFGFVCFS+P+EA+KAV + M+H KPLYVA+AQRKE
Sbjct: 413 TKKLDTVTIGGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEV 472
Query: 375 RQAHLQ 380
R++ L+
Sbjct: 473 RKSQLE 478
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 161/290 (55%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F + G + S C+ A + +S G+ +V + + A
Sbjct: 53 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNSANDGERA 110
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + K I S R PA + T N+F+KNLD+ + + L + F+
Sbjct: 111 LEELNYTLIKGKPCR----IMWSQR---DPALRKTGHGNIFIKNLDAAIDNKALHDTFAA 163
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE+G SRG+GFV+++ + A A++++NG ++ K ++ K +R
Sbjct: 164 FGNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDR- 222
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +N+YVKNID + TD+E + F + G ITSA + RD++G
Sbjct: 223 ---MSKFEE------MKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKV 273
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV + E+A+KAV+ + + LYV AQ+K +R+ L+ QY
Sbjct: 274 RGFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHEREEELRRQY 323
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 551 ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
+LGE LYP ++ +P+L KITGMLLEMDN ELL L + ++L KV+EA+ V
Sbjct: 678 MLGEALYPKIQAQQPELAGKITGMLLEMDNEELLGLTTNDDALREKVQEALNV 730
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 228 GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKER 287
G S+GFGFV F NPD+A +A+ +N +I K LY A AQ+K R+ L + + + R
Sbjct: 429 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLEASIQARNQVR 488
Query: 288 I 288
+
Sbjct: 489 M 489
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 195/435 (44%), Positives = 276/435 (63%), Gaps = 14/435 (3%)
Query: 4 VPPTATT---PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
P +ATT ASLYVGDL P V++ L+D FS S++S+RVC+D+ T S Y YVNF
Sbjct: 29 TPSSATTENSSASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF 88
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
+AIE N+T + G++ RI WS RDP RK G AN+F+KNL IDN L + F
Sbjct: 89 NDHEAGKKAIEKLNYTPIKGRLCRIMWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTF 148
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KK 178
FGNI+S K+AT E GKSKG GFV FE + +A AI+ LNG + + I+VG + K+
Sbjct: 149 SVFGNILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKE 208
Query: 179 SDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
D L A +TN+++KN++ + T+E E FSK+GK+ S + + E+G +GFGFV+F
Sbjct: 209 RDSQLEESKANFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDF 268
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
+N +DA +A+E +NGS + L+ +RAQKK ER Q L+ Q+E R E++ KY+G N+++
Sbjct: 269 ENHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFI 328
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM 358
KN+DD + DE+LK F+ G ITS +VMR E G ++GFGFVCFS+PEEA+KA+ + +
Sbjct: 329 KNLDDSIDDEKLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQI 388
Query: 359 LHRKPLYVAIAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGYPSLYY-TT 409
+ KPLYVAIAQRK+ R++ L Q++Y Q A ++A + P ++Y
Sbjct: 389 VAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGIPGQFMPPMFYGVM 448
Query: 410 PPGIVSQVPPRPGLM 424
PP V P P M
Sbjct: 449 PPRGVPFNGPNPQQM 463
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 368 bits (945), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 193/429 (44%), Positives = 266/429 (62%), Gaps = 17/429 (3%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
A P ASLYVG+L P V++ L+D FS S++S+RVC+D+ T S Y YVNF
Sbjct: 33 AESPNVENVTASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFN 92
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
AIE N+T + G+ RI WS RDP RK G N+F+KNL IDN L E F
Sbjct: 93 DHEAGKTAIEKLNYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFS 152
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FGNI+SCK+A E GKSKG GFV FE EE+A AI+ +NG + + +YV + K DR
Sbjct: 153 VFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDR 212
Query: 182 V--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
L A +TN+++KNLD + TEE F +G I S+ + +D G SRGFGFV+F+
Sbjct: 213 QSKLDEARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFE 272
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
N +DA +A+EA+N + + LY RAQKK ER Q L+ Q++ + E++ KY+G N+++K
Sbjct: 273 NHEDAVKAVEALNDTEYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIK 332
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+DD + DE+LK F+ GTITSA+VMR E G +KGFGFVCFS+PEEA++A+ + ++
Sbjct: 333 NLDDSIDDEKLKEEFAPFGTITSARVMRTENGKSKGFGFVCFSTPEEATRAITEKNQQIV 392
Query: 360 HRKPLYVAIAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGYPSLYYTTPP 411
KPLYVAIAQRK+ R++ L Q++Y Q A ++A + P ++Y
Sbjct: 393 AGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGIPGQFMPPMFYGV-- 450
Query: 412 GIVSQVPPR 420
VPPR
Sbjct: 451 -----VPPR 454
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 184/399 (46%), Positives = 265/399 (66%), Gaps = 14/399 (3%)
Query: 37 SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARK 96
S+AS+RVC+D+ T RS Y YVNF++ D RA+E N+T + GK RI WS RDP RK
Sbjct: 4 SVASIRVCRDAVTRRSLGYAYVNFMNAADGERALEQLNYTPIKGKPCRIMWSQRDPALRK 63
Query: 97 SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAA 156
+ + N+F+KNL ESIDN L + F FGNI+SCKVA E+G SKG+GFV +E E+A AA
Sbjct: 64 TSLGNIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFVHYEGGEAAEAA 123
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKF 214
I+ +NG + DK +YVG + + +R + + YTNL++K L +++E E F+K+
Sbjct: 124 IQAVNGMLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFSELFAKY 183
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
G++ S ++ D++G S+GFGFVNF + + A +AL ++ S + LY +RAQKK ERE+
Sbjct: 184 GQVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEHKGQTLYVSRAQKKGEREE 243
Query: 275 ILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK 334
L+ +E+++ ++ LKY+G N+YVKN++DD+ +E++ A F+ GTITS K+MRDEKG +K
Sbjct: 244 ELKKSYEQQKYDKSLKYQGVNLYVKNLEDDMDEEKVTAEFAAFGTITSTKIMRDEKGASK 303
Query: 335 GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ------HMA 388
GFGFVCFSSP+EA+KAV +G M +KPLYV++AQRK+ R+ L+ Q AQ
Sbjct: 304 GFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSLAQRKDVRKQQLEAQLAQRNQIRSQQL 363
Query: 389 GIEGSSANVIPSGYP--SLYYTTPPGIVSQVPPRPGLMY 425
G N+ P G P +YY P G P + G+MY
Sbjct: 364 AASGIPPNMPPYGMPPNQMYYPGPGG----YPQQRGMMY 398
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 19/186 (10%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYV L P++++ E + F+++ + S V + G+S +G+VNF A +A+
Sbjct: 161 NLYVKGLAPEISEAEFSELFAKYGQVTSA-VLQVDQDGKSKGFGFVNFADHEAAAKALTE 219
Query: 73 KNHTQLHGKMLRISWSC----RDPDARKS-------------GVANLFVKNLIESIDNVR 115
+ ++ G+ L +S + R+ + +KS GV NL+VKNL + +D +
Sbjct: 220 LHDSEHKGQTLYVSRAQKKGEREEELKKSYEQQKYDKSLKYQGV-NLYVKNLEDDMDEEK 278
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
+ F FG I S K+ E G SKG GFV F + + A A+ LNG G K +YV
Sbjct: 279 VTAEFAAFGTITSTKIMRDEKGASKGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSLA 338
Query: 176 IKKSDR 181
+K R
Sbjct: 339 QRKDVR 344
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 236/639 (36%), Positives = 350/639 (54%), Gaps = 54/639 (8%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P+ + S+YVG+L VT+ +L D FS+ + SVR+C D TGRS Y YVNF S D
Sbjct: 25 PSFGSSVSVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHED 84
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A A+E N T ++GK +R+ +S RDP R+SG ANLF+KNL +I L +MF FG
Sbjct: 85 AKVALEYFNFTVVNGKSIRVMFSNRDPTLRRSGAANLFIKNLEPNIVAKSLHQMFSRFGI 144
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD--KRIYVGRFIKKSDRVL 183
I+SCKVAT +GKSKG+GFVQF +EESA A+ LNG K++YV FI++ +R
Sbjct: 145 ILSCKVATDLNGKSKGYGFVQFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREERQH 204
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A+K+TN++ KNL + T++ L F+ FG I S ++ +D +G S+ FGFVN++ +
Sbjct: 205 IGGASKFTNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEY 264
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A A+E +NG +I LY RA++K ER+ L+ +F+++R ++I K KG N+Y+KN+D
Sbjct: 265 AEEAVEKLNGKIISDVALYVGRAKRKQERQAELKEKFDKERNDKIRKSKGCNLYLKNLDC 324
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGY-MLHRK 362
+ DE L+ F + I + KVM D +G +KGFGFV F++ E A+KAV+ + ++ K
Sbjct: 325 SIDDEYLRNLFGRFDDIGTCKVMVDSEGRSKGFGFVLFTTIEAANKAVSXRNERKLVGTK 384
Query: 363 PLYVAIAQRKEDRQAHLQLQYA-QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 421
LYV +AQRKE+R A L Q+A +HM G P + + PRP
Sbjct: 385 LLYVCVAQRKEERSAILAAQFARRHMVG------------------ARTPAMPQNIAPRP 426
Query: 422 GLM-YQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQ 480
Y G+ +A GF +Q P PV P N M+P +
Sbjct: 427 FYFGYGVPGVLVRPQATGF------GYQQYPQPVIPGLNPGAPSL----MMPYHMLRPIH 476
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSG--------------VSLGTFNSG 526
Q + + NQ +Y+PN N V + +
Sbjct: 477 HQPQQQMAQLPNWNQ----IVRYMPNACNGPTNSAMAPQMDFVAPVVPQISVLTDSVVTA 532
Query: 527 GVMARKP--DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELL 584
++ +P D L LA+ PE+Q ILGERL PLV + +P+ K+T MLLE++ + +L
Sbjct: 533 PSISEEPSIDSLATALASAEPEKQHLILGERLQPLVAQLEPEHAGKVTEMLLELEKAVVL 592
Query: 585 LLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLS 623
L+ES E+L KV +A++ L+ + + T + P+ LS
Sbjct: 593 ELIESAENLQEKVNQAMESLRPKKEE-GTNDPAEPSSLS 630
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 368 bits (944), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 188/376 (50%), Positives = 259/376 (68%), Gaps = 12/376 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDL DVT+ +LF+ FS+ +AS+RVC+D+ T RS Y YVN+ S DA A
Sbjct: 24 SSLYVGDLDRDVTEAQLFEIFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSALDAAAAER 83
Query: 72 VK---NHTQL--------HGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
N+T + K +RI WS RDP RKSGV N+F+KNL + IDN L + F
Sbjct: 84 AIEALNYTSVIPGKEGGEDSKPMRIMWSHRDPAFRKSGVGNIFIKNLDKDIDNKALHDTF 143
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
FG I+SCKVAT G SKG+GFV +E EE+A AIE +NG + K+++VG F+K+++
Sbjct: 144 TAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGKKVFVGPFLKRTE 203
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
R + YTN+F+KNL ++T+E + + F++ G + S I +DE G S+GFGF+NF++
Sbjct: 204 RPV-DKEQHYTNVFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFED 262
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+ A A+ A+NG I K LY RAQKKAERE L+ +F+E R+ERI KY+G N+YVKN
Sbjct: 263 AEGAHAAVTALNGKEIDGKELYCGRAQKKAEREAELKQKFDEVRQERIAKYQGMNLYVKN 322
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+ D+V D++L+A F+ GTITSAKVM+D G +KGFGFVC+SSPEEA++AV +G ML
Sbjct: 323 LVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFGFVCYSSPEEATRAVTEMNGKMLL 382
Query: 361 RKPLYVAIAQRKEDRQ 376
KP+YVA+AQR+E R+
Sbjct: 383 GKPMYVALAQRREVRR 398
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 56/65 (86%)
Query: 545 PEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
PEQQKQ+LGERL+PLV++ +P+L KITGMLLEMDNSELLLLLESP++L KV+EA+ VL
Sbjct: 603 PEQQKQMLGERLFPLVQRLQPELAGKITGMLLEMDNSELLLLLESPDALVAKVDEAITVL 662
Query: 605 KLSEA 609
K A
Sbjct: 663 KQHNA 667
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 368 bits (944), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 190/399 (47%), Positives = 274/399 (68%), Gaps = 6/399 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ F+ ++S+RVC+D+ T RS Y YVNF DA RA+E
Sbjct: 28 ASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAERALE 87
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ + G+ RI WS RDP RK N+F+KNL SID+ L + F FGNI+SCK+
Sbjct: 88 TLNYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSAFGNILSCKI 147
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
A E G SKG+GFV +ET E+A +AI+++NG + D++++VG I + +R L +
Sbjct: 148 AHDEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGHHISRKERESKLGESRVQ 207
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+ DVT+E L + F K+G I S +I RD++GTS+GFGFVNF+ DA+ A++
Sbjct: 208 FTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDDGTSKGFGFVNFEKHQDAQNAVD 267
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
++ + LY +RAQKK ERE+ LR Q+EE + E++ KY+G N+YVKN+DDD+ D+
Sbjct: 268 DLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLDDDMDDDR 327
Query: 310 LKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS G ITSAK+MRDEK I++GFGFVCF+SPE+A++AV +G ++ KP+YVAI
Sbjct: 328 LRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVTEMNGRIIGSKPIYVAI 387
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYY 407
AQRKE R++ L++Q AQ + A + PS +P Y
Sbjct: 388 AQRKEVRRSQLEIQMAQRN---QLKQAMMPPSVFPPTMY 423
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 155/302 (51%), Gaps = 21/302 (6%)
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQ 146
S P++ A+L+V L S+ L EMF G + S +V + +S G+ +V
Sbjct: 16 STSAPESAPLASASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVN 75
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
F A A+E LN + + + I S R N+F+KNLD + +
Sbjct: 76 FHRMADAERALETLNYSMIKGRSCR----IMWSQRDPSLRKGNNGNIFIKNLDPSIDHKA 131
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L + FS FG I S IA DE G S+G+GFV+++ + A A++++NG ++ + ++
Sbjct: 132 LHDTFSAFGNILSCKIAHDEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGHH 191
Query: 267 QKKAEREQIL---RHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSA 323
+ ERE L R QF +N+YVKNI DVTDEEL F + GTITS
Sbjct: 192 ISRKERESKLGESRVQF-------------TNIYVKNIPFDVTDEELSQLFGKYGTITSC 238
Query: 324 KVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+ RD+ G +KGFGFV F ++A AV+ H + LYV+ AQ+K +R+ L+ QY
Sbjct: 239 VITRDDDGTSKGFGFVNFEKHQDAQNAVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQY 298
Query: 384 AQ 385
+
Sbjct: 299 EE 300
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 367 bits (943), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 204/451 (45%), Positives = 285/451 (63%), Gaps = 42/451 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTG----RSTCYGYVNFLSPHDAI 67
ASLYVG+LH DVT+ L++ S + L + V K+ T R C V A
Sbjct: 11 ASLYVGNLHGDVTEAMLYEKLSP-RDLTHLWVIKNITNCVLYPRLKCVSLV-------AE 62
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+
Sbjct: 63 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 122
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPS 185
SCKV E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L +
Sbjct: 123 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 181
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A ++TN+++KN +V +E L E FS+FGK S+ + RD G S+GFGFV+++ +DA
Sbjct: 182 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDAN 241
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+E MNG I KV++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD +
Sbjct: 242 KAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 301
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE+L+ FS G+IT A+VM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLY
Sbjct: 302 DDEKLRKEFSPFGSITRAEVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 360
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYT 408
VA+AQRKE+R+AHL QY Q +AG+ AN I GY P++ YYT
Sbjct: 361 VALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT 420
Query: 409 TPPGIVSQVPPRPGLMYQPLGLRTGWRANGF 439
P ++Q+ P P + G R GF
Sbjct: 421 --PNQLAQMRPNP-------RWQQGGRPQGF 442
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 571 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 630
Query: 599 EAVQVLKLSEAK 610
EAV VL+ AK
Sbjct: 631 EAVAVLQAHHAK 642
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 367 bits (943), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 244/676 (36%), Positives = 344/676 (50%), Gaps = 130/676 (19%)
Query: 4 VPPTATTP---ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
P TA P ASLYVG+L P VT+ LF+ FS+ S+AS
Sbjct: 49 TPTTAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVAS-------------------- 88
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
IRA+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F
Sbjct: 89 ------IRALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTF 142
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
FGNI+SCKVA E+G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K D
Sbjct: 143 AAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKD 202
Query: 181 RV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
R A +TN+++KN+ ++VT++ + F+ FG + S +ARD+ G SRGFGFVNF
Sbjct: 203 RQSKFEEMKANFTNVYVKNIANEVTDDEFRDLFAAFGDVTSSSLARDQEGKSRGFGFVNF 262
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
+ A +A+E +N + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+
Sbjct: 263 TTHEAAAKAVEDLNNKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYI 322
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDE----------------------------- 329
KN+DD+V DE+L+ F+ G ITSAKVMRD
Sbjct: 323 KNLDDEVDDEKLRTLFADFGPITSAKVMRDTPTDSKEDEEGSSEEKEKENKPEAEEKTEE 382
Query: 330 ---------------KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED 374
G +KGFGFVCFS+P++A+KAV + M+H KPLYVA+AQRK+
Sbjct: 383 KEGSEKKEKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMNQRMVHGKPLYVALAQRKDV 442
Query: 375 RQAHLQL-----------------QYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQV 417
R++ L+ QY Q G V P G + +
Sbjct: 443 RKSQLEASIQARNQLAAAAAGLPQQYMQPPVFYAGGQQPVFPQGGRGMPF---------- 492
Query: 418 PPRPGL-MYQPLGLRTGWRANGF-------VPPTRPAFQVSPLPVNPKHNRQNRGRMNGN 469
P+PG+ M G R G G+ VP P P P N G
Sbjct: 493 -PQPGMPMPAVQGGRPGQFPGGYPQQGGRGVPQQMPPVYGMPGQFPPGAPYPNSGN---- 547
Query: 470 MLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVM 529
PQ A Q +Q A + N + N + +G+ + NS ++
Sbjct: 548 --PQFLAAIQQGGNQPGAGRGANPNGPRN-------NAPFPQGGRGAAPAQ-DLNSSSLI 597
Query: 530 ARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
++ AA +P QQKQILGE ++P ++ +P+L KITGMLLEM+N+EL+ L+E
Sbjct: 598 QQQLSS-----AAGNPGQQKQILGEVIFPKIQAMQPELAGKITGMLLEMENAELVNLIED 652
Query: 590 PESLAVKVEEAVQVLK 605
+L KV+EA+ V +
Sbjct: 653 ESALKAKVDEALGVYE 668
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 367 bits (943), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 199/470 (42%), Positives = 289/470 (61%), Gaps = 30/470 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P++T+ L+D FS ++S+RVC+D+ T S Y YVN+ +AI+
Sbjct: 50 ASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQ 109
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ +++G+ RI WS RDP RK G N+F+KNL +IDN L E F FG ++SCKV
Sbjct: 110 ELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKV 169
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E+G S+G GFV F+ E A AIE +NG + +YV + K DR+ L A
Sbjct: 170 ALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKAN 229
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+D + T+E + FS++G+I S + +D G +GFGFVNF + + A +A+E
Sbjct: 230 FTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVE 289
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG S+ LY RAQKK ER + L+ Q+E+ R E++ K++G N+++KN+DD + DE+
Sbjct: 290 ELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEK 349
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK F+ GTITSA+VMRD++G +KGFGFVCFSSPEEA+KA+ + ++ KPLYVAIA
Sbjct: 350 LKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIA 409
Query: 370 QRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGY-PSLYY--TTPPGIVSQVP 418
QRK+ R++ L Q+++ Q ++A +P Y P ++Y P G
Sbjct: 410 QRKDVRRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPGQYMPQMFYGVMAPRGFPG--- 466
Query: 419 PRPGLMYQPLGLRTGWRANGFVPPTR--------PAFQVSPLPVN--PKH 458
P PG M P+G G NG VPP + P +Q P P N P+H
Sbjct: 467 PNPG-MNGPMG--AGIPKNGMVPPPQQFAGRPNGPMYQGMP-PQNQFPRH 512
>gi|419961|pir||JN0573 polyadenylate-binding protein - fruit fly (Drosophila melanogaster)
Length = 598
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 247/632 (39%), Positives = 349/632 (55%), Gaps = 80/632 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DV + LFD FS + +RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPV--IRVCRDVITRRSLGYAYVNFQQPADAERALD 59
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP R+SGV N+F+KNL + N + + F FGNI+SCKV
Sbjct: 60 TMNL--VRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRA--NKAIYDTFSAFGNILSCKV 115
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT E G SKG+GFV TEE+AN +I+ +NG + K++YVG+FI + ++ A +T
Sbjct: 116 ATDEKGNSKGYGFVH--TEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQ--EEKAKLFT 171
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KN D +E L E F +GKI ++ E+G S+GFGFV F+ + A A++A+
Sbjct: 172 NVYVKNFTEDFDDEKLKEFFEPYGKITKVM--SKEDGKSKGFGFVAFETTEAAEAAVQAL 229
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG G K LY ARAQKKAER+Q L+ +FEE +++R G N+YVKN+DD + D+ L+
Sbjct: 230 NGKGEG-KSLYVARAQKKAERQQELKRKFEELKQKR--HEFGVNLYVKNLDDTIDDDRLR 286
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS G ITSAKV DE+G +KGFGFVCF+ EA+ AV +G ++ LYVA+AQR
Sbjct: 287 IAFSPYGNITSAKV--DEEGRSKGFGFVCFNPESEATCAVTELNGRVVG--SLYVALAQR 342
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG--------IVSQVPPRPGL 423
KE+R+A L QY +HM G+ P+ + T P + +Q+ P
Sbjct: 343 KEERKADLASQYMRHMTGMRMQQLGQQPNAASGFFVPTLPSNQRFFGSQVATQMRNTPRW 402
Query: 424 MYQP---------------------LGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQN 462
+P + T +R+ G +P Q + +N +N
Sbjct: 403 QVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAG-ARGAQPQVQGTHAAAAAANNMRN 461
Query: 463 RGR--MNGNMLPQV---GAHYMQQSSQSAASSKDSSNQQKG---GQSKYVPNGRIRELNK 514
G + G P + GA + Q ++ K +SN + Q++ +P
Sbjct: 462 TGARAITGQAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVLHQTQPIPQ-------- 513
Query: 515 GSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGM 574
L NS ++A +LA P++QKQ GERLYP++E +L KITGM
Sbjct: 514 ----QLQGKNSEKLIA-------SLLANAKPQEQKQ--GERLYPMIEHMHANLAGKITGM 560
Query: 575 LLEMDNSELLLLLESPESLAVKVEEAVQVLKL 606
LLE++NSELL + E+L KVEEAV VL++
Sbjct: 561 LLEIENSELLHM--DQEALKAKVEEAVAVLQV 590
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 211/496 (42%), Positives = 295/496 (59%), Gaps = 61/496 (12%)
Query: 2 AVVPPTATTP---ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYV 58
A P TA P ASLYVG+L P VT+ LF+ FS+ ++AS+RVC+D+ T RS Y YV
Sbjct: 46 APTPTTAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYV 105
Query: 59 NFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQE 118
N+ S D +A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 106 NYNSTPDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHD 165
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178
F FGNI+SCKVA E+G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K
Sbjct: 166 TFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPK 225
Query: 179 SDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
DR A +TN+++KN+ DVT++ E F KFG + S +ARD+ G RGFGFV
Sbjct: 226 KDRQSKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFV 285
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
NF + A +A+E +NG + LY RAQKK ERE+ LR +E R E+ KY+G N+
Sbjct: 286 NFTTHEAAFKAVEDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNL 345
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRD------------EK-------------- 330
Y+KN+DDDV DE+L+ F++ G ITSAKVMRD EK
Sbjct: 346 YIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDTPQEGEEEVKDQEKDKENQKEAENEAES 405
Query: 331 ----------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED 374
G +KGFGFVCFS+P++A+KAV + M++ KPLYVA+AQRK+
Sbjct: 406 AESAEKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDV 465
Query: 375 RQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYT--TPPGIVSQ----VP-PRPGL 423
R++ L+ +Q + + ++A +P Y P ++Y PG + Q +P P+PG+
Sbjct: 466 RKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPPVFYAPGQQPGFIPQGGRGMPFPQPGM 525
Query: 424 MYQPLGLRTGWRANGF 439
PL G R F
Sbjct: 526 ---PLPNVQGGRPGQF 538
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 551 ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
ILGE ++P ++ +L KITGMLLEMDNSEL+ L+E +L KV+EA+ V
Sbjct: 674 ILGELIFPKIQAINAELAGKITGMLLEMDNSELVNLIEDEAALKAKVDEALAV 726
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 205/496 (41%), Positives = 285/496 (57%), Gaps = 60/496 (12%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PT P ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ S
Sbjct: 47 PTNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 106
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 107 ADGERALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 166
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET ++AN AI+++NG + +K+++VG I K DR+
Sbjct: 167 GNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMS 226
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
A +TN+++KN+D++ T++ E F K+G+I S +A D+ G RGFGFVNF
Sbjct: 227 KFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRH 286
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA +A++ +N + LY RAQKK ERE+ LR Q+E +R+E+ KY+G N+YVKN+
Sbjct: 287 EDAAKAVDELNDLDFKGQKLYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNL 346
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRD----------EK--------------------- 330
D++ DEEL+ F G ITSAKVMRD EK
Sbjct: 347 ADEIDDEELRKIFEPYGAITSAKVMRDTTPLDKVEGAEKEDGEKKESESSAEDKEEEKKD 406
Query: 331 ---------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
G +KGFGFVCFS+P+EA+KAV + M+H KPLYVA+A
Sbjct: 407 DADELAKKLDTVTIGGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHSKPLYVALA 466
Query: 370 QRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVPPRPGLMY 425
QRKE R++ L+ +Q + + ++A +P + P + P G +P G M
Sbjct: 467 QRKEVRKSQLEASIQARNQVRMQQQATAGGLPQQFMAPPQMFIGPNGQPMMIPGGRGQMP 526
Query: 426 QPLGLRTGWRANGFVP 441
G+ G G P
Sbjct: 527 FVQGMPQGQGQRGGFP 542
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 178/365 (48%), Positives = 253/365 (69%), Gaps = 4/365 (1%)
Query: 28 LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87
L++ FS + S+RVC+D T RS CY Y+NF P DA RA++ N + G+ +RI W
Sbjct: 2 LYEKFSPAGPILSIRVCRDVATRRSLCYAYINFQQPADAERALDTMNFEVIKGQPIRIMW 61
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQF 147
S RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV E G S+G GFV F
Sbjct: 62 SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHF 120
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEE 205
ET ++A AI +NG + D++++VG F + +R L + ++TN+++KNL DV E
Sbjct: 121 ETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREAELGARVMEFTNIYVKNLQVDVDER 180
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265
L + FS+FGK+ S+ + RD +G SRGFGFVNF+ ++A++A+ MNG + ++LY R
Sbjct: 181 GLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVGR 240
Query: 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
AQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE+L+ FS G ITSAKV
Sbjct: 241 AQKRLERQNELKRRFEQMKQDRLNRYQGVNLYVKNLDDSINDEKLRKEFSPYGVITSAKV 300
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
M E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+R+A L QY Q
Sbjct: 301 M-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 359
Query: 386 HMAGI 390
++ +
Sbjct: 360 RLSTV 364
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 109/205 (53%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++YV +L DV + L D FS+F + SV+V +DS +G S +G+VNF +A +A+
Sbjct: 167 NIYVKNLQVDVDERGLQDLFSQFGKMLSVKVMRDS-SGHSRGFGFVNFEKHEEAQKAVVH 225
Query: 73 KNHTQLHGKML-----------------RISWSCRDPDARKSGVANLFVKNLIESIDNVR 115
N ++ G++L R +D R GV NL+VKNL +SI++ +
Sbjct: 226 MNGKEVSGRLLYVGRAQKRLERQNELKRRFEQMKQDRLNRYQGV-NLYVKNLDDSINDEK 284
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F +G I S KV T E G SKG GFV F + E A A+ +NG VG K +YV
Sbjct: 285 LRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 343
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ L +
Sbjct: 344 QRKEER-----KAILTNQYMQRLST 363
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 47/66 (71%)
Query: 553 GERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVS 612
GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K+EEAV VL+ +A
Sbjct: 503 GERLYPLIRDVHHQLAGKITGMLLEIDNSELLLMLESPESLHAKIEEAVAVLQAHQALEQ 562
Query: 613 TQEAIH 618
+ +H
Sbjct: 563 PKAYVH 568
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 184/387 (47%), Positives = 252/387 (65%), Gaps = 10/387 (2%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TT ASLYVG+L P V++ L+D FS + S+RVC+D+ T S Y YVNF
Sbjct: 47 TTSASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRT 106
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
AIE N++ + GK RI WS RDP RK G N+F+KNL IDN L + F FGNI+S
Sbjct: 107 AIEKLNYSPIKGKPCRIMWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFSVFGNILS 166
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSP 186
CK+AT E GKSKG GFV FE + +A A++ +NG + + +YV + + K DR L
Sbjct: 167 CKIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKKDRESKLEEV 226
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
A +TN+++KN+D D E+ FSK+G I S+ + +D G RGFGF+NF+N DDA +
Sbjct: 227 KANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAK 286
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
A+E +N + LY RAQKK ER Q L+ Q+E R E++ KY+G N++VKN+DD +
Sbjct: 287 AVEELNDLEFKGQKLYVGRAQKKYERLQELKKQYEASRLEKLAKYQGVNLFVKNLDDSID 346
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
DE+L+A F+ G+ITSAKVMR+E+G +K FGFVCFS+PEEA+KA+ + ++ KPLYV
Sbjct: 347 DEKLEAEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 406
Query: 367 AIAQRKEDRQAHL--------QLQYAQ 385
AIAQRK+ R++ L QL+Y Q
Sbjct: 407 AIAQRKDVRRSQLAQQIQARNQLRYQQ 433
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 205/480 (42%), Positives = 290/480 (60%), Gaps = 58/480 (12%)
Query: 2 AVVPPTATTP---ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYV 58
A P A P ASLYVG+L P VT+ LF+ FS+ ++AS+RVC+D+ T RS Y YV
Sbjct: 46 APTPTAAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYV 105
Query: 59 NFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQE 118
N+ S D +A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 106 NYNSTPDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHD 165
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178
F FGNI+SCKVA E+G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K
Sbjct: 166 TFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPK 225
Query: 179 SDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
DR A +TN+++KN+ DVT+E + F KFG + S +ARD+ G +RGFGFV
Sbjct: 226 KDRQSKFEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFV 285
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
NF + A +A+E +NG + LY RAQKK ERE+ LR +E R E+ KY+G N+
Sbjct: 286 NFTTHEAAFKAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNL 345
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRD------------EK-------------- 330
Y+KN+DDDV DE+L+ F++ G ITSAKVMRD EK
Sbjct: 346 YIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDVPQEGEEEAKDQEKDKENQKEGEKEGES 405
Query: 331 ----------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED 374
G +KGFGFVCFS+P++A+KAV + M++ KPLYVA+AQRK+
Sbjct: 406 AEGAEKKTEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDV 465
Query: 375 RQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYT--TPPGIVSQ----VP-PRPGL 423
R++ L+ +Q + + ++A +P Y P ++Y PG + Q +P P+PG+
Sbjct: 466 RKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPPVFYAPGQQPGFIPQGGRGIPFPQPGM 525
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 551 ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
ILGE ++P ++ +L KITGMLLEMDNSEL+ L+E +L KV+EA+ V
Sbjct: 672 ILGELIFPKIQAINSELAGKITGMLLEMDNSELVNLIEDEAALKAKVDEALAV 724
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 239/614 (38%), Positives = 336/614 (54%), Gaps = 87/614 (14%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS+ S+ S+RVC+D+ + +S Y YVN+ DA A+E
Sbjct: 8 ASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALE 67
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++H K RI W+ R+P AR+SG N+F+KNL + IDN L + F FG I+SCKV
Sbjct: 68 ELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSCKV 127
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A E G+S+G+GFV FE EE A AI+ +NG + + + V +F+ + +R YT
Sbjct: 128 AADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKEREQQG-GRTYT 186
Query: 192 NLFMKNL-DSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
N+++KNL DS T + L + F KFG I S +A+DEN SRGFGFVNF+N + A A+EA
Sbjct: 187 NIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVEA 246
Query: 251 MNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MN I + + L+ RA KK ERE+ L+ ++ R+ER K K SN+Y+K++ +DVT++
Sbjct: 247 MNEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDA 306
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS+ GTITS K+M D G ++GFGFV F S +EA+ A+ HG M+ KPLYVA+A
Sbjct: 307 LRDKFSKFGTITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQEMHGSMIDGKPLYVALA 366
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
RK DRQ QL + M G +P GY L + P PP+ +M
Sbjct: 367 LRKVDRQK--QLASRRTMPG-------QMPMGY--LPFMMP-------PPQANMM----- 403
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRG-RMNGNMLPQVGAHYMQQSSQSAAS 488
R G R PP F + + +Q MNGNM
Sbjct: 404 -RMGNR----FPPM---FMMQQQQQQQQQQQQQHAPGMNGNM-----------------R 438
Query: 489 SKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGT---FNSGGVMARKPDMLNGMLAAPSP 545
+ N KG NGR R +G S G S AR +AAP+P
Sbjct: 439 GRGRGNPNKG-------NGRGR--GQGPMPSQGQPMPMQSAPSAAR--------VAAPAP 481
Query: 546 E---------------QQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
+QK +LGE+L+PL+++ + KITGMLL M+ +E+L LL+
Sbjct: 482 NNNQDEFANLAHMTDAEQKNLLGEKLFPLIQQEYHERAGKITGMLLGMETAEVLNLLQDQ 541
Query: 591 ESLAVKVEEAVQVL 604
+ L + EA +L
Sbjct: 542 DQLKQRAREAYDLL 555
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASKA 350
+ +++YV ++ +VT+ L FSQ G++ S +V RD G+ +V + +A A
Sbjct: 6 QNASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHA 65
Query: 351 VNTFHGYMLHRKPLYVAIAQR 371
+ + +H KP + AQR
Sbjct: 66 LEELNFEKIHDKPCRIMWAQR 86
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 237/644 (36%), Positives = 330/644 (51%), Gaps = 62/644 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL PDVT+ L++ F+ +AS+RVC+DS T +S Y YVN+ S DA A+E
Sbjct: 27 ASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAQEALE 86
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ ++ G RI WS RDP R+SG N+FVKNL +SID L + F +FG I+SCKV
Sbjct: 87 NLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGPILSCKV 146
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A G SK +GFV +E EESA AIE +NG +G KR+ V F++K DR +T
Sbjct: 147 AVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDR---ESEEVFT 203
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL+++N +D EE L + K+G+I S+++ D G R F FVN+ P+ A+ + +
Sbjct: 204 NLYVRNFPADWDEEALRQFLEKYGEITSMMLKEDSKG--RRFAFVNYKEPEVAKEVVNTL 261
Query: 252 NGSVI--GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
N + S+ L Q KA+R+ +LR QF + K SN+Y+KN+DD DE
Sbjct: 262 NDLKLEESSEPLLVCPHQDKAKRQNLLRAQFNNSTMAQEDKRVTSNLYIKNLDDSFDDES 321
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L F GTITS+KVM D ++GFGFVCF++P+EA+KA+ H ++ KPLYV +A
Sbjct: 322 LGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYVGLA 381
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYP--SLYYTTP----------PGIVSQV 417
++++ R Q G E S +V+ + P SLYY P PG +
Sbjct: 382 EKRDQRMMR-----MQQRRGFEPHSRDVLFNELPSQSLYYPRPFPAPTFPNSVPGPNKKF 436
Query: 418 PPRPGLMYQPLGLRTGWRANGFVPP--TRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVG 475
PP P N PP + + V + P N +N M+ +P
Sbjct: 437 PPN-FTTNNPQANNYPPNYNANFPPVNSYANYSVRNVAKAPAANARNMSPMSSANIPSNI 495
Query: 476 AHYMQQSSQSAASSKDSSNQQKGGQSKY--VPNGRIRELNKGSGVSLGTFNSGGV----- 528
HY S A S N G + VP L GV G V
Sbjct: 496 PHYPSVVPPSMAHVVASGNMGVHGNLPHHVVPPNMPHVLPGNMGVP-SNMVPGAVGLRRD 554
Query: 529 --------------------MARKPDM-------LNGMLAAPSPEQQKQILGERLYPLVE 561
AR +M +NG + QKQ++GERL+P++
Sbjct: 555 SSNPKTHQHQMPVSAFKFTPQARNREMPMHPQYVVNGNVQVDDVAMQKQMIGERLFPIIA 614
Query: 562 KHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
+ PDL KITGM+LE+DN ELL LLE + L K++EA++VLK
Sbjct: 615 RDNPDLAGKITGMMLEIDNHELLQLLEDNDQLKAKIDEAIKVLK 658
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 147/297 (49%), Gaps = 30/297 (10%)
Query: 93 DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEE 151
D + A+L+V +L + L E+F G + S +V S KS G+ +V + + +
Sbjct: 20 DTQVFSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQ 79
Query: 152 SANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLV 208
A A+ENLN + I S+R P+ + + N+F+KNLD + + L
Sbjct: 80 DAQEALENLNYIEIKGHPTR----IMWSNR---DPSLRRSGAGNIFVKNLDKSIDTKSLY 132
Query: 209 EKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268
+ FS FG I S +A D +G S+ +GFV+++N + AR A+E +NG +IG K + A +
Sbjct: 133 DTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLR 192
Query: 269 KAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD 328
K +RE E + +N+YV+N D +E L+ + G ITS + D
Sbjct: 193 KQDRES-----------EEVF----TNLYVRNFPADWDEEALRQFLEKYGEITSMMLKED 237
Query: 329 EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR--KPLYVAIAQRKEDRQAHLQLQY 383
KG + F FV + PE A + VNT + L +PL V Q K RQ L+ Q+
Sbjct: 238 SKG--RRFAFVNYKEPEVAKEVVNTLNDLKLEESSEPLLVCPHQDKAKRQNLLRAQF 292
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 365 bits (936), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 185/370 (50%), Positives = 248/370 (67%), Gaps = 6/370 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL+P VT+ LF+ F +AS+RVC+D+ T RS Y YVNF + DA RA++
Sbjct: 10 ASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAERALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RKSG N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 70 TLNYTLIKGRPCRIMWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
T G SKG+GFV +ET E+A++AI +NG + K +YVGRFI + +R S K+T
Sbjct: 130 VTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFIARKERTPGSDPEKFT 189
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL TEE L F FG + S ++ +D R F FVNF++ + A RA E +
Sbjct: 190 NIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEEL 249
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG +G K +Y RAQKK+ERE LR + R+ER KY+G N+Y+KN+DD V DEEL
Sbjct: 250 NGRKLGDKEVYVGRAQKKSERESFLR----KLREERAQKYQGINLYIKNLDDTVNDEELH 305
Query: 312 AHFSQC--GTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
FS G ITS KVM D+KG ++GFGFVC+++PE+ASKAV+ +G M+ KP+YVA+A
Sbjct: 306 KLFSALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYVALA 365
Query: 370 QRKEDRQAHL 379
+RK+ R A L
Sbjct: 366 ERKDVRSAKL 375
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 549 KQILGERLYPLVEKHKPDLVA-KITGMLLE-MDNSELLLLLESPESLAVKVEEAVQVLKL 606
K I+GE LYPLVE KITGMLLE MD +ELL LL+SP++L KV+EAV VLK
Sbjct: 389 KNIIGETLYPLVEALTSATQGPKITGMLLESMDVTELLHLLQSPDALREKVDEAVGVLKA 448
Query: 607 SEAK 610
E +
Sbjct: 449 HEGE 452
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 192/425 (45%), Positives = 265/425 (62%), Gaps = 50/425 (11%)
Query: 6 PTATTP-----ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
P++T P ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+
Sbjct: 53 PSSTAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNY 112
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
S D +A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F
Sbjct: 113 NSTQDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTF 172
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
FGNI+SCKVA E+G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K D
Sbjct: 173 AAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKD 232
Query: 181 RV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
R A +TN+++KN++ +VTEE E F+K+G++ S +ARD G SRGFGFVNF
Sbjct: 233 RQSKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNF 292
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
A +A+E +NG + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+
Sbjct: 293 TTHASAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYI 352
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRD------------------------------ 328
KN+ DDV D++L+ FS+ G ITSAKVMRD
Sbjct: 353 KNLADDVDDDKLRQMFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGEG 412
Query: 329 -------EK------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
EK G +KGFGFVCFS+P++A+KAV + M+ KPLYVA+AQRK+ R
Sbjct: 413 EAAEKKTEKKVERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRKDVR 472
Query: 376 QAHLQ 380
++ L+
Sbjct: 473 KSQLE 477
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 163/290 (56%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F G++ S C+ A + +S G+ +V + + + A
Sbjct: 64 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNSTQDGEKA 121
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + + I S R PA + T N+F+KNLD + + L + F+
Sbjct: 122 LEELNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 174
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DENG S+G+GFV+++ + A +A++ +NG ++ K +Y K +R+
Sbjct: 175 FGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ 234
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +NVYVKNI+ +VT+EE + F++ G +TS+ + RD +G +
Sbjct: 235 ----SKFEE------MKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKS 284
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV F++ A+KAV +G + LYV AQ+K +R+ L+ Y
Sbjct: 285 RGFGFVNFTTHASAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSY 334
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 67/121 (55%), Gaps = 16/121 (13%)
Query: 499 GQSKYVPNGRIRELN---KGSGVSLGTFNSG--GVMARKPDMLNGMLAAPSPEQ------ 547
G + Y PNGR + N +G G+F +G GV P G L+A + Q
Sbjct: 621 GLAGYPPNGRPQNGNMAGRGGPNRGGSFAAGRGGVPPAGPVGATGELSATALLQSQLAAT 680
Query: 548 -----QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQ 602
QKQILGE L+P ++ +P+L KITGMLLEMDN+EL+ LLE +L KV EA+
Sbjct: 681 TNIHAQKQILGENLFPKIQAIQPELAGKITGMLLEMDNNELVHLLEDEAALLAKVNEAMA 740
Query: 603 V 603
V
Sbjct: 741 V 741
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 200/413 (48%), Positives = 270/413 (65%), Gaps = 11/413 (2%)
Query: 6 PTAT--TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PT + T ASLYVGDLHPDV + LF+ FS + S+RVC+D+ T S Y YVNF P
Sbjct: 24 PTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N LHGK +RI WS RDP R+SG N+F+KNL + IDN + + F F
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLF 143
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS--DR 181
GNI+SCKVA E+G SKG+GFV FETEE+A AI+ +NG + K+++VG+F ++ +R
Sbjct: 144 GNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNR 203
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L A K+TN+++KN ++ L + F+K+G I S + E G S+GFGFV F P
Sbjct: 204 ELGETAKKFTNVYVKNFGEHYNKDTLEKLFAKYGTITSCDVMTSE-GKSKGFGFVAFAEP 262
Query: 242 DDARRALEAMNGS-VIGSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
++A A++A+N S V GS + L+ RAQKK+ER L+ + E+ + ER+ KY+G N+YVK
Sbjct: 263 EEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVK 322
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+D+ V DE LK F G ITSAKVM DE G +KGFGFVCF PEEA+ AV+ + M+
Sbjct: 323 NLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVSEMNSKMV 382
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG 412
KPLYVA+AQRKEDR+A L QY Q +A + + +P G +Y PG
Sbjct: 383 CSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTN--VPGG--GMYSPAQPG 431
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL--VAKITGMLLEMDNSEL 583
G V+ + + ML+A +P++QKQ+LGER+Y L+EK P KITGM+LE+DNSEL
Sbjct: 565 GIVIGGQEPLTTAMLSAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSEL 624
Query: 584 LLLLESPESLAVKVEEAVQVL 604
+++L+ + KV+EA VL
Sbjct: 625 IMMLQDSDLFRSKVDEAASVL 645
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 197/441 (44%), Positives = 280/441 (63%), Gaps = 28/441 (6%)
Query: 8 ATTP---ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF---L 61
A+TP +SLYVGDL DVT+ +LF+ FS +AS+RVC+D+ T RS Y YVN+ L
Sbjct: 16 ASTPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSAL 75
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
P A RA+E N+ ++GK +RI WS RDP ARKSGV N+F+KNL ++ID L + F
Sbjct: 76 DPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFS 135
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FG I+SCKVAT +G SKG+GFV FE + +A+ AI+ +N + K +YV F K++DR
Sbjct: 136 AFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYVAPFQKRADR 195
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
P YTN+F+KNL +D+ ++ L + ++ G+I S ++ +D+ G S+GFGF+NF +
Sbjct: 196 --PRARTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDA 253
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+ A + +E +N + K LYA RAQKK ERE +LR + EE ++ER LKY+ N+YVKN+
Sbjct: 254 ESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQSMNLYVKNL 313
Query: 302 -DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASK-AVNTFHGYML 359
D++V D+ L+ F+ GTITS KVM+D G +KGFGFVCF+S +EA++ V +G M+
Sbjct: 314 SDEEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRPPVTEMNGKMV 373
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP 419
KPLYVA+AQRK+ R+A Q +M G A + PP ++ + P
Sbjct: 374 KGKPLYVALAQRKDVRRA---TQLEANMQARMGMGA-----------MSRPPNPMAGMSP 419
Query: 420 RPGLM----YQPLGLRTGWRA 436
PG M P G+ G RA
Sbjct: 420 YPGAMPFFAPGPGGMAAGPRA 440
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 362 bits (930), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 193/426 (45%), Positives = 267/426 (62%), Gaps = 11/426 (2%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T SLYVG+L P V++ L+D FS S+AS+RVC+D+ T S Y YVNF +A
Sbjct: 45 TSTSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDHEAGKQA 104
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
IE N+T + GK+ RI WS RDP RK G N+F+KNL + IDN L + F FGNI+S
Sbjct: 105 IEKLNYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIKNLNQDIDNKALFDTFSVFGNILSS 164
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPA 187
K+AT E GKSKG GFV FE E +AN AI+ LNG + + IYV + K+ D L
Sbjct: 165 KIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETK 224
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A +TN+++KN+D + T+E E F K G + S+ + R +G +GFGFVN+++ +DA +A
Sbjct: 225 AHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKA 284
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
+E +NG+ + L+ RAQKK ER Q L+ Q+E R E++ KY+G N++VKN+DD + D
Sbjct: 285 VEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKYQGVNLFVKNLDDSIDD 344
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E+L+ F+ G ITS KVMR E G +KGFGFVCFSSPEEA+KA+ + ++ KPLYVA
Sbjct: 345 EKLQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVA 404
Query: 368 IAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVP 418
IAQRK+ R++ L Q++Y Q A ++A + P ++Y PP V
Sbjct: 405 IAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGIPGQFMPPMFYGVMPPRGVPFNG 464
Query: 419 PRPGLM 424
P P M
Sbjct: 465 PNPQQM 470
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 193/432 (44%), Positives = 265/432 (61%), Gaps = 44/432 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ LF+ FS + S+RVC+D+ T RS Y YVN+ DA RA++
Sbjct: 12 ASLYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQTPDAERALD 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP R+SGV N+F+KNL + ID+ + + F NFGNI+SCKV
Sbjct: 72 TMNFDPVFGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKDIDHKAIYDTFSNFGNILSCKV 131
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
AT E+G SKG+G YVG+FI ++ R+ + K
Sbjct: 132 ATDENGVSKGYG---------------------------YVGKFIPRAQRMREIGETTRK 164
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D + T++ LV+ FSKFGKI S ++ + E+ S+GFGFV+F+NP+DA A++
Sbjct: 165 FTNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVMK-EDDKSKGFGFVSFENPEDAEAAVK 223
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
MN + S K LY RAQKKAER+ L+ ++E + ERI +Y+G N+Y+KN+DD V D
Sbjct: 224 EMNEYQLPSGKKLYVGRAQKKAERQAELKRRYEMLKLERIQQYEGVNLYLKNLDDSVDDA 283
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+L+ F + G ITSAKVM DEKG +KGFGFVCFSSP+EA++AV+ + L KPLYVA+
Sbjct: 284 QLRKAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPDEATRAVSEMNNQKLGNKPLYVAL 343
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANV-------------IPSGYPSLYYTTPPGIVS 415
AQRKEDR+A L Q Q + + + + +P P Y T P
Sbjct: 344 AQRKEDRKAQLASQLVQRVNALRFQTVGMGQMYSGSGYFFPTMPQAGPRAYLTALPAGAP 403
Query: 416 QVPPRPGLMYQP 427
QV P M P
Sbjct: 404 QVRATPRWMSSP 415
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
+ + ML++ P++QKQ+LGERL+PL+ + DL KITGMLLEMDN ELL +LESP+ L
Sbjct: 559 LTSSMLSSAPPQEQKQMLGERLFPLIMEIHKDLAGKITGMLLEMDNGELLNMLESPDLLN 618
Query: 595 VK----VEEAVQ 602
K VEE Q
Sbjct: 619 AKKMCNVEEEEQ 630
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 203/479 (42%), Positives = 288/479 (60%), Gaps = 17/479 (3%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
PASLYVG+L P V++ L+D FS S++S+RVC+D+ T S Y YVNF +AI
Sbjct: 34 PASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAI 93
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
E N+T + G++ RI WS RDP RK G N+F+KNL IDN L E F FGNI+S K
Sbjct: 94 EQLNYTPIKGRLCRIMWSQRDPALRKKGSGNIFIKNLHPDIDNKALFETFSVFGNILSSK 153
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAA 188
+AT E GKSKG GFV FE E SA AI+ LNG + + IYV + K+ D L A
Sbjct: 154 IATDETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKA 213
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
+TN+++KN++ + T+E E F+K+G + S + + E+G +GFGFV+F+ +DA +A+
Sbjct: 214 HFTNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAV 273
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
E +NG+ + L+ +RAQKK ER Q L+ Q+E R E++ KY+G N++VKN+DD + DE
Sbjct: 274 EELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDE 333
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+LK F+ GTITS +VMR + G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVAI
Sbjct: 334 KLKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 393
Query: 369 AQRKEDR--------QAHLQLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVPP 419
AQRK+ R QA Q++Y Q A ++A + P ++Y PP V P
Sbjct: 394 AQRKDVRRSQLAQQIQARTQMRYQQATAAAAAAAAGIPGQFMPPMFYGVMPPRGVPFNGP 453
Query: 420 RPGLM--YQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
P M P R G G+ P + F + +P N + + R + + +V A
Sbjct: 454 NPQQMNGVPPQQFRNG---PGYGMPPQGGFPRNGVP-NQFYQKNQRQALGEELYKKVSA 508
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 362 bits (928), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 218/523 (41%), Positives = 312/523 (59%), Gaps = 53/523 (10%)
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPS 185
+CKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L +
Sbjct: 1 ACKVVRDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 59
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA+
Sbjct: 60 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 119
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD +
Sbjct: 120 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 179
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLY
Sbjct: 180 DDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 238
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYT 408
VA+AQRKE+RQAHL QY Q MA + VI PSGY + YY
Sbjct: 239 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY- 297
Query: 409 TPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN 467
PP ++Q+ P P W A G RP FQ P + P R M
Sbjct: 298 -PPSQIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMR 341
Query: 468 --GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKG 515
+ +P+V + S+Q+ ++ + VP + + LN
Sbjct: 342 PASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQ 401
Query: 516 SGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGML 575
V++ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGML
Sbjct: 402 PQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGML 459
Query: 576 LEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
LE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 460 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 502
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 149/262 (56%), Gaps = 21/262 (8%)
Query: 40 SVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI----SWSCRDPD-- 93
+ +V +D S YG+V+F + A RAIE N L+ + + + S R+ +
Sbjct: 1 ACKVVRDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 58
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153
AR N+++KN E +D+ RL+++F FG +S KV T E GKSKG GFV FE E A
Sbjct: 59 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 118
Query: 154 NAAIENLNGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSD 201
A++ +NG + K+IYVGR KK +R + +Y NL++KNLD
Sbjct: 119 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 178
Query: 202 VTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+ +E L ++FS FG I S + E G S+GFGFV F +P++A +A+ MNG ++ +K L
Sbjct: 179 IDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 237
Query: 262 YAARAQKKAEREQILRHQFEEK 283
Y A AQ+K ER+ L +Q+ ++
Sbjct: 238 YVALAQRKEERQAHLTNQYMQR 259
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 66 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 124
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 125 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 183
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 184 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 242
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 243 QRKEER-----QAHLTNQYMQRMAS 262
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 362 bits (928), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 196/446 (43%), Positives = 274/446 (61%), Gaps = 18/446 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL V + +L FS+ +A+VRVC+D +G S YGYVNF S +A RA+E
Sbjct: 2 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T L GK +R+ +S RDP RKSG ANLFVKNL +ID+ L E+F +FG I+SCKV
Sbjct: 62 ALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT G+SKG+GFVQ+ETEESA AAI LNG +++++VG +++ DR + K+T
Sbjct: 122 ATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREV-----KFT 176
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL ++ +E+ L ++F+ FG+I S ++ RD +G S+ FGFVNF P+ A A+E
Sbjct: 177 NVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKA 236
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG IG K LY RAQKK ER+ L+ +F R ++ K G N+Y+KNIDD + DE LK
Sbjct: 237 NGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLK 296
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F + G + S KVM D +G +KG GFV F++ E +A+N +G ++ +KPLYV +AQ
Sbjct: 297 KLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQP 356
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLR 431
KE+R+A L +AQ + S Y P + P PG + P G
Sbjct: 357 KEERKAMLMAHFAQRNLAMAASQ------------YAGPQQVYFGHPSSPGPIAPPQGAV 404
Query: 432 TGWRANGFVPPTRPAFQVSPLPVNPK 457
G+ + FVP P V P+ P+
Sbjct: 405 FGFPQH-FVPGMGPISPVMMPPLRPE 429
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 361 bits (927), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 193/430 (44%), Positives = 274/430 (63%), Gaps = 14/430 (3%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
+ T ASLYVGDL P V++ L+D FS +++S+RVC+D+ T S Y YVNF + HDA
Sbjct: 30 SETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNF-NDHDA 88
Query: 67 IR-AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+ AIE N T + GK+ RI WS RDP RK G N+F+KNL IDN L + F FGN
Sbjct: 89 AKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGN 148
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VL 183
I+S KVAT E GKSKG G+V FE +ESA+ AI+ LNG + + IYVG + K +R
Sbjct: 149 ILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKF 208
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A +TN+++KN++++ T++ E +KFGK S+++ R G ++GFGFVNF N +D
Sbjct: 209 EEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHED 268
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A + +E +N + + LY RAQKK ER+Q L+ Q+E R E++ KY+G N+++KN+DD
Sbjct: 269 AVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDD 328
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ D++L+ F+ GTITSAKVM E G +KGFGFVCFS+PEEA+KA+ + ++ KP
Sbjct: 329 SIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKP 388
Query: 364 LYVAIAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGI 413
LYVAIAQRK+ R++ L Q+++ Q A ++A +P + P Y PP
Sbjct: 389 LYVAIAQRKDVRRSQLAQQIQARNQMRFQQASAAAAAAAAAGMPGQFMPPMFYGVMPPRG 448
Query: 414 VSQVPPRPGL 423
V P P +
Sbjct: 449 VPFNGPNPQM 458
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 195/435 (44%), Positives = 262/435 (60%), Gaps = 60/435 (13%)
Query: 6 PTATTPA------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVN 59
PT+ PA SLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN
Sbjct: 36 PTSAAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVN 95
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
+ S D +A+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 96 YNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDT 155
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + +K+++VG I K
Sbjct: 156 FAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKK 215
Query: 180 DRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVN 237
+R+ A +TN+++KN+D DV++E E F K G I S IARDE G SRGFGFVN
Sbjct: 216 ERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVN 275
Query: 238 FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVY 297
+ + A A++A+N + + LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y
Sbjct: 276 YIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLY 335
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRD----------------------------- 328
+KN++DDV DE+L+ F+ GTITSAKVMRD
Sbjct: 336 IKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEESKEEAEKTEESK 395
Query: 329 -------------EK----------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
EK G +KGFGFVCFS+P+EA+KAV + M+ KPLY
Sbjct: 396 EGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLY 455
Query: 366 VAIAQRKEDRQAHLQ 380
VA+AQRK+ R+ L+
Sbjct: 456 VALAQRKDVRKNQLE 470
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 159/290 (54%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F + G + S C+ A + +S G+ +V + + E A
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNSSEDGEKA 105
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + K I S R PA + T N+F+KNLD + + L + F+
Sbjct: 106 LEELNYTVIKGKPCR----IMWSQR---DPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE G S+G+GFV+++ + A A++ +NG ++ K ++ K ER
Sbjct: 159 FGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER- 217
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +N+YVKNID DV+DEE + F + G ITSA + RDE+G +
Sbjct: 218 ---MSKFEE------MKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKS 268
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV + E AS AV+ + + LYV AQ+K +R+ L+ QY
Sbjct: 269 RGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQY 318
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 195/435 (44%), Positives = 262/435 (60%), Gaps = 60/435 (13%)
Query: 6 PTATTPA------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVN 59
PT+ PA SLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN
Sbjct: 36 PTSAAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVN 95
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
+ S D +A+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 96 YNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDT 155
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + +K+++VG I K
Sbjct: 156 FAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKK 215
Query: 180 DRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVN 237
+R+ A +TN+++KN+D DV++E E F K G I S IARDE G SRGFGFVN
Sbjct: 216 ERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVN 275
Query: 238 FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVY 297
+ + A A++A+N + + LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y
Sbjct: 276 YIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLY 335
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRD----------------------------- 328
+KN++DDV DE+L+ F+ GTITSAKVMRD
Sbjct: 336 IKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEEAKEESEKTEESN 395
Query: 329 -------------EK----------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
EK G +KGFGFVCFS+P+EA+KAV + M+ KPLY
Sbjct: 396 EGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLY 455
Query: 366 VAIAQRKEDRQAHLQ 380
VA+AQRK+ R+ L+
Sbjct: 456 VALAQRKDVRKNQLE 470
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 159/290 (54%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F + G + S C+ A + +S G+ +V + + E A
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNSSEDGEKA 105
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + K I S R PA + T N+F+KNLD + + L + F+
Sbjct: 106 LEELNYTVIKGKPCR----IMWSQR---DPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE G S+G+GFV+++ + A A++ +NG ++ K ++ K ER
Sbjct: 159 FGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER- 217
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +N+YVKNID DV+DEE + F + G ITSA + RDE+G +
Sbjct: 218 ---MSKFEE------MKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKS 268
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV + E AS AV+ + + LYV AQ+K +R+ L+ QY
Sbjct: 269 RGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQY 318
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 206/503 (40%), Positives = 288/503 (57%), Gaps = 68/503 (13%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
AV P A+ ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+
Sbjct: 54 AVPHPQAS--ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYN 111
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
+ D +A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F
Sbjct: 112 TTTDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFA 171
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FGNI+SCKVA E G SKG+GFV +ET+E+A+ AI+++NG + +K+++VG I K DR
Sbjct: 172 AFGNILSCKVAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDR 231
Query: 182 V--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNF 238
A +TN+++KN+ + T+E E F KFG + S +ARD++ G SRGFGFVNF
Sbjct: 232 QSKFEEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNF 291
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
N + A A++ +NG + LY RAQKK ERE+ LR +E R E+ KY+G N+YV
Sbjct: 292 INHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYV 351
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEK---------------------------- 330
KN+DDDV DE+L+ F+ G ITSAKVMRD
Sbjct: 352 KNLDDDVDDEKLRELFTPFGAITSAKVMRDSAAETAEAEKKEEEKNKENKKEGDAEEGEK 411
Query: 331 ----------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED 374
G +KGFGFVCFS+P+EA+KA+ + M++ KPLYVA+AQRK+
Sbjct: 412 ADGEKKEAPKSEKRTVGKSKGFGFVCFSNPDEATKAIADMNQNMVNGKPLYVALAQRKDV 471
Query: 375 RQAHLQLQY-AQHMAGIEGSSANVIPSGYPSLYYTTP--------PGIVSQV-------P 418
R+ L+ A++ ++ ++A +G P Y P PG + P
Sbjct: 472 RKGQLEASIQARNQIRMQQAAAQ---AGMPPQYMQAPMFYPPGQQPGFMPAAGGRGMPYP 528
Query: 419 PRPGLMYQPLGLRTGWRANGFVP 441
P+ G+ G R GF P
Sbjct: 529 PQAGMPMPAQGGRPAQFPGGFPP 551
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 49/69 (71%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
+L LAA P QQKQ+LGE L+P ++ +P+L KITGMLLEM+N EL+ L+E +L
Sbjct: 686 VLQAQLAAAGPGQQKQVLGEALFPKIQAMQPELAGKITGMLLEMENPELVNLIEDESALR 745
Query: 595 VKVEEAVQV 603
KV+EA+ V
Sbjct: 746 NKVDEALTV 754
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 204/498 (40%), Positives = 288/498 (57%), Gaps = 63/498 (12%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
AV P A+ ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+
Sbjct: 53 AVPQPQAS--ASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYN 110
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
+ D +A+E N+T ++G+ RI WS RDP RK+G N+F+KNL +IDN L + F
Sbjct: 111 TTSDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFA 170
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FGNI+SCKVA E G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K DR
Sbjct: 171 AFGNILSCKVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDR 230
Query: 182 V--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
A +TN+++KN++S+ +++ + F+K+G++ S +ARD+ G SRGFGFVNF
Sbjct: 231 QSKFEEMKANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFT 290
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ A +A+E +NG + LY RAQKK ERE+ LR +E R+E+ KY+G N+Y+K
Sbjct: 291 THEAASQAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARQEKANKYQGVNLYIK 350
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDE------------------------------ 329
N+ DDV DE+L+A FS+ G ITSAKVMRD
Sbjct: 351 NLSDDVDDEKLRAMFSEFGPITSAKVMRDSISEGEDEEKAEEETPAPEAEVKKEDSEADA 410
Query: 330 -----------------KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
G +KGFGFVCFS+PE+A+KAV + M+ KPLYVA+AQRK
Sbjct: 411 DSQEAADKKDAKKGDKKLGKSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRK 470
Query: 373 EDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY---PSLYYTTPPGIVSQ------VPPRP 421
+ R+ L+ +Q M ++ +P+ + P + PG + Q PP
Sbjct: 471 DVRKNQLEQSIQARNQMRMQSAAAQAGMPNQFMQQPVYFPGQQPGFLPQGGRGMPFPPNM 530
Query: 422 GLMYQPLGLRTGWRANGF 439
G M G R G GF
Sbjct: 531 G-MPNIQGGRPGQYPAGF 547
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 45/59 (76%)
Query: 547 QQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
QQKQI+GE ++P + +P+L KITGMLLEM+NSEL+ L+E ++ +KV+EA+ V +
Sbjct: 681 QQKQIIGELIFPKIAAQQPELAGKITGMLLEMENSELITLIEDDNAMKLKVDEALGVYE 739
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 185/401 (46%), Positives = 262/401 (65%), Gaps = 7/401 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDL VT+ +L++ FS + S+RVC+D T RS Y YVNF S DA AI+
Sbjct: 32 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAID 91
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
V N ++GK +R+ +S RDP R+SGV N+F+KNL ++IDN L + F FG I S KV
Sbjct: 92 VLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKV 151
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A G SKG+GFVQFET E+A AAI+N+NG + DK++YVG F +++DR A K+
Sbjct: 152 AMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADRSTQGEA-KFN 210
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL ++++E L EKF++ G + S +I +DE G S+GFGFV F++P+ A A+E +
Sbjct: 211 NVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENL 270
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+G K RAQKKAERE L+ +FE +R+ER+ K G+N+Y+KN+++ DE+L+
Sbjct: 271 DGYTEDEKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKLR 330
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F++ GTITS +VMRD G ++G FV FSSP+EA++AV +G M+ KPLYVA+AQR
Sbjct: 331 ELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQR 390
Query: 372 KEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG 412
KE+ A + AG A SG + T PG
Sbjct: 391 KEEPHA------GRWHAGYGPVHATAGCSGRADVLRPTAPG 425
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 163/292 (55%), Gaps = 30/292 (10%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
++L+V +L S+ +L E F + G ++S +V +S G+ +V F++ A AI
Sbjct: 31 TSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAI 90
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPS---PAAKYT---NLFMKNLDSDVTEEHLVEKF 211
+ LN + K I RVL S PA + + N+F+KNLD + + L++ F
Sbjct: 91 DVLNFQVINGKPI----------RVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTF 140
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
++FG I S +A D G S+G+GFV F+ + A+ A++ +NG + K +Y Q++A+
Sbjct: 141 AQFGTITSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRAD 200
Query: 272 REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG 331
R +F +NVYVKN+ ++++DE+L+ F++ G +TS +M+DE+G
Sbjct: 201 RSTQGEAKF-------------NNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEG 247
Query: 332 INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+KGFGFVCF SPE A+ AV GY K V AQ+K +R+A L+ ++
Sbjct: 248 KSKGFGFVCFESPEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAELKAKF 299
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 194/437 (44%), Positives = 263/437 (60%), Gaps = 59/437 (13%)
Query: 3 VVPPTATTPA------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYG 56
V PT+ PA SLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y
Sbjct: 33 VSTPTSAAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYA 92
Query: 57 YVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRL 116
YVN+ S D +A+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L
Sbjct: 93 YVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKAL 152
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
+ F FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + +K+++VG I
Sbjct: 153 HDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHI 212
Query: 177 KKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
K +R+ A +TN+++KN+D DV++E + F K G I S IARD+ G SRGFG
Sbjct: 213 PKKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFG 272
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS 294
FVN+ + A A++A+N + + LY RAQKK ERE+ LR Q+E R E+ KY+G
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGV 332
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-------------------------- 328
N+Y+KN++DDV DE+L+ F+ GTITSAKVMRD
Sbjct: 333 NLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDESKEESEEAK 392
Query: 329 ----------------------EK---GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
EK G +KGFGFVCFS+P+EA+KAV + M+ KP
Sbjct: 393 DESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIENKP 452
Query: 364 LYVAIAQRKEDRQAHLQ 380
LYVA+AQRK+ R+ L+
Sbjct: 453 LYVALAQRKDVRKNQLE 469
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 159/290 (54%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F + G + S C+ A + +S G+ +V + + E A
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNSSEDGEKA 105
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + K I S R PA + T N+F+KNLD + + L + F+
Sbjct: 106 LEELNYTVIKGKPCR----IMWSQR---DPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE G S+G+GFV+++ + A A++ +NG ++ K ++ K ER
Sbjct: 159 FGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER- 217
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +N+YVKNID DV+DE+ + F + G ITSA + RD++G +
Sbjct: 218 ---MSKFEE------MKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKS 268
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV + E AS AV+ + + LYV AQ+K +R+ L+ QY
Sbjct: 269 RGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQY 318
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 180/374 (48%), Positives = 251/374 (67%), Gaps = 1/374 (0%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGR-STCYGYVNFLSPHDAIRAIE 71
SLYVGDL V + +L FS+ +AS VC+D GR S YGYVNF+S DA RA+E
Sbjct: 61 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 120
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T ++GK +R+ +S RDP RKSG+AN+F+KNL +IDN L EMF +FG I+S KV
Sbjct: 121 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 180
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT +GKSKG+GF+QFE+E SA AI LNG ++I+VG FI++ +R A +T
Sbjct: 181 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 240
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL ++ L+ +FS FG I S ++ RD NG SR FGFVNF+ + AR A++ +
Sbjct: 241 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 300
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG IG VLY ARAQKK+ER+ L+ +FE + ++ K + N+Y+KN+DDD+ DE L+
Sbjct: 301 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 360
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F G + S KVM D G +KG GFV F++ E+A+ A+ +G M+ +KPLYVA+AQR
Sbjct: 361 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 420
Query: 372 KEDRQAHLQLQYAQ 385
KE+R+A L +A+
Sbjct: 421 KEERKAFLAAHFAR 434
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 185/394 (46%), Positives = 252/394 (63%), Gaps = 11/394 (2%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
V +A P SLYVGDLHPDV + L + FS + S+RVC+D+ T RS Y YVNF P
Sbjct: 9 VASSAKKP-SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERP 67
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA +A+E N +HG+ +RI WS R P + N+FVKNL S+++ L F F
Sbjct: 68 EDAKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVF 127
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
GNI+SCK+A E KSKG+GFVQFETEE+A AI+ NG KRIYVGRF +S+R
Sbjct: 128 GNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSER-- 185
Query: 184 PSPAAK-----YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
S AK +TN+F+KN + +E L + F+KFGKI S ++ D +G GFGFV F
Sbjct: 186 -SEQAKRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAF 244
Query: 239 DNPDDARRALEAMNGSVI--GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
+NPDDA +A++ M + + LY +R QKK ER L +++ ++ ER +Y+G+N+
Sbjct: 245 ENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANL 304
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
Y+KN+DD + D+ L+ F + G + SAKVMR + G +KGFGFVCF P+EA KA+ G
Sbjct: 305 YLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKG 364
Query: 357 YMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
M+ KPLYV++AQRKEDR+A + QY Q +A I
Sbjct: 365 KMVCTKPLYVSMAQRKEDRKAFIASQYMQRIASI 398
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LY+ +L + D L +F E+ ++ S +V + S GRS +G+V F P +A++A+
Sbjct: 302 ANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMR-SDDGRSKGFGFVCFDKPDEAVKAMT 360
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ 117
+ K L +S + R D RK+ +A+ + ++ I ++R+Q
Sbjct: 361 AMKGKMVCTKPLYVSMAQRKED-RKAFIASQY----MQRIASIRMQ 401
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 180/374 (48%), Positives = 251/374 (67%), Gaps = 1/374 (0%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGR-STCYGYVNFLSPHDAIRAIE 71
SLYVGDL V + +L FS+ +AS VC+D GR S YGYVNF+S DA RA+E
Sbjct: 85 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 144
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T ++GK +R+ +S RDP RKSG+AN+F+KNL +IDN L EMF +FG I+S KV
Sbjct: 145 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 204
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT +GKSKG+GF+QFE+E SA AI LNG ++I+VG FI++ +R A +T
Sbjct: 205 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 264
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL ++ L+ +FS FG I S ++ RD NG SR FGFVNF+ + AR A++ +
Sbjct: 265 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 324
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG IG VLY ARAQKK+ER+ L+ +FE + ++ K + N+Y+KN+DDD+ DE L+
Sbjct: 325 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 384
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F G + S KVM D G +KG GFV F++ E+A+ A+ +G M+ +KPLYVA+AQR
Sbjct: 385 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 444
Query: 372 KEDRQAHLQLQYAQ 385
KE+R+A L +A+
Sbjct: 445 KEERKAFLAAHFAR 458
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 193/461 (41%), Positives = 280/461 (60%), Gaps = 50/461 (10%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ ++AS+RVC+D+ T RS Y YVN+ S D
Sbjct: 55 PHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTAD 114
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 115 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 174
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E+G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR
Sbjct: 175 ILSCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 234
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A +TN+++KN+ ++ +++ E F K+G I S +ARD+ G SRGFGFVNF +
Sbjct: 235 EEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHES 294
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A+E ++G + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+DD
Sbjct: 295 AAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDD 354
Query: 304 DVTDEELKAHFSQCGTITSAKVMRD----------------------------------- 328
DV DE+L+ F++ G ITSAKVMRD
Sbjct: 355 DVDDEKLRQMFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDAD 414
Query: 329 ---------EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
+ G +KGFGFVCFS+P++A+KAV + M++ KPLYVA+AQRK+ R++ L
Sbjct: 415 KKADKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQL 474
Query: 380 Q--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQ 416
+ +Q + + ++A +P Y P ++Y PG + Q
Sbjct: 475 EASIQARNQLRMQQAAAAAGMPQQYMQPPVFYGQQPGFIPQ 515
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 47/69 (68%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
+L LA P QQKQILGE ++P ++ +L KITGMLLEM+NSEL+ L+E +L
Sbjct: 649 VLQSQLAGAQPAQQKQILGEIIFPKIQAINSELAGKITGMLLEMENSELVNLIEDDVALK 708
Query: 595 VKVEEAVQV 603
KV+EA+ V
Sbjct: 709 AKVDEALAV 717
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 193/461 (41%), Positives = 280/461 (60%), Gaps = 50/461 (10%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ ++AS+RVC+D+ T RS Y YVN+ S D
Sbjct: 54 PHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTAD 113
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 114 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 173
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E+G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR
Sbjct: 174 ILSCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 233
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A +TN+++KN+ ++ +++ E F K+G I S +ARD+ G SRGFGFVNF +
Sbjct: 234 EEMKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHES 293
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A+E ++G + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+DD
Sbjct: 294 AAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDD 353
Query: 304 DVTDEELKAHFSQCGTITSAKVMRD----------------------------------- 328
DV DE+L+ F++ G ITSAKVMRD
Sbjct: 354 DVDDEKLRQMFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDAD 413
Query: 329 ---------EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
+ G +KGFGFVCFS+P++A+KAV + M++ KPLYVA+AQRK+ R++ L
Sbjct: 414 KKADKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQL 473
Query: 380 Q--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQ 416
+ +Q + + ++A +P Y P ++Y PG + Q
Sbjct: 474 EASIQARNQLRMQQAAAAAGMPQQYMQPPVFYGQQPGFIPQ 514
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 47/69 (68%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
+L LA P QQKQILGE ++P ++ +L KITGMLLEM+NSEL+ L+E +L
Sbjct: 648 VLQAQLAGAQPAQQKQILGEIIFPKIQAINSELAGKITGMLLEMENSELVNLIEDDVALK 707
Query: 595 VKVEEAVQV 603
KV+EA+ V
Sbjct: 708 AKVDEALAV 716
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 191/404 (47%), Positives = 259/404 (64%), Gaps = 36/404 (8%)
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FG
Sbjct: 109 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 168
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV-- 182
NI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 169 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 227
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
L + A ++TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +
Sbjct: 228 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHE 287
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
DAR+A++ MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+D
Sbjct: 288 DARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 347
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
D + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ K
Sbjct: 348 DGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 406
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSL 405
PLYVA+AQRKE+RQAHL QY Q MA + VI PSGY +
Sbjct: 407 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAA 466
Query: 406 YYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQV 449
YY PP ++Q+ P P W A G P +PA V
Sbjct: 467 YY--PPSQIAQLRPSP-----------RWTAQGARP--QPAVHV 495
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 164/290 (56%), Gaps = 21/290 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 144 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 201
Query: 72 VKNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
N L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG
Sbjct: 202 KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGP 261
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---- 181
+S KV T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 262 ALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 321
Query: 182 ------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GF
Sbjct: 322 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGF 380
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
GFV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 381 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 430
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 64/80 (80%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 505 MLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVD 564
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV VL+ +AK + Q+A+H
Sbjct: 565 EAVAVLQAHQAKEAAQKAVH 584
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L D F +F SV+V D + G+S +G+V+F DA +A++
Sbjct: 237 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDES-GKSKGFGFVSFERHEDARKAVDE 295
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N +L+GK + + + + D R GV NL+VKNL + ID+ R
Sbjct: 296 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 354
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG I S KV E G+SKG GFV F + E A A+ +NG V K +YV
Sbjct: 355 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 413
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDS 200
+K +R A TN +M+ + S
Sbjct: 414 QRKEER-----QAHLTNQYMQRMAS 433
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 200/499 (40%), Positives = 287/499 (57%), Gaps = 65/499 (13%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D
Sbjct: 58 PHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSD 117
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 118 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 177
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E+G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR
Sbjct: 178 ILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 237
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A +TN+++KN+ +VT++ + F+ FG + S +ARD+ G SRGFGFVNF +
Sbjct: 238 EEMKANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEA 297
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A++ +NG + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+DD
Sbjct: 298 AAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKANKYQGVNLYIKNLDD 357
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEK--------------------------------- 330
DV DE+L+ F+ G ITSAKVMRD
Sbjct: 358 DVDDEKLRQLFADFGPITSAKVMRDNATDSGNEDEGSSEEKETEAKKDEEEEEKPEEAKT 417
Query: 331 -------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
G +KGFGFVCFS+P++A+KAV + M++ KPLYVA+AQR
Sbjct: 418 DDKEDADKKSDKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQR 477
Query: 372 KEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTT------PPGIVSQVPPRP 421
K+ R++ L+ +Q + + ++A +P Y P ++Y P G P+P
Sbjct: 478 KDVRKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPPVFYAAGQQPVFPQGGRGMAFPQP 537
Query: 422 GL-MYQPLGLRTGWRANGF 439
G+ M G R G G+
Sbjct: 538 GMAMPAVQGGRPGQFPGGY 556
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 193/440 (43%), Positives = 263/440 (59%), Gaps = 62/440 (14%)
Query: 3 VVPPTATTPA------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYG 56
V PT+ PA SLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y
Sbjct: 33 VPTPTSAAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYA 92
Query: 57 YVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRL 116
YVN+ S D +A+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L
Sbjct: 93 YVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKAL 152
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
+ F FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + +K+++VG I
Sbjct: 153 HDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHI 212
Query: 177 KKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
K +R+ A +TN+++KN+D DV+++ + F K G I S IARD+ G SRGFG
Sbjct: 213 PKKERMSKFEEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFG 272
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS 294
FVN+ + A A++A+N + + LY RAQKK ERE+ LR Q+E R E+ KY+G
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGV 332
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-------------------------- 328
N+Y+KN++DDV DE+L+ F+ GTITSAKVMRD
Sbjct: 333 NLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDETKEETEKPE 392
Query: 329 -------------------------EKGI---NKGFGFVCFSSPEEASKAVNTFHGYMLH 360
EK I +KGFGFVCFS+P+EA+KAV + M+
Sbjct: 393 EAKDESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIE 452
Query: 361 RKPLYVAIAQRKEDRQAHLQ 380
KPLYVA+AQRK+ R+ L+
Sbjct: 453 NKPLYVALAQRKDVRKNQLE 472
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 159/290 (54%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F + G + S C+ A + +S G+ +V + + E A
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNSSEDGEKA 105
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + K I S R PA + T N+F+KNLD + + L + F+
Sbjct: 106 LEELNYTVIKGKPCR----IMWSQR---DPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE G S+G+GFV+++ + A A++ +NG ++ K ++ K ER
Sbjct: 159 FGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER- 217
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +N+YVKNID DV+D++ + F + G ITSA + RD++G +
Sbjct: 218 ---MSKFEE------MKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKS 268
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV + E AS AV+ + + LYV AQ+K +R+ L+ QY
Sbjct: 269 RGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQY 318
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L +P QQKQ+LGE LYP + + +P+L KITGMLLEMDNSEL+ L +L KV+E
Sbjct: 660 LQGAAPGQQKQMLGEALYPKIAEMQPELAGKITGMLLEMDNSELINLTADEAALRAKVDE 719
Query: 600 AVQV 603
A+ V
Sbjct: 720 AMSV 723
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 179/374 (47%), Positives = 251/374 (67%), Gaps = 1/374 (0%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTG-RSTCYGYVNFLSPHDAIRAIE 71
SLYVGDL V + +L FS+ +AS VC+D G +S YGYVNF+S DA RA+E
Sbjct: 62 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAME 121
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T ++GK +R+ +S RDP RKSG+AN+F+KNL +IDN L EMF +FG I+S KV
Sbjct: 122 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 181
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT +GKSKG+GF+QFE+E SA AI LNG ++I+VG FI++ +R A +T
Sbjct: 182 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 241
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL ++ L+ +FS FG I S ++ RD NG SR FGFVNF+ + AR A++ +
Sbjct: 242 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 301
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG IG VLY ARAQKK+ER+ L+ +FE + ++ K + N+Y+KN+DDD+ DE L+
Sbjct: 302 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 361
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F G + S KVM D G +KG GFV F++ E+A+ A+ +G M+ +KPLYVA+AQR
Sbjct: 362 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 421
Query: 372 KEDRQAHLQLQYAQ 385
KE+R+A L +A+
Sbjct: 422 KEERKAFLAAHFAR 435
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 198/461 (42%), Positives = 272/461 (59%), Gaps = 26/461 (5%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T+ ASLYVG+L P V++ L+D FS S++S+RVC+D+ T S Y YVNF
Sbjct: 39 TSSASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKT 98
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
AIE N+ + G RI WS RDP RK G N+F+KNL IDN L + F FGNI+S
Sbjct: 99 AIEKLNYAPIKGVPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILS 158
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSP 186
CK+AT E G S+G GFV FE +E+A AI+ +NG + + +YV + + K DR L
Sbjct: 159 CKIATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEA 218
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
A +TN+++KN+ D +E E F+K G I S + +D G RGFGFVN++N +DA +
Sbjct: 219 KANFTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAK 278
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
A+E +N + + L+ RAQKK ER Q L+ Q+E R E++ KY+G N++VKN+DD +
Sbjct: 279 AVEELNETDFKGQTLHVGRAQKKHERLQELKKQYEAFRLEKLEKYQGVNLFVKNLDDTID 338
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
D++L+ F+ GTITS KVMR E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYV
Sbjct: 339 DQKLEEEFAPYGTITSVKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 398
Query: 367 AIAQRKEDRQAHL--------QLQYAQ----HMAGIEGSSANVIPSGYPSLYYTTPPGIV 414
AIAQRK+ R++ L Q++Y Q A G +P P Y PP V
Sbjct: 399 AIAQRKDVRRSQLAQQIQARNQMRYQQVTAAAAAAAAGMRGQFMP---PMFYGVMPPRGV 455
Query: 415 SQVPPRPGLMYQPLGLRTGWRANGFVPPTR----PAFQVSP 451
P P Q + G NG VPP + P + V P
Sbjct: 456 PFNGPNP----QQMAAMGGMPKNG-VPPQQFRNGPVYGVPP 491
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 546 EQQKQILGERLYPLVEKHKPDLVA--KITGMLLEMDNSELLLLLESPESLAVKVEEA 600
++Q+Q+LGE+LY V D A KITGM+L++ + E++ LLES E +EA
Sbjct: 513 QKQRQVLGEQLYKKVFAKTSDEEAAGKITGMILDLPSQEVVPLLESDELFDQHFKEA 569
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 193/426 (45%), Positives = 273/426 (64%), Gaps = 26/426 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY+GDL P+V +G LF+ F+ +AS+RVC+D+ T RS Y YVN+ DA RA++
Sbjct: 9 ASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAERALD 68
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T++ GK RI WS RDP R+SGV N+FVKNL E IDN +L + F FGNI+SCKV
Sbjct: 69 SMNFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKV 128
Query: 132 ATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY 190
T + G SKG+G+V +ET E+A +AIE L+G + K + VG F+++ +R A +
Sbjct: 129 VTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFMRRDNR---PGQADW 185
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN+F+KN+ + TE+ L E+F FG++ S E S GFGFVNF + A A++
Sbjct: 186 TNVFIKNIPFEWTEDKLREEFEGFGEVVS--AKPKEVQGSLGFGFVNFATHEAAAAAVKE 243
Query: 251 MNGSVIG--------SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
MN +KVL+ RAQKKAERE+ LR ++E ++ +RI K++G N+YVKN+D
Sbjct: 244 MNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKFQGVNLYVKNLD 303
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
D VTD+ L+ FS GTITSA+VM+D K GI++GFGFVC+S+PE+A++AVN +G ++
Sbjct: 304 DTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKIILG 363
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 421
KP++VA+AQR++ R+A L+ Q+ Q + G P P PG+ RP
Sbjct: 364 KPIFVALAQRRDVRRAQLEAQHNQGRGNLPGPMGGAYPGAVPM------PGMY-----RP 412
Query: 422 GLMYQP 427
G QP
Sbjct: 413 GPGMQP 418
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 354 bits (908), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 206/468 (44%), Positives = 283/468 (60%), Gaps = 15/468 (3%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR-AIEV 72
LYVG+L P VT+ L+D FS S++S+RVC+D+ T S Y YVNF H+A R AIE
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHD-HNAGRTAIEK 100
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+T + G+ RI WS RDP RK G N+F+KNL +IDN L + F FGNI+SCK+A
Sbjct: 101 LNYTPIKGRPCRIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFGNILSCKIA 160
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKY 190
T E GKS+ GFV FE EE+A AI+ +NG + +YV + K DR L + +
Sbjct: 161 TDETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAPHVSKKDRQSKLDEVKSNF 220
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN+++KN+DS+ T+E + FS +G I S ++ RD G RGFGFVNF++ + A +A E
Sbjct: 221 TNVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEE 280
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N + + LY RAQKK ER Q L+ Q+E R E++ KY+G N++VKN+DD V D++L
Sbjct: 281 LNDTDFKGQKLYVGRAQKKYERLQELKKQYESSRMEKLAKYQGVNLFVKNLDDSVDDQKL 340
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ GTITS KVMRDE G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVAIAQ
Sbjct: 341 EEEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 400
Query: 371 RKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY--- 425
RKE R++ L Q+Q M + ++A +G P + P +PPR G+ +
Sbjct: 401 RKEVRRSQLAQQIQARNQMRYQQATAAAAAAAGMPGQFMQ--PMFYGVMPPR-GVPFNGP 457
Query: 426 --QPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNML 471
Q + G NG VPP + P+ P Q NGN
Sbjct: 458 NPQQMAAMNGIPKNG-VPPQQFGRPAGPMYGVPPQGPQGAFPRNGNQF 504
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 354 bits (908), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 197/468 (42%), Positives = 275/468 (58%), Gaps = 59/468 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L VT+ LF+ FS+ +AS+RVC+D+ T RS Y YVN+ S D +A+E
Sbjct: 59 ASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALE 118
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + + RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 119 ELNYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 178
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K DR A
Sbjct: 179 AQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 238
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRAL 248
YTN+++KNL +DVT++ + F ++G + S IARD E G SRGFGF+NF + A +A+
Sbjct: 239 YTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAV 298
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
E +N I + LY RAQKK ERE+ LR +E R+E+ KY G N+Y+KN+DD+V DE
Sbjct: 299 EELNSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVDDE 358
Query: 309 ELKAHFSQCGTITSAKVMRD---------------------------------------- 328
+L+ F+ G ITSAKVMR+
Sbjct: 359 KLRELFAPYGPITSAKVMRETASESDEEGKETKETEEVKEVKEEEEKPKVEGAAEGEADA 418
Query: 329 --EK--------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
EK G +KGFGFVCFS+P++A+KAV + M+ KPLYVAIAQ+KE R++
Sbjct: 419 SGEKQAAARPKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVSGKPLYVAIAQKKEVRKSQ 478
Query: 379 LQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVPPRPG 422
L+ +Q + + ++ +P Y P +YY PPG P+ G
Sbjct: 479 LEASIQARNTLRMQQAAAVAGLPQTYMQPQVYY--PPGQQQAFLPQGG 524
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 108/202 (53%), Gaps = 21/202 (10%)
Query: 184 PSPAAKY----TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNF 238
PS AA + +L++ LD VTE L E FS+ G +AS+ + RD S G+ +VN+
Sbjct: 48 PSSAAAHPQASASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNY 107
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
++ D +ALE +N ++I ++ +Q R+ LR K N+++
Sbjct: 108 NSTADGEKALEELNYTLIKNRPCRIMWSQ----RDPALR------------KTGQGNIFI 151
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM 358
KN+D + ++ L F+ G I S KV +DE G +KG+GFV + + E A +A+ +G +
Sbjct: 152 KNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGML 211
Query: 359 LHRKPLYVAIAQRKEDRQAHLQ 380
L+ K +YV K+DRQ+ +
Sbjct: 212 LNEKKVYVGHHIPKKDRQSKFE 233
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 45/60 (75%)
Query: 546 EQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
+QQKQILGE ++P ++ +P+L KITGMLLEMDN EL+ L+E +L KV+EA+ V +
Sbjct: 697 QQQKQILGEAIFPKIQNFQPELAGKITGMLLEMDNQELVHLIEDESALKAKVDEALGVYQ 756
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 188/421 (44%), Positives = 256/421 (60%), Gaps = 54/421 (12%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ D RA+E
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKVA
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 174
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYT 191
E+ SKG+GFV +ET E+AN AI+N+NG + +K+++VG I K DR+ + A +T
Sbjct: 175 DENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFT 234
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEA 250
N+++KN+DS+ T+ E F K+G I S +A D E+G +RGFGFVN+ +DA +A+E
Sbjct: 235 NIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEE 294
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N S + LY RAQKK ERE+ LR Q+E R+E+ KY G N+YVKN+ D++ D+EL
Sbjct: 295 LNDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDEL 354
Query: 311 KAHFSQCGTITSAKVMRD----------------------------EK------------ 330
+ F G ITSAKVMRD EK
Sbjct: 355 RKVFEPYGAITSAKVMRDTLPADGSETPAKKEGDAEEKEAEPEKDGEKKDDVDDLSKKLD 414
Query: 331 -----------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
G +KGFGFVCFS+P+EA+KAV + M+H KPLYVA+AQRKE R++ L
Sbjct: 415 TVTIQGEKKLLGKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLYVALAQRKEVRKSQL 474
Query: 380 Q 380
+
Sbjct: 475 E 475
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 150/286 (52%), Gaps = 20/286 (6%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAAIE 158
L+V L S+ L E+F + G + S C+ A + +S G+ +V + A+E
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNVAGDGERALE 112
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
LN T + + + + D +L N+F+KNLD+ + + L + F+ FG I
Sbjct: 113 ELNYTLIKGRPCRI--MWSQRDPLLRKTGQ--GNVFIKNLDAAIDNKALHDTFAAFGNIL 168
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S +A+DEN S+G+GFV+++ + A +A++ +NG ++ K ++ K +R
Sbjct: 169 SCKVAQDENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDR----MS 224
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFG 337
+ EE +K +N+YVKNID + TD E + F + G ITSA + D E G N+GFG
Sbjct: 225 KVEE------MKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFG 278
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
FV + E+A KAV + + LYV AQ+K +R+ L+ QY
Sbjct: 279 FVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKKHEREEELRKQY 324
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 157/350 (44%), Gaps = 71/350 (20%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++++ +L + + L D F+ F ++ S +V +D S YG+V++ + A +
Sbjct: 138 TGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDENA-NSKGYGFVHYETAEAANQ 196
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPD------ARKSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + D K+ N++VKN+ + +E+F+
Sbjct: 197 AIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDSETTDNEFRELFEK 256
Query: 123 FGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+G+I S +A +E GK++G GFV + E A A+E LN + +++YVGR KK +R
Sbjct: 257 YGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKKHER 316
Query: 182 ----------VLPSPAAKYT--NLFMKNLDSDVTEEHLVEKFSKFGKIASLLI------- 222
+AKYT NL++KNL ++ ++ L + F +G I S +
Sbjct: 317 EEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDELRKVFEPYGAITSAKVMRDTLPA 376
Query: 223 ------ARDEN--------------------------------------GTSRGFGFVNF 238
A+ E G S+GFGFV F
Sbjct: 377 DGSETPAKKEGDAEEKEAEPEKDGEKKDDVDDLSKKLDTVTIQGEKKLLGKSKGFGFVCF 436
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
NPD+A +A+ +N ++ K LY A AQ+K R+ L + + + R+
Sbjct: 437 SNPDEATKAVTELNQKMVHGKPLYVALAQRKEVRKSQLEASIQARNQVRM 486
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 521 GTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
G ++ G M DM L A S QQKQ+LGE LYP + +P+L KITGMLLEMDN
Sbjct: 646 GRASNRGPMGSGIDM--AALNAASAPQQKQMLGEALYPKIHAQQPELAGKITGMLLEMDN 703
Query: 581 SELLLLLESPESLAVKVEEAVQV 603
ELL L + ++L KV+EA+ V
Sbjct: 704 EELLNLTGNDQALREKVDEALTV 726
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 179/397 (45%), Positives = 255/397 (64%), Gaps = 29/397 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDLH DVT+ LF+ F+ + S+RVC+D+ T RS Y YVN+ DA R+++
Sbjct: 84 SLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDT 143
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+T + G+ RI W RDP RKSG N+FVKNL ++IDN L + F FGNI+SCKVA
Sbjct: 144 LNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVA 203
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
++G SKG+GFV +E EESA +AI+ +NG +G K +YVG FI++++R + AKYTN
Sbjct: 204 VDDNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAERDNLA-EAKYTN 262
Query: 193 LFMKNLDSDVTEE-HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
+++KN+ S +E L E FSKFG I SL++ +D G R F F NF + D A+ A+EA+
Sbjct: 263 VYIKNMPSAWEDESRLRETFSKFGSITSLVVRKDPKG--RLFAFCNFADHDSAKAAVEAL 320
Query: 252 NGSVI-------------------------GSKVLYAARAQKKAEREQILRHQFEEKRKE 286
NG + G ++L+ Q KA R +LR +FE+ ++
Sbjct: 321 NGKRVTDAGAIKEGEDSGAEEKEEEGQKREGDQILFVGPHQSKAHRSAMLRAKFEQMNQD 380
Query: 287 RILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEE 346
R +++G N+Y+KN+DD + DE+L+ F G+ITSAKVMRDE+G+++ FGFVCF SPEE
Sbjct: 381 RNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEE 440
Query: 347 ASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
A+KAV H ++ KPLYV +A+R+E R LQ ++
Sbjct: 441 ATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRF 477
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 51/61 (83%)
Query: 545 PEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
P QKQ+LGE+L+PL+ +++P+L KITGM+LEMDN+ELL+LLES L KV+EA++VL
Sbjct: 705 PSMQKQMLGEKLFPLIARYQPELAGKITGMMLEMDNAELLILLESEAQLKAKVDEALRVL 764
Query: 605 K 605
+
Sbjct: 765 Q 765
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/473 (41%), Positives = 272/473 (57%), Gaps = 68/473 (14%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 110 ADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 169
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 170 GNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 229
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KN++ DVT+E F K+G+I S ++RD E G SRGFGFVNF +
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+ A A+EA+N + + LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y+KN
Sbjct: 290 HEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKN 349
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMR----------------------------DEKGI 332
+ DD+ DE+L+ FS G ITSAKVMR +EKG
Sbjct: 350 LSDDIDDEKLRELFSSYGNITSAKVMREAIVDVPAETEKGKEADKEKAKEAGDKSEEKGE 409
Query: 333 NK-------------------------------GFGFVCFSSPEEASKAVNTFHGYMLHR 361
+K GFGFVCFS+P+EASKAV + M+H
Sbjct: 410 SKSESEDKSKSEEKSEGKTESAKPEKRHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHG 469
Query: 362 KPLYVAIAQRKEDR----QAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP 410
KPLYVA+AQRK+ R +A +Q + + ++ P P+++Y P
Sbjct: 470 KPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMAQPFMQPAVFYGAP 522
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 192/437 (43%), Positives = 276/437 (63%), Gaps = 30/437 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DV + LF+ FS+ +AS+RVC+D+ T RS Y YVNF + DA RA++
Sbjct: 42 ASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALD 101
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T + + RI WS RDP R+SGV N+FVKNL E++DN L + F FGNI+SCKV
Sbjct: 102 TMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKV 161
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT + G+SKG+G+V +E SAN AI +NG + K+++VG F+++ +R + A +T
Sbjct: 162 ATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHVGHFVRRDNR---AGQADWT 218
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIAS--LLIARDEN-------------GTSRGFGFV 236
NL++K L S + L E+F K G + S + +A E G SRGFGFV
Sbjct: 219 NLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEGKSRGFGFV 278
Query: 237 NFDNPDDARRALEAMNGSVI----GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYK 292
NF+ + A +A+EA+N + + G+ LY ARAQKK+ER + L+ + ++ + ER+ K++
Sbjct: 279 NFEEHESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARELQSKHDQVKMERMNKFQ 338
Query: 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN--KGFGFVCFSSPEEASKA 350
G NVYVKN+D+ VT++ ++ F+ GTITSA+VM D N KGFGFVCFS+PEEA+KA
Sbjct: 339 GVNVYVKNLDEGVTEDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEATKA 398
Query: 351 VNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP 410
+ +G ML KP+YVA+AQR+E R+ L+ Q+AQ G+ + P G +Y
Sbjct: 399 ITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQRTGGMPPRGMPMAP-GAQGMY---- 453
Query: 411 PGIVSQVPPRPGLMYQP 427
G+ + +PG+ QP
Sbjct: 454 -GMPYWMGAQPGMPQQP 469
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 288 ILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEE 346
I Y +++YV ++ DV + L FSQ G + S +V RD G+ +V F + +
Sbjct: 36 IAPYHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVAD 95
Query: 347 ASKAVNTFHGYMLHRKPLYVAIAQR 371
A +A++T + + + + +QR
Sbjct: 96 AERALDTMNFTTIKDQACRIMWSQR 120
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 212/508 (41%), Positives = 303/508 (59%), Gaps = 42/508 (8%)
Query: 129 CKVAT-SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPS 185
C+VA ++ S+G GFV FET+E+AN AI +NG + D++++VG F + +R L +
Sbjct: 111 CRVAVVCDENGSRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAELGA 170
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A ++TN+++KN + DV ++ L E FS+FGK S+ + DENG SRGFGFVNF+ ++A+
Sbjct: 171 RALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEAQ 230
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+ +MNG +G +VLY RAQK+ ER+ L+ +FE+ ++ER+ +Y+G N+YVKN+DD +
Sbjct: 231 KAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDDVI 290
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE+L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLY
Sbjct: 291 DDEKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 349
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY 425
VA+AQRKE+R+A L QY Q ++ + + V P P+ Y+ + Q P R Y
Sbjct: 350 VALAQRKEERKAILTNQYMQRISVLRNINGPVFPQ--PTNYFLP---AIPQSPTRASF-Y 403
Query: 426 QP---LGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRG--RMNGNMLPQVGAHYMQ 480
P +R R + P + AF V LP P+ + N R +P+ G H MQ
Sbjct: 404 SPSTMAPIRPAPRWTSYSPRSLCAFVVF-LPATPRRSTSNISTVRQASTQVPRAGPH-MQ 461
Query: 481 Q----SSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR----- 531
+ +Q+ + S Q Q KY S N+ VM R
Sbjct: 462 RVVNIGTQTMGTGCPGSPGQAIPQYKY---------------SSAMPNAHQVMERAVHIQ 506
Query: 532 -KPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
+ + MLA+ P++QKQ+LG+RLYPL+ L KITGMLLE+DNSELLL+LESP
Sbjct: 507 GQEPLTASMLASAPPQEQKQMLGDRLYPLIYGVHAQLAGKITGMLLEIDNSELLLMLESP 566
Query: 591 ESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
ESL K+EEAV L+ E + +H
Sbjct: 567 ESLHSKIEEAVAALQAQEVMELPKTYVH 594
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 148/265 (55%), Gaps = 21/265 (7%)
Query: 37 SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI----SWSCRDP 92
+L V V D R +G+V+F + A +AI N L+ + + + S R+
Sbjct: 109 TLCRVAVVCDENGSRG--FGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREA 166
Query: 93 D--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETE 150
+ AR N++VKN E +D+ L+E+F FG +S KV E+G S+G GFV FE
Sbjct: 167 ELGARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKH 226
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNL 198
E A A+ ++NG +G + +YVGR K+++R + +Y NL++KNL
Sbjct: 227 EEAQKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKNL 286
Query: 199 DSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGS 258
D + +E L ++FS +G I S + E G S+GFGFV F +P++A +A+ MNG ++ +
Sbjct: 287 DDVIDDEKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 345
Query: 259 KVLYAARAQKKAEREQILRHQFEEK 283
K LY A AQ+K ER+ IL +Q+ ++
Sbjct: 346 KPLYVALAQRKEERKAILTNQYMQR 370
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 25/204 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++YV + DV D L + FSEF SV+V D G S +G+VNF +A +A+
Sbjct: 177 NIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDE-NGHSRGFGFVNFEKHEEAQKAVNS 235
Query: 73 KNHTQLHGKMLRISWSCRDPDA-----------------RKSGVANLFVKNLIESIDNVR 115
N L G++L + + + + R GV NL+VKNL + ID+ +
Sbjct: 236 MNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGV-NLYVKNLDDVIDDEK 294
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F +G I S KV T E G SKG GFV F + E A A+ +NG V K +YV
Sbjct: 295 LRKEFSPYGVITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 353
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLD 199
+K +R A TN +M+ +
Sbjct: 354 QRKEER-----KAILTNQYMQRIS 372
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 186/421 (44%), Positives = 261/421 (61%), Gaps = 46/421 (10%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D
Sbjct: 55 PHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSD 114
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A++ N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 115 GEKALDELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 174
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR
Sbjct: 175 ILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 234
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPD 242
A +TN+++KN+ DVT++ F KFG + S +ARD E G SRGFGFVNF + +
Sbjct: 235 EEMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
DA +A+E +N + LY RAQKK ERE+ LR +E R+E+ KY+G N+Y+KN+D
Sbjct: 295 DASKAVEELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLD 354
Query: 303 DDVTDEELKAHFSQCGTITSAKVMR------------------------DEK-------- 330
D+V D++L+ FS+ G ITSAKVMR DE+
Sbjct: 355 DEVDDDKLRQLFSEFGPITSAKVMRETLAEGADEPEAKDAADAKENVKEDEEAAKTEGDE 414
Query: 331 -----------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
G +KGFGFVCF +P++A+KAV + M++ KPLYVA+AQRK+ R+ L
Sbjct: 415 GDAKADKKPKLGKSKGFGFVCFGNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKNQL 474
Query: 380 Q 380
+
Sbjct: 475 E 475
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 163/291 (56%), Gaps = 26/291 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F G++ S C+ A + +S G+ +V + T A
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNTTSDGEKA 118
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
++ LN T + + I S R PA + T N+F+KNLD + + L + F+
Sbjct: 119 LDELNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 171
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE+G S+G+GFV+++ + A +A++ +NG ++ K +Y K +R+
Sbjct: 172 FGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ 231
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGI 332
+FEE +K +N+YVKNI DVTD++ +A F + G +TS+ + RD E G
Sbjct: 232 ----SKFEE------MKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGK 281
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
++GFGFV F+S E+ASKAV + H + LYV AQ+K +R+ L+ Y
Sbjct: 282 SRGFGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQKKHEREEELRRSY 332
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 161/342 (47%), Gaps = 63/342 (18%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++++ +L + + L D F+ F ++ S +V +D G S YG+V++ + A +
Sbjct: 146 TGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQ 204
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDAR------KSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + D + K+ N++VKN+ + + + +F+
Sbjct: 205 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIQLDVTDDDFRALFEK 264
Query: 123 FGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FG++ S +A E GKS+G GFV F + E A+ A+E LN + +YVGR KK +R
Sbjct: 265 FGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQKKHER 324
Query: 182 ----------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD---- 225
A+KY NL++KNLD +V ++ L + FS+FG I S + R+
Sbjct: 325 EEELRRSYEAARQEKASKYQGVNLYIKNLDDEVDDDKLRQLFSEFGPITSAKVMRETLAE 384
Query: 226 --------------EN-------------------------GTSRGFGFVNFDNPDDARR 246
EN G S+GFGFV F NPDDA +
Sbjct: 385 GADEPEAKDAADAKENVKEDEEAAKTEGDEGDAKADKKPKLGKSKGFGFVCFGNPDDATK 444
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
A+ MN ++ K LY A AQ+K R+ L + + + R+
Sbjct: 445 AVAEMNQRMVNGKPLYVALAQRKDVRKNQLEASIQARNQLRM 486
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 46/60 (76%)
Query: 544 SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
+P QQKQILGE ++P ++ P+L KITGMLLEM+N+EL+ L+E+ SL KV+EA+ V
Sbjct: 686 NPGQQKQILGEVIFPKIQAIHPELAGKITGMLLEMENAELVALIENEGSLRAKVDEALAV 745
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 177/397 (44%), Positives = 254/397 (63%), Gaps = 29/397 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDLH DVT+ LF+ F+ + S+RVC+D+ T RS Y YVN+ DA R+++
Sbjct: 85 SLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDT 144
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+T + G+ RI W RDP RKSG N+FVKNL ++IDN L + F FGNI+SCKVA
Sbjct: 145 LNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVA 204
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
E+G SKG+GFV +E EESA +AI+ +NG +G K +YVG FI++++R + KYTN
Sbjct: 205 VDENGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAERDNLA-ETKYTN 263
Query: 193 LFMKNLDSDVTEE-HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
+++KN+ S +E L E F+K+G I SL++ +D G R F F NF + D A+ A+EA+
Sbjct: 264 VYIKNMPSAWEDEARLRETFAKYGSITSLVVRKDPKG--RLFAFCNFADHDSAKAAVEAL 321
Query: 252 NGSVI-------------------------GSKVLYAARAQKKAEREQILRHQFEEKRKE 286
NG + G ++L+ Q KA R +LR +FE+ ++
Sbjct: 322 NGKRVTDAGAIKEGEDSGAEEKDEEGQKREGEQILFVGPHQSKAHRSAMLRAKFEQMNQD 381
Query: 287 RILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEE 346
R +++G N+Y+KN+DD + DE+L+ F G+ITSAKVMRDE+G+++ FGFVCF SPEE
Sbjct: 382 RNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEE 441
Query: 347 ASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
A+KAV H ++ KPLYV +A+R+E R LQ ++
Sbjct: 442 ATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRF 478
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 51/61 (83%)
Query: 545 PEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
P QKQ+LGE+L+PL+ +++P+L KITGM+LEMDN+ELL+LLES L KV+EA++VL
Sbjct: 700 PSMQKQMLGEKLFPLIARYQPELAGKITGMMLEMDNAELLILLESEAQLKAKVDEALRVL 759
Query: 605 K 605
+
Sbjct: 760 Q 760
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 206/491 (41%), Positives = 276/491 (56%), Gaps = 76/491 (15%)
Query: 6 PTATTPA--------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGY 57
PT TT A SLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y Y
Sbjct: 34 PTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAY 93
Query: 58 VNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ 117
VN+ S D +A+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L
Sbjct: 94 VNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALH 153
Query: 118 EMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIK 177
+ F FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + +K+++VG I
Sbjct: 154 DTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIP 213
Query: 178 KSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF 235
K +R+ A +TN+++KN+D DVT+E E F K G I S IARD+ G SRGFGF
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGF 273
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN 295
VN+ + A A++ +N + LY RAQKK ERE+ LR Q+E R E+ KY+G N
Sbjct: 274 VNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVN 333
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKV------------------------------ 325
+Y+KN++DDV DE+L+ F+ GTITSAKV
Sbjct: 334 LYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEA 393
Query: 326 --------------------MRDEKGI---NKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
++ EK I +KGFGFVCFS+P+EA+KAV + M+ K
Sbjct: 394 KEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGK 453
Query: 363 PLYVAIAQRKEDR--------QAHLQLQYAQHMAGIEGSSAN--VIPSGYPSLYYTTPPG 412
PLYVA+AQRK+ R QA QL+ Q G + P P +Y PPG
Sbjct: 454 PLYVALAQRKDVRKNQLEATIQARNQLRMQQQQQQQFGGIPQMFIAPGQQPMMY---PPG 510
Query: 413 IVSQVPPRPGL 423
Q+P G+
Sbjct: 511 ARGQMPFPAGM 521
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
+L+A +P QQKQ+LGE LYP + + +P+L KITGMLLEMDNSEL+ L +L KV+
Sbjct: 654 VLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKVD 713
Query: 599 EAVQV 603
EA+ V
Sbjct: 714 EAMSV 718
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 212/511 (41%), Positives = 284/511 (55%), Gaps = 82/511 (16%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P+ T P ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 47 PSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 106
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 107 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 166
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 167 GNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 226
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KNLD++V+ E E F K+G+I S I+RD E G SRGFGF F
Sbjct: 227 KFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLK 286
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+ A A+E +N + LY RAQKK ERE+ LR Q E R E+ KY+G N+YVKN
Sbjct: 287 HESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKN 346
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD---------EK--------------------- 330
+ DD+ DE+L+ F G ITSA+VMRD EK
Sbjct: 347 LTDDIDDEKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEE 406
Query: 331 ----------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
G +KGFGFVCFS+P+EASKAV + M++ KPLYVA+
Sbjct: 407 DSADKSDKVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVAL 466
Query: 369 AQRKEDRQAHLQLQY-------AQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP-- 419
AQRK+ R++ L+ Q +A G S P P++YY PPG +P
Sbjct: 467 AQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQ---PFMQPAVYY--PPGQQGFIPANA 521
Query: 420 ----------RPGLMYQPL-GLRTGWRANGF 439
+PG++ + G R G A GF
Sbjct: 522 AQRGGMAFGQQPGMVIPGIPGGRPGQFAAGF 552
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 268/418 (64%), Gaps = 15/418 (3%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TA ASLYVG+L P V++ L+D FS ++S+RVC+D+ T S Y YVNF + HD+
Sbjct: 46 TAVDSASLYVGELDPSVSEALLYDIFSPIGPVSSIRVCRDAVTKTSLGYAYVNF-NDHDS 104
Query: 67 IR-AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+ AIE N+T + GK RI WS RDP RK+G N+F+KNL IDN L + F FGN
Sbjct: 105 GKVAIEKLNYTPIKGKPCRIMWSQRDPSMRKNGSGNIFIKNLHADIDNKALHDTFSVFGN 164
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCK+AT E GKSKG GFV FE + +A+ AI+ +NG + +YV + + DR
Sbjct: 165 ILSCKIATDETGKSKGFGFVHFEEDTAASEAIDAINGMMLNGLEVYVAAHVSRKDRESKF 224
Query: 186 PAAK--YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
AAK +TN+++KN+D + TEE E F KFG I S+ + +D G RGFGFVN++N +
Sbjct: 225 EAAKANFTNVYVKNVDLEATEEEFEELFKKFGPITSISMEKDSEGKFRGFGFVNYENHES 284
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A++ +N S+ LY RAQKK ER Q L+ Q+EE + E++ KY+G N++VKN+DD
Sbjct: 285 AAKAVDELNDLEFKSQKLYVGRAQKKYERLQELKKQYEEAKLEKMAKYQGVNLFVKNLDD 344
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ DE LK F GTITS KVMR+E G +KGFGFVCFSSPEEA++A+ + ++ KP
Sbjct: 345 TIDDELLKKEFESFGTITSVKVMRNETGKSKGFGFVCFSSPEEATRAITEKNQQIVAGKP 404
Query: 364 LYVAIAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGY--PSLYYTTPP 411
LYVA+AQRK+ R++ L Q++Y Q A ++A IP + P Y PP
Sbjct: 405 LYVALAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAG-IPGQFMQPMFYGVMPP 461
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 196/443 (44%), Positives = 265/443 (59%), Gaps = 50/443 (11%)
Query: 6 PTAT--TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PT + T ASLYVGDLHPDV + LF+ FS + S+RVC+D+ T S Y YVNF P
Sbjct: 24 PTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 64 HD----------------AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL 107
D A RA++ N LHGK +RI WS RDP R+SG N+F+KNL
Sbjct: 84 ADGKSFFQFMSFLTFLITAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNL 143
Query: 108 IESIDNVRLQEMFQNFGNIISCKV-----------ATSEDGKSKGHGFVQFETEESANAA 156
+ IDN + + F FGNI+SCKV A ++G SKG+GFV FETEE+A A
Sbjct: 144 DKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVHFETEEAAQNA 203
Query: 157 IENLNGTTVGDKRIYVGRFIKKS--DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKF 214
I+ +NG + K+++VG+F ++ +R L A K+TN+++KN +E L + F+K+
Sbjct: 204 IQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKFTNVYVKNFGDHYNKETLEKLFAKY 263
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVI-GSKV-LYAARAQKKAER 272
G I S + + G S+GFGFV F P++A A++A+N S + GS + L+ RAQKK+ER
Sbjct: 264 GAITSCDVMTSD-GKSKGFGFVAFAQPEEAEAAVQALNDSAVDGSDLKLHVCRAQKKSER 322
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV------- 325
L+ + E+ + ER+ KY+G N+YVKN+D+ V DE LK F G ITSAKV
Sbjct: 323 HAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVGLVPLEF 382
Query: 326 -------MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
M DE G +KGFGFVCF PEEA+ AV + M+ KPLYVA+AQRKEDR+A
Sbjct: 383 FISLFQVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQ 442
Query: 379 LQLQYAQHMAGIEGSSANVIPSG 401
L QY Q +A + S +P G
Sbjct: 443 LASQYMQRLASMRMHSN--VPGG 463
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 195/462 (42%), Positives = 271/462 (58%), Gaps = 27/462 (5%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T+ ASLYVG+L P V++ L+D FS S++S+RVC+D+ T S Y YVNF +
Sbjct: 37 TSTASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQ 96
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
AIE N+T + G+ RI WS RDP RK G N+F+KNL IDN L + F FGNI+S
Sbjct: 97 AIEKLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILS 156
Query: 129 CKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPS 185
CK+AT E G SKG GFV FE++E+A AI+ +NG + + +YV + + DR L
Sbjct: 157 CKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLEE 216
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A +TN+++KN+ + E+ E F K + S+ + +D G RGFGFVN++ A
Sbjct: 217 AKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAA 276
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+E +NG + L+ RAQKK ER+Q LR Q+E+ + E++ KY+G N+++KN+DD +
Sbjct: 277 KAVEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDSI 336
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE L+ FS GTITS KVM E G +KGFGFVCFS+PEEA+KA+ + ++ KPLY
Sbjct: 337 DDERLREEFSPFGTITSVKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 396
Query: 366 VAIAQRKEDRQAHL--------QLQYAQ----HMAGIEGSSANVIPSGYPSLYYTTPPGI 413
VAIAQRK+ R++ L Q++Y Q A G +P P Y PP
Sbjct: 397 VAIAQRKDVRRSQLAQQIQARNQMRYQQVTAAAAAAAAGMRGQFMP---PMFYGVMPPRG 453
Query: 414 VSQVPPRPGLMYQPLGLRTGWRANGFVPPTR----PAFQVSP 451
V P P Q L G NG +PP + P + V P
Sbjct: 454 VPFNGPNP----QQLAAMGGMPKNG-MPPQQFRNGPMYGVPP 490
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 546 EQQKQILGERLYPLVEKHKPDLVA--KITGMLLEMDNSELLLLLESPESLAVKVEEA 600
++Q+Q+LGE+LY V D A KITGM+L++ + E++ LLES E +EA
Sbjct: 512 QKQRQLLGEQLYKKVFARTSDEEAAGKITGMILDLPSQEVVPLLESDELFEQHFKEA 568
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 208/492 (42%), Positives = 293/492 (59%), Gaps = 61/492 (12%)
Query: 2 AVVPPTATTP---ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYV 58
A P A P ASLYVG+L P VT+ LF+ FS+ ++AS+RVC+D+ T RS Y YV
Sbjct: 46 APTPTAAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYV 105
Query: 59 NFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQE 118
N+ S D +A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 106 NYNSTPDGEKALEELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHD 165
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178
F FGNI+SCKVA E G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K
Sbjct: 166 TFAAFGNILSCKVAQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPK 225
Query: 179 SDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
DR A +TN+++KN+ DVT+ E F K+G + S +ARD+ G SRGFGFV
Sbjct: 226 KDRQSKFEEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFV 285
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
NF + A +A++ +NG+ + LY RAQKK ERE+ LR +E R E+ KY+G N+
Sbjct: 286 NFTTHEAAYKAVDELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNL 345
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRD------------EK-------------- 330
Y+KN+DDDV D++L+ FS+ G ITSAKVMRD EK
Sbjct: 346 YIKNLDDDVDDDKLRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEA 405
Query: 331 ------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
G +KGFGFVCFS+P++A+KAV + M++ KPLYVA+AQRK
Sbjct: 406 ESAENAEKKAEKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRK 465
Query: 373 EDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYT--TPPGIVSQ----VP-PRP 421
+ R++ L+ +Q + + ++A +P + P ++Y PG + Q +P P+P
Sbjct: 466 DVRKSQLEASIQARNQLRMQQAAAAAGMPQQFMQPPVFYAPGQQPGFIPQGGRGMPFPQP 525
Query: 422 GLMYQPLGLRTG 433
G M P G R G
Sbjct: 526 G-MPLPQGGRPG 536
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 49/71 (69%)
Query: 533 PDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPES 592
P ML LAA P QQKQILGE ++P ++ +L KITGMLLEMDN+EL+ L+E +
Sbjct: 655 PSMLQSQLAAAQPAQQKQILGELIFPKIQAINSELAGKITGMLLEMDNTELVNLIEDEAA 714
Query: 593 LAVKVEEAVQV 603
L KV+EA+ V
Sbjct: 715 LKAKVDEALAV 725
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 241/340 (70%), Gaps = 6/340 (1%)
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
+SP A RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F
Sbjct: 68 ISP--AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 125
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
FGNI+SCKV E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +
Sbjct: 126 SAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKE 184
Query: 181 RV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
R L + A ++TN+++KN D+ +E L E FSK+GK S+ + D G S+GFGFV+F
Sbjct: 185 REAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSF 244
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
+ +DA +A+E MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+
Sbjct: 245 EKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYI 304
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM 358
KN+DD + DE+L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G +
Sbjct: 305 KNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 363
Query: 359 LHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI 398
+ KPLYVA+AQRKE+R+AHL QY Q +AG+ AN I
Sbjct: 364 VGSKPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTI 403
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 25/203 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D L + FS++ SV+V D TG+S +G+V+F DA +A+E
Sbjct: 198 NVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEE 256
Query: 73 KNHTQLHGKMLRISWSCRDPD-----------------ARKSGVANLFVKNLIESIDNVR 115
N ++GKM+ + + + + +R GV NL++KNL ++ID+ +
Sbjct: 257 MNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 315
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L++ F FG+I S KV EDG+SKG GFV F + E A A+ +NG VG K +YV
Sbjct: 316 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 374
Query: 176 IKKSDRVLPSPAAKYTNLFMKNL 198
+K +R A TN +M+ +
Sbjct: 375 QRKEER-----KAHLTNQYMQRI 392
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LESPESL KVE
Sbjct: 551 MLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVE 610
Query: 599 EAVQVLKLSEAK 610
EAV VL+ +AK
Sbjct: 611 EAVAVLQAHQAK 622
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 254/428 (59%), Gaps = 59/428 (13%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E
Sbjct: 45 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 104
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 105 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKV 164
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR A
Sbjct: 165 AQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 224
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+D ++T++ F FG+I S ++ D++G SRGFGFVN+ N + A A+
Sbjct: 225 FTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVA 284
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MN + ++ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+ DD+ DE+
Sbjct: 285 EMNEKEVKTQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEK 344
Query: 310 LKAHFSQCGTITSAKVMRD----------------------------------------- 328
L+ F+ GTITSAKVMRD
Sbjct: 345 LRDLFTPYGTITSAKVMRDAAERSPTPEAEDKETKGSEEKEVKTEETAEVKTEETTEEKK 404
Query: 329 ----------EKGINKGFG------FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
+K K FG FVCFSSP+EASKAV + M++ KPLYVA+AQRK
Sbjct: 405 TEEQGEASEEKKAEKKAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQRK 464
Query: 373 EDRQAHLQ 380
+ R++ L+
Sbjct: 465 DVRRSQLE 472
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 157/290 (54%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F + G + S C+ A + +S G+ +V + A
Sbjct: 45 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERA 102
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E+LN T + K I S R PA + T N+F+KNLD+ + + L + F+
Sbjct: 103 LEDLNYTLIKGKPCR----IMWSQR---DPALRKTGQGNVFIKNLDNAIDNKALHDTFAA 155
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE S+G+GFV+++ + A A++ +NG ++ K ++ K +R+
Sbjct: 156 FGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ 215
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +N+Y+KNID ++TD+E + F G ITSA + D+ G +
Sbjct: 216 ----SKFEE------MKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKS 265
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV +++ E A AV + + + LYV AQ+K +R+ L+ QY
Sbjct: 266 RGFGFVNYANHESAEAAVAEMNEKEVKTQKLYVGRAQKKHEREEELRKQY 315
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 228 GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKER 287
G S+GFGFV F +PD+A +A+ MN ++ +K LY A AQ+K + R Q E + R
Sbjct: 423 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQRK----DVRRSQLEASIQAR 478
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 211/509 (41%), Positives = 280/509 (55%), Gaps = 83/509 (16%)
Query: 6 PTATTP-------ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYV 58
PT TT ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YV
Sbjct: 34 PTPTTAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYV 93
Query: 59 NFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQE 118
N+ S D +A+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 94 NYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHD 153
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178
F FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + +K+++VG I K
Sbjct: 154 TFAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPK 213
Query: 179 SDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
+R+ A +TN+++KN+D DVT++ + F K G I S IARD+ G SRGFGFV
Sbjct: 214 KERMSKFEEMKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFV 273
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
N+ + A A+E +N + + LY RAQKK ERE+ LR Q+E R E+ KY+G N+
Sbjct: 274 NYIKHEAASVAVETLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNL 333
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRD---------------------------- 328
Y+KN++DDV DE+L+ F+ GTITSAKVMRD
Sbjct: 334 YIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPADRSDSPSDKKEEEKDGKEESKETE 393
Query: 329 -------------------------EKGI-NKGFGF--VCFSSPEEASKAVNTFHGYMLH 360
EK I K GF VCFS+P+EA+KAV + ML
Sbjct: 394 GEAKEDSTDDKKEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMLE 453
Query: 361 RKPLYVAIAQRKEDR--------QAHLQLQYAQHMAGIEGSSAN--VIPSGYPSLYYTTP 410
KPLYVA+AQRK+ R QA QL+ Q G + P P ++ P
Sbjct: 454 GKPLYVALAQRKDVRKNQLEATIQARNQLRMQQQQQQQFGGIPQMFIAPGQQPMMF---P 510
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGF 439
PG Q+P G+ Q G R GF
Sbjct: 511 PGGRGQMPFPAGIPGQ-----QGGRGAGF 534
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 46/66 (69%)
Query: 538 GMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
G L++ P QQKQ+LGE LYP + + +P+ KITGMLLEMDNSEL+ L +L KV
Sbjct: 656 GALSSAPPGQQKQMLGEALYPKIHEMQPEFAGKITGMLLEMDNSELINLTSDEAALRAKV 715
Query: 598 EEAVQV 603
EEA+ V
Sbjct: 716 EEAMSV 721
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/369 (46%), Positives = 249/369 (67%), Gaps = 4/369 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA RA++
Sbjct: 109 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALD 168
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL SIDN L E F FG I+S KV
Sbjct: 169 TMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKV 228
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G S+G+ FV F+ + +A+ AIE +NG + D R++VGRF + DR L + A +
Sbjct: 229 MSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELRNKANE 287
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 288 FTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 347
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++L+ RAQKK+ER+ L+ FE+ ++ER + +G +Y+KN+DD + DE+
Sbjct: 348 EMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEK 407
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G+I+ K+MR+E G +KGFG +CFSSPEEA+KA+ +G +L KPLY+A+A
Sbjct: 408 LWREFSSFGSISRVKIMREE-GRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALA 466
Query: 370 QRKEDRQAH 378
Q+ +R A+
Sbjct: 467 QKPXERNAY 475
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 152/287 (52%), Gaps = 16/287 (5%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIE 158
A+L+V +L + L + F G ++S ++ +S G+ +V F A A++
Sbjct: 109 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALD 168
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
+N T+ K I + S R + N+F+KNLD + + L E FS FGKI
Sbjct: 169 TMNFDTIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKIL 224
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S + D+ G SRG+ FV+F N A RA+E MNG+++ L+ R + + +RE LR+
Sbjct: 225 SSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELRN 283
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
+ E +NVY+KN DD+ DE LK FS+ G S KVM D G +KGFGF
Sbjct: 284 KANE----------FTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGF 333
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
V F S E A KAV +G ++ + L+V AQ+K +RQA L+ + Q
Sbjct: 334 VSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQ 380
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 182/401 (45%), Positives = 249/401 (62%), Gaps = 11/401 (2%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL PDVT+ L++ F+ ++S+RVC+DS T +S Y YVN+ S DA A+E
Sbjct: 31 ASLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQDAEAALE 90
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + G RI WS +DP RKSG N+FVKNL SID + F +FG I+SCKV
Sbjct: 91 SLNYIDIKGHPTRIMWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTFSHFGPILSCKV 150
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A E+G SKG+GFV ++TEESA AIE +NG +G K++ V FIKK DR P+ +T
Sbjct: 151 AMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVSPFIKKQDRD-PASVDVFT 209
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL+++N EE L + K+G+I S++I E+G R F FVNF P+ A+ A+EA+
Sbjct: 210 NLYVRNFPVSWDEEALKQFLDKYGEITSMMI--KEDGKGRKFAFVNFAEPEMAKEAVEAL 267
Query: 252 NGSVI--GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
NG+ + GS+ L Q KA+R+ L+ Q+ I SN+Y+KN+DD TDE
Sbjct: 268 NGTKLEEGSEPLLVCPHQDKAKRQAFLKSQYISGLDGSIASKASSNLYIKNLDDSFTDES 327
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F Q G+ITS K+MRD G+++GFGFVCFS PEEA+KA+ H ++ KPLYV +A
Sbjct: 328 LQELFGQFGSITSCKIMRDASGVSRGFGFVCFSRPEEATKAIAGMHLKIVKGKPLYVGLA 387
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP 410
++KE R + LQ Q G S N P PS+ + P
Sbjct: 388 EKKEQRLSRLQ----QSSRSRNGDSMNQGP--IPSVLHGVP 422
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 46/58 (79%)
Query: 548 QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
QKQ++GERL+P+V + PDL KITGM+LE+DN+ELL LLE L K++EA++VLK
Sbjct: 603 QKQMIGERLFPIVARDNPDLAGKITGMMLEIDNAELLALLEDDARLKAKIDEAIRVLK 660
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 345 bits (885), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 178/379 (46%), Positives = 256/379 (67%), Gaps = 4/379 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + SVRVC+D+ + RS YGYVNF P DA A+
Sbjct: 19 ASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALN 78
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N LHGK +RI W RDP R+SGV N+FV +L SIDN L ++F FG I+SCKV
Sbjct: 79 TMNFDVLHGKPVRIMWCHRDPSLRRSGVGNVFVNHLDASIDNKELYDLFAGFGTILSCKV 138
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA--K 189
+ E+G KGHGFV FET E+A+ AI+ +NG+ V +++++VG+F + + R A +
Sbjct: 139 VSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEERRAKMEQ 197
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN T+E+L+E FS++G ++S+ I D++G S+GFGF+ F+ DA+RA+E
Sbjct: 198 FTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIE 257
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG G + +Y +RAQKK ERE+ L+ + EE ++ RI KY G +++VKN+ + DE
Sbjct: 258 EVNGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAESTDDEH 317
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F+ GT+TSAKV+ + G KGFGFV FSS EEA KAV HG ML +PLYV+ A
Sbjct: 318 LRKIFAPFGTVTSAKVIV-KGGRRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYVSYA 376
Query: 370 QRKEDRQAHLQLQYAQHMA 388
+ K++R+A+ Y + A
Sbjct: 377 RYKQERRAYFASYYGKKKA 395
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 23/209 (11%)
Query: 178 KSDRVLPS-PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGF 235
++D +P P +L++ +L +VTE L EKFS G I S+ + RD + S G+G+
Sbjct: 5 QADEEIPGMPGFPSASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGY 64
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN 295
VNF P+DA AL MN V+ K + + H+ R+ + N
Sbjct: 65 VNFHRPEDAGHALNTMNFDVLHGKPV-----------RIMWCHRDPSLRRSGV-----GN 108
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
V+V ++D + ++EL F+ GTI S KV+ DE G KG GFV F + E A KA+ +
Sbjct: 109 VFVNHLDASIDNKELYDLFAGFGTILSCKVVSDENG-PKGHGFVHFETREAADKAIKEMN 167
Query: 356 GYMLHRKPLYVA----IAQRKEDRQAHLQ 380
G ++ + ++V QR+E+R+A ++
Sbjct: 168 GSLVKERKVFVGQFKRPNQREEERRAKME 196
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 58/76 (76%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
++ L + SPE QK+ILGE L+PL++ +P L +KI GMLLEMDNSELLLLLESPES
Sbjct: 560 LITSTLVSASPEDQKKILGEWLFPLIQALQPTLASKIMGMLLEMDNSELLLLLESPESFC 619
Query: 595 VKVEEAVQVLKLSEAK 610
KV+EAV VL+ +A+
Sbjct: 620 SKVDEAVAVLEACQAQ 635
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 201/476 (42%), Positives = 287/476 (60%), Gaps = 64/476 (13%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS+ ++AS+RVC+D+ T RS Y YVN+ + D +A+E
Sbjct: 59 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKALE 118
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 119 ELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 178
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E+G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR A
Sbjct: 179 AQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 238
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+ DVTE+ E F KFG + S +ARD+ G SRGFGFVNF + A +A++
Sbjct: 239 FTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVD 298
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+DDDV D++
Sbjct: 299 DLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDK 358
Query: 310 LKAHFSQCGTITSAKVMR--------DEK------------------------------- 330
L+ FS+ G ITSAKVMR D+K
Sbjct: 359 LRQMFSEFGPITSAKVMRETPTEGDEDKKEETQDDKEKENKEEAKEEANEETKEGEEAKD 418
Query: 331 ------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
G +KGFGFVCFS+P++A+KAV + M++ KPLYVA+AQRK+ R++
Sbjct: 419 DKKTEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQ 478
Query: 379 LQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYT--TPPGIVSQ----VP-PRPGL 423
L+ +Q + + ++A +P Y P +Y+ PG + Q VP P+PG+
Sbjct: 479 LEASIQARNQLRMQQAAAAAGMPQQYMQPPVYFAPGQQPGFMPQGGRGVPFPQPGM 534
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 210/512 (41%), Positives = 281/512 (54%), Gaps = 83/512 (16%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PT P ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 106 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 165
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 166 GNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 225
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KNL+ +VT E E F K+G+I S ++RD E G SRGFGFVNF N
Sbjct: 226 KFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVN 285
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
D A A+E +N + LY RAQKK ERE+ LR Q E R E+ KY+G N+YVKN
Sbjct: 286 HDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKN 345
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD-------------------------------- 328
+ DD+ DE+L+ F G ITSA+VMRD
Sbjct: 346 LTDDIDDEKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVKEETKKEAG 405
Query: 329 --------------------EKGINKGFGF--VCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+K + K GF VCFS+P+EASKAV + M++ KPLYV
Sbjct: 406 GEDSAEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYV 465
Query: 367 AIAQRKEDRQAHLQLQY-------AQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP 419
A+AQRK+ R++ L+ Q +A G S P P++YY PPG +P
Sbjct: 466 ALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQ---PFMQPAVYY--PPGQQGFIPA 520
Query: 420 -----------RPGLMYQPL-GLRTGWRANGF 439
+PG++ + G R G GF
Sbjct: 521 NAQRGGMAFAQQPGMVLPGMPGGRPGQYPGGF 552
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 161 NGTTVGDKRIYVGRFI--KKSDRVLPSPAAKYT-NLFMKNLDSDVTEEHLVEKFSKFGKI 217
NGTT+ + G + + P+ A ++ +L++ LD VTE L E FS G++
Sbjct: 21 NGTTINTNVVTDGAADGNETPNSAAPTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQV 80
Query: 218 ASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQIL 276
AS+ + RD S G+ +VN++N D RALE +N ++I K +Q R+ L
Sbjct: 81 ASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQ----RDPAL 136
Query: 277 RHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF 336
R K NV++KN+D + ++ L F+ G I S KV +DE G +KG+
Sbjct: 137 R------------KTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 184
Query: 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
GFV + + E A+ A+ +G +L+ K ++V K+DRQ+ +
Sbjct: 185 GFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFE 228
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L AAP P QQKQ+LGE +YP ++ +P+L KITGMLLEMDN+ELL L++ +L
Sbjct: 699 LQAFSAAP-PAQQKQMLGEAIYPKIQVQQPELAGKITGMLLEMDNAELLSLVDDDAALRA 757
Query: 596 KVEEAVQV 603
KV+EA+ V
Sbjct: 758 KVDEAINV 765
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 210/512 (41%), Positives = 281/512 (54%), Gaps = 83/512 (16%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PT P ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 106 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 165
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 166 GNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 225
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KNL+ +VT E E F K+G+I S ++RD E G SRGFGFVNF N
Sbjct: 226 KFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVN 285
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
D A A+E +N + LY RAQKK ERE+ LR Q E R E+ KY+G N+YVKN
Sbjct: 286 HDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKN 345
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD-------------------------------- 328
+ DD+ DE+L+ F G ITSA+VMRD
Sbjct: 346 LTDDIDDEKLRDLFIGFGNITSARVMRDTISDAGSESEKEKEASKDNKENVKEETKKEAG 405
Query: 329 --------------------EKGINKGFGF--VCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+K + K GF VCFS+P+EASKAV + M++ KPLYV
Sbjct: 406 GEDSAEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYV 465
Query: 367 AIAQRKEDRQAHLQLQY-------AQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP 419
A+AQRK+ R++ L+ Q +A G S P P++YY PPG +P
Sbjct: 466 ALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQ---PFMQPAVYY--PPGQQGFIPA 520
Query: 420 -----------RPGLMYQPL-GLRTGWRANGF 439
+PG++ + G R G GF
Sbjct: 521 NAQRGGMAFAQQPGMVLPGMPGGRPGQYPGGF 552
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 183/410 (44%), Positives = 255/410 (62%), Gaps = 42/410 (10%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P SLYVGDLHPDVT+ L++ FS + S+RVC+D T RS+ Y YVNF P
Sbjct: 3 PSTPSYPMTSLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N ++GK +RI WS RDP RKSGV
Sbjct: 63 KDAERALDTMNFDVINGKSVRIMWSQRDPSLRKSGVV----------------------- 99
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
C E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 100 -----C----DENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRKEREA 149
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++TN+++KN D+ +EHL + F KFG S+ + DE G S+GFGFV+F+
Sbjct: 150 ELGARAKEFTNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFVSFERG 209
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ +NG + K +Y RAQKK ER+ L+ +FE+ ++++I +Y+G N+YVK +
Sbjct: 210 EDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYL 269
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 270 DDYIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGKIVAT 328
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPP 411
KPLYVA+AQRKE+RQAHL ++ A S +P+ Y PP
Sbjct: 329 KPLYVALAQRKEERQAHLTNEHMHRTA-----SVRAVPNPASKPYQPAPP 373
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 65/80 (81%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
ML + +P+QQKQ+LGERL+PL++ +P L KITGMLLEMDNSELL +LESPESL KV+
Sbjct: 517 MLVSAAPQQQKQMLGERLFPLIQARRPTLAGKITGMLLEMDNSELLHMLESPESLRSKVD 576
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV VL+ +AK + Q+A++
Sbjct: 577 EAVAVLQAHQAKEAAQKAVN 596
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 194/423 (45%), Positives = 264/423 (62%), Gaps = 11/423 (2%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL P V++ L+D FS S+ S+RVC+D+ T S Y YVNF AIE
Sbjct: 41 SLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKVAIER 100
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+T + G++ RI WS RDP RK G N+F+KNL IDN L + F FGNI+S K+A
Sbjct: 101 LNYTPIKGRLCRIMWSQRDPALRKKGNGNIFIKNLNADIDNKALYDTFSVFGNILSSKIA 160
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAKY 190
T E+G SKG GFV FE E +A AI+ LNG + + IYV + K+ D L A +
Sbjct: 161 TDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEKTRANF 220
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN+++KN+ D TEE E F K GK +S+++ + E+G +GFGFVN++N +DA +A+E
Sbjct: 221 TNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKLKGFGFVNYENHEDALKAVEE 280
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N + + LY RAQKK ER Q L+ Q+E R E++ KY+G N+++KN+DD + DE+L
Sbjct: 281 LNNTEFKGQELYVGRAQKKYERMQALKQQYEATRLEKMAKYQGVNLFIKNLDDSIDDEKL 340
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
K F+ GTITS KVMR E G +KGFGFVCFSSPEEA+KA+ + ++ KPLYVAIAQ
Sbjct: 341 KEEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQ 400
Query: 371 RKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVPPRP 421
RKE R++ L Q++Y Q A ++A + P ++Y PP V P P
Sbjct: 401 RKEVRRSQLAQQIQARSQMRYQQATAAAAAAAAGIPGQFMPPMFYGVMPPRGVPFNGPNP 460
Query: 422 GLM 424
M
Sbjct: 461 QQM 463
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 103/191 (53%), Gaps = 17/191 (8%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD V+E L + FS G + S+ + RD TS G+ +VNF + + + A+E
Sbjct: 40 TSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKVAIE 99
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N + I ++ +Q R+ LR K N+++KN++ D+ ++
Sbjct: 100 RLNYTPIKGRLCRIMWSQ----RDPALR------------KKGNGNIFIKNLNADIDNKA 143
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S+K+ DE G +KGFGFV F A +A++ +G +L+ + +YVA
Sbjct: 144 LYDTFSVFGNILSSKIATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVAPH 203
Query: 370 QRKEDRQAHLQ 380
+++R + L+
Sbjct: 204 LSRKERDSQLE 214
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 203/479 (42%), Positives = 270/479 (56%), Gaps = 71/479 (14%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PT P ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 106 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 165
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 166 GNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 225
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KNL+ +VT E E F K+G+I S ++RD E G SRGFGFVNF N
Sbjct: 226 KFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVN 285
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
D A A+E +N + LY RAQKK ERE+ LR Q E R E+ KY+G N+YVKN
Sbjct: 286 HDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKN 345
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD-------------------------------- 328
+ DD+ DE+L+ F G ITSA+VMRD
Sbjct: 346 LTDDIDDEKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVREETKKEAG 405
Query: 329 --------------------EKGINKGFGF--VCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+K + K GF VCFS+P+EASKAV + M++ KPLYV
Sbjct: 406 GEDSAEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYV 465
Query: 367 AIAQRKEDRQAHLQLQY-------AQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVP 418
A+AQRK+ R++ L+ Q +A G S P P++YY PPG +P
Sbjct: 466 ALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQ---PFMQPAVYY--PPGQQGFIP 519
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 218/531 (41%), Positives = 291/531 (54%), Gaps = 73/531 (13%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFET 149
RDP +R+SG AN+F+KNL ++IDN L + F FG I+SCKVA + G+SKG GFVQ+E
Sbjct: 1 RDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEK 60
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
EESA +A+++LNG + DK +YVG F++K +R AK+ N+F+KNL T++ LV+
Sbjct: 61 EESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVK 120
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS +G I S ++ +G SR F FVNF++PDDA RA+E +NG I K Y RAQKK
Sbjct: 121 VFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKK 180
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
+ERE L+ +FE+ K+ KY+G N+Y+KN+DD +TD++L+ FS G ITS K+MRD+
Sbjct: 181 SEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQ 240
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAG 389
G++KG GFV FS+ EEAS+A+ +G M+ KPLYVA AQRKEDR+A LQ Q++Q
Sbjct: 241 NGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQM--- 297
Query: 390 IEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL--------------------- 428
+ PS P L PP P L Q
Sbjct: 298 ---RPVPMTPSMTPRL---------PMYPPMPTLGQQLFYGQAPPAMMPPQPGYGFQQQL 345
Query: 429 --GLRTGWRA---NGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
G+R G A N FVP +P Q P P R G G PQ M
Sbjct: 346 VPGMRPGGGAHMPNYFVPVVQPG-QQGP---RPGIRRNGPGSAQGQQTPQPFQQQM---- 397
Query: 484 QSAASSKDSSNQQKGGQSKYVPNGR-IRELNKGSGVSLGTF-----------NSGGVMAR 531
+G +Y P R + E+ + GV +G GV
Sbjct: 398 -----------VPRGCVYRYPPGPRHMPEVQQMPGVGVGGMVQPYDMGSFPVRDAGVSPA 446
Query: 532 KP-DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNS 581
P L LA +PEQQ+ ILGE LYPLVEK + AK+TGMLLEMD +
Sbjct: 447 PPIGTLTSALANATPEQQRTILGESLYPLVEKLEHQQAAKVTGMLLEMDQT 497
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 19/186 (10%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+++V +L T +L FS + ++ S V G+S C+ +VNF SP DA RA+E
Sbjct: 103 NVFVKNLSESTTKDDLVKVFSGYGTITSA-VVMIGMDGKSRCFDFVNFESPDDAARAVEE 161
Query: 73 KNHTQLHGKML-----------------RISWSCRDPDARKSGVANLFVKNLIESIDNVR 115
N +++ K R S +D + G NL++KNL + I + +
Sbjct: 162 LNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQG-QNLYLKNLDDGITDDQ 220
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L+E+F NFG I SCK+ ++G SKG GFV F T E A+ A+ +NG + K +YV
Sbjct: 221 LRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFA 280
Query: 176 IKKSDR 181
+K DR
Sbjct: 281 QRKEDR 286
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/362 (46%), Positives = 247/362 (68%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 70 TMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G S+G+ FV F+ + +A+ AIE +NG + D R++VGRF + DR L + A +
Sbjct: 130 MSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKANE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FSK+GK S+ + RD +G S+GFGFV+FD+ + A++A+E
Sbjct: 189 FTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++L+ RAQKKAER+ L+ FE+ ++ER + +G +Y+KN+D+ + DE+
Sbjct: 249 EMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEK 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPEEA+KA+ +G +L KPL +A+A
Sbjct: 309 LRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSPEEATKAMTEMNGRILGSKPLNIALA 367
Query: 370 QR 371
Q+
Sbjct: 368 QK 369
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 153/293 (52%), Gaps = 28/293 (9%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIE 158
A+L+V +L + L + F G ++S ++ +S G+ +V F A A++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEHLVEKFS 212
+N + K I R++ S Y N+F+KNLD + + L E FS
Sbjct: 70 TMNFDLIKGKSI----------RLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFS 119
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FGKI S + D+ G SRG+ FV+F N A RA+E MNG+++ L+ R + + +R
Sbjct: 120 AFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDR 178
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
E L+++ E +NVY+KN DD+ DE LK FS+ G S KVMRD G
Sbjct: 179 EAELQNKANE----------FTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGK 228
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+KGFGFV F S E A KAV +G ++ + L+V AQ+K +RQA L+ + Q
Sbjct: 229 SKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQ 281
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/371 (45%), Positives = 247/371 (66%), Gaps = 4/371 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 109 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 168
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 169 TMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 228
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G S+G+ FV F+ + +A+ AIE +NG + D R++VGRF + DR L + +
Sbjct: 229 MSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVNE 287
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FSK+GK S+ + D G S+GFGFV+FD+ + A++A+E
Sbjct: 288 FTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAKKAVE 347
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++L+ RAQKK+ER+ L+ FE+ ++ER + +G +Y+KN+DD + DE+
Sbjct: 348 EMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEK 407
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G+I+ K+MR+E G +KGFG +CFSSPEEA+KA+ +G +L KPLY+A+A
Sbjct: 408 LWREFSSFGSISRVKIMREE-GRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALA 466
Query: 370 QRKEDRQAHLQ 380
QR +R+ L
Sbjct: 467 QRPXERKNFLH 477
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 153/293 (52%), Gaps = 28/293 (9%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIE 158
A+L+V +L + L + F G ++S ++ +S G+ +V F A A++
Sbjct: 109 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 168
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEHLVEKFS 212
+N + K I R++ S Y N+F+KNLD + + L E FS
Sbjct: 169 TMNFDMIKGKPI----------RLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFS 218
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FGKI S + D+ G SRG+ FV+F N + A RA+E MNG+++ L+ R + + +R
Sbjct: 219 AFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDR 277
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
E L+++ E +NVYVKN DD+ DE LK FS+ G S KVM D G
Sbjct: 278 EAELQNKVNE----------FTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGK 327
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+KGFGFV F S E A KAV +G ++ + L+V AQ+K +RQA L+ + Q
Sbjct: 328 SKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQ 380
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 22/197 (11%)
Query: 188 AKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
AKY +L++ +L +DVTE+ L +KFS G + S+ I RD S G+ +VNF DA
Sbjct: 104 AKYRQASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADA 163
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG-SNVYVKNIDD 303
++AL+ MN +I K + +Q+ A L+ G NV++KN+D
Sbjct: 164 QKALDTMNFDMIKGKPIRLMWSQRDA-----------------YLRKSGIGNVFIKNLDK 206
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L HFS G I S+KVM D++G ++G+ FV F + A +A+ +G +L
Sbjct: 207 SIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCR 265
Query: 364 LYVAIAQRKEDRQAHLQ 380
L+V + ++DR+A LQ
Sbjct: 266 LFVGRFKNRKDREAELQ 282
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 170/357 (47%), Positives = 244/357 (68%), Gaps = 6/357 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL P+VT+ +L AF ++S+R+C+ TG+S CY YVN S A RA+
Sbjct: 17 ASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALG 76
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
+ NHT L GK +RI W RDP ARK+G ANLFVKNL SI + L+ +F +G I+SCKV
Sbjct: 77 LLNHTNLKGKPMRIMWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKV 136
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A E+G+SKG GFVQFE+++SA A L+ T +G K+++V +F+KK++R +P +T
Sbjct: 137 A-GENGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTAAAPCEVFT 195
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KNLD +TE+ L + FS G ++S+ I D G S+ FGFVNF +PDDA++A++ M
Sbjct: 196 NLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVM 255
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NGSVIGSK L+ +AQ+K+ER IL+ ++++ K + SN+YVKN++ D+ D++LK
Sbjct: 256 NGSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLK 315
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
FS G I S KV+ G +K FGFVCF+SPEEA+KA+ +G+ PL+ ++
Sbjct: 316 EVFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVALNGH-----PLFFSV 367
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 151/285 (52%), Gaps = 18/285 (6%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158
A+L+V +L + L+ F + G I S ++ GKS + +V + A+ A+
Sbjct: 17 ASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALG 76
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
LN T + K + I R + + NLF+KNLD ++ L FSK+G I
Sbjct: 77 LLNHTNLKGKPMR----IMWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTIL 132
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S +A ENG S+GFGFV F++ D A A A++ +++G K L+ + KK ER
Sbjct: 133 SCKVA-GENGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTAAAPC 191
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
+ +N+YVKN+D+ +T++ LK FS G ++S +M D +G +K FGF
Sbjct: 192 EV------------FTNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGF 239
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
V F SP++A KAV+ +G ++ K L+V AQRK +R L+ +Y
Sbjct: 240 VNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMILKQEY 284
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 285 KERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSS 343
K+++L+ +G+++YV ++D +VT+ +L+A F G I+S ++ R G + + +V S
Sbjct: 9 KQQVLQ-RGASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYS 67
Query: 344 PEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+AS+A+ + L KP+ + QR
Sbjct: 68 HAQASRALGLLNHTNLKGKPMRIMWCQR 95
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 168/362 (46%), Positives = 246/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL SIDN L E F FG I+S KV
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + D +++VGRF + DR L + A++
Sbjct: 130 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRNKASE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FSK+GK S+ + D +G S+GFGFV+FDN + A++A+E
Sbjct: 189 FTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE++++ERI K +G +Y+KN+DD + DE+
Sbjct: 249 EMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEK 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPEEA+KA+ +G +L KPL +A++
Sbjct: 309 LRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLNIALS 367
Query: 370 QR 371
Q+
Sbjct: 368 QK 369
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 151/289 (52%), Gaps = 16/289 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L + F G ++S ++ +S G+ +V F A A+
Sbjct: 9 MASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKAL 68
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I + + D L N+F+KNLD + + L E FS FGKI
Sbjct: 69 DTMNFDMIKGKSIRL--MWSQRDACLRKSGI--GNVFIKNLDRSIDNKTLYEHFSAFGKI 124
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + D+ G S+G+ FV+F N A RA+E MNG ++ ++ R + + +RE LR
Sbjct: 125 LSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELR 183
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
++ E +NVY+KN DD+ DE L+ FS+ G S KVM D G +KGFG
Sbjct: 184 NKASE----------FTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFG 233
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQH 386
FV F + E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 234 FVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQ 282
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 196/478 (41%), Positives = 283/478 (59%), Gaps = 60/478 (12%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ ++AS+RVC+D+ T RS Y YVN+ S D
Sbjct: 54 PHPQNSASLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTAD 113
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 114 GEKALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 173
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E+G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K DR
Sbjct: 174 ILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 233
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A +TN+++KN+ + TE+ + F ++G + S +ARD+ G SRGFGFVNF +
Sbjct: 234 EEMKANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHES 293
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A++ +NG + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+DD
Sbjct: 294 AAKAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDD 353
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEK--------------------------------- 330
DV D++L+ FS+ G ITSAKVMRD
Sbjct: 354 DVDDDKLRQMFSEFGPITSAKVMRDTPVENEDEKPAEEKKEEQEDKDKENKPEETKEGEE 413
Query: 331 --------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQ 376
G +KGFGFVCFS+P++A+KAV + M+ KPLYVA+AQRK+ R+
Sbjct: 414 GAEKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVSNKPLYVALAQRKDVRK 473
Query: 377 AHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYT--TPPGIVSQ----VP-PRPGL 423
+ L+ +Q + + ++A +P Y P +Y+ PG + Q +P P+PG+
Sbjct: 474 SQLEASIQARNQLRMQQAAAAAGMPQQYMQPPVYFAPGQQPGFIPQGGRGMPFPQPGM 531
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 551 ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
ILGE ++P ++ +L KITGMLLEMDNSEL+ L+E SL KV+EA+ V
Sbjct: 680 ILGELIFPKIQAINSELAGKITGMLLEMDNSELVNLIEDDSSLKAKVDEALAV 732
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 208/513 (40%), Positives = 300/513 (58%), Gaps = 36/513 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL D ++G LF+ F+ +AS+RVC+D+ T RS Y YVNF + DA RA++
Sbjct: 12 ASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALD 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + K RI WS RDP RKSGV N+FVKNL SID+ L + F FGNI+SCKV
Sbjct: 72 TMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSLFGNILSCKV 131
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT E G+S+G+G+V +E+E++A AI +N T+ DK +YVG F+++++R S + +T
Sbjct: 132 ATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTER---SGQSDWT 188
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KN +D EE L + F FG I S A +G++ FG+VNF+ D A A++A+
Sbjct: 189 NLYVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSA--FGWVNFEAHDAAVAAMDAL 246
Query: 252 N------GSVIGSKV-----LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
N G G+ L+ RAQKK ERE+ L+ +F+ + ERI KY+G N++VKN
Sbjct: 247 NGIAELPGQAGGAPTTLKAPLFVGRAQKKIERERELKAKFDAAKIERIKKYQGVNLFVKN 306
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
+DD + D++L+ +F++ GTITSA+VMR+ G ++GFGFVCFSSPEEA+KAV + ++
Sbjct: 307 LDDGLDDDQLRENFAEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLV 366
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQH--MAGIEGSSANVIPSGYPSLYYTTPPGIVSQV 417
KP++VA+AQRKE R+A L+ Q+AQ A + P+G P P G+
Sbjct: 367 LGKPIFVALAQRKEVRRAQLEAQHAQRRTTAPYGAHPGAMGPAGVPP---HAPQGLHPAH 423
Query: 418 PPRPGLMYQPLGLRTG---WRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNML--- 471
P P+ G G P P ++ +P N + RG G M
Sbjct: 424 LGAPYGTAMPIMYAAGAPNGHPMGMTPQGHPGVPIAGVPPNARGYVMARGSPRGPMTDPR 483
Query: 472 --------PQVGAHYMQQSSQSAASSKDSSNQQ 496
P+ G + M SS+ SN++
Sbjct: 484 AGFGHGGAPRQGGYPMHPGQMQQMSSQGGSNRR 516
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 206/502 (41%), Positives = 286/502 (56%), Gaps = 73/502 (14%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D
Sbjct: 56 PHPQASASLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTID 115
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 116 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGN 175
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E G SKG+GFV +ET+E+A+ AI+++NG + +K+++VG I K DR
Sbjct: 176 ILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKF 235
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPD 242
A +TN+++KN+ + T+E E F KFG + S +ARD ++ SRGFGFVNF N +
Sbjct: 236 EEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHE 295
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
A +A++ +NG + LY RAQKK ERE+ LR +E R E+ KY+G N+YVKN+D
Sbjct: 296 HAAKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLD 355
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRD---------------------------------- 328
DDV D++L+ F+ G+ITSAKVMRD
Sbjct: 356 DDVDDDKLRELFTPFGSITSAKVMRDTPAETAEAEEKEKKDSEKNKENIKEGETAEAENT 415
Query: 329 ------EK---GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
EK G +KGFGFVCF++PEEASKAV + M++ KPLYVA+AQRK+ R+ L
Sbjct: 416 EDKPKSEKRTVGKSKGFGFVCFNNPEEASKAVTDMNQRMVNNKPLYVALAQRKDVRKNQL 475
Query: 380 QLQYAQHMAGIEGSS-----ANVIPSGYPSLYYTTP--------PGIVSQV------PPR 420
+ A I+ + +G P + TP PG + Q PP+
Sbjct: 476 E-------ASIQARNQIRMQQAAAAAGMPQQFMQTPMFYPPGQQPGFIPQAGRGMAFPPQ 528
Query: 421 PGL-MYQPLGLRTGWRANGFVP 441
G+ + G R G GF P
Sbjct: 529 AGMPIPGAQGGRPGQFPAGFPP 550
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 53/78 (67%), Gaps = 7/78 (8%)
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLL 585
GG +A++ L+A P QQKQ+LGE L+P ++ +P+L KITGMLLEM+N EL+
Sbjct: 687 GGALAQQ-------LSAVPPAQQKQLLGEALFPKIQVLQPELAGKITGMLLEMENQELVN 739
Query: 586 LLESPESLAVKVEEAVQV 603
L+E +L KV+EA+ V
Sbjct: 740 LIEDDSALRSKVDEALTV 757
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 166/361 (45%), Positives = 244/361 (67%), Gaps = 4/361 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 70 TMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G S+G+ FV F+ + +A+ AIE +NG + D R++VGRF + DR L + A +
Sbjct: 130 MSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAELQNKANE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E FSK+GK S+ + D G S+GFGFV+F + + A++A+E
Sbjct: 189 FTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHEAAQKAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++L+ RAQKKAER+ L+ FE++++ER + +G +Y+KN+DD + DE+
Sbjct: 249 EMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQERFRRCQGVKLYIKNLDDTIDDEK 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPEEA++A+ +G +L KPL +A+A
Sbjct: 309 LRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATRAMTEMNGRILGSKPLNIALA 367
Query: 370 Q 370
Q
Sbjct: 368 Q 368
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 153/294 (52%), Gaps = 28/294 (9%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIE 158
A+L+V +L + L + F G ++S ++ +S G+ +V F A A++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEHLVEKFS 212
+N T+ K I R++ S Y N+F+KNLD + + L E FS
Sbjct: 70 TMNFDTIKGKSI----------RLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFS 119
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FGKI S + D+ G SRG+ FV+F N A RA+E MNG+++ L+ R + + +R
Sbjct: 120 AFGKILSSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDR 178
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
E L+++ E +N+Y+KN DD+ D+ L+ FS+ G S KVM D G
Sbjct: 179 EAELQNKANE----------FTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGK 228
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQH 386
+KGFGFV F S E A KAV +G ++ + L+V AQ+K +RQA L+ + Q
Sbjct: 229 SKGFGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQ 282
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 245/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 128 TMNFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 187
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 188 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 247 FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI +G +Y+KN+DD + DE+
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A+KA+ +G +L KPL +A+A
Sbjct: 367 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Query: 370 QR 371
QR
Sbjct: 426 QR 427
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 152/299 (50%), Gaps = 28/299 (9%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEH 206
A A++ +N + K I R++ S Y N+F+KNLD + +
Sbjct: 122 AQKALDTMNFDMIKGKSI----------RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 171
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E FS FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ ++ R
Sbjct: 172 LYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRF 230
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+ + +RE LR + E +N+Y+KN D+ DE LK FS+ G S KVM
Sbjct: 231 KNRKDREAELRSKASE----------FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVM 280
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
D G +KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 281 TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 260 VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT 319
+++ R K+ R Q H ++K KY+ +++YV ++ DVT++ L FS G
Sbjct: 36 LVFPHRDCSKSSRGQT--HSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGP 93
Query: 320 ITSAKVMRDEKGINK-GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+ S ++ RD+ G+ +V F +A KA++T + M+ K + + +QR
Sbjct: 94 VLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDMIKGKSIRLMWSQR 146
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 245/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 187
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 188 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 247 FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI +G +Y+KN+DD + DE+
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQGVKLYIKNLDDTIDDEK 366
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A+KA+ +G +L KPL +A+A
Sbjct: 367 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Query: 370 QR 371
QR
Sbjct: 426 QR 427
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 156/310 (50%), Gaps = 32/310 (10%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEH 206
A A++ +N + K I R++ S Y N+F+KNLD + +
Sbjct: 122 AQKALDTMNFDIIKGKSI----------RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 171
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E FS FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ ++ R
Sbjct: 172 LYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRF 230
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+ + +RE LR + E +N+Y+KN D+ DE LK FS+ G S KVM
Sbjct: 231 KNRKDREAELRSKASE----------FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVM 280
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ- 385
D G +KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 281 TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQL 340
Query: 386 ---HMAGIEG 392
+ G +G
Sbjct: 341 KRERICGCQG 350
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/386 (46%), Positives = 250/386 (64%), Gaps = 27/386 (6%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
A VP TA SLYVG+L V++ LF+ F+ +AS+RVC+D+ T RS Y YVN+L
Sbjct: 168 AAVPQTA----SLYVGELDHTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYL 223
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
+ D R RDP RK+G N+F+KNL E+IDN L + F
Sbjct: 224 NAADGER---------------------RDPALRKTGQGNIFIKNLDEAIDNKALHDTFA 262
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FGN++SCKVAT E GKS+G+G+V +ET ESA AAI+ +N + DK+++VG I + +R
Sbjct: 263 AFGNVLSCKVATDETGKSRGYGYVHYETAESAEAAIKAVNRMLLNDKQVFVGHHISRKER 322
Query: 182 V--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
+ A++TN+++KNLD+D+TE F +FG I S ++ D G SRGFGFVN++
Sbjct: 323 QSQIDEARAQFTNIYVKNLDTDITEAEFRVMFEEFGNITSAVLQTDNEGKSRGFGFVNYE 382
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
N ++A RA+ M+ I KVL+ RAQKK+ER+ L E ++ER KY G N+YVK
Sbjct: 383 NHEEAERAVNEMHEKEIKGKVLFVGRAQKKSERQSELARSHEAAKQERQNKYAGVNLYVK 442
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+DDDV D++L+A F GTITS KVMR+E+ I+KGFGFVCFS+P+EA+KAV + M+
Sbjct: 443 NLDDDVDDDKLRAEFEAFGTITSCKVMRNERDISKGFGFVCFSTPDEATKAVTEMNNKMI 502
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQ 385
KPLYV++AQR++ R+ L+ Q Q
Sbjct: 503 GTKPLYVSLAQRRDVRRQQLEGQIMQ 528
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 162/329 (49%), Positives = 227/329 (68%), Gaps = 2/329 (0%)
Query: 23 VTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKM 82
VT+ LF+ FS + S+RVC+D RS Y YVNF P DA RA++ N + G+
Sbjct: 4 VTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRP 63
Query: 83 LRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGH 142
+RI WS RDP RKSGV N+F+KNL +SIDN + + F FGNI+SCKVAT E+ SKG+
Sbjct: 64 IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGY 123
Query: 143 GFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAKYTNLFMKNLDS 200
GFV FETEE+AN AI+ +NG + ++++VG+F+ +S+R L A ++ N+++KN
Sbjct: 124 GFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGD 183
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
D+ +E L E F K+GKI S + DE G +GFGFV+F++P++A +A+ +N + KV
Sbjct: 184 DLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKV 243
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
LY RAQKK+ER L+ +FE+ + +RI +Y+G N+YVKN+DD + DE L+ F+ GTI
Sbjct: 244 LYVGRAQKKSERAAELKRRFEQLKMDRINRYQGVNLYVKNLDDSIDDERLRKEFTPFGTI 303
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASK 349
TSAKVM D G +KGFGFVCFS+PEEA+K
Sbjct: 304 TSAKVMTDSNGRSKGFGFVCFSAPEEATK 332
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 147/271 (54%), Gaps = 15/271 (5%)
Query: 116 LQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGR 174
L E F + G ++S +V + S G+ +V F+ A A++ +N V + I
Sbjct: 9 LFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRPIR--- 65
Query: 175 FIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
I S R + N+F+KNLD + + + + FS FG I S +A DE S+G+G
Sbjct: 66 -IMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYG 124
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS 294
FV+F+ + A A++ +NG ++ + ++ + ++ERE+ L + R +
Sbjct: 125 FVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQ-----KARRFM----- 174
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
NVY+KN DD+ DE+L+ F + G ITSAKVM DE G KGFGFV F PE A KAVN
Sbjct: 175 NVYIKNFGDDLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDL 234
Query: 355 HGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+ L+ K LYV AQ+K +R A L+ ++ Q
Sbjct: 235 NNKELNGKVLYVGRAQKKSERAAELKRRFEQ 265
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 19/158 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D+ D +L + F ++ + S +V D TG+ +G+V+F P +A +A+
Sbjct: 175 NVYIKNFGDDLDDEKLREMFEKYGKITSAKVMADE-TGKPKGFGFVSFEDPENAEKAVND 233
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N+ +L+GK+L + + + D R GV NL+VKNL +SID+ R
Sbjct: 234 LNNKELNGKVLYVGRAQKKSERAAELKRRFEQLKMDRINRYQGV-NLYVKNLDDSIDDER 292
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153
L++ F FG I S KV T +G+SKG GFV F E A
Sbjct: 293 LRKEFTPFGTITSAKVMTDSNGRSKGFGFVCFSAPEEA 330
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 245/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 130 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 189 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI +G +Y+KN+DD + DE+
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A+KA+ +G +L KPL +A+A
Sbjct: 309 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Query: 370 QR 371
QR
Sbjct: 368 QR 369
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 152/299 (50%), Gaps = 28/299 (9%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEH 206
A A++ +N + K I R++ S Y N+F+KNLD + +
Sbjct: 64 AQKALDTMNFDIIKGKSI----------RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 113
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E FS FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ ++ R
Sbjct: 114 LYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRF 172
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+ + +RE LR + E +NVY+KN D+ DE LK FS+ G S KVM
Sbjct: 173 KNRKDREAELRSKASE----------FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVM 222
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
D G +KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 223 TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 281
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 245/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 130 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 189 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI +G +Y+KN+DD + DE+
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A+KA+ +G +L KPL +A+A
Sbjct: 309 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Query: 370 QR 371
QR
Sbjct: 368 QR 369
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 152/299 (50%), Gaps = 28/299 (9%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEH 206
A A++ +N + K I R++ S Y N+F+KNLD + +
Sbjct: 64 AQKALDTMNFDIIKGKSI----------RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 113
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E FS FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ ++ R
Sbjct: 114 LYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRF 172
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+ + +RE LR + E +NVY+KN D+ DE LK FS+ G S KVM
Sbjct: 173 KNRKDREAELRSKASE----------FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVM 222
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
D G +KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 223 TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 281
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 245/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 67 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 126
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 127 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 186
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 187 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 245
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 246 FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 305
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI +G +Y+KN+DD + DE+
Sbjct: 306 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 365
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A+KA+ +G +L KPL +A+A
Sbjct: 366 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 424
Query: 370 QR 371
QR
Sbjct: 425 QR 426
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 152/299 (50%), Gaps = 28/299 (9%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 61 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 120
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEH 206
A A++ +N + K I R++ S Y N+F+KNLD + +
Sbjct: 121 AQKALDTMNFDIIKGKSI----------RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 170
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E FS FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ ++ R
Sbjct: 171 LYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRF 229
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+ + +RE LR + E +N+Y+KN D+ DE LK FS+ G S KVM
Sbjct: 230 KNRKDREAELRSKASE----------FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVM 279
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
D G +KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 280 TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 338
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GF 336
H ++K KY+ +++YV ++ DVT++ L FS G + S ++ RD+ G+
Sbjct: 51 HSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGY 110
Query: 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+V F +A KA++T + ++ K + + +QR
Sbjct: 111 AYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQR 145
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 171/396 (43%), Positives = 254/396 (64%), Gaps = 4/396 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 203 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALD 262
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 263 TMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGKILSSKV 322
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NGT + + R++V RF + DR L + A++
Sbjct: 323 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESELKNKASE 381
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ + L E FSK+G S+ + D +G S+GFGFV+F + + A+ A+E
Sbjct: 382 FTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHEAAKNAVE 441
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ R+ER + +G +Y+KN+DD + DE+
Sbjct: 442 EMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEK 501
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F+ G+I+ KVM++E G +KGFG +CFSS EEA KA+ +G +L KPL +A+A
Sbjct: 502 LRKEFASFGSISRVKVMQEE-GRSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIALA 560
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSL 405
QR E+R+ Q G+ A ++ S + +L
Sbjct: 561 QRNEERKTCFDNQXVGRGGGMTVIPAXIVLSKFQTL 596
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 111/198 (56%), Gaps = 22/198 (11%)
Query: 187 AAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDD 243
AAKY +L++ +L +DVTE+ L +KFS G + S+ I RD S G+ +VNF + D
Sbjct: 197 AAKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVAD 256
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG-SNVYVKNID 302
A++AL+ MN VI K + +Q+ A L+ G NV++KN+D
Sbjct: 257 AQKALDTMNFDVIKGKSIRLMWSQRDA-----------------YLRKSGIGNVFIKNLD 299
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ ++ L HFS G I S+KVM D++G +KG+ FV F + A +A+ +G +L
Sbjct: 300 KSIDNKTLYEHFSTFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTLLKNC 358
Query: 363 PLYVAIAQRKEDRQAHLQ 380
++V+ + ++DR++ L+
Sbjct: 359 RVFVSRFKSRKDRESELK 376
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 168/327 (51%), Positives = 221/327 (67%), Gaps = 4/327 (1%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P A+ P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 41 PNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 100
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 101 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 160
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 161 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 220
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
A +TN+++KN+D DVTEE E F KFG+I S ++RD+ G SRGFGFVNF
Sbjct: 221 KFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTH 280
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+ A+ A++ MN I ++ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+
Sbjct: 281 ESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 340
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRD 328
DDV DE+L+ F GTITSAKVMRD
Sbjct: 341 TDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 178/632 (28%), Positives = 270/632 (42%), Gaps = 106/632 (16%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++++ +L + + L D F+ F ++ S +V +D G S YG+V++ + A
Sbjct: 134 TGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANN 192
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDAR------KSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + D + K+ N+++KN+ + + +E+F+
Sbjct: 193 AIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEK 252
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FG I S ++ ++GKS+G GFV F T ESA AA++ +N + +++YVGR KK +R
Sbjct: 253 FGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHER- 311
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
EE L +++ + A L A G + + D D
Sbjct: 312 ---------------------EEELRKQY----EAARLEKASKYQGVNLYVKNLTDDVDD 346
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+ R L G++ +KV+ ER Q E++ KE K + +
Sbjct: 347 EKLRELFGPYGTITSAKVMR----DTNIERTQTPESDKEKENKEAT---KENEKESSEAE 399
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGI--NKGFGFVCFSSPEEASKAVNTFHGYMLH 360
EE A D+KG+ +KGFGFVCFSSP+EASKAV + M++
Sbjct: 400 KAEKTEEKPADSGDEKKEDKESKKADKKGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVN 459
Query: 361 RKPLYVAIAQRKEDRQAHLQLQ---------------------YAQHMAGIEGSSANVIP 399
KPLYVA+AQRK+ R++ L+ Y Q IP
Sbjct: 460 GKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIP 519
Query: 400 SGYPSLYYTTPPGIVSQVPP--RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPK 457
+ + PG+V P RPG P + G R G P FQ P+
Sbjct: 520 GQRGGIAFPPQPGMVMAGIPGGRPGQYPGPFPGQQGGRGMGPNQQLPPNFQGIPM----- 574
Query: 458 HNRQNRGRM-----NGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKY--------- 503
G M NG PQ A Q + A GQ
Sbjct: 575 ------GAMQGPVPNGMGYPQGMAQV--QFGRGAGGRGQVPGMPNMGQGMRGPGYGQGRG 626
Query: 504 ---VPNGRIRELNKGSGVSLGTFNSGGVMARKPD--MLNGM----LAAPSPEQQKQILGE 554
V G++R G G N+ A +P+ + G+ L+A P QQKQ+LGE
Sbjct: 627 GVPVQQGQMRPGQGGRGQ-----NAAQAPAGRPEEAVAGGLTAQALSAAPPPQQKQMLGE 681
Query: 555 RLYPLVEKHKPDLVAKITGMLLEMDNSELLLL 586
LYP ++ +P+L KITGMLLEM+N+ELL L
Sbjct: 682 ALYPKIQAQQPELAGKITGMLLEMENTELLSL 713
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 167/302 (55%), Gaps = 25/302 (8%)
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGF 144
S P+A + A+L+V L S+ L E+F + G + S C+ A + +S G+ +
Sbjct: 37 STTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAY 94
Query: 145 VQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSD 201
V + A+E+LN T + K I S R PA + T N+F+KNLDS
Sbjct: 95 VNYNNTADGERALEDLNYTLIKGKPCR----IMWSQR---DPALRKTGQGNVFIKNLDSA 147
Query: 202 VTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+ + L + F+ FG I S +A+DE G S+G+GFV+++ + A A++ +NG ++ K +
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 262 YAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTIT 321
+ K +R+ +FEE +K +NVY+KNID DVT+EE + F + G IT
Sbjct: 208 FVGHHISKKDRQ----SKFEE------MKANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 322 SAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQL 381
SA + RD++G ++GFGFV FS+ E A AV+ + + + LYV AQ+K +R+ L+
Sbjct: 258 SATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRK 317
Query: 382 QY 383
QY
Sbjct: 318 QY 319
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 168/331 (50%), Positives = 222/331 (67%), Gaps = 4/331 (1%)
Query: 2 AVVPPTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVN 59
+ P A+ P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN
Sbjct: 37 STTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVN 96
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
+ + D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 97 YNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 156
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K
Sbjct: 157 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 216
Query: 180 DRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVN 237
DR A +TN+++KN+D DVTEE E F KFG+I S ++RD+ G SRGFGFVN
Sbjct: 217 DRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVN 276
Query: 238 FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVY 297
F + A+ A++ MN I ++ LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y
Sbjct: 277 FSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLY 336
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRD 328
VKN+ DDV DE+L+ F GTITSAKVMRD
Sbjct: 337 VKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 187/644 (29%), Positives = 293/644 (45%), Gaps = 96/644 (14%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++++ +L + + L D F+ F ++ S +V +D G S YG+V++ + A
Sbjct: 134 TGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANN 192
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDAR------KSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + D + K+ N+++KN+ + + +E+F+
Sbjct: 193 AIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEK 252
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FG I S ++ ++GKS+G GFV F T ESA AA++ +N + +++YVGR KK +R
Sbjct: 253 FGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHER- 311
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
EE L +++ + A L A G + + D D
Sbjct: 312 ---------------------EEELRKQY----EAARLEKASKYQGVNLYVKNLTDDVDD 346
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+ R L G++ +KV+ ER Q E++ KE K + +
Sbjct: 347 EKLRELFGPYGTITSAKVMR----DTNIERTQTPESDKEKENKEAT---KENEKESSEAE 399
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGI--NKGFGFVCFSSPEEASKAVNTFHGYMLH 360
EE A D+KG+ +KGFGFVCFSSP+EASKAV + M++
Sbjct: 400 KAEKTEEKPADSGDEKKEDKESKKADKKGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVN 459
Query: 361 RKPLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY--------- 407
KPLYVA+AQRK+ R++ L+ +Q + + ++A +P Y P+++Y
Sbjct: 460 GKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIP 519
Query: 408 --------TTPPGIVSQVPP--RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL----- 452
PG+V P RPG P + G R G P FQ P+
Sbjct: 520 GQRGGIAFPPQPGMVMAGIPGGRPGQYPGPFPGQQGGRGMGPNQQLPPNFQGIPMGAMQG 579
Query: 453 PVN-----PKHNRQ--------NRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGG 499
PV P+ Q RG++ G +P +G M+ Q G
Sbjct: 580 PVPNGMGYPQGMAQVQFGRGAGGRGQVPG--MPNMG-QGMRGPGYGQGRGGVPVQQ---G 633
Query: 500 QSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPL 559
Q + GR + + +GG+ A+ L+A P QQKQ+LGE LYP
Sbjct: 634 QMRPGQGGRGQNAAQAPAGRPEEAVAGGLTAQ-------ALSAAPPPQQKQMLGEALYPK 686
Query: 560 VEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
++ +P+L KITGMLLEM+N+ELL LLE E+L KV+EA+ V
Sbjct: 687 IQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEALNV 730
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 167/302 (55%), Gaps = 25/302 (8%)
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGF 144
S P+A + A+L+V L S+ L E+F + G + S C+ A + +S G+ +
Sbjct: 37 STTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAY 94
Query: 145 VQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSD 201
V + A+E+LN T + K I S R PA + T N+F+KNLDS
Sbjct: 95 VNYNNTADGERALEDLNYTLIKGKPCR----IMWSQR---DPALRKTGQGNVFIKNLDSA 147
Query: 202 VTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+ + L + F+ FG I S +A+DE G S+G+GFV+++ + A A++ +NG ++ K +
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 262 YAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTIT 321
+ K +R+ +FEE +K +NVY+KNID DVT+EE + F + G IT
Sbjct: 208 FVGHHISKKDRQ----SKFEE------MKANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 322 SAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQL 381
SA + RD++G ++GFGFV FS+ E A AV+ + + + LYV AQ+K +R+ L+
Sbjct: 258 SATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRK 317
Query: 382 QY 383
QY
Sbjct: 318 QY 319
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 245/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 187
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 188 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 247 FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI +G +Y+KN+DD + DE+
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A+KA+ +G +L KPL +A+A
Sbjct: 367 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Query: 370 QR 371
QR
Sbjct: 426 QR 427
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 152/299 (50%), Gaps = 28/299 (9%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEH 206
A A++ +N + K I R++ S Y N+F+KNLD + +
Sbjct: 122 AQKALDTMNFDIIKGKSI----------RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 171
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E FS FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ ++ R
Sbjct: 172 LYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRF 230
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+ + +RE LR + E +N+Y+KN D+ DE LK FS+ G S KVM
Sbjct: 231 KNRKDREAELRSKASE----------FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVM 280
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
D G +KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 281 TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
Score = 42.4 bits (98), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GF 336
H ++K KY+ +++YV ++ DVT++ L FS G + S ++ RD+ G+
Sbjct: 52 HSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGY 111
Query: 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+V F +A KA++T + ++ K + + +QR
Sbjct: 112 AYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQR 146
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 335 bits (860), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 183/414 (44%), Positives = 269/414 (64%), Gaps = 36/414 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL D ++G LF+ F+ +AS+RVC+D+ T RS Y YVNF + DA RA++
Sbjct: 13 ASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALD 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + K RI WS RDP RKSGV N+FVKNL SID+ L + F FGNI+SCKV
Sbjct: 73 TMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDSSIDHKALFDTFSLFGNILSCKV 132
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT E G+S+G+G+V +E+E++A AI +N T+ DK +YVG F+++++R S + +T
Sbjct: 133 ATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTER---SGQSDWT 189
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KN +D E L + F F +G++ FG+VNF+ D A A++A+
Sbjct: 190 NLYVKNFPADWDEATLRKAFEMFAA---------ADGSA--FGWVNFEGHDAAVAAMDAL 238
Query: 252 NGS-----------VIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
NG+ + L+ RAQKK ERE+ L+ +F+ + ERI KY+G N++VKN
Sbjct: 239 NGASELPGHAGTAPITLKSPLFVGRAQKKVERERELKAKFDAAKIERIKKYQGVNLFVKN 298
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
+DD + D++L+ HF++ GTITSA+VMR+ G ++GFGFVCFSSPEEA+KAV + ++
Sbjct: 299 LDDALDDDQLREHFTEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLV 358
Query: 360 HRKPLYVAIAQRKEDRQAHLQLQYAQ-----HMAGIEGSSANVI-----PSGYP 403
KP++VA+AQRKE R+A L+ Q+AQ H++ G++ ++ P G+P
Sbjct: 359 LGKPIFVALAQRKEVRRAQLEAQHAQRLHPAHLSAPYGAAMPIMYAAGAPGGHP 412
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 57/72 (79%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
LA SP QK ++GERLYPL+ +P+L KITGMLLEMDNSELL LLESP++L +KV E
Sbjct: 536 LANASPTLQKNMIGERLYPLIHHSQPELAGKITGMLLEMDNSELLHLLESPDALRMKVAE 595
Query: 600 AVQVLKLSEAKV 611
A++VLK +A++
Sbjct: 596 ALEVLKQHQAQL 607
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 245/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 187
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 188 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 247 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI +G +Y+KN+DD + DE+
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A+KA+ +G +L KPL +A+A
Sbjct: 367 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Query: 370 QR 371
QR
Sbjct: 426 QR 427
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 152/299 (50%), Gaps = 28/299 (9%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEH 206
A A++ +N + K I R++ S Y N+F+KNLD + +
Sbjct: 122 AQKALDTMNFDIIKGKSI----------RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 171
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E FS FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ ++ R
Sbjct: 172 LYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRF 230
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+ + +RE LR + E +NVY+KN D+ DE LK FS+ G S KVM
Sbjct: 231 KNRKDREAELRSKASE----------FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVM 280
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
D G +KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 281 TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
Score = 42.4 bits (98), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GF 336
H ++K KY+ +++YV ++ DVT++ L FS G + S ++ RD+ G+
Sbjct: 52 HSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGY 111
Query: 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+V F +A KA++T + ++ K + + +QR
Sbjct: 112 AYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQR 146
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 334 bits (857), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 165/362 (45%), Positives = 245/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 187
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 188 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 247 FTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI +G +Y+KN+DD + DE+
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A+KA+ +G +L KPL +A+A
Sbjct: 367 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Query: 370 QR 371
QR
Sbjct: 426 QR 427
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 152/299 (50%), Gaps = 28/299 (9%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEH 206
A A++ +N + K I R++ S Y N+F+KNLD + +
Sbjct: 122 AQKALDTMNFDIIKGKSI----------RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 171
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E FS FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ ++ R
Sbjct: 172 LYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRF 230
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+ + +RE LR + E +N+Y+KN ++ DE LK FS+ G S KVM
Sbjct: 231 KNRKDREAELRSKASE----------FTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVM 280
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
D G +KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 281 TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
Score = 42.4 bits (98), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GF 336
H ++K KY+ +++YV ++ DVT++ L FS G + S ++ RD+ G+
Sbjct: 52 HSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGY 111
Query: 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+V F +A KA++T + ++ K + + +QR
Sbjct: 112 AYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQR 146
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 187/422 (44%), Positives = 268/422 (63%), Gaps = 11/422 (2%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL PDVT+ +L FS + SV +C++S TG+S CY Y+NF SP A A+
Sbjct: 21 ASLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDSPFSASNAMA 80
Query: 72 VKNHTQLHGKMLRISWSCRDPDARK-SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
NHT L GK +RI WS RD R+ +G NL+VKNL SI + L+ MF FG I+SCK
Sbjct: 81 RLNHTDLKGKAMRIMWSQRDLSYRRRTGFGNLYVKNLDISITSSGLERMFNPFGVILSCK 140
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY 190
V E+G+SKG GFVQFETE+SA A L+G+ V K+++V +FI K++RV + +
Sbjct: 141 V-VEENGQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLFVAKFINKNERVAMAGNKGF 199
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN+++KNL ++TE+ L FS++G ++S+++ RD G SRGFGFVNF +P++A++A+++
Sbjct: 200 TNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDS 259
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILK--YKGSNVYVKNIDDDVTDE 308
++G +GSK L+ +A K+ ER ++L+H++ R I K + SN+YVKN+ + + D
Sbjct: 260 LHGRQVGSKTLFVGKALKRDERREMLKHKY---RDNFIAKSNMRWSNLYVKNLSESMNDT 316
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F + G I SAKVMR E G +KGFGFVCFS+ EE+ +A +G+ + K L V +
Sbjct: 317 TLREIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVRV 376
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQP 427
A+RKEDR LQ QY H + A ++PS P L Y P P G Y
Sbjct: 377 AERKEDRLKRLQ-QYF-HAQPRHYTQAPLVPSPAQPVLSY-VPSSYGYLQPFHVGASYYY 433
Query: 428 LG 429
+G
Sbjct: 434 MG 435
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 131/279 (46%), Gaps = 35/279 (12%)
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDAR 245
++ + +L++ +L DVTE+ L+ +FS + S+ + R+ G S + ++NFD+P A
Sbjct: 17 SSMFASLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDSPFSAS 76
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
A+ +N + + K + +Q+ + R F N+YVKN+D +
Sbjct: 77 NAMARLNHTDLKGKAMRIMWSQRDLSYRR--RTGF-------------GNLYVKNLDISI 121
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
T L+ F+ G I S KV+ +E G +KGFGFV F + + A A + HG M+ K L+
Sbjct: 122 TSSGLERMFNPFGVILSCKVV-EENGQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLF 180
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMY 425
VA K +R A MAG +G + + +L I+ ++ + G +
Sbjct: 181 VAKFINKNERVA---------MAGNKGFTNVYV----KNLIENITEDILHRLFSQYGTVS 227
Query: 426 QPLGLRTGW---RANGFVPPTRPAFQVSPLPVNPKHNRQ 461
+ +R G R GFV P + + V+ H RQ
Sbjct: 228 SVVVMRDGMGRSRGFGFVNFCHP--ENAKKAVDSLHGRQ 264
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 166/361 (45%), Positives = 242/361 (67%), Gaps = 4/361 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 130 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAELRSKASE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 189 FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI Y+G +YVKN+DD + DE+
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEK 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I KVM+ E G +KGFGF+CFSS E+A+KA+ +G L KP+ +A+A
Sbjct: 309 LRNEFSSFGSIIRVKVMQQE-GQSKGFGFICFSSLEDATKAMIEMNGCFLGSKPISIALA 367
Query: 370 Q 370
Q
Sbjct: 368 Q 368
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 153/299 (51%), Gaps = 28/299 (9%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTD 63
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEH 206
A A++ +N + K I R++ S Y N+F+KNLD + +
Sbjct: 64 AQKALDTMNFDIIKGKSI----------RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 113
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E FS FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ S ++ R
Sbjct: 114 LYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRF 172
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+ + +RE LR + E +N+Y+KN D+ DE LK FS+ G S KVM
Sbjct: 173 KNRKDREAELRSKASE----------FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVM 222
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
D G +KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 223 TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 281
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/325 (49%), Positives = 222/325 (68%), Gaps = 2/325 (0%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P + ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ S D
Sbjct: 58 PHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTAD 117
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 118 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGN 177
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E+G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K DR
Sbjct: 178 ILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKF 237
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A YTN+++KN++ +VTEE E FSK+G++ S +ARD+ G SRGFGFVNF D
Sbjct: 238 EEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDS 297
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A+E +NG + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+ D
Sbjct: 298 AAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLAD 357
Query: 304 DVTDEELKAHFSQCGTITSAKVMRD 328
D+ D++L+ FS+ G ITSAKVMRD
Sbjct: 358 DIDDDKLRQMFSEFGPITSAKVMRD 382
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 165/290 (56%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F G++ S C+ A + +S G+ +V + + A
Sbjct: 64 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNSTADGEKA 121
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + + I S R PA + T N+F+KNLD+ + + L + F+
Sbjct: 122 LEELNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDTAIDNKALHDTFAA 174
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DENG S+G+GFV+++ + A +A++ +NG ++ K +Y K +R+
Sbjct: 175 FGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ 234
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +NVYVKNI+ +VT+EE + FS+ G +TS+ + RD++G +
Sbjct: 235 ----SKFEE------MKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKS 284
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV FS+ + A+KAV +G + LYV AQ+K +R+ L+ Y
Sbjct: 285 RGFGFVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSY 334
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 160/351 (45%), Gaps = 72/351 (20%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++++ +L + + L D F+ F ++ S +V +D G S YG+V++ + A +
Sbjct: 149 TGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEN-GNSKGYGFVHYETDEAAAQ 207
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDAR------KSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + + D + K+ N++VKN+ + +E+F
Sbjct: 208 AIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYVKNINLEVTEEEFRELFSK 267
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR- 181
+G + S +A ++GKS+G GFV F T +SA A+E LNG + +YVGR KK +R
Sbjct: 268 YGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHERE 327
Query: 182 ---------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD----- 225
A KY NL++KNL D+ ++ L + FS+FG I S + RD
Sbjct: 328 EELRKSYEAARAEKANKYQGVNLYIKNLADDIDDDKLRQMFSEFGPITSAKVMRDNPPDH 387
Query: 226 -----------EN-------------------------------------GTSRGFGFVN 237
EN G S+GFGFV
Sbjct: 388 HHSADKEGKDKENKKEGEQEAKKEGKEEGEKDGEAKEGEKKTEKKPERKLGKSKGFGFVC 447
Query: 238 FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
F NPDDA +A+ MN ++ K LY A AQ+K R+ L + + + R+
Sbjct: 448 FSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRKSQLEASIQARNQLRM 498
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 34/244 (13%)
Query: 152 SANAAIENLNGTTVGDKR-------IYVGRF-IKKSDRVLPSPAAKY------TNLFMKN 197
+A+ A NLNG GD R + G + D P+P++ +L++
Sbjct: 14 AADLANTNLNG---GDNRAPAINSNVASGESQTAEPDTAGPTPSSSAPHPQSSASLYVGE 70
Query: 198 LDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVI 256
LD VTE L E FS+ G +AS+ + RD S G+ +VN+++ D +ALE +N ++I
Sbjct: 71 LDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEELNYTLI 130
Query: 257 GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQ 316
K +I+ Q R + K NV++KN+D + ++ L F+
Sbjct: 131 ------------KGRPCRIMWSQ----RDPALRKTGQGNVFIKNLDTAIDNKALHDTFAA 174
Query: 317 CGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQ 376
G I S KV +DE G +KG+GFV + + E A++A+ +G +L+ K +YV K+DRQ
Sbjct: 175 FGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ 234
Query: 377 AHLQ 380
+ +
Sbjct: 235 SKFE 238
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 535 MLNGMLAAPS-PEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
+L LAA S P+QQKQILGE L+P ++ +P+L KITGMLLEMDN+EL+ LLE +L
Sbjct: 682 LLQSQLAATSNPQQQKQILGENLFPKIQALQPELAGKITGMLLEMDNNELVNLLEDETAL 741
Query: 594 AVKVEEAVQV 603
KV EA+ V
Sbjct: 742 VAKVNEAMAV 751
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 168/362 (46%), Positives = 243/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 287 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALD 346
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 347 TMNFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILSSKV 406
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
S+D SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 407 -MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSKASE 465
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 466 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 525
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ ARAQKK ER+ L+ FE+ + ERI + +YVKN+DD + DE+
Sbjct: 526 EMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEK 585
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A KA+ +G +L KPL +A+A
Sbjct: 586 LRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALA 644
Query: 370 QR 371
QR
Sbjct: 645 QR 646
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 150/288 (52%), Gaps = 16/288 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L F G ++S ++ + +S G+ +V F A A+
Sbjct: 286 MASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKAL 345
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I + + D L N+F+KNLD + + L E FS FG+I
Sbjct: 346 DTMNFDVIQGKSIRL--MWSQRDAYLRRSG--IGNVFIKNLDKSIDNKTLYEHFSAFGRI 401
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + D+ G S+G+ FV+F N A RA+E MNG ++ ++ R + + +RE LR
Sbjct: 402 LSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELR 460
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ E +NVY+KN D+ DE LK FS+ G S KVM D G +KGFG
Sbjct: 461 SKASEF----------TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFG 510
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F S E A KAV +G ++ + ++VA AQ+K +RQA L+ + Q
Sbjct: 511 FVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQ 558
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 272 REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG 331
REQ Q EE E KY+ +++YV ++ DVT++ L FS G + S ++ RD+
Sbjct: 267 REQAHSGQDEEMDVE--AKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLT 324
Query: 332 INK-GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
G+ +V F +A KA++T + ++ K + + +QR
Sbjct: 325 RRSLGYAYVNFLHLADAQKALDTMNFDVIQGKSIRLMWSQR 365
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 167/362 (46%), Positives = 243/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL SIDN L E F FG I+S KV
Sbjct: 70 TMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
S+D S+G+ FV F+ + +A+ AIE +NG + D R++VGRF + DR + A +
Sbjct: 130 -MSDDHGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEFQNKAHE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L E FSK+GK S+ + D +G S+GFGFV+FD+ + A+RA+E
Sbjct: 189 FTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++L+ RAQKKAER+ L+ FE+ + ER + +G+ +Y+KN+D+ + DE+
Sbjct: 249 EMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGAKLYIKNLDETIDDEK 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSS EEA+KA+ +G +L KPL +A+A
Sbjct: 309 LRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALA 367
Query: 370 QR 371
Q+
Sbjct: 368 QK 369
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 152/293 (51%), Gaps = 28/293 (9%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIE 158
A+L+V +L + L + F G ++S ++ +S G+ +V F A A++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEHLVEKFS 212
+N + K I R++ S Y N+F+KNLD + + L E FS
Sbjct: 70 TMNFDLIKGKSI----------RLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFS 119
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FGKI S + D++G SRG+ FV+F N A RA+E MNG+++ L+ R + + +R
Sbjct: 120 AFGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDR 178
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
E +F+ K E +NVY+KN D++ DE L FS+ G S KVM D G
Sbjct: 179 EA----EFQNKAHE------FTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGK 228
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+KGFGFV F S E A +AV +G ++ + L+V AQ+K +RQA L+ + Q
Sbjct: 229 SKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQ 281
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 165/361 (45%), Positives = 245/361 (67%), Gaps = 4/361 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 70 TMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
S+D SKG+ FV F+++ +A+ AIE +NG + D +++VGRF + DR L + A++
Sbjct: 130 -MSDDRGSKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAELRNKASE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FS +G+I S+ + + G SRGFGFV+FD+ + AR+A+E
Sbjct: 189 FTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEAARKAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + + ++ RAQKK ER+ L+ FE+ +KERI +G+ +Y+KN+D+++ DE+
Sbjct: 249 EMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYIKNLDENIDDEK 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSS E+A++A+ +G +L KPL +A+A
Sbjct: 309 LRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSSEDAARAMTVMNGRILGSKPLNIALA 367
Query: 370 Q 370
Q
Sbjct: 368 Q 368
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 154/299 (51%), Gaps = 28/299 (9%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEES 152
A K +A+L+V +L + L + F G ++S ++ +S G+ +V F
Sbjct: 4 AAKYRMASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEH 206
A A++ +N V K I R++ S Y N+F+KNLD + +
Sbjct: 64 AQKALDTMNFDVVKGKAI----------RLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKS 113
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E FS FGKI S + D+ G S+G+ FV+F + A RA+E MNG + ++ R
Sbjct: 114 LYECFSAFGKILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRF 172
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+ + +RE LR++ E +NVY+KN DD+ DE L+ FS G I S KVM
Sbjct: 173 KSRKDREAELRNKASE----------FTNVYIKNFGDDMDDERLREVFSTYGRILSVKVM 222
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+ G ++GFGFV F S E A KAV +G ++ +P++V AQ+K +RQA L+ + Q
Sbjct: 223 TNSCGKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQ 281
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 166/361 (45%), Positives = 241/361 (66%), Gaps = 4/361 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 136 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALD 195
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 196 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILSSKV 255
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 256 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAELRSKASE 314
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D G S+GFGFV+FD+ + A++A+E
Sbjct: 315 FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHEAAKKAVE 374
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI Y+G +YVKN+DD + DE+
Sbjct: 375 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEK 434
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I KVM+ E G +KGFGF+CFSS E+A+KA+ +G L KP+ +A+A
Sbjct: 435 LRNEFSSFGSIIRVKVMQQE-GQSKGFGFICFSSLEDATKAMIEMNGRFLGSKPISIALA 493
Query: 370 Q 370
Q
Sbjct: 494 Q 494
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 154/299 (51%), Gaps = 28/299 (9%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 130 AAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTD 189
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEH 206
A A++ +N + K I R++ S Y N+F+KNLD + +
Sbjct: 190 AQKALDTMNFDIIKGKSI----------RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 239
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E FS FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ S ++ R
Sbjct: 240 LYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRF 298
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+ + +RE LR + E +N+Y+KN D+ DE LK FS+ G S KVM
Sbjct: 299 KNRKDREAELRSKASE----------FTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVM 348
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
D +G +KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 349 TDSRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 407
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GF 336
H ++K KY+ +++YV ++ DVT++ L FS G + S ++ RD+ G+
Sbjct: 120 HSGKDKEMSVAAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGY 179
Query: 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+V F +A KA++T + ++ K + + +QR
Sbjct: 180 AYVNFLQLTDAQKALDTMNFDIIKGKSIRLMWSQR 214
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 168/362 (46%), Positives = 242/362 (66%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH +VT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
S+D S+G+ FV F+++ +A+ AIE +NG + R++VG F + DR L + A +
Sbjct: 130 -MSDDAGSRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQNKANE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FS FGKI S+ + D G S+GFGFV+FD+ + A+RA+E
Sbjct: 189 FTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGFVSFDSHEAAQRAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + + L+ RAQKKAER+ L+ FE+ ++ER +++G +Y+KN+DD + DE
Sbjct: 249 IMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMKQERYRRFRGVKLYIKNLDDSIDDER 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPEEA+KA+ +G +L K L +A+A
Sbjct: 309 LRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATKAMVEMNGRILGSKSLNIALA 367
Query: 370 QR 371
QR
Sbjct: 368 QR 369
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 153/293 (52%), Gaps = 28/293 (9%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIE 158
A+L+V +L + L + F G ++S ++ +S G+ +V F A A++
Sbjct: 10 ASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALD 69
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEHLVEKFS 212
+N + K I R++ S Y N+F+KNL + + L E FS
Sbjct: 70 TMNFDMIKGKSI----------RLMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFS 119
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FGKI S + D+ G SRG+ FV+F + A RA+EAMNG+++ L+ + + +R
Sbjct: 120 AFGKILSSKVMSDDAG-SRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDR 178
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
+ L+++ E +NVY+KN DD+ DE LK FS G I S KVM D +G
Sbjct: 179 QAELQNKANE----------FTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGR 228
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+KGFGFV F S E A +AV +G L +PL+V AQ+K +RQA L+L + Q
Sbjct: 229 SKGFGFVSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQ 281
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 22/197 (11%)
Query: 188 AKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDA 244
AKY +L++ +L ++VTE+ L +KFS G + S+ I RD S G+ +VNF + DA
Sbjct: 5 AKYRQASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADA 64
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG-SNVYVKNIDD 303
++AL+ MN +I K + +Q+ A L+ G NV++KN+
Sbjct: 65 QKALDTMNFDMIKGKSIRLMWSQRDA-----------------YLRKSGIGNVFIKNLHK 107
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L HFS G I S+KVM D+ G ++G+ FV F S A +A+ +G +L
Sbjct: 108 SIDNKTLYEHFSAFGKILSSKVMSDDAG-SRGYAFVHFQSQTAADRAIEAMNGALLKGCR 166
Query: 364 LYVAIAQRKEDRQAHLQ 380
L+V + ++DRQA LQ
Sbjct: 167 LFVGPFKNRKDRQAELQ 183
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 169/369 (45%), Positives = 245/369 (66%), Gaps = 4/369 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T S Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 130 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRSKASE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 189 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ ARAQKK ER+ L+ FE+ +KERI + +YVKN+DD + DE+
Sbjct: 249 EMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDEK 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A KA+ +G +L KPL +A+A
Sbjct: 309 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALA 367
Query: 370 QRKEDRQAH 378
Q E R H
Sbjct: 368 QCSELRLCH 376
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 151/294 (51%), Gaps = 28/294 (9%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSK-GHGFVQFETEESANAAI 157
+A+L+V +L + L F G ++S ++ + +S G+ +V F A A+
Sbjct: 9 MASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKAL 68
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEHLVEKF 211
+ +N + K I R++ S Y N+F+KNLD + + L E F
Sbjct: 69 DTMNFDIIKGKSI----------RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHF 118
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
S FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ ++ R + + +
Sbjct: 119 SAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKD 177
Query: 272 REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG 331
RE LR + E +NVY+KN D+ DE LK FS+ G S KVM D G
Sbjct: 178 REAELRSKASE----------FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 227
Query: 332 INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+KGFGFV F S E A KAV +G ++ + ++VA AQ+K +RQA L+ + Q
Sbjct: 228 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQ 281
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 168/330 (50%), Positives = 227/330 (68%), Gaps = 4/330 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT LF+ FS + S+RVCKD T RS Y YVNF P DA RA++
Sbjct: 13 ASLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALD 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 73 TMNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 132
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+A +I+ +NG + K+++VG+FI K+ ++ L A
Sbjct: 133 AQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREKELGEKAKL 192
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D T++ L E F K+G I S + +++ SRGFGFV F++P+ A RA+E
Sbjct: 193 FTNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFVAFEDPEAAERAVE 252
Query: 250 AMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG +I K LY RAQKKAER+Q L+ +FE+ + ER+ +Y+G N+YVKN+DD + DE
Sbjct: 253 DLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQLKMERMNRYQGVNLYVKNLDDTIDDE 312
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
L+ FS GTITSAKVM +E+ +KGFGF
Sbjct: 313 RLRKEFSPFGTITSAKVMLEERR-SKGFGF 341
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 160/289 (55%), Gaps = 16/289 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F + G ++S +V +S G+ +V F+ A A+
Sbjct: 12 MASLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERAL 71
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N T+ + I I S R + N+F+KNLD ++ + + + FS FG I
Sbjct: 72 DTMNFDTLKGRPIR----IMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNI 127
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A+DE+G+S+G+GFV+F+ + A ++++ +NG ++ K ++ + + ERE+ L
Sbjct: 128 LSCKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREKELG 187
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
K ++ +NVYVKN +D TD+ LK F + G ITS V+ ++ ++GFG
Sbjct: 188 E------KAKLF----TNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFG 237
Query: 338 FVCFSSPEEASKAVNTFHGY-MLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F PE A +AV +G ++ K LYV AQ+K +RQ L+ ++ Q
Sbjct: 238 FVAFEDPEAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQ 286
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 105/195 (53%), Gaps = 17/195 (8%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P +L++ +L SDVT+ L EKFS G + S+ + +D S G+ +VNF P DA
Sbjct: 8 PNYPMASLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADA 67
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN + + + +Q R+ LR K NV++KN+D +
Sbjct: 68 ERALDTMNFDTLKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDKN 111
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ + FS G I S KV +DE G +KG+GFV F + E A+K+++ +G +L+ K +
Sbjct: 112 IDNKAMYDTFSAFGNILSCKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKV 171
Query: 365 YVAIAQRKEDRQAHL 379
+V +++R+ L
Sbjct: 172 FVGKFIPRKEREKEL 186
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 165/327 (50%), Positives = 219/327 (66%), Gaps = 3/327 (0%)
Query: 5 PPTATT-PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P TA ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 53 PSTAAQHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 112
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 113 ADGERALEDLNYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQF 172
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 173 GNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQS 232
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L A +TN+++KN+D V++E + F +G++ S I RDENG SRGFGFVNF +
Sbjct: 233 KLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASH 292
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+ A +A+E +N K LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+
Sbjct: 293 ESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAARMEKASKYQGVNLYVKNL 352
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRD 328
DDV D++L+ FS GTITSAKVMRD
Sbjct: 353 TDDVDDDKLRELFSSYGTITSAKVMRD 379
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 160/290 (55%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F + G + S C+ A + +S G+ +V + A
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERA 118
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E+LN T++ + I S R PA + T N+F+KNLD+ + + L + FS+
Sbjct: 119 LEDLNYTSIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDAAIDNKALHDTFSQ 171
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE G S+G+GFV+++ + A +A++++NG ++ K ++ K +R+
Sbjct: 172 FGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQ 231
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
L +K +NVY+KNID+ V+DEE F G + SA + RDE G +
Sbjct: 232 SKLEE----------MKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKS 281
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV F+S E A+KAV + H K LYV AQ+K +R+ L+ QY
Sbjct: 282 RGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELRRQY 331
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/314 (33%), Positives = 155/314 (49%), Gaps = 48/314 (15%)
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQHMA 388
G +KGFGFVCFS+P+EASKAV+ + M++ KPLYVA+AQRK+ R+ L+ +Q +
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRKDVRRNQLEASIQARNTLR 499
Query: 389 GIEGSSANVIPSGY--PSLYYT----TPPGIVSQVP--PRPGLMYQ---------PLGLR 431
+ ++A +P GY P+++Y PPG +P +PG++ P G
Sbjct: 500 QQQQAAAAGMPQGYIQPTVFYPGQQFLPPGAQRGMPFAGQPGMVIPGMQGGRGQFPGGFP 559
Query: 432 TGWRA--------NGFVPPTRPAFQVSPLPVNPKHNR-QNRGRMNGNMLPQVGAHYMQQS 482
G R F P + F +P VN +N Q +M G M G Q
Sbjct: 560 QGGRGIPQGQQLPPNFGLPGQMPFIQNPALVNGMYNNPQALAQMQGQMGRGAGGRGQMQG 619
Query: 483 SQS-------AASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMA----- 530
Q + N +GG+ G ++ + G G G M
Sbjct: 620 MQGMPPNMQGMGGMRGGPNFPQGGR------GGMQNIPGGQGAGRIPPQGRGQMIPNREE 673
Query: 531 -RKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES 589
P L+ + + P QQKQILGE +YP +++ +P+L KITGMLLEMDNSELL L++
Sbjct: 674 INTPSSLHNLASLPQ-SQQKQILGEAIYPKIQQIQPELAGKITGMLLEMDNSELLSLVDD 732
Query: 590 PESLAVKVEEAVQV 603
+L KV+EA++V
Sbjct: 733 DAALRSKVDEALRV 746
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 228 GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKER 287
G S+GFGFV F NPD+A +A+ MN ++ K LY A AQ+K + R+Q E + R
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRK----DVRRNQLEASIQAR 495
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 211/535 (39%), Positives = 299/535 (55%), Gaps = 64/535 (11%)
Query: 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQ 146
WS RDP +R+SG N+F+KNL +IDN L + F FG I+SCKVAT + G+SK GFV
Sbjct: 2 WSQRDPSSRRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFVH 61
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAKYTNLFMKNLDSDVTE 204
+ET E+A AAIEN+NG + D+ +YVG+ I K DR A YTN+++KN+D + ++
Sbjct: 62 YETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFSD 121
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
E + F FG I S+ + +D++G S+GFGFVN++ + A +A+E +N I + +Y
Sbjct: 122 EEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYVG 181
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK 324
RAQKK ER + L+ Q+E R ER+ KY+G N++VKN+DD + E+L+ F G+ITSAK
Sbjct: 182 RAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAK 241
Query: 325 VMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL--QLQ 382
VM DE G +KGFGFVCFSSPEEA+KA+ + M+ KPLYVA+AQRK+ R++ L Q+Q
Sbjct: 242 VMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLEQQIQ 301
Query: 383 YAQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQVP---PRPGLMYQPLGLRTGW 434
M +++ IP + P ++Y PP P P P +M +R G
Sbjct: 302 ARNQMRMQNAAASGGIPGQFIPPMFYGQQGFFPPNGRGNAPFPGPNPQMM-----MRRGQ 356
Query: 435 RANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSN 494
+ G RP P+PV + PQ Q Q
Sbjct: 357 QFPGPEQWPRPGPNGQPVPVY-------------GIPPQFQDFNGQPMRQ---------- 393
Query: 495 QQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGE 554
QQ+GG Y PN R NKG R+ L ++A P+QQK+ILGE
Sbjct: 394 QQRGG---YYPN---RNQNKG--------------GRQQKDLAAIIANAPPDQQKRILGE 433
Query: 555 RLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
LYP + + +P+ KITGM+L ++N E+L LLE E E+A+ +
Sbjct: 434 ELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLEDDELFNNHFEDALTAFE 488
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 161/295 (54%), Gaps = 19/295 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +LHP + + L D FS F + S +V D G+S C+G+V++ + A AIE
Sbjct: 15 GNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDD-MGQSKCFGFVHYETAEAAEAAIE 73
Query: 72 VKNHTQLHGKMLRIS--WSCRDPDAR----KSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
N L+ + + + S +D +++ K+ N++VKN+ + +++F FG
Sbjct: 74 NVNGMLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFSDEEFEKLFVPFGT 133
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP- 184
I S + +DGKSKG GFV +ET ESA A+E LN + ++IYVGR KK +R+
Sbjct: 134 ITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYVGRAQKKRERMEEL 193
Query: 185 ---------SPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
+KY NLF+KNLD + E L E+F FG I S + DE G S+GF
Sbjct: 194 KKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVDEAGKSKGF 253
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
GFV F +P++A +A+ MN +I K LY A AQ+K R L Q + + + R+
Sbjct: 254 GFVCFSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLEQQIQARNQMRM 308
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 164/362 (45%), Positives = 242/362 (66%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH + T+ LF FS + S+R+C+D T + Y YVNFL DA RA++
Sbjct: 10 ASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQRALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +R+ WS RD R+SG+ N+FVKNL S+DN L E F FG I+S KV
Sbjct: 70 TMNFDVIKGRPIRLMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+++ +AN AIE +NG + D+ ++V F + DR L S A++
Sbjct: 130 MSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAELRSRASE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L FS++GK S+ + D +G S+GFGFV+F++ + A+RA+E
Sbjct: 189 FTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEAAKRAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++++ RAQKK ER+ L+H FE+ +KERI + +G +YVKN+DD V DE+
Sbjct: 249 EMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKNLDDTVDDEQ 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+IT KVM++E G ++GFG +CFSSPEEA+KA+ +G +L K L +A+A
Sbjct: 309 LRKEFSSFGSITRVKVMKEE-GYSRGFGLICFSSPEEAAKALTEMNGRVLGSKALSIALA 367
Query: 370 QR 371
QR
Sbjct: 368 QR 369
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 149/293 (50%), Gaps = 16/293 (5%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSK-GHGFVQFETEES 152
A K +A+L+V +L L F G ++S ++ + G+ +V F
Sbjct: 4 AAKYRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLAD 63
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
A A++ +N + + I + + D L N+F+KNLD V + L E FS
Sbjct: 64 AQRALDTMNFDVIKGRPIRL--MWSQRDACLRRSG--IGNVFVKNLDRSVDNKTLYEHFS 119
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FGKI S + D+ G S+G+ FV+F + A A+E MNG VI + ++ A + + +R
Sbjct: 120 GFGKILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDR 178
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
E LR + E +NVY+KN DD+ DE L+ FS+ G S KVM D G
Sbjct: 179 EAELRSRASE----------FTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGK 228
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+KGFGFV F S E A +AV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 229 SKGFGFVSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQ 281
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 241/722 (33%), Positives = 352/722 (48%), Gaps = 143/722 (19%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 110 ADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 169
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 170 GNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 229
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KN++ DVT+E F K+G+I S ++RD E G SRGFGFVNF +
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 241 PDDARRALEAMNGSVIGSKVLY-------------------AARAQKKAEREQI------ 275
+ A A+EA+N + + LY AAR +K ++ + +
Sbjct: 290 HEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKN 349
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTD---------------------------- 307
L ++++ + G+ K + + + D
Sbjct: 350 LSDDIDDEKLRELFSSYGNITSAKVMREAIVDAPAEAEKDKEADKEKAKKEAGDKSEEKG 409
Query: 308 -------EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
++ K+ G SAK + G +KGFGFVCFS+P+EASKAV + M+H
Sbjct: 410 EAKSESEDKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVH 469
Query: 361 RKPLYVAIAQRKEDR----QAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP------ 410
KPLYVA+AQRK+ R +A +Q + + ++ P P+++Y P
Sbjct: 470 GKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMAQPFMQPAVFYGAPGQQGFL 529
Query: 411 PG-------------IVSQVPP-RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNP 456
PG ++ +P RPG Q G + G R P P F + + P
Sbjct: 530 PGAQRGMQFAGQAGMVMPGMPSGRPGQFPQFPG-QQGGRGMNPNQPLPPNFAMGNQAI-P 587
Query: 457 KHNRQNRGRMNGNMLPQVG--------AHYMQQSSQSAASSKDSSNQQKGG-------QS 501
Q G NG PQ+G Q Q + ++ Q +GG Q
Sbjct: 588 MGAMQGAGIPNGLNYPQIGQVQSFGRGGGRGQGPMQGMPPAAGNAPQMRGGPGAPGFAQG 647
Query: 502 KYVPNGRI-------------------RELNKGSG-VSLGTFNSGGVMARKPDMLNGMLA 541
+ +P + R+ GSG ++L FN A
Sbjct: 648 RNMPIQQGGRAGPGGRGQGAPGQGGIPRDEAAGSGSINLAVFN----------------A 691
Query: 542 APSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAV 601
AP P QQKQ+LGE +YP + +P+L KITGMLLEMDNSEL+ L++ +L KV+EA+
Sbjct: 692 APEP-QQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEAL 750
Query: 602 QV 603
V
Sbjct: 751 TV 752
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 183/425 (43%), Positives = 261/425 (61%), Gaps = 50/425 (11%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ ++AS+RVC+D+ T RS Y YVN+ S D
Sbjct: 49 PHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPD 108
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 109 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 168
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E+G SKG+GFV +ET+E+A AI+++NG + +K++YVG I K DR
Sbjct: 169 ILSCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 228
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A +TN+++KN+ +VT++ E F + G + S IAR+++G SRGFGFVNF +
Sbjct: 229 EEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEA 288
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A +A+E +N + + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+DD
Sbjct: 289 AAKAVEELNNKDLHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDD 348
Query: 304 DVTDEELKAHFSQCGTITSAKVMR----------------------------------DE 329
DV D++L+ F++ G ITSAKVMR DE
Sbjct: 349 DVDDDKLRIMFAEFGPITSAKVMRDSPSDDDEEEESKEAEDKDKENKKEEEKKDQNPDDE 408
Query: 330 KG--------------INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
+ +KGFGFVCFS+P++A+KAV + M++ KPLYVA+AQRK+ R
Sbjct: 409 ENDKDKKDKKGSKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVR 468
Query: 376 QAHLQ 380
++ L+
Sbjct: 469 KSQLE 473
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 168/301 (55%), Gaps = 27/301 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F G + S C+ A + +S G+ +V + + A
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTR--RSLGYAYVNYNSTPDGEKA 112
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + + I S R PA + T N+F+KNLD + + L + F+
Sbjct: 113 LEELNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 165
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DENG+S+G+GFV+++ + A++A++ +NG ++ K +Y K +R+
Sbjct: 166 FGNILSCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQ 225
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +NVYVKNI +VTD+E + F + G +TS+ + R++ G +
Sbjct: 226 S----KFEE------MKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKS 275
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGS 393
+GFGFV F++ E A+KAV + LH + LYV AQ+K +R+ L+ Y A IE +
Sbjct: 276 RGFGFVNFTTHEAAAKAVEELNNKDLHGQELYVGRAQKKHEREEELRKSY--EAARIEKA 333
Query: 394 S 394
S
Sbjct: 334 S 334
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L ++ P QQKQ+LGE ++P ++ +L KITGMLLEMDNSEL+ L+E +L
Sbjct: 648 LQAQISGAPPAQQKQMLGEMIFPKIQAINGELAGKITGMLLEMDNSELINLIEDDAALKS 707
Query: 596 KVEEAVQV 603
KV+EA+ V
Sbjct: 708 KVDEALAV 715
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 181/400 (45%), Positives = 245/400 (61%), Gaps = 24/400 (6%)
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N +HG+ +RI WS RDP AR++G N+F+KNL IDN + + F FGNI+SCKVAT
Sbjct: 2 NFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVAT 61
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYT 191
++G SKG+GFV FETE SA AIE +NG + DK++YVG+F ++ R+ L KYT
Sbjct: 62 DDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYT 121
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+F+KN + +E L FSKFG+I S ++ D G +GFGFV F + D A +A+E +
Sbjct: 122 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKL 181
Query: 252 NGSVI-GSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
N S++ G+ L RAQKK+ER L+ ++E ++ER+ +Y+G N+YVKNI++D+ D+
Sbjct: 182 NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDG 241
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ HFS GTITSAKVM DE G +KGFGFVCF PEEA+ AV + M+ KPLYVA+A
Sbjct: 242 LRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 301
Query: 370 QRKEDRQAHLQLQYAQHMAGIE-GSSANVIPSGYPSLYYTTPPGIVSQVPP-------RP 421
QRKEDR+A L QY Q +A + G A SG P++ PG P RP
Sbjct: 302 QRKEDRRAQLASQYMQRLATLRMGQQA----SGVPAMTQLYQPGQQGYFVPNPMNAQGRP 357
Query: 422 GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQ 461
G Q +R PP + FQ P + RQ
Sbjct: 358 GFQPQSAQIRG--------PPGQRVFQNQMFMQYPFNQRQ 389
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 158/292 (54%), Gaps = 21/292 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +L + + ++D FS F ++ S +V D G S YG+V+F + H A AIE
Sbjct: 28 GNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIE 86
Query: 72 VKNHTQLHGKMLRIS----WSCRDPDARKSGV--ANLFVKNLIESIDNVRLQEMFQNFGN 125
N L K + + + R + +SG+ N+FVKN E +D +L MF FG
Sbjct: 87 KVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGE 146
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV--GDKRIYVGRFIKKSDR-- 181
I S V T GK KG GFV F +++A A+E LN + + D ++ V R KKS+R
Sbjct: 147 ITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSA 206
Query: 182 --------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSR 231
+ +Y NL++KN++ D+ ++ L + FS FG I S + DENG S+
Sbjct: 207 ELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSK 266
Query: 232 GFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
GFGFV F+ P++A A+ MN +IG+K LY A AQ+K +R L Q+ ++
Sbjct: 267 GFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQR 318
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYV ++ D+ D L D FS F ++ S +V D GRS +G+V F P +A A+
Sbjct: 227 NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTD 285
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL 107
N + K L ++ + R D R++ +A+ +++ L
Sbjct: 286 MNSKMIGAKPLYVALAQRKED-RRAQLASQYMQRL 319
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 236/713 (33%), Positives = 349/713 (48%), Gaps = 133/713 (18%)
Query: 6 PTATTP------ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVN 59
PT+ P ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN
Sbjct: 45 PTSAAPSAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVN 104
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
+ S D +A+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 105 YNSSDDGEKALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDT 164
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FGNI+SCKVA E+G SKG+GFV +ET E+AN AI+ +NG + +K+++VG I K
Sbjct: 165 FAAFGNILSCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKK 224
Query: 180 DRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFV 236
DR+ A +TN+++KN+D +VT++ E F K+G+I S +A D E G SRGFGFV
Sbjct: 225 DRMSKFEEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFV 284
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLY-------------------AARAQKKAEREQI-- 275
NF + A +A++ +N + LY AARA+K+++ + +
Sbjct: 285 NFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAARAEKQSKYQGVNL 344
Query: 276 ----LRHQFEEKRKERILKYKGSNVYVKNIDDDV-------------------------- 305
L ++++ + G+ K + D
Sbjct: 345 YVKNLHDDVDDEKLRDMFAPFGTITSAKVMRDTQPVGRSGSESPKKEGEEEEEEKKETEE 404
Query: 306 -------TDEELKAHFSQCGTITSAKVMRDEK---GINKGFGFVCFSSPEEASKAVNTFH 355
+DEE K + ++ E+ G +KGFGFVCFS+P+EA+KAV +
Sbjct: 405 KEPEKSGSDEENKDGVDKLTKEMDKVTIKGEQKILGKSKGFGFVCFSNPDEATKAVTEMN 464
Query: 356 GYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY---PSLYYTTP 410
M++ KPLYVA+AQRK+ R++ L+ +Q + + ++A +P+ P +++
Sbjct: 465 QKMMNGKPLYVALAQRKDVRKSQLEATIQARNQIRMQQAAAAAGMPTQQFVQPQMFFG-- 522
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGF-----------------VPPTRPAFQVSPLP 453
PG + R G M P G+ G R GF +PP F +PLP
Sbjct: 523 PGQQPFMGGR-GQMPFPQGMPAGGRGAGFPQGMPMQGGRGGPNAQQIPPMGMPFPGAPLP 581
Query: 454 --VNPKHNRQNR--------------GRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQK 497
+ P++N G Q + Q A+++ N +
Sbjct: 582 GGIPPQYNPAYAQMLAAQQAAMGGRGGSRGPMPGMPGMPGMPQMAGQIPANNRGGPNNRG 641
Query: 498 GGQSKY--VPNGRI---RELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQIL 552
G P+GR + G GV L S +P QQKQ+L
Sbjct: 642 GANRNQPGFPSGRPAPGQAPTPGEGVDLSALQSA-----------------APPQQKQML 684
Query: 553 GERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
GE LYP + +P+L KITGMLLEMDN+EL+ L +L KV+EA+ V +
Sbjct: 685 GEALYPKIHAMQPELAGKITGMLLEMDNTELINLTSDENALRAKVDEAMGVYQ 737
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 207/534 (38%), Positives = 293/534 (54%), Gaps = 58/534 (10%)
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAA 188
VA E G SKG+GFV FET++SA +IE +NG + K+++VGRF+ ++DR L A
Sbjct: 435 VAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQQAK 494
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
YTN+++KN+D +V E+ L E F K+G I S + ++G+SRGFGFV F++P +A +A+
Sbjct: 495 LYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAV 554
Query: 249 EAMNGSVI-GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
++G K Y RAQKK ER+Q L+ +FE+ + ERI +Y+G N+YVKN+DD + D
Sbjct: 555 TELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDD 614
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E L+ FS GTI SAKVM D+ G +KGFGFV FSSPEEA+KAV +G ++ KPLYV
Sbjct: 615 ERLRREFSAFGTIKSAKVMMDD-GRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVT 673
Query: 368 IAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-----PSGY-----PSLYYTTPPGIVSQV 417
+AQRK+DR+AHL QY+Q + S I +GY P Y P ++Q+
Sbjct: 674 LAQRKKDRKAHLDSQYSQRNTNMRMQSIGPIYQPGASNGYFVPTIPQPQYFYGPTQMTQI 733
Query: 418 PPRPGLMYQPLGLRTGWRANGFVPPTRPAFQV--------SPLPVNPKHNRQNRGRMNGN 469
+P +Q +R G P P +P+P + ++ N
Sbjct: 734 RSQPRWAFQS-QVRAGTPQTA--APGYPNMATQHQNIGARAPVPAGQQAALARNVMVDTN 790
Query: 470 MLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGR-------------------IR 510
P A + SA S + G KY PN R +
Sbjct: 791 ARPISTAQQKMPGAVSAGSVHVPGARDTGSGYKYTPNMRNPLSQDQGIGQAQPGQAQGMG 850
Query: 511 ELNKGSGVSLGTFNSG---GVMARKPD-----------MLNGMLAAPSPEQQKQILGERL 556
+ G +G SG G+ +PD + MLA PE QKQ+LGERL
Sbjct: 851 QSQPGQAQGMGQAQSGQAQGMEQVQPDKAAVHVYGQEPLTATMLATAKPEDQKQMLGERL 910
Query: 557 YPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+PL+E+ P+L KITGMLLE+DNS+LL +LE ESL +VE+AV +L+ +A+
Sbjct: 911 FPLIERMYPELTGKITGMLLEIDNSDLLHMLEHHESLKNQVEKAVAMLQAHQAQ 964
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 149/272 (54%), Gaps = 20/272 (7%)
Query: 31 AFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS-WSC 89
++ +LA V TG S YG+V+F + A ++IE N L+GK + + +
Sbjct: 422 CYAHCLNLALVDSVAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVG 481
Query: 90 RDPDARKSG-----VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGF 144
R+ ++ G N+++KN+ E+++ L EMF+ +G I SCKV +DG S+G GF
Sbjct: 482 RNDREKELGQQAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGF 541
Query: 145 VQFETEESANAAIENLNGTTVGD-KRIYVGRFIKKSDRV--LPSPAAKY----------T 191
V FE + A A+ L+G + K YV R KK++R L +Y
Sbjct: 542 VAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGV 601
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KNLD + +E L +FS FG I S + D+ G S+GFGFV F +P++A +A+ M
Sbjct: 602 NLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMDD-GRSKGFGFVYFSSPEEATKAVTDM 660
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
NG ++G+K LY AQ+K +R+ L Q+ ++
Sbjct: 661 NGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQR 692
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 102/194 (52%), Gaps = 33/194 (17%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVC-KDSTTGRSTCYGYVNFLSPHDAIRAI 70
++Y+ ++ +V + ELF+ F ++ ++ S +V KD G S +G+V F P +A +A+
Sbjct: 497 TNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDD--GSSRGFGFVAFEDPKEAEKAV 554
Query: 71 EVKNHTQLH------GKMLRISWSCRDPDA-----------------RKSGVANLFVKNL 107
T+LH GK ++ + + + R GV NL+VKNL
Sbjct: 555 -----TELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGV-NLYVKNL 608
Query: 108 IESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD 167
++ID+ RL+ F FG I S KV +DG+SKG GFV F + E A A+ ++NG VG
Sbjct: 609 DDTIDDERLRREFSAFGTIKSAKVMM-DDGRSKGFGFVYFSSPEEATKAVTDMNGRIVGT 667
Query: 168 KRIYVGRFIKKSDR 181
K +YV +K DR
Sbjct: 668 KPLYVTLAQRKKDR 681
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/377 (45%), Positives = 249/377 (66%), Gaps = 6/377 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
SLYVGDL PDVT+ +L D FS + SV +C++S TG+S CY Y+NF SP A A+
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 72 VKNHTQLHGKMLRISWSCRDPDARK---SGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
NH+ L GK +RI WS RD R+ +G ANL+VKNL SI + L+ MF FG+I+S
Sbjct: 81 RLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILS 140
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
CKV E+G+SKG GFVQF+TE+SA +A L+G+ V K+++V +FI K +R +
Sbjct: 141 CKV-VEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQ 199
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
TN+++KNL VT++ L FS++G ++S+++ RD G SRGFGFVNF NP++A++A+
Sbjct: 200 DSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAM 259
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
E++ G +GSK L+ +A KK ER ++L+ +F + + + SN+YVKN+ + + +
Sbjct: 260 ESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKP-NMRWSNLYVKNLSESMNET 318
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F G I SAKVM E G +KGFGFVCFS+ EE+ +A +G+++ KP+ V +
Sbjct: 319 RLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRV 378
Query: 369 AQRKEDRQAHLQLQYAQ 385
A+RKEDR LQ QY Q
Sbjct: 379 AERKEDRIKRLQ-QYFQ 394
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 160/290 (55%), Gaps = 17/290 (5%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T T A+LYV +L +T L F F S+ S +V +++ G+S +G+V F + A
Sbjct: 107 TRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSA 164
Query: 67 IRAIEVKNHTQLHGKMLRIS-WSCRDPDARKSG---VANLFVKNLIESIDNVRLQEMFQN 122
+ A + + ++GK L ++ + +D A +G N++VKNLIE++ + L +F
Sbjct: 165 VSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQ 224
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK---- 178
+G + S V G+S+G GFV F E+A A+E+L G +G K+++VG+ +KK
Sbjct: 225 YGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERR 284
Query: 179 -------SDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSR 231
SD + P +++NL++KNL + E L E F +G+I S + ENG S+
Sbjct: 285 EMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSK 344
Query: 232 GFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE 281
GFGFV F N +++++A +NG ++ K + A++K +R + L+ F+
Sbjct: 345 GFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQ 394
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 154/295 (52%), Gaps = 21/295 (7%)
Query: 97 SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEESANA 155
S +L+V +L + L + F ++S + S GKS + ++ F++ SA+
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 156 AIENLNGTTVGDKRIYVGRFIKKSDRVLP---SPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
A+ LN + + K + I S R L + NL++KNLDS +T L F
Sbjct: 78 AMTRLNHSDLKGKAMR----IMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFC 133
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FG I S + +ENG S+GFGFV FD A A A++GS++ K L+ A+ K ER
Sbjct: 134 PFGSILSCKVV-EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDER 192
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
+ +Q +NVYVKN+ + VTD+ L FSQ GT++S VMRD G
Sbjct: 193 AAMAGNQ------------DSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGR 240
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHM 387
++GFGFV F +PE A KA+ + G L K L+V A +K++R+ L+ +++ +
Sbjct: 241 SRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNF 295
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 15/192 (7%)
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDAR 245
++++ +L++ +L DVTE+ L++KFS + S+ + R+ G S + ++NFD+P A
Sbjct: 17 SSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSAS 76
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
A+ +N S + K + +Q+ + R F +N+YVKN+D +
Sbjct: 77 NAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGF-------------ANLYVKNLDSSI 123
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
T L+ F G+I S KV+ +E G +KGFGFV F + + A A + HG M++ K L+
Sbjct: 124 TSSCLERMFCPFGSILSCKVV-EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLF 182
Query: 366 VAIAQRKEDRQA 377
VA K++R A
Sbjct: 183 VAKFINKDERAA 194
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 183/434 (42%), Positives = 259/434 (59%), Gaps = 27/434 (6%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
M V P+ ASLYVGDLHP+ T+ L+D FS+ + S+RVC+D T RS Y YVNF
Sbjct: 1 MTTVAPSYPM-ASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNF 59
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
P DA RAI+ N QL + S +++ + + + F
Sbjct: 60 QRPEDAERAIDTMNFIQLSVNL-------------ASAISSSKTWTRLSTTKCCTIP--F 104
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
FGNI+SCKV + G+SKG+GFV FETEE+A AIE L+G + DK+++VGRF + +
Sbjct: 105 SAFGNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGE 164
Query: 181 RV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
RV A ++TN+F+KNL ++ + L E F + G + S+ +A DENG SR FGFV+F
Sbjct: 165 RVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSF 224
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
+ + A + +E ++ K ++ RAQKKAER+ L+ +FE+ + ER +Y+G N+YV
Sbjct: 225 ETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYV 284
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRD---EKGINKGFGFVCFSSPEEASKAVNTFH 355
KN+DD +TD+ L+ HF+ G ITS+KVM D E +KGFGFVCF+S EEA+KAV +
Sbjct: 285 KNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMN 344
Query: 356 GYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSL--YYTTPPGI 413
G ++ KPLYVA+AQRK++R+AHLQ QY Q + G P+ P Y PP
Sbjct: 345 GRIIASKPLYVALAQRKDERKAHLQQQYMQRVT--TGMRLQAFPTNQPQYGNLYMPPP-- 400
Query: 414 VSQVPPRPGLMYQP 427
+ Q P R + P
Sbjct: 401 IQQHPFRMSIRPTP 414
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLES---PESLAV 595
+LAA P++QKQ+LGERLYP + + P+L KITGMLLE++NSELL +L++ P L
Sbjct: 536 ILAAAPPQEQKQLLGERLYPSIRQLYPELCGKITGMLLEIENSELLAMLDTKSNPGLLQE 595
Query: 596 KVEEAVQVL 604
KV+EAV VL
Sbjct: 596 KVQEAVTVL 604
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 325 bits (832), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 162/362 (44%), Positives = 245/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL PDVT+ LF FS ++ S+R+C+D T S Y YVNFL DA RA++
Sbjct: 10 ASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +R+ WS RD RKSG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 70 TMNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ G S+G+GFV F+ + +A+ AIE +NG + D R++VG F + DR L + A++
Sbjct: 130 MCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQNKASE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L E FS +GKI S+ + D +G S+GFGFV+FD + A+RA++
Sbjct: 189 FTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAKRAVD 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG I + ++ RAQKKAER+ L+ FE++++ER + +G+ +YVKN+D+ + +E+
Sbjct: 249 IVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRGTKIYVKNLDETIDEEK 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I KVM++E G ++GFG +CFSSPEEA++A+ +G +L KP+ +A+A
Sbjct: 309 LRKAFSSFGSIIRVKVMQEE-GRSRGFGLICFSSPEEAARAMAEMNGRLLGSKPVNIALA 367
Query: 370 QR 371
QR
Sbjct: 368 QR 369
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 155/303 (51%), Gaps = 29/303 (9%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFET 149
D DA K A+L+V +L + L F G ++S ++ + S G+ +V F
Sbjct: 2 DVDA-KYRQASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLH 60
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVT 203
A A++ +N + + I R++ S Y N+F+KNLD +
Sbjct: 61 VADAQRALDTMNFDVIQGQSI----------RLMWSQRDAYLRKSGIGNVFIKNLDKSID 110
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYA 263
+ L E FS FGKI S + D+ G SRG+GFV+F N A RA+E MNG ++ L+
Sbjct: 111 NKTLYEHFSVFGKILSSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFV 169
Query: 264 ARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSA 323
+ + +RE L+++ E +N+Y+KN D++ DE+LK FS G I S
Sbjct: 170 GPFKNRRDREAELQNKASE----------FTNIYIKNFGDEMDDEKLKEFFSHYGKIVSV 219
Query: 324 KVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
KVM D G +KGFGFV F + E A +AV+ +G + + ++V AQ+K +RQA L+ +
Sbjct: 220 KVMTDSSGKSKGFGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLF 279
Query: 384 AQH 386
Q
Sbjct: 280 EQR 282
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 324 bits (831), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 221/332 (66%), Gaps = 9/332 (2%)
Query: 6 PTATTP-------ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYV 58
PT+ P ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YV
Sbjct: 43 PTSAAPSNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYV 102
Query: 59 NFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQE 118
N+ S +D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 103 NYNSANDGERALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHD 162
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178
F FGNI+SCKVA E G SKG+GFV +ET E+AN+AI+++NG + +K+++VG I K
Sbjct: 163 TFAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPK 222
Query: 179 SDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
DR+ A +TN+++KN+D + T++ F K+G I S +A D+ G SRGFGFV
Sbjct: 223 KDRMSKFEEMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFV 282
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
N+ +DA +A+E +N S + LY RAQKK ERE+ LR Q+E +R+E+ KY+G N+
Sbjct: 283 NYIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNL 342
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRD 328
YVKN+ D++ D+EL+ F G ITSAKVMRD
Sbjct: 343 YVKNLADEIDDDELRKIFEPYGAITSAKVMRD 374
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 160/290 (55%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F + G + S C+ A + +S G+ +V + + A
Sbjct: 56 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNSANDGERA 113
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + K I S R PA + T N+F+KNLD + + L + F+
Sbjct: 114 LEELNYTLIKGKPCR----IMWSQR---DPALRKTGQGNVFIKNLDGAIDNKALHDTFAA 166
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE+G S+G+GFV+++ + A A++++NG ++ K ++ K +R
Sbjct: 167 FGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDR- 225
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +N+YVKNID + TD+E +A F + G ITSA + D++G +
Sbjct: 226 ---MSKFEE------MKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKS 276
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV + E+A+KAV + + LYV AQ+K +R+ L+ QY
Sbjct: 277 RGFGFVNYIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEELRKQY 326
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 136/294 (46%), Gaps = 50/294 (17%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++YV ++ P+ TD E F ++ + S + D G+S +G+VN++ DA +A+E
Sbjct: 238 NIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQE-GKSRGFGFVNYIRHEDANKAVEE 296
Query: 73 KNHTQLHGKMLRISWSC----RDPDARKSGVA------------NLFVKNLIESIDNVRL 116
N++ G+ L + + R+ + RK A NL+VKNL + ID+ L
Sbjct: 297 LNNSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDEL 356
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
+++F+ +G I S KV + T D+ +
Sbjct: 357 RKIFEPYGAITSAKV----------------------------MRDTIPADEVAASKKDE 388
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN--GTSRGFG 234
+KSD S + + KN + + +E VE K K+ ++ I ++ G S+GFG
Sbjct: 389 EKSDEEKQSDDEEKKDEGDKNEEGE-KKEGDVEDVIK--KLDTITIGGEKKILGKSKGFG 445
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
FV F NPD+A +A+ +N +I K LY A AQ+K R+ L + + + R+
Sbjct: 446 FVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLEASIQARNQVRM 499
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
+N + AP P QQKQ+LGE LYP + +P+L KITGMLLEMDN EL+ L +L
Sbjct: 680 INALGQAP-PSQQKQMLGEALYPKIHAQQPELAGKITGMLLEMDNEELIGLTGDDNALRE 738
Query: 596 KVEEAVQV 603
KV+EA+ V
Sbjct: 739 KVQEALNV 746
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 158/325 (48%), Positives = 223/325 (68%), Gaps = 4/325 (1%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKV E+G SKG+GFV FET E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + A ++TN+++KN D+ +E L E F K+G S+ + D++G S+GFGFV+F+
Sbjct: 182 EMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA+RA++ MNG + K +Y RAQKK ER+ L+ +FE+ +++R+ +Y+G N+YVKN+
Sbjct: 242 EDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVM 326
DD + DE L+ FS GTITSAKVM
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVM 326
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 159/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE + + +E +NVY+KN +D+ DE+LK F + G S +VM D+
Sbjct: 177 KEREAEMGARAKE----------FTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A +AV+ +G ++ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQ 282
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 186/440 (42%), Positives = 259/440 (58%), Gaps = 64/440 (14%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P + T ASLYVGDL P+V +G L++ F+ +AS+RVC+D+ T RS Y YVN+ D
Sbjct: 7 PNSFTSASLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQAAD 66
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++ N T + GK RI WS RDP R+SGV N+FVKNL E IDN +L + F FGN
Sbjct: 67 AERALDSMNFTDIKGKPCRIMWSQRDPSVRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGN 126
Query: 126 IISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP 184
I+SCKV E G SKG+G+V +ET E+A +AI+ L+G + K + VG F+++ R P
Sbjct: 127 ILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVFMRRDTR--P 184
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI-----------------ARDEN 227
YTNLF+KN+ + ++ L +F++FG+I S + +DE+
Sbjct: 185 DQEV-YTNLFIKNMPYEWDDKRLEAEFAEFGEIVSASVKMGKRKKFAKKGKKAEAKKDED 243
Query: 228 GTSRG----------------------------------FGFVNFDNPDDARRALEAMNG 253
G FGFVNF + A A+EAMN
Sbjct: 244 DKEDGAEDKPAEEEKPEEEEAKPAEEEAKPESTEPESLGFGFVNFATHEAAAAAVEAMND 303
Query: 254 SVIG--------SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
V K L+ RAQKK+ER+ LR ++E ++ ERI K++G N+YVKN+DD V
Sbjct: 304 KVYKVTEDGDEVEKALFVGRAQKKSERQAELRSKYEAEKMERIAKFQGVNLYVKNLDDAV 363
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGIN-KGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
TD+ L+ F GTITSAK+MRD K N +GFGFVCFS+PE+A++AVN G ++ KP+
Sbjct: 364 TDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNEMSGKIVAGKPI 423
Query: 365 YVAIAQRKEDRQAHLQLQYA 384
YV++AQR+E R+A L+ Q+A
Sbjct: 424 YVSLAQRREVRRAQLEAQHA 443
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 55/65 (84%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
LA+ +PE QK ++GERLYPL+ + +PDL KITGMLLEMDNSELL LLESPE+L K++E
Sbjct: 618 LASATPEIQKNMIGERLYPLIHQTQPDLAGKITGMLLEMDNSELLHLLESPEALGAKIQE 677
Query: 600 AVQVL 604
A+QVL
Sbjct: 678 ALQVL 682
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 227/339 (66%), Gaps = 10/339 (2%)
Query: 6 PTATTP-------ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYV 58
PT+ P ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YV
Sbjct: 48 PTSAAPSTAHPNSASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYV 107
Query: 59 NFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQE 118
N+ S +D RA+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 108 NYNSANDGERALEELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHD 167
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178
F FGNI+SCKVA E G SKG+GFV +ET E+A+ AI+++NG + +K+++VG I K
Sbjct: 168 TFAAFGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPK 227
Query: 179 SDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGF 235
DR+ A +TN+++KN++++VT++ E F K+G+I S +A D E G SRGFGF
Sbjct: 228 KDRMSKFEEMKANFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGF 287
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN 295
VN+ N +DA +A++ +N S + LY RAQKK ERE+ LR Q+E R+E+ KY+G N
Sbjct: 288 VNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVN 347
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK 334
+YVKN+ D+V DEEL+ F G ITSAKVMRD ++K
Sbjct: 348 LYVKNLADEVDDEELRKIFEAYGAITSAKVMRDVTPLDK 386
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 160/291 (54%), Gaps = 26/291 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F + G + S C+ A + +S G+ +V + + A
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTR--RSLGYAYVNYNSANDGERA 118
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + + I S R PA + T N+F+KNLD + + L + F+
Sbjct: 119 LEELNYTLIKGRPCR----IMWSQR---DPALRKTGHGNVFIKNLDGAIDNKALHDTFAA 171
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A DE G S+G+GFV+++ + A +A++++NG ++ K ++ K +R
Sbjct: 172 FGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDR- 230
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGI 332
+FEE +K +N+YVKNI+ +VTD+E + F + G ITSA + D E G
Sbjct: 231 ---MSKFEE------MKANFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGK 281
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
++GFGFV + + E+A KAV+ + H + LYV AQ+K +R+ L+ QY
Sbjct: 282 SRGFGFVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHEREEELRKQY 332
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 157/355 (44%), Gaps = 76/355 (21%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++++ +L + + L D F+ F ++ S +V D G S YG+V++ + A +
Sbjct: 146 TGHGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAVDEL-GNSKGYGFVHYETAEAASQ 204
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPD------ARKSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + D K+ N++VKN+ + + +E+F+
Sbjct: 205 AIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIETEVTDDEFRELFEK 264
Query: 123 FGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+G I S +A +E GKS+G GFV + E A A++ LN + +++YVGR KK +R
Sbjct: 265 YGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHER 324
Query: 182 ----------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD---- 225
+AKY NL++KNL +V +E L + F +G I S + RD
Sbjct: 325 EEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELRKIFEAYGAITSAKVMRDVTPL 384
Query: 226 --------ENGT--------------------------------------------SRGF 233
EN T S+GF
Sbjct: 385 DKAETDAKENKTDDKEKQVDGEPTEDKNGEEQEDMEELEKKMDTVTIGGEKKVLGKSKGF 444
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
GFV F NPD+A +A+ +N +I K LY A AQ+K R+ L + + + R+
Sbjct: 445 GFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKTQLEASIQARNQVRM 499
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 23/237 (9%)
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTE 204
++A+ E NG + + +D P+ AA T +L++ LD VTE
Sbjct: 15 QAASPPAEGANGAPTLNTNTAASMSSEYNDMPTPTSAAPSTAHPNSASLYVGELDPSVTE 74
Query: 205 EHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYA 263
L E FS G++AS+ + RD S G+ +VN+++ +D RALE +N ++I +
Sbjct: 75 AMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEELNYTLIKGRPCRI 134
Query: 264 ARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSA 323
+Q R+ LR K NV++KN+D + ++ L F+ G I S
Sbjct: 135 MWSQ----RDPALR------------KTGHGNVFIKNLDGAIDNKALHDTFAAFGNILSC 178
Query: 324 KVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
KV DE G +KG+GFV + + E AS+A+ + +G +L+ K ++V K+DR + +
Sbjct: 179 KVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFE 235
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
LN + AAP P QQKQILGE LYP + +P+L KITGMLLEMDN ELL L ++L
Sbjct: 694 LNQLNAAP-PSQQKQILGEALYPKIHAQQPELAGKITGMLLEMDNHELLGLTTDDDALRA 752
Query: 596 KVEEAVQV 603
KV+EA+ V
Sbjct: 753 KVDEAMNV 760
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 157/319 (49%), Positives = 217/319 (68%), Gaps = 2/319 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D +A+E
Sbjct: 62 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALE 121
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 122 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 181
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET+E+A+ AI+++NG + +K+++VG I K DR A
Sbjct: 182 AQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKAN 241
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+ +D T++ E F KFG + S +ARDE G +RGFGFVNF N + A A++
Sbjct: 242 FTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEHASAAVD 301
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG + LY RAQKK ERE+ LR +E R E+ KY+G N+YVKN++DDV DE+
Sbjct: 302 ELNGKDFMGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLEDDVDDEK 361
Query: 310 LKAHFSQCGTITSAKVMRD 328
L+ F+ G ITSAKVMRD
Sbjct: 362 LRELFAPYGAITSAKVMRD 380
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 159/290 (54%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F G++ S C+ A + +S G+ +V + T A
Sbjct: 62 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNTTIDGEKA 119
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + + I S R PA + T N+F+KNLD + + L + F+
Sbjct: 120 LEELNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 172
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE+G S+G+GFV+++ + A +A++ +NG ++ K ++ K +R+
Sbjct: 173 FGNILSCKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQ 232
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +N+YVKNI D TD++ + F + G +TSA + RDE G N
Sbjct: 233 ----SKFEE------MKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKN 282
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV F + E AS AV+ +G + LYV AQ+K +R+ L+ Y
Sbjct: 283 RGFGFVNFINHEHASAAVDELNGKDFMGQDLYVGRAQKKHEREEELRKSY 332
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L L P QQKQ+LGE L+P ++ +P+L KITGMLLEMDN+EL+ L+E SL
Sbjct: 707 LQAQLTTAPPAQQKQLLGEALFPKIQVMQPELAGKITGMLLEMDNAELVGLIEDESSLRA 766
Query: 596 KVEEAVQV 603
KV+EA+ V
Sbjct: 767 KVDEALTV 774
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 11/125 (8%)
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQHMA 388
G +KGFGFVCF++P+EA+KAV + M++ KPLYVA+AQRK+ R++ L+ +Q +
Sbjct: 447 GKSKGFGFVCFNNPDEATKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNQIR 506
Query: 389 GIEGSSANVIPSGY---PSLYYT-TPPGIVSQVPPRPGLMYQPLGLRTGWR--ANGFVPP 442
+ ++A +P + P Y PG +PP G P L+ G A G P
Sbjct: 507 MQQAAAAAGLPQQFIQAPMFYGPGQQPGF---MPPNAGGRGMPFPLQQGMGIPAQGARPG 563
Query: 443 TRPAF 447
P F
Sbjct: 564 QYPNF 568
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 228 GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKER 287
G S+GFGFV F+NPD+A +A+ MN ++ K LY A AQ+K R+ L + + + R
Sbjct: 447 GKSKGFGFVCFNNPDEATKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNQIR 506
Query: 288 I 288
+
Sbjct: 507 M 507
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/420 (41%), Positives = 244/420 (58%), Gaps = 51/420 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY GDL PDVT+ L++ F+ +AS+RVC+DS T +S Y Y+NF + DA RA++
Sbjct: 48 ASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ + G+ R+ WS RDP R+SG N++VKNL +IDN L + F FGNI+SCKV
Sbjct: 108 TLNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKV 167
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A + DGKS+G GFV FE++ESA AAI LNG +G+K +YV F K ++R +P +T
Sbjct: 168 ALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTP-KNFT 226
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++K++ + EE + E+F FG+I SL + D G R F FVN+ + AR A+E M
Sbjct: 227 NVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEM 284
Query: 252 NGSVI-----------------------------------------------GSKVLYAA 264
+G + + LY A
Sbjct: 285 DGKDVRNEEEKAADRAQREREREERKAAREAAKAEGREDGDDVESDDDDEEPETSHLYVA 344
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGS-NVYVKNIDDDVTDEELKAHFSQCGTITSA 323
RAQ KAER +L+ QF R + G N+YVKN+ +DV D ELK F GT+TS
Sbjct: 345 RAQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMFEPFGTVTSV 404
Query: 324 KVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
KVM D+KG+++GFGFVCFS+ EEA+KAV H ++ KPLYV + +++E R LQ +Y
Sbjct: 405 KVMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 464
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRA 247
++ +L+ +L DVTE L E F+ G +AS+ + RD S G+ ++NF N DA RA
Sbjct: 46 QFASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERA 105
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
L+ +N S I + + R+ LR + NVYVKN+D ++ +
Sbjct: 106 LDTLNYSPIKGRPCRLMWSH----RDPALR------------RSGAGNVYVKNLDRNIDN 149
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
+ L FS G I S KV G ++GFGFV F S E A A+ +G + K +YVA
Sbjct: 150 KALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 209
Query: 368 IAQRKEDR 375
++ +R
Sbjct: 210 PFKKTAER 217
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 45/57 (78%)
Query: 548 QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
QKQ+LGE+LY +++ +P L KITGM+LEMDNSELL+LLES L KV+EA+ VL
Sbjct: 657 QKQMLGEQLYTQIQRIQPQLAGKITGMMLEMDNSELLILLESESQLRAKVDEALMVL 713
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/420 (41%), Positives = 244/420 (58%), Gaps = 51/420 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY GDL PDVT+ L++ F+ +AS+RVC+DS T +S Y Y+NF + DA RA++
Sbjct: 48 ASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ + G+ R+ WS RDP R+SG N++VKNL +IDN L + F FGNI+SCKV
Sbjct: 108 TLNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKV 167
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A + DGKS+G GFV FE++ESA AAI LNG +G+K +YV F K ++R +P +T
Sbjct: 168 ALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTP-KNFT 226
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++K++ + EE + E+F FG+I SL + D G R F FVN+ + AR A+E M
Sbjct: 227 NVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEM 284
Query: 252 NGSVI-----------------------------------------------GSKVLYAA 264
+G + + LY A
Sbjct: 285 DGKDVRNEEEKAADRAQREREREERKAAREAAKAEGREEGDDVESDDDDEEPETSHLYVA 344
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGS-NVYVKNIDDDVTDEELKAHFSQCGTITSA 323
RAQ KAER +L+ QF R + G N+YVKN+ +DV D ELK F GT+TS
Sbjct: 345 RAQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMFEPFGTVTSV 404
Query: 324 KVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
KVM D+KG+++GFGFVCFS+ EEA+KAV H ++ KPLYV + +++E R LQ +Y
Sbjct: 405 KVMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 464
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRA 247
++ +L+ +L DVTE L E F+ G +AS+ + RD S G+ ++NF N DA RA
Sbjct: 46 QFASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERA 105
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
L+ +N S I + + R+ LR + NVYVKN+D ++ +
Sbjct: 106 LDTLNYSPIKGRPCRLMWSH----RDPALR------------RSGAGNVYVKNLDRNIDN 149
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
+ L FS G I S KV G ++GFGFV F S E A A+ +G + K +YVA
Sbjct: 150 KALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 209
Query: 368 IAQRKEDR 375
++ +R
Sbjct: 210 PFKKTAER 217
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 45/57 (78%)
Query: 548 QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
QKQ+LGE+LY +++ +P L KITGM+LEMDNSELL+LLES L KV+EA+ VL
Sbjct: 656 QKQMLGEQLYTQIQRIQPQLAGKITGMMLEMDNSELLILLESESQLRAKVDEALMVL 712
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/326 (48%), Positives = 222/326 (68%), Gaps = 3/326 (0%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D
Sbjct: 55 PHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTAD 114
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 115 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 174
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E+G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR
Sbjct: 175 ILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 234
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPD 242
A +TN+++KN++ +VT++ F K+G + S +ARD E G SRGFGFVNF + +
Sbjct: 235 DEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
DA +A++ +N + LY RAQKK ERE+ LR +E R+E+ KY+G N+Y+KN+D
Sbjct: 295 DASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLD 354
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRD 328
D+V DE+L+ FS+ G ITSAKVMRD
Sbjct: 355 DEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 163/291 (56%), Gaps = 26/291 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F G++ S C+ A + +S G+ +V + T A
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNTTADGEKA 118
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + + I S R PA + T N+F+KNLD + + L + F+
Sbjct: 119 LEELNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 171
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DENG S+G+GFV+++ + A +A++ +NG ++ K +Y K +R+
Sbjct: 172 FGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ 231
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGI 332
+F+E +K +N+YVKNI+ +VTD+E + F + G +TS+ + RD E G
Sbjct: 232 ----SKFDE------MKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGK 281
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
++GFGFV F+S E+ASKAV + H + LYV AQ+K +R+ L+ Y
Sbjct: 282 SRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSY 332
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 160/346 (46%), Gaps = 67/346 (19%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++++ +L + + L D F+ F ++ S +V +D G S YG+V++ + A +
Sbjct: 146 TGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQ 204
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDAR------KSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + D + K+ N++VKN+ + + + +F+
Sbjct: 205 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEK 264
Query: 123 FGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+G++ S +A E GKS+G GFV F + E A+ A++ LN + +YVGR KK +R
Sbjct: 265 YGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHER 324
Query: 182 ----------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD---- 225
A+KY NL++KNLD +V +E L + FS+FG I S + RD
Sbjct: 325 EEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITE 384
Query: 226 ------------------------ENGTSR-------------------GFGFVNFDNPD 242
E S+ GFGFV F NPD
Sbjct: 385 PGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPD 444
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
DA +A+ MN ++ +K LY A AQ+K R+ L + + + R+
Sbjct: 445 DATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQARNQLRM 490
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 18/197 (9%)
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPD 242
P P A +L++ LD VTE L E FS+ G +AS+ + RD S G+ +VN++
Sbjct: 55 PHPQAS-ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTA 113
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
D +ALE +N ++I + +Q R+ LR K NV++KN+D
Sbjct: 114 DGEKALEELNYTLIKGRPCRIMWSQ----RDPALR------------KTGQGNVFIKNLD 157
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ ++ L F+ G I S KV +DE G +KG+GFV + + E AS+A+ +G +L+ K
Sbjct: 158 VAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEK 217
Query: 363 PLYVAIAQRKEDRQAHL 379
+YV K+DRQ+
Sbjct: 218 KVYVGHHIPKKDRQSKF 234
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 536 LNGMLAA--PSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
L G LAA +P QQKQILGE ++P ++ P+L KITGMLLEMDN+EL+ L+E+ +L
Sbjct: 666 LQGQLAAVADNPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGAL 725
Query: 594 AVKVEEAVQV 603
KV+EA+ V
Sbjct: 726 RSKVDEALAV 735
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 156/318 (49%), Positives = 220/318 (69%), Gaps = 3/318 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L E FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMR 327
L+ FS G ITSAK R
Sbjct: 310 LRKEFSPYGVITSAKKRR 327
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 154/288 (53%), Gaps = 16/288 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I I S R + N+F+KNL+ + + L + FS FG I
Sbjct: 70 DTMNFEMLKGQPIR----IMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE+G SRGFGFV+F+ + A++A+ MNG ++ + ++ + + ERE L
Sbjct: 126 LSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAEL- 183
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
R L++ +N+YVKN+ DV ++ L+ FSQ G + S KVMRD G ++ FG
Sbjct: 184 -------GARALEF--TNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F EEA KAV +G + + LY AQ++ +RQ L+ ++ Q
Sbjct: 235 FVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 160/363 (44%), Positives = 238/363 (65%), Gaps = 4/363 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D T+ LF FS + S+R+C+D T R Y YVNFL P DA +A++
Sbjct: 122 ASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQKALD 181
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSGV N+ +KNL S+DN L E F FG I+S KV
Sbjct: 182 TMNFDAVEGKPIRLMWSQRDACLRKSGVGNVIIKNLDRSVDNKTLYEHFSGFGRILSSKV 241
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
S+D SKG+ FV F+++ +A+ AI+ +NG + D+++ V F + DR L + ++
Sbjct: 242 -MSDDQGSKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDREAELRTRTSE 300
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L FSK+G+ S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 301 FTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 360
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FEE +++ + +G +Y+KN+DD V D+
Sbjct: 361 EMNGKDINGQLVFVGRAQKKEERQAELKQVFEELKRDGARRCQGVKLYIKNLDDTVDDDR 420
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM +E+G KGFG VCFSSPEEA+KA+ +G +L KPL +A+A
Sbjct: 421 LRRAFSSFGSISRVKVM-EEEGQRKGFGLVCFSSPEEAAKAMTQMNGRVLGSKPLNIALA 479
Query: 370 QRK 372
+R+
Sbjct: 480 KRQ 482
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 146/288 (50%), Gaps = 16/288 (5%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEES 152
A K +A+L+V +L L F G ++S ++ + G+ +V F
Sbjct: 116 AAKYRLASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPAD 175
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
A A++ +N V K I + + D L N+ +KNLD V + L E FS
Sbjct: 176 AQKALDTMNFDAVEGKPIRL--MWSQRDACLRKSGV--GNVIIKNLDRSVDNKTLYEHFS 231
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FG+I S + D+ G S+G+ FV+F + A A++ MNG VI + + A + + +R
Sbjct: 232 GFGRILSSKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDR 290
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
E LR + E +NVYVKN +D+ DE L+ FS+ G S KVM D G
Sbjct: 291 EAELRTRTSE----------FTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGK 340
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
+KGFGFV F S E A KAV +G ++ + ++V AQ+KE+RQA L+
Sbjct: 341 SKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELK 388
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 318 bits (814), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 165/367 (44%), Positives = 242/367 (65%), Gaps = 9/367 (2%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+ + RS Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSI-----TCHPRSLGYAYVNFLQLADAQKALD 64
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL SIDN L E F FG I+S KV
Sbjct: 65 TMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKV 124
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
S+D S+G+ FV F+ + +A+ AIE +NGT + D R++VGRF + DR + A +
Sbjct: 125 -MSDDHGSRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEFQNKAHE 183
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN ++ +E L E FSK+GK S+ + D +G S+GFGFV+FD+ + A+RA+E
Sbjct: 184 FTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVE 243
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++L+ RAQKKAER+ L+ FE+ + ER + +G+ +Y+KN+D+ + DE+
Sbjct: 244 EMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCRGAKLYIKNLDETIDDEK 303
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSS EEA+KA+ +G +L KPL +A+A
Sbjct: 304 LRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALA 362
Query: 370 QRKEDRQ 376
Q+ +R+
Sbjct: 363 QKPXERK 369
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 151/292 (51%), Gaps = 31/292 (10%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
A+L+V +L + L + F G ++S +S G+ +V F A A++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSITCHP----RSLGYAYVNFLQLADAQKALDT 65
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEHLVEKFSK 213
+N + K I R++ S Y N+F+KNLD + + L E FS
Sbjct: 66 MNFDLIKGKSI----------RLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSA 115
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FGKI S + D++G SRG+ FV+F N A RA+E MNG+++ L+ R + + +RE
Sbjct: 116 FGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDRE 174
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+F+ K E +NVY+KN D++ DE LK FS+ G S KVM D G +
Sbjct: 175 A----EFQNKAHE------FTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKS 224
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
KGFGFV F S E A +AV +G ++ + L+V AQ+K +RQA L+ + Q
Sbjct: 225 KGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQ 276
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 155/318 (48%), Positives = 220/318 (69%), Gaps = 3/318 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMR 327
L+ FS G ITSAK R
Sbjct: 310 LRKEFSPYGVITSAKKRR 327
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 154/288 (53%), Gaps = 16/288 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I I S R + N+F+KNL+ + + L + FS FG I
Sbjct: 70 DTMNFEMLKGQPIR----IMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE+G SRGFGFV+F+ + A++A+ MNG ++ + ++ + + ERE L
Sbjct: 126 LSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAEL- 183
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
R L++ +N+YVKN+ DV ++ L+ FSQ G + S KVMRD G ++ FG
Sbjct: 184 -------GARALEF--TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
FV F EEA KAV +G + + LY AQ++ +RQ L+ ++ Q
Sbjct: 235 FVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 161/367 (43%), Positives = 240/367 (65%), Gaps = 4/367 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL +VT+ LF FS + S+R+C+D T RS Y YVNFL DA RA++
Sbjct: 148 ASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLADAQRALD 207
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ LR+ WS RD RKSGV N+F+KNL S+D+ L E F FG I+S KV
Sbjct: 208 TMNFDVLRGRPLRLMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGKILSSKV 267
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ E G S+G+ FV F+ + +A+ AIE++NG + R++VGRF + R L S A +
Sbjct: 268 VSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAELRSRAGE 326
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TNL++KN + + L FS++GK S+ + D +G SRGFGFV+F++ + ARRA+E
Sbjct: 327 FTNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFVSFESHEAARRAVE 386
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
A+NG + + L+ RAQ+KAER+ LR FE+++++ + + +G+ +YVKN+DD V ++
Sbjct: 387 ALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQDGLRRAQGAKLYVKNLDDAVDEDR 446
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ++ K+MR+E G +KGFG +CFSS +EA++A+ +G +L KPL +A+A
Sbjct: 447 LRREFSGFGAVSRVKIMREE-GRSKGFGLICFSSADEAARALAEMNGRVLGSKPLSIALA 505
Query: 370 QRKEDRQ 376
Q + Q
Sbjct: 506 QSRRCLQ 512
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 146/288 (50%), Gaps = 16/288 (5%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158
A+L+V +L + L F G ++S ++ +S G+ +V F A A++
Sbjct: 148 ASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLADAQRALD 207
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
+N + + + + S R + N+F+KNLD V ++ L E+FS FGKI
Sbjct: 208 TMNFDVLRGRPLR----LMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGKIL 263
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S + DE G SRG+ FV+F A RA+E MNG+ + L+ R Q + RE LR
Sbjct: 264 SSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAELRS 322
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
+ E +N+Y+KN + D L+A FS+ G S KVM D G ++GFGF
Sbjct: 323 RAGEF----------TNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGF 372
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQH 386
V F S E A +AV +G + +PL+V AQRK +RQA L+ + Q
Sbjct: 373 VSFESHEAARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQR 420
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/362 (43%), Positives = 242/362 (66%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DVT+ LF F+ + S+R+C+D T RS Y YVNFL+ DA + ++
Sbjct: 10 ASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQKVLD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL SIDN L E F FG I+S KV
Sbjct: 70 TMNFDMIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
S+D S+G+ FV F+++ +A+ AIE +NG + + R++VG F + +R L + A +
Sbjct: 130 -MSDDKGSRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQNKANE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E FS++GKI S+ + D +G S+GFGFV+FD + A+RA+E
Sbjct: 189 FTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQRAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKKAER+ L+ FE+ ++ER + +G +Y+KN+D+ + +E+
Sbjct: 249 YMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCRGVKLYIKNLDETIDEEQ 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+++ KVM +E+G +KGFG +CFS PEEA+KA+ +G +L K + +A+A
Sbjct: 309 LRRAFSSFGSMSRVKVM-EEEGRSKGFGLICFSCPEEATKAMAEMNGQVLGSKAINIALA 367
Query: 370 QR 371
QR
Sbjct: 368 QR 369
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 150/293 (51%), Gaps = 28/293 (9%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIE 158
A+L+V +L + L F G ++S ++ +S G+ +V F A ++
Sbjct: 10 ASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQKVLD 69
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEHLVEKFS 212
+N + K I R++ S Y N+F+KNLD + + L E FS
Sbjct: 70 TMNFDMIQGKSI----------RLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFS 119
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FGKI S + D+ G SRG+ FV+F + A RA+E MNG+++ + L+ + + ER
Sbjct: 120 AFGKILSSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKER 178
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
E L+++ E +NVY+KN DD+ DE LK FSQ G I S KVM D G
Sbjct: 179 EAELQNKANE----------FTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGK 228
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+KGFGFV F + E A +AV +G + + ++V AQ+K +RQA L+ + Q
Sbjct: 229 SKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQ 281
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 22/200 (11%)
Query: 185 SPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNP 241
S AKY +L++ +L +DVTE+ L KF+ G + S+ I RD S G+ +VNF N
Sbjct: 2 SVDAKYRHASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNL 61
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG-SNVYVKN 300
DA++ L+ MN +I K + +Q+ A L+ G NV++KN
Sbjct: 62 ADAQKVLDTMNFDMIQGKSIRLMWSQRDA-----------------YLRKSGIGNVFIKN 104
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+D + ++ L HFS G I S+KVM D+KG ++G+ FV F S A +A+ +G +L
Sbjct: 105 LDRSIDNKMLYEHFSAFGKILSSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLK 163
Query: 361 RKPLYVAIAQRKEDRQAHLQ 380
L+V + +++R+A LQ
Sbjct: 164 NCRLFVGPFKNRKEREAELQ 183
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/349 (47%), Positives = 229/349 (65%), Gaps = 9/349 (2%)
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
RA++ N LHGK +RI WS RDP R+SG N+F+KNL + IDN + + F FGNI+
Sbjct: 25 RAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNIL 84
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS--DRVLPS 185
SCKVA EDG SKG+GFV FETEE+A AI+ +NG + K+++VG+F ++ +R L
Sbjct: 85 SCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGE 144
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A ++TN+++KN +E L + F+KFG I S + E G S+GFGFV F NP++A
Sbjct: 145 TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAE 203
Query: 246 RALEAMNGSVI-GSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A++A++ S I G+ + L+ RAQKK+ER L+ + E+ + ER+ KY+G N+YVKN+D+
Sbjct: 204 TAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDE 263
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
V D+ LK F G ITSAKVM DE G +KGFGFVCF PEEA+ AV + M+ KP
Sbjct: 264 TVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKP 323
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG 412
LYVAIAQRKEDR+A L QY Q +A + +P ++Y T PG
Sbjct: 324 LYVAIAQRKEDRRAQLASQYMQRLASMRMHGN--VPGA--AMYNPTQPG 368
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 158/292 (54%), Gaps = 22/292 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +L + + ++D FS F ++ S +V D G S YG+V+F + A AI+
Sbjct: 57 GNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQ 115
Query: 72 VKNHTQLHGKMLRIS-WSCRDPDARKSG-----VANLFVKNLIESIDNVRLQEMFQNFGN 125
N L GK + + + R R+ G N++VKN + + L+++F FGN
Sbjct: 116 KVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGN 175
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV--GDKRIYVGRFIKKSDRVL 183
I SC+V T E GKSKG GFV F E A A++ L+ +T+ D +++V R KKS+R
Sbjct: 176 ITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHA 234
Query: 184 ----------PSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSR 231
KY NL++KNLD V ++ L ++F +G I S + DENG S+
Sbjct: 235 ELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSK 294
Query: 232 GFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
GFGFV F+ P++A A+ MN ++ SK LY A AQ+K +R L Q+ ++
Sbjct: 295 GFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQR 346
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 27/213 (12%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TA ++YV + L F++F ++ S V + G+S +G+V F +P +A
Sbjct: 145 TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEA 202
Query: 67 IRAIEVKNHTQLHGKMLRI------SWSCRDPDARK-------------SGVANLFVKNL 107
A++ + + + G L++ S R + +K GV NL+VKNL
Sbjct: 203 ETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGV-NLYVKNL 261
Query: 108 IESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD 167
E++D+ L++ F+++GNI S KV T E+G+SKG GFV FE E A +A+ +N V
Sbjct: 262 DETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCS 321
Query: 168 KRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
K +YV +K DR A+ + +M+ L S
Sbjct: 322 KPLYVAIAQRKEDR-----RAQLASQYMQRLAS 349
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL--VAKITGMLLEMDNSEL 583
G V+ + + + MLAA +P++QKQ+LGER+Y L+EK P KITGM+LE+DNSEL
Sbjct: 497 GIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSEL 556
Query: 584 LLLLESPESLAVKVEEAVQVL 604
+++L+ E KV+EA VL
Sbjct: 557 IMMLQDSELFRSKVDEAASVL 577
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 172/413 (41%), Positives = 244/413 (59%), Gaps = 15/413 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL PDVT+ L++ F+ +AS+RVC+DS T +S Y YVN+ S DA A+E
Sbjct: 27 ASLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALE 86
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ ++ G RI WS RDP RKSG N+FVKNL +SID L + F +FG I+SCKV
Sbjct: 87 NLNYIEIKGHPTRIMWSNRDPSLRKSGAGNIFVKNLDKSIDTKSLYDTFAHFGTILSCKV 146
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A G S+ +GFV +E+EESA AIE +NG +G K++ V F++K DR YT
Sbjct: 147 AVDSTGASRRYGFVHYESEESAREAIEKVNGMLIGGKKVEVAPFLRKQDR---ETEEVYT 203
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL+++N +D EE L + K+G+I S+++ D G R F FVN+ A+ + +
Sbjct: 204 NLYVRNFPADWDEEALRQFLEKYGEITSMMLKEDSKG--RRFAFVNYKEASVAKEVVTTL 261
Query: 252 NGSVI--GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
N + S L Q K +R+ +L+ QF + K SN+Y+KN+DD D
Sbjct: 262 NDLKLEEASDPLLVCPHQDKVKRQNMLKAQFSTVSPGQDDKRLTSNLYIKNLDDTFDDAS 321
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L F Q GTITS+KVM D ++GFGFVCFS+P+EA+KA+ H ++ KPLYV +A
Sbjct: 322 LGELFKQFGTITSSKVMLDANNNSRGFGFVCFSNPQEATKAIAAMHLKLVKGKPLYVGLA 381
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP-PGIV--SQVPP 419
++++ R L Q G E + +++ S S+YY PG+V + VPP
Sbjct: 382 EKRDQR-----LMRMQQRRGFEPHARDLMFSDPQSMYYQRQFPGVVVPNNVPP 429
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 51/71 (71%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
++NG + QKQ++GERL+P++ + PDL KITGM+LE+DN ELL LL+ + L
Sbjct: 583 VVNGNVQVDDVALQKQMIGERLFPIIARDNPDLAGKITGMMLEIDNQELLQLLDDNDQLK 642
Query: 595 VKVEEAVQVLK 605
K++EA++VLK
Sbjct: 643 AKIDEAIRVLK 653
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 158/328 (48%), Positives = 218/328 (66%), Gaps = 5/328 (1%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 66 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 125
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 126 ADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 185
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 186 GNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 245
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KN++ DVT+E F K+G+I S ++RD E G SRGFGFVNF +
Sbjct: 246 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 305
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+ A A+EA+N + + LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y+KN
Sbjct: 306 HEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKN 365
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD 328
+ DD+ DE+L+ FS G ITSAKVMR+
Sbjct: 366 LSDDIDDEKLRELFSSYGNITSAKVMRE 393
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 161/291 (55%), Gaps = 26/291 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F + G + S C+ A + +S G+ +V + A
Sbjct: 74 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERA 131
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E+LN T + + I S R PA + T N+F+KNLD+ + + L + F+
Sbjct: 132 LEDLNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDTAIDNKALHDTFAA 184
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE G S+G+GFV+++ + A A++ +NG ++ K ++ K +R+
Sbjct: 185 FGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQ 244
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGI 332
+FEE +K +N+YVKN++ DVTDEE + F + G ITSA + RD E G
Sbjct: 245 S----KFEE------MKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGK 294
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
++GFGFV FS E AS AV + Y L + LYV AQ+K +R+ L+ QY
Sbjct: 295 SRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQY 345
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 541 AAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA 600
AAP P QQKQ+LGE +YP + +P+L KITGMLLEMDNSEL+ L++ +L KV+EA
Sbjct: 725 AAPEP-QQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEA 783
Query: 601 VQV 603
+ V
Sbjct: 784 LTV 786
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 158/328 (48%), Positives = 218/328 (66%), Gaps = 5/328 (1%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 110 ADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 169
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 170 GNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 229
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KN++ DVT+E F K+G+I S ++RD E G SRGFGFVNF +
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+ A A+EA+N + + LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y+KN
Sbjct: 290 HEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKN 349
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD 328
+ DD+ DE+L+ FS G ITSAKVMR+
Sbjct: 350 LSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 161/291 (55%), Gaps = 26/291 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F + G + S C+ A + +S G+ +V + A
Sbjct: 58 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAYVNYNNTADGERA 115
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E+LN T + + I S R PA + T N+F+KNLD+ + + L + F+
Sbjct: 116 LEDLNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDTAIDNKALHDTFAA 168
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE G S+G+GFV+++ + A A++ +NG ++ K ++ K +R+
Sbjct: 169 FGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQ 228
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGI 332
+FEE +K +N+YVKN++ DVTDEE + F + G ITSA + RD E G
Sbjct: 229 ----SKFEE------MKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGK 278
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
++GFGFV FS E AS AV + Y L + LYV AQ+K +R+ L+ QY
Sbjct: 279 SRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQY 329
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 541 AAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA 600
AAP P QQKQ+LGE +YP + +P+L KITGMLLEMDNSEL+ L++ +L KV+EA
Sbjct: 710 AAPEP-QQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEA 768
Query: 601 VQV 603
+ V
Sbjct: 769 LTV 771
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/328 (47%), Positives = 217/328 (66%), Gaps = 5/328 (1%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 110 ADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 169
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+A AI+++NG + +K+++VG I K DR
Sbjct: 170 GNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQS 229
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
A +TN+++KN++ DVT+E F K+G+I S ++RD E G SRGFGFVNF +
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
+ A A+E +N + + LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y+KN
Sbjct: 290 HEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKN 349
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD 328
+ DD+ DE+L+ FS G ITSAKVMR+
Sbjct: 350 LSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 202/413 (48%), Gaps = 41/413 (9%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++++ +L + + L D F+ F ++ S +V +D G S YG+V++ + A
Sbjct: 143 TGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATN 201
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDAR------KSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + D + K+ N++VKN+ + + + + +F+
Sbjct: 202 AIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEK 261
Query: 123 FGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+G I S ++ +E GKS+G GFV F E+A+AA+E LN + +++YVGR KK +R
Sbjct: 262 YGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHER 321
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
EE L +++ + A + A G + ++ D
Sbjct: 322 ----------------------EEELRKQY----EAARIEKASKYQGVNLYIKNLSDDID 355
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
D+ R L + G++ +KV+ A + A+ E+ E+ +KE K + +
Sbjct: 356 DEKLRELFSSYGNITSAKVMREAISDVPADAEKDKEADKEKAKKETGDKPEDK---AETK 412
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
D+ ++++ K+ G AK + G +KGFGFVCFS+P+EASKAV + M+H
Sbjct: 413 SDEKSEDKSKSEEKTEGKTDGAKTEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHG 472
Query: 362 KPLYVAIAQRKEDR----QAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP 410
KPLYVA+AQRK+ R +A +Q + + ++ P P+++Y P
Sbjct: 473 KPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMAQPFMQPAVFYGAP 525
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 102/190 (53%), Gaps = 17/190 (8%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L++ LD VTE L E FS G++AS+ + RD S G+ +VN++N D RALE
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N ++I + +Q R+ LR K NV++KN+D + ++ L
Sbjct: 119 LNYTLIKGRPCRIMWSQ----RDPALR------------KTGQGNVFIKNLDTAIDNKAL 162
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
F+ G I S KV +DE G +KG+GFV + + E A+ A+ +G +L+ K ++V
Sbjct: 163 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
Query: 371 RKEDRQAHLQ 380
K+DRQ+ +
Sbjct: 223 AKKDRQSKFE 232
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/403 (42%), Positives = 239/403 (59%), Gaps = 14/403 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL PDVT+ L++ F+ +AS+RVC+DS T +S Y YVN+ S DA A+E
Sbjct: 27 ASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALE 86
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ ++ G RI WS RDP R+SG N+FVKNL +SID L + F +FG I+SCKV
Sbjct: 87 SLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGPILSCKV 146
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A G SK +GFV +E EESA AIE +NG +G KR+ V F++K DR +T
Sbjct: 147 AVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDR---EGEEVFT 203
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL+++N +D EE L + K+G+I S+++ D G R F FVN+ P+ A+ + +
Sbjct: 204 NLYVRNFPADWNEEALRQFLEKYGEITSMMLKEDSKG--RRFAFVNYKEPEVAKEVVNTL 261
Query: 252 NGSVI--GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
N + S+ L Q KA+R+ +LR QF + K SN+Y+KN+DD DE
Sbjct: 262 NDLKLDESSEPLLVCPHQDKAKRQNLLRAQFNNSSMGQEDKRVTSNLYIKNLDDSFDDES 321
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L F GTITS+KVM D ++GFGFVCF++P+EA+KA+ H ++ KPLYV +A
Sbjct: 322 LGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYVGLA 381
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYP--SLYYTTP 410
++++ R Q E S +V+ S P SLYY P
Sbjct: 382 EKRDQRMMR-----MQQRRSFEPHSRDVLFSELPSQSLYYPRP 419
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 150/305 (49%), Gaps = 30/305 (9%)
Query: 93 DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEE 151
D + A+L+V +L + L E+F G + S +V S KS G+ +V + + +
Sbjct: 20 DTQVFSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQ 79
Query: 152 SANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLV 208
A AA+E+LN + I S+R P+ + + N+F+KNLD + + L
Sbjct: 80 DAEAALESLNYIEIKGHPTR----IMWSNR---DPSLRRSGAGNIFVKNLDKSIDTKSLY 132
Query: 209 EKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268
+ FS FG I S +A D +G S+ +GFV+++N + AR A+E +NG +IG K + A +
Sbjct: 133 DTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLR 192
Query: 269 KAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD 328
K +RE E + +N+YV+N D +E L+ + G ITS + D
Sbjct: 193 KQDRE-----------GEEVF----TNLYVRNFPADWNEEALRQFLEKYGEITSMMLKED 237
Query: 329 EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR--KPLYVAIAQRKEDRQAHLQLQYAQH 386
KG + F FV + PE A + VNT + L +PL V Q K RQ L+ Q+
Sbjct: 238 SKG--RRFAFVNYKEPEVAKEVVNTLNDLKLDESSEPLLVCPHQDKAKRQNLLRAQFNNS 295
Query: 387 MAGIE 391
G E
Sbjct: 296 SMGQE 300
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 51/71 (71%)
Query: 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLA 594
++NG + QKQ++GERL+P++ + PDL KITGM+LE+DN ELL LLE + L
Sbjct: 591 VVNGNVQVDDVAMQKQMIGERLFPIIARDNPDLAGKITGMMLEIDNHELLQLLEDNDQLK 650
Query: 595 VKVEEAVQVLK 605
K++EA++VLK
Sbjct: 651 AKIDEAIKVLK 661
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/367 (44%), Positives = 236/367 (64%), Gaps = 4/367 (1%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T ASLYVGDLH DVT+ LF F+ + S+R+C+D + RS YGYVNFL DA
Sbjct: 5 TKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDA 64
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+A+E N + GK +R+ WS RD RKSG+ N+F+KNL +SIDN L E F FG I
Sbjct: 65 QKALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKI 124
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLP 184
+S KV T E+G SKG+GFV ++ + +A+ AIE +NG + D ++V RF + DR L
Sbjct: 125 MSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR 183
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A++TN+++KN D+ +E L FSK+G+ S+ + +D +G S+ FGFV+FD+ A
Sbjct: 184 EKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAA 243
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+ A+E MNG I + ++ RAQKK ER+ L+ FE+ +KERI + + +Y+KN+DD
Sbjct: 244 KNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDT 303
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ DE L+ FS G+I KVM+ E G +KGFG +CF SPE A+KA+ +G +L KPL
Sbjct: 304 IDDETLRKEFSVFGSICRVKVMQ-EAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPL 362
Query: 365 YVAIAQR 371
+A+ Q+
Sbjct: 363 NIALGQK 369
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 152/287 (52%), Gaps = 16/287 (5%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158
A+L+V +L E + L F G ++S ++ +S G+G+V F A A+E
Sbjct: 10 ASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALE 69
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
+N + K I + + D L N+F+KNLD + + L E FS FGKI
Sbjct: 70 TMNFDLIKGKSIRL--MWSQRDACLRKSGI--GNVFIKNLDKSIDNKTLYEHFSPFGKIM 125
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S + DE G S+G+GFV++ + A RA+E MNG ++ L+ AR + + +RE LR
Sbjct: 126 SSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELRE 184
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
+ E +NVY+KN DD+ DE L++ FS+ G S KVM+D G +K FGF
Sbjct: 185 KPAE----------FTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGF 234
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
V F S + A AV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 235 VSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQ 281
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 176/391 (45%), Positives = 239/391 (61%), Gaps = 20/391 (5%)
Query: 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQ 146
WS RDP RK G N+F+KNL IDN L + F FG+I+S K+AT E+GKSKG GFV
Sbjct: 2 WSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVH 61
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAKYTNLFMKNLDSDVTE 204
FE E +A AI+ LNG + + IYV + K+ D L A YTNL++KN++S+ T+
Sbjct: 62 FEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTD 121
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
E E F+KFG I S + +D +G +GFGFVN++ +DA +A+EA+N S + + LY
Sbjct: 122 EQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVG 181
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK 324
RAQKK ER +L+ Q+E R E++ KY+G N++VKN+DD V DE+L+ F+ GTITSAK
Sbjct: 182 RAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAK 241
Query: 325 VMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL----- 379
VMR E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVAIAQRK+ R++ L
Sbjct: 242 VMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 301
Query: 380 ---QLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVPPRPGLMYQPLGLRTGWR 435
Q++Y Q A ++A + P ++Y PP V P P M P+G G
Sbjct: 302 ARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNGPNPQQM-NPMG---GMP 357
Query: 436 ANGFVPPTR--PAFQVSP---LPVNPKHNRQ 461
NG P R P + V P P N N Q
Sbjct: 358 KNGMPPQFRNGPVYGVPPQGGFPRNANDNNQ 388
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 164/294 (55%), Gaps = 19/294 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +LHPD+ + L+D FS F + S ++ D G+S +G+V+F A AI+
Sbjct: 15 GNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAID 73
Query: 72 VKNHTQLHGKMLRIS--WSCRDPDAR----KSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
N L+G+ + ++ S ++ D++ K+ NL+VKN+ + + QE+F FG
Sbjct: 74 ALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGP 133
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VL 183
I+S + DGK KG GFV +E E A A+E LN + + +++YVGR KK++R VL
Sbjct: 134 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVL 193
Query: 184 P--------SPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
AKY NLF+KNLD V +E L E+F+ +G I S + R ENG S+GF
Sbjct: 194 KKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGF 253
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKER 287
GFV F P++A +A+ N ++ K LY A AQ+K R L Q + + + R
Sbjct: 254 GFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMR 307
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 160/363 (44%), Positives = 238/363 (65%), Gaps = 4/363 (1%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
ASLYVGDLH DVT+ LF F+ + S+R+C+D + RS Y YVNFL DA +A+
Sbjct: 9 AASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQKAL 68
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
+ N + GK +R+ WS RD RKSG+ N+F+KNL +SIDN L E F FG I+S K
Sbjct: 69 DTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKILSSK 128
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAA 188
V + E+G S+G+GFV ++ + +A+ AIE +NG + D ++V RF + DR L S +
Sbjct: 129 VMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREAELRSKTS 187
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
++TN+++KNL ++ +E L FSK+G+ S+ + +D+NG S+GFGFV+F N + AR A+
Sbjct: 188 EFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGFVSFYNHEAARNAV 247
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
E MNG I + ++ RAQKK ER+ L+ +FE+ +KERI + + +Y+KN+D+ + DE
Sbjct: 248 EEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAAKLYIKNLDETIDDE 307
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS G+I KVM+ E G +KGFG +CF SPE A+KA+ +G +L K L +A+
Sbjct: 308 TLRREFSSFGSICRVKVMQ-EAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKALNIAL 366
Query: 369 AQR 371
Q+
Sbjct: 367 GQK 369
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 155/293 (52%), Gaps = 28/293 (9%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIE 158
A+L+V +L E + L F G ++S ++ +S G+ +V F + A A++
Sbjct: 10 ASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQKALD 69
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEHLVEKFS 212
+N + K I R++ S Y N+F+KNLD + + L E FS
Sbjct: 70 TMNFDLIQGKSI----------RLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFS 119
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FGKI S + DE G SRG+GFV++ + A RA+E MNG ++ ++ R + + +R
Sbjct: 120 PFGKILSSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDR 178
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
E LR + E +NVY+KN+ D++ DE LK FS+ G S KVM+D+ G
Sbjct: 179 EAELRSKTSE----------FTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGK 228
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+KGFGFV F + E A AV +G ++ + ++V AQ+K +RQA L+ ++ Q
Sbjct: 229 SKGFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQ 281
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 162/363 (44%), Positives = 233/363 (64%), Gaps = 4/363 (1%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
ASLYVGDLH DVT+ LF FS + S+R+C+D + RS Y YVNFL +DA +A+
Sbjct: 9 AASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKAL 68
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + GK +R+ WS RD R+SGV N+F+KNL +SIDN L E F FG I+S K
Sbjct: 69 VTMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIMSSK 128
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAA 188
V T +G SKG+GFV ++ +A+ AIE +NG + + ++V RF + DR L
Sbjct: 129 VMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELRDKPT 187
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
++TN+++KN DV +E L E FSK+G+ S+ + +D G S+GFGFV+FD+ + A+ A+
Sbjct: 188 EFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAV 247
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
E MNG I + ++ RAQKK ER+ L+ FE+ +KERI + + +Y+KN+DD + DE
Sbjct: 248 EDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDE 307
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS G+I KVM+ E G +KGFG +CF SPE A+KA+ +G +L KPL +A+
Sbjct: 308 TLRKEFSVFGSICRVKVMQ-EAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIAL 366
Query: 369 AQR 371
Q+
Sbjct: 367 GQK 369
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 151/289 (52%), Gaps = 20/289 (6%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V +L E + L F G ++S C+ S+ +S G+ +V F A A
Sbjct: 10 ASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQ--RSLGYAYVNFLQVNDAQKA 67
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGK 216
+ +N + K I + + D L N+F+KNLD + + L E FS FG
Sbjct: 68 LVTMNFDVIKGKSIRL--MWSQRDACLRRSGV--GNVFIKNLDKSIDNKTLYEHFSPFGT 123
Query: 217 IASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQIL 276
I S + D G S+G+GFV++ + A RA+E MNG ++ L+ AR + + +RE L
Sbjct: 124 IMSSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAEL 182
Query: 277 RHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF 336
R + E +NVY+KN DDV DE+L+ FS+ G S KVM+D G +KGF
Sbjct: 183 RDKPTE----------FTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGF 232
Query: 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
GFV F S E A AV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 233 GFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQ 281
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 175/391 (44%), Positives = 239/391 (61%), Gaps = 20/391 (5%)
Query: 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQ 146
WS RDP RK G N+F+KNL IDN L + F FG+I+S K+AT E+GKSKG GFV
Sbjct: 2 WSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVH 61
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAKYTNLFMKNLDSDVTE 204
FE E +A AI+ LNG + + IYV + K+ D L A YTNL++KN++S+ T+
Sbjct: 62 FEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTD 121
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
E + F +FG I S + +D +G +GFGFVN++N +DA +A+EA+N S + + LY
Sbjct: 122 EQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVG 181
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK 324
RAQKK ER +L+ Q+E R E++ KY+G N++VKN+DD V DE+L+ F+ GTITSAK
Sbjct: 182 RAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAK 241
Query: 325 VMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL----- 379
VMR E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVAIAQRK+ R++ L
Sbjct: 242 VMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 301
Query: 380 ---QLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVPPRPGLMYQPLGLRTGWR 435
Q++Y Q A ++A + P ++Y PP V P P M P+G G
Sbjct: 302 ARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNGPNPQQM-NPMG---GMP 357
Query: 436 ANGFVPPTR--PAFQVSP---LPVNPKHNRQ 461
NG P R P + V P P N N Q
Sbjct: 358 KNGMPPQFRNGPVYGVPPQGGFPRNANDNNQ 388
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 164/294 (55%), Gaps = 19/294 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +LHPD+ + L+D FS F + S ++ D G+S +G+V+F A AI+
Sbjct: 15 GNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAID 73
Query: 72 VKNHTQLHGKMLRIS--WSCRDPDAR----KSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
N L+G+ + ++ S ++ D++ K+ NL+VKN+ + + Q++F FG
Sbjct: 74 ALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQDLFIQFGP 133
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VL 183
I+S + DGK KG GFV +E E A A+E LN + + +++YVGR KK++R VL
Sbjct: 134 IVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVL 193
Query: 184 P--------SPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
AKY NLF+KNLD V +E L E+F+ +G I S + R ENG S+GF
Sbjct: 194 KKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGKSKGF 253
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKER 287
GFV F P++A +A+ N ++ K LY A AQ+K R L Q + + + R
Sbjct: 254 GFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMR 307
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 191/501 (38%), Positives = 279/501 (55%), Gaps = 51/501 (10%)
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
A AI+ LNG + DK++YVG F++K +R + K+ N+++KNL T++ L + F
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDGLKKVFG 60
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
+FG I S ++ RD +G S+ FGF+NF+ +DA +A+E++NG K Y +AQKK+ER
Sbjct: 61 EFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSER 120
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
EQ L+ +FE+ KE + KY+G N+YVKN+DD + DE+LK FS+ GTITS KVMRD GI
Sbjct: 121 EQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGI 180
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ----HMA 388
++G GFV FS+ EEAS+A++ +G M+ KPLYVA+AQRKE+R+A L+ Q++Q M
Sbjct: 181 SRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLRAQFSQLRPVAMP 240
Query: 389 GIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPT 443
+ P G P + Y PP + +PP+ G YQ VP
Sbjct: 241 PSLAPRMPIYPPGAPGIGQQLFYGQGPPAM---IPPQAGFGYQ----------QQLVPGM 287
Query: 444 RPAFQVSP---LPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQ 500
RP P +P+ + + R P Q +Q +G
Sbjct: 288 RPGGAPMPNFFMPLVQQGQQGQRPGGRRGAGP-------VQQTQQPMPLMQQQMLPRGRM 340
Query: 501 SKYVPNGRIRELNKGSGVSLGT----FNSGGVMARKPDM--------LNGMLAAPSPEQQ 548
+Y P GR GV G ++ GG++ R M L LA PEQQ
Sbjct: 341 YRY-PPGRNGPEGPMPGVPGGMLSVPYDMGGMLPRDSAMGQPMPISTLASALANAPPEQQ 399
Query: 549 KQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSE 608
+ +LGE LYPLV++ + + AK+TGMLLEMD +E+L LLESPE+L KV EA++VL+
Sbjct: 400 RTMLGESLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR--- 456
Query: 609 AKVSTQEAIHPNYLSAEVAVN 629
+ Q+ +P A +++N
Sbjct: 457 ---NVQQTTNPADQLASLSLN 474
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 114/196 (58%), Gaps = 12/196 (6%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
N++VKNL ES + L+++F FGNI S V DGKSK GF+ FET E A A+E+L
Sbjct: 40 NVYVKNLSESTTDDGLKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESL 99
Query: 161 NGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKYT--NLFMKNLDSDVTEEHLV 208
NG DK YVG+ KKS+R KY NL++KNLD + +E L
Sbjct: 100 NGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLK 159
Query: 209 EKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268
E FS+FG I S + RD +G SRG GFV F ++A RAL MNG +I SK LY A AQ+
Sbjct: 160 ELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQR 219
Query: 269 KAEREQILRHQFEEKR 284
K ER LR QF + R
Sbjct: 220 KEERRAKLRAQFSQLR 235
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 19/186 (10%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++YV +L TD L F EF ++ S V +D+ G+S C+G++NF + DA +A+E
Sbjct: 40 NVYVKNLSESTTDDGLKKVFGEFGNITSAVVMRDAD-GKSKCFGFINFETAEDAAKAVES 98
Query: 73 KNHTQLHGKML-----------------RISWSCRDPDARKSGVANLFVKNLIESIDNVR 115
N + K + + ++ + G+ NL+VKNL ++ID+ +
Sbjct: 99 LNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGL-NLYVKNLDDTIDDEK 157
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L+E+F FG I SCKV G S+G GFV F T E A+ A+ +NG + K +YV
Sbjct: 158 LKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALA 217
Query: 176 IKKSDR 181
+K +R
Sbjct: 218 QRKEER 223
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYV +L + D +L + FSEF ++ S +V +D + G S G+V F + +A RA+
Sbjct: 143 NLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPS-GISRGSGFVAFSTSEEASRALSE 201
Query: 73 KNHTQLHGKMLRISWSCRDPDAR 95
N + K L ++ + R + R
Sbjct: 202 MNGKMIVSKPLYVALAQRKEERR 224
>gi|326531316|dbj|BAK05009.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 169/392 (43%), Positives = 243/392 (61%), Gaps = 16/392 (4%)
Query: 238 FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVY 297
F P + + + GS+ ++ KKAER+Q L+ EEKR E I K GSNVY
Sbjct: 1 FQKPRKCQESKRGLEWDRSGSENFVRGKSSKKAERKQYLQLLHEEKRNEIITKSNGSNVY 60
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGY 357
+KNI D+V D+ L+ F++ G ITS K+MRD+KGI+KGFGFVC+S+P+EA AV++ G
Sbjct: 61 IKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYSTPDEAKCAVSSMRGV 120
Query: 358 MLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQV 417
M + KPLYVAIAQRKEDR+A L+ ++A+ +A + G+++ VIP+GYP +Y+ P Q
Sbjct: 121 MFYGKPLYVAIAQRKEDRKARLEQRFAE-LATMAGTASPVIPTGYPHVYFAHPSTHFPQG 179
Query: 418 PPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL-PVNPKHNRQNRGRMNGNMLPQVGA 476
P R G MY P+GL WR N + P +PL P P+ R NRGRM GNM+ A
Sbjct: 180 PSRQGFMYPPIGLGQEWRQNVYPSPHSIQQIHAPLMPNTPRQYRNNRGRMTGNMMTFPHA 239
Query: 477 -HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDM 535
+Y+ S AA S ++Q+ G +KY+P + +G+++ + G ++ D
Sbjct: 240 VNYV--SHPQAAKDFMSMSRQQFGHAKYIPPDVV-----SNGLAI---HHSGPISSVNDS 289
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
+LAA P+QQ+ +LG R+YPLVE++ PDL +KITGMLLE+D S LL +L S ++LA
Sbjct: 290 FASLLAAAPPDQQRDMLGNRIYPLVERYHPDLASKITGMLLELDTSYLLSMLNSQDTLAA 349
Query: 596 KVEEAVQVLKLSEA---KVSTQEAIHPNYLSA 624
KV E VQ L+ ++ K EA+HP +L +
Sbjct: 350 KVNECVQALQGQQSTKNKPEDLEALHPGFLDS 381
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 62/92 (67%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
+N+++KN+ +V ++ L E+F++FG I S+ I RD+ G S+GFGFV + PD+A+ A+ +
Sbjct: 57 SNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYSTPDEAKCAVSS 116
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEE 282
M G + K LY A AQ+K +R+ L +F E
Sbjct: 117 MRGVMFYGKPLYVAIAQRKEDRKARLEQRFAE 148
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 42 RVCKDSTTG----RSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKS 97
R C++S G RS G NF+ + +A E K + QL + R+ KS
Sbjct: 5 RKCQESKRGLEWDRS---GSENFVRGKSSKKA-ERKQYLQL------LHEEKRNEIITKS 54
Query: 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAI 157
+N+++KN+ + +D+ L+E F FGNI S K+ + G SKG GFV + T + A A+
Sbjct: 55 NGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYSTPDEAKCAV 114
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDR 181
++ G K +YV +K DR
Sbjct: 115 SSMRGVMFYGKPLYVAIAQRKEDR 138
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +++Y+ ++ +V D L + F+EF ++ SV++ +D G S +G+V + +P +A
Sbjct: 52 TKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDD-KGISKGFGFVCYSTPDEA 110
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVK 105
A+ +GK L ++ + R D RK+ + F +
Sbjct: 111 KCAVSSMRGVMFYGKPLYVAIAQRKED-RKARLEQRFAE 148
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 153/319 (47%), Positives = 217/319 (68%), Gaps = 2/319 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS+ ++AS+RVC+D+ T RS Y YVN+ + D +A+E
Sbjct: 59 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALE 118
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 119 ELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 178
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR A
Sbjct: 179 AQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 238
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+ +DVTE+ + F K+G + S +ARD+ G SRGFGFVNF + A +A++
Sbjct: 239 FTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAVD 298
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+DDDV D++
Sbjct: 299 ELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDK 358
Query: 310 LKAHFSQCGTITSAKVMRD 328
L+ F G+ITSAKVMR+
Sbjct: 359 LREMFKDFGSITSAKVMRE 377
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 159/290 (54%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F G + S C+ A + +S G+ +V + A
Sbjct: 59 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTR--RSLGYAYVNYNATPDGEKA 116
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + + I S R PA + T N+F+KNLD + + L + F+
Sbjct: 117 LEELNYTIIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 169
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DE G S+G+GFV+++ + A +A++ +NG ++ K +Y K +R+
Sbjct: 170 FGNILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ 229
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +NVYVKNI DVT+++ + F + G +TS+ + RD++G +
Sbjct: 230 ----SKFEE------MKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKS 279
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV F++ E A KAV+ + H + LYV AQ+K +R+ L+ Y
Sbjct: 280 RGFGFVNFTTHESAFKAVDELNNKDFHGQDLYVGRAQKKHEREEELRKSY 329
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L LA+ P QQKQILGE ++P ++ DL KITGMLLEM+N EL+ L+E +L
Sbjct: 659 LQQQLASAPPPQQKQILGELIFPKIQAINADLAGKITGMLLEMENPELVNLIEDESALKA 718
Query: 596 KVEEAVQV 603
KV+EA+ V
Sbjct: 719 KVDEALAV 726
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 158/391 (40%), Positives = 237/391 (60%), Gaps = 36/391 (9%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
M V P ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNF
Sbjct: 1 MNVAPKYRM--ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNF 58
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
L DA +A++ N ++GK +R+ WS RD R+SG+ N+
Sbjct: 59 LQLADAQKALDTMNFDVVNGKSIRLMWSQRDAYLRRSGIGNVM----------------- 101
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
S+D SKG+ FV F+ + +A+ AIE +NG + D +++VGRF + D
Sbjct: 102 -------------SDDQGSKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKD 148
Query: 181 RV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
R L + A ++TN+++KN D+ +E L E FSK+G+ S+ + D +G S+GFGFV+F
Sbjct: 149 REAELRNKAGEFTNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSF 208
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
DN + A++A++ MNG I ++++ RAQKK ER+ L+ FE+ +KERI +G +Y+
Sbjct: 209 DNHEAAKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYI 268
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM 358
KN+DD + DE+L+ FS G+I+ KVM+ E G +KGFG +CFSS EEA+KA+ +G++
Sbjct: 269 KNLDDTIDDEKLRKEFSSFGSISRVKVMQ-EGGQSKGFGLICFSSLEEATKAMTEMNGHI 327
Query: 359 LHRKPLYVAIAQRK-EDRQAHLQLQYAQHMA 388
L KPL +A+A R +R+ +L QY Q++
Sbjct: 328 LGSKPLSIALAHRHYXERKIYLTRQYLQYVG 358
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 146/289 (50%), Positives = 206/289 (71%), Gaps = 4/289 (1%)
Query: 78 LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDG 137
+ G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV E+G
Sbjct: 4 IKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 63
Query: 138 KSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAKYTNLFM 195
SKG+GFV FET E+A AIE +NG + D++++VGRF + +R + + A ++TN+++
Sbjct: 64 -SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTNVYI 122
Query: 196 KNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSV 255
KN D+ +E L E FSK+G S+ + DE+G S+GFGFV+F+ +DA+RA++ MNG
Sbjct: 123 KNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKE 182
Query: 256 IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS 315
+ K +Y RAQKK ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + DE L+ FS
Sbjct: 183 MNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFS 242
Query: 316 QCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPL
Sbjct: 243 PFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 290
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 148/268 (55%), Gaps = 21/268 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 26 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIE 83
Query: 72 VKNHTQLHGKMLRIS-WSCR-----DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
N L+ + + + + R + AR N+++KN E +D+ +L+E+F +G
Sbjct: 84 KMNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFSKYGP 143
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---- 181
+S +V T E GKSKG GFV FE E A A++ +NG + K++YVGR KK +R
Sbjct: 144 ALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTEL 203
Query: 182 ------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GF
Sbjct: 204 KRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM-EGGRSKGF 262
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVL 261
GFV F +P++A +A+ MNG ++ +K L
Sbjct: 263 GFVCFSSPEEATKAVTEMNGRIVATKPL 290
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 11/194 (5%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+F+KNLD + + L + FS FG I S + DENG S+G+GFV+F+ + A RA+E M
Sbjct: 27 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 85
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG ++ + ++ R + + ER + + +E +NVY+KN +D+ DE+LK
Sbjct: 86 NGMLLNDRKVFVGRFKSRKERGAEMGARAKE----------FTNVYIKNFGEDMDDEKLK 135
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
FS+ G S +VM DE G +KGFGFV F E+A +AV+ +G ++ K +YV AQ+
Sbjct: 136 EIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQK 195
Query: 372 KEDRQAHLQLQYAQ 385
K +RQ L+ ++ Q
Sbjct: 196 KGERQTELKRKFEQ 209
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/324 (47%), Positives = 217/324 (66%), Gaps = 6/324 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ LF+ FS + +RVC+D T RS Y YVNF P DA RA++
Sbjct: 16 ASLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALD 75
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCK+
Sbjct: 76 TMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKI 135
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E G S+G+GFV FETEE+A AIE +NG + K+++VGRF+ + +R VL K
Sbjct: 136 VCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRK 194
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASL-LIARDENGTSRGFGFVNFDNPDDARRAL 248
+ N+++KN ++ +E L + F +GKI S ++ D +G +GFGFV+F++P+ A +A+
Sbjct: 195 FNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAV 254
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
EA+NG+ K+LY RAQKK ER+ L+ +FE R ERI +Y+G N+YVKN+DD++ DE
Sbjct: 255 EALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNLDDNIDDE 314
Query: 309 ELKAHFSQCG--TITSAKVMRDEK 330
L+ F+Q G T+ A +R ++
Sbjct: 315 RLRKEFAQFGFQTMPGAPQIRQQR 338
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 150/301 (49%), Gaps = 17/301 (5%)
Query: 85 ISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHG 143
+S + +P +A+L+V +L + L E F G ++ +V +S G+
Sbjct: 1 MSTTTMNPAGPSYPMASLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYA 60
Query: 144 FVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVT 203
+V F+ A A++ +N T+ + I I S R + N+F+KNLD +
Sbjct: 61 YVNFQQPADAERALDTMNFDTIKGRPIR----IMWSQRDPSLRKSGVGNVFIKNLDKSID 116
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYA 263
+ L + FS FG I S I DE+G SRG+GFV+F+ + AR A+E +NG ++ K ++
Sbjct: 117 NKALYDTFSAFGNILSCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFV 175
Query: 264 ARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSA 323
R + ER ++L + K +NVYVKN +++ DE L+ F G I SA
Sbjct: 176 GRFMSRRERLEVLGDKMR----------KFNNVYVKNFSEEINDETLRDMFEPYGKIISA 225
Query: 324 KVMRDEKGINKGFGF-VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQ 382
KVM D+ V F PE A KAV +G K LYV AQ+K +RQA L+ +
Sbjct: 226 KVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEK 285
Query: 383 Y 383
+
Sbjct: 286 F 286
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 40/51 (78%)
Query: 562 KHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVS 612
K +PDL KITGMLLE+DNSELL +LES ESL KV+EAV VL+ +AK S
Sbjct: 404 KQQPDLAGKITGMLLEIDNSELLHMLESQESLEAKVKEAVAVLQAHQAKES 454
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 292 bits (747), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 145/304 (47%), Positives = 201/304 (66%), Gaps = 3/304 (0%)
Query: 28 LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87
L++ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E N+T + G+ RI W
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQF 147
S RDP RK+G N+F+KNL +IDN L + F FGNI+SCKVA E G SKG+GFV +
Sbjct: 62 SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHY 121
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEE 205
ET E+A AI+++NG + +K+++VG I K DR A +TN+++KN++ DVT+E
Sbjct: 122 ETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE 181
Query: 206 HLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
F K+G I S ++RD E G SRGFGFVNF + + A A+E +N + + LY
Sbjct: 182 EFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVG 241
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK 324
RAQKK ERE+ LR Q+E R E+ KY+G N+Y+KN+ DD+ DE+L+ FS G ITSAK
Sbjct: 242 RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAK 301
Query: 325 VMRD 328
VMR+
Sbjct: 302 VMRE 305
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 121/427 (28%), Positives = 206/427 (48%), Gaps = 71/427 (16%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++++ +L + + L D F+ F ++ S +V +D G S YG+V++ + A
Sbjct: 71 TGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEY-GNSKGYGFVHYETAEAATN 129
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDAR------KSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + D + K+ N++VKN+ + + + + +F+
Sbjct: 130 AIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRALFEK 189
Query: 123 FGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+G+I S ++ +E GKS+G GFV F E+A+AA+E LN + +++YVGR KK +R
Sbjct: 190 YGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHER 249
Query: 182 ----------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGT 229
A+KY NL++KNL D+ +E L E FS +
Sbjct: 250 EEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSY--------------- 294
Query: 230 SRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERIL 289
G++ +KV+ A A+ E ++ +E KE+
Sbjct: 295 -----------------------GNITSAKVMREATAEVPTESDKD-----KEADKEKAK 326
Query: 290 KYKGSNVYVKNIDDDVTDEE--LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEA 347
G + + TD++ K G AK + G +KGFGFVCFS+P+EA
Sbjct: 327 GEAGEKT--EEGPEGKTDDKSEEKTEEKTEGKTEGAKPEKKHLGKSKGFGFVCFSNPDEA 384
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--P 403
SKAV + M+H KPLYVA+AQRK+ R++ L+ +Q + + ++A +P + P
Sbjct: 385 SKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMPQPFMQP 444
Query: 404 SLYYTTP 410
+++Y TP
Sbjct: 445 AVFYGTP 451
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 17/175 (9%)
Query: 207 LVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265
L E FS G++AS+ + RD S G+ +VN++N D RALE +N ++I +
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
+Q R+ LR K NV++KN+D + ++ L F+ G I S KV
Sbjct: 62 SQ----RDPALR------------KTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 105
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
+DE G +KG+GFV + + E A+ A+ +G +L+ K ++V K+DRQ+ +
Sbjct: 106 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFE 160
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 272/476 (57%), Gaps = 55/476 (11%)
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G + DK++ V F+++ +R L + A K+ N+F+KNL + T+E L+E F FG I+S +
Sbjct: 1 GMLINDKQVVVTPFVRRQERELTNAATKFNNVFVKNLAEETTDEDLMEVFGGFGPISSAV 60
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE 281
+ RD NG S+ FGFVNF N DDA +A+E +NG V K Y RAQKK+ERE L+ +FE
Sbjct: 61 VMRDANGNSKCFGFVNFKNADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAELKVKFE 120
Query: 282 EKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCF 341
+ RKER K++G N+Y+KN+DD + DE+LK FS GT+ S K+MR +G G GFV
Sbjct: 121 QLRKERTEKFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVAL 180
Query: 342 SSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ------HMAGIEGSSA 395
SS +EA +AVN +G M+ KPLYVA+AQRK++R+A LQ Q+AQ ++ + GS
Sbjct: 181 SSKDEAMRAVNEMNGKMVGSKPLYVAVAQRKDERRAKLQAQFAQLRNVVANVPQMNGSPG 240
Query: 396 NVIPSGYPSL----YYTTPPGIVSQVPPRP-GLMYQPLGLRTGWRANGFVPPTRPAFQVS 450
+ P P++ YY PP + +PP+P G YQ + VP RP
Sbjct: 241 PLYPPRPPAMGQQVYYGQPPHGL--LPPQPSGFGYQ----------HPMVPGMRPGGPQM 288
Query: 451 P---LPVNPKHNRQNRGRMNGNMLPQVGAHYMQ-----QSSQSAASSKDSSNQQKGGQSK 502
P LP + +Q G+ GN P G ++ Q A +S + S+
Sbjct: 289 PNYFLPAVQRPGQQ--GQRMGNRRP--GPPFLHQQQQPLMQQQMAPRGNSRPMRYSQSSR 344
Query: 503 YVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAP---------SPEQQKQILG 553
P+ VSL ++S + P+ + L P SPEQQ+ +LG
Sbjct: 345 VAPD-----------VSLQGYSSLDMGGALPNSSDTGLYMPALASALASASPEQQRVMLG 393
Query: 554 ERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEA 609
E+LYPLV++ + D K+TGMLLEMD +E+L L+ESPE+L KV EA+ VL++++A
Sbjct: 394 EQLYPLVDRLEHDHAGKVTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVLQMAQA 449
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 106/196 (54%), Gaps = 12/196 (6%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
N+FVKNL E + L E+F FG I S V +G SK GFV F+ + A A+EN+
Sbjct: 31 NVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRDANGNSKCFGFVNFKNADDAAKAVENI 90
Query: 161 NGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSDVTEEHLV 208
NG DK YVGR KKS+R + K+ NL++KN+D + +E L
Sbjct: 91 NGKVFNDKEWYVGRAQKKSEREAELKVKFEQLRKERTEKFQGVNLYLKNVDDSIDDEKLK 150
Query: 209 EKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268
E FS FG + S I R G G GFV + D+A RA+ MNG ++GSK LY A AQ+
Sbjct: 151 ELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPLYVAVAQR 210
Query: 269 KAEREQILRHQFEEKR 284
K ER L+ QF + R
Sbjct: 211 KDERRAKLQAQFAQLR 226
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 17/191 (8%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
AT +++V +L + TD +L + F F ++S V +D+ G S C+G+VNF + DA
Sbjct: 25 AATKFNNVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRDAN-GNSKCFGFVNFKNADDA 83
Query: 67 IRAIEVKNHTQLHGK---------------MLRISW-SCRDPDARKSGVANLFVKNLIES 110
+A+E N + K L++ + R K NL++KN+ +S
Sbjct: 84 AKAVENINGKVFNDKEWYVGRAQKKSEREAELKVKFEQLRKERTEKFQGVNLYLKNVDDS 143
Query: 111 IDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
ID+ +L+E+F FG + SCK+ S G+ G GFV +++ A A+ +NG VG K +
Sbjct: 144 IDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPL 203
Query: 171 YVGRFIKKSDR 181
YV +K +R
Sbjct: 204 YVAVAQRKDER 214
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 288 bits (737), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 142/287 (49%), Positives = 198/287 (68%), Gaps = 4/287 (1%)
Query: 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQ 146
WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCK+ + E G S+G+GFV
Sbjct: 2 WSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFVH 60
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTE 204
FETEE+A AIE +NG + K+++VGRF+ + +R+ + K+ N+++KN ++ +
Sbjct: 61 FETEEAARNAIEKVNGMLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEIDD 120
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
E L F FGKI S + +G RGFGFV+++ P+ A +A+ MN K LY
Sbjct: 121 EKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVG 180
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK 324
RAQK+AER+ L+ +F+ ++ER+ +Y+G N+YVKN+DD + DE+L+ FS GTITSAK
Sbjct: 181 RAQKRAERQAELKDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSAK 240
Query: 325 VMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
VM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQR
Sbjct: 241 VM-TEGGRSKGFGFVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 151/275 (54%), Gaps = 21/275 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +L + + L+D FS F ++ S ++ D R YG+V+F + A AIE
Sbjct: 15 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHGSRG--YGFVHFETEEAARNAIE 72
Query: 72 VKNHTQLHGKMLRIS-WSCRDPDARKSG-----VANLFVKNLIESIDNVRLQEMFQNFGN 125
N L+GK + + + R + G N+++KN E ID+ +L+ F+ FG
Sbjct: 73 KVNGMLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEIDDEKLKIWFETFGK 132
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS------ 179
IIS KV T DGK +G GFV +E E+A A+ +N T +K +YVGR K++
Sbjct: 133 IISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQKRAERQAEL 192
Query: 180 ----DRVLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
DR+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GF
Sbjct: 193 KDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSAKVM-TEGGRSKGF 251
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268
GFV F +P++A +A+ MNG +I +K LY A AQ+
Sbjct: 252 GFVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 111/192 (57%), Gaps = 11/192 (5%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+F+KNLD + + L + FS FG I S I DE+G SRG+GFV+F+ + AR A+E +
Sbjct: 16 NVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFVHFETEEAARNAIEKV 74
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG ++ K ++ R + ER + Q +K K K +NVY+KN +++ DE+LK
Sbjct: 75 NGMLLNGKKVFVGRFMNRRERLE----QMGDKMK------KFNNVYIKNFSEEIDDEKLK 124
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F G I SAKVM G +GFGFV + PE A KAV + K LYV AQ+
Sbjct: 125 IWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQK 184
Query: 372 KEDRQAHLQLQY 383
+ +RQA L+ ++
Sbjct: 185 RAERQAELKDKF 196
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 221/358 (61%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN +V +E L E FS++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I K LY RAQKK ER LR +FE + + + G VY+KN+D+ + DE+L+
Sbjct: 261 GKSIDGKALYVGRAQKKIERLAELRRRFERLKVKEKSRPPGVPVYIKNLDETIDDEKLRE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV +G M+ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEEATKAVGEMNGRMVGSKPLHVTLGQ 377
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 130/245 (53%), Gaps = 14/245 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKN D+V DE+LK FS+ G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNFGDEVDDEKLKEIFSEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A L+
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKALYVGRAQKKIERLAELR 285
Query: 381 LQYAQ 385
++ +
Sbjct: 286 RRFER 290
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 240/399 (60%), Gaps = 21/399 (5%)
Query: 4 VPPT--ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
VP T A ASLYVGDL P VT+ L + F F ++ +VRVC+D T RS YGYVNF
Sbjct: 19 VPVTTKALQVASLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFN 78
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
S A +A+E N ++ K +RI W RDP R SG N+FVKNL +D+ L +F+
Sbjct: 79 SHDSAAKAMEALNFKRVGDKCMRIMWQQRDPTLRYSGNGNIFVKNLKNEVDSRELSVIFK 138
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV-GDKR----IYVGRFI 176
FG+I+SCKV E+GKS+G+GFV F+ + +A AIEN+NG D+ +YV FI
Sbjct: 139 KFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEKKMGLYVANFI 198
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
+++ R L + A +TN+++K + V +E + + FSKFG I S +D+NG R F F
Sbjct: 199 RRNAR-LATLVANFTNVYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNG--RVFAFC 255
Query: 237 NFDNPDDARRALEA-----MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKY 291
NF+ +DA +A+EA ++G V + LY RAQ ++ER LR ++ + +
Sbjct: 256 NFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQ------CQT 309
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAV 351
G+N+YV+N D + T+E L F + G I S +VM D G ++GFGFV F + ++A+ A+
Sbjct: 310 LGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAAL 369
Query: 352 NTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
+G ML+ KPL V IAQR++ R L+LQ+ Q + +
Sbjct: 370 REMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQRLQAM 408
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 41/70 (58%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L + S ++Q+ LG+RLY V + PD KITGM LEMD E LL + L KV E
Sbjct: 499 LRSMSVDEQRAALGDRLYIKVFEIAPDHAPKITGMFLEMDLKEAFTLLTNQRLLQEKVIE 558
Query: 600 AVQVLKLSEA 609
A+ VLK E+
Sbjct: 559 ALCVLKAHES 568
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 159/382 (41%), Positives = 234/382 (61%), Gaps = 21/382 (5%)
Query: 6 PTATTP---ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
P+AT P ASLYVGDL P + + +L D F + ++ +VRVC+D T RS YGYVN+
Sbjct: 12 PSATKPLQVASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYGYVNYDD 71
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
+ A +A+E N ++ K +RI W RDP R SG N+FVKNL E +D+ L +F+
Sbjct: 72 VNSASKAMEELNFKRVGEKCIRIMWQQRDPALRYSGSGNIFVKNLKEEVDSRELSLIFKK 131
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT---TVGDK-RIYVGRFIKK 178
FG I+SCKV E GKS+G+GFV F+ +++A AAIE +NG DK +YV FI++
Sbjct: 132 FGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNGDKEHADADKAALYVANFIRR 191
Query: 179 SDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
+ R L + A +TN+++K L V ++ + + FSKFG I S I +D+NG R F F NF
Sbjct: 192 NAR-LAALVANFTNVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKNG--RAFAFCNF 248
Query: 239 DNPDDARRALEA-----MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
+ DDA +A+EA + G + LY RAQ ++ER LR ++ + + G
Sbjct: 249 EKHDDAVKAIEASHDQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQ------CQSLG 302
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
+N+YV+N D + T+++L F + G I S +VM D GI++GFGFV F + ++A+ A+
Sbjct: 303 NNLYVRNFDAEFTEKDLNELFKEYGVIRSCRVMTDANGISRGFGFVSFENADQANAALRE 362
Query: 354 FHGYMLHRKPLYVAIAQRKEDR 375
+G ML+ KPL V IAQR++ R
Sbjct: 363 MNGRMLNGKPLVVNIAQRRDQR 384
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 544 SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
S ++Q+ LG+RLY V + PD KITGM LEM+ E L LL +P+ + KV EA+ V
Sbjct: 499 SVDEQRAALGDRLYIKVHELAPDHAPKITGMFLEMNPKEALALLSNPKLMHEKVTEALCV 558
Query: 604 LKL 606
LK+
Sbjct: 559 LKV 561
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/362 (44%), Positives = 227/362 (62%), Gaps = 5/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LYVGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+
Sbjct: 3 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 62
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV
Sbjct: 63 TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 122
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAA 188
++G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A
Sbjct: 123 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRA 181
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
+TN+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+
Sbjct: 182 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV 241
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
++G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE
Sbjct: 242 LDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDE 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+LK FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V +
Sbjct: 302 KLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 360
Query: 369 AQ 370
Q
Sbjct: 361 GQ 362
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 143/279 (51%), Gaps = 15/279 (5%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSK-GHGFVQFETEESANAAIE 158
A L+V +L + L + F+ G + ++ +S G+G+V F A A+
Sbjct: 3 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 62
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
+N + K + + + DR+ S N+F+KNLD + L FS FG I
Sbjct: 63 TMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDKSIDNRALFYLFSAFGNIL 118
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S + D+NG S+G+ +V+FD+ A RA+ MNG + ++ +Y R + ER
Sbjct: 119 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA---- 173
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
E + ++R +NV+VKNI DD+ DE+LK F + G S KV+RD G +KGFGF
Sbjct: 174 --EVRTRDRA---TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 228
Query: 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
V + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 229 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 267
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 156/358 (43%), Positives = 220/358 (61%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN D+ +E L + FS++G S+ + RD G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVL RAQKK ER LR +FE + + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEASKAVN +G ++ K L+V + Q
Sbjct: 321 EFSLFGSISRAKVMM-EVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQ 377
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 129/245 (52%), Gaps = 14/245 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + D + S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDHLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + ++R +NV+VKN DD+ DE+LK FS+ G
Sbjct: 175 VYVGRFKFPEERAA------EVRTRDRA---TFTNVFVKNFGDDIDDEKLKKLFSEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
S KV+RD G +KGFGFV + + E A KAV HG + K L V AQ+K +R A L+
Sbjct: 226 ESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELR 285
Query: 381 LQYAQ 385
++ +
Sbjct: 286 RRFER 290
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 20/180 (11%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T +++V + D+ D +L FSE+ SV+V +D+ TG+S +G+V + + A +A
Sbjct: 197 TFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKA 255
Query: 70 IEVKNHTQLHGKMLRISWSCRDPD-----------------ARKSGVANLFVKNLIESID 112
+ + + GK+L + + + + R GV +++KNL E+I+
Sbjct: 256 VLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVP-IYIKNLDETIN 314
Query: 113 NVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV 172
+ +L+E F FG+I KV E G+ KG G V F + E A+ A+ +NG VG K ++V
Sbjct: 315 DEKLKEEFSLFGSISRAKVMM-EVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHV 373
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 194/554 (35%), Positives = 287/554 (51%), Gaps = 37/554 (6%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L I L E F + G ++S +V +S G+ +V F+
Sbjct: 2 NPGAPNYPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + I I S R + N+F+KNLD ++ + + +
Sbjct: 62 PADAERALDTMNFDMIKGRPIR----IMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S +A+DE+G S+G+GFV+F+ + A ++++ +NG ++ K +Y + +
Sbjct: 118 TFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPR 177
Query: 270 AEREQIL-----------------RHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
ERE+ L + +FE+ + ER+ +Y+G N+YVKN+DD + DE L+
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRK 237
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F+ GTITSAKVM +E G +KGFGFVCFS PEEA+KAV +G ++ KPLYVA+AQRK
Sbjct: 238 EFTPFGTITSAKVMMEE-GRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRK 296
Query: 373 EDRQAHLQLQYAQHMAGIEGSS-ANVIPSGYPSLYY--TTP-------PGIVSQVPPRPG 422
EDR+AHL QY Q MA + + G Y+ T P P ++Q+ P
Sbjct: 297 EDRKAHLASQYMQRMANVRMQQMGQIFQPGNAGSYFVPTLPQPQRFYGPAQMAQIRATPR 356
Query: 423 LMYQPLGLRTGWR--ANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQ 480
QP +R + ++GF R VG MQ
Sbjct: 357 WPAQPNQVRPNAQTGSSGFAMQAPFRAAPRAPAAQAGAMRNTLSARPITGQQAVGGANMQ 416
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGML 540
S A + S Q + KY N R + + ++P + ML
Sbjct: 417 SRSM-AGPAVGVSPQSRPSNYKYTANMRNPPQTMPMPAQAPVQQAVHIQGQEP-LTASML 474
Query: 541 AAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA 600
AA P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LE ESL KVEEA
Sbjct: 475 AAAPPQEQKQMLGERLFPLIQCMYPALTGKITGMLLEIDNSELLHMLEHSESLKAKVEEA 534
Query: 601 VQVLKLSEAKVSTQ 614
V VL+ +AK + Q
Sbjct: 535 VAVLQAHQAKQANQ 548
Score = 261 bits (667), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 186/301 (61%), Gaps = 30/301 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH D+T+ LF+ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN + + F FGNI+SCKV
Sbjct: 71 TMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
A E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 131 AQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 190
Query: 190 YT---------------------------NLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222
+T NL++KNLD + +E L ++F+ FG I S +
Sbjct: 191 FTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKV 250
Query: 223 ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEE 282
+E G S+GFGFV F P++A +A+ MNG ++GSK LY A AQ+K +R+ L Q+ +
Sbjct: 251 MMEE-GRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQ 309
Query: 283 K 283
+
Sbjct: 310 R 310
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 161/399 (40%), Positives = 240/399 (60%), Gaps = 21/399 (5%)
Query: 4 VPPT--ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
VP T A ASLYVGDL P VT+ L + F F ++ +VRVC+D T RS YGY+NF
Sbjct: 12 VPVTTKALQVASLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFN 71
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
+ A +A+E N ++ K +RI W RDP R SG N+FVKNL +D+ L +F+
Sbjct: 72 NHDSAAKAMEALNFKRVGDKCMRIMWQQRDPALRYSGNGNVFVKNLKNEVDSRELGAIFK 131
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV-GDKR----IYVGRFI 176
FG+I+SCKV E+GKS+G+GFV F+ + +A AIEN+NG D+ +YV FI
Sbjct: 132 KFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGDKDHADEEKKMGLYVANFI 191
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
+++ R L + A +TN+++K + V +E + + FS+FG I S +D+NG R F F
Sbjct: 192 RRNAR-LATLVANFTNVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNG--RVFAFC 248
Query: 237 NFDNPDDARRALEA-----MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKY 291
NF+ +DA +A+EA ++G V + LY RAQ ++ER LR ++ + +
Sbjct: 249 NFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQ------CQT 302
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAV 351
G+N+YV+N D + T+E L F + G I S +VM D G ++GFGFV F + ++A+ A+
Sbjct: 303 LGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFGNADQANAAL 362
Query: 352 NTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
+G ML+ KPL V IAQR++ R L+LQ+ Q + +
Sbjct: 363 REMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQRLQAM 401
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 38/66 (57%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L S ++Q+ LG+RLY V + PD KITGM LEMD E LL + L KV E
Sbjct: 498 LRTMSVDEQRAALGDRLYIKVFEIAPDHAPKITGMFLEMDLKEAFTLLNNQRLLQEKVIE 557
Query: 600 AVQVLK 605
A+ VLK
Sbjct: 558 ALCVLK 563
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 158/394 (40%), Positives = 235/394 (59%), Gaps = 21/394 (5%)
Query: 6 PTATTP---ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
P + P AS+YVGDL + + +L + F F ++ +VRVC+D T RS YGYVNF +
Sbjct: 16 PQVSKPMQIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDN 75
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
H A RAIE N ++ K +R+ W RDP R SG N+FVKNL + +D+ L ++F
Sbjct: 76 HHSAERAIESMNFRRVGDKCVRLMWQQRDPSLRYSGNGNVFVKNLEKDVDSKSLHDIFTK 135
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNG----TTVGDKRIYVGRFIKK 178
FG+I+SCKV E+GKS+G+GFV F+ E SA AI +NG + K +YV FI++
Sbjct: 136 FGSILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDKKALYVANFIRR 195
Query: 179 SDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
+ R L + A +TN+++K + V +E + F+KFG I S +D++G R F F NF
Sbjct: 196 NAR-LAALVANFTNVYIKQVLPTVNKEVIENFFAKFGGITSAAACKDKSG--RVFAFCNF 252
Query: 239 DNPDDARRALEAM-----NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
+ DDA +A+EAM +G + LY RAQ ++ER LR ++ + + G
Sbjct: 253 EKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQS------LG 306
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
+N+YV+N D + T +L F + G + S +VM E G ++GFGFV FS+ +EA+ A+
Sbjct: 307 NNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMMSESGASRGFGFVSFSNADEANAALRE 366
Query: 354 FHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHM 387
+G ML+ KPL V IAQR++ R L+LQ+ Q +
Sbjct: 367 MNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQRL 400
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L + SP++Q+ LG+RL+ V + P+L KITGM LEM+ E LL + L +V E
Sbjct: 484 LESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMNPKEAYELLNDQKRLEERVTE 543
Query: 600 AVQVLK 605
A+ VLK
Sbjct: 544 ALCVLK 549
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 154/358 (43%), Positives = 222/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL P+VT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+K+L +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL ++ +E L E FS++G S+ + RD +G S+GFGFV ++ + A++++ ++
Sbjct: 201 VFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE + + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKTIDGKVLYVGRAQKKIERLAELRRRFERLKLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGF VCFSS EEA+KAV+ +G +L KPL V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EMGQGKGFAVVCFSSFEEATKAVDEMNGPVLGSKPLSVTLGQ 377
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 132/245 (53%), Gaps = 14/245 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+K+LD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKHLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRTLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + ++R +NV+VKN+ D++ DE+LK FS+ G
Sbjct: 175 VYVGRFKFPEERAA------EVRTRDRA---TFTNVFVKNLGDNMDDEKLKELFSEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
S KV+RD G +KGFGFV + + E A K+V HG + K LYV AQ+K +R A L+
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLHGKTIDGKVLYVGRAQKKIERLAELR 285
Query: 381 LQYAQ 385
++ +
Sbjct: 286 RRFER 290
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/392 (40%), Positives = 242/392 (61%), Gaps = 19/392 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEF-KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
ASLYVGDL DV + EL++ F+ F ++ SVRVC+D T S YGYVNF +P DA +
Sbjct: 29 ASLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNFATPEDAAKVY 88
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
E N +L G+ +RI +S RDP R+SGV N+F+KNL +DN L + F+ FG ++SC+
Sbjct: 89 EAANFEELKGQPVRIMFSERDPTKRRSGVGNIFIKNLSAEVDNKALYDTFRVFGTVLSCR 148
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK- 189
V ++G S+G FVQ+E E A I +N + DK + V + + R+L + +
Sbjct: 149 VLYDQEGNSRGIAFVQYEDAEVAKQVIAQVNDKKILDKVVKVEAYKPRRQRMLEAEETQK 208
Query: 190 -YTNLFMKNLDSDVTEEHLVEKFSKFGKIAS-LLIARDENGTSRGFGFVNFDNPDDARRA 247
+TN+F KN+ +D+++E ++++F FG+I S +L + D+ G +GFV + + DA++A
Sbjct: 209 NFTNVFFKNVAADISDEDIMKEFENFGEIESKVLKSHDQFGR---YGFVAYKDTADAQKA 265
Query: 248 LEAMNGSVIGSK--VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+ +N +G+ LY ARAQ+K+ER LR +FE +R E KYK +N+Y+KN +DV
Sbjct: 266 VSELNDKPLGADGTKLYVARAQRKSERMGRLRREFERRRTEMRAKYKDANLYIKNFSEDV 325
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR-KPL 364
T++EL+ F GTI S +V++D G ++ FGFV FSS EEA++A+ +G M KPL
Sbjct: 326 TEDELRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSSEEEATRAIQEMNGRMTADGKPL 385
Query: 365 YVAIAQRKEDRQAHLQ---------LQYAQHM 387
YV+ + KE+R +Q +QY Q M
Sbjct: 386 YVSRFRNKEERAQEVQRQRMMTAQNMQYQQWM 417
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 551 ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
+LG L+ LV+ +P KITGMLL+ + +L LE+P +L +++A +VL
Sbjct: 490 VLGNPLFSLVQAQQPKHAPKITGMLLDQPDEAVLEYLENPAALKAALDQAYKVL 543
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 159/358 (44%), Positives = 224/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV S+
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV-VSD 140
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
D SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 141 DHGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN D+ +E L E FS++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ ++DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESISDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGHGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 126/237 (53%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D++G S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVSDDHG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + ++R +NV+VKN DD+ DE+LK FS+ G
Sbjct: 175 VYVGRFKFPEERAA------EVRTRDRATF---TNVFVKNFGDDMDDEKLKELFSEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/358 (42%), Positives = 219/358 (61%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL ++IDN L +F FGNI+SCKV +
Sbjct: 81 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDD 140
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 141 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERATFTN 199
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN D+ +E L + FS++G S+ + RD G S+GFGFV ++ + A++A+ ++
Sbjct: 200 VFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 259
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVL RAQKK ER LR +FE + + + G +Y+KN+D+ + DE+LK
Sbjct: 260 GKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKE 319
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA KAV+ +G ++ K L+V + Q
Sbjct: 320 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLHVTLGQ 376
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 129/245 (52%), Gaps = 14/245 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 59 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 114
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 115 TIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 173
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + +ER +NV+VKN DD+ DE+L FS+ G
Sbjct: 174 VYVGRFKFPEERAA------EVRTRERA---TFTNVFVKNFGDDIDDEKLNKLFSEYGPT 224
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
S KV+RD G +KGFGFV + + E A KAV HG + K L V AQ+K +R A L+
Sbjct: 225 ESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELR 284
Query: 381 LQYAQ 385
++ +
Sbjct: 285 RRFER 289
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 96/180 (53%), Gaps = 20/180 (11%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T +++V + D+ D +L FSE+ SV+V +D+ TG+S +G+V + + A +A
Sbjct: 196 TFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKA 254
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDA-----------------RKSGVANLFVKNLIESID 112
+ + + GK+L + + + + R SGV +++KNL E+I+
Sbjct: 255 VLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVP-IYIKNLDETIN 313
Query: 113 NVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV 172
+ +L+E F +FG+I KV E G+ KG G V F + E A A++ +NG +G K ++V
Sbjct: 314 DEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLHV 372
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 158/358 (44%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN D+ +E L E FS++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRAPGVPIYIKNLDETIDDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIMGSKPLHVTLGQ 377
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 127/237 (53%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + ++R +NV+VKN DD+ DE+LK FS+ G+
Sbjct: 175 VYVGRFKFPEERAA------EVRTRDRATF---TNVFVKNFGDDMDDEKLKEIFSEYGST 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 159/358 (44%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
L+GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLLNGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL D+ +E L E FS++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I K+LY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKILYVGRAQKKIERLAELRRRFERLRLKDKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G + KPL+V + Q
Sbjct: 321 EFSPFGSISRAKVMM-EVGQGKGFGVVCFSSFEEAAKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 127/237 (53%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLLNGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + ++R +NV+VKN+ DD+ DE+LK FS+ G
Sbjct: 175 VYVGRFKFPEERAA------EVRTRDRATF---TNVFVKNLGDDMDDEKLKELFSEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKILYVGRAQKKIERLA 282
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 158/358 (44%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEASKAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEASKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKNI DD+ DE+LK F + G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKNI DD+ DE+LK F + G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKNI DD+ DE+LK F + G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 233/385 (60%), Gaps = 18/385 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
AS+YVGDL + + +L + F F ++ +VRVC+D T RS YGYVNF + A +AIE
Sbjct: 25 ASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHESAEKAIE 84
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++ K +R+ W RDP R SG N+FVKNL + +D+ L ++F FG+I+SCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNG----TTVGDKRIYVGRFIKKSDRVLPSPA 187
E+GKS+G+GFV F+ E SA AI +NG + K +YV FI+++ R L +
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNAR-LAALV 203
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A +TN+++K + V++E + + F+KFG I S +D++G R F F NF+ DDA +A
Sbjct: 204 ANFTNVYIKQVLPTVSKEVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 248 LEAM-----NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+EAM +G + LY RAQ ++ER LR ++ + + G+N+YV+N D
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQS------LGNNLYVRNFD 315
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ T +L F + G + S +VM E G ++GFGFV FS+ +EA+ A+ +G ML+ K
Sbjct: 316 PEFTGADLLELFKEYGDVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGK 375
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQHM 387
PL V IAQR++ R L+LQ+ Q +
Sbjct: 376 PLIVNIAQRRDQRYTMLRLQFQQRL 400
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 161/301 (53%), Gaps = 35/301 (11%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+++V +L +I+ +L E+F+ FG I++ +V +S G+G+V F+ ESA AI
Sbjct: 24 IASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHESAEKAI 83
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKF 214
E++N VGDK + + ++ D PA +Y+ N+F+KNL+ DV + L + F+KF
Sbjct: 84 ESMNFKRVGDKCVRL--MWQQRD-----PALRYSGNGNVFVKNLEKDVDSKSLHDIFTKF 136
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGS----KVLYAARAQKKA 270
G I S + +DE G SRG+GFV+F + A+ A+ MNG+ + K LY A ++
Sbjct: 137 GSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRN 196
Query: 271 EREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK 330
R L F +NVY+K + V+ E ++ F++ G ITSA +D+
Sbjct: 197 ARLAALVANF-------------TNVYIKQVLPTVSKEVIEKFFAKFGGITSAAACKDKS 243
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLH-----RKPLYVAIAQRKEDRQAHLQLQYAQ 385
G + F F F ++A KAV H + + + LYV AQ + +R L+ +Y Q
Sbjct: 244 G--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ 301
Query: 386 H 386
H
Sbjct: 302 H 302
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L + SP++Q+ LG+RL+ V + P+L KITGM LEM E LL + L +V E
Sbjct: 494 LESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRLEDRVTE 553
Query: 600 AVQVLK 605
A+ VLK
Sbjct: 554 ALCVLK 559
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVML-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKNI DD+ DE+LK F + G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/358 (43%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKNI +D+ DE+LK F + G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGEDIDDEKLKELFCEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLA 282
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 222/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN D+ +E L E FS++G S+ + RD G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 126/237 (53%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + ++R +NV+VKN DD+ DE+LK FS+ G
Sbjct: 175 VYVGRFKFPEERAA------EVRTRDRATF---TNVFVKNFGDDMDDEKLKELFSEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLHGKSMDGKVLYVGRAQKKIERLA 282
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/385 (39%), Positives = 233/385 (60%), Gaps = 18/385 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
AS+YVGDL + + +L + F F ++ +VRVC+D T RS YGYVNF + A +AIE
Sbjct: 25 ASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++ K +R+ W RDP R SG N+FVKNL + +D+ L ++F FG+I+SCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNG----TTVGDKRIYVGRFIKKSDRVLPSPA 187
E+GKS+G+GFV F+ E SA AI +NG + K +YV FI+++ R L +
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNAR-LAALV 203
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A +TN+++K + V ++ + + F+KFG I S +D++G R F F NF+ DDA +A
Sbjct: 204 ANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 248 LEAM-----NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+EAM +G + LY RAQ ++ER LR ++ + + G+N+YV+N D
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQA------LGNNLYVRNFD 315
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ T +L F + G + S +VM E G+++GFGFV FS+ +EA+ A+ +G ML+ K
Sbjct: 316 PEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGK 375
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQHM 387
PL V IAQR++ R L+LQ+ Q +
Sbjct: 376 PLIVNIAQRRDQRYTMLRLQFQQRL 400
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 161/303 (53%), Gaps = 35/303 (11%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+++V +L +I+ +L E+F+ FG I++ +V +S G+G+V F+ +SA AI
Sbjct: 24 IASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAI 83
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKF 214
E++N VGDK + + ++ D PA +Y+ N+F+KNL+ DV + L + F+KF
Sbjct: 84 ESMNFKRVGDKCVRL--MWQQRD-----PALRYSGNGNVFVKNLEKDVDSKSLHDIFTKF 136
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGS----KVLYAARAQKKA 270
G I S + +DE G SRG+GFV+F + A+ A+ MNG+ + K LY A ++
Sbjct: 137 GSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRN 196
Query: 271 EREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK 330
R L F +NVY+K + V + ++ F++ G ITSA +D+
Sbjct: 197 ARLAALVANF-------------TNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKS 243
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLH-----RKPLYVAIAQRKEDRQAHLQLQYAQ 385
G + F F F ++A KAV H + + + LYV AQ + +R L+ +Y Q
Sbjct: 244 G--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ 301
Query: 386 HMA 388
H A
Sbjct: 302 HQA 304
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L + SP++Q+ LG+RL+ V + P+L KITGM LEM E LL + L +V E
Sbjct: 490 LESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRLEERVTE 549
Query: 600 AVQVLK 605
A+ VLK
Sbjct: 550 ALCVLK 555
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 224/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL DVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL D+ +E L E FS++G+I S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESIDDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ K L+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRLVGSKALHVTLGQ 377
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 128/237 (54%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRGLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + ++R +NV+VKN+ DD+ DE+LK FS+ G I
Sbjct: 175 VYVGRFKFPEERAA------EVRTRDRATF---TNVFVKNLGDDMNDEKLKELFSEYGQI 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELHGKSMDGKVLYVGRAQKKIERLA 282
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 155/358 (43%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL P+VT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVRTRDKATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KNL D+ +E L FS++G+ S+ + RD +G S+GFGFV ++ D A++A+ ++
Sbjct: 201 VFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + +E+LK
Sbjct: 261 GKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDEEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG +CFSS EEA+KAV +G ++ KPL+V + Q
Sbjct: 321 EFSAFGSISRAKVMM-EVGQGKGFGVICFSSFEEATKAVEEMNGRLVGSKPLHVTLGQ 377
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 126/237 (53%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRSLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + K +NV+VKN+ DD+ DE+LK FS+ G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DKATFTNVFVKNLGDDMDDEKLKTLFSEYGQT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S K++RD G +KGFGFV + + + A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLA 282
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/358 (43%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FG+I+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGDILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKNI DD+ DE+LK F + G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 232/385 (60%), Gaps = 18/385 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
AS+YVGDL + + +L + F F ++ +VRVC+D T RS YGYVNF + A +AIE
Sbjct: 25 ASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++ K +R+ W RDP R SG N+FVKNL + +D+ L ++F FG+I+SCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNG----TTVGDKRIYVGRFIKKSDRVLPSPA 187
E+GKS+G+GFV F+ E SA AI +NG + K +YV FI+++ R L +
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNAR-LAALV 203
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A +TN+++K + V +E + + F+KFG I S +D++G R F F NF+ DDA +A
Sbjct: 204 ANFTNVYIKQVLPTVNKEVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 248 LEAM-----NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+EAM +G + LY RAQ ++ER LR ++ + + G+N+YV+N D
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQS------LGNNLYVRNFD 315
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ T +L F + G + S +VM E G ++GFGFV FS+ +EA+ A+ +G ML+ K
Sbjct: 316 PEFTGADLLELFKEYGEVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGK 375
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQHM 387
PL V IAQR++ R L+LQ+ Q +
Sbjct: 376 PLIVNIAQRRDQRYTMLRLQFQQRL 400
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 160/301 (53%), Gaps = 35/301 (11%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+++V +L +I+ +L E+F+ FG I++ +V +S G+G+V F+ +SA AI
Sbjct: 24 IASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAI 83
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKF 214
E++N VGDK + + ++ D PA +Y+ N+F+KNL+ DV + L + F+KF
Sbjct: 84 ESMNFKRVGDKCVRL--MWQQRD-----PALRYSGNGNVFVKNLEKDVDSKSLHDIFTKF 136
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGS----KVLYAARAQKKA 270
G I S + +DE G SRG+GFV+F + A+ A+ MNG+ + K LY A ++
Sbjct: 137 GSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRN 196
Query: 271 EREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK 330
R L F +NVY+K + V E ++ F++ G ITSA +D+
Sbjct: 197 ARLAALVANF-------------TNVYIKQVLPTVNKEVIEKFFAKFGGITSAAACKDKS 243
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLH-----RKPLYVAIAQRKEDRQAHLQLQYAQ 385
G + F F F ++A KAV H + + + LYV AQ + +R L+ +Y Q
Sbjct: 244 G--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ 301
Query: 386 H 386
H
Sbjct: 302 H 302
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L + SP++Q+ LG+RL+ V + P+L KITGM LEM E LL + L +V E
Sbjct: 490 LESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRLEERVTE 549
Query: 600 AVQVLK 605
A+ VLK
Sbjct: 550 ALCVLK 555
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 222/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN +D+ +E L E FS +G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS E+A+KAV+ +G + KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 126/237 (53%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + ++R +NV+VKN +D+ DE+LK FS G
Sbjct: 175 VYVGRFKFPEERAA------EVRTRDRATF---TNVFVKNFGNDMDDEKLKEIFSGYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG ++ K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 221/358 (61%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTKDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN D+ +E L E FS +G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS E+A+KAV+ +G + KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 126/237 (53%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + K+R +NV+VKN DD+ DE+LK FS G
Sbjct: 175 VYVGRFKFPEERAA------EVRTKDRATF---TNVFVKNFGDDMDDEKLKEIFSGYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG ++ K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 220/358 (61%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL + IDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN D+ +E L E FS +G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G + KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 126/237 (53%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 CIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + ++R +NV+VKN DD+ DE+LK FS G
Sbjct: 175 VYVGRFKFPEERAA------EVRTRDRATF---TNVFVKNFGDDMDDEKLKEIFSGYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG ++ K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 220/358 (61%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL + IDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN D+ +E L E FS +G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G + KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 126/237 (53%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 CIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + ++R +NV+VKN DD+ DE+LK FS G
Sbjct: 175 VYVGRFKFPEERAA------EVRTRDRATF---TNVFVKNFGDDMDDEKLKEIFSGYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG ++ K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/385 (39%), Positives = 233/385 (60%), Gaps = 18/385 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
AS+YVGDL + + +L + F F ++ +VRVC+D T RS YGYVNF + A +AIE
Sbjct: 25 ASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIE 84
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++ K +R+ W RDP R SG N+FVKNL + +D+ L ++F FG+I+SCKV
Sbjct: 85 SMNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKV 144
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNG----TTVGDKRIYVGRFIKKSDRVLPSPA 187
E+GKS+G+GFV F+ E SA AI +NG + K +YV FI+++ R L +
Sbjct: 145 MQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNAR-LAALV 203
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A +TN+++K + V ++ + + F+KFG I S +D++G R F F NF+ DDA +A
Sbjct: 204 ANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKA 261
Query: 248 LEAM-----NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+EAM +G + LY RAQ ++ER LR ++ + + G+N+YV+N D
Sbjct: 262 VEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQA------LGNNLYVRNFD 315
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ T +L F + G + S +VM E G+++GFGFV FS+ +EA+ A+ +G ML+ K
Sbjct: 316 PEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGK 375
Query: 363 PLYVAIAQRKEDRQAHLQLQYAQHM 387
PL V IAQR++ R ++LQ+ Q +
Sbjct: 376 PLIVNIAQRRDQRYTIVRLQFQQRL 400
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 161/303 (53%), Gaps = 35/303 (11%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+++V +L +I+ +L E+F+ FG I++ +V +S G+G+V F+ +SA AI
Sbjct: 24 IASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAI 83
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKF 214
E++N VGDK + + ++ D PA +Y+ N+F+KNL+ DV + L + F+KF
Sbjct: 84 ESMNFKRVGDKCVRL--MWQQRD-----PALRYSGNGNVFVKNLEKDVDSKSLHDIFTKF 136
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGS----KVLYAARAQKKA 270
G I S + +DE G SRG+GFV+F + A+ A+ MNG+ + K LY A ++
Sbjct: 137 GSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRN 196
Query: 271 EREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK 330
R L F +NVY+K + V + ++ F++ G ITSA +D+
Sbjct: 197 ARLAALVANF-------------TNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKS 243
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLH-----RKPLYVAIAQRKEDRQAHLQLQYAQ 385
G + F F F ++A KAV H + + + LYV AQ + +R L+ +Y Q
Sbjct: 244 G--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQ 301
Query: 386 HMA 388
H A
Sbjct: 302 HQA 304
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L + SP++Q+ LG+RL+ V + PD+ KITGM LEM E LL + L +V E
Sbjct: 490 LESMSPQEQRAALGDRLFLKVYEIPPDVAPKITGMFLEMKPKEAYELLNDQKRLEERVTE 549
Query: 600 AVQVLK 605
A+ VLK
Sbjct: 550 ALCVLK 555
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 228/373 (61%), Gaps = 18/373 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL P +++ +L + F + ++ +VRVC+D T RS YGYVN+ + + A +A+E
Sbjct: 21 ASLYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSATKAME 80
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++ K +RI W RDP R SG N+FVKNL +D+ L +F+ FG I+SCKV
Sbjct: 81 EMNFKRVGEKCIRIMWQQRDPALRYSGNGNVFVKNLKGEVDSRELSLIFKKFGEILSCKV 140
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTT-VGDKR---IYVGRFIKKSDRVLPSPA 187
E G S+G+GFV F+ + +A +AIE++NG T D++ +YV FI+++ R L +
Sbjct: 141 MDDESGNSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTALYVANFIRRNAR-LAALV 199
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A +TN+++K + V + + + FSKFG I S I +D+NG R F F NF+ DDA +A
Sbjct: 200 ANFTNVYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKNG--RAFAFCNFEKHDDAVKA 257
Query: 248 LEAMN-----GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+E + G + LY RAQ ++ER LR ++ + + G+N+YV+N D
Sbjct: 258 IEEFHDHEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQ------CQSLGNNLYVRNFD 311
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ T+++L F + G I S +VM D G+++GFGFV F + ++A+ A+ G ML+ K
Sbjct: 312 PEFTEKDLNELFKEYGVIRSCRVMTDANGVSRGFGFVSFENADQANAALREMSGRMLNGK 371
Query: 363 PLYVAIAQRKEDR 375
PL V IAQR++ R
Sbjct: 372 PLVVNIAQRRDQR 384
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 154/300 (51%), Gaps = 35/300 (11%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
VA+L+V +L +I +L E+F+ +G I++ +V +S G+G+V ++ SA A+
Sbjct: 20 VASLYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSATKAM 79
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKF 214
E +N VG+K I + ++ D PA +Y+ N+F+KNL +V L F KF
Sbjct: 80 EEMNFKRVGEKCIRI--MWQQRD-----PALRYSGNGNVFVKNLKGEVDSRELSLIFKKF 132
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK----VLYAARAQKKA 270
G+I S + DE+G SRG+GFV+F + + A+ A+E+MNG + LY A ++
Sbjct: 133 GEILSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTALYVANFIRRN 192
Query: 271 EREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK 330
R L F +NVY+K I V ++ FS+ G ITSA + +D+
Sbjct: 193 ARLAALVANF-------------TNVYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKN 239
Query: 331 GINKGFGFVCFSSPEEASKAVNTFH-----GYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G + F F F ++A KA+ FH G + LYV AQ + +R L+ +Y Q
Sbjct: 240 G--RAFAFCNFEKHDDAVKAIEEFHDHEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQ 297
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 37/61 (60%)
Query: 546 EQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
E+Q+ LG+RLY V + PD KITGM LEM+ E LL + L KV EA+ VLK
Sbjct: 487 EEQRAALGDRLYIKVYELAPDHAPKITGMFLEMNPKEAHTLLTNQRLLQDKVTEALCVLK 546
Query: 606 L 606
+
Sbjct: 547 V 547
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 154/358 (43%), Positives = 222/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSG+ N+F+KNL +SIDN L +F FG+I+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN D+ ++ L E FS++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG +CFSS EEA+KAV+ +G ++ KPL V + Q
Sbjct: 321 EFSSFGSISRAKVMV-EVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGIG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + K +NV+VKN DD+ D++LK FS+ G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DKATFTNVFVKNFGDDMDDDKLKELFSEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 96/181 (53%), Gaps = 20/181 (11%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T +++V + D+ D +L + FSE+ SV+V +DS +G+S +G+V + + A +
Sbjct: 196 ATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQK 254
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPD-----------------ARKSGVANLFVKNLIESI 111
A+ + + GK+L + + + + +R GV +++KNL E+I
Sbjct: 255 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETI 313
Query: 112 DNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIY 171
D+ +L+E F +FG+I KV E G+ KG G + F + E A A++ +NG VG K +
Sbjct: 314 DDEKLKEEFSSFGSISRAKVMV-EVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQ 372
Query: 172 V 172
V
Sbjct: 373 V 373
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 162/391 (41%), Positives = 228/391 (58%), Gaps = 19/391 (4%)
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
+EV N+ +L GK +RI +S RDP R SG N+FVKNL ESIDN +L +MF FG ++SC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
KVA G SKG+GFVQF ++ S A NGT + ++ I+V F+ + +
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQW---DKSRV 117
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL T+ L F +FG+I S ++ +D G SR FGFVNF+ + A A+E
Sbjct: 118 FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKY-KGSNVYVKNIDDDVTDE 308
MNG V+ K L+ RAQ+K R + L+ +FE ++ R +K KG N+YVKN+DD V +
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+L+ FS+ GTITS KVM GI+KG GFV FS+ EEASKA+ +G M+ KP+YV++
Sbjct: 238 KLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSL 297
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYT---TPPGIVSQVPPRPGLMY 425
AQ KE + HLQ Q+ N PS + ++ P ++SQ P G +
Sbjct: 298 AQCKEQHKLHLQTQF-----------NNPPPSPHQQPIFSQVVAPATMLSQQTPLRGYNF 346
Query: 426 QPLGLRTGWRANGFVPPTRPAFQVSPLPVNP 456
QP + N P + P F V P P P
Sbjct: 347 QPYSMCGSRMPNSCPPISIPNFMV-PQPFRP 376
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++YV +L TD +L F EF + S V KD G+S +G+VNF A+ AIE
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIE 177
Query: 72 VKNHTQLHGKMLRISWS-------------------CRDPDARKSGVANLFVKNLIESID 112
N + K L + + RD RK NL+VKNL +S+D
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKG--MNLYVKNLDDSVD 235
Query: 113 NVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV 172
N +L+E+F FG I SCKV +G SKG GFV+F T E A+ A+ +NG VG+K IYV
Sbjct: 236 NTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 155/359 (43%), Positives = 224/359 (62%), Gaps = 7/359 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSG+ N+F+KNL +SIDN L +F FG+I+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN D+ ++ L E FS++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKTRPPGVPIYIKNLDETIDDEKLKE 320
Query: 313 HFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM + E+G KGFG VCFSS EEA+KAV+ +G ++ KPL V + Q
Sbjct: 321 EFSSFGSISRAKVMVEVEQG--KGFGVVCFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGIG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKN DD+ D++LK FS+ G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNFGDDMDDDKLKELFSEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/319 (43%), Positives = 198/319 (62%), Gaps = 24/319 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS+ ++AS+RVC+D+ T RS Y YVN+ + D +A+E
Sbjct: 59 ASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALE 118
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 119 ELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKV 178
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR A
Sbjct: 179 AQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 238
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+ +DVTE+ + F K+G + S +ARD+ G SRGFGFVNF + A +A++
Sbjct: 239 FTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVD 298
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N + LY RAQKK ERE+ LR +E R+ E
Sbjct: 299 ELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARR----------------------GE 336
Query: 310 LKAHFSQCGTITSAKVMRD 328
+ +CG+ITS KVMR+
Sbjct: 337 GQQMNKECGSITSTKVMRE 355
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 220/355 (61%), Gaps = 8/355 (2%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFM 195
+G SKG+ +V F++ +AN AI ++NG + ++++Y ++ DR A +TN+F+
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYRAAEVRTRDR------ATFTNVFV 194
Query: 196 KNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSV 255
KN D+ +E L + FS++G S+ + RD +G S+GFGFV ++ + A++A+ ++G
Sbjct: 195 KNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKS 254
Query: 256 IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS 315
I KVLY RAQKK ER LR +FE R + + G VY+KN+D+ + DE+LK FS
Sbjct: 255 IDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPVYIKNLDETIDDEKLKEEFS 314
Query: 316 QCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
G+I+ AKVM E G KGFG VC+SS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 315 SFGSISRAKVMV-EVGQGKGFGVVCYSSFEEATKAVDEMNGRIMGSKPLHVTLGQ 368
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 121/237 (51%), Gaps = 23/237 (9%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y A + +R +NV+VKN DD+ DE+LK FS+ G
Sbjct: 175 VYRAAEVRTRDRATF------------------TNVFVKNFGDDMDDEKLKDIFSEYGPT 216
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 217 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 273
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 97/181 (53%), Gaps = 20/181 (11%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T +++V + D+ D +L D FSE+ SV+V +D+ +G+S +G+V + + A +
Sbjct: 187 ATFTNVFVKNFGDDMDDEKLKDIFSEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQK 245
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPD-----------------ARKSGVANLFVKNLIESI 111
A+ + + GK+L + + + + +R GV +++KNL E+I
Sbjct: 246 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-VYIKNLDETI 304
Query: 112 DNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIY 171
D+ +L+E F +FG+I KV E G+ KG G V + + E A A++ +NG +G K ++
Sbjct: 305 DDEKLKEEFSSFGSISRAKVMV-EVGQGKGFGVVCYSSFEEATKAVDEMNGRIMGSKPLH 363
Query: 172 V 172
V
Sbjct: 364 V 364
>gi|330843410|ref|XP_003293648.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
gi|325076001|gb|EGC29827.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
Length = 735
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 151/368 (41%), Positives = 215/368 (58%), Gaps = 22/368 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEF--KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
SLYVGDL DV + L + FS+ ++AS+ VC+DS T RS Y YVNF + HDA RA
Sbjct: 120 TSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDAERA 179
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
++ N++ +HGK RI WS RDP RK+ V N+FVKNL +++DN L ++F +FGNI+SC
Sbjct: 180 LDTLNYSMIHGKPCRIMWSYRDPTKRKTNVGNVFVKNLEKAVDNAMLYDVFSSFGNILSC 239
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
KV E G SKG+G+V FET ES+ AIE +NGT V K I+ F+ K +R K
Sbjct: 240 KVEY-EKGISKGYGYVHFETSESSGKAIERINGTLVLGKPIFCEPFVAKVERY------K 292
Query: 190 YTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
N +F +N D VT+E + E+ SKFG+I + D G S+G G V F N +DA++ L
Sbjct: 293 VENKVFFRNADESVTQEMIQEELSKFGEIEICTLKIDSTGKSKGLGTVEFKNCEDAQKLL 352
Query: 249 EAMNGSV-IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
S+ I K + R + K ER LR K +++ NID+ +
Sbjct: 353 AVEADSIQINGKPITFDRVKNKIERVTELRK-----------KTTDQTLFLSNIDESIEK 401
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E +K FS+ G I K+++DE G NKG+GF+ FS EA+KA+ +G+ K + V+
Sbjct: 402 ETIKEEFSKHGAIIGCKIVQDESGKNKGYGFITFSEVSEANKALEALNGFTFGNKQITVS 461
Query: 368 IAQRKEDR 375
++ KE +
Sbjct: 462 LSSNKEQQ 469
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 101/185 (54%), Gaps = 26/185 (14%)
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGK--IASLLIARDENG-TSRGFGFVNFDNPDDA 244
++ T+L++ +L SDV E L E FSK G+ IAS+ + RD N S G+ +VNF N DA
Sbjct: 117 SQLTSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDA 176
Query: 245 RRALEAMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
RAL+ +N S+I K ++++ R KRK + NV+VKN+
Sbjct: 177 ERALDTLNYSMIHGKPCRIMWSYRDPT--------------KRKTNV-----GNVFVKNL 217
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
+ V + L FS G I S KV EKGI+KG+G+V F + E + KA+ +G ++
Sbjct: 218 EKAVDNAMLYDVFSSFGNILSCKV-EYEKGISKGYGYVHFETSESSGKAIERINGTLVLG 276
Query: 362 KPLYV 366
KP++
Sbjct: 277 KPIFC 281
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 124/268 (46%), Gaps = 39/268 (14%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDG---KSKGHGFVQFE 148
P+ + S + +L+V +L ++ V L E+F G + D +S G+ +V F
Sbjct: 112 PNYQPSQLTSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFY 171
Query: 149 TEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS---PAAKYT---NLFMKNLDSDV 202
A A++ LN + + K R++ S P + T N+F+KNL+ V
Sbjct: 172 NNHDAERALDTLNYSMIHGKPC----------RIMWSYRDPTKRKTNVGNVFVKNLEKAV 221
Query: 203 TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY 262
L + FS FG I S + E G S+G+G+V+F+ + + +A+E +NG+++ K ++
Sbjct: 222 DNAMLYDVFSSFGNILSCKVEY-EKGISKGYGYVHFETSESSGKAIERINGTLVLGKPIF 280
Query: 263 AARAQKKAEREQILRHQFEEKRKERILKYKGSN-VYVKNIDDDVTDEELKAHFSQCGTIT 321
K ER YK N V+ +N D+ VT E ++ S+ G I
Sbjct: 281 CEPFVAKVER------------------YKVENKVFFRNADESVTQEMIQEELSKFGEIE 322
Query: 322 SAKVMRDEKGINKGFGFVCFSSPEEASK 349
+ D G +KG G V F + E+A K
Sbjct: 323 ICTLKIDSTGKSKGLGTVEFKNCEDAQK 350
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 135/288 (46%), Positives = 184/288 (63%), Gaps = 1/288 (0%)
Query: 1 MAV-VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVN 59
MAV V +SLYVGDLHP V+D L FSE + S RVC+D T +S YGYVN
Sbjct: 1 MAVTVASQGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVN 60
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
F P A +A+EV N+ L G+ +RI WS RDP RKSG N+F+KNL +SI+ L +
Sbjct: 61 FEDPKHAEQALEVLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDT 120
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FG I+SCK+ E+G+SKG+GFV FE EE A AIE +N + D+ +YVG+FI K+
Sbjct: 121 FSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKT 180
Query: 180 DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
+R + K+ NL++KN + E L E FS+FG+I S + +D G S+GFGFV +
Sbjct: 181 ERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYL 240
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKER 287
+PD A A+ M+G I +VLY ARAQ+K ER++ L+ + E++R ER
Sbjct: 241 DPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAER 288
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 165/296 (55%), Gaps = 29/296 (9%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIE 158
++L+V +L + + LQ F G ++S +V +S G+G+V FE + A A+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPS---PAAKYT---NLFMKNLDSDVTEEHLVEKFS 212
LN + +GR I R++ S P+ + + N+F+KNLD + ++ L + FS
Sbjct: 73 VLNYEPL------MGRPI----RIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFS 122
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FG+I S I DENG S+G+GFV+F+ + A RA+E +N +I +V+Y + K ER
Sbjct: 123 FFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTER 182
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
+ R K K +N+YVKN + +E+LK FS+ G I SA VM+D +G
Sbjct: 183 KSQAR------------KVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGK 230
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMA 388
+KGFGFVC+ P+ A AV T HG + + LY A AQRKE+RQ L+ + + A
Sbjct: 231 SKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRA 286
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 198/608 (32%), Positives = 301/608 (49%), Gaps = 74/608 (12%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
A S++VG L P++ + +L+D F +ASVRVC DS T +S YGYVNF +P DA
Sbjct: 5 AAASPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDSVTQKSLGYGYVNFQNPADAE 64
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
+A++ + +L K +RI+ RDP R+SGV N+ VK L ++D L+EMF +G +
Sbjct: 65 KALD-QAGVKLGTKHIRIAKIQRDPSKRRSGVTNIIVKKLPPTVDTYALKEMFSKYGRLT 123
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
+ +AT E G+S+G+ + +E EESA A+ LNG ++ D I V R+
Sbjct: 124 AIGLATDEKGESRGYARISYEKEESAVDAVRELNGVSIDDCAITVERYQPHHRE---EQL 180
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG-TSRGFGFVNFDNPDDARR 246
+YTNL++KNLD V +E L E FS FG++ S + RD G + GFG+V + + A +
Sbjct: 181 KQYTNLYVKNLDPSVDDEKLKEVFSPFGEVTSAKV-RDLAGRPTVGFGYVAYATHEAAAK 239
Query: 247 ALEAMNG-----SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
A+E ++ + G K+ ++ + + R + E +++ K N+YVKN
Sbjct: 240 AVEELDDKESPLAKEGMKLSVCRFRSREERKRERERLRRERQQQHS----KYPNLYVKNF 295
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG-YML 359
DD VT E LKA F G S VM D+ +++ FGFV F A++A+ HG L
Sbjct: 296 DDTVTSERLKALFDPFGETVSVSVMMDKATKVSRCFGFVSFKEQSSAAQAIQELHGSTAL 355
Query: 360 HRKPLYVAIAQRKEDRQAHLQ-LQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVP 418
+PL+V+ A RK+ R+ L+ ++ Q + P L + PP + +
Sbjct: 356 GPRPLFVSYALRKDARRQTLEDMRNKQPRMRQPPMGGLMGGMMGPQLSFMNPPAMFN--- 412
Query: 419 PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNR--QNRGRMNGNMLPQVGA 476
G+ + + G P RP + P P+N R R M M PQ +
Sbjct: 413 ---GMHFMNTRMPMMPSTMGMGGPMRP---MGPTPMNQVRARPGPQRPPMQSMMAPQQQS 466
Query: 477 HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDML 536
H +I + G +L T
Sbjct: 467 H-----------------------------PQIPQPPVAQGQNLST-------------- 483
Query: 537 NGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
+LA+ +P+QQK +LGERLY + ++ P AK+TGMLLEMDNSE+L LL++ L K
Sbjct: 484 --VLASMTPDQQKNVLGERLYNYIVRNNPSFAAKVTGMLLEMDNSEILNLLDNHSLLDTK 541
Query: 597 VEEAVQVL 604
V+EA+ VL
Sbjct: 542 VQEALDVL 549
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 132/273 (48%), Positives = 186/273 (68%), Gaps = 4/273 (1%)
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAA 188
VA E+ SKG+GFV FETEESA AIE +NG + K++YVG+F ++ R+ + A
Sbjct: 1 VANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETAR 60
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
++TN+++KN ++ +E L + FSKFGKI S + D +G S+GFGFV F+NP+DA +A+
Sbjct: 61 RFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAV 120
Query: 249 EAMNGSVI--GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
M+ + + LY RAQKK ER L+ ++E+++ ER+ +Y+G N+YVKN+DD V
Sbjct: 121 TEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVN 180
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
D+ LK +F G ITSAKVM D+ G +KGFGFVCF P+EA+KAV +G M+ KPLYV
Sbjct: 181 DDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV 240
Query: 367 AIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIP 399
A+AQRKEDR+A L QY Q +A I +A +P
Sbjct: 241 ALAQRKEDRKAQLASQYMQRLASIRMHNAGSMP 273
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 138/255 (54%), Gaps = 26/255 (10%)
Query: 52 STCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS-WSCRDPDARKSG-----VANLFVK 105
S YG+V+F + A +AIE N L GK + + + R R+ G N+++K
Sbjct: 9 SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIK 68
Query: 106 NLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN---- 161
N + +D L+++F FG I S V DGKSKG GFV FE E A A+ ++
Sbjct: 69 NFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYEL 128
Query: 162 -GTTVGDKRIYVGRFIKKSDR------------VLPSPAAKYTNLFMKNLDSDVTEEHLV 208
GT ++++YV R KK++R V + NL++KNLD V ++ L
Sbjct: 129 PGT---ERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILK 185
Query: 209 EKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268
+ F +GKI S + D+NG S+GFGFV F+ PD+A +A+ MNG ++ +K LY A AQ+
Sbjct: 186 QNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQR 245
Query: 269 KAEREQILRHQFEEK 283
K +R+ L Q+ ++
Sbjct: 246 KEDRKAQLASQYMQR 260
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 28/214 (13%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TA ++Y+ + ++ L FS+F + S V D+ G+S +G+V F +P DA
Sbjct: 58 TARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDAD-GKSKGFGFVAFENPEDA 116
Query: 67 IRAIEVKNHTQLHGKMLRISWSCR--------------------DPDARKSGVANLFVKN 106
+A+ + +L G ++ + CR + R GV NL+VKN
Sbjct: 117 EKAVTEMHEYELPGTERKL-YVCRAQKKNERSAELKRRYEQQKVERMQRYQGV-NLYVKN 174
Query: 107 LIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG 166
L +++++ L++ F+ +G I S KV ++G+SKG GFV FE + A A+ +NG +
Sbjct: 175 LDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMC 234
Query: 167 DKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
K +YV +K DR A+ + +M+ L S
Sbjct: 235 TKPLYVALAQRKEDR-----KAQLASQYMQRLAS 263
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEK--HKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
MLA P++QKQ+LGER+YPL+E+ PD V KITGM+LEMDNSELL++LE+ E L K
Sbjct: 445 MLAQALPQEQKQMLGERIYPLIERIYQGPD-VGKITGMMLEMDNSELLMMLENEELLQSK 503
Query: 597 VEEAVQVLKLSEAK 610
V EA VL S+ +
Sbjct: 504 VSEAASVLASSKGQ 517
>gi|111226286|ref|XP_001134510.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|122096694|sp|Q1ZXC2.1|PAP1B_DICDI RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein, cytoplasmic 1-B
gi|90970453|gb|EAS66827.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 814
Score = 261 bits (667), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 156/396 (39%), Positives = 226/396 (57%), Gaps = 42/396 (10%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEF--KSLASVRVCKDSTTGRSTCYGYVN 59
A PP T SLYVGDL DV + L + FS+ ++AS+ VC+DS T RS Y YVN
Sbjct: 176 AYQPPHQLT--SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVN 233
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
F + HDA RA++ N+T +HGK RI WS RDP RK+ V N+FVKNL + +DN L +
Sbjct: 234 FFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDT 293
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F +FGNI+SCKV E G SKG+G+V FET +SA AIE +NGT + K I V RF+ K
Sbjct: 294 FSSFGNILSCKVEF-EKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKV 352
Query: 180 DRVLPSPAAKYTN-LFMKNLDSDVTEEHLVEKFS-KFGKIASLLIARDENGTSRGFGFVN 237
+R K N +F +N D +T E L ++ S +FG+I S ++ D NG S+G G V
Sbjct: 353 ERY------KVENKVFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVE 406
Query: 238 FDNPDDARRAL--------EAMNGSV----------IGSKVLYAARAQKKAEREQILRHQ 279
F N +DA++ L ++G+ I K + R + K ER
Sbjct: 407 FKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVER------- 459
Query: 280 FEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFV 339
F E RK K ++++ NID+ + + +K F++ GTI K+++DE NKGFGF+
Sbjct: 460 FTEYRK----KTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFI 515
Query: 340 CFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
FS +EA KA+++ +G+ K + V+ + + ++
Sbjct: 516 SFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQ 551
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 261 bits (666), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 149/346 (43%), Positives = 214/346 (61%), Gaps = 5/346 (1%)
Query: 28 LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87
L+ F L R+C+D T YGYVNF P DA A+ N ++GK R+ W
Sbjct: 2 LYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMW 61
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQF 147
S D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV ++G SKG+ +V F
Sbjct: 62 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHF 120
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTNLFMKNLDSDVTE 204
++ +AN AI ++NG + ++++YVGRF +R V A +TN+F+KN+ D+ +
Sbjct: 121 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDD 180
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+ ++G I KVLY
Sbjct: 181 EKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 240
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK 324
RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK FS G+I+ AK
Sbjct: 241 RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAK 300
Query: 325 VMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
VM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 301 VMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 345
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 126/237 (53%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 28 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 83
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 84 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 142
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER E + ++R +NV+VKNI DD+ DE+LK F + G
Sbjct: 143 VYVGRFKFPEERAA------EVRTRDRA---TFTNVFVKNIGDDIDDEKLKELFCEYGPT 193
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 194 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 250
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 159/415 (38%), Positives = 233/415 (56%), Gaps = 25/415 (6%)
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
+E+ N +L GK +RI +S RDP R SG N+FVKNL ESIDN +L +MF FG ++SC
Sbjct: 1 MEMLNFYKLKGKPMRIMFSERDPSKRLSGRGNVFVKNLDESIDNKQLSDMFSAFGKVLSC 60
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
KV G SKG+GFVQF +E S N A NGT + ++ I+V F+ + +
Sbjct: 61 KVVRDASGVSKGYGFVQFYSELSVNIACNVRNGTLIRNQHIHVSPFVSRRQW---DESRV 117
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL T++ L F +FG+I S ++ +D+ G SR FGFVNF+ + A A++
Sbjct: 118 FTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAID 177
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKY-KGSNVYVKNIDDDVTDE 308
MNG+++ K L+ RAQ+K R Q L+ F+ ++ +R +K KG+N+YVKN+D V +
Sbjct: 178 KMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDNT 237
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+L+ FS+ GTI S KVM I+KG GFV FS+ EEASKA+ +G ++ KP+YV++
Sbjct: 238 KLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVSL 297
Query: 369 AQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
AQ KE+ + HL Q+ + S+ P +P PP + P M +
Sbjct: 298 AQCKEEHKLHLHTQFNNLPWNVVSSTIAPSPHQHPIFSQAWPPMSI------PNTMQRVY 351
Query: 429 GLRT----GWRANGFVPP-TRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHY 478
++ G R + PP + P F V P P P P VG HY
Sbjct: 352 NFQSYFMCGSRMSNSCPPMSMPNFMV-PQPFRPTIYPH---------APPVGLHY 396
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 150/283 (53%), Gaps = 15/283 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V +L + + +L D FS F + S +V +D++ G S YG+V F S A
Sbjct: 31 GNVFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDAS-GVSKGYGFVQFYSELSVNIACN 89
Query: 72 VKNHTQLHGKMLRIS-WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
V+N T + + + +S + R N++VKNL E+ + L+ +F+ FG I S
Sbjct: 90 VRNGTLIRNQHIHVSPFVSRRQWDESRVFTNVYVKNLAETTTDDDLKMIFEEFGEITSAV 149
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV-------- 182
V ++GKS+ GFV FE E+A AI+ +NGT V +K ++VGR +K +R+
Sbjct: 150 VMKDKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHVGRAQRKKNRIQDLKVIFK 209
Query: 183 -----LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVN 237
K TNL++KNLD V L E FS+FG I S + N S+G GFV
Sbjct: 210 LEKIKRDMKTRKGTNLYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRISKGVGFVE 269
Query: 238 FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
F ++A +A+ MNG V+G+K +Y + AQ K E + L QF
Sbjct: 270 FSTSEEASKAMLKMNGKVVGNKPIYVSLAQCKEEHKLHLHTQF 312
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 123/246 (50%), Positives = 173/246 (70%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDLH V D +LFD FS+ + SVRVC+D + +S Y YVN+ + DA RA+E+
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T ++GK +RI +S RDP +RKSG N+F+KNL +SIDN L + F FGNI+SCK+A
Sbjct: 96 LNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIA 155
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
T G+S+G+GFVQFE +ESA +AI+ LNG + DK+++VG F++K DR S K++N
Sbjct: 156 TDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNIKFSN 215
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL VT++ L E F K+G I S ++ RD +G SR FGFVNF+N D A +A++ +N
Sbjct: 216 VYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELN 275
Query: 253 GSVIGS 258
V+ S
Sbjct: 276 DGVVSS 281
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 141/251 (56%), Gaps = 17/251 (6%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDG-KSKGHGFVQFETEESANAAIENL 160
L+V +L ES+ + +L ++F G ++S +V + KS G+ +V + + A A+E L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASL 220
N T + K I I S+R S + N+F+KNLD + + L + F FG I S
Sbjct: 97 NFTPINGKPIR----IMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSC 152
Query: 221 LIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
IA D +G SRG+GFV F+ + A+ A++ +NG +I K ++ +K +RE + +
Sbjct: 153 KIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSN-- 210
Query: 281 EEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVC 340
K SNVYVKN+ D VTD+ELK F + GTITSA VMRD G ++ FGFV
Sbjct: 211 ----------IKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVN 260
Query: 341 FSSPEEASKAV 351
F + + A++AV
Sbjct: 261 FENADAAAQAV 271
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 23/190 (12%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG-TSRGFGFVNFDNPDDARRALE 249
T+L++ +L V + L + FS+ G + S+ + RD N S G+ +VN++N DA RALE
Sbjct: 35 TSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALE 94
Query: 250 AMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + I K ++Y+ R K N+++KN+D +
Sbjct: 95 LLNFTPINGKPIRIMYS-------------------NRDPSSRKSGTGNIFIKNLDKSID 135
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
++ L F G I S K+ D G ++G+GFV F E A A++ +G +++ K ++V
Sbjct: 136 NKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFV 195
Query: 367 AIAQRKEDRQ 376
RK+DR+
Sbjct: 196 GPFVRKQDRE 205
>gi|281204064|gb|EFA78260.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 617
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 156/418 (37%), Positives = 228/418 (54%), Gaps = 49/418 (11%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEF--KSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
A+ SLYVGDL PDV + L + FS+ ++AS+ VC+DS T RS Y YVNF + D
Sbjct: 134 ASQYTSLYVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRSLGYAYVNFFNSID 193
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A RA++ N++Q+ G+ RI WS RDP RKS V N+FVKNL + +DN L + F FGN
Sbjct: 194 AERALDTLNYSQIMGRPCRIMWSLRDPTKRKSNVGNIFVKNLDKQVDNAMLFDTFSKFGN 253
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCK+ E G SKG+G+V FET+ES++ AI+ +NGT + K I V +F+ K +R
Sbjct: 254 ILSCKIEY-EKGVSKGYGYVHFETQESSDRAIQGVNGTMLCGKPITVEQFVSKVERFKEK 312
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
K LF+KN+D T E L + S+FG+I S +I D NG S+G GFV F + +DA+
Sbjct: 313 NEHK---LFIKNIDELATVEQLQAELSRFGEIESCIIRLDNNGKSKGLGFVEFKSVEDAQ 369
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAER----EQILRHQFEEKRKERILKYKGS------- 294
R ++ I SK + R + K ER QI + Q S
Sbjct: 370 RLMDNPEPIQILSKPITIDRIKNKMERNIEHRQIKQQQANGNPNNNNNVVNNSTAPTVAA 429
Query: 295 ------------------------------NVYVKNIDDDVTDEELKAHFSQCGTITSAK 324
+++ NID+ + E ++ F++ GTI K
Sbjct: 430 TTTTTTTTVDSNGNPTNSSNNNNSVAPTNLTLFIHNIDESIDKEVIREEFAKHGTILGIK 489
Query: 325 VMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQ 382
+++ E G N+GFGF+ +S+ EEA+ A+ +G++L KPL V+ + RK ++ QLQ
Sbjct: 490 IVQ-ENGKNRGFGFLSYSTQEEANIAIEKMNGFILGSKPLSVSFSNRKYKKRMQ-QLQ 545
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 144/295 (48%), Gaps = 28/295 (9%)
Query: 97 SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDG---KSKGHGFVQFETEESA 153
S +L+V +L ++ + L E+F G + D +S G+ +V F A
Sbjct: 135 SQYTSLYVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRSLGYAYVNFFNSIDA 194
Query: 154 NAAIENLNGTTVGDKRIYVGR--FIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF 211
A++ LN + + +GR I S R + N+F+KNLD V L + F
Sbjct: 195 ERALDTLNYSQI------MGRPCRIMWSLRDPTKRKSNVGNIFVKNLDKQVDNAMLFDTF 248
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
SKFG I S I E G S+G+G+V+F+ + + RA++ +NG+++ K + + K E
Sbjct: 249 SKFGNILSCKIEY-EKGVSKGYGYVHFETQESSDRAIQGVNGTMLCGKPITVEQFVSKVE 307
Query: 272 REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG 331
R F+EK + ++ ++KNID+ T E+L+A S+ G I S + D G
Sbjct: 308 R-------FKEKNEHKL--------FIKNIDELATVEQLQAELSRFGEIESCIIRLDNNG 352
Query: 332 INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA-HLQLQYAQ 385
+KG GFV F S E+A + ++ + KP+ + + K +R H Q++ Q
Sbjct: 353 KSKGLGFVEFKSVEDAQRLMDNPEPIQILSKPITIDRIKNKMERNIEHRQIKQQQ 407
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 184/468 (39%), Positives = 241/468 (51%), Gaps = 83/468 (17%)
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E F +FG+I S + DENG S+GFGFV F + + A A++A+NG + + LY RA
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 267 QKKAEREQILRHQFEEKRKERILKY-KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
QKK ER LR FE++R ER +Y +G N+YVKN+DD + D LK F G ITSAKV
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
M D +KGFGFVCFS+PEEA+KAV +G + KPLYVA+AQRKEDR+AHL QY Q
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQ 189
Query: 386 HMAGIEGSSANVI---------PSGYPSL--YYTTP----PGIVSQ----VPPRP----- 421
+ + N + P G PS+ Y P P + +Q +PP+
Sbjct: 190 RVNPHRNNYPNQVSVNTLISGGPPGGPSILPYAFAPNASTPRVYTQSAAFMPPQNRWSNR 249
Query: 422 ----------GLMYQ--------------PLGLRT-GWRAN-----GFVPPTRPAFQVSP 451
G M Q P+ T G +AN +P RP
Sbjct: 250 MHPSQLQFNGGNMRQLANAHFGNMEGSSVPIQNNTMGMQANQIRQVSMIPNQRPMLS--- 306
Query: 452 LPVNPKHNRQNRGRMNG----------NMLPQVGAHYMQQSSQSAASSKDSSNQ---QKG 498
N + + MNG N P G S S S + NQ Q
Sbjct: 307 ---NNANVSASNVMMNGVANTVKSAPQNSRPITGVQMPITSQASNISQQRPPNQPTRQIT 363
Query: 499 GQSKYVPNGRI-RELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLY 557
GQS N + R +N GS SG + +P ++ + +AP E QKQ+LGERLY
Sbjct: 364 GQSVISGNQNVNRPINNGS----NQLVSGNL---EPLTISTLASAPIAE-QKQMLGERLY 415
Query: 558 PLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
PLV + P+L KITGMLLE+DN+ELL +LES +SL K+EEA+ VL+
Sbjct: 416 PLVHRMYPELAGKITGMLLEIDNTELLHMLESEDSLTTKIEEAMNVLQ 463
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 112/182 (61%), Gaps = 13/182 (7%)
Query: 115 RLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGR 174
+L+EMF FG I S KV E+GKSKG GFV F+ E+A +A++ LNG D+++YVGR
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGR 68
Query: 175 FIKKSDRV----------LPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
KK++R+ +++YT NL++KNLD + + L ++F FG I S
Sbjct: 69 AQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAK 128
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE 281
+ D N S+GFGFV F NP++A +A+ MNG + GSK LY A AQ+K +R+ L Q+
Sbjct: 129 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 188
Query: 282 EK 283
++
Sbjct: 189 QR 190
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 18/172 (10%)
Query: 27 ELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86
+L + F EF + S +V D G+S +G+V F A A++ N + L +
Sbjct: 9 KLREMFLEFGEITSAKVMIDEN-GKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVG 67
Query: 87 WSCR-----------------DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
+ + + +R + NL+VKNL +SID+ RL++ F FGNI S
Sbjct: 68 RAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSA 127
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
KV T + +SKG GFV F E A A+ +NG G K +YV +K DR
Sbjct: 128 KVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDR 179
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 47/80 (58%)
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+L+ F + G ITSAKVM DE G +KGFGFVCF E A AV +G M + LYV
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGR 68
Query: 369 AQRKEDRQAHLQLQYAQHMA 388
AQ+K +R L+ + + A
Sbjct: 69 AQKKNERLDELRSHFEKQRA 88
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 125/254 (49%), Positives = 171/254 (67%), Gaps = 5/254 (1%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
++PP+ +T ASLYVGDL DVT+ L++ F+ + S+RVC+DS T +S Y YVN+ +
Sbjct: 8 IMPPSFST-ASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
DA RA++ N+T + G+ R+ WS RDP RKSG N+FVKNL ++IDN L + F
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSM 126
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGNI+SCKVAT E GKSK +GFV +E EESA AIE +NG +G K +YVG FIKKS+R
Sbjct: 127 FGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERA 186
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ K+TNL++KN VTE HL E FS +G+I S+++ D +R F F+N+ + D
Sbjct: 187 --TNDTKFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIVKSD--NKNRKFCFINYSDAD 242
Query: 243 DARRALEAMNGSVI 256
AR A+E +NG I
Sbjct: 243 SARNAMENLNGKKI 256
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 126/399 (31%), Positives = 195/399 (48%), Gaps = 34/399 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V +L + + LFD FS F ++ S +V D G+S YG+V++ A AIE
Sbjct: 104 GNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEF-GKSKNYGFVHYEDEESAKEAIE 162
Query: 72 VKNHTQLHGKMLRISWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
N QL K + + + + + NL+VKN +++ L+E+F +G I S
Sbjct: 163 KVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKELFSPYGEITSM 222
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG-DKRIYVGRFIKKSDRVLPSPAA 188
V + D K++ F+ + +SA A+ENLNG + D +I KK + A
Sbjct: 223 IVKS--DNKNRKFCFINYSDADSARNAMENLNGKKITEDGKIDHNYDPKKEE------AE 274
Query: 189 KYTNLFMKNLDSD---VTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
K N N S+ T E EK + + E+ TS + DA+
Sbjct: 275 KAANENSNNTTSEENAATSETPAEKKTDSESATNKDATTGEDQTSANGTTTTVTSTTDAK 334
Query: 246 RALEAMNGSVIGS------------------KVLYAARAQKKAEREQILRHQFEEKRKER 287
EA N S + +LY Q +A R +L+ +F+ E
Sbjct: 335 TE-EATNDSTANAATAEKKDSKKSGESTETPNILYVGPHQSRARRHALLKAKFDTLNTES 393
Query: 288 ILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEA 347
K+ G N+Y+KN+DD + D+ LK F GTITSAKVM+D+K +KGFGFVCF + EEA
Sbjct: 394 RNKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEA 453
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQH 386
+KAV H +++ KPLYV +A+++E R + LQ ++ H
Sbjct: 454 NKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRMH 492
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 24/205 (11%)
Query: 175 FIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGF 233
I S ++P P+ +L++ +L DVTE L E F+ G + S+ + RD S G+
Sbjct: 1 MIANSTNIMP-PSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGY 59
Query: 234 GFVNFDNPDDARRALEAMNGSVIG---SKVLYAARAQKKAEREQILRHQFEEKRKERILK 290
+VN+ N DA RAL+ +N + I ++++++ R+ LR K
Sbjct: 60 AYVNYHNLADAERALDTLNYTNIKGQPARLMWS-------HRDPSLR------------K 100
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
N++VKN+D + ++ L FS G I S KV DE G +K +GFV + E A +A
Sbjct: 101 SGTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEA 160
Query: 351 VNTFHGYMLHRKPLYVAIAQRKEDR 375
+ +G L K +YV +K +R
Sbjct: 161 IEKVNGMQLGSKNVYVGHFIKKSER 185
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 165/398 (41%), Positives = 234/398 (58%), Gaps = 34/398 (8%)
Query: 225 DENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKR 284
D++G SRGFGFV+F+ +DA++A NG + + + QKK ER+ L+ +FE+ +
Sbjct: 3 DDSGKSRGFGFVSFERHEDAQKAD---NGFLKENWI------QKKVERQAELKRKFEQMK 53
Query: 285 KERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSP 344
++R+ +Y+G N+YVKN+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSP
Sbjct: 54 QDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVML-EGGRSKGFGFVCFSSP 112
Query: 345 EEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPS 404
EEA+KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA S +P+ +
Sbjct: 113 EEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMA-----SVRAVPNPVIN 167
Query: 405 LYYTTPPG--IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQN 462
Y PP ++ +P Q + A G + RP+ + V P+H +
Sbjct: 168 PYQPAPPSGYFMTAIP-------QTQNRGAYYPAAGQMAQLRPSPRWPTQGVRPQHFQNM 220
Query: 463 RGRMNGNM-LPQVGAHYMQQSSQ--SAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVS 519
+ M + PQ+ M+ SSQ SS+ + Q G ++ N GVS
Sbjct: 221 QSAMRSSAPRPQMFGS-MRPSSQLPRMTSSQRVATQAMGPRAATTAPSVT--ANPVRGVS 277
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ +GG + + MLAA +QKQ+LGERL+PL++ L KITGMLLE+D
Sbjct: 278 QYKYATGG----QEPLTTSMLAAAPLHEQKQMLGERLFPLIQAMHLSLAGKITGMLLEID 333
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
NSELL +LESPESL KV+EAV VL+ +AK + Q+++
Sbjct: 334 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSV 371
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 4/154 (2%)
Query: 133 TSEDGKSKGHGFVQFETEESANAAIEN-LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY- 190
T + GKS+G GFV FE E A A L + K +K +++ +Y
Sbjct: 2 TDDSGKSRGFGFVSFERHEDAQKADNGFLKENWIQKKVERQAELKRKFEQMKQDRMTRYQ 61
Query: 191 -TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
NL++KNLD + +E L ++FS FG I S + E G S+GFGFV F +P++A +A+
Sbjct: 62 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVML-EGGRSKGFGFVCFSSPEEATKAVT 120
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 121 EMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 154
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 21/163 (12%)
Query: 49 TGRSTCYGYVNFLSPHDAIRA-----------IEVKNHTQLHGKMLRISWSCRDPDARKS 97
+G+S +G+V+F DA +A +V+ +L K ++ +D R
Sbjct: 5 SGKSRGFGFVSFERHEDAQKADNGFLKENWIQKKVERQAELKRKFEQMK---QDRMTRYQ 61
Query: 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAI 157
GV NL+VKNL + ID+ RL++ F FG I S KV E G+SKG GFV F + E A A+
Sbjct: 62 GV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVML-EGGRSKGFGFVCFSSPEEATKAV 119
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
+NG V K +YV +K +R A TN +M+ + S
Sbjct: 120 TEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMAS 157
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 124/254 (48%), Positives = 171/254 (67%), Gaps = 5/254 (1%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
++PP+ +T ASLYVGDL DVT+ L++ F+ + S+RVC+DS T +S Y YVN+ +
Sbjct: 8 IMPPSFST-ASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
DA RA++ N+T + G+ R+ WS RDP RKSG N+FVKNL ++IDN L + F
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSM 126
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGNI+SCKVAT E GKSK +GFV +E EESA AIE +NG +G K +YVG FIKKS+R
Sbjct: 127 FGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERA 186
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ K+TNL++KN VTE HL + FS +G+I S+++ D +R F F+N+ + D
Sbjct: 187 --TNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIVKSD--NKNRKFCFINYSDAD 242
Query: 243 DARRALEAMNGSVI 256
AR A+E +NG I
Sbjct: 243 SARNAMENLNGKKI 256
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 196/396 (49%), Gaps = 27/396 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V +L + + LFD FS F ++ S +V D G+S YG+V++ A AIE
Sbjct: 104 GNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEF-GKSKNYGFVHYEDEESAKEAIE 162
Query: 72 VKNHTQLHGKMLRISWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
N QL K + + + + + NL+VKN +++ L+++F +G I S
Sbjct: 163 KVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSM 222
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
V + D K++ F+ + +SA A+ENLNG + + + K + +
Sbjct: 223 IVKS--DNKNRKFCFINYSDADSARNAMENLNGKKITEDGKIDYNYDPKKEESEKAANEN 280
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIAR-DENGTSRGFGFVNFDNPDDARR-- 246
Y N + ++ T E EK + + A+ A E+ TS + DA+
Sbjct: 281 YNNNNTTSEENATTSETPAEKKTTDSESATNKDATPGEDQTSANGTTTTVTSTTDAKTEE 340
Query: 247 ------ALEAMNGSVIGSK-------------VLYAARAQKKAEREQILRHQFEEKRKER 287
A +N S+ K +LY Q +A R IL+ +F+ E
Sbjct: 341 TPNDNTANAGINASITEKKDKKKSGESTETPNILYVGPHQSRARRHAILKAKFDTLNTES 400
Query: 288 ILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEA 347
K+ G N+Y+KN+DD + D+ LK F GTITSAKVM+D+K +KGFGFVCF + EEA
Sbjct: 401 RNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEA 460
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+KAV H +++ KPLYV +A+++E R + LQ ++
Sbjct: 461 NKAVTEMHLKIINGKPLYVGLAEKREHRLSRLQQRF 496
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 18/202 (8%)
Query: 175 FIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGF 233
I S ++P P+ +L++ +L DVTE L E F+ G + S+ + RD S G+
Sbjct: 1 MIANSTNIMP-PSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGY 59
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
+VN+ N DA RAL+ +N + I K + +++ R + K
Sbjct: 60 AYVNYHNLADAERALDTLNYTNI------------KGQPARLMWSH----RDPSLRKSGT 103
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
N++VKN+D + ++ L FS G I S KV DE G +K +GFV + E A +A+
Sbjct: 104 GNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEK 163
Query: 354 FHGYMLHRKPLYVAIAQRKEDR 375
+G L K +YV +K +R
Sbjct: 164 VNGMQLGSKNVYVGHFIKKSER 185
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 46/58 (79%)
Query: 548 QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
QKQ+LGE L+PLV + P L KITGM+LEMDNSELL+LLE+ + L K++EA+ VL+
Sbjct: 773 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEDQLKKKIDEALVVLQ 830
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 124/254 (48%), Positives = 171/254 (67%), Gaps = 5/254 (1%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
++PP+ +T ASLYVGDL DVT+ L++ F+ + S+RVC+DS T +S Y YVN+ +
Sbjct: 8 IMPPSFST-ASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
DA RA++ N+T + G+ R+ WS RDP RKSG N+FVKNL ++IDN L + F
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSM 126
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGNI+SCKVAT E GKSK +GFV +E EESA AIE +NG +G K +YVG FIKKS+R
Sbjct: 127 FGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERA 186
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ K+TNL++KN VTE HL + FS +G+I S+++ D +R F F+N+ + D
Sbjct: 187 --TNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIVKSD--NKNRKFCFINYSDAD 242
Query: 243 DARRALEAMNGSVI 256
AR A+E +NG I
Sbjct: 243 SARNAMENLNGKKI 256
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 204/428 (47%), Gaps = 46/428 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V +L + + LFD FS F ++ S +V D G+S YG+V++ A AIE
Sbjct: 104 GNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEF-GKSKNYGFVHYEDEESAKEAIE 162
Query: 72 VKNHTQLHGKMLRISWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
N QL K + + + + + NL+VKN +++ L+++F +G I S
Sbjct: 163 KVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSM 222
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG-DKRIYVGRFIKKSDRVLPS--- 185
V + D K++ F+ + +SA A+ENLNG + D +I KK + P+
Sbjct: 223 IVKS--DNKNRKFCFINYSDADSARNAMENLNGKKITEDGKIDYNYDPKKEETEKPANEN 280
Query: 186 ----------------PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGT 229
PA K T + D T ++ S G ++ D N
Sbjct: 281 SNNNTTTEENTTTSETPAEKKTPDSEPATNKDATPGE--DQTSANGTTTTVTSTTDANPD 338
Query: 230 SRGFGFVNFDNPDDARRALEAMNGSVIGSK-------------VLYAARAQKKAEREQIL 276
S+ + P+D A N S K +LY Q +A R IL
Sbjct: 339 SK-----TEETPND-NTANAGTNASTTEKKDNKKSGENTETPNILYVGPHQSRARRHAIL 392
Query: 277 RHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF 336
+ +F+ E K+ G N+Y+KN+DD + D+ LK F GTITSAKVM+D+K +KGF
Sbjct: 393 KAKFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGF 452
Query: 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSAN 396
GFVCF + EEA+KAV H +++ KPLYV +A+++E R + LQ ++ H ++A
Sbjct: 453 GFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRFRMHPIRHHINNAL 512
Query: 397 VIPSGYPS 404
P YP+
Sbjct: 513 NAPIQYPN 520
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 18/202 (8%)
Query: 175 FIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGF 233
I S ++P P+ +L++ +L DVTE L E F+ G + S+ + RD S G+
Sbjct: 1 MIANSTNIMP-PSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGY 59
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
+VN+ N DA RAL+ +N + I K + +++ R + K
Sbjct: 60 AYVNYHNLADAERALDTLNYTNI------------KGQPARLMWSH----RDPSLRKSGT 103
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
N++VKN+D + ++ L FS G I S KV DE G +K +GFV + E A +A+
Sbjct: 104 GNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEK 163
Query: 354 FHGYMLHRKPLYVAIAQRKEDR 375
+G L K +YV +K +R
Sbjct: 164 VNGMQLGSKNVYVGHFIKKSER 185
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 43/54 (79%)
Query: 548 QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAV 601
QKQ+LGE L+PLV + P L KITGM+LEMDNSELL+LLE+ + L K++EA+
Sbjct: 781 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEDQLKKKIDEAL 834
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 198/326 (60%), Gaps = 9/326 (2%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVN 59
+ V+ P T GDL V +G+L+ FSEF ++SV+VC D TG S YGYVN
Sbjct: 6 IVVLKPALTVRG----GDLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVN 61
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
F A A+EV N+ +L GK +RI +S RDP R SG N+FVKNL ESIDN +L +M
Sbjct: 62 FNHSSQAKTAMEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDM 121
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FG ++SCKVA G SKG+GFVQF ++ S A NGT + ++ I+V F+ +
Sbjct: 122 FSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRG 181
Query: 180 DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
+ +TN+++KNL T+ L F +FG+I S ++ +D G SR FGFVNF+
Sbjct: 182 Q---WDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFE 238
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKY-KGSNVYV 298
+ A A+E MNG V+ K L+ RAQ+K R + L+ +FE ++ R +K KG N+YV
Sbjct: 239 KAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYV 298
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAK 324
KN+DD V + +L+ FS+ GTITS K
Sbjct: 299 KNLDDSVDNTKLEELFSEFGTITSCK 324
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 145/280 (51%), Gaps = 21/280 (7%)
Query: 106 NLIESIDNVRLQEMFQNFG-NIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGT 163
+L S++ L F F +I S KV + G S G+G+V F A A+E LN
Sbjct: 19 DLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNYC 78
Query: 164 TVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIA 223
+ K + I S+R + + N+F+KNLD + + L + FS FGK+ S +A
Sbjct: 79 KLKGKPMR----IMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVA 134
Query: 224 RDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
RD +G S+G+GFV F + A NG++I ++ ++ + R Q++
Sbjct: 135 RDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVC--------PFVSRGQWD-- 184
Query: 284 RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS 343
K R+ +NVYVKN+ + TD +LK F + G ITSA VM+D +G ++ FGFV F
Sbjct: 185 -KSRVF----TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEK 239
Query: 344 PEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
E A A+ +G ++ K L+V AQRK +R L+ ++
Sbjct: 240 AEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKF 279
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 22/142 (15%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++YV +L TD +L F EF + S V KD G+S +G+VNF A+ AIE
Sbjct: 190 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDG-EGKSRRFGFVNFEKAEAAVTAIE 248
Query: 72 VKNHTQLHGKMLRISWS-------------------CRDPDARKSGVANLFVKNLIESID 112
N + K L + + RD RK NL+VKNL +S+D
Sbjct: 249 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKG--MNLYVKNLDDSVD 306
Query: 113 NVRLQEMFQNFGNIISCKVATS 134
N +L+E+F FG I SCK A +
Sbjct: 307 NTKLEELFSEFGTITSCKYACN 328
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/257 (47%), Positives = 176/257 (68%), Gaps = 7/257 (2%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS+ + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 12 ASLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 72 TMNYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 131
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ +E+G SKG+GFV FETEE+ AIE +NG + DK+++VG+F+ +S+R+ + +
Sbjct: 132 SCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIKKMGERVRQ 190
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN E+ L F K+G + S+ + RD +G SRGFGFV +D+ ++A+ A+E
Sbjct: 191 FTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVE 250
Query: 250 AMNGSVI----GSKVLY 262
AMNG I G ++L+
Sbjct: 251 AMNGQEIEGASGWRLLF 267
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 136/259 (52%), Gaps = 16/259 (6%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 11 MASLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERAL 70
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I I S R + N+F+KNLD + + L + FS FG I
Sbjct: 71 DTMNYDPIKGRPIR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 126
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S ++ +ENG S+G+GFV+F+ + RA+E +NG ++ K ++ + ++ER +
Sbjct: 127 LSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIK--- 182
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
K ER+ ++ +NVY+KN D ++ L+ F + G + S VMRD G ++GFG
Sbjct: 183 -----KMGERVRQF--TNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFG 235
Query: 338 FVCFSSPEEASKAVNTFHG 356
FV + S EEA AV +G
Sbjct: 236 FVAYDSHEEAQAAVEAMNG 254
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 18/177 (10%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L++ +L DVTE L EKFS+ G + S+ + RD S G+ +VNF P DA RAL+
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 72
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
MN I + + +Q R+ LR K N+++KN+D + ++ L
Sbjct: 73 MNYDPIKGRPIRIMWSQ----RDPSLR------------KSGVGNIFIKNLDKSIDNKAL 116
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
FS G I S KV +E G +KG+GFV F + E +A+ +G +L+ K ++V
Sbjct: 117 YDTFSAFGNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVG 172
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FSQ G + S +V RD I + G+ +V F P +A
Sbjct: 9 YPMASLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDV--ITRRSLGYAYVNFQQPADA 66
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + + +P+ + +QR
Sbjct: 67 ERALDTMNYDPIKGRPIRIMWSQR 90
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 154/416 (37%), Positives = 233/416 (56%), Gaps = 31/416 (7%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGE--LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
VVP T S+YVGDL D+ E + + FS + SV+VC+D T RS YGYVNF
Sbjct: 2 VVPVQRT---SVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNF 58
Query: 61 LSPHDAIRAIEVKNHTQLH-GKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
+ DA + I+ N+T + G+ +R+ +S RDP RKSG+ N+FVK L +I+ LQ
Sbjct: 59 QTTADAEKVIDALNYTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAA 118
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F G ++SCKVA G SKG+GFVQFET E A AA+ ++NG+ +GD + V F+++
Sbjct: 119 FTKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAAL-DMNGSKLGDSEVVVAPFVRRV 177
Query: 180 DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
DR + + A + N+++KN+ + TE + KFGK+ SL ++ ++ F V F+
Sbjct: 178 DREVMA-AKSFRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSEHAPFPTK-FALVAFE 235
Query: 240 NPDDARRALEAMN-----GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS 294
+ A +A+ A+N G + L RA K+ER++ E+K+ + + G
Sbjct: 236 EHEAAVQAIAALNESEESGLTEKAAKLVVCRALSKSERDR------EKKKAASLYQNHGR 289
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
N+YVK++ DD+TD+ L+ F G ITS +M++ G KGF FVCF + AS A+ +
Sbjct: 290 NLYVKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSL 349
Query: 355 HGYMLH--RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSS-----ANVIPSGYP 403
+G L +KPLYV+ A++K+ R LQ Q A + S N P +P
Sbjct: 350 NGQPLEHSKKPLYVSHAEQKDMRIRLLQ----QRRAAMRHQSRMVPPMNTFPQQWP 401
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L+ SPEQQK LGE LY + + AKITGMLLEM E+ +L +L K++E
Sbjct: 474 LSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILADHFALLSKIQE 533
Query: 600 AVQVLK 605
A VL+
Sbjct: 534 ANAVLQ 539
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 123/254 (48%), Positives = 172/254 (67%), Gaps = 5/254 (1%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
++ P+ +T ASLYVGDL+ DVT+ L++ F+ ++S+RVC+DS T +S Y YVN+ +
Sbjct: 8 IMHPSFST-ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
DA RA++ N+T + G+ R+ WS RDP RKSG N+FVKNL +SIDN L + F
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSM 126
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGNI+SCKVAT E GKSK +GFV +E EESA AIE +NG +G K +YVG FIKKS+R
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERA 186
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ K+TNL++KN VTE HL E FS +G+I S+++ D +R F F+N+ + +
Sbjct: 187 --TNDTKFTNLYVKNFPDSVTETHLKELFSPYGEITSMIVKTD--NKNRKFCFINYADSE 242
Query: 243 DARRALEAMNGSVI 256
A+ A+E +NG I
Sbjct: 243 SAKNAMENLNGKKI 256
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 92/145 (63%)
Query: 260 VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT 319
+LY Q +A R IL+ +F+ E K++G N+Y+KN+DD + D+ LK F GT
Sbjct: 415 ILYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGT 474
Query: 320 ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
ITSAKVMRD+K +KGFGFVCF+ EEA+KAV H +++ KPLYV +A+++E R + L
Sbjct: 475 ITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRL 534
Query: 380 QLQYAQHMAGIEGSSANVIPSGYPS 404
Q ++ H ++A P YP+
Sbjct: 535 QQRFRMHPIRHHMNNALNSPMQYPN 559
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 129/259 (49%), Gaps = 21/259 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAI 157
A+L+V +L E + L E+F G++ S +V S KS G+ +V + A A+
Sbjct: 15 TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ LN T + + + D L A N+F+KNLD + + L + FS FG I
Sbjct: 75 DTLNYTNIKGQPARL--MWSHRDPSLRKSGA--GNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G S+ +GFV++++ + A+ A+E +NG +GSK +Y KK+ER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERA---- 186
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
K +N+YVKN D VT+ LK FS G ITS V D K N+ F
Sbjct: 187 ----------TNDTKFTNLYVKNFPDSVTETHLKELFSPYGEITSMIVKTDNK--NRKFC 234
Query: 338 FVCFSSPEEASKAVNTFHG 356
F+ ++ E A A+ +G
Sbjct: 235 FINYADSESAKNAMENLNG 253
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 17/191 (8%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L+ DVTE L E F+ G ++S+ + RD S G+ +VN+ N DA
Sbjct: 11 PSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADA 70
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ +N + I K + +++ R + K N++VKN+D
Sbjct: 71 ERALDTLNYTNI------------KGQPARLMWSH----RDPSLRKSGAGNIFVKNLDKS 114
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV DE G +K +GFV + E A +A+ +G L K +
Sbjct: 115 IDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNV 174
Query: 365 YVAIAQRKEDR 375
YV +K +R
Sbjct: 175 YVGHFIKKSER 185
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 5/158 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V +L + + LFD FS F ++ S +V D G+S YG+V++ A AIE
Sbjct: 104 GNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIE 162
Query: 72 VKNHTQLHGKMLRISWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
N QL K + + + + + NL+VKN +S+ L+E+F +G I S
Sbjct: 163 KVNGIQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDSVTETHLKELFSPYGEITSM 222
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD 167
V T D K++ F+ + ESA A+ENLNG + D
Sbjct: 223 IVKT--DNKNRKFCFINYADSESAKNAMENLNGKKITD 258
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
++ PH + + H L K ++ ++ + GV NL++KNL ++ID+ L+E+
Sbjct: 417 YVGPHQS----RARRHAILKAKFDNLNMESKN---KHQGV-NLYIKNLDDAIDDQTLKEL 468
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F+ +G I S KV + +SKG GFV F +E AN A+ ++ + K +YVG K+
Sbjct: 469 FEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKRE 528
Query: 180 DRV 182
R+
Sbjct: 529 QRL 531
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KNLD + ++ L E F +G I S + RD+ S+GFGFV F ++A +A+ M
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEM 509
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQF 280
+ +I K LY A+K+ +R L+ +F
Sbjct: 510 HLKIINGKPLYVGLAEKREQRLSRLQQRF 538
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 548 QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
QKQ+LGE L+PLV + P L KITGM+LEMDNSELL+LLE+ E L K++EA+ VL+
Sbjct: 824 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 881
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/254 (48%), Positives = 172/254 (67%), Gaps = 5/254 (1%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
++ P+ +T ASLYVGDL+ DVT+ L++ F+ ++S+RVC+DS T +S Y YVN+ +
Sbjct: 8 IMHPSFST-ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
DA RA++ N+T + G+ R+ WS RDP RKSG N+FVKNL +SIDN L + F
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSM 126
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGNI+SCKVAT E GKSK +GFV +E EESA AIE +NG +G K +YVG FIKKS+R
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERA 186
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ K+TNL++KN VTE HL + FS FG+I S+++ D +R F F+N+ + +
Sbjct: 187 --TNDTKFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKTDN--KNRKFCFINYADSE 242
Query: 243 DARRALEAMNGSVI 256
A+ A+E +NG I
Sbjct: 243 SAKNAMENLNGKKI 256
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 92/145 (63%)
Query: 260 VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT 319
+LY Q +A R IL+ +F+ E K++G N+Y+KN+DD + D+ LK F GT
Sbjct: 415 ILYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGT 474
Query: 320 ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
ITSAKVMRD+K +KGFGFVCF+ EEA++AV H +++ KPLYV +A+++E R + L
Sbjct: 475 ITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRL 534
Query: 380 QLQYAQHMAGIEGSSANVIPSGYPS 404
Q ++ H ++A P YP+
Sbjct: 535 QQRFRMHPIRHHMNNALNSPMQYPN 559
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 129/259 (49%), Gaps = 21/259 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAI 157
A+L+V +L E + L E+F G++ S +V S KS G+ +V + A A+
Sbjct: 15 TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ LN T + + + D L A N+F+KNLD + + L + FS FG I
Sbjct: 75 DTLNYTNIKGQPARL--MWSHRDPSLRKSGA--GNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G S+ +GFV++++ + A+ A+E +NG +GSK +Y KK+ER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERA---- 186
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
K +N+YVKN D VT+ LK FS G ITS V D K N+ F
Sbjct: 187 ----------TNDTKFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKTDNK--NRKFC 234
Query: 338 FVCFSSPEEASKAVNTFHG 356
F+ ++ E A A+ +G
Sbjct: 235 FINYADSESAKNAMENLNG 253
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 17/191 (8%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L+ DVTE L E F+ G ++S+ + RD S G+ +VN+ N DA
Sbjct: 11 PSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADA 70
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ +N + I K + +++ R + K N++VKN+D
Sbjct: 71 ERALDTLNYTNI------------KGQPARLMWSH----RDPSLRKSGAGNIFVKNLDKS 114
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV DE G +K +GFV + E A +A+ +G L K +
Sbjct: 115 IDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNV 174
Query: 365 YVAIAQRKEDR 375
YV +K +R
Sbjct: 175 YVGHFIKKSER 185
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 5/158 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V +L + + LFD FS F ++ S +V D G+S YG+V++ A AIE
Sbjct: 104 GNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIE 162
Query: 72 VKNHTQLHGKMLRISWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
N QL K + + + + + NL+VKN +S+ L+++F FG I S
Sbjct: 163 KVNGIQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDSVTEAHLKQLFSPFGEITSM 222
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD 167
V T D K++ F+ + ESA A+ENLNG + D
Sbjct: 223 IVKT--DNKNRKFCFINYADSESAKNAMENLNGKKITD 258
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KNLD + ++ L E F +G I S + RD+ S+GFGFV F ++A RA+ M
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEM 509
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQF 280
+ +I K LY A+K+ +R L+ +F
Sbjct: 510 HLKIINGKPLYVGLAEKREQRLSRLQQRF 538
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
++ PH + + H L K ++ ++ + GV NL++KNL ++ID+ L+E+
Sbjct: 417 YVGPHQS----RARRHAILKAKFDNLNMESKN---KHQGV-NLYIKNLDDAIDDQTLKEL 468
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F+ +G I S KV + +SKG GFV F +E AN A+ ++ + K +YVG K+
Sbjct: 469 FEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKRE 528
Query: 180 DRV 182
R+
Sbjct: 529 QRL 531
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 548 QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
QKQ+LGE L+PLV + P L KITGM+LEMDNSELL+LLE+ E L K++EA+ VL+
Sbjct: 823 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 880
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/257 (47%), Positives = 172/257 (66%), Gaps = 3/257 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RV +D T RS Y VNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP R+SGV N+F+KNL ++IDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
+ E+G SKGHGFV FETEE+A AIE +NG + D++++VGRF + +R L + +
Sbjct: 131 VSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN + +E L F +FG+I S+ + DE G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARA 266
MNG + K +Y RA
Sbjct: 250 EMNGKELNGKHIYVGRA 266
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 141/272 (51%), Gaps = 16/272 (5%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F + G I+S +V +S G+ V FE A A+
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K + I S R + N+F+KNL+ + + L + FS FG I
Sbjct: 70 DTMNFDVIKGKPVR----IMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G GFV+F+ + A RA+E MNG ++ + ++ R + + ERE L
Sbjct: 126 LSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELG 184
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+E +NVY+KN D + DE L F + G I S KVM DE G +KGFG
Sbjct: 185 TGTKEF----------TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFG 234
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
FV F E+A KAV+ +G L+ K +YV A
Sbjct: 235 FVSFERHEDAQKAVDEMNGKELNGKHIYVGRA 266
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 103/195 (52%), Gaps = 18/195 (9%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P +L++ +L DVTE L EKFS G I S+ + RD S G+ VNF+ P DA
Sbjct: 6 PGCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADA 65
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN VI K + +Q R+ LR + NV++KN++
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQ----RDPSLR------------RSGVGNVFIKNLNKT 109
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV+ DE G +KG GFV F + E A +A+ +G +L+ + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKV 168
Query: 365 YVAIAQRKEDRQAHL 379
+V + +++R+A L
Sbjct: 169 FVGRFKSQKEREAEL 183
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 150/413 (36%), Positives = 236/413 (57%), Gaps = 24/413 (5%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGE--LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
+V P T S+YVGDL D+ E + + FS + SV+VC+D T RS YGYVNF
Sbjct: 1 MVAPVQRT--SVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNF 58
Query: 61 LSPHDAIRAIEVKNHTQLH-GKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
+P DA + I+ N+T + G+ +R+ +S RDP RKSG+ N+FVK L +++ LQ
Sbjct: 59 QTPADAEKVIDALNYTGITPGRQIRVMFSIRDPIQRKSGMNNVFVKKLDTAVNAKELQAA 118
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F G ++SCKVA G SKG+GFVQFET + A AA+E ++G+ +GD + V F+++
Sbjct: 119 FTKCGRVLSCKVALDSAGNSKGYGFVQFETADGAKAALE-MDGSKLGDCEVVVAPFLRRV 177
Query: 180 DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
DR + + A + N+++KNL + V E + FGK+ SL ++ ++ F V F+
Sbjct: 178 DREVMA-AKSFRNIYIKNLKATVAEADVKTTVETFGKVNSLFLSEHAPFPTK-FALVAFE 235
Query: 240 NPDDARRALEAMN-----GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS 294
+ A +A+ A+N G + L RA K+ER++ E+K+ + + G
Sbjct: 236 EHEAAVKAIAALNESEESGLTEKAAKLVVCRALSKSERDR------EKKKAASLYQNHGR 289
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
N+YVK++ DD+TD+ L+ F+ G ITS +M++ G KGF FVCF + AS A+ +
Sbjct: 290 NLYVKHLPDDITDDRLREIFAPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSL 349
Query: 355 HGYMLH--RKPLYVAIAQRKEDRQAHLQLQYA--QHMAGIEGSSANVIPSGYP 403
+G+ L +K LYV+ A++K+ R LQ + A +H + + N P +P
Sbjct: 350 NGHSLDNSKKLLYVSQAEQKDMRIRLLQQRRAAMRHQSRM-APPMNTFPQQWP 401
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L+ SPEQQK LGE LY + + AKITGMLLEM E+ +L +L K++E
Sbjct: 474 LSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILGDQFALLSKIQE 533
Query: 600 AVQVLK 605
A VL+
Sbjct: 534 ANVVLQ 539
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 154/416 (37%), Positives = 233/416 (56%), Gaps = 31/416 (7%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGE--LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
VVP T S+YVGDL D+ E + + FS + SV+VC+D T RS YGYVNF
Sbjct: 2 VVPVQRT---SVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNF 58
Query: 61 LSPHDAIRAIEVKNHTQLH-GKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
+ DA + I+ N+T + G +R+ +S RDP RKSG+ N+FVK L +I+ LQ
Sbjct: 59 QTTADAEKVIDALNYTGIAPGLQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAA 118
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F G ++SCKVA G SKG+GFVQFET E A AA+ ++NG+ +GD + V F+++
Sbjct: 119 FTKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAAL-DMNGSKLGDSEVVVAPFVRRV 177
Query: 180 DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
DR + + A + N+++KN+ + TE + KFGK+ SL ++ ++ F V F+
Sbjct: 178 DREVMA-AKSFRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSEHAPFPTK-FALVAFE 235
Query: 240 NPDDARRALEAMN-----GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS 294
+ A +A+ A+N G + L RA K+ER++ E+K+ + + G
Sbjct: 236 EHEAAVQAIAALNESEESGLTEKAAKLVVCRALSKSERDR------EKKKAASLYQNHGR 289
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
N+YVK++ DD+TD++L+ F G ITS +M++ G KGF FVCF + AS A+ +
Sbjct: 290 NLYVKHLPDDITDDKLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSL 349
Query: 355 HGYMLH--RKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSS-----ANVIPSGYP 403
+G L +KPLYV+ A++K+ R LQ Q A + S N P +P
Sbjct: 350 NGQPLEHSKKPLYVSHAEQKDMRIRLLQ----QRRAAMRHQSRMVPPMNTFPQQWP 401
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L+ SPEQQK LGE LY + + AKITGMLLEM E+ +L +L K++E
Sbjct: 474 LSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILADHFALLSKIQE 533
Query: 600 AVQVLK 605
A VL+
Sbjct: 534 ANAVLQ 539
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 167/422 (39%), Positives = 235/422 (55%), Gaps = 65/422 (15%)
Query: 224 RDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
RD +G SR FGFVNF+N DDA +A EA+NG K + +AQKK ERE L+ +FE+
Sbjct: 2 RDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQS 61
Query: 284 RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS 343
KE K++G+N+Y+KN+DD + DE++K FS GTITS KVMRD GI++G GFV FS+
Sbjct: 62 MKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFST 121
Query: 344 PEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYP 403
PEEAS+A+ +G M+ KPLYVA+AQRKEDR+A LQ Q++Q S +P
Sbjct: 122 PEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVGRMP---- 177
Query: 404 SLYYTTPPGIVSQV----------PPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP 453
+Y T PG+ Q+ PP+PG YQ VP RP +P+P
Sbjct: 178 -MYPPTGPGLGQQIFYGQGPPAIMPPQPGFGYQ----------QQLVPGMRPG--GAPMP 224
Query: 454 VNPKHNRQNRGRMNGNMLPQV--GAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRE 511
+P V G + + A + + S + Q + +P GR+
Sbjct: 225 --------------NFFVPMVQQGQQGQRPGGRRAGTGQQSQQPVQLMQQQMLPRGRVYR 270
Query: 512 LNKGSGVS--LGTFNSGGVMARKPDMLNGM------LAAP-------------SPEQQKQ 550
G G+ T +GG+++ DM GM L+ P +P+QQ+
Sbjct: 271 YPPGRGLPDVPMTGVAGGMLSVPYDM-GGMPMRDAALSQPIPIGALATALANATPDQQRT 329
Query: 551 ILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
+LGE LYPLVE+ +P+ AK+TGMLLEMD +E+L LLESPE+L KV EA++VL+ + +
Sbjct: 330 MLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKSKVNEAMEVLRTVQQQ 389
Query: 611 VS 612
+
Sbjct: 390 AT 391
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 91/161 (56%), Gaps = 12/161 (7%)
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR----------VLPS 185
DGKS+ GFV FE + A A E LNG DK +VG+ KK +R +
Sbjct: 5 DGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKE 64
Query: 186 PAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A K+ NL++KNLD + +E + E FS FG I S + RD NG SRG GFV F P++
Sbjct: 65 AADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEE 124
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKR 284
A RAL MNG ++ SK LY A AQ+K +R L+ QF + R
Sbjct: 125 ASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMR 165
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 18/149 (12%)
Query: 50 GRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML-----------------RISWSCRDP 92
G+S C+G+VNF + DA +A E N + K R S ++
Sbjct: 6 GKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKEA 65
Query: 93 DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEES 152
+ G ANL++KNL +SI + +++E+F FG I SCKV +G S+G GFV F T E
Sbjct: 66 ADKFQG-ANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEE 124
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
A+ A+ +NG V K +YV +K DR
Sbjct: 125 ASRALLEMNGKMVASKPLYVALAQRKEDR 153
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LY+ +L + D ++ + FS F ++ S +V +D G S G+V F +P +A RA+
Sbjct: 72 ANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPN-GISRGSGFVAFSTPEEASRALL 130
Query: 72 VKNHTQLHGKMLRISWSCRDPDAR 95
N + K L ++ + R D R
Sbjct: 131 EMNGKMVASKPLYVALAQRKEDRR 154
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 121/254 (47%), Positives = 172/254 (67%), Gaps = 5/254 (1%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
++ P+ +T ASLYVGDL+ DVT+ L++ F+ ++S+RVC+DS T +S Y YVN+ +
Sbjct: 8 IMHPSFST-ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
DA RA++ N+T + G+ R+ WS RDP RKSG N+FVKNL +SIDN L + F
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSM 126
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGNI+SCKVAT E GKSK +GFV +E EESA AIE +NG +G K +YVG FIK+S+R
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSERA 186
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ K+TNL++KN VTE HL + FS +G+I S+++ D +R F F+N+ + +
Sbjct: 187 --TNDTKFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKTDN--KNRKFCFINYADSE 242
Query: 243 DARRALEAMNGSVI 256
A+ A+E +NG I
Sbjct: 243 SAKNAMENLNGKKI 256
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 92/145 (63%)
Query: 260 VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT 319
+LY Q +A R IL+ +F+ E K++G N+Y+KN+DD + D+ LK F GT
Sbjct: 406 ILYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGT 465
Query: 320 ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
ITSAKVMRD+K +KGFGFVCF+ EEA+KAV H +++ KPLYV +A+++E R + L
Sbjct: 466 ITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRL 525
Query: 380 QLQYAQHMAGIEGSSANVIPSGYPS 404
Q ++ H ++A P YP+
Sbjct: 526 QQRFRMHPIRHHMNNALNSPMQYPN 550
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 129/259 (49%), Gaps = 21/259 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAI 157
A+L+V +L E + L E+F G++ S +V S KS G+ +V + A A+
Sbjct: 15 TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ LN T + + + D L A N+F+KNLD + + L + FS FG I
Sbjct: 75 DTLNYTNIKGQPARL--MWSHRDPSLRKSGA--GNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G S+ +GFV++++ + A+ A+E +NG +GSK +Y K++ER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSERA---- 186
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
K +N+YVKN D VT+ LK FS G ITS V D K N+ F
Sbjct: 187 ----------TNDTKFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKTDNK--NRKFC 234
Query: 338 FVCFSSPEEASKAVNTFHG 356
F+ ++ E A A+ +G
Sbjct: 235 FINYADSESAKNAMENLNG 253
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 17/191 (8%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L+ DVTE L E F+ G ++S+ + RD S G+ +VN+ N DA
Sbjct: 11 PSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADA 70
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ +N + I K + +++ R + K N++VKN+D
Sbjct: 71 ERALDTLNYTNI------------KGQPARLMWSH----RDPSLRKSGAGNIFVKNLDKS 114
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV DE G +K +GFV + E A +A+ +G L K +
Sbjct: 115 IDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNV 174
Query: 365 YVAIAQRKEDR 375
YV ++ +R
Sbjct: 175 YVGHFIKRSER 185
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 5/158 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V +L + + LFD FS F ++ S +V D G+S YG+V++ A AIE
Sbjct: 104 GNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIE 162
Query: 72 VKNHTQLHGKMLRISWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
N QL K + + + + + NL+VKN +S+ L+++F +G I S
Sbjct: 163 KVNGIQLGSKNVYVGHFIKRSERATNDTKFTNLYVKNFPDSVTEAHLKQLFSPYGEITSM 222
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD 167
V T D K++ F+ + ESA A+ENLNG + D
Sbjct: 223 IVKT--DNKNRKFCFINYADSESAKNAMENLNGKKITD 258
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KNLD + ++ L E F +G I S + RD+ S+GFGFV F ++A +A+ M
Sbjct: 441 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEM 500
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQF 280
+ +I K LY A+K+ +R L+ +F
Sbjct: 501 HLKIINGKPLYVGLAEKREQRLSRLQQRF 529
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
++ PH + + H L K ++ ++ + GV NL++KNL ++ID+ L+E+
Sbjct: 408 YVGPHQS----RARRHAILKAKFDNLNMESKN---KHQGV-NLYIKNLDDAIDDQTLKEL 459
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F+ +G I S KV + +SKG GFV F +E AN A+ ++ + K +YVG K+
Sbjct: 460 FEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMHLKIINGKPLYVGLAEKRE 519
Query: 180 DRV 182
R+
Sbjct: 520 QRL 522
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 548 QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
QKQ+LGE L+PLV + P L KITGM+LEMDNSELL+LLE+ E L K++EA+ VL+
Sbjct: 814 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 871
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 151/417 (36%), Positives = 234/417 (56%), Gaps = 32/417 (7%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGE--LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
+V P T S+YVGDL D+ E + + FS + SV+VC+D T RS YGYVNF
Sbjct: 1 MVAPAQRT--SVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNF 58
Query: 61 LSPHDAIRAIEVKNHTQLH-GKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
+ DA + I+ N+T + G+ +R+ +S RDP RKSG+ N+FVK L +I+ LQ
Sbjct: 59 QTTADAEKVIDALNYTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAA 118
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F G ++SCKVA G SKG+GFVQFET + AA+E +NG+ +GD + V F+++
Sbjct: 119 FSKCGRVLSCKVALDSAGNSKGYGFVQFETADGTKAALE-MNGSKLGDSEVVVAPFVRRV 177
Query: 180 DRVLPSPAAK-YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
DR + AAK + N+++KN+ + TE + +FGK+ SL ++ ++ F V F
Sbjct: 178 DR--EAMAAKSFRNIYIKNITASATEADVKAIVEEFGKVDSLFLSEHARFPTK-FALVAF 234
Query: 239 DNPDDARRALEAMN-----GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
+ A +A+ A+N G + L RA K+ER++ E+K+ + + G
Sbjct: 235 EEHQAAVQAIAALNESEESGLTEKAVKLVVCRALSKSERDR------EKKKAASLYQNHG 288
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
N+Y+K++ DD+TD+ L+ F G ITS +M++ G KGF FVCF + AS A+ +
Sbjct: 289 RNLYIKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTLKGFAFVCFEDKQHASAALRS 348
Query: 354 FHGYMLHR--KPLYVAIAQRKEDRQAHLQ-----LQYAQHMAGIEGSSANVIPSGYP 403
+G+ L KPLYV+ A++K+ R LQ +++ MA + N P +P
Sbjct: 349 LNGHPLEHSAKPLYVSHAEQKDMRIRLLQQRRAAMRHQSRMAPL----MNTFPQQWP 401
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L+ SPEQQK LGE LY + + AKITGMLLEM E+ +L +L K++E
Sbjct: 474 LSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILADHFALLSKIQE 533
Query: 600 AVQVLK 605
A VL+
Sbjct: 534 ANAVLQ 539
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 172/268 (64%), Gaps = 2/268 (0%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P + T ASLYVG+L P VT+ LF+ FS ++AS+RVC+D+ T RS Y YVN+ +
Sbjct: 46 PHNSHTSASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTA 105
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
D RA+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FG
Sbjct: 106 DGERALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG 165
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV-- 182
NI+SCKVA E S+G+GFV +ET E+AN AI+++NG + +K+++VG I K DR
Sbjct: 166 NILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSK 225
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
A +TN+++KN+D +VT+E F +G I S ++RD++G SRGFGFVNF
Sbjct: 226 FDEMKANFTNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSRGFGFVNFQEHQ 285
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKA 270
A +A+E ++ S + + LY +K A
Sbjct: 286 HAAKAVEELHESELKGQTLYPLELRKLA 313
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 145/270 (53%), Gaps = 21/270 (7%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAIE 158
A+L+V L S+ L E+F GN+ S +V + +S G+ +V + A+E
Sbjct: 53 ASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGERALE 112
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKFG 215
LN T + + I S R PA + T N+F+KNLD+ + + L + F+ FG
Sbjct: 113 ELNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG 165
Query: 216 KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI 275
I S +A+DE SRG+GFV+++ + A A++ +NG ++ K ++ K +R+
Sbjct: 166 NILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQS- 224
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG 335
+F+E +K +NVYVKNID +VTDEE + F G ITSA + RD+ G+++G
Sbjct: 225 ---KFDE------MKANFTNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSRG 275
Query: 336 FGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
FGFV F + A+KAV H L + LY
Sbjct: 276 FGFVNFQEHQHAAKAVEELHESELKGQTLY 305
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/274 (43%), Positives = 185/274 (67%), Gaps = 6/274 (2%)
Query: 145 VQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTE 204
+ + EE+A+ AIE LNG + DK+++VG F++K DR + + K+ N+F+KNL TE
Sbjct: 1 IYVDPEEAAHNAIEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTE 60
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
++L+E F ++G I S ++ R+ +G S+ FGFVNF++P+ A +A++ +NG K Y
Sbjct: 61 DNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVG 120
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK 324
+AQKK+ERE L+ +FE++ +E K +G+N+Y+KN+DD + D++L+ FS+ G+ITS K
Sbjct: 121 KAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSITSCK 180
Query: 325 VMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYA 384
VMRD G+++G GFV F SP++ASKA+ +G M+ KPLYVA+AQRKEDR+A LQ Q++
Sbjct: 181 VMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQAQFS 240
Query: 385 QHM-AGIEGSSANVIPSGYPSLYYTTPPGIVSQV 417
Q I S A +P +Y PG+ Q+
Sbjct: 241 QMRPVAIPPSVAPRVP-----MYPAGAPGMGQQL 269
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 131/242 (54%), Gaps = 17/242 (7%)
Query: 60 FLSPHDAIR-AIEVKNHTQLHGKMLRISWSCRDPD----ARKSGVANLFVKNLIESIDNV 114
++ P +A AIE N L+ K + + R D A + N+FVKNL ES
Sbjct: 2 YVDPEEAAHNAIEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTED 61
Query: 115 RLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGR 174
L E+F +GNI S V DGKSK GFV FE E A A++ LNG K YVG+
Sbjct: 62 NLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVGK 121
Query: 175 FIKKSDRVL------------PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222
KKS+R + + + NL++KNLD + ++ L E FS+FG I S +
Sbjct: 122 AQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSITSCKV 181
Query: 223 ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEE 282
RD NG SRG GFV F +PDDA +AL MNG +IGSK LY A AQ+K +R L+ QF +
Sbjct: 182 MRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQAQFSQ 241
Query: 283 KR 284
R
Sbjct: 242 MR 243
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 17/185 (9%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+++V +L T+ L + F E+ ++ S V ++ G+S C+G+VNF P A +A++
Sbjct: 48 NVFVKNLSESTTEDNLLEIFGEYGNITSAVVMREGD-GKSKCFGFVNFEDPEHAAKAVKE 106
Query: 73 KNHTQLHGKMLRISWSCRDPD----------------ARKSGVANLFVKNLIESIDNVRL 116
N + GK + + + + A K+ ANL++KNL +SI + +L
Sbjct: 107 LNGKKFDGKEWYVGKAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKL 166
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
+E+F FG+I SCKV +G S+G GFV F++ + A+ A+ +NG +G K +YV
Sbjct: 167 RELFSEFGSITSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQ 226
Query: 177 KKSDR 181
+K DR
Sbjct: 227 RKEDR 231
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LY+ +L + D +L + FSEF S+ S +V +D G S G+V F SP DA +A+
Sbjct: 150 ANLYLKNLDDSIGDDKLRELFSEFGSITSCKVMRD-PNGVSRGSGFVAFQSPDDASKALA 208
Query: 72 VKNHTQLHGKMLRISWSCRDPDAR 95
N + K L ++ + R D R
Sbjct: 209 EMNGKMIGSKPLYVALAQRKEDRR 232
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 172/254 (67%), Gaps = 5/254 (1%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
++ P+ +T ASLYVGDL+ DVT+ L++ F+ ++S+RVC+DS T +S Y YVN+ +
Sbjct: 8 MMHPSFST-ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
DA RA++ N+T + G+ R+ WS RDP RKSG N+FVKNL +SIDN L + F
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FGNI+SCKVAT E GKSK +GFV +E EESA AIE +NG +G K +YVG FIKKS+R
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERA 186
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ K+TNL++KN VTE HL + F+ +G+I S+++ D +R F F+N+ + +
Sbjct: 187 --TNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMD--NKNRKFCFINYADAE 242
Query: 243 DARRALEAMNGSVI 256
A+ A++ +NG I
Sbjct: 243 SAKNAMDNLNGKKI 256
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%)
Query: 260 VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT 319
+LY Q +A R IL+ +F+ E K++G N+Y+KN+DD + D L+ F GT
Sbjct: 416 ILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT 475
Query: 320 ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
ITSAKVMRDEK +KGFGFVCF+S EEA+KAV H +++ KPLYV +A+++E R + L
Sbjct: 476 ITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRL 535
Query: 380 QLQYAQH 386
Q ++ H
Sbjct: 536 QQRFRMH 542
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 131/259 (50%), Gaps = 21/259 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAI 157
A+L+V +L E + L E+F G++ S +V S KS G+ +V + A A+
Sbjct: 15 TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ LN T + + R + S R + N+F+KNLD + + L + FS FG I
Sbjct: 75 DTLNYTNIKGQ---PARLMW-SHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNI 130
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G S+ +GFV++++ + A+ A+E +NG +GSK +Y KK+ER
Sbjct: 131 LSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERA---- 186
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
K +N+YVKN D VT+ L+ F+ G ITS V D K N+ F
Sbjct: 187 ----------TNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK--NRKFC 234
Query: 338 FVCFSSPEEASKAVNTFHG 356
F+ ++ E A A++ +G
Sbjct: 235 FINYADAESAKNAMDNLNG 253
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 99/194 (51%), Gaps = 23/194 (11%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P+ +L++ +L+ DVTE L E F+ G ++S+ + RD S G+ +VN+ N DA
Sbjct: 11 PSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADA 70
Query: 245 RRALEAMNGSVIG---SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
RAL+ +N + I ++++++ R+ LR K N++VKN+
Sbjct: 71 ERALDTLNYTNIKGQPARLMWS-------HRDPSLR------------KSGTGNIFVKNL 111
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
D + ++ L FS G I S KV DE G +K +GFV + E A +A+ +G L
Sbjct: 112 DKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGS 171
Query: 362 KPLYVAIAQRKEDR 375
K +YV +K +R
Sbjct: 172 KNVYVGPFIKKSER 185
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 10/141 (7%)
Query: 44 CKDSTTGRSTCYGYVNFL--SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN 101
K T S C N L PH + + H L K ++ ++ + GV N
Sbjct: 400 AKKDETAASDCADTPNILYVGPHQS----RARRHAILKAKFDNLNVENKN---KHQGV-N 451
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L++KNL + ID++ L+E+F+ FG I S KV E +SKG GFV F ++E AN A+ ++
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 162 GTTVGDKRIYVGRFIKKSDRV 182
+ K +YVG K+ R+
Sbjct: 512 LKIINGKPLYVGLAEKREQRL 532
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KNLD + + L E F FG I S + RDE S+GFGFV F + ++A +A+ M
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQF 280
+ +I K LY A+K+ +R L+ +F
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLSRLQQRF 539
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 548 QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
QKQ+LGE L+PLV + P L KITGM+LEMDNSELL+LLE+ E L K++EA+ VL+
Sbjct: 815 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 872
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 170/239 (71%), Gaps = 11/239 (4%)
Query: 160 LNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+NG + DK+++VG+F+ +S+R+ + ++TN+++KN E+ L F K+G +
Sbjct: 1 VNGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVV 60
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVI-----GSKVLYAARAQKKAER 272
S+ + RD +G SRGFGFV +D+ ++A+ A+EAMNG I + +LY RAQKK ER
Sbjct: 61 KSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQER 120
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
+Q LR Q+E++++ERI +++G N+YVKN+DD+VTD+EL+ F+ GTITSAK+M D +
Sbjct: 121 QQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECS 180
Query: 333 ----NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHM 387
++GFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQR+EDR+AHL QY Q M
Sbjct: 181 TGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAHLTAQYMQRM 239
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 23/226 (10%)
Query: 80 GKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKS 139
GK L S + R N+++KN + D LQ MF+ +G + S V DG S
Sbjct: 14 GKFLTRSERIKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNS 73
Query: 140 KGHGFVQFETEESANAAIENLNGTTV----GDKRI-YVGRFIKKSDRVLPSPAAKY---- 190
+G GFV +++ E A AA+E +NG + G I YVGR KK +R +Y
Sbjct: 74 RGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQER-QQELRGQYEQQK 132
Query: 191 ---------TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGT----SRGFGFVN 237
NL++KNLD +VT++ L E F+ +G I S I D + SRGFGFV
Sbjct: 133 QERIQRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVC 192
Query: 238 FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
F +P++A +A+ MNG ++G+K LY A AQ++ +R+ L Q+ ++
Sbjct: 193 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAHLTAQYMQR 238
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLL 587
V ++P + + MLA+ P++QKQ+LGERLYPL+E+ PDL +KITGMLLE+DNSELL +L
Sbjct: 383 VQGQEP-LTSSMLASAQPQEQKQMLGERLYPLIEQSHPDLASKITGMLLEIDNSELLHML 441
Query: 588 ESPESLAVKVEEAVQVLKLSEAKVS 612
ES ESL KVEEAV VL+ + KV+
Sbjct: 442 ESRESLKAKVEEAVAVLQAHQVKVA 466
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKD---STTGRSTCYGYVNFLSPHDAIRA 69
+LYV +L +VTD EL +AF+ + ++ S ++ D ST RS +G+V F SP +A +A
Sbjct: 143 NLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSPEEATKA 202
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRL 116
+ N + K L ++ + R D RK+ + +++ + S+ VR+
Sbjct: 203 VTEMNGRIVGTKPLYVALAQRRED-RKAHLTAQYMQRMTSSM-GVRM 247
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 176/478 (36%), Positives = 248/478 (51%), Gaps = 55/478 (11%)
Query: 168 KRIYVGRFIKKS--DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD 225
K+++VG+F ++ +R L A KYTN+++KN +E L + F+K+G I S +
Sbjct: 6 KKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSCDVM-T 64
Query: 226 ENGTSRGFGFVNFDNPDDARRALEAMNGS-VIGSKV-LYAARAQKKAEREQILRHQFEEK 283
+G S+GFGFV F P++A A++A+N S V GS + L+ RAQKK+ER L+ + E+
Sbjct: 65 SDGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQH 124
Query: 284 RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS 343
+ ER+ KY+G N+YVKN+D+ V DE LK F G ITSAKVM DE G +KGFGFVCF
Sbjct: 125 KVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEK 184
Query: 344 PEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYP 403
PEEA+ AV + M+ KPLYVA+AQRKEDR+A L QY Q +A +
Sbjct: 185 PEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMR------------ 232
Query: 404 SLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNR 463
++ P G + P+PG Y R G RP + P P N+
Sbjct: 233 -MHTNVPGGGLYPQQPQPGPGYYVANPMQQQRNFGGPQMVRPGGRWGPQNQYPVQNQYMM 291
Query: 464 GRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKG-------- 515
+ G ++G QQ S + S Q G + + P R N G
Sbjct: 292 AQGPGVYQNRMGRPQNQQGGPRGPSQQYSQVAQGGIRMQGPP----RPQNAGVQQPNVQR 347
Query: 516 ---------SGVSLGT--------------FNSGGVMARKPDMLNGMLAAPSPEQQKQIL 552
GT G V+ + + + MLAA +P++QKQ+L
Sbjct: 348 PPPQQPQQQRPAPTGTKAQPQAYQQPYQQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQLL 407
Query: 553 GERLYPLVEKHKPDL--VAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSE 608
GER+Y L+EK P KITGM+LE+DNSEL+++L+ E KV+EA VL S+
Sbjct: 408 GERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLASSQ 465
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 107/213 (50%), Gaps = 27/213 (12%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TA ++YV + L F+++ ++ S V ++ G+S +G+V F P +A
Sbjct: 26 TAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSCDVM--TSDGKSKGFGFVAFAEPEEA 83
Query: 67 IRAIEVKNHTQLHGKMLRI------SWSCRDPDARK-------------SGVANLFVKNL 107
A++ N + + G L++ S R + +K GV NL+VKNL
Sbjct: 84 EAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGV-NLYVKNL 142
Query: 108 IESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD 167
ES+D+ L++ F++FGNI S KV T E+G+SKG GFV FE E A A+ +N V
Sbjct: 143 DESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCS 202
Query: 168 KRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
K +YV +K DR A+ + +M+ L S
Sbjct: 203 KPLYVALAQRKEDR-----RAQLASQYMQRLAS 230
>gi|154338582|ref|XP_001565513.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062565|emb|CAM39007.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 552
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 226/404 (55%), Gaps = 24/404 (5%)
Query: 13 SLYVGDLHPDVTDGE--LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
S++VGDL D+ E + + FS + SV+VC+D T RS YGYVNF + DA + I
Sbjct: 9 SVFVGDLPVDLPRPEEAINNLFSSIAPVVSVKVCRDIATQRSLGYGYVNFQTTADAEKVI 68
Query: 71 EVKNHTQLH-GKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
+ N T + G+ +R+ ++ RDP RKSG N+FVK L ++ LQ F G ++SC
Sbjct: 69 DALNFTGIAPGRYIRVMFAIRDPLQRKSGANNIFVKKLDAAVSAKALQAAFSRCGRVLSC 128
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
KVA +G SKG+GFVQFET + A AA+ ++NG VGD + V F+++ DR + AAK
Sbjct: 129 KVALDSEGHSKGYGFVQFETADGAKAAL-DMNGAKVGDSEVEVAPFVRRVDR--EAMAAK 185
Query: 190 -YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
+ N+++KN+ + TE + KFGK+ SL +A ++ F F+ + A +A+
Sbjct: 186 SFRNIYIKNIKATATEVDMRTTLEKFGKVTSLFLAEHAPFLTK-FALAVFEEHEAAVKAI 244
Query: 249 EAMN-----GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
+N G + L RA K+ER++ E K+ + + G N+YVK++ D
Sbjct: 245 AELNESEESGLTEEAVKLVVCRALSKSERDR------ERKKTASLYQNHGRNLYVKHLPD 298
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH--R 361
D+TD++L+ F+ G ITS +MR+ G +GF FVCF + A+ A+ +G L +
Sbjct: 299 DITDDKLREIFAPFGKITSCAIMRESNGSLRGFAFVCFEDKQHATAAMRELNGRSLESSK 358
Query: 362 KPLYVAIAQRKEDRQAHLQLQYA--QHMAGIEGSSANVIPSGYP 403
KPLYV+ A++K+ R LQ + A +H + N P +P
Sbjct: 359 KPLYVSQAEQKDMRIRLLQQRRAAMRHQTRM-APPMNTFPQQWP 401
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 544 SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
SPEQQK LGE LY + + AKITGMLLEM E+ +L +L K++EA V
Sbjct: 486 SPEQQKNYLGELLYSRIMPVESFNAAKITGMLLEMSREEIFEVLRDHFALLAKIQEANAV 545
Query: 604 LK 605
L+
Sbjct: 546 LQ 547
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 182/327 (55%), Gaps = 60/327 (18%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS S+ S+RVC+D + RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI--------------------- 170
E G S+G GFV FET E+A+ AI +NG + D+++
Sbjct: 131 VCDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCPAGRVGSGKRPPSGR 189
Query: 171 -------------------------YVGRFIKKSDR----------VLPSPAAKY--TNL 193
YVGR K+++R + +Y NL
Sbjct: 190 SRPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQIKQERVNRYQGVNL 249
Query: 194 FMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG 253
++KNLD + +E L ++FS +G I S + E+G S+GFGFV F +P++A +A+ MNG
Sbjct: 250 YVKNLDDCIDDEKLRKEFSPYGTITSAKVM-TESGHSKGFGFVCFSSPEEATKAVTEMNG 308
Query: 254 SVIGSKVLYAARAQKKAEREQILRHQF 280
++ +K LY A AQ+K ER+ IL +Q+
Sbjct: 309 RIVSTKPLYVALAQRKEERKAILTNQY 335
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 163/507 (32%), Positives = 247/507 (48%), Gaps = 84/507 (16%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G+IIS +V +S G+ ++ F+ A A+
Sbjct: 10 LASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I I S R + N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFEVIKGRPIR----IMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSTFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSV----------------IGS--- 258
S + DE+G SRGFGFV+F+ + A +A+ MNG + +GS
Sbjct: 126 LSCKVVCDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCPAGRVGSGKR 184
Query: 259 ---------------------------KVLYAARAQKKAEREQILRHQFEEKRKERILKY 291
+VLY RAQK+ ER+ L+ +FE+ ++ER+ +Y
Sbjct: 185 PPSGRSRPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQIKQERVNRY 244
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAV 351
+G N+YVKN+DD + DE+L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV
Sbjct: 245 QGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVM-TESGHSKGFGFVCFSSPEEATKAV 303
Query: 352 NTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPP 411
+G ++ KPLYVA+AQRKE+R+A L QY ++ I A ++ S + P
Sbjct: 304 TEMNGRIVSTKPLYVALAQRKEERKAILTNQYMHRLSTIRTLVAPIMGS------FQQPT 357
Query: 412 GIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNML 471
G P+P R+ + V P RPA P + M +
Sbjct: 358 GYFLPALPQP-------QTRSTFYGPSPVDPVRPA----PRWAGQTPRAYSTPLMRTPLA 406
Query: 472 PQ---VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGV 528
P+ G ++Q+S A S+ +S Q +S+Y + + + V V
Sbjct: 407 PRRFLSGISTVKQASTQA--SQPASLSQTVARSRYNSVSPLCRVQVEAAVH--------V 456
Query: 529 MARKPDMLNGMLAAPSPEQQKQILGER 555
+ ++P + MLA P++QKQ+L R
Sbjct: 457 LGQEP-LTASMLAKAPPQEQKQMLARR 482
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 95 RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESAN 154
R GV NL+VKNL + ID+ +L++ F +G I S KV T E G SKG GFV F + E A
Sbjct: 243 RYQGV-NLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMT-ESGHSKGFGFVCFSSPEEAT 300
Query: 155 AAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
A+ +NG V K +YV +K +R A TN +M L +
Sbjct: 301 KAVTEMNGRIVSTKPLYVALAQRKEER-----KAILTNQYMHRLST 341
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G+I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ +P+ + +QR
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQR 89
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYV +L + D +L FS + ++ S +V +S G S +G+V F SP +A +A+
Sbjct: 248 NLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTES--GHSKGFGFVCFSSPEEATKAVTE 305
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL 107
N + K L ++ + R + RK+ + N ++ L
Sbjct: 306 MNGRIVSTKPLYVALAQRK-EERKAILTNQYMHRL 339
>gi|384495100|gb|EIE85591.1| hypothetical protein RO3G_10301 [Rhizopus delemar RA 99-880]
Length = 359
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 205/372 (55%), Gaps = 54/372 (14%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P TT SLYVG+L P + + L + F KS V+VC+DS T +S Y ++NF +P D
Sbjct: 33 PKITTQTSLYVGELAPHIDEAMLKEHFGNVKS---VQVCRDSVTNQSLGYAHINFYTPQD 89
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A E NH+++ G R+ S R+ R SG N+ +KNL ++DN L + F +GN
Sbjct: 90 CSAAFENLNHSKIDGTTYRLMISERETTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGN 149
Query: 126 IISCKVATSEDGKS-KGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--V 182
+ISC+V G S KG+GFV ++T +A AI +NG + K ++ + K+++ +
Sbjct: 150 VISCRVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASHQVLKNEKESL 209
Query: 183 LP---SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
L ++TN+++KNL SDVTE+ L E FS G ++S+L+ RD+ +GFGFVNF+
Sbjct: 210 LSHNDQQHCRFTNVYVKNLSSDVTEDDLGELFSTIGPVSSVLVQRDDQHKPKGFGFVNFE 269
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
P+DA RA+ ++ K +A
Sbjct: 270 LPEDAERAVNELH-----DKDFFA------------------------------------ 288
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYM 358
+DVTDE L +F GTITSAK+M+DE G KGFGFVCFSS +EA++AV +G
Sbjct: 289 ---EDVTDEILINNFLPYGTITSAKIMKDESTGAPKGFGFVCFSSSDEANRAVAEMNGRF 345
Query: 359 LHRKPLYVAIAQ 370
+ KP+YVA+AQ
Sbjct: 346 ISSKPIYVALAQ 357
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 27/246 (10%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
T+L++ L + E L E F G + S+ + RD S G+ +NF P D A E
Sbjct: 39 TSLYVGELAPHIDEAMLKEHF---GNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFE 95
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N S I R E+ + + G N+ +KN+ +V ++
Sbjct: 96 NLNHSKIDGTTY---------------RLMISERETTKRVSGAG-NIILKNLHPNVDNKS 139
Query: 310 LKAHFSQCGTITSAKVMRDEKGIN-KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L FS+ G + S +V G + KG+GFV + + A +A++ +G ML K ++ +
Sbjct: 140 LYDTFSRWGNVISCRVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASH 199
Query: 369 AQRKEDRQAHLQLQYAQHM----AGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLM 424
K ++++ L QH ++ S++V L+ T P VS V +
Sbjct: 200 QVLKNEKESLLSHNDQQHCRFTNVYVKNLSSDVTEDDLGELFSTIGP--VSSVLVQRDDQ 257
Query: 425 YQPLGL 430
++P G
Sbjct: 258 HKPKGF 263
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 151/383 (39%), Positives = 218/383 (56%), Gaps = 43/383 (11%)
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
A+E MNG +G VLY RAQKK+ERE+ LR +FE++R R K +G+N+Y+KN+DD V
Sbjct: 4 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVD 63
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
DE+LK FS+ G +TS+KVM + +G+++GFGFV +S+PEEA +A++ +G M+ RKPLY+
Sbjct: 64 DEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 123
Query: 367 AIAQRKEDRQAHLQLQYAQ-----HMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP 421
A+AQRKEDR+AHLQ ++Q M+G +P +Y S VP +P
Sbjct: 124 ALAQRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMPGPPQHMYVGQ--NGASMVPSQP 181
Query: 422 -GLMYQPL---GLRTGWRANGFV--------PPTRPAFQVSPLPVNPKHNRQNRGRMNGN 469
G +QP G+R G F+ P T P N + + Q + M+ N
Sbjct: 182 IGYGFQPQFMPGMRPGSGPGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRN 241
Query: 470 MLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVM 529
P G YM +S + G VP G + + ++ +
Sbjct: 242 --PSPGMRYMNGASNG-----------RNGMDSSVPQGILPP------IIPLPIDASSIS 282
Query: 530 ARKPDM-----LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELL 584
+K + L LA+ SP + ++LGE+LYPLVE+H+P VAK+TGMLLEMD +E+L
Sbjct: 283 HQKAPLLPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEIL 342
Query: 585 LLLESPESLAVKVEEAVQVLKLS 607
L+ESPE+L KV EA+ VL+LS
Sbjct: 343 HLMESPEALKSKVSEALDVLRLS 365
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 12/142 (8%)
Query: 155 AAIENLNGTTVGDKRIYVGRFIKKSDR------------VLPSPAAKYTNLFMKNLDSDV 202
AA+E +NG ++GD +YVGR KKS+R + ++ NL++KNLD V
Sbjct: 3 AAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSV 62
Query: 203 TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY 262
+E L E FS++G + S + + G SRGFGFV + NP++A RAL MNG +IG K LY
Sbjct: 63 DDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLY 122
Query: 263 AARAQKKAEREQILRHQFEEKR 284
A AQ+K +R L+ F + R
Sbjct: 123 IALAQRKEDRRAHLQALFSQIR 144
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 54/86 (62%)
Query: 96 KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANA 155
KS ANL++KNL +S+D+ +L+EMF +GN+ S KV + G S+G GFV + E A
Sbjct: 47 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALR 106
Query: 156 AIENLNGTTVGDKRIYVGRFIKKSDR 181
A+ +NG +G K +Y+ +K DR
Sbjct: 107 ALSEMNGKMIGRKPLYIALAQRKEDR 132
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LY+ +L V D +L + FSE+ ++ S +V + G S +G+V + +P +A+RA+
Sbjct: 51 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALS 109
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLF 103
N + K L I+ + R D R++ + LF
Sbjct: 110 EMNGKMIGRKPLYIALAQRKED-RRAHLQALF 140
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 205/373 (54%), Gaps = 35/373 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DVT+ L++ F+ ++SVR+C+D+ T RS Y YVN+ S DA RA++
Sbjct: 12 ASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALD 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T + G+ RI W RDP +R++ N+FVKNL +SIDN L + F FGNI+SCK+
Sbjct: 72 TLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKI 131
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT +GKS G+GF+ FE +SA AI LNG +GD+ IYVG+F KK++R +T
Sbjct: 132 ATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAER-FSEKDKTFT 190
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++K++ TE+ L + F +GKI+SL++ D G R FGFVNF+NPD A+ A+ A+
Sbjct: 191 NVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAAL 248
Query: 252 -NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
N V V + A+ A+ E D + + ++
Sbjct: 249 HNALVTPVGVELDSTAETSADNE-------------------------AGADSETSSKQE 283
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
S S++ +D G + F+ E+ S N +R LYV+ AQ
Sbjct: 284 SGEASNKKQTASSETSKDSSGTSN----EEFAQNEDGSADKNVSADVQPNR--LYVSRAQ 337
Query: 371 RKEDRQAHLQLQY 383
+K +RQ L+ Q+
Sbjct: 338 KKNERQVVLKSQH 350
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 187/675 (27%), Positives = 302/675 (44%), Gaps = 101/675 (14%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V +L + + LFD FS F ++ S ++ D G+S YG+++F A AI
Sbjct: 100 GNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATD-VEGKSLGYGFIHFEHADSAKEAIS 158
Query: 72 VKNHTQLHGKMLRISWSCRDPD---ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
N L + + + + + + N++VK++ +S L ++F +G I S
Sbjct: 159 RLNGAVLGDRPIYVGKFQKKAERFSEKDKTFTNVYVKHIPKSWTEDLLYKIFGVYGKISS 218
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
+ + D K + GFV FE +SA AA+ L+ V VG + + A
Sbjct: 219 LVLQS--DSKGRPFGFVNFENPDSAKAAVAALHNALV----TPVGVELDSTAETSADNEA 272
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
DS+ + + + S + AS ++D +GTS N D D +
Sbjct: 273 --------GADSETSSKQESGEASNKKQTASSETSKDSSGTSNEEFAQNEDGSADKNVSA 324
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ + LY +RAQKK ER+ +L+ Q E KE +Y+G N+YVKN+ D + +E
Sbjct: 325 D------VQPNRLYVSRAQKKNERQVVLKSQ-HEAVKESHQRYQGVNLYVKNLADSINEE 377
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+L++ F GT++S + DE G+++GFGFV F SP+EA+KA+ H ++ KPLYV +
Sbjct: 378 DLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGL 437
Query: 369 AQRKEDRQAHLQ-----------LQYAQHMAGIEGSSANVIPSGYPSLYYTTP--PGIVS 415
+RKE R LQ L+ G G + G P Y P P + +
Sbjct: 438 HERKEQRALRLQQRIRGGAVPPVLRPGAIPPGPPGVHGAPMQFGVPPQMYFIPGNPNVAA 497
Query: 416 QVPPRPGLMY-----QPLGLRTGWRANGFVPPTRPAFQVSPLPVN----PKHNRQNRGRM 466
P M + WR N PTR + +P P+ N +
Sbjct: 498 TAMPHGRAMVTGGFPNQNAMNNPWRPN----PTRMPYTAGGVPPQMTGGPQMTAYNGNVI 553
Query: 467 NGNMLPQVGAHYMQQSSQSAASS------KDSSNQQKGGQSKYVPNGRIRELNKGSGVSL 520
N + GA S Q+ + + + N + GG ++ + N ++ G G
Sbjct: 554 QQNGVSPNGAANATGSVQNGVTGNAVPGVQGAQNNRTGGNNQRIHNRHVQ--GNGQGGRP 611
Query: 521 GTF----------------NSGGVMARKPDML--------NGMLAA----PSPE------ 546
G+ N G ++ DM+ NG L P P+
Sbjct: 612 GSHGHQVQQMQKQGFKFPQNVKGSEMQRVDMMQNRQMDPSNGALVQNPLIPQPDVPLTAA 671
Query: 547 --------QQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
QKQ+LGERL+P++ + +P+L KITGM+LEMDN+ELL LL S + KV+
Sbjct: 672 TLAAASPSMQKQLLGERLFPIIAQFQPELAGKITGMMLEMDNNELLELLSSDIEIKNKVD 731
Query: 599 EAVQVLKLSEAKVST 613
EA+ VL+ ++ ++ST
Sbjct: 732 EAMVVLERAQQQIST 746
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 164/412 (39%), Positives = 218/412 (52%), Gaps = 59/412 (14%)
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+E MNG + K ++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD +
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
DE+L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 366 VAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYT 408
VA+AQRKE+R+AHL QY Q +AG+ AN I GY P++ YYT
Sbjct: 120 VALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT 179
Query: 409 TPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP----VNPKHNR-QNR 463
P ++Q+ P P + G R GF Q P P + P N +R
Sbjct: 180 --PNQLAQMRPNP-------RWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASR 230
Query: 464 G-----RMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGV 518
G + G+ P A M AA + + Q GG VPN R +
Sbjct: 231 GLPTTAQRVGSECPDRLA--MDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAP 288
Query: 519 SLGTFNSGGVMARKPDMLNGMLAAPSP--------------------EQQKQILGERLYP 558
R P L AP P ++QKQ+LGERL+P
Sbjct: 289 RAVAPYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFP 348
Query: 559 LVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L++ +L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 349 LIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 400
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 85/140 (60%), Gaps = 13/140 (9%)
Query: 156 AIENLNGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSDVT 203
A+E +NG + K I+VGR KK +R + ++Y NL++KNLD +
Sbjct: 2 AVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 61
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYA 263
+E L ++FS FG I S + E+G S+GFGFV F +P++A +A+ MNG ++GSK LY
Sbjct: 62 DEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 120
Query: 264 ARAQKKAEREQILRHQFEEK 283
A AQ+K ER+ L +Q+ ++
Sbjct: 121 ALAQRKEERKAHLTNQYMQR 140
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 7/105 (6%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153
+R GV NL++KNL ++ID+ +L++ F FG+I S KV EDG+SKG GFV F + E A
Sbjct: 44 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 101
Query: 154 NAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNL 198
A+ +NG VG K +YV +K +R A TN +M+ +
Sbjct: 102 TKAVTEMNGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRV 141
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LY+ +L + D +L FS F S+ S +V + GRS +G+V F SP +A +A+
Sbjct: 50 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 107
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL 107
N + K L ++ + R + RK+ + N +++ +
Sbjct: 108 MNGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRV 141
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 164/245 (66%), Gaps = 3/245 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DVT+ L++ F+ ++SVR+C+D+ T RS Y YVN+ S DA RA++
Sbjct: 12 ASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALD 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T + G+ RI W RDP +R++ N+FVKNL +SIDN L + F FGNI+SCK+
Sbjct: 72 TLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKI 131
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT +GKS G+GF+ FE +SA AI LNG +GD+ IYVG+F KK++R +T
Sbjct: 132 ATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAER-FSEKDKTFT 190
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++K++ TE+ L + F +GKI+SL++ D G R FGFVNF+NPD A+ A+ A+
Sbjct: 191 NVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAAL 248
Query: 252 NGSVI 256
+ +++
Sbjct: 249 HNALV 253
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 186/675 (27%), Positives = 302/675 (44%), Gaps = 101/675 (14%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V +L + + LFD FS F ++ S ++ D G+S YG+++F A AI
Sbjct: 100 GNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATD-VEGKSLGYGFIHFEHADSAKEAIS 158
Query: 72 VKNHTQLHGKMLRISWSCRDPD---ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
N L + + + + + + N++VK++ +S L ++F +G I S
Sbjct: 159 RLNGAVLGDRPIYVGKFQKKAERFSEKDKTFTNVYVKHIPKSWTEDLLYKIFGVYGKISS 218
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
+ + D K + GFV FE +SA AA+ L+ V + + D +P
Sbjct: 219 LVLQS--DSKGRPFGFVNFENPDSAKAAVAALHNALVTPVGVEL-------DSTAETPVD 269
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
DS+ + + + S + AS ++D +GTS N D D +
Sbjct: 270 NEAGA-----DSETSSKQESGEASNKKQTASGEASKDSSGTSNEESAQNEDGSADKNVSA 324
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ + LY +RAQKK ER+ +L+ Q E KE +Y+G N+YVKN+ D + +E
Sbjct: 325 D------VQPNRLYVSRAQKKNERQVVLKSQ-HEAVKESHQRYQGVNLYVKNLADSINEE 377
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+L++ F GT++S + DE G+++GFGFV F SP+EA+KA+ H ++ KPLYV +
Sbjct: 378 DLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGL 437
Query: 369 AQRKEDRQAHLQ-----------LQYAQHMAGIEGSSANVIPSGYPSLYYTTP--PGIVS 415
+RKE R LQ L+ G G + G P Y P P + +
Sbjct: 438 HERKEQRALRLQQRIRGGAVPPVLRPGAIPPGPPGVHGAPMQFGVPPQMYFIPGNPNVAA 497
Query: 416 QVPPRPGLMY-----QPLGLRTGWRANGFVPPTRPAFQVSPLPVN----PKHNRQNRGRM 466
P M + WR N PTR + +P P+ N +
Sbjct: 498 TAMPHGRAMVTGGFPNQNAMNNPWRPN----PTRMPYTAGGVPPQMTGGPQMTAYNGNVI 553
Query: 467 NGNMLPQVGAHYMQQSSQSAASS------KDSSNQQKGGQSKYVPNGRIRELNKGSGVSL 520
N + GA S Q+ + + + N + GG ++ + N ++ G G
Sbjct: 554 QQNGVSPNGAANATGSVQNGVTGNAVTGVQGAQNNRTGGNNQRIHNRHVQ--GNGQGGRP 611
Query: 521 GTF----------------NSGGVMARKPDML--------NGMLAA----PSPE------ 546
G+ N G ++ DM+ NG L P P+
Sbjct: 612 GSHGHQVQQMQKQGFKFPQNVKGSEMQRVDMMQNRQMDSSNGALVQNPLIPQPDVPLTAA 671
Query: 547 --------QQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
QKQ+LGERL+P++ + +P+L KITGM+LEMDN+ELL LL S + KV+
Sbjct: 672 TLAAASPSMQKQLLGERLFPIIAQFQPELAGKITGMMLEMDNNELLELLSSDIEIKNKVD 731
Query: 599 EAVQVLKLSEAKVST 613
EA+ VL+ ++ ++ST
Sbjct: 732 EAMVVLERAQQQIST 746
>gi|340386042|ref|XP_003391517.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Amphimedon queenslandica]
Length = 393
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 168/264 (63%), Gaps = 1/264 (0%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
PP+ SLYVGDL PDV + +LFD FS+ + S+ VC+D T RS Y Y+ F P
Sbjct: 4 PPSFPPLQSLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPA 63
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
DA RA + N+ + G+ I WS RDP R+S ++F+KNL SID+ L + F FG
Sbjct: 64 DAERAFDTMNYEPIKGQPCYIMWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFG 123
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP 184
NI+SCKVAT +G+SKG GFV F+ +E+A+ AIE +NG + +++++VG+FI + DR
Sbjct: 124 NILSCKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRSHT 183
Query: 185 SPAAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
YTN +F+KN D T+E L F KFG IA+ ++ +D G S+ FGFV+F++ +
Sbjct: 184 GFNQHYTNVVFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFVSFESHEA 243
Query: 244 ARRALEAMNGSVIGSKVLYAARAQ 267
A A++A++ S++ + +Y +RA
Sbjct: 244 ASAAVQAVHSSIVNGRQVYCSRAH 267
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 139/271 (51%), Gaps = 16/271 (5%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIIS-CKVATSEDGKSKGHGFVQFETEESANAAIEN 159
+L+V +L+ ++ L + F G ++S C +S G+ ++ F+ A A +
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
+N + + Y I S R ++ ++F+KNL+ + + L + FS FG I S
Sbjct: 72 MNYEPIKGQPCY----IMWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFGNILS 127
Query: 220 LLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQ 279
+A D NG S+G GFV+FD + A A+E +NG ++ ++ ++ + + +R +Q
Sbjct: 128 CKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRSHTGFNQ 187
Query: 280 FEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFV 339
+ + V+VKN +D TDE L F + G+I +A VM+D +G++K FGFV
Sbjct: 188 -----------HYTNVVFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFV 236
Query: 340 CFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
F S E AS AV H +++ + +Y + A
Sbjct: 237 SFESHEAASAAVQAVHSSIVNGRQVYCSRAH 267
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 20/200 (10%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L++ +L DV E L + FSK G + S+ + RD S G+ ++ F P DA RA +
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
MN I + Y +Q R+ LR + + ++++KN++ + + L
Sbjct: 72 MNYEPIKGQPCYIMWSQ----RDPSLR------------RSRAGHIFIKNLERSIDHKAL 115
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G I S KV D G +KG GFV F E A A+ +G +L+ + ++V
Sbjct: 116 YDTFSAFGNILSCKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFI 175
Query: 371 RKEDRQAHLQLQYAQHMAGI 390
++DR + QH +
Sbjct: 176 PRKDRS---HTGFNQHYTNV 192
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 160/242 (66%), Gaps = 3/242 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY GDL PDV + L++ F+ +AS+RVC+DS T +S Y Y+NF + DA RA++
Sbjct: 49 ASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 108
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ ++G+ R+ WS RDP R+SG N++VKNL +IDN L + F FGNI+SCKV
Sbjct: 109 TLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKV 168
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A + DGKS+G GFV FE++ESA AAI LNG +G+K +YV +F K +DR SP +T
Sbjct: 169 ALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSP-KNFT 227
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++K++ TEE + E+F FG+I S + D G R F FVNF + AR A+E M
Sbjct: 228 NVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKG--RRFAFVNFAEFEQARAAVEDM 285
Query: 252 NG 253
+G
Sbjct: 286 DG 287
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 127/258 (49%), Gaps = 20/258 (7%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAIE 158
A+L+ +L ++ L E+F G + S +V S KS G+ ++ F A A++
Sbjct: 49 ASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 108
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
LN + + + + D L A N+++KNLD ++ + L + FS FG I
Sbjct: 109 TLNYSPINGRPCRL--MWSHRDPALRRSGAG--NVYVKNLDRNIDNKALYDTFSLFGNIL 164
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S +A +G SRGFGFV+F++ + A A+ +NG IG K +Y A+ +K A+R
Sbjct: 165 SCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSPK 224
Query: 279 QFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
F +NVY+K+I T+E+++ F G ITS + D KG + F F
Sbjct: 225 NF-------------TNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKG--RRFAF 269
Query: 339 VCFSSPEEASKAVNTFHG 356
V F+ E+A AV G
Sbjct: 270 VNFAEFEQARAAVEDMDG 287
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 17/191 (8%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P ++ +L+ +L DV E L E F+ G +AS+ + RD S G+ ++NF N DA
Sbjct: 44 PTQQFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADA 103
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ +N S I + + R+ LR + NVYVKN+D +
Sbjct: 104 ERALDTLNYSPINGRPCRLMWSH----RDPALR------------RSGAGNVYVKNLDRN 147
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV G ++GFGFV F S E A A+ +G + K +
Sbjct: 148 IDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTV 207
Query: 365 YVAIAQRKEDR 375
YVA ++ DR
Sbjct: 208 YVAQFKKTADR 218
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 159/464 (34%), Positives = 242/464 (52%), Gaps = 20/464 (4%)
Query: 1 MAVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNF 60
M+V P T S++VG L P++ + +L+D F +ASVRVC D+ T +S YGYVNF
Sbjct: 1 MSVFP---TASPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNF 57
Query: 61 LSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMF 120
+P DA +A++ + +L K +RI+ RDP R+SGV N+ VK L ++D L+EMF
Sbjct: 58 QNPADAEKALD-QAGVKLGTKHIRIAKIQRDPSKRRSGVTNIVVKKLPSTVDTYALKEMF 116
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180
FG + + +AT E G+S+G+ + +E EESA A+ LNG ++ D I V R+
Sbjct: 117 SKFGRLTAIGLATDEKGESRGYARISYEKEESAVEAVRELNGVSIDDCSITVERYQPHHR 176
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
+YTNL++KNLD V +E L E F+KFG++ S + N +S GF +V +
Sbjct: 177 E---EQLKQYTNLYVKNLDPSVDDEKLKEVFAKFGEVTSAKVRDLGNNSSVGFAYVAYAT 233
Query: 241 PDDARRALEAMN-GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ A +A+E ++ S +K + RE+ R + +R+ + K N+YVK
Sbjct: 234 HEAAAKAVEELDEKSSTLAKEGMKLSVCRFRSREERQRERERVRRERQQQHGKYPNLYVK 293
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKG-INKGFGFVCFSSPEEASKAVNTFHGYM 358
N DD VT E+LK F + G S VM D+ +++ FGFV F AS+A+ HG
Sbjct: 294 NFDDTVTSEKLKELFERFGETVSVSVMMDKATQVSRCFGFVSFKEQSAASQAIQELHGST 353
Query: 359 -LHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVS 415
L +PL+V A RK+ R+ L+ + + SG P L + PP + +
Sbjct: 354 ALGPRPLFVTYALRKDARRQTLE-DIRNKQPRMRQPPMGGLMSGMMAPQLGFMNPPTMFN 412
Query: 416 QVP---PRPGLMYQPLGLRTGWRANGFVP----PTRPAFQVSPL 452
+P PR +M +G+ R P RPA Q P+
Sbjct: 413 GLPFMNPRMPMMPSAMGMGGPMRPMAPAPMNQVRARPAPQRPPM 456
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 53/69 (76%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L+ MLA+ PEQQK +LGERLY + ++ P + AK+TGMLLEMDNSE+L LL+SP L
Sbjct: 483 LSTMLASLPPEQQKNVLGERLYNYIVRNNPSVAAKVTGMLLEMDNSEILNLLDSPSMLDT 542
Query: 596 KVEEAVQVL 604
KV+EA+ VL
Sbjct: 543 KVQEALDVL 551
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 148/449 (32%), Positives = 233/449 (51%), Gaps = 28/449 (6%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
A +P S++VG L P++ + +L+D F +ASVRVC DS T +S YGYVNF +P DA
Sbjct: 6 AASP-SIWVGGLDPNLNEQKLYDHFVRLGPVASVRVCVDSVTQKSLGYGYVNFQNPADAE 64
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
+A++ + +L K +RI+ RDP R+SGV N+ VK L S+D L+EMF +G +
Sbjct: 65 KALD-QAGVKLGSKHIRIAKIQRDPSKRRSGVTNIVVKKLPPSVDTYALKEMFSKYGRLT 123
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
+ +AT+E+G+S+G+ + +E EESA A++ +NG + D I V R+
Sbjct: 124 AIGLATNENGESRGYARISYEKEESAIQAVQEVNGMVIDDCAITVERYQPHHRE---EQL 180
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
++TNL++KNLD V +E L E FS FG++ S + + GF +V + + A +A
Sbjct: 181 KQFTNLYVKNLDPSVNDEKLKEVFSAFGEVTSAKVRDLGANQTVGFAYVAYATHEAAAKA 240
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKY---------KGSNVYV 298
+E ++ + K+ + + R + ++R+ + K N+YV
Sbjct: 241 VEELDEK--------ESPLAKEGMKLSVCRFRSRDERQRERERLRRERQQQHSKYPNLYV 292
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG-INKGFGFVCFSSPEEASKAVNTFHG- 356
KN DD VT E LK F +CG S VM D +++ FGFV F AS+A+ HG
Sbjct: 293 KNFDDTVTSERLKELFERCGETVSVSVMMDRATRVSRCFGFVSFKEQSAASRAIQELHGS 352
Query: 357 YMLHRKPLYVAIAQRKEDRQAHLQ-LQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVS 415
L +PL+V A RK+ R+ L+ ++ Q + + P L + P + +
Sbjct: 353 TALGPRPLFVTYALRKDARRQTLEDMRNKQPRMRQPPMGSLMGGMMGPQLGFMGPQAMFN 412
Query: 416 QVP---PRPGLMYQPLGLRTGWRANGFVP 441
VP PR +M P+G+ R G P
Sbjct: 413 GVPFVNPRMSMMPTPMGMGGQLRPMGPTP 441
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 50/69 (72%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L+ +LA +PEQQK +LGERLY + P AK+TGMLLEMDN E+L LL++P L
Sbjct: 476 LSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDA 535
Query: 596 KVEEAVQVL 604
KV+EA++VL
Sbjct: 536 KVQEALEVL 544
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 221 bits (563), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 109/245 (44%), Positives = 162/245 (66%), Gaps = 3/245 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL PDVT+ L++ F+ ++SVR+C+D+ T RS Y YVN+ S DA RA++
Sbjct: 12 ASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALD 71
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N T + + RI W RDP +R++ N+FVKNL +SIDN L + F FGNI+SCK+
Sbjct: 72 TLNFTCIRSRPCRIMWCLRDPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKI 131
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT +G S G+GF+ FE ESA AI LNG +GD+ IYVG+F +K++R +T
Sbjct: 132 ATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAER-FSEKDKTFT 190
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++K++ +EE L F +GKI+SL++ D G R FGFVNF++P+ A++A+ +
Sbjct: 191 NVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSDSKG--RPFGFVNFEDPESAKKAVANL 248
Query: 252 NGSVI 256
+ +++
Sbjct: 249 HNALV 253
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 189/677 (27%), Positives = 301/677 (44%), Gaps = 133/677 (19%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V +L + + LFD FS F ++ S ++ DS G S YG+++F P A AI
Sbjct: 100 GNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDSE-GNSLGYGFIHFEHPESAKEAIA 158
Query: 72 VKNHTQLHGKMLRISWSCRDPD---ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
N L + + + R + + N++VK++ ++ L +F +G I S
Sbjct: 159 RLNGMILGDRPIYVGKFQRKAERFSEKDKTFTNVYVKHIPKTWSEETLHTLFGVYGKISS 218
Query: 129 CKVATSEDGKSKGHGFVQFETEES---ANAAIENLNGTTVG-------DKRIYVGR---F 175
+ + D K + GFV FE ES A A + N T +G +R G+
Sbjct: 219 LVLQS--DSKGRPFGFVNFEDPESAKKAVANLHNALVTPLGVELNSNNSERTESGKDDGL 276
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF 235
S S +N + + D + +E VEK S DE +
Sbjct: 277 SSISSNTESSDETVESNDYKQRNDKEDPQEADVEKNS------------DEENS------ 318
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN 295
V FD + LY +RAQK+ ER+ +L+ Q E R+ + +Y+G N
Sbjct: 319 VPFD----------------VQPNRLYVSRAQKRNERQVVLKSQHEAARESQN-RYQGVN 361
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
+YVKN+ + +T+ +L++ F GTI+S + DE GI++GFGFV F SP+EA+KA+ H
Sbjct: 362 LYVKNLSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSFLSPDEATKAITEMH 421
Query: 356 GYMLHRKPLYVAIAQRKEDRQAHLQLQY---------------AQHMAGIEGSSANVIPS 400
++ KPLYV + +RKE R LQ + + G+
Sbjct: 422 LKLVRGKPLYVGLHERKEQRALRLQQRIRGGTVPPVLRPGTIPPGPPTAVHGAPMQF--- 478
Query: 401 GYPSLYYTTP--PGIVS-------QVP-----PRPGLMYQPLGLRTGWRANGFVPPTRPA 446
G P Y P P + + + P P G+M P WR N PTR
Sbjct: 479 GAPPQMYFIPGNPAVAATAGMQHNRTPMVGSFPNQGVMASP------WRPN----PTRIP 528
Query: 447 FQVSPLPVNPKHNRQNRGR--------MNGNMLPQVGAHYMQ--QSSQSAASSKDSSNQQ 496
+ LP P+ Q+ G N +PQ G + Q+ ++ +S+ N+
Sbjct: 529 YGTGALP--PQMTAQSVGYNPGVNGIPSNNGSIPQTGPQSVNPAQNIRTGGNSQRIHNRH 586
Query: 497 KGGQSKYVP-NGRIRELNKGSGVSLGTFNS----------GGVMARKPDMLNGM------ 539
GQ P +G ++ K S + GG++ P ++ +
Sbjct: 587 MQGQGGSRPTHGHQVQIPKQSFKFPSHIKTSDQPRVDMIPGGLVNMDPSGISSVPMIPQS 646
Query: 540 --------LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
LA SP QKQ+LGERL+P++ +++P+L KITGM+LEMDN+ELL +L S
Sbjct: 647 DIPLTASTLATASPSMQKQLLGERLFPIIAQYQPELAGKITGMMLEMDNNELLEILNSDA 706
Query: 592 SLAVKVEEAVQVLKLSE 608
+ KV+EA+ VL+ ++
Sbjct: 707 EIKNKVDEAMIVLERAQ 723
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 141/280 (50%), Gaps = 28/280 (10%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158
A+L+V +L + L E+F + + S ++ +S G+ +V + + A A++
Sbjct: 12 ASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALD 71
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN---LFMKNLDSDVTEEHLVEKFSKFG 215
LN T + + + ++ PA++ N +F+KNLD + + L + FS FG
Sbjct: 72 TLNFTCIRSRPCRIMWCLR-------DPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFG 124
Query: 216 KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI 275
I S IA D G S G+GF++F++P+ A+ A+ +NG ++G + +Y + Q+KAER
Sbjct: 125 NIMSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAER--- 181
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG 335
F EK K +NVYVK+I ++E L F G I+S + D KG +
Sbjct: 182 ----FSEKDK------TFTNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSDSKG--RP 229
Query: 336 FGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
FGFV F PE A KAV H ++ PL V + +R
Sbjct: 230 FGFVNFEDPESAKKAVANLHNALV--TPLGVELNSNNSER 267
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/228 (47%), Positives = 155/228 (67%), Gaps = 3/228 (1%)
Query: 28 LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87
L++ FS + S+RVC+D T RS Y YVNF P DA RA++ N + GK +RI W
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQF 147
S RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV E+G SKG+GFV F
Sbjct: 61 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 119
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAKYTNLFMKNLDSDVTEE 205
ET+E+A AIE +NG + D++++VGRF + +R L + A ++TN+++KN D+ +E
Sbjct: 120 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDE 179
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG 253
L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++ MNG
Sbjct: 180 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 227
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 129/245 (52%), Gaps = 16/245 (6%)
Query: 116 LQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGR 174
L E F G I+S +V +S G+ +V F+ A A++ +N + K +
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR--- 57
Query: 175 FIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
I S R + N+F+KNLD + + L + FS FG I S + DENG S+G+G
Sbjct: 58 -IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYG 115
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS 294
FV+F+ + A RA+E MNG ++ + ++ R + + ERE L + +E +
Sbjct: 116 FVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE----------FT 165
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
NVY+KN +D+ DE LK F + G S KVM DE G +KGFGFV F E+A KAV+
Sbjct: 166 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 225
Query: 355 HGYML 359
+G L
Sbjct: 226 NGKEL 230
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 18/174 (10%)
Query: 207 LVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265
L EKFS G I S+ + RD S G+ +VNF P DA RAL+ MN VI K +
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
+Q R+ LR K N+++KN+D + ++ L FS G I S KV
Sbjct: 61 SQ----RDPSLR------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 104
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
+ DE G +KG+GFV F + E A +A+ +G +L+ + ++V + +++R+A L
Sbjct: 105 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 157
>gi|340056243|emb|CCC50573.1| putative polyadenylate-binding protein 1 [Trypanosoma vivax Y486]
Length = 482
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 187/311 (60%), Gaps = 20/311 (6%)
Query: 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQ 146
W RDP R SG N+FVKNL +D+ L +F+ FG I+SCKV + E G+S+G+GFV
Sbjct: 2 WQQRDPALRYSGNGNIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFVH 61
Query: 147 FETEESANAAIENLNG----TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDV 202
F+ + +A AIE++NG +YV FI+++ R L + A +TN+++K L V
Sbjct: 62 FKDDTAAKNAIESMNGDKEHADAAKAALYVANFIRRNAR-LAALVANFTNVYIKQLLPTV 120
Query: 203 TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVI------ 256
++ + + FSKFG I S +D+NG R F F NF+ DDA +A+EA + VI
Sbjct: 121 NKDTIEKFFSKFGGITSAATCKDKNG--RAFAFCNFEKHDDAVKAIEAFHDQVIEGVTPP 178
Query: 257 GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQ 316
G K LY RAQ ++ER LR ++ + + G+N+YV+N D + ++++L F +
Sbjct: 179 GEK-LYVQRAQPRSERLIALRQKYMQ------CQSLGNNLYVRNFDVEFSEKDLHVLFEE 231
Query: 317 CGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQ 376
GTI S +VM D G ++GFGFV F + ++A+ A+ +G ML+ KPL V IAQR++ R
Sbjct: 232 YGTIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRRDQRF 291
Query: 377 AHLQLQYAQHM 387
L++Q+ Q M
Sbjct: 292 MMLRVQFQQRM 302
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 147/290 (50%), Gaps = 23/290 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+++V +L +V EL F F + S +V D GRS YG+V+F A AIE
Sbjct: 16 NIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEG-GRSRGYGFVHFKDDTAAKNAIES 74
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVA-------NLFVKNLIESIDNVRLQEMFQNFGN 125
N + H + + + R + +A N+++K L+ +++ +++ F FG
Sbjct: 75 MNGDKEHADAAKAALYVANFIRRNARLAALVANFTNVYIKQLLPTVNKDTIEKFFSKFGG 134
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIEN-----LNGTTVGDKRIYVGRFIKKSD 180
I S AT +D + F FE + A AIE + G T +++YV R +S+
Sbjct: 135 ITS--AATCKDKNGRAFAFCNFEKHDDAVKAIEAFHDQVIEGVTPPGEKLYVQRAQPRSE 192
Query: 181 RVLPSPAAKY-------TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
R++ + KY NL+++N D + +E+ L F ++G I S + D NG SRGF
Sbjct: 193 RLI-ALRQKYMQCQSLGNNLYVRNFDVEFSEKDLHVLFEEYGTIRSCRVMTDANGNSRGF 251
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
GFV+F+N D A AL MNG ++ K L AQ++ +R +LR QF+++
Sbjct: 252 GFVSFENADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRVQFQQR 301
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 546 EQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
E+Q+ LG+RLY V + PD KITGM LEMD + +LL + + L KV EA+ VLK
Sbjct: 417 EEQRAALGDRLYIKVYEIAPDYAPKITGMFLEMDMKDAFVLLSNQKLLEDKVTEALCVLK 476
Query: 606 L 606
+
Sbjct: 477 V 477
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 177/324 (54%), Gaps = 48/324 (14%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
++ T ASLYVGDLHPDV + LF+ FS + S+RVC+D+ T S Y YVNF P DA
Sbjct: 27 SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADA 86
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL------------------- 107
RA++ N LHGK +RI WS RDP R+SG N+F+KNL
Sbjct: 87 ERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELG 146
Query: 108 --IESIDNV------------RLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153
+ NV L+++F FGNI SC+V T E GKSKG GFV F E A
Sbjct: 147 ETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEA 205
Query: 154 NAAIENLNGTTV--GDKRIYVGRFIKKSDRVL----------PSPAAKY--TNLFMKNLD 199
A++ L+ +T+ D +++V R KKS+R KY NL++KNLD
Sbjct: 206 ETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLD 265
Query: 200 SDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK 259
V ++ L ++F +G I S + DENG S+GFGFV F+ P++A A+ MN ++ SK
Sbjct: 266 ETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSK 325
Query: 260 VLYAARAQKKAEREQILRHQFEEK 283
LY A AQ+K +R L Q+ ++
Sbjct: 326 PLYVAIAQRKEDRRAQLASQYMQR 349
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 131/346 (37%), Positives = 195/346 (56%), Gaps = 37/346 (10%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFETEESANAAI 157
+A+L+V +L ++ L E F G ++S +V + S G+ +V F+ A A+
Sbjct: 31 MASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAM 90
Query: 158 ENLNGTTVGDK---------------------------RIYVGRFIKKS--DRVLPSPAA 188
+ +N + K +++VG+F ++ +R L A
Sbjct: 91 DTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGETAK 150
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
++TN+++KN +E L + F+KFG I S + E G S+GFGFV F NP++A A+
Sbjct: 151 QFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAV 209
Query: 249 EAMNGSVI-GSKV-LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+A++ S I G+ + L+ RAQKK+ER L+ + E+ + ER+ KY+G N+YVKN+D+ V
Sbjct: 210 QALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVD 269
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
D+ LK F G ITSAKVM DE G +KGFGFVCF PEEA+ AV + M+ KPLYV
Sbjct: 270 DDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 329
Query: 367 AIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG 412
AIAQRKEDR+A L QY Q +A + NV + ++Y T PG
Sbjct: 330 AIAQRKEDRRAQLASQYMQRLASMR-MHGNVPGA---AMYNPTQPG 371
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 27/213 (12%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TA ++YV + L F++F ++ S V + G+S +G+V F +P +A
Sbjct: 148 TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEA 205
Query: 67 IRAIEVKNHTQLHGKMLRI------SWSCRDPDARK-------------SGVANLFVKNL 107
A++ + + + G L++ S R + +K GV NL+VKNL
Sbjct: 206 ETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGV-NLYVKNL 264
Query: 108 IESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD 167
E++D+ L++ F+++GNI S KV T E+G+SKG GFV FE E A +A+ +N V
Sbjct: 265 DETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCS 324
Query: 168 KRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
K +YV +K DR A+ + +M+ L S
Sbjct: 325 KPLYVAIAQRKEDR-----RAQLASQYMQRLAS 352
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Query: 526 GGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDL--VAKITGMLLEMDNSEL 583
G V+ + + + MLAA +P++QKQ+LGER+Y L+EK P KITGM+LE+DNSEL
Sbjct: 500 GIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSEL 559
Query: 584 LLLLESPESLAVKVEEAVQVL 604
+++L+ E KV+EA VL
Sbjct: 560 IMMLQDSELFRSKVDEAASVL 580
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG-INKGFGFVCFSSPEEASK 349
Y +++YV ++ DV + L FS G + S +V RD ++ G+ +V F P +A +
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + LH KP+ + +QR
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQR 110
>gi|146101854|ref|XP_001469222.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|398023673|ref|XP_003864998.1| poly(a) binding protein, putative [Leishmania donovani]
gi|134073591|emb|CAM72325.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|322503234|emb|CBZ38319.1| poly(a) binding protein, putative [Leishmania donovani]
Length = 585
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 212/374 (56%), Gaps = 12/374 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
S++VG L PD+ + +L+D F + SVRVC DS T +S YGYVNF P DA +A++
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALD- 67
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
+ ++L + LRI+ RDP R+SGV N+ VK L +S+D L+EMF FG + + +A
Sbjct: 68 QAGSKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF-IKKSDRVLPSPAAKYT 191
E G+S+G+ + FE EESA A+ ++G + + I V R+ + D +L ++T
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQAQHRDELL----KQFT 183
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG--TSRGFGFVNFDNPDDARRALE 249
NL++KNLD VT+E L F+K+G+++S + RD + G G+V F +DA RA+E
Sbjct: 184 NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHEDAARAVE 242
Query: 250 AMNGSVIG-SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG SK + RE+ R + ++R+ K N+YVK DD VT E
Sbjct: 243 ELNGKECEISKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSE 302
Query: 309 ELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHG-YMLHRKPLYV 366
L+ F + G S VM D E G+++ FGFV AS+A+ +G L +PL+V
Sbjct: 303 RLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFV 362
Query: 367 AIAQRKEDRQAHLQ 380
A RK+ R+ +L+
Sbjct: 363 TYALRKDARRQNLE 376
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L +LA +PEQQK +LGERLY + + P + AKITGMLLEMDNSE+L +L+SP L
Sbjct: 511 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILNMLDSPTMLDS 570
Query: 596 KVEEAVQVL 604
K+ EA VL
Sbjct: 571 KIAEAQDVL 579
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 137/379 (36%), Positives = 214/379 (56%), Gaps = 22/379 (5%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
S++VG L PD+ + L+D F + SVRVC DS T +S YGYVNF P DA +A++
Sbjct: 9 SIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALD- 67
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
+ T+L + LRI+ RDP R+SGV N+ VK L +++D L+E+F FG + + +A
Sbjct: 68 QAGTKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKTVDTYALKELFSKFGRLTAIGLA 127
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF-IKKSDRVLPSPAAKYT 191
E G+S+G+ + FE EESA A++ ++G + + I V R+ + D +L ++T
Sbjct: 128 CDEKGESRGYARISFEREESAVEAVKEMDGMEMDGQAIVVERYQAQHRDELL----KQFT 183
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSR--GFGFVNFDNPDDARRALE 249
NL++KNLD VT+E L F+++G ++S + RD G G G+V F+ +DA RA+E
Sbjct: 184 NLYVKNLDPAVTDEKLRAFFARYGAVSSAKV-RDLGGVQSEVGLGYVAFEKHEDAARAVE 242
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKY------KGSNVYVKNIDD 303
+NG K A+A+ + + + ++ +ER + K N+YVK DD
Sbjct: 243 ELNG-----KECEIAKAESTLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDD 297
Query: 304 DVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHG-YMLHR 361
VT E L+ F + G S VM D E G+++ FGFV AS+A+ +G L
Sbjct: 298 TVTSERLEELFQRYGETVSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQELNGSTFLCP 357
Query: 362 KPLYVAIAQRKEDRQAHLQ 380
+PL+V A RK+ R+ +L+
Sbjct: 358 RPLFVTYALRKDARRQNLE 376
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L +LA +PEQQK +LGERLY + + P + AKITGMLLEMDNSE+L +L+SP L
Sbjct: 505 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILSMLDSPVMLDS 564
Query: 596 KVEEAVQVL 604
K+ EA VL
Sbjct: 565 KIAEAQDVL 573
>gi|401429856|ref|XP_003879410.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495660|emb|CBZ30966.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 594
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 212/374 (56%), Gaps = 12/374 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
S++VG L PD+ + +L+D F + SVRVC DS T +S YGYVNF P DA +A++
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALD- 67
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
+ ++L + LRI+ RDP R+SGV N+ VK L +S+D L+EMF FG + + +A
Sbjct: 68 QAGSKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF-IKKSDRVLPSPAAKYT 191
E G+S+G+ + FE EESA A+ ++G + + I V R+ + D +L ++T
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQAQHRDELL----KQFT 183
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG--TSRGFGFVNFDNPDDARRALE 249
NL++KNLD VT+E L F+K+G+++S + RD + G G+V F +DA RA+E
Sbjct: 184 NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHEDAARAVE 242
Query: 250 AMNGSVIG-SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG +K + RE+ R + ++R+ K N+YVK DD VT E
Sbjct: 243 ELNGKECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSE 302
Query: 309 ELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHG-YMLHRKPLYV 366
L+ F + G S VM D E G+++ FGFV AS+A+ +G L +PL+V
Sbjct: 303 RLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFV 362
Query: 367 AIAQRKEDRQAHLQ 380
A RK+ R+ +L+
Sbjct: 363 TYALRKDARRQNLE 376
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L +LA +PEQQK +LGERLY + + P + AKITGMLLEMDNSE+L +L+SP L
Sbjct: 520 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILNMLDSPTMLDS 579
Query: 596 KVEEAVQVL 604
K+ EA VL
Sbjct: 580 KIAEAQDVL 588
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 102/190 (53%), Positives = 144/190 (75%), Gaps = 1/190 (0%)
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 1 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 60
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 120
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 121 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 179
Query: 370 QRKEDRQAHL 379
QRKE+R+AHL
Sbjct: 180 QRKEERKAHL 189
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 113/185 (61%), Gaps = 13/185 (7%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
N+++KN E +D+ L+E+F FG +S KV +GKSKG GFV +E E AN A+E
Sbjct: 2 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 61
Query: 160 LNGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSDVTEEHL 207
+NG + K I+VGR KK +R + ++Y NL++KNLD + +E L
Sbjct: 62 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 121
Query: 208 VEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267
++FS FG I S + E+G S+GFGFV F +P++A +A+ MNG ++GSK LY A AQ
Sbjct: 122 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 180
Query: 268 KKAER 272
+K ER
Sbjct: 181 RKEER 185
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 103/187 (55%), Gaps = 20/187 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++Y+ + +V D L + FS+F SV+V +D G+S +G+V++ DA +A+E
Sbjct: 2 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 60
Query: 72 VKNHTQLHGKMLRISWSCRDPD-----------------ARKSGVANLFVKNLIESIDNV 114
N ++ GK++ + + + + +R GV NL++KNL ++ID+
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDE 119
Query: 115 RLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGR 174
+L++ F FG+I S KV EDG+SKG GFV F + E A A+ +NG VG K +YV
Sbjct: 120 KLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 178
Query: 175 FIKKSDR 181
+K +R
Sbjct: 179 AQRKEER 185
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 60/92 (65%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
+NVY+KN ++V DE LK FSQ G S KVMRD G +KGFGFV + E+A+KAV
Sbjct: 2 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 61
Query: 354 FHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
+G + K ++V AQ+K +RQA L+ ++ Q
Sbjct: 62 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 93
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+LY+ +L + D +L FS F S+ S +V + GRS +G+V F SP +A +A+
Sbjct: 105 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 162
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVAN 101
N + K L ++ + R + RK+ + N
Sbjct: 163 EMNGRIVGSKPLYVALAQR-KEERKAHLTN 191
>gi|389595175|ref|XP_003722810.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
gi|323364038|emb|CBZ13044.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
Length = 594
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/374 (36%), Positives = 212/374 (56%), Gaps = 12/374 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
S++VG L PD+ + +L+D F + SVRVC DS T +S YGYVNF P DA +A++
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALD- 67
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
+ ++L + LRI+ RDP R+SGV N+ VK L +S+D L+EMF FG + + +A
Sbjct: 68 QAGSKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF-IKKSDRVLPSPAAKYT 191
E G+S+G+ + FE EESA A+ ++G + + I V R+ + D +L ++T
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQAQHRDELL----KQFT 183
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG--TSRGFGFVNFDNPDDARRALE 249
NL++KNLD VT+E L F+K+G+++S + RD + G G+V F ++A RA+E
Sbjct: 184 NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAAQSEAGLGYVAFQKHENAARAVE 242
Query: 250 AMNGSVIG-SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG +K + RE+ R + ++R+ K N+YVK DD VT E
Sbjct: 243 ELNGKECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSE 302
Query: 309 ELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHG-YMLHRKPLYV 366
L+ F + G S VM D E G+++ FGFV AS+A+ +G L +PL+V
Sbjct: 303 RLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFV 362
Query: 367 AIAQRKEDRQAHLQ 380
A RK+ R+ +L+
Sbjct: 363 TYALRKDARRQNLE 376
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 49/69 (71%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L +LA +PEQQK +LGERLY + + P + AKITGMLLEMDN+E+L +L+SP L
Sbjct: 520 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNAEILNMLDSPTMLDS 579
Query: 596 KVEEAVQVL 604
K+ EA VL
Sbjct: 580 KIAEAQDVL 588
>gi|340056333|emb|CCC50664.1| poly(A)-binding protein [Trypanosoma vivax Y486]
Length = 548
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 151/449 (33%), Positives = 236/449 (52%), Gaps = 24/449 (5%)
Query: 8 ATTPA---SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
+T PA S++VG L P++ + +L+D F +ASVRVC D+ T +S YGYVNF +P
Sbjct: 2 STFPAASPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPA 61
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
DA +A++ + +L K +RI+ RDP R+SGV N+ VK L ++D L+EMF +G
Sbjct: 62 DAEKALD-QAGVKLGSKHIRIARIQRDPSKRRSGVTNIVVKKLPPTVDTYALKEMFSKYG 120
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP 184
+ + +AT+E G+S+G+ + +E EESA A++ +NG T+ D I V R+
Sbjct: 121 RLTAIGLATNEKGESRGYARISYEKEESAIEAVQGVNGMTIDDCPITVERYQPHHRE--- 177
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG-TSRGFGFVNFDNPDD 243
YTNL++KNLD V +E L E FS +G++ S + RD G S GF +V + +
Sbjct: 178 EQLKLYTNLYVKNLDPSVGDEKLKEVFSAYGEVTSAKV-RDLGGKMSVGFAYVAYATHEA 236
Query: 244 ARRALEAMNG-----SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298
A +A+E ++ + G K+ ++ + + + +R+ + L K N+YV
Sbjct: 237 AVKAVEELDDKENPLAKEGMKLSVCRFRSREERQRE----RERLRRERQQLYSKYPNLYV 292
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGY 357
KN DD VT E LK F + G S VM D+ +++ FGFV F AS+A+ HG
Sbjct: 293 KNFDDTVTSERLKELFERFGETVSVSVMVDKATKVSRCFGFVSFKEQNSASRAIQELHGS 352
Query: 358 M-LHRKPLYVAIAQRKEDRQAHLQ-LQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVS 415
L +PL+V A RK+ R+ L+ ++ Q + P L + PP + +
Sbjct: 353 TALGPRPLFVTYALRKDARRQTLEDMRNKQPRMRQTPMGGLMGGMMGPQLGFMNPPAMFN 412
Query: 416 QVP---PRPGLMYQPLGLRTGWRANGFVP 441
VP R +M +G+ R G P
Sbjct: 413 GVPFMNTRMPMMPNAMGMGGPMRPLGPTP 441
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 53/69 (76%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L+ MLA +PEQQK +LGERLY + + P + AK+TGMLLEMDNSE+L LL++P L
Sbjct: 474 LSTMLANLTPEQQKNVLGERLYNHIVRVNPSVAAKVTGMLLEMDNSEILNLLDTPGLLDT 533
Query: 596 KVEEAVQVL 604
KV+EA++VL
Sbjct: 534 KVQEALEVL 542
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 112/278 (40%), Positives = 161/278 (57%), Gaps = 31/278 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDLHPDVT+ L++ FS ++ S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP R+SG+ N+F+KNL SIDN L + F FG+I+S KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
+E G S+G GFV FET E+A AI +NG + D+++ +SD
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKV-------RSD----------- 171
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
+ +L S I+S E+ S+GFGFV F +P++A +A+ M
Sbjct: 172 --YPWSLAS----------LCPATLISSCFQVMTESSHSKGFGFVCFSSPEEATKAVTEM 219
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERIL 289
NG ++G+K LY A AQ+K ER+ IL +Q+ + +L
Sbjct: 220 NGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVL 257
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 171/541 (31%), Positives = 252/541 (46%), Gaps = 100/541 (18%)
Query: 93 DARKSG--VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFET 149
D R G +++L+V +L + L EMF G I+S +V +S G+ ++ F+
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + I I S R + N+F+KNL++ + + L +
Sbjct: 62 PADAERALDTMNFEMIKGQPIR----IMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + +E+G SRGFGFV+F+ + A++A+ MNG ++
Sbjct: 118 TFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLL------------- 163
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
RK R Y S A I+S + E
Sbjct: 164 ------------NDRKVRS-DYPWS----------------LASLCPATLISSCFQVMTE 194
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMA- 388
+KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+R+A L QY + ++
Sbjct: 195 SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSR 254
Query: 389 ----GIEGSSANVIPSGYPS----LYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFV 440
+ ++ ++P+ + S +YY++ ++ + P P QP G +
Sbjct: 255 SVLSSFQQPTSYLLPAVHQSTTQTMYYSS--ASIAPMQPDPRWTAQPHG------PSSTC 306
Query: 441 PPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSN-----Q 495
PP A V PL P P + Q+S ++ N
Sbjct: 307 PPA--ASVVQPLSTAPH--------------PCIHLSSASQASSQVPHTQRVVNIGTQTT 350
Query: 496 QKGGQSKYVPNGRIRELNKGS-------GVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQ 548
GG+ +P G+ ++GS GV T G +P ++ + AAP EQ
Sbjct: 351 GPGGEGSCIP-GQPLLAHRGSSAVHSAHGVQESTVYVPG---HQPLTVSMLDAAPLHEQ- 405
Query: 549 KQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSE 608
KQ++GERLY L+ L KITGMLLEMDN ELLLLLESPESL K+EEAV VLK
Sbjct: 406 KQMIGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLESPESLHAKIEEAVAVLKAHR 465
Query: 609 A 609
A
Sbjct: 466 A 466
>gi|62751624|ref|NP_001015753.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
gi|58476781|gb|AAH89689.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
Length = 217
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 142/206 (68%), Gaps = 3/206 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+ FV FET+++A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFG 215
+TN+++KN D+ +E L E FSK+G
Sbjct: 190 FTNVYIKNFGEDMDDERLKETFSKYG 215
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 16/222 (7%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I I S R + N+F+KNLD + + L + FS FG I
Sbjct: 70 DTMNFDVIKGKPIR----IMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G+ FV+F+ D A RA+E MNG ++ + ++ R + + ERE L
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELG 184
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT 319
+ +E +NVY+KN +D+ DE LK FS+ G
Sbjct: 185 AKAKE----------FTNVYIKNFGEDMDDERLKETFSKYGC 216
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 18/189 (9%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L++ +L DVTE L EKFS G + S+ + RD S G+ +VNF P DA RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
MN VI K + +Q R+ LR K NV++KN+D + ++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDKSIDNKAL 115
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G I S KV+ DE G +KG+ FV F + + A +A+ +G +L+ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 371 RKEDRQAHL 379
+ +R+A L
Sbjct: 175 CRREREAEL 183
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|399950033|gb|AFP65689.1| polyadenylate-binding protein [Chroomonas mesostigmatica CCMP1168]
Length = 490
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 181/313 (57%), Gaps = 6/313 (1%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P SLYVGDL V + L FS+ + S+++C+D +TG S Y YVNFL+P DA +A
Sbjct: 34 PCSLYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKDAQKAF 93
Query: 71 EVKNHTQ---LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
++ N+ LH K LRI W +D R SG NLF+KN+ DN L ++F FG I+
Sbjct: 94 KLLNYYTDETLHYKPLRIMWVQKDKSLRFSGTGNLFIKNIPRRYDNKSLSKLFSQFGKIL 153
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR-VLPSP 186
SCK+A E+ +S G+GFV ++ E+ + AIE +N + ++I+VG FI K R +
Sbjct: 154 SCKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFISKVKRNNRNNS 213
Query: 187 AAKYTNLFMKN-LDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
++TN+++KN L + E ++ + F FG I S+ I + N GF FVNF+NP+DA
Sbjct: 214 KLRFTNVYIKNILFQNCNEIYIKDLFEIFGPITSIFIPK-ANEAPLGFAFVNFENPEDAE 272
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
A+ MNG I K LY +A+ + ER++ L +F +K+ ++ YK ++ ++ +
Sbjct: 273 DAIFKMNGKKIKGKTLYVGKAETRIERQRRLAKKFLDKKMSKVCFYKKLMFFISDVPIFI 332
Query: 306 TDEELKAHFSQCG 318
+ L + + + G
Sbjct: 333 KSKILTSAYLKIG 345
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 146/300 (48%), Gaps = 30/300 (10%)
Query: 95 RKSGVAN---LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETE 150
RK + N L+V +L ++ L ++F G + S ++ G S+G+ +V F
Sbjct: 27 RKIKIKNPCSLYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNP 86
Query: 151 ESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL---PSPAAKYT---NLFMKNLDSDVTE 204
+ A A + LN T D+ ++ K R++ + +++ NLF+KN+
Sbjct: 87 KDAQKAFKLLNYYT--DETLHY-----KPLRIMWVQKDKSLRFSGTGNLFIKNIPRRYDN 139
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
+ L + FS+FGKI S IA DEN S G+GFV++ D+++A+E MN I + ++
Sbjct: 140 KSLSKLFSQFGKILSCKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVG 199
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE-ELKAHFSQCGTITSA 323
K +R R L++ +NVY+KNI +E +K F G ITS
Sbjct: 200 PFISKVKRNN---------RNNSKLRF--TNVYIKNILFQNCNEIYIKDLFEIFGPITSI 248
Query: 324 KVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+ + + GF FV F +PE+A A+ +G + K LYV A+ + +RQ L ++
Sbjct: 249 FIPKANEA-PLGFAFVNFENPEDAEDAIFKMNGKKIKGKTLYVGKAETRIERQRRLAKKF 307
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/204 (49%), Positives = 143/204 (70%), Gaps = 2/204 (0%)
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
A++ N + K +RI WS RDP RKSGV N+F+KNL +SIDN + + F FGNI+S
Sbjct: 1 ALDTMNFDPIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILS 60
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSP 186
C+VAT E+ SKG+GFV FETEE+AN AI +NG + K+++VGRFI K+ +R+L
Sbjct: 61 CRVATDEEANSKGYGFVHFETEEAANNAISKVNGMLLNGKKVFVGRFIPRKERERLLGDK 120
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
A ++TN+++KN ++ +E LV F K+GK+ S + DENG +RGFGFV+F++P+ A +
Sbjct: 121 ARRFTNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEK 180
Query: 247 ALEAMNGSVIGSKVLYAARAQKKA 270
A+E +NG +G K LY RAQKKA
Sbjct: 181 AVEELNGKDVGGKPLYVGRAQKKA 204
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 10/181 (5%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+F+KNLD + + + + FS FG I S +A DE S+G+GFV+F+ + A A+ +
Sbjct: 33 NVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNAISKV 92
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG ++ K ++ R + ERE++L + + +NVY+KN D++ DE+L
Sbjct: 93 NGMLLNGKKVFVGRFIPRKERERLLGDK----------ARRFTNVYIKNFGDELDDEKLV 142
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F + G +TSAKVM DE G N+GFGFV F PE A KAV +G + KPLYV AQ+
Sbjct: 143 VIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYVGRAQK 202
Query: 372 K 372
K
Sbjct: 203 K 203
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +L + + ++D FS F ++ S RV D S YG+V+F + A AI
Sbjct: 32 GNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEA-NSKGYGFVHFETEEAANNAIS 90
Query: 72 VKNHTQLHGKMLRIS-WSCRDPDARKSG-----VANLFVKNLIESIDNVRLQEMFQNFGN 125
N L+GK + + + R R G N+++KN + +D+ +L +F +G
Sbjct: 91 KVNGMLLNGKKVFVGRFIPRKERERLLGDKARRFTNVYIKNFGDELDDEKLVVIFDKYGK 150
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
+ S KV E+GK++G GFV FE E A A+E LNG VG K +YVGR KK+
Sbjct: 151 VTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYVGRAQKKA 204
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 52/85 (61%)
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
NV++KN+D + ++ + FS G I S +V DE+ +KG+GFV F + E A+ A++
Sbjct: 33 NVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNAISKV 92
Query: 355 HGYMLHRKPLYVAIAQRKEDRQAHL 379
+G +L+ K ++V +++R+ L
Sbjct: 93 NGMLLNGKKVFVGRFIPRKERERLL 117
>gi|52221255|gb|AAU29548.1| poly(A)-binding protein [Crithidia fasciculata]
Length = 564
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 214/374 (57%), Gaps = 12/374 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
S++VG L P++ + +L+D F +ASVRVC DS T +S YGYVNF P DA +A++
Sbjct: 9 SIWVGGLDPELNEQKLYDYFVRIGPVASVRVCVDSATQKSLGYGYVNFQDPSDAEKALD- 67
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
+ +L + LRI+ RDP R+SGV N+ VK L +S+D L+EMF +G + + +A
Sbjct: 68 QAGAKLGTRFLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTFALKEMFGKYGRLTAIGLA 127
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF-IKKSDRVLPSPAAKYT 191
E G+S+G+ + FE EESA A++ ++G + + I V R+ + D +L ++T
Sbjct: 128 CDERGESRGYARISFEREESAVDAVKEMDGMEMDGQAIVVERYQAQHRDEML----KQFT 183
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD--ENGTSRGFGFVNFDNPDDARRALE 249
NL++KNL+ VT+ L F+K+G+++S + RD + + GFG+V F+ +DA +A+E
Sbjct: 184 NLYVKNLEPTVTDSKLRAFFAKYGEVSSAKV-RDLGDAQSEVGFGYVAFEKHEDAAKAVE 242
Query: 250 AMNGSVIG-SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+NG +K + RE+ R + ++R+ K N+YVK DD VT E
Sbjct: 243 ELNGKECEIAKAGAPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSE 302
Query: 309 ELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHG-YMLHRKPLYV 366
L+ F + G S VM D + G+++ FGFV AS A+ +G L +PL+V
Sbjct: 303 RLEELFQRYGETVSVTVMTDKDTGMSRCFGFVSMKDQGAASHAIQDLNGSTFLSPRPLFV 362
Query: 367 AIAQRKEDRQAHLQ 380
A RK+ R+ +L+
Sbjct: 363 TYALRKDARRQNLE 376
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 50/69 (72%)
Query: 536 LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
L +LA +PEQQK +LGERLY + ++ P + AKITGMLLEMDNSE+L +L+SP L
Sbjct: 490 LAAVLANLNPEQQKNVLGERLYSYIVRNHPSVAAKITGMLLEMDNSEILNMLDSPVVLDS 549
Query: 596 KVEEAVQVL 604
K+ EA VL
Sbjct: 550 KIAEAQDVL 558
>gi|294939182|ref|XP_002782349.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
Length = 266
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 143/211 (67%), Gaps = 1/211 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY GDL PDV + L++ F+ +AS+RVC+DS T +S Y Y+NF + DA RA++
Sbjct: 48 ASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD 107
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ ++G+ R+ WS RDP R+SG N++VKNL +IDN L + F FGNI+SCKV
Sbjct: 108 TLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKV 167
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
A + DGKS+G GFV FE++ESA AAI LNG +G+K +YV +F K +DR SP +T
Sbjct: 168 ALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSP-KNFT 226
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222
N+++K++ TEE + E+F FG+I S +
Sbjct: 227 NVYIKHIPPSWTEEKIREEFGAFGEITSFAM 257
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 23/238 (9%)
Query: 91 DPDARKSGV-----ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGF 144
DP GV A+L+ +L ++ L E+F G + S +V S KS G+ +
Sbjct: 34 DPAPTVGGVPTQQFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAY 93
Query: 145 VQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTE 204
+ F A A++ LN + + + + D L A N+++KNLD ++
Sbjct: 94 INFHNVADAERALDTLNYSPINGRPCRL--MWSHRDPALRRSGAG--NVYVKNLDRNIDN 149
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
+ L + FS FG I S +A +G SRGFGFV+F++ + A A+ +NG IG K +Y A
Sbjct: 150 KALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 209
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITS 322
+ +K A+R F +NVY+K+I T+E+++ F G ITS
Sbjct: 210 QFKKTADRSDGSPKNF-------------TNVYIKHIPPSWTEEKIREEFGAFGEITS 254
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 17/191 (8%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDA 244
P ++ +L+ +L DV E L E F+ G +AS+ + RD S G+ ++NF N DA
Sbjct: 43 PTQQFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADA 102
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ +N S I + + R+ LR + NVYVKN+D +
Sbjct: 103 ERALDTLNYSPINGRPCRLMWSH----RDPALR------------RSGAGNVYVKNLDRN 146
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ L FS G I S KV G ++GFGFV F S E A A+ +G + K +
Sbjct: 147 IDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTV 206
Query: 365 YVAIAQRKEDR 375
YVA ++ DR
Sbjct: 207 YVAQFKKTADR 217
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++YV +L ++ + L+D FS F ++ S +V + G+S +G+V+F S A AI
Sbjct: 136 GNVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL-TPDGKSRGFGFVHFESDESAEAAIA 194
Query: 72 VKNHTQLHGKMLRISW---SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
N Q+ K + ++ + D N+++K++ S +++E F FG I S
Sbjct: 195 KLNGMQIGEKTVYVAQFKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITS 254
Query: 129 CKVAT 133
+ T
Sbjct: 255 FAMQT 259
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 141/212 (66%), Gaps = 3/212 (1%)
Query: 1 MAVVPPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVN 59
M++ P P ASLYVGDLH DVT+ LF+ FS + S+RVC+D RS Y YVN
Sbjct: 1 MSLNPNGPNYPVASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVN 60
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
F P DA RA++ N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN + +
Sbjct: 61 FQQPVDAERALDTMNFDMVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDT 120
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FGNI+SCKVAT E+ SKG+GFV FETEE+AN AI+ +NG + ++++VG+F+ +S
Sbjct: 121 FSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRS 180
Query: 180 DR--VLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
+R L A ++ N+++KN D+ +E L E
Sbjct: 181 EREKQLGQKARRFMNVYIKNFGDDLDDEKLRE 212
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 17/195 (8%)
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGT-SRGFGFVNFDNPDDA 244
P +L++ +L +DVTE L EKFS G + S+ + RD S G+ +VNF P DA
Sbjct: 8 PNYPVASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDA 67
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
RAL+ MN ++ + + +Q R+ LR K NV++KN+D
Sbjct: 68 ERALDTMNFDMVKGRPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDKS 111
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ ++ + FS G I S KV DE+ +KG+GFV F + E A+ A+ +G +L+ + +
Sbjct: 112 IDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKV 171
Query: 365 YVAIAQRKEDRQAHL 379
+V + +R+ L
Sbjct: 172 FVGKFVPRSEREKQL 186
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 114/222 (51%), Gaps = 15/222 (6%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFET 149
+P+ VA+L+V +L + L E F + G ++S +V + S G+ +V F+
Sbjct: 4 NPNGPNYPVASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQ 63
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N V + I I S R + N+F+KNLD + + + +
Sbjct: 64 PVDAERALDTMNFDMVKGRPIR----IMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 119
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S +A DE S+G+GFV+F+ + A A++ +NG ++ + ++ + +
Sbjct: 120 TFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPR 179
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
+ERE+ L ++ R + NVY+KN DD+ DE+L+
Sbjct: 180 SEREKQL-----GQKARRFM-----NVYIKNFGDDLDDEKLR 211
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +L + + ++D FS F ++ S +V D + S YG+V+F + A AI+
Sbjct: 101 GNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESN-SKGYGFVHFETEEAANNAIQ 159
Query: 72 VKNHTQLHGKMLRI-SWSCRDPDARKSG-----VANLFVKNLIESIDNVRLQEMFQ 121
N L+G+ + + + R ++ G N+++KN + +D+ +L+EM +
Sbjct: 160 KVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGDDLDDEKLREMLR 215
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 202/390 (51%), Gaps = 22/390 (5%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++YVGDL P D +LF FS + ++++ K + S + +V F + DA +A+
Sbjct: 15 TIYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGESAPS--FAFVTFENEEDAEKAVRE 72
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
H +LH + +R+ D R N+FVKNL ES + L + F FG I+SCKVA
Sbjct: 73 YKHYELHDRQIRVMRK----DERPPETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVA 128
Query: 133 TSEDGKSKGHGFVQFETEESANAAIE---NLNGTTVGDKRIYVGRF---IKKSDRVLPSP 186
T+ GKSKG+GFVQF+ + SA I+ NLNG +G +I V + +KK +
Sbjct: 129 TTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKGES--KKV 186
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
+ +TN F+KN V E+ L++ K+GK+ SL ++G +GF F NF+ + A
Sbjct: 187 STMFTNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETHESALN 246
Query: 247 ALEAMNGSV------IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
A+ ++G+ G + Y + QK+ ER ++LR FE+ + YK N+Y+ N
Sbjct: 247 AINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQLSMQG-QNYK-KNLYITN 304
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
I + EEL F + G+ITS V D K + ++C+S+PEEAS AV + L
Sbjct: 305 IPEGFGAEELSNIFKEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVERGNEIYLD 364
Query: 361 RKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
L VA + K +R + + GI
Sbjct: 365 GNRLQVAYFKNKLERMKEKEFGGLGYKPGI 394
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 161/256 (62%), Gaps = 4/256 (1%)
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
+EV N+ +L GK +RI +S RDP R SG N+FVKNL ESIDN +L +MF FG ++SC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
KVA G SKG+GFVQF ++ S A NGT + ++ I+V F+ + +
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQ---WDKSRV 117
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL T+ L F +FG+I S ++ +D G SR FGFVNF+ + A A+E
Sbjct: 118 FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKY-KGSNVYVKNIDDDVTDE 308
MNG V+ K L+ RAQ+K R + L+ +FE ++ R +K KG N+YVKN+DD V +
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 309 ELKAHFSQCGTITSAK 324
+L+ FS+ GTITS K
Sbjct: 238 KLEELFSEFGTITSCK 253
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 15/192 (7%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+F+KNLD + + L + FS FGK+ S +ARD +G S+G+GFV F + A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG++I ++ ++ + R Q++ K R+ +NVYVKN+ + TD +LK
Sbjct: 92 NGTLIRNQHIHVC--------PFVSRGQWD---KSRVF----TNVYVKNLVETATDADLK 136
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F + G ITSA VM+D +G ++ FGFV F E A A+ +G ++ K L+V AQR
Sbjct: 137 RLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQR 196
Query: 372 KEDRQAHLQLQY 383
K +R L+ ++
Sbjct: 197 KTNRTEDLKAKF 208
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 22/142 (15%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++YV +L TD +L F EF + S V KD G+S +G+VNF A+ AIE
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIE 177
Query: 72 VKNHTQLHGKMLRISWS-------------------CRDPDARKSGVANLFVKNLIESID 112
N + K L + + RD RK NL+VKNL +S+D
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKG--MNLYVKNLDDSVD 235
Query: 113 NVRLQEMFQNFGNIISCKVATS 134
N +L+E+F FG I SCK A +
Sbjct: 236 NTKLEELFSEFGTITSCKYACN 257
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/249 (45%), Positives = 155/249 (62%), Gaps = 13/249 (5%)
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
A +TN+++K+ ++ +E L E F K+G I S + ++G RGFGFV F+NP+ A
Sbjct: 3 AKLFTNVYVKDFGDELNDETLKEMFEKYGTITSHRVM-IKDGKGRGFGFVAFENPESAEH 61
Query: 247 ALEAMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
A++ +NG +G K+LY RAQKK ER+ L+ +FE+ + ER+ +Y+G N+YVKN+DD +
Sbjct: 62 AVQELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSI 121
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS-PEEASKAVNTFHGYMLHRKPL 364
DE L+ FS GTITSAKVM +E G +KGFGFV FS EEA+KAV +G ++ KPL
Sbjct: 122 DDERLRKEFSPFGTITSAKVMLEE-GRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPL 180
Query: 365 YVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI--PSGYPSLYYTTPP-------GIVS 415
YVA+AQR EDR+AHL QY Q MA + I P G Y T P VS
Sbjct: 181 YVALAQRTEDRKAHLASQYMQRMANMRMQHMGQIFQPGGNGGYYVPTLPQPQRFFSKQVS 240
Query: 416 QVPPRPGLM 424
Q+ PG +
Sbjct: 241 QIRTTPGWL 249
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 120/198 (60%), Gaps = 16/198 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
N++VK+ + +++ L+EMF+ +G I S +V +DGK +G GFV FE ESA A++
Sbjct: 7 TNVYVKDFGDELNDETLKEMFEKYGTITSHRVMI-KDGKGRGFGFVAFENPESAEHAVQE 65
Query: 160 LNGTTVGDKRI-YVGRFIKKSDRVLP----------SPAAKY--TNLFMKNLDSDVTEEH 206
LNG +G+ +I YVGR KK++R + +Y NL++KNLD + +E
Sbjct: 66 LNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDER 125
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNF-DNPDDARRALEAMNGSVIGSKVLYAAR 265
L ++FS FG I S + +E G S+GFGFV F + ++A +A+ MNG ++GSK LY A
Sbjct: 126 LRKEFSPFGTITSAKVMLEE-GRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVAL 184
Query: 266 AQKKAEREQILRHQFEEK 283
AQ+ +R+ L Q+ ++
Sbjct: 185 AQRTEDRKAHLASQYMQR 202
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 96/189 (50%), Gaps = 23/189 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++YV D ++ D L + F ++ ++ S RV GR +G+V F +P A A++
Sbjct: 7 TNVYVKDFGDELNDETLKEMFEKYGTITSHRVMIKDGKGRG--FGFVAFENPESAEHAVQ 64
Query: 72 VKNHTQL-HGKMLRISWSCRDPD-----------------ARKSGVANLFVKNLIESIDN 113
N +L GK+L + + + + R GV NL+VKNL +SID+
Sbjct: 65 ELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGV-NLYVKNLDDSIDD 123
Query: 114 VRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQF-ETEESANAAIENLNGTTVGDKRIYV 172
RL++ F FG I S KV E+G+SKG GFV F + E A A+ +NG VG K +YV
Sbjct: 124 ERLRKEFSPFGTITSAKVML-EEGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYV 182
Query: 173 GRFIKKSDR 181
+ DR
Sbjct: 183 ALAQRTEDR 191
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 190/380 (50%), Gaps = 43/380 (11%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL PDV + LF+ FS + SVRVC+D T RS Y YVNF +P DA RAI+V
Sbjct: 177 SLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAIDV 236
Query: 73 KNHTQ---LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
+ K +RI W DP R++ N+F+KNL +SIDN L + F FG ++SC
Sbjct: 237 LQFYEGPLTKNKPIRIMWKRSDPSQRRNPEGNIFIKNLDKSIDNKALYDTFSTFGKVLSC 296
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR-VLPSPAA 188
K+AT + G S G+ FV ++ A I +NG + +++YVG F + +R +
Sbjct: 297 KLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYVGEFRPRREREATGELST 356
Query: 189 KYTNLFMKNLDSDV-TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP--DDAR 245
K+TN+++KNLD + T E + + F+ +G I S+ I + V P +D
Sbjct: 357 KFTNVYVKNLDESLCTTEEVTKLFAPYGNITSIFIPTET---------VQEQQPHHEDEH 407
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
RA + A +A R+ + + ++ ++ +D
Sbjct: 408 RA--------------PSEEASSEAGRQGGSSQEVKSAGADQ--SNAAPDLETSERNDGA 451
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
E +AH + V+R +GF FV F +PE+A+ AV +G L+ K LY
Sbjct: 452 KAPENRAH--------AQSVVRVRP---RGFAFVNFETPEQAAAAVEALNGMELNGKTLY 500
Query: 366 VAIAQRKEDRQAHLQLQYAQ 385
V AQ+K +R+A L+ Q Q
Sbjct: 501 VGRAQKKAEREAMLRAQMEQ 520
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 138/417 (33%), Positives = 210/417 (50%), Gaps = 44/417 (10%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+++ +L + + L+D FS F + S ++ D G S Y +V++ + A I
Sbjct: 269 IFIKNLDKSIDNKALYDTFSTFGKVLSCKLATDDK-GNSLGYAFVHYQDANVAKYVISKM 327
Query: 74 NHTQLHGKMLRISWSCRDPDARKSG-----VANLFVKNLIESIDNVR-LQEMFQNFGNII 127
N L+G+ + + + +G N++VKNL ES+ + ++F +GNI
Sbjct: 328 NGMLLNGQKVYVGEFRPRREREATGELSTKFTNVYVKNLDESLCTTEEVTKLFAPYGNIT 387
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
S F+ ET + E+ + + GR S V S
Sbjct: 388 SI--------------FIPTETVQEQQPHHEDEHRAPSEEASSEAGRQGGSSQEV-KSAG 432
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA-SLLIARDENGTSRGFGFVNFDNPDDARR 246
A +N D + +E + K + A S++ R RGF FVNF+ P+ A
Sbjct: 433 ADQSN---AAPDLETSERNDGAKAPENRAHAQSVVRVRP-----RGFAFVNFETPEQAAA 484
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
A+EA+NG + K LY RAQKKAERE +LR Q E+ R +R+ K + N++VKN+ DDV
Sbjct: 485 AVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQKLQDVNLFVKNLSDDVD 544
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ L+ FS+ GTITS ++MRDEKG++KGFGFV FS P+EA KAV + ++ +KP+YV
Sbjct: 545 ENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIKAVTEMNQRIVGQKPIYV 604
Query: 367 AIAQRKEDRQAHLQLQYAQHM--------AGIEGS-----SANVIPSGYPSLYYTTP 410
A+AQRK+ R+A ++ Q A M G+ S + PSGYP Y P
Sbjct: 605 ALAQRKDQRRAQIEAQRAAMMRAQMSFLPPGLAASMYVPGTGMPTPSGYPYPYAVHP 661
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 123/253 (48%), Gaps = 31/253 (12%)
Query: 83 LRISWSCRDPDARKSGVA-----NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-D 136
L S + P A SG +L+V +L + L E+F + G ++S +V
Sbjct: 154 LPASGATAVPAASASGTGELPNVSLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVT 213
Query: 137 GKSKGHGFVQFETEESANAAIENLN---GTTVGDKRIYVGRFIKKSDRVLPSPAAKYT-- 191
+S G+ +V F+ E A AI+ L G +K I + K+SD P+ +
Sbjct: 214 RRSLGYAYVNFQNPEDAERAIDVLQFYEGPLTKNKPIRI--MWKRSD-----PSQRRNPE 266
Query: 192 -NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
N+F+KNLD + + L + FS FGK+ S +A D+ G S G+ FV++ + + A+ +
Sbjct: 267 GNIFIKNLDKSIDNKALYDTFSTFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISK 326
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV-TDEE 309
MNG ++ + +Y + + ERE L K +NVYVKN+D+ + T EE
Sbjct: 327 MNGMLLNGQKVYVGEFRPRREREATGE-----------LSTKFTNVYVKNLDESLCTTEE 375
Query: 310 LKAHFSQCGTITS 322
+ F+ G ITS
Sbjct: 376 VTKLFAPYGNITS 388
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 61/85 (71%), Gaps = 5/85 (5%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKH-----KPDLVAKITGMLLEMDNSELLLLLESPESL 593
MLA P+QQKQILGERLYPLV + K +L KITGMLLEMDNSE+L L+ESPE+L
Sbjct: 898 MLANADPKQQKQILGERLYPLVYQQLVREGKRELAPKITGMLLEMDNSEVLHLVESPEAL 957
Query: 594 AVKVEEAVQVLKLSEAKVSTQEAIH 618
KVEEA++VL+ A + + A H
Sbjct: 958 QEKVEEALEVLQQHLASLQAKAAQH 982
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 147/227 (64%), Gaps = 3/227 (1%)
Query: 49 TGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLI 108
T S Y YV+F P D RA++ N + GK +RI WS DP KS V+N+F+KNL
Sbjct: 3 TCHSLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRIMWSQHDPSLHKSEVSNIFIKNLG 62
Query: 109 ESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDK 168
+SIDN L + F FGNI+SCKV E+G SKG+GFV FET+E+ AIE ++G + D
Sbjct: 63 KSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGMLLNDF 121
Query: 169 RIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE 226
+++VG+F + +R L + A ++TN+++KN D+ +EHL + F KFG + + DE
Sbjct: 122 KVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALRVKVMTDE 181
Query: 227 NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
+G S+GFGFV+F+ +DA++A+ MNG + K +Y RAQKK E++
Sbjct: 182 SGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQ 228
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 128/239 (53%), Gaps = 15/239 (6%)
Query: 139 SKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNL 198
S G+ +V F+ A++ +N + K + + + D L ++ +N+F+KNL
Sbjct: 6 SLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRI--MWSQHDPSLHK--SEVSNIFIKNL 61
Query: 199 DSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGS 258
+ + L + F FG I S + DENG S+G+GFV+F+ + RA+E M+G ++
Sbjct: 62 GKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGMLLND 120
Query: 259 KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCG 318
++ + + + ERE L + +E +NVY+KN +D+ DE LK F + G
Sbjct: 121 FKVFVGQFKSRKEREAELGARAKE----------FTNVYIKNFGEDMDDEHLKDLFGKFG 170
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
KVM DE G +KGFGFV F E+A KAVN +G L+ K +Y+ AQ+K ++Q
Sbjct: 171 PALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQT 229
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 230 SRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERIL 289
S G+ +V+F P D RAL+ MN VI K + +Q +
Sbjct: 6 SLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRIMWSQHDPS----------------LH 49
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASK 349
K + SN+++KN+ + ++ L F G I S KV+ DE G +KG+GFV F + E +
Sbjct: 50 KSEVSNIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVER 108
Query: 350 AVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
A+ G +L+ ++V + +++R+A L
Sbjct: 109 AIEKMSGMLLNDFKVFVGQFKSRKEREAEL 138
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
A + A ++Y+ + D+ D L D F +F V+V D +G+S +G+V+F
Sbjct: 136 AELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALRVKVMTDE-SGKSKGFGFVSFE 194
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRI 85
DA +A+ N +L+GK + I
Sbjct: 195 RHEDAQKAVNEMNGKELNGKQIYI 218
>gi|449329878|gb|AGE96146.1| polyadenylate-binding protein 2 [Encephalitozoon cuniculi]
Length = 502
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 200/376 (53%), Gaps = 23/376 (6%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++YVG+L P D +LF FS + SV++ K + + + +V F + DA RAI
Sbjct: 15 TIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEP--VSSFAFVTFENEEDAERAIRE 72
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
H +LH + +R+ D R N+FVKNL E L + F FG I+SCKVA
Sbjct: 73 YKHYELHNRQIRV----MKKDERPPETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVA 128
Query: 133 TSEDGKSKGHGFVQFETEESANAAIEN---LNGTTVGDKRIYVGRF---IKKSDRVLPSP 186
T+ GKSKG+GFVQF+ +++A I+N L+G +G RI V + IKK +
Sbjct: 129 TTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGES--KKT 186
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
+A +TN F+KN D +E L+E ++GK+ SL +NG +GF F NF+N + A
Sbjct: 187 SATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALN 246
Query: 247 ALEAMNGSV-IGS------KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
A++ ++G+ G+ + Y + Q+K ER + LR FE+ + YK N+Y+
Sbjct: 247 AIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMSMQG-QSYK-KNLYIT 304
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
NI + EEL + F + G ITS V D K + ++C+S+PEEAS AV + L
Sbjct: 305 NIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEIYL 364
Query: 360 HRKPLYVAIAQRKEDR 375
L VA + K +R
Sbjct: 365 DGNRLQVAYFKNKLER 380
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 134/298 (44%), Gaps = 28/298 (9%)
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L +F N G ++S K+ + S FV FE EE A AI + +++I R
Sbjct: 30 LFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFENEEDAERAIREYKHYELHNRQI---RV 85
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF 235
+KK +R P N+F+KNL D T + L + FS FG+I S +A +G S+G+GF
Sbjct: 86 MKKDER--PPETG---NIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSKGYGF 140
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN 295
V F A++ ++ N S + +L R + +I + E K+ +N
Sbjct: 141 VQFKEKKAAKKVIK--NFSSLDGLLLGGNRIVVELYNPEIKKG--ESKKTSATF----TN 192
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
++KN D ++ EL + G +TS + G KGF F F + E A A+ H
Sbjct: 193 CFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLH 252
Query: 356 G---YMLHR----KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANV----IPSGY 402
G + R + Y+ QRKE+R L+ + Q + N+ IP G+
Sbjct: 253 GTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMSMQGQSYKKNLYITNIPEGF 310
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
NL++ N+ E L +F+ FGNI S V K + ++ + T E A+ A+E
Sbjct: 300 NLYITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERG 359
Query: 161 NGTTVGDKRIYVGRFIKKSDRV 182
N + R+ V F K +R+
Sbjct: 360 NEIYLDGNRLQVAYFKNKLERM 381
>gi|19074720|ref|NP_586226.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
gi|74697505|sp|Q8SR30.1|PABP_ENCCU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|19069362|emb|CAD25830.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
Length = 502
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 200/376 (53%), Gaps = 23/376 (6%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++YVG+L P D +LF FS + SV++ K + + + +V F + DA RAI
Sbjct: 15 TIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEP--VSSFAFVTFENEEDAERAIRE 72
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
H +LH + +R+ D R N+FVKNL E L + F FG I+SCKVA
Sbjct: 73 YKHYELHNRQIRV----MKKDERPPETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVA 128
Query: 133 TSEDGKSKGHGFVQFETEESANAAIEN---LNGTTVGDKRIYVGRF---IKKSDRVLPSP 186
T+ GKSKG+GFVQF+ +++A I+N L+G +G RI V + IKK +
Sbjct: 129 TTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGES--KKT 186
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
+A +TN F+KN D +E L+E ++GK+ SL +NG +GF F NF+N + A
Sbjct: 187 SATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALN 246
Query: 247 ALEAMNGSV-IGS------KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
A++ ++G+ G+ + Y + Q+K ER + LR FE+ + YK N+Y+
Sbjct: 247 AIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMSMQG-QSYK-KNLYIT 304
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
NI + EEL + F + G ITS V D K + ++C+S+PEEAS AV + L
Sbjct: 305 NIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEIYL 364
Query: 360 HRKPLYVAIAQRKEDR 375
L VA + K +R
Sbjct: 365 DGNRLQVAYFKNKLER 380
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 134/298 (44%), Gaps = 28/298 (9%)
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L +F N G ++S K+ + S FV FE EE A AI + +++I R
Sbjct: 30 LFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFENEEDAERAIREYKHYELHNRQI---RV 85
Query: 176 IKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF 235
+KK +R P N+F+KNL D T + L + FS FG+I S +A +G S+G+GF
Sbjct: 86 MKKDER--PPETG---NIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSKGYGF 140
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN 295
V F A++ ++ N S + +L R + +I + E K+ +N
Sbjct: 141 VQFKEKKAAKKVIK--NFSSLDGLLLGGNRIVVELYNPEIKKG--ESKKTSATF----TN 192
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
++KN D ++ EL + G +TS + G KGF F F + E A A+ H
Sbjct: 193 CFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLH 252
Query: 356 G---YMLHR----KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANV----IPSGY 402
G + R + Y+ QRKE+R L+ + Q + N+ IP G+
Sbjct: 253 GTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMSMQGQSYKKNLYITNIPEGF 310
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
NL++ N+ E L +F+ FGNI S V K + ++ + T E A+ A+E
Sbjct: 300 NLYITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERG 359
Query: 161 NGTTVGDKRIYVGRFIKKSDRV 182
N + R+ V F K +R+
Sbjct: 360 NEIYLDGNRLQVAYFKNKLERM 381
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 97/196 (49%), Positives = 133/196 (67%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL SID+ L + F FGNI+SCKV
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 122 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 180
Query: 190 YTNLFMKNLDSDVTEE 205
+TN+++KN +V +E
Sbjct: 181 FTNVYIKNFGEEVDDE 196
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 18/190 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
+L++ +L SDVTE L EKFS G + S+ + RD S G+ +VNF P DA RAL+
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MN VI K + +Q R+ LR K NV++KN+D+ + D+
Sbjct: 62 TMNFDVIKGKPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDNSIDDKA 105
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S KV+ DE G +KG+ FV F + E A KA+ +G +L+ + ++V
Sbjct: 106 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 164
Query: 370 QRKEDRQAHL 379
+ +++R+A L
Sbjct: 165 KSRKEREAEL 174
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 109/211 (51%), Gaps = 16/211 (7%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G ++S +V +S G+ +V F+ A A+
Sbjct: 1 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I I S R + N+F+KNLD+ + ++ L + FS FG I
Sbjct: 61 DTMNFDVIKGKPIR----IMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + DENG S+G+ FV+F+ + A +A+E MNG ++ + ++ R + + ERE L
Sbjct: 117 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 175
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ +E +NVY+KN ++V DE
Sbjct: 176 AKAKE----------FTNVYIKNFGEEVDDE 196
>gi|123407356|ref|XP_001302991.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884332|gb|EAX90061.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 477
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 202/377 (53%), Gaps = 20/377 (5%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL V + + + F ++ S S V + +V F S A RAI
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 74 NHTQLHGKMLRISWSCRDPDAR---KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N+T+L G +RI WS DP + K+ V LF++ L E+I+ +L + F NFG I+SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSCK 125
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY 190
+ + +GKS+G+GF+ F E+ A A +L ++ K I + F +K R +P +
Sbjct: 126 IPLT-NGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQI-EFYQKPTR--KNPEETF 181
Query: 191 TNLFMKNLDSDV--TEEHLVEKFSKFGKI-----ASLLIARDENGTSRGFGFVNFDNPDD 243
TN+F+K L +D+ T++ L F +FG A+ I R E+G+S FGF NF + +D
Sbjct: 182 TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFCNFKHHED 241
Query: 244 ARRALEAMNGSV--IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
A +A++A+NG G RAQ KAER+ L Q E R+ + +G N+YVKN
Sbjct: 242 AVKAVDALNGKQHESGKVTFSCCRAQTKAERQAFLAKQSAEFRRRLNEETRGRNLYVKNF 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRD--EKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
D VTDE+ K +F Q G + + R+ E +KGFGFV F + E A A+ L
Sbjct: 302 DQSVTDEQFKEYFEQFGEVEKCSIRREAQEPHESKGFGFVLFKTKESAQNALENAVITPL 361
Query: 360 HRKPLYVAIAQRKEDRQ 376
+ K Y+ + + KE+R+
Sbjct: 362 NGKTPYIGLFKMKEERE 378
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 133/290 (45%), Gaps = 32/290 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L++ L ++ +L DAFS F + S ++ T G+S YG++ F DA RA
Sbjct: 95 GALFIRGLDENIEVSQLHDAFSNFGEIVSCKI--PLTNGKSRGYGFITFYKEDDAKRAKT 152
Query: 72 VKNHTQLHGKMLRISW----SCRDPDARKSGVANLFVKNLIESI--DNVRLQEMFQNFGN 125
++GK ++I + + ++P+ N+F+K L I + L F+ FG+
Sbjct: 153 DLADASINGKPIQIEFYQKPTRKNPE---ETFTNVFIKPLPADIFKTDDDLANFFKEFGD 209
Query: 126 IISC-----KVATSEDGKSKGHGFVQFETEESANAAIENLNGTT--VGDKRIYVGRFIKK 178
+ + EDG S GF F+ E A A++ LNG G R K
Sbjct: 210 FVVTGKANPAIKRKEDGSSCEFGFCNFKHHEDAVKAVDALNGKQHESGKVTFSCCRAQTK 269
Query: 179 SDR--VLPSPAAKYT----------NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD- 225
++R L +A++ NL++KN D VT+E E F +FG++ I R+
Sbjct: 270 AERQAFLAKQSAEFRRRLNEETRGRNLYVKNFDQSVTDEQFKEYFEQFGEVEKCSIRREA 329
Query: 226 -ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
E S+GFGFV F + A+ ALE + + K Y + K ERE+
Sbjct: 330 QEPHESKGFGFVLFKTKESAQNALENAVITPLNGKTPYIGLFKMKEERER 379
>gi|123408784|ref|XP_001303266.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884631|gb|EAX90336.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 461
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 143/430 (33%), Positives = 223/430 (51%), Gaps = 18/430 (4%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLA--SVRVCKDSTTGRSTCYGYVNFLSPHD 65
AT ++VGDL D+ + L F+E + S V K T S+ + +V F +
Sbjct: 2 ATLTTQIFVGDLPKDIDESFLKQFFAESGEIIPNSGIVLKKHKTLDSS-FAFVTFATHEQ 60
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDAR-KSGVANLFVKNLIESIDNVRLQEMFQNFG 124
A +A++ N+T+L G+ +RI W + A KSG +LF+ L ESI+ +L + F NFG
Sbjct: 61 AAKAMKNLNYTKLDGRPIRILWCDTETKAIIKSGRGSLFINGLDESIEVSQLHDAFSNFG 120
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP 184
IISCK+ + DGKS+G+G++QF E+A A L ++ K I + + +KS R
Sbjct: 121 EIISCKIPLT-DGKSRGYGYIQFRNPENAEKAKLELADASINGKPIKIDNYNRKSRR--- 176
Query: 185 SPAAKYTNLFMKNL--DSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+P +TN+++K L D T+E L + F FG+I + + +DENG S+GFGF NF +
Sbjct: 177 NPDEDFTNVYIKPLPVDQVKTDEDLRKIFEPFGEIQNPSLKKDENGNSKGFGFCNFKLHE 236
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
DA +A+E +NG + L R K E+E + EK ++ + G N+YVK+
Sbjct: 237 DAVKAVEGLNGQEMFGVTLQVNRLMSKREKELYNIKKHTEKVEKFAEETNGRNLYVKSFS 296
Query: 303 DDVTDEELKAHFSQCGTITSAKVMR-DEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DVTD+E + +FS+ G I K+ R E +KGFGFV + S E+A A+ LH
Sbjct: 297 KDVTDKEFQEYFSKFGEIELFKIERVPETKESKGFGFVLYKSKEDAQNAIEMAMLERLHG 356
Query: 362 KPLYVAIAQRK------EDRQAHLQLQYAQHMAG-IEGSSANVIPSGYPSLYYTTPPGIV 414
YV Q K + + H + +AG + +S I Y + +P G +
Sbjct: 357 DLPYVGFFQTKAAHERVKVKNTHPRPSAVPAIAGNLMENSMTTIARQYQPVEDNSPKGQL 416
Query: 415 SQVPPRPGLM 424
Q+ G++
Sbjct: 417 KQLLQEKGVL 426
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 122/178 (68%), Gaps = 2/178 (1%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 106/196 (54%), Gaps = 18/196 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P+ +L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN VI K + +Q R+ LR K N+++KN+D
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQ----RDPSLR------------KSGVGNIFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L FS G I S KV+ DE G +KG+GFV F + E A +A+ +G +L+ +
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Query: 364 LYVAIAQRKEDRQAHL 379
++V + +++R+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 6/187 (3%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQIL 276
ERE L
Sbjct: 177 KEREAEL 183
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 122/178 (68%), Gaps = 2/178 (1%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 8 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 67
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 68 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 127
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R
Sbjct: 128 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 184
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 22/219 (10%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P+ +L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF P D
Sbjct: 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 69
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN VI K + +Q R+ LR K N+++KN+D
Sbjct: 70 AERALDTMNFDVIKGKPVRIMWSQ----RDPSLR------------KSGVGNIFIKNLDK 113
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L FS G I S KV+ DE G +KG+GFV F + E A +A+ +G +L+ +
Sbjct: 114 SIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172
Query: 364 LYVAIAQRKEDRQAHLQLQ----YAQHMAGIEGSSANVI 398
++V + +++R+A L + Y + GSS ++
Sbjct: 173 VFVGRFKSRKEREAELGARAKEFYPYDVPDYAGSSGRIV 211
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 7 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 66
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 67 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 122
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 123 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181
Query: 270 AEREQILRHQFEEKRKERILKYKGSN 295
ERE L + +E + Y GS+
Sbjct: 182 KEREAELGARAKEFYPYDVPDYAGSS 207
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 141/213 (66%), Gaps = 3/213 (1%)
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SC
Sbjct: 1 LDTMNSDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 60
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPA 187
KV E+G SKG+GFV FET E+A AIE +NG + D++++VGRF + +R L + A
Sbjct: 61 KVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 119
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
++TN+++KN D+ +E L E F+KFG S+ + D++G S+GFGFV+F+ +DA++A
Sbjct: 120 KEFTNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKA 179
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
++ MNG I + +Y K ER+ L+ +F
Sbjct: 180 VDEMNGKEINGRQVYVGPCPXKVERQTELKRKF 212
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 113/192 (58%), Gaps = 11/192 (5%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+F+KNLD + + L + FS FG I S + DENG S+G+GFV+F+ + A RA+E M
Sbjct: 32 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 90
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG ++ + ++ R + + ERE L + +E +NVY+KN +D+ DE LK
Sbjct: 91 NGMLLNDRKVFVGRFKSRKEREAELGAKAKE----------FTNVYIKNFGEDMDDERLK 140
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F++ G S KVM D+ G +KGFGFV F E+A KAV+ +G ++ + +YV
Sbjct: 141 EIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYVGPCPX 200
Query: 372 KEDRQAHLQLQY 383
K +RQ L+ ++
Sbjct: 201 KVERQTELKRKF 212
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +L + + L+D FS F ++ S +V D S YG+V+F + A RAIE
Sbjct: 31 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIE 88
Query: 72 VKNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
N L+ + + + S R+ + A+ N+++KN E +D+ RL+E+F FG
Sbjct: 89 KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEDMDDERLKEIFNKFGA 148
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG 173
+S KV T + G+SKG GFV FE E A A++ +NG + +++YVG
Sbjct: 149 FLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYVG 196
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 142/227 (62%), Gaps = 20/227 (8%)
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
F S+ + DE+G S+GF FV+F+ +DA++A++ MNG + K +Y RAQKK E +
Sbjct: 10 FRPALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVEPQ 69
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+H+FE+ +++ I +Y+G N+YVKN+DD + DE L+ FS GTITSAKVM E G +
Sbjct: 70 TEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSAKVMM-EGGRS 128
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGS 393
KGFGFVCFSSPEEA+KAV +G + KPLYVA+AQ KE+ AHL QY Q MA +
Sbjct: 129 KGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTSQYMQRMASVRAV 188
Query: 394 SANVI-------PSGY----------PSLYYTTPPGIVSQVPPRPGL 423
VI PSGY + YY PP ++Q+ PRP +
Sbjct: 189 PNAVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPSQIAQLRPRPRI 233
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 106/188 (56%), Gaps = 22/188 (11%)
Query: 111 IDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
+D+ RL+++F+ +S KV T E GKSKG FV FE E A A++ +NG + K+I
Sbjct: 1 MDDERLKDLFRP---ALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 171 YVGRFIKKSDRVLPSPAAKY---------------TNLFMKNLDSDVTEEHLVEKFSKFG 215
YVGR KK V P K+ NL++KNLD + +EHL ++FS FG
Sbjct: 58 YVGRAQKK---VEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFG 114
Query: 216 KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI 275
I S + E G S+GFGFV F +P++A +A++ MNG + +K LY A AQ K E
Sbjct: 115 TITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAH 173
Query: 276 LRHQFEEK 283
L Q+ ++
Sbjct: 174 LTSQYMQR 181
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 20/156 (12%)
Query: 35 FKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR---- 90
F+ SV+V D + G+S + +V+F DA +A++ N +L+GK + + + +
Sbjct: 10 FRPALSVKVMTDES-GKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVEP 68
Query: 91 -------------DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDG 137
D R GV NL+VKNL + ID+ L++ F FG I S KV E G
Sbjct: 69 QTEPKHKFEQMKQDTITRYQGV-NLYVKNLDDGIDDEHLRKEFSPFGTITSAKVMM-EGG 126
Query: 138 KSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG 173
+SKG GFV F + E A A++ +NG TV K +YV
Sbjct: 127 RSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVA 162
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
+DNSELL +LESPESL K +EAV VL+ +AK + Q+A++
Sbjct: 233 IDNSELLHMLESPESLCSKADEAVAVLQAHQAKEAAQKAVN 273
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 163/251 (64%), Gaps = 5/251 (1%)
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR- 181
FGNI+SCKV ++G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R
Sbjct: 3 FGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERA 61
Query: 182 --VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
V A +TN+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++
Sbjct: 62 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 121
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ A++A+ ++G I KVLY RAQKK ER LR +FE R + + G +Y+K
Sbjct: 122 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIK 181
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+D+ + DE+LK FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++
Sbjct: 182 NLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRVV 240
Query: 360 HRKPLYVAIAQ 370
KPL+V + Q
Sbjct: 241 GSKPLHVTLGQ 251
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 138/258 (53%), Gaps = 26/258 (10%)
Query: 33 SEFKSLASVRV-CKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD 91
S F ++ S +V C D+ S Y YV+F S A RAI N +L+ + + + +
Sbjct: 1 SAFGNILSCKVVCDDNG---SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-RFKF 56
Query: 92 PDARKSGV--------ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHG 143
P+ R + V N+FVKN+ + ID+ +L+E+F +G S KV GKSKG G
Sbjct: 57 PEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFG 116
Query: 144 FVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN----------- 192
FV++ET E+A A+ +L+G ++ K +YVGR KK +R+
Sbjct: 117 FVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGV 176
Query: 193 -LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
+++KNLD + +E L E+FS FG I+ + E G +GFG V F + ++A +A++ M
Sbjct: 177 PIYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEM 235
Query: 252 NGSVIGSKVLYAARAQKK 269
NG V+GSK L+ Q +
Sbjct: 236 NGRVVGSKPLHVTLGQAR 253
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 94/166 (56%), Gaps = 10/166 (6%)
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
S FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++ +Y R + E
Sbjct: 1 SAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 272 REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG 331
R +R + + +NV+VKNI DD+ DE+LK F + G S KV+RD G
Sbjct: 60 RAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASG 110
Query: 332 INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
+KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 111 KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 156
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 211/433 (48%), Gaps = 85/433 (19%)
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE 281
+ +NG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + + ERE L + +
Sbjct: 84 LPNKKNG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 142
Query: 282 EKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFV-- 339
E +NVY+KN +D+ DE LK F + G S KVM DE G +KGFGFV
Sbjct: 143 E----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 192
Query: 340 ----------------------CFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
CFSSPEEA+KAV +G ++ KPLYVA+AQRKE+RQA
Sbjct: 193 ERHEDAQKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA 252
Query: 378 HLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPGIVSQVPPR 420
HL QY Q MA + VI PSGY + YY PP ++Q+ P
Sbjct: 253 HLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPSQIAQLRPS 310
Query: 421 PGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GNMLPQVGA- 476
P W A G RP FQ P + P R M + +P+V +
Sbjct: 311 P-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMST 355
Query: 477 -HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVSLGTFNSGG 527
S+Q+ ++ + VP + + LN V++ +
Sbjct: 356 QRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQ-PAVH 414
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLL 587
V ++P + MLA+ P++QKQ+LGE L+PL++ P L KITGMLLE+DN E L +L
Sbjct: 415 VQGQEP-LTASMLASAPPQEQKQMLGEGLFPLIQAMHPTLAGKITGMLLEIDNLE-LHML 472
Query: 588 ESPESLAVKVEEA 600
E PESL K + A
Sbjct: 473 EPPESLRSKSQGA 485
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 103/171 (60%), Gaps = 26/171 (15%)
Query: 139 SKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMK 196
SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A ++TN+++K
Sbjct: 91 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 150
Query: 197 NLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD----------------- 239
N D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 151 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVMMEGGRSKG 210
Query: 240 -------NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
+P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 211 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 261
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 35/179 (19%)
Query: 52 STCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVK 105
S YG+V+F + A RAIE N L+ + + + S R+ + AR N+++K
Sbjct: 91 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 150
Query: 106 NLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFE----------------- 148
N E +D+ RL+++F FG +S KV T E GKSKG GFV FE
Sbjct: 151 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVMMEGGRSKG 210
Query: 149 -------TEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
+ E A A+ +NG V K +YV +K +R A TN +M+ + S
Sbjct: 211 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMAS 264
>gi|50545625|ref|XP_500351.1| YALI0B00616p [Yarrowia lipolytica]
gi|49646217|emb|CAG82565.1| YALI0B00616p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 191/395 (48%), Gaps = 42/395 (10%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
+P TT S+YV +L V++ +LF+ F L +++ +D + YV F +P
Sbjct: 11 MPQNTTTTMSIYVANLPGSVSEADLFELFKPHGPLKVIKIPRDPKLRTPLGHAYVTFYNP 70
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKS-------------GVANLFVKNLIES 110
A A+ T+L G+ + + + P + S +FV++ +
Sbjct: 71 DHADAALGALKETELGGQQVTCALTEEVPSSASSMSTPPSSAHSPIDPARAVFVRDTRDG 130
Query: 111 IDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIE----NLNGTTVG 166
+D + ++ G A S K F T E A+ + NL + V
Sbjct: 131 VDAATTKTALESLG-------AVSLQPKGPNAFVAVFPTAEEASKVLSDELANLEISPVR 183
Query: 167 DKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE 226
D P +TNLF++ L + TEE L +F +FG + SLL+ DE
Sbjct: 184 D------------------PKTHFTNLFVRGLSRETTEEALRAEFERFGAVTSLLLPLDE 225
Query: 227 NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKE 286
+ ++GFGFVNF+ DA A+ A++G+ + + +RAQ K ER+ L+ +E R E
Sbjct: 226 SHRAKGFGFVNFEEHRDAVTAVAALDGAELCGARISVSRAQSKVERQAELKRAYEANRIE 285
Query: 287 RILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEE 346
R+ +G+N+Y+ N++ + +E L+A+FS+ G ITS ++M D G +KGFGFVCF P+
Sbjct: 286 RLRNARGTNLYITNLNPAINNERLRAYFSKFGEITSVRIMLDAVGNSKGFGFVCFRDPDH 345
Query: 347 ASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQL 381
AS A+ H + L VAIA +K+ + A L
Sbjct: 346 ASNAIAEMHNRPIEGNVLQVAIAHKKDPQSAPYSL 380
>gi|344281908|ref|XP_003412718.1| PREDICTED: hypothetical protein LOC100663984 [Loxodonta africana]
Length = 640
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 7/203 (3%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
PPTA SLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P
Sbjct: 439 PPTA----SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPV 494
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
DA RA+E N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FG
Sbjct: 495 DAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFG 554
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP 184
NI+SCKVA E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R
Sbjct: 555 NILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 613
Query: 185 --SPAAKYTNLFMKNLDSDVTEE 205
+ A + T+ +K+ D D EE
Sbjct: 614 RGAWARQSTSADVKDFDEDTDEE 636
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 107/209 (51%), Gaps = 24/209 (11%)
Query: 170 IYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NG 228
IY R I S P P +L++ +L +VTE L EKFS G+I S+ I RD+
Sbjct: 427 IYTKRIISAS----PDPPT--ASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITR 480
Query: 229 TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
S G+ +VN+ P DA+RALE +N VI K +I+ Q R +
Sbjct: 481 RSLGYAYVNYQQPVDAKRALETLNFDVI------------KGRPVRIMWSQ----RDPSL 524
Query: 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEAS 348
K NV++KN+ + ++ L FS G I S KV DEKG KG+GFV F E A
Sbjct: 525 RKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKVACDEKG-PKGYGFVHFQEQESAE 583
Query: 349 KAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
+A++ +G L+ + ++V + ++R+A
Sbjct: 584 RAIDVMNGMFLNYRKIFVGRFKSHKEREA 612
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 19/213 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 441 TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 500
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 501 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNI 556
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G +G+GFV+F + A RA++ MNG + + ++ R + ERE
Sbjct: 557 LSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE---- 611
Query: 278 HQFEEKRKER-ILKYKGSNVYVKNIDDDVTDEE 309
ER + ++ VK+ D+D TDEE
Sbjct: 612 -------AERGAWARQSTSADVKDFDED-TDEE 636
>gi|429963232|gb|ELA42776.1| hypothetical protein VICG_00091 [Vittaforma corneae ATCC 50505]
Length = 528
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/394 (31%), Positives = 209/394 (53%), Gaps = 44/394 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFS-EFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
++ G+L P + EL FS E ++ +++ K+ S Y +V FLS DA R +
Sbjct: 51 VTVRCGNLSPKTSIAELVALFSREPVAIEDIKMKKNDLIQSS--YAFVTFLSIEDAKRIV 108
Query: 71 EVKNHTQLHGK---MLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
E N+T LH + ++ ++ P+ ANLFVKN+ + +L E+F++FG+I
Sbjct: 109 EKYNYTTLHDREMTLMILTSGNVFPEN-----ANLFVKNIPKEYTTKKLYEIFKDFGSIA 163
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL---- 183
SCKV+ +G+S+G+GFVQ+ET ESA+ AI +L K + + RF DR L
Sbjct: 164 SCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEKFEGKTLSISRF----DRSLRDQK 219
Query: 184 ----PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
S + +TN+F+KN S +TE L + K+G I S+ + +E GF VNF+
Sbjct: 220 HSDSSSSTSSFTNVFVKNFPSSLTEAKLKDILEKYGPICSIYLPLNEKSEPVGFACVNFE 279
Query: 240 NPDDARRALEAMNG-----------SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
+DA +A+E ++ S + + Y +A+++ ERE+ +R Q E
Sbjct: 280 KAEDAAKAVENLHNKHIFSLEECQDSSVATCPFYIQKAERRKEREETIRKQLEA------ 333
Query: 289 LKYKG----SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSP 344
L KG +N+Y+ +I + +++E++ FS+ GTI S K+ + NK FG++CF +P
Sbjct: 334 LSLKGINSKNNLYIAHIPETFSEDEIRDLFSKFGTIVSIKLQKTSSENNKQFGYICFKTP 393
Query: 345 EEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
EEA+ A G +L L ++ + K +R+A
Sbjct: 394 EEAAAAFEAMDGTLLDNSKLRISFYKAKNERRAE 427
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 90/208 (43%), Gaps = 36/208 (17%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V + +T+ +L D ++ + S+ + + + + VNF DA +A+E
Sbjct: 231 TNVFVKNFPSSLTEAKLKDILEKYGPICSIYLPLNEKS-EPVGFACVNFEKAEDAAKAVE 289
Query: 72 VKNHTQLHGKMLRISWSCRDPDA--------------------RKSGVA----------N 101
LH K + C+D RK A N
Sbjct: 290 -----NLHNKHIFSLEECQDSSVATCPFYIQKAERRKEREETIRKQLEALSLKGINSKNN 344
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L++ ++ E+ ++++F FG I+S K+ + +K G++ F+T E A AA E ++
Sbjct: 345 LYIAHIPETFSEDEIRDLFSKFGTIVSIKLQKTSSENNKQFGYICFKTPEEAAAAFEAMD 404
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
GT + + ++ + + K++R S + K
Sbjct: 405 GTLLDNSKLRISFYKAKNERRAESTSGK 432
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 22/178 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LY+ + ++ E+ D FS+F ++ S+++ K S+ +GY+ F +P +A A E
Sbjct: 344 NLYIAHIPETFSEDEIRDLFSKFGTIVSIKLQKTSSENNKQ-FGYICFKTPEEAAAAFEA 402
Query: 73 KNHTQLHGKMLRISWSCRDPDAR---------------KSGVANLFVKNLIESIDNV--R 115
+ T L LRIS+ + R K G++++ LI+S+ NV R
Sbjct: 403 MDGTLLDNSKLRISFYKAKNERRAESTSGKPRSSNSESKEGLSSIGTSKLIQSLANVVER 462
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETE----ESANAAIENLNGTTVGDKR 169
+++ N++ +T K F E E S++A +EN T + +K+
Sbjct: 463 TASLYKKDWNVVGANNSTEFSQKMAREFFSVHEKELKEMVSSSAFLENKIKTILKNKK 520
>gi|392355792|ref|XP_228576.4| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 456
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 116/170 (68%), Gaps = 1/170 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 258 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALE 317
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 318 TMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 377
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
A E G KG+GFV F+ +ESA AI+ LNG + ++I+VGRF +R
Sbjct: 378 ACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKER 426
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 18/187 (9%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L++ +L +VTE L EKFS G I S+ + RD+ S G+ +VN+ P DA+RALE
Sbjct: 259 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 318
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
MN VI + + +I+ Q R + K NV++KN+ + ++ L
Sbjct: 319 MNFDVINGRPV------------RIMWSQ----RDPSLRKSGVGNVFIKNLGKTIDNKAL 362
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V +
Sbjct: 363 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 421
Query: 371 RKEDRQA 377
++R+A
Sbjct: 422 SHKEREA 428
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 257 TASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRAL 316
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E +N + + + + + D L + N+F+KNL + + L FS FG I
Sbjct: 317 ETMNFDVINGRPVRI--MWSQRDPSLRK--SGVGNVFIKNLGKTIDNKALYNIFSAFGNI 372
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++A+NG + + ++ R + ERE
Sbjct: 373 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKERE 427
>gi|344281910|ref|XP_003412719.1| PREDICTED: hypothetical protein LOC100664266 [Loxodonta africana]
Length = 708
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 118/177 (66%), Gaps = 5/177 (2%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
PPTA SLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P
Sbjct: 348 PPTA----SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPV 403
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
DA RA+E N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FG
Sbjct: 404 DAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFG 463
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
NI+SCKVA E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R
Sbjct: 464 NILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKER 519
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 106/209 (50%), Gaps = 24/209 (11%)
Query: 170 IYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NG 228
IY R I S P +L++ +L +VTE L EKFS G+I S+ I RD+
Sbjct: 336 IYTKRIISAS------PDPPTASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITR 389
Query: 229 TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
S G+ +VN+ P DA+RALE +N VI K +I+ Q R +
Sbjct: 390 RSLGYAYVNYQQPVDAKRALETLNFDVI------------KGRPVRIMWSQ----RDPSL 433
Query: 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEAS 348
K NV++KN+ + ++ L FS G I S KV DEKG KG+GFV F E A
Sbjct: 434 RKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKVACDEKG-PKGYGFVHFQEQESAE 492
Query: 349 KAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
+A++ +G L+ + ++V + ++R++
Sbjct: 493 RAIDVMNGMFLNYRKIFVGRFKSHKERES 521
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 350 TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 409
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 410 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNI 465
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++ MNG + + ++ R + ERE
Sbjct: 466 LSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE 520
>gi|300120548|emb|CBK20102.2| unnamed protein product [Blastocystis hominis]
Length = 534
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 165/589 (28%), Positives = 256/589 (43%), Gaps = 78/589 (13%)
Query: 30 DAFSEFKSLASVR---VCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86
D EFK VR V D T +S CYGYV+F + +A +A+E N L GK +R+
Sbjct: 4 DLEEEFKKYGKVRATHVVLDKNTKQSRCYGYVDFSTAEEAEKALEGANFNILKGKEMRVM 63
Query: 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFV 145
+ NLFVKNL + + N L + F +GNI+SCKVA E GKS +G+V
Sbjct: 64 RQQLRFKQTCNPKGNLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYV 123
Query: 146 QFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEE 205
F + ++N V + +YV + K+ + ++ + ++ N + +TE+
Sbjct: 124 HFSDPNVTQKVLADMNKDVVEEGAMYVMEYEKR----MKDTSSDWVTCYVANFPTTLTED 179
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK-----V 260
L + F K+G I S+ I + GFV F N D A +A+E + VI + V
Sbjct: 180 GLRDLFGKYGTINSVYIGYKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMV 239
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
LY R Q + ER I + EEK+KE + + KG +YV D +T E L+ F G I
Sbjct: 240 LYVNRLQSREERASINQKILEEKKKEEVERTKGRFLYVGFGDQTITLERLREIFQAYGNI 299
Query: 321 TSAKVMRDEKGIN-KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
S + RD+ K FGFVC + E A A+ F H L V +AQ +E+R L
Sbjct: 300 ESCSIARDKNTKELKPFGFVCMDTTENAQNAIRAFRES--HDLKLKVELAQTREERAKML 357
Query: 380 QLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGF 439
+ + Q + YP + YT P+G+ G R
Sbjct: 358 KERRKQTQG---------VVMQYPVVQYT-----------------MPIGMNMGNR---- 387
Query: 440 VPPTRPAFQVSPLPVNPKHNRQNRGRM----NGNMLPQVGAHYMQQSSQSAASSKDSSNQ 495
+P + Q +P+ P Q G M +P + M Q S A+++ +
Sbjct: 388 MPSNKQQQQQQQIPMMPMM-YQTMGNMMSFPRNTQMPGMPVQMMNQGYMSMANTQFNEKY 446
Query: 496 QKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGER 555
K +M + M+ A + E+++ GER
Sbjct: 447 NK---------------------------LASLMQSMDPIKREMIDAMTNEERRNTFGER 479
Query: 556 LYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
++ L++ +KITGM+LE+ +L+ ++ P L K++EA VL
Sbjct: 480 IFYLIKTIGDPRCSKITGMMLELPVDDLMKIISDPGELLKKIDEANDVL 528
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 131/299 (43%), Gaps = 26/299 (8%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T +L+V +L +T+ EL D FS + ++ S +V D TG+S YGYV+F P+
Sbjct: 72 TCNPKGNLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYVHFSDPNVT 131
Query: 67 IRAIEVKNHTQL-HGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+ + N + G M + + R D V +V N ++ L+++F +G
Sbjct: 132 QKVLADMNKDVVEEGAMYVMEYEKRMKDTSSDWVT-CYVANFPTTLTEDGLRDLFGKYGT 190
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDK-----RIYVGRFIKKSD 180
I S + K GFV F +SA A+E L + + +YV R + +
Sbjct: 191 INSVYIGYKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMVLYVNRLQSREE 250
Query: 181 RVLPSPAAKYTN------------LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG 228
R + L++ D +T E L E F +G I S IARD+N
Sbjct: 251 RASINQKILEEKKKEEVERTKGRFLYVGFGDQTITLERLREIFQAYGNIESCSIARDKNT 310
Query: 229 TS-RGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKE 286
+ FGFV D ++A+ A+ A S L AQ + ER ++L+ E+RK+
Sbjct: 311 KELKPFGFVCMDTTENAQNAIRAFRES--HDLKLKVELAQTREERAKMLK----ERRKQ 363
>gi|293351002|ref|XP_001054954.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 438
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 116/170 (68%), Gaps = 1/170 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 240 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALE 299
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 300 TMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 359
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
A E G KG+GFV F+ +ESA AI+ LNG + ++I+VGRF +R
Sbjct: 360 ACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKER 408
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 18/188 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
+L++ +L +VTE L EKFS G I S+ + RD+ S G+ +VN+ P DA+RALE
Sbjct: 240 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALE 299
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MN VI + + +I+ Q R + K NV++KN+ + ++
Sbjct: 300 TMNFDVINGRPV------------RIMWSQ----RDPSLRKSGVGNVFIKNLGKTIDNKA 343
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V
Sbjct: 344 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRF 402
Query: 370 QRKEDRQA 377
+ ++R+A
Sbjct: 403 KSHKEREA 410
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 239 TASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRAL 298
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E +N + + + + + D L + N+F+KNL + + L FS FG I
Sbjct: 299 ETMNFDVINGRPVRI--MWSQRDPSLRK--SGVGNVFIKNLGKTIDNKALYNIFSAFGNI 354
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++A+NG + + ++ R + ERE
Sbjct: 355 LSCKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKERE 409
>gi|426396432|ref|XP_004064447.1| PREDICTED: uncharacterized protein LOC101125114 [Gorilla gorilla
gorilla]
Length = 533
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 335 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 394
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 395 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 454
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 455 ACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 513
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 514 STSADVKDFEEDTDEE 529
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P + +L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P D
Sbjct: 329 NPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVD 388
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A+RALE +N VI K +I+ Q R + K NV++KN+
Sbjct: 389 AKRALETLNFDVI------------KGRPVRIMWSQ----RDPSLRKSGVGNVFIKNLGK 432
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ +
Sbjct: 433 TIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRK 491
Query: 364 LYVAIAQRKEDRQAH 378
++V + ++R+A
Sbjct: 492 IFVGRFKSHKEREAE 506
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 17/212 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 334 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 393
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 394 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 449
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G +G+GFV+F + A RA++ MNG + + ++ R + ERE
Sbjct: 450 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREA--- 505
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+ + ++ VK+ ++D TDEE
Sbjct: 506 -------ERGAWARQSTSADVKDFEED-TDEE 529
>gi|441675859|ref|XP_003280927.2| PREDICTED: uncharacterized protein LOC100588478 [Nomascus
leucogenys]
Length = 485
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 287 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 346
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 347 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 406
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 407 ACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 465
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 466 STSADVKDFEEDTDEE 481
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 18/188 (9%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P DA+RALE
Sbjct: 288 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 347
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N VI + + +I+ Q R + K NV++KN+ + ++ L
Sbjct: 348 LNFDVIKGRPV------------RIMWSQ----RDPSLRKSGVGNVFIKNLGKTIDNKAL 391
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V +
Sbjct: 392 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 450
Query: 371 RKEDRQAH 378
++R+A
Sbjct: 451 SHKEREAE 458
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 19/213 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 286 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 345
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 346 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 401
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G +G+GFV+F + A RA++ MNG + + ++ R + ERE
Sbjct: 402 LSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE---- 456
Query: 278 HQFEEKRKER-ILKYKGSNVYVKNIDDDVTDEE 309
ER + ++ VK+ ++D TDEE
Sbjct: 457 -------AERGAWARQSTSADVKDFEED-TDEE 481
>gi|395754119|ref|XP_002831853.2| PREDICTED: uncharacterized protein LOC100437512 [Pongo abelii]
Length = 528
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 330 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 389
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 390 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 449
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 450 ACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 508
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 509 STSADVKDFEEDTDEE 524
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 99/188 (52%), Gaps = 18/188 (9%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P DA+RALE
Sbjct: 331 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 390
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N VI K +I+ Q R + K NV++KN+ + ++ L
Sbjct: 391 LNFDVI------------KGRPVRIMWSQ----RDPSLRKSGVGNVFIKNLGKTIDNKAL 434
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V +
Sbjct: 435 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 493
Query: 371 RKEDRQAH 378
++R+A
Sbjct: 494 SHKEREAE 501
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 19/213 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 329 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 388
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 389 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 444
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G +G+GFV+F + A RA++ MNG + + ++ R + ERE
Sbjct: 445 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREA--- 500
Query: 278 HQFEEKRKER-ILKYKGSNVYVKNIDDDVTDEE 309
ER + ++ VK+ ++D TDEE
Sbjct: 501 --------ERGAWARQSTSADVKDFEED-TDEE 524
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/167 (53%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P + P ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
GNI+SCKV E+G SKG+GFV FET+E+A AIE +NG + D+++
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 18/179 (10%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P+ +L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF P D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN VI K + +Q R+ LR K N+++KN+D
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQ----RDPSLR------------KSGVGNIFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ ++ L FS G I S KV+ DE G +KG+GFV F + E A +A+ +G +L+ +
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK 259
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G I S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQR 89
>gi|296470851|tpg|DAA12966.1| TPA: PABPC1L2B protein-like [Bos taurus]
Length = 489
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 291 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 350
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 351 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 410
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 411 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 469
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 470 STSADVKDFEEDTDEE 485
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 102/194 (52%), Gaps = 18/194 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P D
Sbjct: 285 NPNFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVD 344
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A+RALE +N VI + + +Q R+ LR K NV++KN+
Sbjct: 345 AKRALETLNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGK 388
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ +
Sbjct: 389 TIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRK 447
Query: 364 LYVAIAQRKEDRQA 377
++V + ++R+A
Sbjct: 448 IFVGRFKSHKEREA 461
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 290 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 349
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 350 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 405
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 406 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 460
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 286 ERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFS 342
ER + +++YV ++ +VT+ L FS G I S ++ RD+ I + G+ +V +
Sbjct: 283 ERNPNFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDK--ITRRSLGYAYVNYQ 340
Query: 343 SPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
P +A +A+ T + ++ +P+ + +QR
Sbjct: 341 QPVDAKRALETLNFDVIKGRPVRIMWSQR 369
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/187 (49%), Positives = 118/187 (63%), Gaps = 6/187 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
EDG+SKG GFV F + E A A+ +NG VG K +YV +K +R A T
Sbjct: 131 ML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER-----KAHLT 184
Query: 192 NLFMKNL 198
N +M+ +
Sbjct: 185 NQYMQRV 191
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 123/208 (59%), Gaps = 18/208 (8%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L++ +L SDVTE L EKFS G + S+ + RD S G+ +VNF P DA RAL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
MN VI K + +I+ Q R + K NV++KN+D + ++ L
Sbjct: 72 MNFDVIKGKPI------------RIMWSQ----RDPSLRKSGVGNVFIKNLDKSIDNKAL 115
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G I S KVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQ
Sbjct: 116 YDTFSAFGNILSCKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 174
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVI 398
RKE+R+AHL QY Q +AG+ AN I
Sbjct: 175 RKEERKAHLTNQYMQRVAGMRALPANAI 202
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>gi|291407697|ref|XP_002720156.1| PREDICTED: polyadenylate-binding protein 1-like [Oryctolagus
cuniculus]
gi|301792853|ref|XP_002931393.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Ailuropoda
melanoleuca]
gi|311276495|ref|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|335306198|ref|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|281338845|gb|EFB14429.1| hypothetical protein PANDA_022442 [Ailuropoda melanoleuca]
Length = 200
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
+L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P DA+RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N VI + + +Q R+ LR K NV++KN+ + ++
Sbjct: 62 TLNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGKTIDNKA 105
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 370 QRKEDRQAH 378
+ ++R+A
Sbjct: 165 KSHKEREAE 173
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 171
>gi|160331003|ref|XP_001712209.1| pab1 [Hemiselmis andersenii]
gi|159765656|gb|ABW97884.1| pab1 [Hemiselmis andersenii]
Length = 502
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 163/278 (58%), Gaps = 6/278 (2%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
LYVGDL ++ + ++ F L SV++ +D ++G Y +V F + DA RA+
Sbjct: 40 TCLYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERALT 99
Query: 72 VKNHTQLHGKM---LRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
N+ KM LR+ W +D KSG N+F+KNL D+ L++MF +FG I+S
Sbjct: 100 KLNYYFDPEKMKKPLRLMWYQKDKFLLKSGGGNIFIKNLPLFFDSKSLEKMFLDFGKILS 159
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV-LPSPA 187
CKVA E+G S G+GFV FE E+++ AIE NG +G+K+I+VG F+ + DR
Sbjct: 160 CKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDRKNFGMTK 219
Query: 188 AKYTNLFMKNLDSDVTEEHLVEK-FSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
+TN+++KN+ + E ++ F FGKI S+ I ++ N T +GF FVN++ P++A
Sbjct: 220 TGFTNIYIKNISPENCNETFIKDLFDIFGKITSIYIPKNNNFT-KGFAFVNYELPEEAED 278
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKR 284
A+ MN I + LY +A+ K ER++ L+ +F EK+
Sbjct: 279 AIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKFLEKK 316
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 145/296 (48%), Gaps = 27/296 (9%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
L+V +L ++ ++++F G + S K+ G+ G+ FV+FE + A A+ L
Sbjct: 42 LYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERALTKL 101
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEHLVEKFSKF 214
N +K +KK R++ K+ N+F+KNL + L + F F
Sbjct: 102 NYYFDPEK-------MKKPLRLMWYQKDKFLLKSGGGNIFIKNLPLFFDSKSLEKMFLDF 154
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
GKI S +A DENGTS G+GFV+F++ ++ A+E NG +IG K ++ + +R+
Sbjct: 155 GKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDRKN 214
Query: 275 ILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE-LKAHFSQCGTITSAKVMRDEKGIN 333
+ K +N+Y+KNI + +E +K F G ITS + ++
Sbjct: 215 F-----------GMTKTGFTNIYIKNISPENCNETFIKDLFDIFGKITSIYIPKNN-NFT 262
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAG 389
KGF FV + PEEA A+ + + LYV A+ K +RQ HLQ ++ + G
Sbjct: 263 KGFAFVNYELPEEAEDAIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKFLEKKIG 318
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 14/187 (7%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T L++ +L ++ EE + + F G + S+ I RD +G G+ FV F+N DA RAL
Sbjct: 40 TCLYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERALT 99
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N Y +K + +++ +Q + + +LK G N+++KN+ +
Sbjct: 100 KLN---------YYFDPEKMKKPLRLMWYQ----KDKFLLKSGGGNIFIKNLPLFFDSKS 146
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F G I S KV DE G + G+GFV F + + A+ +G ++ K ++V
Sbjct: 147 LEKMFLDFGKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPF 206
Query: 370 QRKEDRQ 376
++DR+
Sbjct: 207 LSRKDRK 213
>gi|402585898|gb|EJW79837.1| Poly(A) binding protein [Wuchereria bancrofti]
Length = 175
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/149 (56%), Positives = 105/149 (70%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ LF+ FS + S+RVC+D+ T RS Y YVNF P DA RA++
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++GK +RI WS RDP R+SG N+F+KNL +SIDN + + F FGNI+SCKV
Sbjct: 78 TMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKV 137
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENL 160
A E+ SKG+GFV FETEESA AIE +
Sbjct: 138 ANDEESNSKGYGFVHFETEESAQKAIEKV 166
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 17/168 (10%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P+ +L++ +L DVTE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 12 TPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPAD 71
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN ++ K + +I+ Q R + + N+++KN+D
Sbjct: 72 AERALDTMNFDMMYGKPI------------RIMWSQ----RDPSMRRSGAGNIFIKNLDK 115
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAV 351
+ ++ + FS G I S KV DE+ +KG+GFV F + E A KA+
Sbjct: 116 SIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAI 163
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 5/152 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F + G ++S +V +S G+ +V F+ A A+
Sbjct: 17 MASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERAL 76
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + K I I S R + N+F+KNLD + + + + FS FG I
Sbjct: 77 DTMNFDMMYGKPIR----IMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNI 132
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
S +A DE S+G+GFV+F+ + A++A+E
Sbjct: 133 LSCKVANDEESNSKGYGFVHFETEESAQKAIE 164
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 15 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRD--AITRRSLGYAYVNFQQPADA 72
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + M++ KP+ + +QR
Sbjct: 73 ERALDTMNFDMMYGKPIRIMWSQR 96
>gi|444516866|gb|ELV11302.1| Polyadenylate-binding protein 1-like 2 [Tupaia chinensis]
Length = 200
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 181 STSADVKDFEDDTDEE 196
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
+L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P DA+RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N VI + + +Q R+ LR K NV++KN+ + ++
Sbjct: 62 TLNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGKTIDNKA 105
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 370 QRKEDRQAH 378
+ ++R+A
Sbjct: 165 KSHKEREAE 173
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 19/213 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREA--- 172
Query: 278 HQFEEKRKER-ILKYKGSNVYVKNIDDDVTDEE 309
ER + ++ VK+ +DD TDEE
Sbjct: 173 --------ERGAWARQSTSADVKDFEDD-TDEE 196
>gi|359081870|ref|XP_003588203.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|395862938|ref|XP_003803673.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Otolemur
garnettii]
Length = 200
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
+L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P DA+RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N VI + + +Q R+ LR K NV++KN+ + ++
Sbjct: 62 TLNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGKTIDNKA 105
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 370 QRKEDRQAH 378
+ ++R+A
Sbjct: 165 KSHKEREAE 173
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 171
>gi|395863403|ref|XP_003803885.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Otolemur garnettii]
Length = 203
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 5 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 64
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 65 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 124
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 125 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 183
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 184 STSADVKDFEEDTDEE 199
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
+L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P DA+RALE
Sbjct: 5 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 64
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N VI + + +Q R+ LR K NV++KN+ + ++
Sbjct: 65 TLNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGKTIDNKA 108
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V
Sbjct: 109 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 167
Query: 370 QRKEDRQAH 378
+ ++R+A
Sbjct: 168 KSHKEREAE 176
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 4 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 63
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 64 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 119
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 120 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 174
>gi|397508069|ref|XP_003824497.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Pan paniscus]
Length = 293
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 95 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 154
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 155 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 214
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 215 ACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 273
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 274 STSADVKDFEEDTDEE 289
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 18/195 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P + +L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P D
Sbjct: 89 NPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVD 148
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A+RALE +N VI + + +Q R+ LR K NV++KN+
Sbjct: 149 AKRALETLNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGK 192
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ +
Sbjct: 193 TIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRK 251
Query: 364 LYVAIAQRKEDRQAH 378
++V + ++R+A
Sbjct: 252 IFVGRFKSHKEREAE 266
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 94 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 153
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 154 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 209
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++ MNG + + ++ R + ERE
Sbjct: 210 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE 264
>gi|426257244|ref|XP_004022242.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Ovis aries]
Length = 200
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
+L++ +L +VTE L EKFS G I S+ + RD+ S G+ +VN+ P DA+RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N VI + + +Q R+ LR K NV++KN+ + ++
Sbjct: 62 TLNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGKTIDNKA 105
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 370 QRKEDRQAH 378
+ ++R+A
Sbjct: 165 KSHKEREAE 173
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 171
>gi|61175237|ref|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|109948285|ref|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|402910552|ref|XP_003917938.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Papio anubis]
gi|426396426|ref|XP_004064444.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Gorilla gorilla
gorilla]
gi|74755614|sp|Q5JQF8.1|PAP1M_HUMAN RecName: Full=Polyadenylate-binding protein 1-like 2; AltName:
Full=RNA-binding motif protein 32; AltName:
Full=RNA-binding protein 32
gi|119619077|gb|EAW98671.1| hCG1811470 [Homo sapiens]
gi|187951483|gb|AAI36493.1| PABPC1L2A protein [Homo sapiens]
gi|261861056|dbj|BAI47050.1| poly(A) binding protein, cytoplasmic 1-like 2A [synthetic
construct]
gi|355704922|gb|EHH30847.1| RNA-binding protein 32 [Macaca mulatta]
gi|355767263|gb|EHH62597.1| RNA-binding protein 32 [Macaca fascicularis]
gi|380784435|gb|AFE64093.1| polyadenylate-binding protein 1-like 2 [Macaca mulatta]
Length = 200
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 18/188 (9%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P DA+RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N VI + + +Q R+ LR K NV++KN+ + ++ L
Sbjct: 63 LNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGKTIDNKAL 106
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
Query: 371 RKEDRQAH 378
++R+A
Sbjct: 166 SHKEREAE 173
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++ MNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE 171
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEASKA 350
+++YV ++ +VT+ L FS G I S ++ RD+ I + G+ +V + P +A +A
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDK--ITRRSLGYAYVNYQQPVDAKRA 59
Query: 351 VNTFHGYMLHRKPLYVAIAQR 371
+ T + ++ +P+ + +QR
Sbjct: 60 LETLNFDVIKGRPVRIMWSQR 80
>gi|348570494|ref|XP_003471032.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Cavia
porcellus]
Length = 200
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ K+ + D EE
Sbjct: 181 STSADCKDFEEDTDEE 196
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
+L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P DA+RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N VI + + +Q R+ LR K NV++KN+ + ++
Sbjct: 62 TLNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGKTIDNKA 105
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 370 QRKEDRQAH 378
+ ++R+A
Sbjct: 165 KSHKEREAE 173
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 171
>gi|119923699|ref|XP_599343.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|297493007|ref|XP_002700050.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|358420984|ref|XP_003584787.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|296470850|tpg|DAA12965.1| TPA: PABPC1L2B protein-like [Bos taurus]
gi|440892195|gb|ELR45496.1| Polyadenylate-binding protein 1-like 2 [Bos grunniens mutus]
Length = 200
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
+L++ +L +VTE L EKFS G I S+ + RD+ S G+ +VN+ P DA+RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N VI + + +Q R+ LR K NV++KN+ + ++
Sbjct: 62 TLNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGKTIDNKA 105
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 370 QRKEDRQAH 378
+ ++R+A
Sbjct: 165 KSHKEREAE 173
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 171
>gi|297304162|ref|XP_002806331.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Macaca mulatta]
Length = 249
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 51 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 110
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 111 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 170
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 171 ACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 229
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 230 STSADVKDFEEDTDEE 245
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P D
Sbjct: 45 NPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVD 104
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A+RALE +N VI + + +I+ Q R + K NV++KN+
Sbjct: 105 AKRALETLNFDVIKGRPV------------RIMWSQ----RDPSLRKSGVGNVFIKNLGK 148
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ +
Sbjct: 149 TIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRK 207
Query: 364 LYVAIAQRKEDRQAH 378
++V + ++R+A
Sbjct: 208 IFVGRFKSHKEREAE 222
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 50 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 109
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 110 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 165
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++ MNG + + ++ R + ERE
Sbjct: 166 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE 220
>gi|309271474|ref|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Mus
musculus]
Length = 229
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 116/170 (68%), Gaps = 1/170 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 31 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALE 90
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 91 TMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 150
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
A E G KG+GFV F+ +ESA AI+ LNG + ++I+VGRF +R
Sbjct: 151 ACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKER 199
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 102/194 (52%), Gaps = 18/194 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P D
Sbjct: 25 NPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVD 84
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A+RALE MN VI + + +Q R+ LR K NV++KN+
Sbjct: 85 AKRALETMNFDVINGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGK 128
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ +
Sbjct: 129 TIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRK 187
Query: 364 LYVAIAQRKEDRQA 377
++V + ++R+A
Sbjct: 188 IFVGRFKSHKEREA 201
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 30 TASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRAL 89
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E +N + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 90 ETMNFDVINGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 145
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++A+NG + + ++ R + ERE
Sbjct: 146 LSCKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKERE 200
>gi|351699464|gb|EHB02383.1| Polyadenylate-binding protein 1-like 2 [Heterocephalus glaber]
Length = 200
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 124/196 (63%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T K + D EE
Sbjct: 181 STGADCKGFEDDTDEE 196
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 18/188 (9%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P DA+RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N VI + + +Q R+ LR K NV++KN+ + ++ L
Sbjct: 63 LNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGKTIDNKAL 106
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V +
Sbjct: 107 YNIFSTFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 371 RKEDRQAH 378
++R+A
Sbjct: 166 SHKEREAE 173
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 171
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEASKA 350
+++YV ++ +VT+ L FS G I S ++ RD+ I + G+ +V + P +A +A
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDK--ITRRSLGYAYVNYQQPVDAKRA 59
Query: 351 VNTFHGYMLHRKPLYVAIAQR 371
+ T + ++ +P+ + +QR
Sbjct: 60 LETLNFDVIKGRPVRIMWSQR 80
>gi|431844457|gb|ELK01429.1| Polyadenylate-binding protein 1-like 2 [Pteropus alecto]
Length = 200
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
A E G KG+GFV F+ +ESA AI +NG + ++I+VGRF +R
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKER 170
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 18/200 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
+L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P DA+RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALE 61
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N VI K +I+ Q R + K NV++KN+ + ++
Sbjct: 62 TLNFDVI------------KGRPVRIMWSQ----RDPSLRKSGVGNVFIKNLGKSIDNKA 105
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S KV DEKG KG+GFV F E A +A+N +G L+ + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRF 164
Query: 370 QRKEDRQAHLQLQYAQHMAG 389
+ ++R+A Q +G
Sbjct: 165 KSHKEREAERGAWARQSTSG 184
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA+ AMNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKGP-KGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKERE 171
>gi|194228035|ref|XP_001914759.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Equus
caballus]
Length = 200
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ F + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 122 ACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 18/189 (9%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
+L++ +L +VTE L EKF G I S+ I RD+ S G+ +VN+ P DA+RALE
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N VI + + +Q R+ LR K NV++KN+ + ++
Sbjct: 62 TLNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGKTIDNKA 105
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ + ++V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 164
Query: 370 QRKEDRQAH 378
+ ++R+A
Sbjct: 165 KSHKEREAE 173
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F+ G I+S ++ + +S G+ +V ++ A A+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 61 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++AMNG + + ++ R + ERE
Sbjct: 117 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKERE 171
>gi|449486336|ref|XP_004177123.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Taeniopygia guttata]
Length = 167
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 10 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 70 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
E+G S+G+GFV FET E+A AIE +NG + D+++
Sbjct: 130 VCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKV 167
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 19/182 (10%)
Query: 183 LPS-PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDN 240
+PS P +L++ +L DVTE L EKFS G I S+ + RD S G+ ++NF
Sbjct: 1 MPSGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQ 60
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
P DA RAL+ MN VI + + +Q R+ LR K NV++KN
Sbjct: 61 PADAERALDTMNFEVIKGRPIRIMWSQ----RDPGLR------------KSGVGNVFIKN 104
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+DD + ++ L FS G I S KV+ DE G ++G+GFV F + E A++A+ T +G +L+
Sbjct: 105 LDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLN 163
Query: 361 RK 362
+
Sbjct: 164 DR 165
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 6/162 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S +V +S G+ ++ F+ A A+
Sbjct: 9 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERAL 68
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ +N + + I I S R + N+F+KNLD + + L + FS FG I
Sbjct: 69 DTMNFEVIKGRPIR----IMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNI 124
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK 259
S + DENG SRG+GFV+F+ + A RA+E MNG ++ +
Sbjct: 125 LSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDR 165
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 7 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAER 66
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ +P+ + +QR
Sbjct: 67 ALDTMNFEVIKGRPIRIMWSQR 88
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 1/195 (0%)
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYA 263
+E L + F KFG S+ + DE GTS+GFGFV+F +D ++A++ +NG + K +Y
Sbjct: 3 DERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQIYI 62
Query: 264 ARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSA 323
+RA K AE + LR +FE ++R +Y+G N+YVKN+DD + + L+ FS GTIT A
Sbjct: 63 SRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTITGA 122
Query: 324 KVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
K M E G ++GFGFV FSSPEEA+KAV +G ++ KPL VA+AQRKE+RQAHL QY
Sbjct: 123 KFMM-EGGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLTNQY 181
Query: 384 AQHMAGIEGSSANVI 398
Q MA + VI
Sbjct: 182 MQRMASVRAVPNPVI 196
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 106/187 (56%), Gaps = 17/187 (9%)
Query: 111 IDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
+D+ RL+++F FG +S KV E G SKG GFV F+ E A++ +NG + K+I
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 171 YVGRFIK----------KSDRVLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKI- 217
Y+ R K K + + A +Y NL++KNLD + E L ++FS FG I
Sbjct: 61 YISRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTIT 120
Query: 218 -ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQIL 276
A ++ E G S GFGFV F +P++A +A+ MNG ++ +K L A AQ+K ER+ L
Sbjct: 121 GAKFMM---EGGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHL 177
Query: 277 RHQFEEK 283
+Q+ ++
Sbjct: 178 TNQYMQR 184
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 91/193 (47%), Gaps = 25/193 (12%)
Query: 25 DGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84
D L D F +F SV+V D G S +G+V+F D +A++ N +L+ K +
Sbjct: 3 DERLKDLFGKFGPALSVKVMMDEG-GTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQIY 61
Query: 85 IS-------WS----CR------DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
IS W C+ D R GV NL+VKNL + ID LQ+ F FG I
Sbjct: 62 ISRAHKTAEWQTELRCKFEHMNQDRATRYQGV-NLYVKNLDDGIDEGCLQKEFSPFGTIT 120
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
K E G S+G GFV+F + E A A+ +NG V K + V +K +R
Sbjct: 121 GAKFMM-EGGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEER-----Q 174
Query: 188 AKYTNLFMKNLDS 200
A TN +M+ + S
Sbjct: 175 AHLTNQYMQRMAS 187
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 123/190 (64%), Gaps = 4/190 (2%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR- 68
+ ASLYVGDL P V++ L+D FS S++S+RVC+D+ T S Y YVNF + H+A R
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF-NDHEAGRK 94
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
AIE N+T + G++ RI WS RDP RK G N+F+KNL IDN L + F FG+I+S
Sbjct: 95 AIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILS 154
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSP 186
K+AT E+GKSKG GFV FE E +A AI+ LNG + + IYV + K+ D L
Sbjct: 155 SKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEET 214
Query: 187 AAKYTNLFMK 196
A YTNL++K
Sbjct: 215 KAHYTNLYVK 224
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 107/196 (54%), Gaps = 19/196 (9%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
L++ +L+ V+E HL + FS G ++S+ + RD TS G+ +VNF++ + R+A+E +
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS-NVYVKNIDDDVTDEEL 310
N + I ++ +Q+ L+ KGS N+++KN+ D+ ++ L
Sbjct: 100 NYTPIKGRLCRIMWSQRDPS-----------------LRKKGSGNIFIKNLHPDIDNKAL 142
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G I S+K+ DE G +KGFGFV F A +A++ +G +L+ + +YVA
Sbjct: 143 YDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHL 202
Query: 371 RKEDRQAHLQLQYAQH 386
+++R + L+ A +
Sbjct: 203 SRKERDSQLEETKAHY 218
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 21/204 (10%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFETEESANAAIE 158
A+L+V +L S+ L ++F G++ S +V K S G+ +V F E+ AIE
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 159 NLNGTTVGDKRIYVGRF--IKKSDRVLPSPAAKYT-NLFMKNLDSDVTEEHLVEKFSKFG 215
LN T + GR I S R PS K + N+F+KNL D+ + L + FS FG
Sbjct: 98 QLNYTPIK------GRLCRIMWSQRD-PSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG 150
Query: 216 KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI 275
I S IA DENG S+GFGFV+F+ A+ A++A+NG ++ + +Y A + ER+
Sbjct: 151 DILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDS- 209
Query: 276 LRHQFEEKRKERILKYKGSNVYVK 299
Q EE + +N+YVK
Sbjct: 210 ---QLEETKAHY------TNLYVK 224
>gi|7673357|gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 183/357 (51%), Gaps = 64/357 (17%)
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
++DE+LK FS GTITS KVMRD G++KG GFV FS+PEEAS+A++ +G M+ KPL
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 365 YVAIAQRKEDRQAHLQLQYAQH----MAGIEGSSANVIPSGYPSL----YYTTPPGIVSQ 416
YVA+AQRKE+R+A LQ Q++Q MA + P G P L +Y P +
Sbjct: 61 YVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQP--QPAM 118
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSP---LPVNPKHNRQNR-GRMNGNMLP 472
+PP+ G YQ VP RP P +P+ + + R G G +P
Sbjct: 119 LPPQAGFGYQ----------QQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGSRRGGAVP 168
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNS-GGVMAR 531
+QQ Q Q + P GR G G+ F GG M
Sbjct: 169 ------LQQGQQPVPLM----------QQQMFPRGRGYRYPPGRGLPDVAFPGVGGGMFS 212
Query: 532 KPDMLNGM-------------------LAAPSPEQQKQILGERLYPLVEKHKPDLVAKIT 572
P + GM LA SP +Q+ +LGE LYPLVE+ +P+ AK+T
Sbjct: 213 IPYDMGGMPVRDAGIVQPIPVGALATALANSSPTEQRTMLGENLYPLVEQLEPETAAKVT 272
Query: 573 GMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYLSAEVAVN 629
GMLLEMD +E+L LLESPE+L KV EA++VL+ VS Q++ +P A +++N
Sbjct: 273 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR----NVSQQQSSNPADQLASLSLN 325
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 202 VTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+++E L E FS +G I S + RD +G S+G GFV F NP++A RAL MNG ++ SK L
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 262 YAARAQKKAEREQILRHQFEEKR 284
Y A AQ+K ER L+ QF + R
Sbjct: 61 YVALAQRKEERRARLQAQFSQMR 83
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 111 IDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
I + +L+E+F +G I SCKV G SKG GFV F E A+ A+ +NG V K +
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 171 YVGRFIKKSDR 181
YV +K +R
Sbjct: 61 YVALAQRKEER 71
>gi|27469824|gb|AAH41956.1| PABPC1L2B protein [Homo sapiens]
Length = 243
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 126/196 (64%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+ +C+D T RS Y YVN+ P DA RA+E
Sbjct: 45 ASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRALE 104
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 105 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 164
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A E G KG+GFV F+ +ESA AI+ +NG + ++I+VGRF +R + A +
Sbjct: 165 ACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 223
Query: 190 YTNLFMKNLDSDVTEE 205
T+ +K+ + D EE
Sbjct: 224 STSADVKDFEEDTDEE 239
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 18/195 (9%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P + +L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P D
Sbjct: 39 NPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVD 98
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A+RALE +N VI + + +Q R+ LR K NV++KN+
Sbjct: 99 AKRALETLNFDVIKGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGK 142
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ ++ L FS G I S KV DEKG KG+GFV F E A +A++ +G L+ +
Sbjct: 143 TIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRK 201
Query: 364 LYVAIAQRKEDRQAH 378
++V + ++R+A
Sbjct: 202 IFVGRFKSHKEREAE 216
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 6/176 (3%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
+A+L+V +L + L E F G I+S + + +S G+ +V ++ A A+
Sbjct: 44 MASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRAL 103
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
E LN + + + I S R + N+F+KNL + + L FS FG I
Sbjct: 104 ETLNFDVIKGRPVR----IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 159
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
S +A DE G +G+GFV+F + A RA++ MNG + + ++ R + ERE
Sbjct: 160 LSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKERE 214
>gi|301606181|ref|XP_002932728.1| PREDICTED: polyadenylate-binding protein 1-B-like [Xenopus
(Silurana) tropicalis]
Length = 447
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 140/426 (32%), Positives = 204/426 (47%), Gaps = 47/426 (11%)
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
K +++KN ++ E+ F K G AS I ++ G FG + F+ DA RA+
Sbjct: 42 KTCPIYVKNFVKEIDEDDF---FGKCG--ASTKIINNDCGQQTEFGLLPFNKQKDAIRAV 96
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ M G I Y A+A+ K +R+ + E K R Y N+YVKN+ ++ D
Sbjct: 97 DKMKGMDI-----YLAQAKIKEKRQTEFSKKPEPLHKPR---YNSVNLYVKNLSYEIDDY 148
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
LK F+ GTITSAKVMR E G +KGFGFVCFS+P EA KA++ +G +L KPLYVA
Sbjct: 149 RLKKEFAPFGTITSAKVMR-EGGRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYVAW 207
Query: 369 AQRKEDRQAHLQLQYAQHM--AGIEGSSANVIPSGYPSLYYTTPPGI-------VSQVPP 419
AQRK++RQ L QY Q M A I + N + P + + ++P
Sbjct: 208 AQRKQERQVSLAQQYTQRMEKAWIPNTKVNPNQALLSRCSMAPIPAVQNHSEDSLCRIPK 267
Query: 420 RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYM 479
+ Q R A G P + FQ P R+ + ++P A +
Sbjct: 268 QTAQFKQ----RCYRNAQGTAPHS---FQYMPRAHPQISTRKYK------LIPTKTAVNL 314
Query: 480 QQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGM 539
+ SA S ++KY EL+ + + + + +
Sbjct: 315 VRGIMSATS-----------RNKYAAGDCNTELHSEKQTQAAMQHPAICVQGQEPLTISL 363
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
L + SP +QKQ+LG RL+PLV+ L KITG+LLE D SE++ +LESPE L +
Sbjct: 364 LVSASPHEQKQMLGVRLFPLVQIIDKKLAEKITGILLEFDTSEIIYMLESPELLRTMANK 423
Query: 600 AVQVLK 605
AV +L+
Sbjct: 424 AVTLLQ 429
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 10/192 (5%)
Query: 96 KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANA 155
K+ ++VKN ++ ID + F G S K+ ++ G+ G + F ++ A
Sbjct: 40 KTKTCPIYVKNFVKEIDE---DDFFGKCG--ASTKIINNDCGQQTEFGLLPFNKQKDAIR 94
Query: 156 AIENLNGTTV--GDKRIYVGRFIKKSDRVLPSPAAKY--TNLFMKNLDSDVTEEHLVEKF 211
A++ + G + +I R + S + P +Y NL++KNL ++ + L ++F
Sbjct: 95 AVDKMKGMDIYLAQAKIKEKRQTEFSKKPEPLHKPRYNSVNLYVKNLSYEIDDYRLKKEF 154
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
+ FG I S + R E G S+GFGFV F P +AR+AL MNG ++ SK LY A AQ+K E
Sbjct: 155 APFGTITSAKVMR-EGGRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYVAWAQRKQE 213
Query: 272 REQILRHQFEEK 283
R+ L Q+ ++
Sbjct: 214 RQVSLAQQYTQR 225
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 18/193 (9%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T T P +YV + ++ + + F K AS ++ ++ G+ T +G + F DA
Sbjct: 41 TKTCP--IYVKNFVKEIDEDDFFG-----KCGASTKII-NNDCGQQTEFGLLPFNKQKDA 92
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKS--------GVANLFVKNLIESIDNVRLQE 118
IRA++ ++ +I + ++K NL+VKNL ID+ RL++
Sbjct: 93 IRAVDKMKGMDIYLAQAKIKEKRQTEFSKKPEPLHKPRYNSVNLYVKNLSYEIDDYRLKK 152
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178
F FG I S KV E G+SKG GFV F T A A+ +NG + K +YV +K
Sbjct: 153 EFAPFGTITSAKV-MREGGRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYVAWAQRK 211
Query: 179 SDRVLPSPAAKYT 191
+R + S A +YT
Sbjct: 212 QERQV-SLAQQYT 223
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 121/188 (64%), Gaps = 20/188 (10%)
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE L
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 60
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQ
Sbjct: 61 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 119
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPGI 413
RKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 120 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPSQ 177
Query: 414 VSQVPPRP 421
++Q+ P P
Sbjct: 178 IAQLRPSP 185
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 13/136 (9%)
Query: 160 LNGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSDVTEEHL 207
+NG + K+IYVGR KK +R + +Y NL++KNLD + +E L
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 60
Query: 208 VEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267
++FS FG I S + E G S+GFGFV F +P++A +A+ MNG ++ +K LY A AQ
Sbjct: 61 RKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 119
Query: 268 KKAEREQILRHQFEEK 283
+K ER+ L +Q+ ++
Sbjct: 120 RKEERQAHLTNQYMQR 135
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
+V+ T+L K ++ +D R GV NL+VKNL + ID+ RL++ F FG I S K
Sbjct: 19 KVERQTELKRKFEQMK---QDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAK 74
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY 190
V E G+SKG GFV F + E A A+ +NG V K +YV +K +R A
Sbjct: 75 VMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHL 128
Query: 191 TNLFMKNLDS 200
TN +M+ + S
Sbjct: 129 TNQYMQRMAS 138
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYV +L + D L FS F ++ S +V + GRS +G+V F SP +A +A+
Sbjct: 45 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 102
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL 107
N + K L ++ + R + R++ + N +++ +
Sbjct: 103 MNGRIVATKPLYVALAQRK-EERQAHLTNQYMQRM 136
>gi|281340677|gb|EFB16261.1| hypothetical protein PANDA_006204 [Ailuropoda melanoleuca]
Length = 196
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 125/196 (63%), Gaps = 3/196 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD RKSG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 62 TMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
+ + G S+G+ FV F+ + +A+ AIE +NG + D R++VGRF + DR L + +
Sbjct: 122 MSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVNE 180
Query: 190 YTNLFMKNLDSDVTEE 205
+TN+++KN D+ +E
Sbjct: 181 FTNVYVKNFGDDMDDE 196
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 104/189 (55%), Gaps = 18/189 (9%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAM 251
L++ +L +DVTE+ L +KFS G + S+ I RD S G+ +VNF DA++AL+ M
Sbjct: 4 LYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDTM 63
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N +I K + +Q+ A RK I NV++KN+D + ++ L
Sbjct: 64 NFDMIKGKPIRLMWSQRDAYL-----------RKSGI-----GNVFIKNLDKSIDNKTLY 107
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
HFS G I S+KVM D++G ++G+ FV F + A +A+ +G +L L+V +
Sbjct: 108 EHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKN 166
Query: 372 KEDRQAHLQ 380
++DR+A LQ
Sbjct: 167 RKDREAELQ 175
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 28/216 (12%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIE 158
A+L+V +L + L + F G ++S ++ +S G+ +V F A A++
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 61
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEHLVEKFS 212
+N + K I R++ S Y N+F+KNLD + + L E FS
Sbjct: 62 TMNFDMIKGKPI----------RLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFS 111
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
FGKI S + D+ G SRG+ FV+F N + A RA+E MNG+++ L+ R + + +R
Sbjct: 112 AFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDR 170
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
E L+++ E +NVYVKN DD+ DE
Sbjct: 171 EAELQNKVNE----------FTNVYVKNFGDDMDDE 196
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD---EKGINKGFGFVCFSSPEEASKA 350
+++YV ++ DVT++ L FS G + S ++ RD + + G+ +V F +A KA
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSL--GYAYVNFLKLADAQKA 59
Query: 351 VNTFHGYMLHRKPLYVAIAQR 371
++T + M+ KP+ + +QR
Sbjct: 60 LDTMNFDMIKGKPIRLMWSQR 80
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 163/298 (54%), Gaps = 19/298 (6%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++++ +L + + L D F+ F ++ S +V D TGRS YG+V++ + A
Sbjct: 134 TGQGNIFIKNLDEAIDNKALHDTFAAFGTVLSCKVATDE-TGRSKGYGFVHYETAEAAEN 192
Query: 69 AIEVKNHTQLHGKML----RISWSCRDP--DARKSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + IS R + ++ NL+VKNL + E+F+
Sbjct: 193 AIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRAQFTNLYVKNLDPEVTQDEFIELFKK 252
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR- 181
+GN+ S ++ E+GKSKG GFV FET + A A++ LN + K+++V R KK++R
Sbjct: 253 YGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELNDFELKGKKLFVSRAQKKAERE 312
Query: 182 ---------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS 230
+KY NL++KNL+ DV ++ L +F FG I S + RDE G S
Sbjct: 313 EELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRDEKGQS 372
Query: 231 RGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
+GFGFV F +PD+A +A+ MN +IG+K LY + AQ++ R Q L Q ++ + R+
Sbjct: 373 KGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQRNQIRM 430
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 545 PEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
P +QKQ+LGE LY + +P+L KITGMLLEMDN+ELL LL++ E+L KV EA+ VL
Sbjct: 609 PMEQKQMLGEALYVRISPTQPELAGKITGMLLEMDNNELLHLLDNAEALNAKVTEALSVL 668
Query: 605 K 605
+
Sbjct: 669 Q 669
>gi|123445099|ref|XP_001311313.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121893117|gb|EAX98383.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 419
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 129/379 (34%), Positives = 194/379 (51%), Gaps = 23/379 (6%)
Query: 14 LYVGDLHPDVTDG----ELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
L+VGDL P DG ELF + F S ++ V K + +S + +V F S A RA
Sbjct: 8 LFVGDL-PGYVDGNFIKELFREYGNFPS-GTITVKKHKSLDKS--FAFVTFESHELARRA 63
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDAR---KSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+ N+T+L G +RI WS DP + K L + +L E I+ +L ++F NFG +
Sbjct: 64 LLEVNYTKLDGVPIRILWS--DPATKRAIKKDFCTLIIFDLDEYIEAAQLHDIFSNFGEV 121
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
+SCK+ + +GK +G G+V F EE A +L ++ K I + + K + + +
Sbjct: 122 VSCKIPLT-NGKPRGDGYVTFYKEEDAMRVKNDLAQASINGKPIQIVLYCKPTRK---NS 177
Query: 187 AAKYTNLFMKNLDSDV--TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+TN+F+K L T E L + FG+ + I +++GTS FGF NF DA
Sbjct: 178 EETFTNVFIKPLLVKYFKTNEDLAKLMKDFGEFVNPSIKFNDDGTSSEFGFCNFMYHQDA 237
Query: 245 RRALEAMNGS--VIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+A+E++NG + G RAQ KAER+ L Q E R+ + +G N+Y+KNID
Sbjct: 238 VKAVESLNGKMHISGEFEFVCCRAQTKAERQAFLAEQSAEFRRRLYEETRGRNLYIKNID 297
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRD--EKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+ DEE + +F Q G + + R+ E +KGFGFV F + E A A+ L
Sbjct: 298 RSINDEEFEEYFKQFGEVEKCLISREAQEPHESKGFGFVLFKTKEGAQNALKNTIITPLK 357
Query: 361 RKPLYVAIAQRKEDRQAHL 379
K LYV KE+R+ L
Sbjct: 358 GKILYVNYFIMKEEREHIL 376
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 136/285 (47%), Gaps = 23/285 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L + DL + +L D FS F + S ++ T G+ GYV F DA+R
Sbjct: 95 CTLIIFDLDEYIEAAQLHDIFSNFGEVVSCKI--PLTNGKPRGDGYVTFYKEEDAMRVKN 152
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKS--GVANLFVKNLIESI--DNVRLQEMFQNFGNII 127
++GK ++I C+ P + S N+F+K L+ N L ++ ++FG +
Sbjct: 153 DLAQASINGKPIQIVLYCK-PTRKNSEETFTNVFIKPLLVKYFKTNEDLAKLMKDFGEFV 211
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT--TVGDKRIYVGRFIKKSDR--VL 183
+ + ++DG S GF F + A A+E+LNG G+ R K++R L
Sbjct: 212 NPSIKFNDDGTSSEFGFCNFMYHQDAVKAVESLNGKMHISGEFEFVCCRAQTKAERQAFL 271
Query: 184 PSPAAKYT----------NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD--ENGTSR 231
+A++ NL++KN+D + +E E F +FG++ LI+R+ E S+
Sbjct: 272 AEQSAEFRRRLYEETRGRNLYIKNIDRSINDEEFEEYFKQFGEVEKCLISREAQEPHESK 331
Query: 232 GFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQIL 276
GFGFV F + A+ AL+ + + K+LY K ERE IL
Sbjct: 332 GFGFVLFKTKEGAQNALKNTIITPLKGKILYVNYFIMKEEREHIL 376
>gi|326430672|gb|EGD76242.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 765
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 137/256 (53%), Gaps = 8/256 (3%)
Query: 2 AVVPPTATTP----ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGY 57
V P P ASLYVGDL P V + ELF+ FS S+ SVRVC+D T S YGY
Sbjct: 65 GVAGPVPANPQGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGY 124
Query: 58 VNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ 117
VNF DA A+ N LHG+ +RI RDP R+SGV N+F+ L +V L+
Sbjct: 125 VNFNKAEDAEAAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLR 184
Query: 118 EMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV-GDKRIYVGRFI 176
+ F+ FG I+SCK G+ +G GFV FE + A AI NG GD+++ V F
Sbjct: 185 DTFEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFK 244
Query: 177 --KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS-LLIARDENGTSRGF 233
K+ ++ +TN+++K+L D EE L + F +G I S L T R +
Sbjct: 245 PRKQREQEQEERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTERPY 304
Query: 234 GFVNFDNPDDARRALE 249
GFVNF + + A++ +E
Sbjct: 305 GFVNFADTEAAQKCVE 320
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 185/378 (48%), Gaps = 35/378 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ L D T L D F +F + S + D + GR +G+V+F P A RAI
Sbjct: 167 GNIFISGLPADTTSVHLRDTFEQFGKILSCKAVLDHS-GRCRGFGFVHFEDPKVAERAIA 225
Query: 72 VKNHTQLHG-KMLRIS------WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
N G + LR++ ++ + R N++VK+L D L ++F+ +G
Sbjct: 226 EANGKDAGGDRKLRVAPFKPRKQREQEQEERTKNFTNVYVKSLRRDADEEELGKLFEPYG 285
Query: 125 NIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV-GRFIKKSDRV 182
+I S + T + + +GFV F E+A +E G YV G ++ +V
Sbjct: 286 DITSKALRTYKLKDTERPYGFVNFADTEAAQKCVEE--GEMHQRDIFYVDGMAFEEGKKV 343
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ + S+V HL GK++ ++ + E+G + D
Sbjct: 344 -----EDFVKTVEECAGSEVERHHLQ---VADGKLSGFILFK-EHGE---------ETVD 385
Query: 243 DARRAL-EAMNGSV--IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
A L E M + I LY RAQKK ER + LR + + + R L+ +G N++VK
Sbjct: 386 KAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRRR--LQERRRELRQRGGNLFVK 443
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N +++VT+E+L+ F +CG + S KVMRD++G+++ FGFV F++ EEA A+ + L
Sbjct: 444 NFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAKKNRQPL 503
Query: 360 HRKPLYVAIAQRKEDRQA 377
+P+YVA +++RQA
Sbjct: 504 QDRPIYVAFHLTRQERQA 521
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
LA EQ+++ LG+ LY V + KITGMLL D L+ LL S +L +V
Sbjct: 658 LAHMDEEQRRRYLGDMLYHRVANIDKERAPKITGMLLAYDAGHLMNLLASDAALREQVML 717
Query: 600 AVQVL 604
A +L
Sbjct: 718 AQNIL 722
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+L
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQ
Sbjct: 61 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVI 398
RKE+R+AHL QY Q +AG+ AN I
Sbjct: 120 RKEERKAHLTNQYMQRVAGMRALPANAI 147
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 13/136 (9%)
Query: 160 LNGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSDVTEEHL 207
+NG + K I+VGR KK +R + ++Y NL++KNLD + +E L
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 208 VEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267
++FS FG I S + E+G S+GFGFV F +P++A +A+ MNG ++GSK LY A AQ
Sbjct: 61 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 268 KKAEREQILRHQFEEK 283
+K ER+ L +Q+ ++
Sbjct: 120 RKEERKAHLTNQYMQR 135
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 7/105 (6%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153
+R GV NL++KNL ++ID+ +L++ F FG+I S KV EDG+SKG GFV F + E A
Sbjct: 39 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 96
Query: 154 NAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNL 198
A+ +NG VG K +YV +K +R A TN +M+ +
Sbjct: 97 TKAVTEMNGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRV 136
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LY+ +L + D +L FS F S+ S +V + GRS +G+V F SP +A +A+
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 102
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL 107
N + K L ++ + R + RK+ + N +++ +
Sbjct: 103 MNGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRV 136
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+L
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQ
Sbjct: 61 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVI 398
RKE+R+AHL QY Q +AG+ AN I
Sbjct: 120 RKEERKAHLTNQYMQRVAGMRALPANAI 147
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 13/136 (9%)
Query: 160 LNGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSDVTEEHL 207
+NG + K I+VGR KK +R + ++Y NL++KNLD + +E L
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 208 VEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267
++FS FG I S + E+G S+GFGFV F +P++A +A+ MNG ++GSK LY A AQ
Sbjct: 61 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 268 KKAEREQILRHQFEEK 283
+K ER+ L +Q+ ++
Sbjct: 120 RKEERKAHLTNQYMQR 135
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 7/105 (6%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153
+R GV NL++KNL ++ID+ +L++ F FG+I S KV EDG+SKG GFV F + E A
Sbjct: 39 SRYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEA 96
Query: 154 NAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNL 198
A+ +NG VG K +YV +K +R A TN +M+ +
Sbjct: 97 TKAVTEMNGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRV 136
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LY+ +L + D +L FS F S+ S +V + GRS +G+V F SP +A +A+
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 102
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL 107
N + K L ++ + R + RK+ + N +++ +
Sbjct: 103 MNGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRV 136
>gi|440493085|gb|ELQ75593.1| Polyadenylate-binding protein (RRM superfamily), partial
[Trachipleistophora hominis]
Length = 513
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 191/374 (51%), Gaps = 15/374 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCK---DSTTGRSTCYGYVNFLSPHDAIR 68
++YVGDL + +L+ FS S+ ++++ K D+ +TCY YV F +A+
Sbjct: 18 CTVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTCYAYVLFSQEEEALE 77
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKS-GVANLFVKNLIESIDNVRLQEMFQNFGNII 127
A+ N ++H K +R+ D + KS N+ +KNL D+ L + F FG I+
Sbjct: 78 AVNKLNFFKVHDKEMRVML--YDKERIKSMDRGNIVIKNLSADCDSKTLHDTFSIFGEIL 135
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
SCKVA + GK KG GFVQF+ + A A++ + I V ++ K + + + +
Sbjct: 136 SCKVAQNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMDGHAIKVEKYEK--NYKIKTGS 193
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
+TN+F KN S TE+ L E F GK++S A +G RGFGF N++N DA++A
Sbjct: 194 RAFTNVFFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKPDGGLRGFGFANYENAADAQKA 253
Query: 248 LEAMNGSVIGS----KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
++ ++G I + Y +AQ K +R L F EK L YK N+YV +
Sbjct: 254 IDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSLSSAF-EKLSMSGLNYK-RNLYVTRLPS 311
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
EE++ FSQ G I S V +D +K + +VCFS+ +EAS AV + +
Sbjct: 312 TYGKEEVEELFSQYGKIISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEVYIDSV 371
Query: 363 PLYVAIAQRKEDRQ 376
+ V + K +R+
Sbjct: 372 KINVTYFKSKNERE 385
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 131/280 (46%), Gaps = 18/280 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++ + +L D L D FS F + S +V ++S G+ +G+V F + + A +A++
Sbjct: 108 GNIVIKNLSADCDSKTLHDTFSIFGEILSCKVAQNSQ-GKCKGFGFVQFKNKNGARKALK 166
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVA--NLFVKNLIESIDNVRLQEMFQNFGNIISC 129
Q+ G +++ ++ + A N+F KN + +L+E+F + G + S
Sbjct: 167 FGTEMQMDGHAIKVEKYEKNYKIKTGSRAFTNVFFKNFPSTTTEQQLKEIFMSIGKVSSF 226
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKR----IYVGRFIKKSDRV--L 183
AT DG +G GF +E A AI+ L+G + + + YV + K R+ L
Sbjct: 227 YFATKPDGGLRGFGFANYENAADAQKAIDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSL 286
Query: 184 PSPAAKYT--------NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFG 234
S K + NL++ L S +E + E FS++GKI S+ + +D + +
Sbjct: 287 SSAFEKLSMSGLNYKRNLYVTRLPSTYGKEEVEELFSQYGKIISVCVGKDNVVNEDKNWA 346
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
+V F D+A A+E N I S + + K EREQ
Sbjct: 347 YVCFSTADEASIAVEKGNEVYIDSVKINVTYFKSKNEREQ 386
>gi|440293224|gb|ELP86367.1| polyadenylate-binding protein, putative [Entamoeba invadens IP1]
Length = 519
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/358 (31%), Positives = 186/358 (51%), Gaps = 24/358 (6%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFS-EFKS-LASVRVCKDSTTGRSTCYGYVNFLSP 63
P +++V L +VT+ L+ S +F+S +ASV V ++ T YVN +
Sbjct: 9 PNFDDNKTIFVSSLSKNVTESLLYKEISAKFESQVASVHVSRNE--HYDTAIAYVNMNTH 66
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
A +AIE N + GK + + WS +D R NLFVKN+ +++ +Q++F F
Sbjct: 67 EAAKKAIETMNGALIDGKTVNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTF 126
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN--GTTVGDKRIYVGRFIKKSDR 181
G IIS K++ +E+G S G G+V++ T E+A A+EN +G+ V +F K++
Sbjct: 127 GEIISVKLSVNENGASNGFGYVKYRTIEAALKAVENAAEIKAKIGEDNFIVAKFEKQTKN 186
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFG--------KIASLLIARDENGTSRGF 233
K TNL++ N+D V EE V+ F FG K L D++ T+
Sbjct: 187 -------KKTNLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFACDDKHPTA--M 237
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
GFV+F+N +DA++AL A +V+G + ++ER ++ + E + KYK
Sbjct: 238 GFVDFENEEDAQKALTAPKNNVLGQGEIKVDYYMSRSERSRVWLQKSLEIKSNIQGKYKD 297
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAV 351
N+Y+ + + +D E+++ F+ CG I S +V EK + FVCF+S E +KA+
Sbjct: 298 FNMYINTLKEPTSDAEIRSAFADCGEIYSVRVKYYEK-VPTSIAFVCFTSQEAFNKAM 354
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 125/288 (43%), Gaps = 27/288 (9%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T +L+V ++ V+ E+ D F F + SV++ + G S +GYV + + A++A
Sbjct: 101 TQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVNE-NGASNGFGYVKYRTIEAALKA 159
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDAR-KSGVANLFVKNLIESIDNVRLQEMFQNFG---- 124
+E N ++ K+ ++ + + K+ NL+V N+ +S++ + + F+ FG
Sbjct: 160 VE--NAAEIKAKIGEDNFIVAKFEKQTKNKKTNLYVSNIDKSVNEEQFVKYFETFGPLRK 217
Query: 125 ---NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
N A +D GFV FE EE A A+ +G I V ++ +S+R
Sbjct: 218 NPDNKFQVLFA-CDDKHPTAMGFVDFENEEDAQKALTAPKNNVLGQGEIKVDYYMSRSER 276
Query: 182 ----------VLPSPAAKYT--NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGT 229
+ + KY N+++ L ++ + F+ G+I S+ + E
Sbjct: 277 SRVWLQKSLEIKSNIQGKYKDFNMYINTLKEPTSDAEIRSAFADCGEIYSVRVKYYEK-V 335
Query: 230 SRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
FV F + + +A+ G +G KV Q+K Q+ +
Sbjct: 336 PTSIAFVCFTSQEAFNKAM--TKGEELGWKVCKFMNRQEKFMTNQMYQ 381
>gi|429966446|gb|ELA48443.1| hypothetical protein VCUG_00052 [Vavraia culicis 'floridensis']
Length = 511
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/349 (33%), Positives = 183/349 (52%), Gaps = 15/349 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCK---DSTTGRSTCYGYVNFLSPHDAIR 68
++YVGDL + +L+ FS S+ ++++ K D+ +TCY YV F +A+
Sbjct: 16 CTVYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTCYAYVLFSQEEEALE 75
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKS-GVANLFVKNLIESIDNVRLQEMFQNFGNII 127
A+ N ++H K +R+ D + KS N+ +KNL D+ L + F FG I+
Sbjct: 76 AVNKLNFFKVHDKEMRVML--YDKERIKSMDRGNIVIKNLSADCDSKTLHDTFSIFGEIL 133
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
SCKVA + GK KG GFVQF+ + A A++ + I V ++ K + + + +
Sbjct: 134 SCKVALNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMDGHAIKVEKYEK--NYKIKTGS 191
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
+TN+F KN TE+ + + F GK++S A +GT RGFGF N++N DA+RA
Sbjct: 192 RAFTNVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLRGFGFANYENATDAQRA 251
Query: 248 LEAMNG-SVIGSKV---LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
++ ++G V K Y +AQ K +R L F EK L YK N+YV + +
Sbjct: 252 IDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAF-EKLSMSGLNYK-RNLYVTRLPN 309
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAV 351
EE++ FSQ G + S V +D +K + +VCFS+ +EAS AV
Sbjct: 310 TYGKEEVQELFSQFGKVISVCVGKDNVVNEDKNWAYVCFSTADEASIAV 358
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 128/280 (45%), Gaps = 18/280 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++ + +L D L D FS F + S +V +S G+ +G+V F + + A +A++
Sbjct: 106 GNIVIKNLSADCDSKTLHDTFSIFGEILSCKVALNSQ-GKCKGFGFVQFKNKNGARKALK 164
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVA--NLFVKNLIESIDNVRLQEMFQNFGNIISC 129
Q+ G +++ ++ + A N+F KN + ++++F + G + S
Sbjct: 165 FGTEMQMDGHAIKVEKYEKNYKIKTGSRAFTNVFFKNFPLTTTEQEMKDIFMSIGKVSSF 224
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKR----IYVGRFIKKSDRV--L 183
A DG +G GF +E A AI+ L+G V + + YV + K R+ L
Sbjct: 225 YFAAKPDGTLRGFGFANYENATDAQRAIDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSL 284
Query: 184 PSPAAKYT--------NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFG 234
S K + NL++ L + +E + E FS+FGK+ S+ + +D + +
Sbjct: 285 SSAFEKLSMSGLNYKRNLYVTRLPNTYGKEEVQELFSQFGKVISVCVGKDNVVNEDKNWA 344
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
+V F D+A A+E N I S + + K EREQ
Sbjct: 345 YVCFSTADEASIAVEKGNEIYIDSVKINITYFKSKNEREQ 384
>gi|300707142|ref|XP_002995792.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
gi|239605007|gb|EEQ82121.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
Length = 508
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 209/423 (49%), Gaps = 42/423 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVGDL + +LF FS + +++ K S + +V F + A RAI+
Sbjct: 12 ATIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLSS--FAFVTFANGDAADRAIK 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ +L+ K +R+ C D +++ ANL VKNL S N L + F FG IIS K+
Sbjct: 70 EYNNFRLNKKNIRV-LPCMDEKSKRED-ANLIVKNLPSSFTNENLYDTFSVFGTIISAKI 127
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA--- 188
AT DGK K +GFVQF+ ++SA AI++ +G + +K I V F K+ R A
Sbjct: 128 ATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIFDKEKRRKQEEQALENK 187
Query: 189 ------KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI-ARDENGTSRGFGFVNFDNP 241
K+TN F+KN TE+ L +K+G I S+ +D S+GF F NF++
Sbjct: 188 PVKLEPKFTNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGFAFANFESH 247
Query: 242 DDARRALEAMNGSVI--------GSKV--LYAARAQKKAEREQILRHQFEEKRKERILKY 291
+ A+ A++ ++G I +K+ Y +AQKK ERE+ L+ FE+ L
Sbjct: 248 ESAQNAIQELHGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQ------LSL 301
Query: 292 KGSNV----YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEA 347
+G N+ Y+ NI + +++ FS+ G+I S + D + + +VC+S+ +EA
Sbjct: 302 EGQNIKRNLYITNIPAFIEKDDIFEIFSEFGSIVSFSIGIDAVNEQRKYAYVCYSTSDEA 361
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYY 407
A+ + + L V + K +R + M+ I +S +P Y S
Sbjct: 362 FIAIEKGNELFIDNNKLNVTYFKNKAERTKE------KMMSSININST--VPFIYSSPLK 413
Query: 408 TTP 410
TP
Sbjct: 414 ITP 416
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 155/332 (46%), Gaps = 37/332 (11%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
A ++V +L L +F + G ++ K+ + S FV F ++A+ AI+
Sbjct: 12 ATIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLS-SFAFVTFANGDAADRAIKE 70
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY----TNLFMKNLDSDVTEEHLVEKFSKFG 215
N + K I RVLP K NL +KNL S T E+L + FS FG
Sbjct: 71 YNNFRLNKKNI----------RVLPCMDEKSKREDANLIVKNLPSSFTNENLYDTFSVFG 120
Query: 216 KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI 275
I S IA +G + +GFV FD A+ A++ +G + +K++ K+ R+Q
Sbjct: 121 TIISAKIATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIFDKEKRRKQ- 179
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV-MRDEKGINK 334
Q E + + L+ K +N ++KN + T+++L++ ++ G ITS ++D ++K
Sbjct: 180 -EEQALENKPVK-LEPKFTNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSK 237
Query: 335 GFGFVCFSSPEEASKAVNTFHG----------YMLHRKPLYVAIAQRKEDRQAHLQLQYA 384
GF F F S E A A+ HG Y +P Y+ AQ+KE+R+ +L+ +
Sbjct: 238 GFAFANFESHESAQNAIQELHGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFE 297
Query: 385 QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQ 416
Q +EG + +LY T P + +
Sbjct: 298 Q--LSLEGQNIK------RNLYITNIPAFIEK 321
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+ +++ +L S E L FS G++ + + + S F FV F N D A RA++
Sbjct: 11 FATIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLS-SFAFVTFANGDAADRAIK 69
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
N R KK R +L E+ ++E +N+ VKN+ T+E
Sbjct: 70 EYNN----------FRLNKKNIR--VLPCMDEKSKRE------DANLIVKNLPSSFTNEN 111
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI- 368
L FS GTI SAK+ G K +GFV F + A A+ G L K + V I
Sbjct: 112 LYDTFSVFGTIISAKIATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIF 171
Query: 369 ---AQRKEDRQA 377
+RK++ QA
Sbjct: 172 DKEKRRKQEEQA 183
>gi|297830144|ref|XP_002882954.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
gi|297328794|gb|EFH59213.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
Length = 406
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 166/291 (57%), Gaps = 19/291 (6%)
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
L+G+ V K+++V +FI K +R S ++TN++++NL +VTE+ L FS++G ++S
Sbjct: 35 LHGSMVDGKKLFVAKFINKDERAAMSWNQEFTNVYVENLIENVTEDILHRLFSQYGIVSS 94
Query: 220 LLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQ 279
+++ RD G SRG GFVNF + ++A++A+E + G +GSK L+ +A +K ER ++L+
Sbjct: 95 VVVMRDGMGRSRGLGFVNFCHLENAKKAVEFLCGRQLGSKTLFVGKALRKDERMEMLKQH 154
Query: 280 FEEKRKERILK--YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
F R I K SN+YVKN+ + + D L+ F + G I SAKVMR E G +KGFG
Sbjct: 155 F---RDNSIAKPNMGWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVMRHENGRSKGFG 211
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANV 397
FVCFS+ EE+ +A + + KPL V + +RKED L QY H + A +
Sbjct: 212 FVCFSNREESKQAKRYLN---VDGKPLVVRVTERKEDTLKRLH-QYF-HGQPRHYTQAPL 266
Query: 398 IPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQ 448
+PS T P ++S VP G + QP + T + G P Q
Sbjct: 267 VPS-------PTQP-VLSYVPSSYGYL-QPFHVGTSYYFMGTQLPQMSGHQ 308
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 11/164 (6%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
N++V+NLIE++ L +F +G + S V G+S+G GFV F E+A A+E
Sbjct: 66 TNVYVENLIENVTEDILHRLFSQYGIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEF 125
Query: 160 LNGTTVGDKRIYVGRFIKKSDRV-----------LPSPAAKYTNLFMKNLDSDVTEEHLV 208
L G +G K ++VG+ ++K +R+ + P ++N+++KNL + + L
Sbjct: 126 LCGRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRLR 185
Query: 209 EKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
E F ++G+I S + R ENG S+GFGFV F N +++++A +N
Sbjct: 186 EIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN 229
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 16/165 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++YV +L +VT+ L FS++ ++SV V +D GRS G+VNF +A +A+E
Sbjct: 66 TNVYVENLIENVTEDILHRLFSQYGIVSSVVVMRDGM-GRSRGLGFVNFCHLENAKKAVE 124
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKS---------------GVANLFVKNLIESIDNVRL 116
QL K L + + R + + G +N++VKNL ES+++ RL
Sbjct: 125 FLCGRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRL 184
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+E+F +G I+S KV E+G+SKG GFV F E + A LN
Sbjct: 185 REIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN 229
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 171/339 (50%), Gaps = 12/339 (3%)
Query: 38 LASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKS 97
L S +V T + YGY+ F S +A R ++ N+ L+G+ LRI S D
Sbjct: 111 LKSAKVVLHKRTSKPLGYGYLQFNSKEEADRCLQDMNNYVLNGQALRIVHSVSKFDYNPK 170
Query: 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAI 157
ANL VKNL + + L + F+ FG+I S K+ T DG S+G+ F+QF++EE A A+
Sbjct: 171 --ANLLVKNLDKEVTQQELFDSFKQFGDIQSLKLETYPDGSSRGYAFIQFQSEEEAEKAL 228
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+N + K+I + R KK+ R P K+ NLF+KNL ++ L F KFG+I
Sbjct: 229 NAMNQAEIKGKKIEINRHEKKATRENPQ-QTKFNNLFVKNLPKGTDDDQLKGLFGKFGEI 287
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S+ + RDE G + +G+V F PD A A+ MN I + L + K + E
Sbjct: 288 ESVTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEMNKKQIDDQFLIVNQHISKKDNEPTQG 347
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS-QCGTITSAKVMRDEKGINK-- 334
+ + + K SN+Y+K I ++VT+EEL+ FS + I S K+ + K I
Sbjct: 348 SRL-NPITQNLNKTFNSNIYIKFIPNEVTEEELRKTFSMKDANIVSIKLTKFVKKIEDQE 406
Query: 335 ----GFGFVCFSSPEEASKAVNTF-HGYMLHRKPLYVAI 368
F ++ + + A KA+ TF + KPL V +
Sbjct: 407 VQPYQFAYILYDTVLGAQKAIQTFDQSTVFGNKPLLVEL 445
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 140/273 (51%), Gaps = 25/273 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+L V +L +VT ELFD+F +F + S+++ + G S Y ++ F S +A +A+
Sbjct: 171 ANLLVKNLDKEVTQQELFDSFKQFGDIQSLKL-ETYPDGSSRGYAFIQFQSEEEAEKALN 229
Query: 72 VKNHTQLHGKMLRISWSCRDP---DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
N ++ GK + I+ + + +++ NLFVKNL + D+ +L+ +F FG I S
Sbjct: 230 AMNQAEIKGKKIEINRHEKKATRENPQQTKFNNLFVKNLPKGTDDDQLKGLFGKFGEIES 289
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
V E G K +G+V F+ + A AA+ +N + D+ + V + I K D P+ +
Sbjct: 290 VTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEMNKKQIDDQFLIVNQHISKKDNE-PTQGS 348
Query: 189 KY------------TNLFMKNLDSDVTEEHLVEKFS-KFGKIASLLIAR------DENGT 229
+ +N+++K + ++VTEE L + FS K I S+ + + D+
Sbjct: 349 RLNPITQNLNKTFNSNIYIKFIPNEVTEEELRKTFSMKDANIVSIKLTKFVKKIEDQEVQ 408
Query: 230 SRGFGFVNFDNPDDARRALEAMNGS-VIGSKVL 261
F ++ +D A++A++ + S V G+K L
Sbjct: 409 PYQFAYILYDTVLGAQKAIQTFDQSTVFGNKPL 441
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 547 QQKQILGERLYPLVEK-HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
++KQ +G +YP +E+ P KITGML++ + + LLL + + K EA+ +L
Sbjct: 618 EKKQFVGNSVYPTIEQAFGPQFAGKITGMLIDENAVDFNLLLTNQQYFTTKASEAMSLL 676
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 171/324 (52%), Gaps = 50/324 (15%)
Query: 272 REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG 331
R+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE L+ FS GTITSAKVM E G
Sbjct: 1 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGG 59
Query: 332 INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIE 391
+KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA +
Sbjct: 60 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 119
Query: 392 GSSANVI-------PSGY-----P-----SLYYTTPPGIVSQVPPRPGLMYQPLGLRTGW 434
VI PSGY P + YY PP ++Q+ P P W
Sbjct: 120 AVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPSQIAQLRPSP-----------RW 166
Query: 435 RANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GNMLPQVGA--HYMQQSSQSAASS 489
A G RP FQ P + P R M + +P+V + S+Q+
Sbjct: 167 TAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPR 222
Query: 490 KDSSNQQKGGQSKYVPNGRI--------RELNKGSGVSLGTFNSGGVMARKPDMLNGMLA 541
++ + VP + + LN V++ + V ++P + MLA
Sbjct: 223 PAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQ-PAVHVQGQEP-LTASMLA 280
Query: 542 APSPEQQKQILGERLYPLVEKHKP 565
+ P++QKQ+LGERL+PL++ P
Sbjct: 281 SAPPQEQKQMLGERLFPLIQAMHP 304
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 68/108 (62%), Gaps = 8/108 (7%)
Query: 178 KSDRVLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF 235
K DR+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFGF
Sbjct: 13 KQDRI-----TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGF 66
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
V F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 67 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 114
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 95 RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESAN 154
R GV NL+VKNL + ID+ RL++ F FG I S KV E G+SKG GFV F + E A
Sbjct: 19 RYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 76
Query: 155 AAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
A+ +NG V K +YV +K +R A TN +M+ + S
Sbjct: 77 KAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMAS 117
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYV +L + D L FS F ++ S +V + GRS +G+V F SP +A +A+
Sbjct: 24 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 81
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL--IESIDN 113
N + K L ++ + R + R++ + N +++ + + ++ N
Sbjct: 82 MNGRIVATKPLYVALAQRK-EERQAHLTNQYMQRMASVRAVPN 123
>gi|387594015|gb|EIJ89039.1| hypothetical protein NEQG_00858 [Nematocida parisii ERTm3]
gi|387595783|gb|EIJ93406.1| hypothetical protein NEPG_01748 [Nematocida parisii ERTm1]
Length = 512
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 198/379 (52%), Gaps = 28/379 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVC-KDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++YVGD+ T+ ELF FS+ + ++ + K+ + + CY YV F AIE
Sbjct: 20 TIYVGDIPMATTESELFQIFSKVGQIYTISILRKEVSIVKDKCYAYVTFFDESSVPIAIE 79
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVAN----LFVKNLIESIDNVRLQEMFQNFGNII 127
N LHG +R+ P ++S V N + +KNL + DN L + F FG I+
Sbjct: 80 TFNFYSLHGSQIRVM-----PFNKESVVGNREGNIVIKNLPKETDNQTLYDTFIVFGPIL 134
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPS 185
SCKV + + G G++Q++ + A AI+ +N + K++ + I K ++ +
Sbjct: 135 SCKVVKNNLSECTGVGYIQYKDPKVAEVAIQMINKIVLNGKKLCATQCIPNDKREKKREN 194
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A +TN+++KN + +TEE + K ++G++ S L R ++G RGF F N+ + A
Sbjct: 195 VAKIFTNIYVKNFPAGITEEEIEAKLKEYGELTSFLAPRTDSGEMRGFAFANYQTHEMAA 254
Query: 246 RALEAMN-----GSVIGSKVLYAARAQKKAER-EQILRH--QFEEKRKERILKYKGSNVY 297
A+EA++ G G++ LY RA+ K ER E++L + Q E + R N+Y
Sbjct: 255 AAIEALHDKPFPGYPEGTENLYVQRAKLKNERVEEMLEYFSQVPEHERRR-------NIY 307
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGY 357
+ N+ ++ +E++ +FS+ G I + K+ D K N+ +G+V + E+A+KAV +
Sbjct: 308 ITNLPGELNEEDVVKYFSKYGPIVTYKLGTDAKN-NRSYGYVFYQKAEDAAKAVELANKS 366
Query: 358 MLHRKPLYVAIAQRKEDRQ 376
+ L VA + K+ R+
Sbjct: 367 EYCEQTLDVAFFKCKKLRE 385
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGT--SRGFGFVNFDNPDDARR 246
K +++ ++ TE L + FSK G+I ++ I R E + + +V F +
Sbjct: 17 KQNTIYVGDIPMATTESELFQIFSKVGQIYTISILRKEVSIVKDKCYAYVTFFDESSVPI 76
Query: 247 ALEAMN-GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
A+E N S+ GS QI F KE ++ + N+ +KN+ +
Sbjct: 77 AIETFNFYSLHGS---------------QIRVMPF---NKESVVGNREGNIVIKNLPKET 118
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
++ L F G I S KV+++ G G++ + P+ A A+ + +L+ K L
Sbjct: 119 DNQTLYDTFIVFGPILSCKVVKNNLSECTGVGYIQYKDPKVAEVAIQMINKIVLNGKKL 177
>gi|326430719|gb|EGD76289.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 642
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 136/256 (53%), Gaps = 8/256 (3%)
Query: 2 AVVPPTATTP----ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGY 57
V P P ASLYVGDL P V + ELF+ FS S+ SVRVC+D T S YGY
Sbjct: 56 GVAGPVPANPQGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGY 115
Query: 58 VNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ 117
VNF DA A+ N LHG+ +RI RDP R+SGV N+F+ L +V L+
Sbjct: 116 VNFNKAEDAEAAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLR 175
Query: 118 EMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV-GDKRIYVGRFI 176
+ F+ FG I+SCK G+ +G GFV FE + A AI NG GD+++ V F
Sbjct: 176 DTFEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFK 235
Query: 177 --KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS-LLIARDENGTSRGF 233
K+ ++ +TN+++K+L EE L + F +G I S L T R +
Sbjct: 236 PRKQREQEQEERTKNFTNVYVKSLRRGADEEELGKLFEPYGDITSKALRTYKLKDTERPY 295
Query: 234 GFVNFDNPDDARRALE 249
GFVNF + + A++ +E
Sbjct: 296 GFVNFADTEAAQKCVE 311
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 108/369 (29%), Positives = 179/369 (48%), Gaps = 35/369 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ L D T L D F +F + S + D + GR +G+V+F P A RAI
Sbjct: 158 GNIFISGLPADTTSVHLRDTFEQFGKILSCKAVLDHS-GRCRGFGFVHFEDPKVAERAIA 216
Query: 72 VKNHTQLHG-KMLRIS------WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
N G + LR++ ++ + R N++VK+L D L ++F+ +G
Sbjct: 217 EANGKDAGGDRKLRVAPFKPRKQREQEQEERTKNFTNVYVKSLRRGADEEELGKLFEPYG 276
Query: 125 NIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV-GRFIKKSDRV 182
+I S + T + + +GFV F E+A +E G YV G ++ +V
Sbjct: 277 DITSKALRTYKLKDTERPYGFVNFADTEAAQKCVEE--GEMHQRDIFYVDGMAFEEGKKV 334
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ + S+V HL GK++ ++ + E+G + D
Sbjct: 335 -----EDFVKTVEECAGSEVERHHLQ---VADGKLSGFILFK-EHGE---------ETVD 376
Query: 243 DARRAL-EAMNGSV--IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
A L E M + I LY RAQKK ER + LR + + + R L+ +G N+YVK
Sbjct: 377 KAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRRR--LQERRRELRQRGGNLYVK 434
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N +++VT+E+L+ F +CG + S KVMRD++G+++ FGFV F++ EEA A+ + L
Sbjct: 435 NFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAKKNRQPL 494
Query: 360 HRKPLYVAI 368
+P+YVA
Sbjct: 495 QDRPIYVAF 503
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 105 KNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTT 164
KNL +SIDN L + F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 165 VGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222
+ D++++VGRF + +R L + A ++TN+++KN D+ +E L E F KFG S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 119
Query: 223 ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
DE+G S+GFGFV+F+ +DA++A++ MNG + K +Y RAQKK ER+ L+ +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 177
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 111/188 (59%), Gaps = 11/188 (5%)
Query: 196 KNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSV 255
KNLD + + L + FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 256 IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS 315
+ + ++ R + + ERE L + +E +NVY+KN +D+ DE LK F
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFG 109
Query: 316 QCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
+ G S KVM DE G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +R
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 376 QAHLQLQY 383
Q L+ ++
Sbjct: 170 QTELKRKF 177
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 95/170 (55%), Gaps = 8/170 (4%)
Query: 18 DLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77
+L + + L+D FS F ++ S +V D S YG+V+F + A RAIE N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 78 LHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
L+ + + + S R+ + AR N+++KN E +D+ RL+E+F FG +S KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 119
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 105 KNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTT 164
KNL +SIDN L + F FGNI+SCKV E+G SKG+ FV FET+++A+ AIE +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 165 VGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222
+ D++++VGRF + +R L + A ++TN+++KN D+ +E L E FSK+GK S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKV 119
Query: 223 ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
D G S+GFGFV+F+ +DA +A+E MNG + K+++ RAQKK ER+ L+ +F
Sbjct: 120 MTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQAELKRKF 177
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 111/188 (59%), Gaps = 11/188 (5%)
Query: 196 KNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSV 255
KNLD + + L + FS FG I S + DENG S+G+ FV+F+ D A RA+E MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 256 IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS 315
+ + ++ R + + ERE L + +E +NVY+KN DD+ DE LK FS
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKE----------FTNVYIKNFGDDMDDERLKEMFS 109
Query: 316 QCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
+ G S KVM D G +KGFGFV F E+A+KAV +G ++ K ++V AQ+K +R
Sbjct: 110 KYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVER 169
Query: 376 QAHLQLQY 383
QA L+ ++
Sbjct: 170 QAELKRKF 177
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Query: 18 DLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77
+L + + L+D FS F ++ S +V D S Y +V+F + A RAIE N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 78 LHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
L+ + + + S R+ + AR N+++KN + +D+ RL+EMF +G +S KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKV 119
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
T GKSKG GFV FE E AN A+E +NG V K ++VGR KK +R
Sbjct: 120 MTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVER 169
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
A + A ++Y+ + D+ D L + FS++ SV+V DS TG+S +G+V+F
Sbjct: 78 AELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKVMTDS-TGKSKGFGFVSFE 136
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRI 85
DA +A+E N ++GKM+ +
Sbjct: 137 KHEDANKAVEEMNGKDVNGKMVFV 160
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Query: 105 KNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTT 164
KNL +SIDN L + F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 165 VGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222
+ D++++VGRF + +R L + A ++TN+++KN D+ +E L E F K+G S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKV 119
Query: 223 ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
DE+G S+GFGFV+F+ +DA++A++ MNG + K +Y RAQKK ER+ L+ +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVERQTELKRKF 177
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 110/188 (58%), Gaps = 11/188 (5%)
Query: 196 KNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSV 255
KNLD + + L + FS FG I S + DENG S+G+GFV F+ + A RA+E MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 256 IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS 315
+ + ++ R + + ERE L + +E +NVY+KN +D+ DE LK F
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKE----------FTNVYIKNFGEDMDDERLKEVFG 109
Query: 316 QCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
+ G S KVM DE G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +R
Sbjct: 110 KYGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVER 169
Query: 376 QAHLQLQY 383
Q L+ ++
Sbjct: 170 QTELKRKF 177
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Query: 18 DLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77
+L + + L+D FS F ++ S +V D S YG+V F + A RAIE N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 78 LHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
L+ + + + S R+ + AR N+++KN E +D+ RL+E+F +G +S KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKV 119
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
T E GKSKG GFV FE E A A++ +NG + K IYVGR KK +R
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVER 169
>gi|348677381|gb|EGZ17198.1| hypothetical protein PHYSODRAFT_354553 [Phytophthora sojae]
Length = 317
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 137/213 (64%), Gaps = 11/213 (5%)
Query: 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFV 145
WS RDP RKSGV N+FVKNL SIDN L + F FGNI+SCKVA G SKG+G+V
Sbjct: 2 WSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYV 61
Query: 146 QFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEE 205
+ET E+A AI +NG + ++VG F K+ DR A +TN ++KN+ + T+
Sbjct: 62 HYETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDR---PDADDWTNCYVKNIPTQWTDA 118
Query: 206 HLVEKFSKFGKIASLLIARDENG--TSRGFGFVNFDNPDDARRALEAMNGSVI--GSKV- 260
L+++F FGK+ S ++ +D +RGFGFVN+++ + A +A++A+NG G V
Sbjct: 119 DLLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGVE 178
Query: 261 --LYAARAQKKAEREQILRHQFEEKRKERILKY 291
LY +AQK++ERE+ LR++FE+ + ERI KY
Sbjct: 179 TELYVGKAQKRSERERELRNKFEQLKMERINKY 211
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 125/289 (43%), Gaps = 53/289 (18%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEA 250
N+F+KNLD+ + + L + FS FG I S +A D G S+G+G+V+++ + A A+
Sbjct: 16 NIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHYETAEAATEAIAK 75
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+NG +I ++ QK R++R +N YVKNI TD +L
Sbjct: 76 INGMLIAGTEVFVGHFQK---------------RQDRPDADDWTNCYVKNIPTQWTDADL 120
Query: 311 KAHFSQCGTITSAKVMRDEKG--INKGFGFVCFSSPEEASKAVNTFHGYMLH-----RKP 363
F G + SA VM+D N+GFGFV + E A KAV+ +G
Sbjct: 121 LKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGVETE 180
Query: 364 LYVAIAQRKEDRQAHLQLQYAQ-HMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPG 422
LYV AQ++ +R+ L+ ++ Q M I +AN +P+ VPP+
Sbjct: 181 LYVGKAQKRSERERELRNKFEQLKMERINKYTANA--RNHPA----------RDVPPQ-- 226
Query: 423 LMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNML 471
G +PP P P P+ + NM+
Sbjct: 227 ---------------GVMPPAAPVQNAGPEPLTSAALAAASPEIQKNMI 260
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 50/62 (80%)
Query: 544 SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
SPE QK ++GERLYPL+ + +P+L KITGMLLEMDN ELL LLESPE+L K+ EA+ V
Sbjct: 252 SPEIQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKISEALAV 311
Query: 604 LK 605
L+
Sbjct: 312 LE 313
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+++V +L + + L+D FS F ++ S +V D TTG S YGYV++ + A AI
Sbjct: 15 GNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHYETAEAATEAIA 74
Query: 72 VKNHTQLHGKMLRIS-WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + G + + + R N +VKN+ + L + F+ FG ++S
Sbjct: 75 KINGMLIAGTEVFVGHFQKRQDRPDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAV 134
Query: 131 VA--TSEDGKSKGHGFVQFETEESANAAIENLNGTTVG-----DKRIYVGRFIKKSDR 181
V + +++G GFV +E E+A+ A++ LNG + + +YVG+ K+S+R
Sbjct: 135 VMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGVETELYVGKAQKRSER 192
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 283 KRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCF 341
+R + K N++VKN+D + ++ L FS G I S KV D G +KG+G+V +
Sbjct: 4 QRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHY 63
Query: 342 SSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
+ E A++A+ +G ++ ++V Q+++DR
Sbjct: 64 ETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDR 97
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 129/197 (65%), Gaps = 7/197 (3%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEE 151
PD+RK +++KNL SIDN + + F FGNI++C VA EDG S+G+GFV F+TEE
Sbjct: 110 PDSRK-----IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEE 164
Query: 152 SANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF 211
+A AAIE +NG +++++V +FI + DR A + NL++KNL + TE+HL E F
Sbjct: 165 AARAAIEKVNGMLCNNQKVHVVKFIPRRDRE-QEKATHFKNLYVKNLGEEFTEQHLREMF 223
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG-SKVLYAARAQKKA 270
+G+I S + D+ G SR FGFV ++NP A A+ ++G +G +K LY ARA KA
Sbjct: 224 EPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKA 283
Query: 271 EREQILRHQFEEKRKER 287
ER+Q + + EE+++++
Sbjct: 284 ERQQEINRKLEERKRQK 300
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 111/188 (59%), Gaps = 14/188 (7%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL+ + + + + FS FG I + +A+DE+G SRG+GFV+FD + AR A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEKVN 174
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + ++ ++ + + +REQ E+ +K N+YVKN+ ++ T++ L+
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQ-----------EKATHFK--NLYVKNLGEEFTEQHLRE 221
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML-HRKPLYVAIAQR 371
F G ITS K+M D++G ++ FGFV + +P+ A AV HG L K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 372 KEDRQAHL 379
K +RQ +
Sbjct: 282 KAERQQEI 289
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 99/179 (55%), Gaps = 7/179 (3%)
Query: 9 TTPAS--LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
+TP S +Y+ +L + + ++D FS F ++ + V KD G S YG+V+F + A
Sbjct: 108 STPDSRKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDE-DGNSRGYGFVHFDTEEAA 166
Query: 67 IRAIEVKNHTQLHGKMLRISWSC--RDPDARK-SGVANLFVKNLIESIDNVRLQEMFQNF 123
AIE N + + + + RD + K + NL+VKNL E L+EMF+ +
Sbjct: 167 RAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLGEEFTEQHLREMFEPY 226
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD-KRIYVGRFIKKSDR 181
G I S K+ ++G+S+ GFV +E +SA AA+ L+G +GD K +YV R + K++R
Sbjct: 227 GRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAER 285
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 127/196 (64%), Gaps = 6/196 (3%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEE 151
PD+ K +++KNL SIDN + + F FGNI++C VA E G S+G+GFVQF++EE
Sbjct: 125 PDSGK-----IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEE 179
Query: 152 SANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF 211
+A AAIE +NG ++++V ++I + DR A ++ NL++KN + D +E+++ E F
Sbjct: 180 AARAAIEKVNGILCNSQKVHVVKYIPRRDRE-QEKATQFRNLYVKNFNEDFSEQNMKEMF 238
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
+G+I S I DE G S+ FGFV F+NP A A+ A+NG +G K LY ARA K E
Sbjct: 239 EPYGRITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIE 298
Query: 272 REQILRHQFEEKRKER 287
R+Q + + EE+++++
Sbjct: 299 RQQEINRKLEERKRQK 314
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 108/184 (58%), Gaps = 13/184 (7%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL+ + + + + FS FG I + +A+DE+G SRG+GFV FD+ + AR A+E +N
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVN 189
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + S+ ++ + + +REQ QF N+YVKN ++D +++ +K
Sbjct: 190 GILCNSQKVHVVKYIPRRDREQEKATQFR-------------NLYVKNFNEDFSEQNMKE 236
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
F G ITS K+M DE+G +K FGFV F +P+ A AV +G L K LYVA A K
Sbjct: 237 MFEPYGRITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSK 296
Query: 373 EDRQ 376
+RQ
Sbjct: 297 IERQ 300
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 4/171 (2%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+Y+ +L + + ++D FS F ++ + V KD G S YG+V F S A AIE
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDE-HGNSRGYGFVQFDSEEAARAAIEKV 188
Query: 74 NHTQLHGKMLRISWSC--RDPDARK-SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + + + + RD + K + NL+VKN E ++EMF+ +G I S K
Sbjct: 189 NGILCNSQKVHVVKYIPRRDREQEKATQFRNLYVKNFNEDFSEQNMKEMFEPYGRITSHK 248
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+ T E+G+SK GFV FE +SA AA+ LNG +GDK +YV R + K +R
Sbjct: 249 IMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIER 299
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355
+Y+KN++ + ++ + FS G I + V +DE G ++G+GFV F S E A A+ +
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVN 189
Query: 356 GYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
G + + + ++V + DR+ Q+
Sbjct: 190 GILCNSQKVHVVKYIPRRDREQEKATQF 217
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
AT +LYV + + D ++ + + F + + S ++ D GRS +G+V F +P A+
Sbjct: 214 ATQFRNLYVKNFNEDFSEQNMKEMFEPYGRITSHKIMTDEE-GRSKRFGFVAFENPQSAL 272
Query: 68 RAIEVKNHTQLHGKMLRIS 86
A+ N QL K L ++
Sbjct: 273 AAVIALNGKQLGDKYLYVA 291
>gi|440293231|gb|ELP86374.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 538
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 209/423 (49%), Gaps = 54/423 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFS-EFKS-LASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
+++V L +VT+ L+ S +F+S +ASV V ++ T YVN + A +AI
Sbjct: 14 TVFVSGLTKNVTESLLYKEISAKFESQVASVHVSRNE--HYDTAIAYVNMNTHEAAKKAI 71
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
E N + GK + + WS +D R NLFVKN+ +++ +Q++F FG IIS K
Sbjct: 72 ETMNGALIDGKPVNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVK 131
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLN--GTTVGDKRIYVGRFIKKSDRVLPSPAA 188
++ +E+G S G G+V++ T E+A A+EN +G+ V +F K++
Sbjct: 132 LSVNENGASNGFGYVKYRTIEAALKAVENAAEIKAKIGEDNFIVAKFEKQTKN------- 184
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFG--------KIASLLIARDENGTSRGFGFVNFDN 240
K TNL++ N+D V EE V+ F FG K L ++DE T+ GFV+F+N
Sbjct: 185 KKTNLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFASKDEYPTA--MGFVDFEN 242
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERIL----KYKGSNV 296
+DA++AL A +V+G + K ER + +++ K E + KYK N+
Sbjct: 243 EEDAQKALTAPKNNVLGQGEIKVVYYMSKKER----KREYQLKNNEIMASIKGKYKEFNM 298
Query: 297 YVKNIDD---DVTDEELKAHFSQCGTITSAKVMRDEKGINKG---FGFVCFSSPEEASKA 350
YVK +D +D E+++ F+ CG I S ++ K NK +VCF+S E KA
Sbjct: 299 YVKTSNDSEHSTSDAEIRSAFADCGEIYSIRI----KYFNKSPTDVAYVCFTSQEGYDKA 354
Query: 351 --VNTFHGYMLHRKPLYVAIAQRKEDRQAH-----LQLQYAQHMAGIEGSSANVIPSGYP 403
+ G+ +++ R+E A+ + YA + S N+ P G P
Sbjct: 355 DKIGKELGWSVYK------FKTRQERSSAYQILNNYPMNYAFFNQMMNFMSQNMQPYGLP 408
Query: 404 SLY 406
+Y
Sbjct: 409 GMY 411
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 131/292 (44%), Gaps = 30/292 (10%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T +L+V ++ V+ E+ D F F + SV++ + G S +GYV + + A++A
Sbjct: 99 TQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVNE-NGASNGFGYVKYRTIEAALKA 157
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDAR-KSGVANLFVKNLIESIDNVRLQEMFQNFG---- 124
+E N ++ K+ ++ + + K+ NL+V N+ +S++ + + F+ FG
Sbjct: 158 VE--NAAEIKAKIGEDNFIVAKFEKQTKNKKTNLYVSNIDKSVNEEQFVKYFETFGPLRK 215
Query: 125 ---NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
N A S+D GFV FE EE A A+ +G I V ++ K +R
Sbjct: 216 NPDNKFQVLFA-SKDEYPTAMGFVDFENEEDAQKALTAPKNNVLGQGEIKVVYYMSKKER 274
Query: 182 ----------VLPSPAAKYT--NLFMK---NLDSDVTEEHLVEKFSKFGKIASLLIARDE 226
++ S KY N+++K + + ++ + F+ G+I S+ I +
Sbjct: 275 KREYQLKNNEIMASIKGKYKEFNMYVKTSNDSEHSTSDAEIRSAFADCGEIYSIRI-KYF 333
Query: 227 NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
N + +V F + + +A + G +G V Q+++ QIL +
Sbjct: 334 NKSPTDVAYVCFTSQEGYDKADKI--GKELGWSVYKFKTRQERSSAYQILNN 383
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 128/197 (64%), Gaps = 7/197 (3%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEE 151
PD+ K +++KNL SIDN + + F FGNI++C VA EDG S+G+GFV F++EE
Sbjct: 99 PDSGK-----IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEE 153
Query: 152 SANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF 211
+A AAIE +NG +++++V +FI + DR A + NL++KNL + TE+HL E F
Sbjct: 154 AARAAIEKVNGMLCNNQKVHVVKFIPRRDRE-QEKATHFKNLYVKNLSEEFTEQHLREMF 212
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG-SKVLYAARAQKKA 270
+G+I S + DE G SR FGFV F+NP A A+ ++G +G +K LY ARA KA
Sbjct: 213 EPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKA 272
Query: 271 EREQILRHQFEEKRKER 287
ER+Q + + EE+++++
Sbjct: 273 ERQQEINRKLEERKRQK 289
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 111/185 (60%), Gaps = 14/185 (7%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL+ + + + + FS FG I + +A+DE+G SRG+GFV+FD+ + AR A+E +N
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 163
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + ++ ++ + + +REQ E+ +K N+YVKN+ ++ T++ L+
Sbjct: 164 GMLCNNQKVHVVKFIPRRDREQ-----------EKATHFK--NLYVKNLSEEFTEQHLRE 210
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML-HRKPLYVAIAQR 371
F G ITS K+M DE+G ++ FGFV F +P+ A AV HG L K LYVA A
Sbjct: 211 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 270
Query: 372 KEDRQ 376
K +RQ
Sbjct: 271 KAERQ 275
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+Y+ +L + + ++D FS F ++ + V KD G S YG+V+F S A AIE
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDE-DGNSRGYGFVHFDSEEAARAAIEKV 162
Query: 74 NHTQLHGKMLRISWSC--RDPDARK-SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + + + + RD + K + NL+VKNL E L+EMF+ +G I S K
Sbjct: 163 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 222
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD-KRIYVGRFIKKSDR 181
+ E+G+S+ GFV FE +SA AA+ L+G +GD K +YV R + K++R
Sbjct: 223 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKAER 274
>gi|343961833|dbj|BAK62504.1| polyadenylate-binding protein 3 [Pan troglodytes]
Length = 308
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 168/327 (51%), Gaps = 66/327 (20%)
Query: 329 EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMA 388
E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+RQA+L +Y Q MA
Sbjct: 3 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMA 62
Query: 389 GIEG-SSANVIPSGY-----P-----SLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRAN 437
+ + PSGY P + YY PP ++Q+ P P W A
Sbjct: 63 SVRAVPNQRAPPSGYFMTAVPQTQNHAAYY--PPSQITQLRPSP-----------RWTAQ 109
Query: 438 GFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GNMLPQVGAHYMQQSSQSAASSKDSSN 494
G RP FQ P + P R M + +P+V S+Q A ++S
Sbjct: 110 G----ARPHPFQNKPSAIRPGAPRVPFSTMRPASSQIPRV------MSTQRVA---NTST 156
Query: 495 QQKG--------------------GQSKYVPNGR--IRELNKGSGVSLGTFNSGGVMARK 532
Q G + KY R + LN V T V +
Sbjct: 157 QTVGPRPAAAAAAAAAATPAVRTVARYKYAAGVRNPQQHLNAQPQV---TMQQPAVHVQG 213
Query: 533 PDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPE 591
+ L LA+ P++QKQ+LGERL+PL++ P L KITGMLLE DNSELL +LESPE
Sbjct: 214 QETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLETDNSELLYMLESPE 273
Query: 592 SLAVKVEEAVQVLKLSEAKVSTQEAIH 618
SL KV+EAV VL+ +AK +TQ+A++
Sbjct: 274 SLRSKVDEAVAVLQAHQAKEATQKAVN 300
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 226 ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
E G S+GFGFV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +++ ++
Sbjct: 3 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 60
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 135 EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLF 194
E G+SKG GFV F + E A A+ +NG V K +YV +K +R A TN +
Sbjct: 3 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAYLTNEY 57
Query: 195 MKNLDS 200
M+ + S
Sbjct: 58 MQRMAS 63
>gi|396082305|gb|AFN83915.1| polyadenylate-binding protein 2 [Encephalitozoon romaleae SJ-2008]
Length = 415
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 169/329 (51%), Gaps = 27/329 (8%)
Query: 93 DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEES 152
D R N+FVKNL ES + L + F FG I+SCKVAT+ GKSKG+GFVQF+ +++
Sbjct: 4 DERPPETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKKA 63
Query: 153 ANAAIE---NLNGTTVGDKRIYVGRF---IKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
A I+ NLNG +G +I V + +KK + + +TN F+KN D TE+
Sbjct: 64 AKKVIKNFNNLNGLMLGGNKIAVELYNPDMKKGES--KKVSTMFTNCFIKNFPVDTTEKE 121
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG------SVIGSKV 260
L+E ++GK+ SL ++G +GF F NF++ + A A+ ++G S G +
Sbjct: 122 LLELLVRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSSKDGGEP 181
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKG----SNVYVKNIDDDVTDEELKAHFSQ 316
Y + Q+K ER + LR FE+ L +G N+Y+ NI + EEL F +
Sbjct: 182 FYIQKGQRKEERAEELRKMFEQ------LSMQGQSYRKNLYITNIPEGFGAEELNNIFKE 235
Query: 317 CGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQ 376
G+ITS V D K + ++C+S+PEEAS AV + L L V+ + K +R
Sbjct: 236 FGSITSMSVGIDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVSYFKNKLERM 295
Query: 377 AHLQ---LQYAQHMAGIEGSSANVIPSGY 402
+ L Y + + N +GY
Sbjct: 296 KEKEFGGLGYKPGIPYMYNQGVNFTSNGY 324
>gi|74762343|sp|Q6NV95.1|PAB1L_HUMAN RecName: Full=Putative protein PABPC1-like; AltName:
Full=Polyadenylate-binding protein pseudogene 2
gi|158258146|dbj|BAF85046.1| unnamed protein product [Homo sapiens]
Length = 269
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 132/232 (56%), Gaps = 17/232 (7%)
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
K SK G +S+ + DE G S+GFGFV+F+ +D + A++ +NG Y A KK
Sbjct: 31 KESKVGPASSVKVITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKK 89
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
E + L+ +FE+ +++RI +Y+G+NV VKN+D+ + DE L+ FS G I SA VM E
Sbjct: 90 VEEQTELKCKFEQMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMM-E 148
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAG 389
G +K FGFVCFSSPEE +KAV +G ++ KPL+VA+AQ KE R AH QY Q MA
Sbjct: 149 GGCSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQYMQKMAS 208
Query: 390 IEGSSANVIPSGYP---SLYYTT------------PPGIVSQVPPRPGLMYQ 426
+ VI P + Y+ PPG ++Q+ P P Q
Sbjct: 209 VRAVPHPVINPYQPAPSTCYFVAAIPQTQNRAAYYPPGQIAQLRPSPPWAVQ 260
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 20/175 (11%)
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIK------ 177
G S KV T E GKSKG GFV FE E A+ ++NG + Y+ K
Sbjct: 36 GPASSVKVITDEGGKSKGFGFVSFERHEDPQTAM-DVNGKEFSGNQTYICLAPKKVEEQT 94
Query: 178 ---------KSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG 228
K DR+ A N+ +KNLD + +E L ++FS FG I S + E G
Sbjct: 95 ELKCKFEQMKQDRITRYQGA---NVCVKNLDESIDDERLQKEFSPFGIINSANVMM-EGG 150
Query: 229 TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
S+ FGFV F +P++ +A+ AMNG ++ SK L+ A AQ K +R +Q+ +K
Sbjct: 151 CSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQYMQK 205
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
Query: 39 ASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS---------- 88
+SV+V D G+S +G+V+F D A++V N + G I +
Sbjct: 39 SSVKVITDEG-GKSKGFGFVSFERHEDPQTAMDV-NGKEFSGNQTYICLAPKKVEEQTEL 96
Query: 89 -CR------DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKG 141
C+ D R G AN+ VKNL ESID+ RLQ+ F FG I S V E G SK
Sbjct: 97 KCKFEQMKQDRITRYQG-ANVCVKNLDESIDDERLQKEFSPFGIINSANVMM-EGGCSKR 154
Query: 142 HGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSD 201
GFV F + E A+ +NG V K ++V K R+ A +TN +M+ + S
Sbjct: 155 FGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRL-----AHFTNQYMQKMASV 209
Query: 202 VTEEHLV 208
H V
Sbjct: 210 RAVPHPV 216
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 293 GSNVYVKNIDDDVTDE-EL--KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASK 349
G NV+V E EL +A S+ G +S KV+ DE G +KGFGFV F E+
Sbjct: 8 GLNVFVGRFRSPKEQEAELGARAKESKVGPASSVKVITDEGGKSKGFGFVSFERHEDPQT 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
A++ +G Y+ +A +K + Q L+ ++ Q
Sbjct: 68 AMDV-NGKEFSGNQTYICLAPKKVEEQTELKCKFEQ 102
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 124/187 (66%), Gaps = 2/187 (1%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+++KNL SIDN + E F FGNI++C VA E+G S+G+GFV F++EE+A AAIE +N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G +++++V +FI + DR A + NL++KNL + TE+HL E F +G+I S
Sbjct: 169 GMLCNNQKVHVVKFIPRRDRE-QEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 227
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG-SKVLYAARAQKKAEREQILRHQF 280
+ DE G SR FGFV F+NP A A+ ++G +G +K LY ARA KAER+Q + +
Sbjct: 228 LMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 287
Query: 281 EEKRKER 287
EE+++++
Sbjct: 288 EERKRQK 294
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 110/185 (59%), Gaps = 14/185 (7%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL+ + + + E FS FG I + +A+DE G SRG+GFV+FD+ + AR A+E +N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + ++ ++ + + +REQ E+ +K N+YVKN+ ++ T++ L+
Sbjct: 169 GMLCNNQKVHVVKFIPRRDREQ-----------EKATHFK--NLYVKNLSEEFTEQHLRE 215
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML-HRKPLYVAIAQR 371
F G ITS K+M DE+G ++ FGFV F +P+ A AV HG L K LYVA A
Sbjct: 216 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALS 275
Query: 372 KEDRQ 376
K +RQ
Sbjct: 276 KAERQ 280
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+Y+ +L + + +++ FS F ++ + V KD G S YG+V+F S A AIE
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDE-EGNSRGYGFVHFDSEEAARAAIEKV 167
Query: 74 NHTQLHGKMLRISWSC--RDPDARK-SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + + + + RD + K + NL+VKNL E L+EMF+ +G I S K
Sbjct: 168 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 227
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD-KRIYVGRFIKKSDR 181
+ E+G+S+ GFV FE +SA AA+ L+G +GD K +YV R + K++R
Sbjct: 228 LMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAER 279
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 124/187 (66%), Gaps = 2/187 (1%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+++KNL SIDN + + F FGNI++C VA EDG S+G+GFV F++EE+A AAIE +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G +++++V +FI + DR A + NL++KNL + TE+HL E F +G+I S
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-QEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG-SKVLYAARAQKKAEREQILRHQF 280
+ DE G SR FGFV ++NP A A+ ++G +G +K LY ARA KAER+Q + +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 281 EEKRKER 287
EE+++++
Sbjct: 294 EERKRQK 300
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 111/185 (60%), Gaps = 14/185 (7%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL+ + + + + FS FG I + +A+DE+G SRG+GFV+FD+ + AR A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + ++ ++ + + +REQ E+ +K N+YVKN+ ++ T++ L+
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQ-----------EKATHFK--NLYVKNLSEEFTEQHLRE 221
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML-HRKPLYVAIAQR 371
F G ITS K+M DE+G ++ FGFV + +P+ A AV HG L K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 372 KEDRQ 376
K +RQ
Sbjct: 282 KAERQ 286
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+Y+ +L + + ++D FS F ++ + V KD G S YG+V+F S A AIE
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDE-DGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 74 NHTQLHGKMLRISWSC--RDPDARK-SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + + + + RD + K + NL+VKNL E L+EMF+ +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD-KRIYVGRFIKKSDR 181
+ E+G+S+ GFV +E +SA AA+ L+G +GD K +YV R + K++R
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAER 285
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 121/178 (67%), Gaps = 3/178 (1%)
Query: 105 KNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTT 164
KNL +SIDN L + F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 165 VGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222
+ D++++VGRF + +R L + A ++TN+++KN D+ +E L + F KFG S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 119
Query: 223 ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
DE+G S+GFGFV+F+ +DA++A++ MNG + K +Y RAQKK ER+ + +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEXKRKF 177
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 110/188 (58%), Gaps = 11/188 (5%)
Query: 196 KNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSV 255
KNLD + + L + FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 256 IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS 315
+ + ++ R + + ERE L + +E +NVY+KN +D+ DE LK F
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFG 109
Query: 316 QCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
+ G S KVM DE G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +R
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 376 QAHLQLQY 383
Q + ++
Sbjct: 170 QTEXKRKF 177
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 95/170 (55%), Gaps = 8/170 (4%)
Query: 18 DLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77
+L + + L+D FS F ++ S +V D S YG+V+F + A RAIE N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 78 LHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
L+ + + + S R+ + AR N+++KN E +D+ RL+++F FG +S KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 119
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
A + A ++Y+ + D+ D L D F +F SV+V D +G+S +G+V+F
Sbjct: 78 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFE 136
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRI 85
DA +A++ N +L+GK + +
Sbjct: 137 RHEDAQKAVDEMNGKELNGKQIYV 160
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 124/187 (66%), Gaps = 2/187 (1%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+++KNL SIDN + + F FGNI++C VA EDG S+G+GFV F++EE+A AAIE +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G +++++V +FI + DR A + NL++KNL + TE+HL E F +G+I S
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-QEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG-SKVLYAARAQKKAEREQILRHQF 280
+ DE G SR FGFV ++NP A A+ ++G +G +K LY ARA KAER+Q + +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 281 EEKRKER 287
EE+++++
Sbjct: 294 EERKRQK 300
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 111/185 (60%), Gaps = 14/185 (7%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL+ + + + + FS FG I + +A+DE+G SRG+GFV+FD+ + AR A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + ++ ++ + + +REQ E+ +K N+YVKN+ ++ T++ L+
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQ-----------EKATHFK--NLYVKNLSEEFTEQHLRE 221
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML-HRKPLYVAIAQR 371
F G ITS K+M DE+G ++ FGFV + +P+ A AV HG L K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 372 KEDRQ 376
K +RQ
Sbjct: 282 KAERQ 286
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+Y+ +L + + ++D FS F ++ + V KD G S YG+V+F S A AIE
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDE-DGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 74 NHTQLHGKMLRISWSC--RDPDARK-SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + + + + RD + K + NL+VKNL E L+EMF+ +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD-KRIYVGRFIKKSDR 181
+ E+G+S+ GFV +E +SA AA+ L+G +GD K +YV R + K++R
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAER 285
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 124/187 (66%), Gaps = 2/187 (1%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+++KNL SIDN + + F FGNI++C VA EDG S+G+GFV F++EE+A AAIE +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G +++++V +FI + DR A + NL++KNL + TE+HL E F +G+I S
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-QEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG-SKVLYAARAQKKAEREQILRHQF 280
+ DE G SR FGFV ++NP A A+ ++G +G +K LY ARA KAER+Q + +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 281 EEKRKER 287
EE+++++
Sbjct: 294 EERKRQK 300
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 111/185 (60%), Gaps = 14/185 (7%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL+ + + + + FS FG I + +A+DE+G SRG+GFV+FD+ + AR A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + ++ ++ + + +REQ E+ +K N+YVKN+ ++ T++ L+
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQ-----------EKATHFK--NLYVKNLSEEFTEQHLRE 221
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML-HRKPLYVAIAQR 371
F G ITS K+M DE+G ++ FGFV + +P+ A AV HG L K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 372 KEDRQ 376
K +RQ
Sbjct: 282 KAERQ 286
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+Y+ +L + + ++D FS F ++ + V KD G S YG+V+F S A AIE
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDE-DGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 74 NHTQLHGKMLRISWSC--RDPDARK-SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + + + + RD + K + NL+VKNL E L+EMF+ +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD-KRIYVGRFIKKSDR 181
+ E+G+S+ GFV +E +SA AA+ L+G +GD K +YV R + K++R
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAER 285
>gi|440857933|gb|ELR44433.1| hypothetical protein M91_06292, partial [Bos grunniens mutus]
Length = 149
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKVA
Sbjct: 61 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 120
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNG 162
E G KG+GFV F+ +ESA AI+ +NG
Sbjct: 121 CDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 18/166 (10%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L++ +L +VTE L EKFS G I S+ + RD+ S G+ +VN+ P DA+RALE
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
+N VI K +I+ Q R + K NV++KN+ + ++ L
Sbjct: 61 LNFDVI------------KGRPVRIMWSQ----RDPSLRKSGVGNVFIKNLGKTIDNKAL 104
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
FS G I S KV DEKG KG+GFV F E A +A++ +G
Sbjct: 105 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 124/187 (66%), Gaps = 2/187 (1%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+++KNL SIDN + + F FGNI++C VA EDG S+G+GFV F++EE+A AAIE +N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G +++++V +FI + DR A + NL++KNL + TE+HL E F +G+I S
Sbjct: 165 GMLCNNQKVHVVKFIPRRDRE-QEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 223
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG-SKVLYAARAQKKAEREQILRHQF 280
+ DE G SR FGFV F++P A A+ ++G +G +K LY ARA KAER+Q + +
Sbjct: 224 LMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 283
Query: 281 EEKRKER 287
EE+++++
Sbjct: 284 EERKRQK 290
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 112/188 (59%), Gaps = 14/188 (7%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL+ + + + + FS FG I + +A+DE+G SRG+GFV+FD+ + AR A+E +N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + ++ ++ + + +REQ E+ +K N+YVKN+ ++ T++ L+
Sbjct: 165 GMLCNNQKVHVVKFIPRRDREQ-----------EKATHFK--NLYVKNLSEEFTEQHLRE 211
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML-HRKPLYVAIAQR 371
F G ITS K+M DE+G ++ FGFV F SP+ A AV HG L K LYVA A
Sbjct: 212 MFEPYGRITSHKLMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 271
Query: 372 KEDRQAHL 379
K +RQ +
Sbjct: 272 KAERQQEI 279
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 5/172 (2%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+Y+ +L + + ++D FS F ++ + V KD G S YG+V+F S A AIE
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDE-DGNSRGYGFVHFDSEEAARAAIEKV 163
Query: 74 NHTQLHGKMLRISWSC--RDPDARK-SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + + + + RD + K + NL+VKNL E L+EMF+ +G I S K
Sbjct: 164 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 223
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD-KRIYVGRFIKKSDR 181
+ E+G+S+ GFV FE+ +SA AA+ L+G +GD K +YV R + K++R
Sbjct: 224 LMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAER 275
>gi|71725699|gb|AAZ38995.1| polyA binding protein [Oxyuranus scutellatus]
Length = 306
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 169/317 (53%), Gaps = 48/317 (15%)
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
G +KGFGFVCFSSP+EA+KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA +
Sbjct: 1 GRSKGFGFVCFSSPDEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASV 60
Query: 391 EGSSANVI-------PSGY-----P-----SLYYTTPPGIVSQVPPRPGLMYQPLGLRTG 433
+ VI PSGY P + YY T ++Q+ P P
Sbjct: 61 RAVPSPVINPYQPAPPSGYFMAAIPQTQNRAAYYPT--SQITQLRPSPR----------- 107
Query: 434 WRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-GNMLPQVGA--HYMQQSSQSAASS 489
W A G RP FQ P + P R M + + +V + S+Q+
Sbjct: 108 WAAQG----ARPHPFQNMPGAIRPTAPRPPFSTMRPASQVTRVMSTQRVANTSTQTMGPR 163
Query: 490 KDSSNQQKGGQSKYVPNGRI--------RELNKGSGVSLGTFNSGGVMARKPDMLNGMLA 541
++ + VP + + LN V++ + V ++P + MLA
Sbjct: 164 PAAAAAATTPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQ-PAVHVQGQEP-LTASMLA 221
Query: 542 APSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAV 601
+ P++QKQ+LGERL+PL++ P L KITGMLLE+DNSELL +LESPE+L KV+EAV
Sbjct: 222 SAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPETLRSKVDEAV 281
Query: 602 QVLKLSEAKVSTQEAIH 618
VL+ +AK + Q+A++
Sbjct: 282 AVLQAHQAKEAAQKAVN 298
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 228 GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
G S+GFGFV F +PD+A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 1 GRSKGFGFVCFSSPDEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 56
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 137 GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMK 196
G+SKG GFV F + + A A+ +NG V K +YV +K +R A TN +M+
Sbjct: 1 GRSKGFGFVCFSSPDEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQ 55
Query: 197 NLDS 200
+ S
Sbjct: 56 RMAS 59
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 124/187 (66%), Gaps = 2/187 (1%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+++KNL SIDN + + F FGNI++C VA EDG S+G+GFV F++EE+A AAIE +N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G +++++V +FI + DR A + NL++KNL + TE+HL E F +G+I S
Sbjct: 168 GMLCNNQKVHVVKFIPRRDRE-QEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 226
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG-SKVLYAARAQKKAEREQILRHQF 280
+ DE G SR FGFV F++P A A+ ++G +G +K LY ARA KAER+Q + +
Sbjct: 227 LMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 286
Query: 281 EEKRKER 287
EE+++++
Sbjct: 287 EERKRQK 293
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 14/185 (7%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL+ + + + + FS FG I + +A+DE+G SRG+GFV+FD+ + AR A+E +N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + ++ ++ + + +REQ E+ +K N+YVKN+ ++ T++ L+
Sbjct: 168 GMLCNNQKVHVVKFIPRRDREQ-----------EKATHFK--NLYVKNLSEEFTEQHLRE 214
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML-HRKPLYVAIAQR 371
F G ITS K+M DE+G ++ FGFV F SP+ A AV HG L K LYVA A
Sbjct: 215 MFEPYGRITSHKLMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 274
Query: 372 KEDRQ 376
K +RQ
Sbjct: 275 KAERQ 279
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 5/172 (2%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+Y+ +L + + ++D FS F ++ + V KD G S YG+V+F S A AIE
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDE-DGNSRGYGFVHFDSEEAARAAIEKV 166
Query: 74 NHTQLHGKMLRISWSC--RDPDARK-SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + + + + RD + K + NL+VKNL E L+EMF+ +G I S K
Sbjct: 167 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 226
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD-KRIYVGRFIKKSDR 181
+ E+G+S+ GFV FE+ +SA AA+ L+G +GD K +YV R + K++R
Sbjct: 227 LMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAER 278
>gi|162605986|ref|XP_001713508.1| polyadenylate-binding protein [Guillardia theta]
gi|13794428|gb|AAK39803.1|AF165818_11 polyadenylate-binding protein [Guillardia theta]
Length = 389
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 143/266 (53%), Gaps = 4/266 (1%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVGDL+ + D +L F + ++ +R+CKD +G S Y YV F S A +A+
Sbjct: 6 LYVGDLNVSLKDIDLERIFRKDYEISGLRICKDIFSGNSLGYSYVYFNSYSSAKKALNDM 65
Query: 74 NH---TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N T+L +RI W + RKSG NLF+KNL + L +F +G I+S K
Sbjct: 66 NFYSDTELFKTPIRIMWKNNNNSIRKSGYGNLFIKNLPYNFSPKDLHSLFSEYGEILSSK 125
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY 190
+ +G S G+GFV ++ + A +AI NLNG + +K I V F+ KS R S +
Sbjct: 126 IKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLNKSQRERISSCDLF 185
Query: 191 TNLFMKNLDSD-VTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
TN+++KNL D ++E+ + F FGKI S+ I N +GF ++NF+N +DA A+
Sbjct: 186 TNIYVKNLPVDKLSEKVIFNLFGVFGKITSIFIPLWYNSIPKGFAYINFENHEDAEEAII 245
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQI 275
MN I K L +A K + + I
Sbjct: 246 TMNNRKIAGKSLIVCKAINKIKIDTI 271
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 136/275 (49%), Gaps = 19/275 (6%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENL 160
L+V +L S+ ++ L+ +F+ I ++ G S G+ +V F + SA A+ ++
Sbjct: 6 LYVGDLNVSLKDIDLERIFRKDYEISGLRICKDIFSGNSLGYSYVYFNSYSSAKKALNDM 65
Query: 161 NGTTVGDKRIYVG--RFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
N + D ++ R + K++ + Y NLF+KNL + + + L FS++G+I
Sbjct: 66 NFYS--DTELFKTPIRIMWKNNNNSIRKSG-YGNLFIKNLPYNFSPKDLHSLFSEYGEIL 122
Query: 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
S I D G+S G+GFV++ DA A+ +NG +I +K++ K++RE+I
Sbjct: 123 SSKIKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLNKSQRERISSC 182
Query: 279 QFEEKRKERILKYKGSNVYVKNI-DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+N+YVKN+ D ++++ + F G ITS + I KGF
Sbjct: 183 DL------------FTNIYVKNLPVDKLSEKVIFNLFGVFGKITSIFIPLWYNSIPKGFA 230
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
++ F + E+A +A+ T + + K L V A K
Sbjct: 231 YINFENHEDAEEAIITMNNRKIAGKSLIVCKAINK 265
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 14/185 (7%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAM 251
L++ +L+ + + L F K +I+ L I +D +G S G+ +V F++ A++AL M
Sbjct: 6 LYVGDLNVSLKDIDLERIFRKDYEISGLRICKDIFSGNSLGYSYVYFNSYSSAKKALNDM 65
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N Y+ K + ++ RK N+++KN+ + + ++L
Sbjct: 66 N--------FYSDTELFKTPIRIMWKNNNNSIRKSGY-----GNLFIKNLPYNFSPKDLH 112
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+ FS+ G I S+K+ D +G + G+GFV + ++A A+N +G ++ K + V
Sbjct: 113 SLFSEYGEILSSKIKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLN 172
Query: 372 KEDRQ 376
K R+
Sbjct: 173 KSQRE 177
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 119/177 (67%), Gaps = 3/177 (1%)
Query: 105 KNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTT 164
KNL +SIDN L + F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 165 VGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222
+ D++++VGRF + +R L + A ++TN+++KN D+ +E L E F FG S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 223 ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQ 279
DE+G S+GFGFV+F+ +DA++A+ MNG + K +Y RAQKK ER+ L+ +
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQTELKRK 176
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 107/185 (57%), Gaps = 11/185 (5%)
Query: 196 KNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSV 255
KNLD + + L + FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG +
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 256 IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS 315
+ + ++ R + + ERE L + +E +NVY+KN +D+ DE LK F
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFG 109
Query: 316 QCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
G S KVM DE G +KGFGFV F E+A KAV +G L+ K +YV AQ+K +R
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVER 169
Query: 376 QAHLQ 380
Q L+
Sbjct: 170 QTELK 174
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 18 DLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77
+L + + L+D FS F ++ S +V D S YG+V+F + A RAIE N
Sbjct: 2 NLDKSIDNKALYDXFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 78 LHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
L+ + + + S R+ + AR N+++KN E +D+ RL+E+F FG +S KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
T E GKSKG GFV FE E A A+ +NG + K+IYVGR KK +R
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVER 169
>gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa Japonica Group]
gi|113596003|dbj|BAF19877.1| Os06g0589700 [Oryza sativa Japonica Group]
Length = 399
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 111/162 (68%)
Query: 224 RDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
RD NG SR FGFVNF+ + AR A++ +NG IG VLY ARAQKK+ER+ L+ +FE
Sbjct: 2 RDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHD 61
Query: 284 RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS 343
+ ++ K + N+Y+KN+DDD+ DE L+ F G + S KVM D G +KG GFV F++
Sbjct: 62 KNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFAT 121
Query: 344 PEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
E+A+ A+ +G M+ +KPLYVA+AQRKE+R+A L +A+
Sbjct: 122 VEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFAR 163
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 92/161 (57%), Gaps = 12/161 (7%)
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA------- 188
+G S+ GFV FE E A A++NLNG ++GD +YV R KKS+R A
Sbjct: 5 NGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQ 64
Query: 189 -----KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
+ NL++KNLD D+ +EHL + F FG++AS + D +G S+G GFV+F +D
Sbjct: 65 KFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVED 124
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKR 284
A A+ MNG ++G K LY A AQ+K ER+ L F R
Sbjct: 125 ANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVR 165
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 16/150 (10%)
Query: 48 TTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDAR------------ 95
G S C+G+VNF A A++ N + +L ++ + + + +
Sbjct: 4 ANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEHDKN 63
Query: 96 ----KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEE 151
K NL++KNL + I++ L+++F+ FG + SCKV G+SKG GFV F T E
Sbjct: 64 QKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVE 123
Query: 152 SANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
AN AI +NG VG K +YV +K +R
Sbjct: 124 DANNAILKMNGKMVGKKPLYVAVAQRKEER 153
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
MRD G+++ FGFV F E A AV +G + LYVA AQ+K +RQA L+ ++
Sbjct: 1 MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKF 58
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 123/187 (65%), Gaps = 2/187 (1%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+++KNL SIDN + E F FGNI++C VA E+G S+G+GFV F++EE+A AAIE +N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G +++++V +FI + DR A + NL++KNL + TE+HL E F +G+I S
Sbjct: 172 GMLCNNQKVHVVKFIPRRDRE-QEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 230
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG-SKVLYAARAQKKAEREQILRHQF 280
+ DE G SR FGFV F+NP A A+ ++G +G +K LY ARA K ER+Q + +
Sbjct: 231 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNERQQEINRKL 290
Query: 281 EEKRKER 287
EE+++++
Sbjct: 291 EERKRQK 297
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 110/185 (59%), Gaps = 14/185 (7%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL+ + + + E FS FG I + +A+DE G SRG+GFV+FD+ + AR A+E +N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G + ++ ++ + + +REQ E+ +K N+YVKN+ ++ T++ L+
Sbjct: 172 GMLCNNQKVHVVKFIPRRDREQ-----------EKATHFK--NLYVKNLSEEFTEQHLRE 218
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML-HRKPLYVAIAQR 371
F G ITS K+M DE+G ++ FGFV F +P+ A AV HG L K LYVA A
Sbjct: 219 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 278
Query: 372 KEDRQ 376
K +RQ
Sbjct: 279 KNERQ 283
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+Y+ +L + + +++ FS F ++ + V KD G S YG+V+F S A AIE
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDE-EGNSRGYGFVHFDSEEAARAAIEKV 170
Query: 74 NHTQLHGKMLRISWSC--RDPDARK-SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + + + + RD + K + NL+VKNL E L+EMF+ +G I S K
Sbjct: 171 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 230
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGD-KRIYVGRFIKKSDR 181
+ E+G+S+ GFV FE +SA AA+ L+G +GD K +YV R + K++R
Sbjct: 231 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNER 282
>gi|326429915|gb|EGD75485.1| poly(A)-binding protein [Salpingoeca sp. ATCC 50818]
Length = 1688
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 131/248 (52%), Gaps = 4/248 (1%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P SLYVGDL P V + ELF+ FS S+ SVRVC+D T S YGYVNF D
Sbjct: 242 PQVNPGTSLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITHGSLGYGYVNFNKAED 301
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A A+ N LHG+ +RI RDP R+S N+ V L +V L++ F+ FG
Sbjct: 302 AEAAMGQLNFHDLHGRHIRIMKVERDPKKRRSDPRNIVVTGLPADTTSVHLRDTFEQFGK 361
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV-GDKRIYVGRFI--KKSDRV 182
I+SCK G+ +G GFV FE + A AI NG GD+++ V F K+ ++
Sbjct: 362 ILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQE 421
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS-LLIARDENGTSRGFGFVNFDNP 241
+TN+++K+L D EE L + F +G I S L T R +GFVNF +
Sbjct: 422 QEERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTERPYGFVNFADT 481
Query: 242 DDARRALE 249
+ A++ +E
Sbjct: 482 EAAQKCVE 489
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 183/379 (48%), Gaps = 35/379 (9%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
+ P ++ V L D T L D F +F + S + D + GR +G+V+F P A R
Sbjct: 333 SDPRNIVVTGLPADTTSVHLRDTFEQFGKILSCKAVLDHS-GRCRGFGFVHFEDPKVAER 391
Query: 69 AIEVKNHTQLHG-KMLRIS------WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
AI N G + LR++ ++ + R N++VK+L D L ++F+
Sbjct: 392 AIAEANGKDAGGDRKLRVAPFKPRKQREQEQEERTKNFTNVYVKSLRRDADEEELGKLFE 451
Query: 122 NFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV-GRFIKKS 179
+G+I S + T + + +GFV F E+A +E G YV G ++
Sbjct: 452 PYGDITSKALRTYKLKDTERPYGFVNFADTEAAQKCVEE--GEMHQRDIFYVDGMAFEEG 509
Query: 180 DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
+V + + S+V HL GK++ ++ + E+G +
Sbjct: 510 KKV-----EDFVKTVEECAGSEVERHHLQ---VADGKLSGFILFK-EHGE---------E 551
Query: 240 NPDDARRAL-EAMNGSV--IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
D A L E M + I LY RAQ K ER + LR + +E+R+E + +G N+
Sbjct: 552 TVDKAMTGLPEKMEAATDHISKAKLYVQRAQTKQERIRRLRRRLQERRREL--RQRGGNL 609
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
+VKN +++VT+E+L+ F +CG + KVMRD +G+++ FGFV F++ EEA A+ +
Sbjct: 610 FVKNFNENVTEEDLRKFFEECGHVIDVKVMRDMEGVSRCFGFVIFATREEAESAIAKKNR 669
Query: 357 YMLHRKPLYVAIAQRKEDR 375
L +P+YVA +++R
Sbjct: 670 QTLQDRPIYVAFHLTRQER 688
>gi|13365527|dbj|BAB39137.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 159 bits (403), Expect = 3e-36, Method: Composition-based stats.
Identities = 76/152 (50%), Positives = 106/152 (69%), Gaps = 3/152 (1%)
Query: 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQ 146
WS RDP RKSGV N+F+KN+ ESIDN L + FGNI+SCKV E+G SKG+GFV
Sbjct: 2 WSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVH 60
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTE 204
FET+E+AN AIE +NG + D++++VG F + +R+ + + A ++TN+++KN D+
Sbjct: 61 FETQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDIDR 120
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
E L FS+FGK S+ + DE+G SRGFGFV
Sbjct: 121 EKLKSIFSEFGKTLSVCVMTDESGCSRGFGFV 152
Score = 105 bits (261), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 11/150 (7%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+F+KN+D + + L + S FG I S + DENG S+G+GFV+F+ + A RA+E M
Sbjct: 16 NIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETM 74
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG ++ + ++ + + ER + + E +NVY+KN +D+ E+LK
Sbjct: 75 NGMLLNDRKVFVGHFKSRKERMAEMGAKAMEF----------TNVYIKNFSEDIDREKLK 124
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCF 341
+ FS+ G S VM DE G ++GFGFVC
Sbjct: 125 SIFSEFGKTLSVCVMTDESGCSRGFGFVCL 154
Score = 64.3 bits (155), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ ++ + + L+D S F ++ S +V D + YG+V+F + A RAIE
Sbjct: 15 GNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENGSKG--YGFVHFETQEAANRAIE 72
Query: 72 VKNHTQLHGKMLRIS-WSCRDPDARKSGV-----ANLFVKNLIESIDNVRLQEMFQNFGN 125
N L+ + + + + R + G N+++KN E ID +L+ +F FG
Sbjct: 73 TMNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDIDREKLKSIFSEFGK 132
Query: 126 IISCKVATSEDGKSKGHGFV 145
+S V T E G S+G GFV
Sbjct: 133 TLSVCVMTDESGCSRGFGFV 152
Score = 61.2 bits (147), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
N+++KN+D+ + ++ L S G I S KV+ DE G +KG+GFV F + E A++A+ T
Sbjct: 16 NIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETM 74
Query: 355 HGYMLHRKPLYVAIAQRKEDRQAHL 379
+G +L+ + ++V + +++R A +
Sbjct: 75 NGMLLNDRKVFVGHFKSRKERMAEM 99
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 117/176 (66%), Gaps = 3/176 (1%)
Query: 105 KNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTT 164
KNL +SJDN L + F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 165 VGDKRIYVGRFIKKSDR--VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222
+ D++++VGRF + +R L + A ++TN+++KN D+ +E L E F FG S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 223 ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
DE+G S+GFGFV+F+ +DA++A+ MNG K +Y RAQKK ER+ L+
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQTELKR 175
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 106/185 (57%), Gaps = 11/185 (5%)
Query: 196 KNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSV 255
KNLD + + L + FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG +
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 256 IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS 315
+ + ++ R + + ERE L + +E +NVY+KN +D+ DE LK F
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKE----------FTNVYIKNFGEDMDDERLKELFG 109
Query: 316 QCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
G S KVM DE G +KGFGFV F E+A KAV +G + K +YV AQ+K +R
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVER 169
Query: 376 QAHLQ 380
Q L+
Sbjct: 170 QTELK 174
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 91/170 (53%), Gaps = 8/170 (4%)
Query: 18 DLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77
+L + + L+D FS F ++ S +V D S YG+V+F + A RAIE N
Sbjct: 2 NLDKSJDNKALYDXFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 78 LHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
L+ + + + S R+ AR N+++KN E +D+ RL+E+F FG +S KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
T E GKSKG GFV FE E A A+ +NG K+IYV R KK +R
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVER 169
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 161/290 (55%), Gaps = 25/290 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F G++ S C+ A + +S G+ +V + A
Sbjct: 114 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNATADGEKA 171
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E+LN T + + I S R PA + T N+F+KNLD + + L + F+
Sbjct: 172 LEDLNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 224
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DENG S+G+GFV+++ + A A++ +NG ++ K +Y K +R+
Sbjct: 225 FGNILSCKVAQDENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQ 284
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+FEE +K +NVYVKNI +VTDEE + F++ G +TS+ + R ++G +
Sbjct: 285 S----KFEE------MKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKS 334
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
+GFGFV F++ E ASKAV +G + LYV AQ+K +R+ L+ Y
Sbjct: 335 RGFGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQKKHEREEELRRSY 384
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
+ AA SP QQKQILGE L+P ++ +P+L KITGMLLEM+N EL+ L+E +L KV
Sbjct: 712 LAAAASPAQQKQILGESLFPKIQAIQPELAGKITGMLLEMENQELINLIEDEAALNAKVG 771
Query: 599 EAVQV 603
EA+ V
Sbjct: 772 EAMNV 776
>gi|405963265|gb|EKC28854.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 172
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 107/169 (63%), Gaps = 2/169 (1%)
Query: 3 VVPPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
V P P SLYVGDLHPDVT+ L++ FS + S+RVC+ T RS Y YV+F
Sbjct: 5 VFPAGPIHPMTSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFK 64
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
DA A+ N+ + G+ +RI+W RDP RKSGV N+F+KNL +SIDN L + F
Sbjct: 65 HLEDAETALNTMNYDTIKGQPIRITWYQRDPSPRKSGVGNVFIKNLDKSIDNKALYDTFS 124
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170
FGNI+SCK+ E G +G+GFV FE EESA AIE +NGT + K++
Sbjct: 125 AFGNILSCKIVCDEHG-FRGYGFVHFEKEESATIAIERVNGTMLHGKKV 172
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 19/183 (10%)
Query: 182 VLPS-PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFD 239
V P+ P T+L++ +L DVTE+ L EKFS G + S+ + R S G+ +V+F
Sbjct: 5 VFPAGPIHPMTSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFK 64
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ +DA AL MN I + + Q+ RK + NV++K
Sbjct: 65 HLEDAETALNTMNYDTIKGQPIRITWYQRDPS-----------PRKSGV-----GNVFIK 108
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+D + ++ L FS G I S K++ DE G +G+GFV F E A+ A+ +G ML
Sbjct: 109 NLDKSIDNKALYDTFSAFGNILSCKIVCDEHGF-RGYGFVHFEKEESATIAIERVNGTML 167
Query: 360 HRK 362
H K
Sbjct: 168 HGK 170
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 13/167 (7%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANA 155
+ +L+V +L + L E F G ++S C+V + +S G+ +V F+ E A
Sbjct: 14 MTSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTR--RSLGYAYVDFKHLEDAET 71
Query: 156 AIENLNGTTVGDKRIYVGRFIKKSDRVLPSP-AAKYTNLFMKNLDSDVTEEHLVEKFSKF 214
A+ +N T+ + I + + + PSP + N+F+KNLD + + L + FS F
Sbjct: 72 ALNTMNYDTIKGQPIRITWYQRD-----PSPRKSGVGNVFIKNLDKSIDNKALYDTFSAF 126
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVI-GSKV 260
G I S I DE+G RG+GFV+F+ + A A+E +NG+++ G KV
Sbjct: 127 GNILSCKIVCDEHGF-RGYGFVHFEKEESATIAIERVNGTMLHGKKV 172
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 162/308 (52%), Gaps = 50/308 (16%)
Query: 284 RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS 343
+++RI +Y+G N+YVKN+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSS
Sbjct: 1 KQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSS 59
Query: 344 PEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI----- 398
PEEA+KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA + VI
Sbjct: 60 PEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQP 119
Query: 399 --PSGY-----P-----SLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP- 445
PSGY P + YY PP ++Q+ P P W A G RP
Sbjct: 120 APPSGYFMAAIPQTQNRAAYY--PPSQIAQLRPSP-----------RWTAQG----ARPH 162
Query: 446 AFQVSPLPVNPKHNRQNRGRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQS 501
FQ P + P R M + +P+V + S+Q+ ++
Sbjct: 163 PFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAV 222
Query: 502 KYVPNGRI--------RELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILG 553
+ VP + + LN V++ + V ++P + MLA+ P++QKQ+LG
Sbjct: 223 RTVPQYKYAAGVRNPQQHLNAQPQVTMQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLG 280
Query: 554 ERLYPLVE 561
ERL+PL++
Sbjct: 281 ERLFPLIQ 288
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 68/108 (62%), Gaps = 8/108 (7%)
Query: 178 KSDRVLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF 235
K DR+ +Y NL++KNLD + +E L ++FS FG I S + E G S+GFGF
Sbjct: 1 KQDRI-----TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGF 54
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
V F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 55 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 102
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 95 RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESAN 154
R GV NL+VKNL + ID+ RL++ F FG I S KV E G+SKG GFV F + E A
Sbjct: 7 RYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEAT 64
Query: 155 AAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
A+ +NG V K +YV +K +R A TN +M+ + S
Sbjct: 65 KAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMAS 105
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYV +L + D L FS F ++ S +V + GRS +G+V F SP +A +A+
Sbjct: 12 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 69
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL--IESIDN 113
N + K L ++ + R + R++ + N +++ + + ++ N
Sbjct: 70 MNGRIVATKPLYVALAQRK-EERQAHLTNQYMQRMASVRAVPN 111
>gi|269859758|ref|XP_002649603.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
gi|220066966|gb|EED44435.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
Length = 484
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 196/399 (49%), Gaps = 39/399 (9%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGD+ + T EL + F K L + T + +V F S + A A++
Sbjct: 23 IHVGDISLNTTANELKEVF---KGLNVTNIIMKKTLNGQYAFAFVKFDSANAAQEAVQKY 79
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N+T L+GK + ++ S D + S AN+FV N+ + L+E+F+NFG ++SCK++
Sbjct: 80 NYTMLNGKEILLTIS--DTQFKYSQSANIFVNNIPTDMSAKDLEEIFKNFGPVLSCKISR 137
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI-KKSDRVLPSPAAKYTN 192
+ +GKSKG+G+V ++ +SA A+ N + + ++V + +KS R S +TN
Sbjct: 138 TSEGKSKGYGYVMYKNLKSAKKAVTNCQNVKINENILFVDFYNPQKSAR--NSENKAFTN 195
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
F KN + TE L K+G+I ++ +G GF VN+ +P+ A RA++ ++
Sbjct: 196 CFCKNFPPNYTEAELKNLLKKYGEITTIYFPTKSDGKPVGFACVNYAHPESAVRAIDELH 255
Query: 253 GSVI------------GSKVLYAARAQKKAEREQILRH------QFEEKRKERILKYKGS 294
I + Y + +KK EREQIL+ F K K
Sbjct: 256 NKQIFNNNQMQKDTKFAIEPFYIQKNEKKKEREQILKSFYGNSVGFRNKLKR-------- 307
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
N++++N+ +++EL + G IT K+ D K FG+VC+S+ EEA+ A+
Sbjct: 308 NLFIQNVPTSFSEDELLEILKKFGNITDFKLKLDTLHPEKQFGYVCYSTIEEAAVALEKS 367
Query: 355 HGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGS 393
+L L ++I + K +R + ++ +EGS
Sbjct: 368 KQVLLDGNQLELSIYKSKYERSTE-----SSYIMKLEGS 401
>gi|303391122|ref|XP_003073791.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
gi|303302939|gb|ADM12431.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
Length = 410
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 169/328 (51%), Gaps = 26/328 (7%)
Query: 93 DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEES 152
D R N+FVKNL E+ + L + F FG I SCKVAT+ GKSKG+GFVQF+ +++
Sbjct: 4 DERPPETGNIFVKNLPENFTSKDLDDAFSMFGEITSCKVATTSHGKSKGYGFVQFKEKKA 63
Query: 153 ANAAIE---NLNGTTVGDKRIYVGRF---IKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
A I+ NLNG +G+ +I V + +KK + +TN F+KN DV EE+
Sbjct: 64 AKKVIKNFNNLNGLMLGENKIVVELYNPEMKKGEN--KKTPTMFTNCFIKNFPVDVEEEN 121
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN-----GSVIGSKVL 261
L E K+GK+ SL E+G +GF F NF++ + A A++ ++ G +
Sbjct: 122 LRELLEKYGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNLHETFPFGDGESGEPF 181
Query: 262 YAARAQKKAEREQILRHQFEEKRKERILKYKG----SNVYVKNIDDDVTDEELKAHFSQC 317
Y + Q+K ER + LR FE+ L +G N+Y+ NI + EEL F +
Sbjct: 182 YIQKGQRKEERAEELRKTFEQ------LSMQGQSYKKNLYITNIPEGFGAEELNNIFREF 235
Query: 318 GTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
G ITS V D K + +VC+S+PEEAS AV + L L VA + K +R
Sbjct: 236 GNITSMSVGTDGANSQKQYAYVCYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLERMK 295
Query: 378 HLQ---LQYAQHMAGIEGSSANVIPSGY 402
+ + Y ++ + N +P+G+
Sbjct: 296 EKEFGSIGYKPNIPYMYNQGVNFVPNGF 323
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys terrapin]
Length = 175
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 117/176 (66%), Gaps = 3/176 (1%)
Query: 105 KNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTT 164
KNL +SIDN L + F FGNI+SCKV E+G SKG+GFV FET+E+A AIE +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 165 VGDKRIYVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222
+ D++++VGRF + +R L + A ++TN+++KN D+ +E L E F S+ +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKV 119
Query: 223 ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRH 278
DE+G S+GFGFV+F+ +DA++A++ MNG + K +Y RAQKK ER+ L+
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 175
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 107/185 (57%), Gaps = 11/185 (5%)
Query: 196 KNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSV 255
KNLD + + L + FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 256 IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS 315
+ + ++ R + + ERE L + +E +NVY+KN +D+ DE LK F
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFG 109
Query: 316 QCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
S KVM DE G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +R
Sbjct: 110 XXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 376 QAHLQ 380
Q L+
Sbjct: 170 QTELK 174
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Query: 18 DLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77
+L + + L+D FS F ++ S +V D S YG+V+F + A RAIE N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 78 LHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
L+ + + + S R+ + AR N+++KN E +D+ RL+E+F +S KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKV 119
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
T E GKSKG GFV FE E A A++ +NG + K+IYVGR KK +R
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
>gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 154 bits (390), Expect = 1e-34, Method: Composition-based stats.
Identities = 76/152 (50%), Positives = 104/152 (68%), Gaps = 3/152 (1%)
Query: 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQ 146
WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV E+G SKG+GFV
Sbjct: 2 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVH 60
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAKYTNLFMKNLDSDVTE 204
FET E+A AIE +NG + D++++VGRF + +R + + A ++TN+++KN D+ +
Sbjct: 61 FETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMED 120
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
E L E FSKFG S+ + D+ G SR FGFV
Sbjct: 121 EKLREIFSKFGPALSIRVMTDDGGKSRSFGFV 152
Score = 109 bits (273), Expect = 4e-21, Method: Composition-based stats.
Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 11/150 (7%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+F+KNLD + + L + FS FG I S + DENG S+G+GFV+F+ + A RA+E M
Sbjct: 16 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 74
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG ++ + ++ R + + ERE + + +E +NVY+KN +D+ DE+L+
Sbjct: 75 NGMLLNDRKVFVGRFKSRKEREAEMGARAKEF----------TNVYIKNFGEDMEDEKLR 124
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCF 341
FS+ G S +VM D+ G ++ FGFVC
Sbjct: 125 EIFSKFGPALSIRVMTDDGGKSRSFGFVCL 154
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++++ +L + + L+D FS F ++ S +V D + YG+V+F + A RAIE
Sbjct: 15 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETHEAAERAIE 72
Query: 72 VKNHTQLHGKMLRI----SWSCRDPD--ARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
N L+ + + + S R+ + AR N+++KN E +++ +L+E+F FG
Sbjct: 73 KMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMEDEKLREIFSKFGP 132
Query: 126 IISCKVATSEDGKSKGHGFV 145
+S +V T + GKS+ GFV
Sbjct: 133 ALSIRVMTDDGGKSRSFGFV 152
Score = 62.0 bits (149), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 283 KRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFS 342
+R + K N+++KN+D + ++ L FS G I S KV+ DE G +KG+GFV F
Sbjct: 4 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 343 SPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379
+ E A +A+ +G +L+ + ++V + +++R+A +
Sbjct: 63 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEM 99
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 158/291 (54%), Gaps = 25/291 (8%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAAI 157
+L+V L + L E+F G + S C+ A + +S G+ +V + A+
Sbjct: 75 SLYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTR--RSLGYAYVNYLNYNDGERAL 132
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKF 214
+ LN + + K I S R P + T N+F+KNLD + + L + F+ F
Sbjct: 133 DQLNYSQIRGKPCR----IMWSQR---DPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAF 185
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
G + S +A D++G S+G+GFV++D+ + A A++A+NG ++ K ++ + + ER+
Sbjct: 186 GTVLSCKVATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQS 245
Query: 275 ILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK 334
+ +K +N+YVKN+D +V +EE + FSQ G ITSA + +DE+G +K
Sbjct: 246 KIDE----------MKSHFTNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSK 295
Query: 335 GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
GFGFV F + E+A +AV +H KP++V AQ+K +R+ L+ QY Q
Sbjct: 296 GFGFVNFENHEDAQRAVEELDNKEIHGKPVFVGRAQKKSEREEELRKQYEQ 346
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 547 QQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605
+QKQILGE +Y + +P+L KITGMLLEM+ +EL+ L+E+P++L KV EA+ VL+
Sbjct: 645 EQKQILGEAIYMKIHAMQPELAGKITGMLLEMETTELIHLIETPDALQNKVAEAITVLE 703
>gi|405946351|gb|EKC17616.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 199
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 108/152 (71%)
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNV 296
+F++P+ A +A+EA+NG+ K++Y QK+ ER+ L+ +F+ R ERI +Y+G N+
Sbjct: 3 SFEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNL 62
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
YVKN+ D++ D L+ F+Q GTITSAKVM E G +KGFGFVCF SPEEA+KA+ +
Sbjct: 63 YVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNE 122
Query: 357 YMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMA 388
++ +PLYVA+AQ+K+DR+A L QY Q +
Sbjct: 123 KLIEARPLYVALAQKKQDRKAQLASQYMQRTS 154
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 111/196 (56%), Gaps = 16/196 (8%)
Query: 147 FETEESANAAIENLNGTTVGDKRIYV----------GRFIKKSDRVLPSPAAKY--TNLF 194
FE E+A A+E LNG K IYV +K R+ +Y NL+
Sbjct: 4 FEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNLY 63
Query: 195 MKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
+KNL ++ + L ++F++FG I S + E+G S+GFGFV F +P++A +A+ MN
Sbjct: 64 VKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNEK 123
Query: 255 VIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYK----GSNVYVKNIDDDVTDEEL 310
+I ++ LY A AQKK +R+ L Q+ ++ R + G N+++KN+D + DE+L
Sbjct: 124 LIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFIKNLDKSIDDEKL 183
Query: 311 KAHFSQCGTITSAKVM 326
+ FSQ GTITSAKV+
Sbjct: 184 REEFSQFGTITSAKVV 199
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 90/165 (54%), Gaps = 20/165 (12%)
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
E++ +L K RI + R GV NL+VKNL ++ID+VRL++ F FG I S K
Sbjct: 35 EIERQAELKEKFQRIRM---ERINRYQGV-NLYVKNLADNIDDVRLRKEFAQFGTITSAK 90
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAA 188
V T+EDG+SKG GFV F + E A AI +N + + +YV KK DR L S
Sbjct: 91 VMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNEKLIEARPLYVALAQKKQDRKAQLASQYM 150
Query: 189 KYT--------------NLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
+ T NLF+KNLD + +E L E+FS+FG I S
Sbjct: 151 QRTSSRDMPEHRIGPGVNLFIKNLDKSIDDEKLREEFSQFGTITS 195
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 23/140 (16%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYV +L ++ D L F++F ++ S +V + GRS +G+V F SP +A +AI
Sbjct: 61 NLYVKNLADNIDDVRLRKEFAQFGTITSAKVMT-TEDGRSKGFGFVCFRSPEEAAKAIVE 119
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVA---------------------NLFVKNLIESI 111
N + + L ++ + + D RK+ +A NLF+KNL +SI
Sbjct: 120 MNEKLIEARPLYVALAQKKQD-RKAQLASQYMQRTSSRDMPEHRIGPGVNLFIKNLDKSI 178
Query: 112 DNVRLQEMFQNFGNIISCKV 131
D+ +L+E F FG I S KV
Sbjct: 179 DDEKLREEFSQFGTITSAKV 198
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 158/288 (54%), Gaps = 21/288 (7%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158
A+L+V L S+ L E+F G++ S +V +S G+ +V + + A+E
Sbjct: 65 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALE 124
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSKFG 215
LN T + + I S R PA + T N+F+KNLD + + L + F+ FG
Sbjct: 125 ELNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG 177
Query: 216 KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI 275
I S +A+DENG S+G+GFV+++ + A +A++ +N ++ K +Y K +R+
Sbjct: 178 NILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQ-- 235
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG 335
+FEE +K +N+YVKNI + TDEE + F++ G +TS+ + RD +G ++G
Sbjct: 236 --SKFEE------MKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRG 287
Query: 336 FGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
FGFV F++ E A+KAV +G + LYV AQ+K +R+ L+ Y
Sbjct: 288 FGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSY 335
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 55/83 (66%)
Query: 521 GTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDN 580
G +GG + + + + A +P+QQKQILGE L+P ++ +PDL KITGMLLEMDN
Sbjct: 665 GPLAAGGELNASSLLQSQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDN 724
Query: 581 SELLLLLESPESLAVKVEEAVQV 603
+EL+ LLE +L KV EA+ V
Sbjct: 725 AELVNLLEDEAALVAKVNEAMAV 747
>gi|294875884|ref|XP_002767464.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
gi|239869099|gb|EER00182.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
Length = 230
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
Query: 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQ 146
WS RDP R+SG N++VKNL +IDN L + F FGNI+SCKVA + DGKS+G GFV
Sbjct: 2 WSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVH 61
Query: 147 FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206
FE++ESA AAI LNG +G+K +YV F K ++R +P +TN+++K++ + EE
Sbjct: 62 FESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTP-KNFTNVYIKHIPASWNEEK 120
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG 253
+ E+F FG+I SL + D G R F FVN+ + AR A+E M+G
Sbjct: 121 IKEEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDG 165
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 87/165 (52%), Gaps = 15/165 (9%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNLD ++ + L + FS FG I S +A +G SRGFGFV+F++ + A A+ +
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG IG K +Y A +K AER F +NVY+K+I +E++K
Sbjct: 76 NGMQIGEKTVYVAPFKKTAERNDGTPKNF-------------TNVYIKHIPASWNEEKIK 122
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356
F G ITS V D KG + F FV ++ E+A AV G
Sbjct: 123 EEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDG 165
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 6/156 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++YV +L ++ + L+D FS F ++ S +V + G+S +G+V+F S A AI
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL-TPDGKSRGFGFVHFESDESAEAAIAK 74
Query: 73 KNHTQLHGKMLRIS---WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
N Q+ K + ++ + D N+++K++ S + +++E F FG I S
Sbjct: 75 LNGMQIGEKTVYVAPFKKTAERNDGTPKNFTNVYIKHIPASWNEEKIKEEFGAFGEITSL 134
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV 165
V T D K + FV + E A AA+E ++G V
Sbjct: 135 AVQT--DPKGRRFAFVNYAEFEQARAAVEEMDGKDV 168
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
NVYVKN+D ++ ++ L FS G I S KV G ++GFGFV F S E A A+
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 355 HGYMLHRKPLYVA----IAQRKEDRQAHLQLQYAQHM 387
+G + K +YVA A+R + + Y +H+
Sbjct: 76 NGMQIGEKTVYVAPFKKTAERNDGTPKNFTNVYIKHI 112
>gi|444732122|gb|ELW72434.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 291
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 166/341 (48%), Gaps = 64/341 (18%)
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG 335
L+ +FE+ +++RI +Y+G N+YVKN+DD + D L+ FS GTITSAKVM E G +KG
Sbjct: 3 LKCKFEQMKQDRITRYQGVNLYVKNLDDGIDDASLRKEFSPFGTITSAKVMM-EGGCSKG 61
Query: 336 FGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSA 395
FGF CFS PEEA+KAV +G ++ KP V
Sbjct: 62 FGFGCFSFPEEATKAVTEMNGRIVATKPFIV----------------------------- 92
Query: 396 NVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVN 455
+ YY PP ++Q+ P P W A G P T FQ P +
Sbjct: 93 ----RSFSPAYY--PPSQIAQLRPSP-----------HWTAQGARPHT---FQNMPGAIR 132
Query: 456 PKHNRQNRGRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI-- 509
R M + +P+V + S+Q+ ++ + +P +
Sbjct: 133 LATPRPPFSTMRPASSQVPRVMSTQRVANTSTQTIGPPPAAAAATATPAVRTIPQYKYAA 192
Query: 510 ------RELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKH 563
+ LN V++ + V ++P + + +AP P++QKQ+LGE L+PL++
Sbjct: 193 GVRNPQQHLNAQPQVTMQQ-PAVHVQGQEPLTASMLASAP-PQEQKQMLGEWLFPLIQAM 250
Query: 564 KPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
P L KITGML E+DNSELL +LESPESL K +EAV VL
Sbjct: 251 HPTLAGKITGMLFEIDNSELLHMLESPESLRSKDDEAVAVL 291
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 8/84 (9%)
Query: 178 KSDRVLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF 235
K DR+ +Y NL++KNLD + + L ++FS FG I S + E G S+GFGF
Sbjct: 11 KQDRI-----TRYQGVNLYVKNLDDGIDDASLRKEFSPFGTITSAKVMM-EGGCSKGFGF 64
Query: 236 VNFDNPDDARRALEAMNGSVIGSK 259
F P++A +A+ MNG ++ +K
Sbjct: 65 GCFSFPEEATKAVTEMNGRIVATK 88
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFET 149
+D R GV NL+VKNL + ID+ L++ F FG I S KV E G SKG GF F
Sbjct: 12 QDRITRYQGV-NLYVKNLDDGIDDASLRKEFSPFGTITSAKVMM-EGGCSKGFGFGCFSF 69
Query: 150 EESANAAIENLNGTTVGDKRIYVGRF 175
E A A+ +NG V K V F
Sbjct: 70 PEEATKAVTEMNGRIVATKPFIVRSF 95
>gi|47198027|emb|CAF89020.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 171 YVGRFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG 228
+VG F + +R L S A K+TN+++KN D T+E L E FS FG+ S+ + +DE G
Sbjct: 1 FVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERG 60
Query: 229 TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
SRGFGFVNF + DA++A++ MNG+ + KV+Y RAQK+ ER+ L+ +FE +++RI
Sbjct: 61 RSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRI 120
Query: 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
+Y+G N+YVKN+DD + DE L+ F+ GTITSAKV
Sbjct: 121 QRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKV 157
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 277 RHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF 336
R + EE+ + LK+ +NVY+KN +D TDE+LK FS G S +VM+DE+G ++GF
Sbjct: 8 RKEREEELGSKALKF--TNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGF 65
Query: 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
GFV F+ +A KAV+ +G L+ K +YV AQ++ +RQ L+ ++
Sbjct: 66 GFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKF 112
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 12/134 (8%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
N+++KN E + +L+E+F FG +S +V E G+S+G GFV F A A++ +
Sbjct: 24 NVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEM 83
Query: 161 NGTTVGDKRIYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSDVTEEHLV 208
NGT + K IYVGR K+ +R + +Y NL++KNLD + +E L
Sbjct: 84 NGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDGIDDERLR 143
Query: 209 EKFSKFGKIASLLI 222
++F+ +G I S +
Sbjct: 144 KEFAPYGTITSAKV 157
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 19/136 (13%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++Y+ + D TD +L + FS F SVRV KD GRS +G+VNF DA +A++
Sbjct: 24 NVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDER-GRSRGFGFVNFAHHGDAQKAVDE 82
Query: 73 KNHTQLHGKMLRISWSCR-----------------DPDARKSGVANLFVKNLIESIDNVR 115
N T+L+GK++ + + + D R GV NL+VKNL + ID+ R
Sbjct: 83 MNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGV-NLYVKNLDDGIDDER 141
Query: 116 LQEMFQNFGNIISCKV 131
L++ F +G I S KV
Sbjct: 142 LRKEFAPYGTITSAKV 157
>gi|296235783|ref|XP_002763047.1| PREDICTED: uncharacterized protein LOC100399785, partial
[Callithrix jacchus]
Length = 445
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP+VT+ L++ FS + S+R+C+D T RS Y YVN+ P DA RA+E
Sbjct: 310 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 369
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ++IDN L +F FGNI+SCKV
Sbjct: 370 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 429
Query: 132 ATSEDGKSKGHGFVQFE 148
A E G KG+GFV F+
Sbjct: 430 ACDEKGP-KGYGFVHFQ 445
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 81/158 (51%), Gaps = 18/158 (11%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P +L++ +L +VTE L EKFS G I S+ I RD+ S G+ +VN+ P D
Sbjct: 304 NPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVD 363
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A+RALE +N VI K +I+ Q R + K NV++KN+
Sbjct: 364 AKRALETLNFDVI------------KGRPVRIMWSQ----RDPSLRKSGVGNVFIKNLGK 407
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCF 341
+ ++ L FS G I S KV DEKG KG+GFV F
Sbjct: 408 TIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHF 444
>gi|320581035|gb|EFW95257.1| polyadenylate-binding protein [Ogataea parapolymorpha DL-1]
Length = 541
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 181/379 (47%), Gaps = 65/379 (17%)
Query: 62 SPHDAIRAIEVKNHTQ-----LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRL 116
SP E K+H + L + + + + +K NL+V+ L+ + + L
Sbjct: 52 SPKTVFARFEEKDHFEKFKEFLEQRDIEYEHVATEHELKKQLPGNLYVRGLLPTTTSDDL 111
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
+F +G ++SCK+ + G SKG+GF+ F A AI+NLNG V ++V I
Sbjct: 112 VRIFSRYGALVSCKIIYDDFGVSKGYGFINFADRIEAQKAIDNLNGVNVDGNHLFVNHHI 171
Query: 177 KKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
K DR+ L KYTNL++KN D+T+E L + F ++G + S+ + + +RG+
Sbjct: 172 SKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVFGQYGDVESVFLPQGTGNHNRGYA 231
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKV-LYAARAQKKAEREQ-----------ILRHQFEE 282
F+NF + +DA RA E ++G I L +A+++ +R Q + Q+
Sbjct: 232 FINFKSHEDAVRAQENLDGFEIAPGYRLQLGKAERRKDRMQNQMNSYKPNYLPFQPQYMP 291
Query: 283 KRKER--------IL------------------KYKGSNVYVKNIDDDVTDEELKAHFSQ 316
+ E I+ +Y+ SN+Y+ ++ + D++L F+
Sbjct: 292 PQPEHSNNLYPSFIVSPDSNLISTATGLPIAGPQYQDSNLYIIHLPLEFKDQDLYELFAP 351
Query: 317 CGTITSAKVM-------------------RDEKGINKGFGFVCFSSPEEASKAVNTFHGY 357
G I SAK+M + +G ++GFGFVCF+ P +ASKA+ + +GY
Sbjct: 352 FGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGRSRGFGFVCFNKPLDASKALVSMNGY 411
Query: 358 ML-HRKPLYVAIAQRKEDR 375
+ L V+ AQRKE++
Sbjct: 412 RVDDSHVLEVSFAQRKENK 430
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 155/362 (42%), Gaps = 78/362 (21%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYV L P T +L FS + +L S ++ D G S YG++NF +A +AI
Sbjct: 94 PGNLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDDF-GVSKGYGFINFADRIEAQKAI 152
Query: 71 EVKNHTQLHGKMLRISW--SCRDP----DARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
+ N + G L ++ S RD + RK NL+VKN + + +L ++F +G
Sbjct: 153 DNLNGVNVDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVFGQYG 212
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG-DKRIYVGRFIKKSDRV- 182
++ S + ++G+ F+ F++ E A A ENL+G + R+ +G+ ++ DR+
Sbjct: 213 DVESVFLPQGTGNHNRGYAFINFKSHEDAVRAQENLDGFEIAPGYRLQLGKAERRKDRMQ 272
Query: 183 ----------------------------------------------LPSPAAKY--TNLF 194
LP +Y +NL+
Sbjct: 273 NQMNSYKPNYLPFQPQYMPPQPEHSNNLYPSFIVSPDSNLISTATGLPIAGPQYQDSNLY 332
Query: 195 MKNLDSDVTEEHLVEKFSKFGKIASLLI-------------------ARDENGTSRGFGF 235
+ +L + ++ L E F+ FG+I S I ++ G SRGFGF
Sbjct: 333 IIHLPLEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGRSRGFGF 392
Query: 236 VNFDNPDDARRALEAMNG-SVIGSKVLYAARAQKKAER-EQILRHQFEEKRKERILKYKG 293
V F+ P DA +AL +MNG V S VL + AQ+K + E+ H + + Y
Sbjct: 393 VCFNKPLDASKALVSMNGYRVDDSHVLEVSFAQRKENKFEKGRLHHYNQNHLGNFYNYLN 452
Query: 294 SN 295
N
Sbjct: 453 QN 454
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 143/298 (47%), Gaps = 35/298 (11%)
Query: 116 LQEMFQNFGNI--ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG 173
L +F+N N ++C+V + +S F +FE ++ E L + + +
Sbjct: 28 LLAVFKNTYNYPEVNCEVLKG-NSESPKTVFARFEEKDHFEKFKEFLEQRDIEYEHVATE 86
Query: 174 RFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
+KK LP NL+++ L T + LV FS++G + S I D+ G S+G+
Sbjct: 87 HELKKQ---LPG------NLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDDFGVSKGY 137
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
GF+NF + +A++A++ +NG + L+ K +R + L E RK LKY
Sbjct: 138 GFINFADRIEAQKAIDNLNGVNVDGNHLFVNHHISKRDRLKEL-----EMRK---LKY-- 187
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
+N+YVKN DD+T E+L F Q G + S + + N+G+ F+ F S E+A +A
Sbjct: 188 TNLYVKNFPDDLTKEKLAQVFGQYGDVESVFLPQGTGNHNRGYAFINFKSHEDAVRAQEN 247
Query: 354 FHGYML---HRKPLYVAIAQRKEDRQAHLQLQYA--------QHMAGIEGSSANVIPS 400
G+ + +R L + A+R++DR + Y Q+M S N+ PS
Sbjct: 248 LDGFEIAPGYR--LQLGKAERRKDRMQNQMNSYKPNYLPFQPQYMPPQPEHSNNLYPS 303
>gi|294879376|ref|XP_002768666.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239871376|gb|EER01384.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 342
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 129/242 (53%), Gaps = 44/242 (18%)
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++K++ TEE + E+F FG+I S + D G R F FVNF + AR A+E
Sbjct: 4 FTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKG--RRFAFVNFAEFEQARAAVE 61
Query: 250 AMNGSVI---------------------------GSKV------------LYAARAQKKA 270
M+G + G +V LY ARAQ KA
Sbjct: 62 DMDGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKA 121
Query: 271 EREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK 330
ER +L+ QF + + ++ G N+YVKN+ + V D ELK F GTITS KVM D+K
Sbjct: 122 ERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDK 181
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY---AQHM 387
G+++GFGFVCFS+ EEA+KAV H ++ KPLYV + +++E R LQ +Y QH
Sbjct: 182 GVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRYRAPPQHE 241
Query: 388 AG 389
G
Sbjct: 242 MG 243
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 53/231 (22%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
N+++K++ S +++E F FG I S + T D K + FV F E A AA+E++
Sbjct: 6 NVYIKHIPPSWTEEKIREEFGAFGEITSFAMQT--DPKGRRFAFVNFAEFEQARAAVEDM 63
Query: 161 NGTTV---------------------------GDK------------RIYVGRFIKKSDR 181
+G V GD+ R+YV R K++R
Sbjct: 64 DGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKAER 123
Query: 182 --VLPSPAAKY----------TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGT 229
VL A NL++KNL V + L F FG I S+ + D+ G
Sbjct: 124 AAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGV 183
Query: 230 SRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
SRGFGFV F ++A +A+ M+ +IG K LY +K+ +R + L+ ++
Sbjct: 184 SRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 234
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAI 157
G NL+VKNL E++D+ L+ MF+ FG I S KV T + G S+G GFV F T E A A+
Sbjct: 143 GGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAV 202
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRV 182
+++ +G K +YVG K+ R+
Sbjct: 203 TDMHLKLIGGKPLYVGMHEKREQRL 227
>gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa]
Length = 183
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 111/174 (63%), Gaps = 8/174 (4%)
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A++ +NG K Y RAQKK+ RE L+ +FE+ +E KY+ +N+Y+KN+DD V
Sbjct: 1 QAVQELNGKKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSV 60
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
D++L+ F++ GTITS KVMRD G+++G GFV F S E+AS+A+ + M+ KPLY
Sbjct: 61 DDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLY 120
Query: 366 VAIAQRKEDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYP----SLYYTTPP 411
VA+AQRKEDR+A LQ Q++Q +A G + P G P L+Y PP
Sbjct: 121 VALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPP 174
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 83/141 (58%), Gaps = 12/141 (8%)
Query: 156 AIENLNGTTVGDKRIYVGRFIKKSDRV----------LPSPAAKY--TNLFMKNLDSDVT 203
A++ LNG DK YVGR KKS R L A KY TNL++KNLD V
Sbjct: 2 AVQELNGKKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVD 61
Query: 204 EEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYA 263
++ L E F+++G I S + RD NG SRG GFV F + +DA RAL MN ++GSK LY
Sbjct: 62 DDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYV 121
Query: 264 ARAQKKAEREQILRHQFEEKR 284
A AQ+K +R+ L+ QF + R
Sbjct: 122 ALAQRKEDRKARLQAQFSQLR 142
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
NL++KNL +S+D+ +L+E+F +G I SCKV +G S+G GFV F++ E A+ A+ +
Sbjct: 50 NLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEM 109
Query: 161 NGTTVGDKRIYVGRFIKKSDR 181
N VG K +YV +K DR
Sbjct: 110 NSKMVGSKPLYVALAQRKEDR 130
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LY+ +L V D +L + F+E+ ++ S +V +DS G S G+V F S DA RA+
Sbjct: 50 NLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDS-NGVSRGSGFVAFKSAEDASRALAE 108
Query: 73 KNHTQLHGKMLRISWSCRDPDAR 95
N + K L ++ + R D +
Sbjct: 109 MNSKMVGSKPLYVALAQRKEDRK 131
>gi|183230986|ref|XP_655191.2| polyadenylate-binding protein [Entamoeba histolytica HM-1:IMSS]
gi|169802669|gb|EAL49805.2| polyadenylate-binding protein, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449705618|gb|EMD45631.1| polyadenylate-binding protein, putative [Entamoeba histolytica
KU27]
Length = 524
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 178/353 (50%), Gaps = 28/353 (7%)
Query: 13 SLYVGDLHPDVTDGELF-DAFSEF-KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
+++V +L VT+ LF + F +F +++V + +DS T Y+N S A++AI
Sbjct: 20 TIFVNNLPTSVTETVLFAEVFKDFPNQVSNVHINRDSRF--DTTIAYINMNSHEAALQAI 77
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
+ N T + GK + + WS RD R NL+VK + +S+ +LQE+F+ +G+ +S K
Sbjct: 78 KKLNGTLIEGKKVNMFWSLRDFKQRTQNETNLYVKYIKKSVTQQKLQEVFEKYGHTLSVK 137
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLN--GTTVGDKRIYVGRFIKKSDRVLPSPAA 188
++++E +S G G+V++ T E AA++ + +GD+ + +F K+ P
Sbjct: 138 LSSNEKNESNGFGYVKYCTVEECQAAVDARDEIAKEIGDEGFLIAKFCKQ-------PKN 190
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS-------LLIARDENGTSRGFGFVNFDNP 241
TNL++ N+D VTEE ++ F FG I DE + GFVN++N
Sbjct: 191 LKTNLYIGNIDKTVTEEQFLKYFETFGPIKCGADGKKFYRFLYDEK-YEKNKGFVNYENT 249
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A+ A V+G + + K ER+Q + E + KYK N +VK
Sbjct: 250 EDAQKAVTAPRHCVLGDSDILVTYYKTKKERKQEFKQHANEIKMNATGKYKEYNFHVKTD 309
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEASKAV 351
+T+ E++ CG I S K+ K +N ++CF + + A + +
Sbjct: 310 KAGITEGEIRDALQDCGGIYSIKI----KYVNSEPTDVVYICFDNAQSAHQFI 358
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 134/545 (24%), Positives = 229/545 (42%), Gaps = 93/545 (17%)
Query: 102 LFVKNLIESI-DNVRLQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFETEESANAAIEN 159
+FV NL S+ + V E+F++F N +S V + D + ++ + E+A AI+
Sbjct: 21 IFVNNLPTSVTETVLFAEVFKDFPNQVS-NVHINRDSRFDTTIAYINMNSHEAALQAIKK 79
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNGT + K+ V F S R TNL++K + VT++ L E F K+G S
Sbjct: 80 LNGTLIEGKK--VNMFW--SLRDFKQRTQNETNLYVKYIKKSVTQQKLQEVFEKYGHTLS 135
Query: 220 LLIARDENGTSRGFGFVNFDNPDDARRALEAMN--GSVIGSKVLYAARAQKKAEREQILR 277
+ ++ +E S GFG+V + ++ + A++A + IG + A+ K+ +
Sbjct: 136 VKLSSNEKNESNGFGYVKYCTVEECQAAVDARDEIAKEIGDEGFLIAKFCKQPKN----- 190
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSA-------KVMRDEK 330
LK +N+Y+ NID VT+E+ +F G I + + DEK
Sbjct: 191 -----------LK---TNLYIGNIDKTVTEEQFLKYFETFGPIKCGADGKKFYRFLYDEK 236
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
K GFV + + E+A KAV +L + V + K++R+ ++ QH I
Sbjct: 237 -YEKNKGFVNYENTEDAQKAVTAPRHCVLGDSDILVTYYKTKKERKQ----EFKQHANEI 291
Query: 391 EGSSANVIPSGYPSLYYTTPPGI-------------------VSQVPPRP-GLMYQPLGL 430
+ ++ Y T GI + V P ++Y +
Sbjct: 292 KMNATGKYKE-YNFHVKTDKAGITEGEIRDALQDCGGIYSIKIKYVNSEPTDVVY--ICF 348
Query: 431 RTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGR----MNGNMLPQVGAHYMQQSSQSA 486
A+ F+ QV NP +Q R NG +P +++Q
Sbjct: 349 DNAQSAHQFIQKA----QVLGWTANPFKTKQERSNANNYYNGTGIPGFPVNFLQYFQLFP 404
Query: 487 ASSKDSSNQQ-KGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPS- 544
+ S N+Q K G + + K S V + ++P + AP+
Sbjct: 405 SVFNTSMNRQPKPGNKQPRNVSASQNAKKKSKVD-------NNIKKQPKSIE---KAPTV 454
Query: 545 PEQQKQILGERLYPLV---EKHKPDLVAKITGMLLE-MDNSELLLLLESPESLAVKVEEA 600
E+ K LG++LY + E + ++ +ITG+LLE ++ SEL +L + K+EE
Sbjct: 455 TEEMKNNLGDQLYDFILGLEDYDEEITGRITGVLLESIEYSELNNMLRN------KIEEL 508
Query: 601 VQVLK 605
V+K
Sbjct: 509 KNVIK 513
>gi|407035071|gb|EKE37514.1| polyadenylate-binding protein, putative [Entamoeba nuttalli P19]
Length = 524
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 178/353 (50%), Gaps = 28/353 (7%)
Query: 13 SLYVGDLHPDVTDGELF-DAFSEF-KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
+++V +L VT+ LF + F +F +++V + +DS T Y+N S A++AI
Sbjct: 20 TIFVNNLPTSVTETVLFAEVFKDFPNQVSNVHINRDSRF--DTTIAYINMNSHEAALQAI 77
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
+ N T + GK + + WS RD R NL+VK + +S+ +LQE+F+ +G+ +S K
Sbjct: 78 KKLNGTLIEGKKVNMFWSLRDFKQRTQNETNLYVKYIKKSVTQQKLQEVFEKYGHTLSVK 137
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLN--GTTVGDKRIYVGRFIKKSDRVLPSPAA 188
++++E +S G G+V++ T E AA++ + +GD+ + +F K+ P
Sbjct: 138 LSSNEKNESNGFGYVKYCTVEECQAAVDARDEIAKEIGDEGFLIAKFCKQ-------PKN 190
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS-------LLIARDENGTSRGFGFVNFDNP 241
TNL++ N+D VTEE ++ F FG I DE + GFVN++N
Sbjct: 191 LKTNLYIGNIDKTVTEEQFLKYFETFGPIKCGADGKKFYRFLYDEK-YEKNKGFVNYENT 249
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A+ A V+G + + K ER+Q + E + KYK N +VK
Sbjct: 250 EDAQKAVTAPRHCVLGDSDILVTYYKTKKERKQEFKQHANEIKMNATGKYKEYNFHVKTD 309
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEASKAV 351
+T+ E++ CG I S K+ K +N ++CF + + A + +
Sbjct: 310 KAGITEGEIRDALQDCGGIYSIKI----KYVNSEPTDVVYICFDNAQSAHQFI 358
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 132/544 (24%), Positives = 226/544 (41%), Gaps = 91/544 (16%)
Query: 102 LFVKNLIESI-DNVRLQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFETEESANAAIEN 159
+FV NL S+ + V E+F++F N +S V + D + ++ + E+A AI+
Sbjct: 21 IFVNNLPTSVTETVLFAEVFKDFPNQVS-NVHINRDSRFDTTIAYINMNSHEAALQAIKK 79
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNGT + K+ V F S R TNL++K + VT++ L E F K+G S
Sbjct: 80 LNGTLIEGKK--VNMFW--SLRDFKQRTQNETNLYVKYIKKSVTQQKLQEVFEKYGHTLS 135
Query: 220 LLIARDENGTSRGFGFVNFDNPDDARRALEAMN--GSVIGSKVLYAARAQKKAEREQILR 277
+ ++ +E S GFG+V + ++ + A++A + IG + A+ K+ +
Sbjct: 136 VKLSSNEKNESNGFGYVKYCTVEECQAAVDARDEIAKEIGDEGFLIAKFCKQPKN----- 190
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSA-------KVMRDEK 330
LK +N+Y+ NID VT+E+ +F G I + + DEK
Sbjct: 191 -----------LK---TNLYIGNIDKTVTEEQFLKYFETFGPIKCGADGKKFYRFLYDEK 236
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
K GFV + + E+A KAV +L + V + K++R+ ++ QH I
Sbjct: 237 -YEKNKGFVNYENTEDAQKAVTAPRHCVLGDSDILVTYYKTKKERKQ----EFKQHANEI 291
Query: 391 EGSSANVIPSGYPSLYYTTPPGI-------------------VSQVPPRP-GLMYQPLGL 430
+ ++ Y T GI + V P ++Y +
Sbjct: 292 KMNATGKYKE-YNFHVKTDKAGITEGEIRDALQDCGGIYSIKIKYVNSEPTDVVY--ICF 348
Query: 431 RTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGR----MNGNMLPQVGAHYMQQSSQSA 486
A+ F+ QV NP +Q R NG +P +++Q
Sbjct: 349 DNAQSAHQFIQKA----QVLGWTANPFKTKQERSSANNYYNGTGIPGFPVNFLQYFQLFP 404
Query: 487 ASSKDSSNQQ-KGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSP 545
+ S N+Q K G + + K S V + + P +
Sbjct: 405 SVFNTSMNRQPKPGNKQPRNVSASQNAKKKSKVDNNIKKQSKSIEKAPTV---------T 455
Query: 546 EQQKQILGERLYPL---VEKHKPDLVAKITGMLLE-MDNSELLLLLESPESLAVKVEEAV 601
E+ K LG++LY +E + ++ +ITG+LLE ++ SEL +L++ K+EE
Sbjct: 456 EEMKNNLGDQLYDFILGIEDYDEEITGRITGVLLESIEYSELNNMLKN------KIEELK 509
Query: 602 QVLK 605
V+K
Sbjct: 510 SVIK 513
>gi|378756066|gb|EHY66091.1| hypothetical protein NERG_00787 [Nematocida sp. 1 ERTm2]
Length = 513
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 192/377 (50%), Gaps = 23/377 (6%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVC-KDSTTGRSTCYGYVNFLSPHDAIRAIE 71
S+YVGD+ T+ +LF FS+ + +V + K+ + + CY YV F AIE
Sbjct: 20 SIYVGDIPTSTTESDLFQIFSKVGQIYTVIIPRKELSIVKDKCYAYVTFFDEASVPTAIE 79
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGV----ANLFVKNLIESIDNVRLQEMFQNFGNII 127
N +L+G +R+ P ++S V N+ +KNL + DN L + F FG I+
Sbjct: 80 TFNFYELNGSQIRVM-----PLDKESVVNNREGNIVIKNLPKETDNQTLYDTFIIFGPIV 134
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPS 185
SCKV + + G G++Q++ + A AI+ +N + K++ + + K ++ +
Sbjct: 135 SCKVVKNSLSECSGIGYIQYKDPKIAEVAIQMINKIMLNGKKLCAVQCVPNDKREKKREN 194
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
+TN++MKN V EE + +K ++G++ S + R E G RGF F N+ + A
Sbjct: 195 VEKIFTNIYMKNFPKGVEEEEIKKKLEEYGELTSFFVPRAETGEMRGFAFANYKTHEMAE 254
Query: 246 RALEAMN------GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
A+ ++ G+ + LY RA+ K+ER + F ++ + + N+Y+
Sbjct: 255 AAILGLHDKPFFGGNSGEGENLYVQRAKLKSERVEETAGYFANPPEQEVRR----NIYIT 310
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+ D+ +E++ +FS+ G I + K+ D K N+ +G+V + E+A+KAV +
Sbjct: 311 NLPGDLNEEDVVKYFSKYGPINTYKLGTDTKN-NRSYGYVFYQKAEDAAKAVELANKSEY 369
Query: 360 HRKPLYVAIAQRKEDRQ 376
+PL VA + K+ R+
Sbjct: 370 CGQPLGVAFFKCKKLRE 386
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
PP ++Y+ +L D+ + ++ FS++ + + ++ D+ RS YGYV +
Sbjct: 298 PPEQEVRRNIYITNLPGDLNEEDVVKYFSKYGPINTYKLGTDTKNNRS--YGYVFYQKAE 355
Query: 65 DAIRAIEVKNHTQLHGKMLRIS-WSCR 90
DA +A+E+ N ++ G+ L ++ + C+
Sbjct: 356 DAAKAVELANKSEYCGQPLGVAFFKCK 382
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 182/376 (48%), Gaps = 29/376 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L+VG+L P + +L + F F + RV D TG S YG+V + P A AI+
Sbjct: 230 NLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKH 289
Query: 73 KNHTQLHGKML--RISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N + G+ML R++ + ++ ++ L+V NL + +L ++F +G + S K
Sbjct: 290 MNGRMVEGRMLEVRLAGAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSVK 349
Query: 131 VATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG-------------RFI 176
V G SKG+GFV++ + A AI LNG + K++ V + I
Sbjct: 350 VMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQAI 409
Query: 177 KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGF 235
++D L + +N++++NL + + L+ F +GK+ S +A D +G S+G+GF
Sbjct: 410 SETDHQL-TKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGF 468
Query: 236 VNFDNPDDARRALEAMNGSVI-GSKVLYAARAQKKAEREQILRHQFEEKRKERILK-YKG 293
V F +P DA A+ +NG ++ G K+L R E R LK
Sbjct: 469 VKFSDPHDAAHAVIELNGCLVEGRKILVRVRPPSSP---------VESHANNRTLKEIDM 519
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
SN+YV NI + +L F G IT A V+ +KG+GFV F+ A++AV
Sbjct: 520 SNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAM 579
Query: 354 FHGYMLHRKPLYVAIA 369
+G ++ + + V +A
Sbjct: 580 MNGALIEGETISVRVA 595
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 169/347 (48%), Gaps = 26/347 (7%)
Query: 35 FKSLASVRVCKDSTTGRSTCYGYV--NFLSPHDAIRAIEVKNHTQLHGKMLRISWS-CRD 91
FK SV+ D + CY Y +F + R ++ + + K +S+S D
Sbjct: 165 FKKRLSVKFAADVS-----CYTYSTESFAAATVEKRKVQSDDQDKHLCKRQELSFSSAHD 219
Query: 92 PDARKSGVA-NLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSKGHGFVQFET 149
K G NLFV NL S+ + +L E+F FG I+ +V G SKG+GFVQ+
Sbjct: 220 EGKLKEGNGTNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSD 279
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN------LFMKNLDSDVT 203
A AI+++NG R+ GR ++ R+ +P++ T L++ NL +
Sbjct: 280 PRYAAEAIKHMNG------RMVEGRMLEV--RLAGAPSSGSTKEMDMSKLYVCNLPLLLH 331
Query: 204 EEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY 262
E+ L + F +G++ S+ + RD G S+G+GFV + +P A A+ +NG +I K +
Sbjct: 332 EDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKME 391
Query: 263 AARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITS 322
A + E + + SNVYV+N+ + ++L F G +TS
Sbjct: 392 VRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTS 451
Query: 323 AKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
AKV D GI+KG+GFV FS P +A+ AV +G ++ + + V +
Sbjct: 452 AKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILVRV 498
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 167/383 (43%), Gaps = 45/383 (11%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYV +L + + +L D F + + SV+V +D TG S YG+V + P A AI
Sbjct: 321 LYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQL 380
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGV----------------ANLFVKNLIESIDNVRLQ 117
N + GK + + + + V +N++V+NL ++ +L
Sbjct: 381 NGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKLL 440
Query: 118 EMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
+F +G + S KVA G SKG+GFV+F A A+ LNG V ++I V
Sbjct: 441 NLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILV---- 496
Query: 177 KKSDRVLP--SPAAKY-----------TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIA 223
RV P SP + +NL++ N+ S + + LVE F FG+I ++
Sbjct: 497 ----RVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKAKLVELFLPFGRITHAMVV 552
Query: 224 RDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
N +S+G+GFV F + A A+ MNG++I + + A +
Sbjct: 553 EQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVAGLSPSVSSSVSQHSPHS 612
Query: 284 RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS 343
+ +YV N+ ++ ++L + F G I VM E + FV ++
Sbjct: 613 EINASPEINNCRLYVTNLPQTMSADKLVSLFMPFGQIDRV-VMYAE------YSFVLYAD 665
Query: 344 PEEASKAVNTFHGYMLHRKPLYV 366
A+KA+ GY++ K L V
Sbjct: 666 INSAAKALKHMDGYLIEGKRLVV 688
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/429 (24%), Positives = 177/429 (41%), Gaps = 52/429 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++LYV ++ + +L + F F + V + S S YG+V F H A A+
Sbjct: 520 SNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNS-SKGYGFVKFADSHCAAEAVA 578
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGV----------------ANLFVKNLIESIDNVR 115
+ N + G+ + + + P S L+V NL +++ +
Sbjct: 579 MMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADK 638
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
L +F FG I V +E + FV + SA A+++++G + KR+ V
Sbjct: 639 LVSLFMPFGQIDRV-VMYAE------YSFVLYADINSAAKALKHMDGYLIEGKRLVV--- 688
Query: 176 IKKSDRVLPSPAAK---------------YTNLFMKNLDSDVTEEHLVEKFSKFGKIASL 220
K LP+ AA+ NL++ + S VT E LV+ F +G+I
Sbjct: 689 --KGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIFCLYGEIV-- 744
Query: 221 LIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
G+G + + N A A++ ++G IG L A AE + +
Sbjct: 745 ----QAKKFDAGYGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVAGLPAESDVATFART 800
Query: 281 EEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFV 339
+ + +N+YV + VT ++L F CG IT AKV+ D+ G++KGFGFV
Sbjct: 801 PQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFV 860
Query: 340 CFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANV-I 398
F+ A+ A+ +GY L L V A + A + + + S V I
Sbjct: 861 RFADAYSAATAITHMNGYPLDGHMLAVRTAGVQPSDMASYMAHFYSYFTSTDPSRMAVGI 920
Query: 399 PSGYPSLYY 407
P+ S YY
Sbjct: 921 PTSDWSYYY 929
>gi|331243001|ref|XP_003334145.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313135|gb|EFP89726.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 145/278 (52%), Gaps = 13/278 (4%)
Query: 5 PPTATTPA--SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRST-CYGYVNFL 61
P + TPA S+YVGDL ++T+ EL FS+ + SV++ S + + Y Y+ +
Sbjct: 19 PLSQPTPAEHSVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGPRAYAYIAYS 78
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
S AI NHT+ GK R+ R + AN+FV++L ++ + + F
Sbjct: 79 SADKVDEAIREYNHTKFAGKPCRVMKPKRG-IVKGPPEANVFVQDLPLALSALAFHDTFA 137
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV----GDKRIYVGRFIK 177
FG I+S +++ + SKG+GF+Q+ T E A AAI NG+ + G+K I F+K
Sbjct: 138 EFGEILSSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLDVAGGEKPIRTSIFVK 197
Query: 178 KSDRVLPS---PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
K P+ A ++ NLF KNL +D+T E +SK+G I S ++ DE+G G
Sbjct: 198 KDAPSSPTSRAAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTA 257
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
F +F N DA R ++A G +YA RA KAER
Sbjct: 258 FASFQNHSDAVRVIKATQRK--GPDEVYAVRALSKAER 293
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 117/254 (46%), Gaps = 14/254 (5%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKV---ATSEDGKSKGHGFVQFETEESANAAI 157
+++V +L +I L ++F ++S ++ + S G + + ++ + + + + AI
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKG-PRAYAYIAYSSADKVDEAI 87
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
N T K R +K ++ P N+F+++L ++ + F++FG+I
Sbjct: 88 REYNHTKFAGKPC---RVMKPKRGIVKGPPE--ANVFVQDLPLALSALAFHDTFAEFGEI 142
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S ++ D S+G+GF+ + + A+ A+ NGS+ L A +K ++
Sbjct: 143 LSSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSL-----LDVAGGEKPIRTSIFVK 197
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
R + N++ KN+ D+T E KA +S+ G ITSA + DE G G
Sbjct: 198 KDAPSSPTSRAAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTA 257
Query: 338 FVCFSSPEEASKAV 351
F F + +A + +
Sbjct: 258 FASFQNHSDAVRVI 271
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 97/197 (49%), Gaps = 27/197 (13%)
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI---ARDENGTSRGFGFVNFDN 240
P+PA ++++ +L +++TEE L++ FS+ + S+ I +R G R + ++ + +
Sbjct: 23 PTPAEH--SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKG-PRAYAYIAYSS 79
Query: 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
D A+ N + K R K + I++ E +NV+V++
Sbjct: 80 ADKVDEAIREYNHTKFAGK---PCRVMKP--KRGIVKGPPE------------ANVFVQD 122
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+ ++ F++ G I S+++ D + ++KG+GF+ +++ E+A A+ +G +L
Sbjct: 123 LPLALSALAFHDTFAEFGEILSSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLD 182
Query: 361 ----RKPLYVAIAQRKE 373
KP+ +I +K+
Sbjct: 183 VAGGEKPIRTSIFVKKD 199
>gi|18677184|gb|AAL78224.1|AF345796_1 hypothetical protein Hgg-30 [Heterodera glycines]
Length = 219
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Query: 264 ARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSA 323
RAQKK+ER+ L+ ++E+ + ERI +Y+G N+YVKN+ D + DE L+++F G ITSA
Sbjct: 19 CRAQKKSERQAELKRRYEQYKAERIQRYQGVNLYVKNLHDTINDETLRSNFESYGNITSA 78
Query: 324 KVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
KVM DE G +KGFGFVCF +EA+KAV + ++ KPLYVA+AQRKEDR+A L QY
Sbjct: 79 KVMCDEHGRSKGFGFVCFEKADEATKAVVEMNNKIIENKPLYVALAQRKEDRKAQLASQY 138
Query: 384 AQHMAGIEGSSANVIPSGYPSLYYTTPPG 412
Q +A + + P+G Y G
Sbjct: 139 MQRLAAMRMQN----PAGLMGTMYAPASG 163
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
NL++KNL + +E L F +G I S + DE+G S+GFGFV F+ D+A +A+
Sbjct: 49 VNLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVE 108
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
MN +I +K LY A AQ+K +R+ L Q+ ++
Sbjct: 109 MNNKIIENKPLYVALAQRKEDRKAQLASQYMQR 141
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 95 RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESAN 154
R GV NL+VKNL ++I++ L+ F+++GNI S KV E G+SKG GFV FE + A
Sbjct: 45 RYQGV-NLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEAT 103
Query: 155 AAIENLNGTTVGDKRIYVGRFIKKSDR 181
A+ +N + +K +YV +K DR
Sbjct: 104 KAVVEMNNKIIENKPLYVALAQRKEDR 130
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYV +LH + D L F + ++ S +V D GRS +G+V F +A +A+
Sbjct: 50 NLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEH-GRSKGFGFVCFEKADEATKAVVE 108
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL 107
N+ + K L ++ + R D RK+ +A+ +++ L
Sbjct: 109 MNNKIIENKPLYVALAQRKED-RKAQLASQYMQRL 142
>gi|55417872|gb|AAV50098.1| polyadenylate binding protein [Caenorhabditis remanei]
Length = 179
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 92/136 (67%), Gaps = 2/136 (1%)
Query: 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
AQKK+ER L+ + E+ + ER+ KY+G N+YVKN+D+ V DE LK F G ITSAKV
Sbjct: 1 AQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKV 60
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
M DE G +KGFGFVCF PEEA+ AV + M+ KPLYVA+AQRKEDR+A L QY Q
Sbjct: 61 MTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQ 120
Query: 386 HMAGIEGSSANVIPSG 401
+A + S +P G
Sbjct: 121 RLASMRMHSN--VPGG 134
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 59/93 (63%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
NL++KNLD V +E L ++F FG I S + DENG S+GFGFV F+ P++A A+
Sbjct: 29 VNLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTE 88
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
MN ++ SK LY A AQ+K +R L Q+ ++
Sbjct: 89 MNSKMVCSKPLYVALAQRKEDRRAQLASQYMQR 121
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
NL+VKNL ES+D+ L++ F+NFGNI S KV T E+G+SKG GFV FE E A A+ +
Sbjct: 30 NLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEM 89
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
N V K +YV +K DR A+ + +M+ L S
Sbjct: 90 NSKMVCSKPLYVALAQRKEDR-----RAQLASQYMQRLAS 124
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYV +L V D L F F ++ S +V D GRS +G+V F P +A A+
Sbjct: 30 NLYVKNLDESVDDEALKKQFENFGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATTAVTE 88
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL 107
N + K L ++ + R D R++ +A+ +++ L
Sbjct: 89 MNSKMVCSKPLYVALAQRKED-RRAQLASQYMQRL 122
>gi|440302784|gb|ELP95091.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 546
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 184/360 (51%), Gaps = 27/360 (7%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEF--KSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P +++V L +VTD L E + S+ V K+ + T Y+N +S
Sbjct: 15 PDFEDNKTIFVSGLTNNVTDSLLSSVVMEKFPTEVVSIHVTKNESHF-DTPIAYIN-MST 72
Query: 64 HDAI-RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
HDA R I N + GK + + W+ +D R NLFVKN+ +S++ LQ++F
Sbjct: 73 HDAAKRVISTLNGVMVDGKPINMFWALKDFKQRTDTQTNLFVKNIKKSVNQKELQDVFSA 132
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN--GTTVGDKRIYVGRFIKKSD 180
G +S K++ +E G+S G G+V++ T E+ AA++ + +G++ V +F K++
Sbjct: 133 IGETLSVKLSLNEKGESNGFGYVKYRTLEATQAALDKSDELKAKIGEETFVVQKFEKQN- 191
Query: 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS--------LLIARDENGTSRG 232
++ TNL++ N+D VTEE ++ F FG I L ++ + T++
Sbjct: 192 ------KSRKTNLYVYNIDKKVTEEQFIKYFETFGPIRKTSDKKPQVLFVSEETKDTAK- 244
Query: 233 FGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYK 292
GFV+F+N +DA +A+ A SV+G+ + A + K ER + + + E + KYK
Sbjct: 245 -GFVDFENEEDAAKAVSAPKNSVLGNGEIVVAYYKNKEERRREWKAKTAEVKANIKGKYK 303
Query: 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV-MRDEKGINKGFGFVCFSSPEEASKAV 351
N+YV + + +T++E++ + G I S + D K G ++C+++ E A+ A+
Sbjct: 304 DFNLYVDTLKESITEKEIREGLGEEGEIYSLSIRWVDRKPT--GVAYLCYTTAEGANNAI 361
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 151/333 (45%), Gaps = 39/333 (11%)
Query: 97 SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAA 156
SG+ N +L+ S+ + E F ++S V +E ++ T ++A
Sbjct: 26 SGLTNNVTDSLLSSV----VMEKFPT--EVVSIHVTKNESHFDTPIAYINMSTHDAAKRV 79
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGK 216
I LNG V K I + +K TNLF+KN+ V ++ L + FS G+
Sbjct: 80 ISTLNGVMVDGKPINMFWALKD----FKQRTDTQTNLFVKNIKKSVNQKELQDVFSAIGE 135
Query: 217 IASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQIL 276
S+ ++ +E G S GFG+V + R LEA ++ S L A K E +
Sbjct: 136 TLSVKLSLNEKGESNGFGYVKY-------RTLEATQAALDKSDELKA-----KIGEETFV 183
Query: 277 RHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI--TSAK----VMRDEK 330
+FE++ K R +N+YV NID VT+E+ +F G I TS K + E+
Sbjct: 184 VQKFEKQNKSR-----KTNLYVYNIDKKVTEEQFIKYFETFGPIRKTSDKKPQVLFVSEE 238
Query: 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 390
+ GFV F + E+A+KAV+ +L + VA + KE+R+ + + A+ A I
Sbjct: 239 TKDTAKGFVDFENEEDAAKAVSAPKNSVLGNGEIVVAYYKNKEERRREWKAKTAEVKANI 298
Query: 391 EGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGL 423
+G + +LY T +++ R GL
Sbjct: 299 KGKYKDF------NLYVDTLKESITEKEIREGL 325
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 25/271 (9%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
T +L+V ++ V EL D FS SV++ + G S +GYV + + A
Sbjct: 108 TQTNLFVKNIKKSVNQKELQDVFSAIGETLSVKLSLNE-KGESNGFGYVKYRTLEATQAA 166
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDAR-KSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
++ +L K+ ++ + + + KS NL+V N+ + + + + F+ FG I
Sbjct: 167 LD--KSDELKAKIGEETFVVQKFEKQNKSRKTNLYVYNIDKKVTEEQFIKYFETFGPIRK 224
Query: 129 CK------VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR- 181
+ SE+ K GFV FE EE A A+ + +G+ I V + K +R
Sbjct: 225 TSDKKPQVLFVSEETKDTAKGFVDFENEEDAAKAVSAPKNSVLGNGEIVVAYYKNKEERR 284
Query: 182 ---------VLPSPAAKYT--NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS 230
V + KY NL++ L +TE+ + E + G+I SL I R +
Sbjct: 285 REWKAKTAEVKANIKGKYKDFNLYVDTLKESITEKEIREGLGEEGEIYSLSI-RWVDRKP 343
Query: 231 RGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
G ++ + + A A+ + G+ +G KV
Sbjct: 344 TGVAYLCYTTAEGANNAI--VKGTQLGWKVF 372
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 28/167 (16%)
Query: 193 LFMKNLDSDVTEEHL----VEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
+F+ L ++VT+ L +EKF ++ S+ + ++E+ ++N D A+R +
Sbjct: 23 IFVSGLTNNVTDSLLSSVVMEKFP--TEVVSIHVTKNESHFDTPIAYINMSTHDAAKRVI 80
Query: 249 EAMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+NG ++ K + +A + K+ Q +N++VKNI V
Sbjct: 81 STLNGVMVDGKPINMFWALKDFKQRTDTQ-------------------TNLFVKNIKKSV 121
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVN 352
+EL+ FS G S K+ +EKG + GFG+V + + E A++
Sbjct: 122 NQKELQDVFSAIGETLSVKLSLNEKGESNGFGYVKYRTLEATQAALD 168
>gi|47229360|emb|CAF99348.1| unnamed protein product [Tetraodon nigroviridis]
Length = 128
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P A+ P ASLYVGDLHPDVT+ L++ FS ++ S+RVC+D T RS Y YVNF P
Sbjct: 3 PSAASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA RA++ N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F F
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 124 GNIISC 129
GNI+SC
Sbjct: 123 GNILSC 128
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 19/140 (13%)
Query: 187 AAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
AA Y +L++ +L DVTE L EKFS G I S+ + RD S G+ +VNF P D
Sbjct: 5 AASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN VI K +I+ Q R + K N+++KN+D
Sbjct: 65 AERALDTMNFDVI------------KGRPVRIMWSQ----RDPSLRKSGVGNIFIKNLDK 108
Query: 304 DVTDEELKAHFSQCGTITSA 323
+ ++ L FS G I S
Sbjct: 109 SIDNKALYDTFSAFGNILSC 128
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIAS 219
FS FG I S
Sbjct: 118 TFSAFGNILS 127
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G I S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ +P+ + +QR
Sbjct: 66 ERALDTMNFDVIKGRPVRIMWSQR 89
>gi|167534320|ref|XP_001748838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772800|gb|EDQ86448.1| predicted protein [Monosiga brevicollis MX1]
Length = 514
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 172/358 (48%), Gaps = 24/358 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASL + L T+ +L + F S+ + +DS + + +GYVNF AI AI+
Sbjct: 11 ASLRIDHLPETATESQLAELFGAIGDFKSIHIIRDSISNKPLGHGYVNFEDVDSAIEAIK 70
Query: 72 VKNHTQLHG----KMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
V + L G K + +S++ P + + LFVKNL E +DN + + F + G
Sbjct: 71 VLDGMDLTGGNDDKGISLSFTPSQPASSAASSGTLFVKNLAEDVDNKTIFDTFASIGAPS 130
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
S KV T+ +GKS+G V ++ + A A++ L G V K I + R+ ++ L +
Sbjct: 131 SAKVMTTAEGKSRGFAIVHYDDPQLAQRALDELEGVVVNGKNIRLERY--QTGAQLKEES 188
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASL-LIARDENGTSRGFGFVNFDNPDDARR 246
K T +++ L +VT++ L++ S FG + S+ L +D++ FV ++ R
Sbjct: 189 RKRT-VYLAGLPHEVTDKQLIDLLSPFGSVISVKLYPKDKDRNP--VAFVTMEDEQAVLR 245
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQ----ILRHQFEEKRKERILKYKGSNVYVKNID 302
A+E +NG + + A+ Q + Q Q EE K + +YV+NI
Sbjct: 246 AVEKLNGGSFERQRITVAQLQARNPATQSSGPTSARQVEET--------KDATLYVRNIY 297
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+DV D +L F G ++ + R G +GF FV F +PE+ + A+ G ML
Sbjct: 298 EDVQDSDLSEAFGVFGPVSRVTIPRSANGDTRGFAFVVFENPEDRAHALAA--GNMLE 353
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 136/270 (50%), Gaps = 18/270 (6%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L+V +L DV + +FD F+ + +S +V + G+S + V++ P A RA++
Sbjct: 104 TLFVKNLAEDVDNKTIFDTFASIGAPSSAKVMT-TAEGKSRGFAIVHYDDPQLAQRALDE 162
Query: 73 KNHTQLHGKMLRI----SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
++GK +R+ + + ++RK V ++ L + + +L ++ FG++IS
Sbjct: 163 LEGVVVNGKNIRLERYQTGAQLKEESRKRTV---YLAGLPHEVTDKQLIDLLSPFGSVIS 219
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL---PS 185
K+ +D FV E E++ A+E LNG + +RI V + ++ P+
Sbjct: 220 VKL-YPKDKDRNPVAFVTMEDEQAVLRAVEKLNGGSFERQRITVAQLQARNPATQSSGPT 278
Query: 186 PA-----AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240
A K L+++N+ DV + L E F FG ++ + I R NG +RGF FV F+N
Sbjct: 279 SARQVEETKDATLYVRNIYEDVQDSDLSEAFGVFGPVSRVTIPRSANGDTRGFAFVVFEN 338
Query: 241 PDDARRALEAMNG-SVIGSKVLYAARAQKK 269
P+D AL A N V G KV Y+A K+
Sbjct: 339 PEDRAHALAAGNMLEVGGGKVQYSAYRTKE 368
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 17/188 (9%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
+L + +L TE L E F G S+ I RD + G G+VNF++ D A A++
Sbjct: 12 SLRIDHLPETATESQLAELFGAIGDFKSIHIIRDSISNKPLGHGYVNFEDVDSAIEAIKV 71
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++G + ++ + F + G+ ++VKN+ +DV ++ +
Sbjct: 72 LDGMDLTG-----------GNDDKGISLSFTPSQPASSAASSGT-LFVKNLAEDVDNKTI 119
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL----YV 366
F+ G +SAKVM +G ++GF V + P+ A +A++ G +++ K + Y
Sbjct: 120 FDTFASIGAPSSAKVMTTAEGKSRGFAIVHYDDPQLAQRALDELEGVVVNGKNIRLERYQ 179
Query: 367 AIAQRKED 374
AQ KE+
Sbjct: 180 TGAQLKEE 187
>gi|320168681|gb|EFW45580.1| polyadenylate-binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 814
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 147/280 (52%), Gaps = 27/280 (9%)
Query: 96 KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANA 155
K G L VKNL +D+ +L+++F FG + CKVA+S G G V +E+ + A+A
Sbjct: 75 KVGAIKLVVKNLDPRMDDQQLRDIFGEFGTMTLCKVASS-----IGVGLVTYESFDDAHA 129
Query: 156 AIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFG 215
A+ +NG + +++ V R ++ PS L ++NL +D +EE L FG
Sbjct: 130 AMTQVNGMYLNGQQVQVHRLPER-----PS-------LIVRNLPADASEESLAALCRPFG 177
Query: 216 KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI 275
++ I + E G V D +DA A+ A++GS +GS L +AERE
Sbjct: 178 RVGVATIVQ-EAPEDAPMGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAERE-- 234
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG 335
E +R+ + +G V +KN+D D+ D++L+ F+ GTI S +MRDE G +KG
Sbjct: 235 ----CESAVAQRLERLQGKLV-IKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKG 289
Query: 336 FGFVCFSSPEEASKAVNTFHGYMLHR--KPLYVAIAQRKE 373
+GFV +S+ E ASKA+ HG R +PL V I E
Sbjct: 290 YGFVAYSTTEAASKAMAATHGQTFDRLTRPLDVTIFTSSE 329
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 177/379 (46%), Gaps = 35/379 (9%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L V +L P + D +L D F EF ++ +CK S G V + S DA A+
Sbjct: 81 LVVKNLDPRMDDQQLRDIFGEFGTMT---LCK---VASSIGVGLVTYESFDDAHAAMTQV 134
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N L+G+ +++ P +L V+NL L + + FG +
Sbjct: 135 NGMYLNGQQVQVHRLPERP--------SLIVRNLPADASEESLAALCRPFGRV-GVATIV 185
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT-- 191
E + G V + E A AI L+G+ +G ++ V +++R S A+
Sbjct: 186 QEAPEDAPMGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAERECESAVAQRLER 245
Query: 192 ---NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
L +KN+D D+ ++ L E F+ FG I SL I RDE G S+G+GFV + + A +A+
Sbjct: 246 LQGKLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAYSTTEAASKAM 305
Query: 249 EAMNGSVIG------SKVLYAARAQK---KAEREQILRHQFEEKRKERILKYKGSNVYVK 299
A +G ++ + KA R +RH E R + K N+ ++
Sbjct: 306 AATHGQTFDRLTRPLDVTIFTSSEHDGMFKANRVAEVRHHAEVARIAQFRK----NLCIR 361
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
N+ + + +++L+A F+ G I + V+RD+ G ++ GFV F++ EEASKAV HG
Sbjct: 362 NLGESIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGKPS 421
Query: 360 --HRKPLYVAIAQRKEDRQ 376
+ P+ V ++ R D Q
Sbjct: 422 PGTQMPMTVTLSHRARDAQ 440
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 156/317 (49%), Gaps = 44/317 (13%)
Query: 65 DAIRAIEVKNHTQLHGKMLRISW-SCRDPDARKSGVAN--------LFVKNLIESIDNVR 115
DA+ AI + ++L L +++ + R +S VA L +KN+ +D+ +
Sbjct: 204 DALTAIRALHGSKLGSNQLSVTFPATRAERECESAVAQRLERLQGKLVIKNMDVDMDDDQ 263
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG------DKR 169
L+E+F FG IIS + E GKSKG+GFV + T E+A+ A+ +G T D
Sbjct: 264 LEELFAPFGTIISLHIMRDETGKSKGYGFVAYSTTEAASKAMAATHGQTFDRLTRPLDVT 323
Query: 170 IYV-----GRFIKKSDRV--------LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGK 216
I+ G F K++RV + A NL ++NL + E+ L F+ FGK
Sbjct: 324 IFTSSEHDGMF--KANRVAEVRHHAEVARIAQFRKNLCIRNLGESIDEKQLRALFAPFGK 381
Query: 217 IASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG-----SVIGSKVLYAARAQK--- 268
I + + RD+ G SR GFV+F ++A +A+ M+G + + V + RA+
Sbjct: 382 IRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGKPSPGTQMPMTVTLSHRARDAQD 441
Query: 269 ----KAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK 324
A + + E + +I K +YVKNID V E+L+ F Q G I S+
Sbjct: 442 PPAPNASGKDSSTDEAEPDAEGQIRPRK--LIYVKNIDPAVELEDLQRVFGQFGAIVSSN 499
Query: 325 VMRDEKGINKGFGFVCF 341
+MRD+ GI+KG G V +
Sbjct: 500 IMRDDAGISKGIGHVDY 516
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 170/349 (48%), Gaps = 34/349 (9%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
+YV ++ P V +L F +F ++ S + +D G S G+V++L A A+
Sbjct: 471 IYVKNIDPAVELEDLQRVFGQFGAIVSSNIMRDDA-GISKGIGHVDYLHADAARAAVAAM 529
Query: 74 NHTQLH--GKMLRISWSCRDPDARKSGV--ANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
+ +L G+ LR+S DP R S + A+L +KNL +SI+ L+++F FG I+S
Sbjct: 530 DGKRLTATGQPLRVSLP--DPRDRFSPIRYASLIIKNLEQSINLSALRDLFSPFGCILSS 587
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK 189
+ ++ + V F +EE+ AI N+NG V + +++K R
Sbjct: 588 RTIETQPRAA----LVDFLSEEACQNAIANINGAIVNGLPVTASPYVRKDRR-------- 635
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
++++ NL ++ L+ F+ GKI + ++ RD + GFV FD P A E
Sbjct: 636 --SVYVANLPANYNYVKLMALFADCGKIVTTIVPRDFSTV----GFVCFDQPASVELA-E 688
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+G V+ + LY +R + + H E IL Y+ N+D + ++++
Sbjct: 689 RFHGHVLEGEELYVSRFPLQTDPAPP-PHATSEVAPYHIL-------YLTNVDFEASEDK 740
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM 358
++ + GT+T+ V R G ++GF FV F++ E+ASKA + G +
Sbjct: 741 VRELCAPYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKAKDALSGQI 789
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 171/392 (43%), Gaps = 82/392 (20%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L + +L + + +L F+ F + + V +D GRS G+V+F + +A +A+
Sbjct: 357 NLCIRNLGESIDEKQLRALFAPFGKIRTCHVLRDDM-GRSRKVGFVDFATMEEASKAV-- 413
Query: 73 KNHTQLHGKM-------LRISWSCRDPDARKSGVAN------------------------ 101
++HGK + ++ S R DA+ N
Sbjct: 414 ---AEMHGKPSPGTQMPMTVTLSHRARDAQDPPAPNASGKDSSTDEAEPDAEGQIRPRKL 470
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
++VKN+ +++ LQ +F FG I+S + + G SKG G V + ++A AA+ ++
Sbjct: 471 IYVKNIDPAVELEDLQRVFGQFGAIVSSNIMRDDAGISKGIGHVDYLHADAARAAVAAMD 530
Query: 162 GTTVGDKRIY-VGRFIKKSDRVLPSP-----AAKYTNLFMKNLDSDVTEEHLVEKFSKFG 215
G KR+ G+ ++ S LP P +Y +L +KNL+ + L + FS FG
Sbjct: 531 G-----KRLTATGQPLRVS---LPDPRDRFSPIRYASLIIKNLEQSINLSALRDLFSPFG 582
Query: 216 KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI 275
I S +R R V+F + + + A+ +NG+++ + A+ +K R
Sbjct: 583 CILS---SRTIETQPRA-ALVDFLSEEACQNAIANINGAIVNGLPVTASPYVRKDRR--- 635
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG 335
+VYV N+ + +L A F+ CG I + V RD +
Sbjct: 636 -------------------SVYVANLPANYNYVKLMALFADCGKIVTTIVPRDFSTV--- 673
Query: 336 FGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
GFVCF P A FHG++L + LYV+
Sbjct: 674 -GFVCFDQPASVELA-ERFHGHVLEGEELYVS 703
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 20/248 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASL + +L + L D FS F + S R + T R+ V+FLS AI
Sbjct: 558 ASLIIKNLEQSINLSALRDLFSPFGCILSSRTIE--TQPRA---ALVDFLSEEACQNAIA 612
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N ++G L ++ S P RK +++V NL + + V+L +F + G I++ V
Sbjct: 613 NINGAIVNG--LPVTAS---PYVRKDR-RSVYVANLPANYNYVKLMALFADCGKIVTTIV 666
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP----SPA 187
D + G FV F+ S A E +G + + +YV RF ++D P S
Sbjct: 667 --PRDFSTVG--FVCFDQPASVELA-ERFHGHVLEGEELYVSRFPLQTDPAPPPHATSEV 721
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A Y L++ N+D + +E+ + E + +G + ++ + R +GTSRGF FV+F N +DA +A
Sbjct: 722 APYHILYLTNVDFEASEDKVRELCAPYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKA 781
Query: 248 LEAMNGSV 255
+A++G +
Sbjct: 782 KDALSGQI 789
>gi|106879567|emb|CAJ38367.1| polyA-binding protein [Plantago major]
Length = 314
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 164/306 (53%), Gaps = 36/306 (11%)
Query: 319 TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
TITS KVMRD GI++G GFV FS+PEE+++A++ +G M+ KPLYVA+AQRKE+R+A
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRAR 60
Query: 379 LQLQYAQH----MAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGLMYQPLG 429
LQ Q++Q M + P G P + Y PP + +P + G YQ
Sbjct: 61 LQAQFSQMRPVAMPPSIAPRMPMYPPGAPGIGQQLFYGQGPPAM---IPSQAGFGYQ-QQ 116
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASS 489
L G R G +P+P N +G+ + G MQQ+ Q
Sbjct: 117 LVPGMRPGG-----------TPMP-NFFMPMVQQGQQGQRPGGRRGGGPMQQAQQPVPVM 164
Query: 490 KDSSNQQKGGQSKYVPNGRIRELN-KGSGVSLGTFNSGGVMAR------KP---DMLNGM 539
+ +G ++ P + ++ G G+ ++ G++ R +P L
Sbjct: 165 Q-QQMMPRGRMYRFPPGRNVPDVPMTGGGMFSVPYDMTGMLPRDAAAIPQPMPVTALASA 223
Query: 540 LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEE 599
LA +PEQQ+ +LGE LYPLV++ + + AK+TGMLLEMD +E+L LLESP++L KV E
Sbjct: 224 LANATPEQQRTMLGENLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALKSKVNE 283
Query: 600 AVQVLK 605
A++VL+
Sbjct: 284 AMEVLR 289
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 217 IASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQIL 276
I S + RD +G SRG GFV F P+++ RAL MNG ++ SK LY A AQ+K ER L
Sbjct: 2 ITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRARL 61
Query: 277 RHQFEEKR 284
+ QF + R
Sbjct: 62 QAQFSQMR 69
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
I SCKV G S+G GFV F T E + A+ +NG V K +YV +K +R
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEER 57
>gi|123446312|ref|XP_001311908.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893735|gb|EAX98978.1| hypothetical protein TVAG_431870 [Trichomonas vaginalis G3]
Length = 574
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 150/276 (54%), Gaps = 17/276 (6%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++V +L P VT L FSE ++ +V + + T+ CY +V+F +A A+
Sbjct: 16 IHVANLPPTVTVEFLKSLFSEAGTVINVILKQKPTS----CYAFVDFTLQEEAETAVRDF 71
Query: 74 NHTQLHGKMLRISWSCRDP-DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+T+L+G+ + ++ + A SG NLF+K L ESID ++L E+F N+G I+SC++
Sbjct: 72 NYTKLNGETIIVTRTTAPVVSAISSGQGNLFIKGLDESIDCLQLHELFANYGEIVSCRIP 131
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP-----A 187
T +G+ +G G+VQF +E A A++ L +TV K I +G F+K+S+R L +
Sbjct: 132 TL-NGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGPFLKRSERPLSAAFQNNLD 190
Query: 188 AKYTNLFMKNLDSDV-TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
+ +TN+F+KNL ++ T L+ F +FG + S I + R G+V + A R
Sbjct: 191 SSFTNVFVKNLPDNINTLLSLLRLFHEFGDVTSARIVPE-----RHIGYVMMSEHEAAVR 245
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEE 282
A+ + G I K L R+ AER ++ EE
Sbjct: 246 AVVGLCGRTIFGKRLSVCRSLSPAERANFIKKPIEE 281
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 77/187 (41%), Gaps = 19/187 (10%)
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
K + + NL VT E L FS+ G + ++++ + + FV+F ++A A+
Sbjct: 12 KENGIHVANLPPTVTVEFLKSLFSEAGTVINVILKQKPTSC---YAFVDFTLQEEAETAV 68
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
N + + + + R + N+++K +D+ +
Sbjct: 69 RDFNYTKLNGETIIVTRTTAPVVSA---------------ISSGQGNLFIKGLDESIDCL 113
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+L F+ G I S ++ G +GFG+V F E+A A+ ++ KP+ +
Sbjct: 114 QLHELFANYGEIVSCRI-PTLNGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGP 172
Query: 369 AQRKEDR 375
++ +R
Sbjct: 173 FLKRSER 179
>gi|402466517|gb|EJW01988.1| hypothetical protein EDEG_03560 [Edhazardia aedis USNM 41457]
Length = 571
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 140/246 (56%), Gaps = 9/246 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKD---STTGRSTCYGYVNFLSPHDAIRA 69
++YVGDL+P D +L FS ++ S+++ + +TG S CY YVN+ + A++A
Sbjct: 7 TVYVGDLNPLTLDTDLHRLFSTQGTVLSIKMIHNPNLESTG-SLCYAYVNYENSDCALKA 65
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDAR--KSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
++ N +LHG +R+ + + + K G N+ VKNL S DN L + F FG+II
Sbjct: 66 VQNLNFAELHGTQIRVMLYNKQKNLKGQKIGKYNIIVKNLPVSCDNKTLYDTFSVFGDII 125
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
S KVA + K KG GFV ++ + S AI +GT + + V +F++K DRV+
Sbjct: 126 SSKVAVDSENKPKGFGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDRVVEKDK 185
Query: 188 AK--YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
+ +TN ++KN ++EE L E + +G+I S ++ R+ + + +GF F NF + A+
Sbjct: 186 IEELFTNCYIKNF-GGLSEEQLKEICANYGEITSFVVPRNADNSLKGFAFCNFKDHVSAK 244
Query: 246 RALEAM 251
+A+E +
Sbjct: 245 KAIEDL 250
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 178/385 (46%), Gaps = 32/385 (8%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++ V +L + L+D FS F + S +V DS + +G+V + +AI +
Sbjct: 99 NIIVKNLPVSCDNKTLYDTFSVFGDIISSKVAVDSE-NKPKGFGFVCYKDKMSVKKAILL 157
Query: 73 KNHTQLHGKMLRISWSCRDPD--ARKSGVANLFVKNLIESIDNV---RLQEMFQNFGNII 127
+ T ++G ML+++ R D K + LF I++ + +L+E+ N+G I
Sbjct: 158 AHGTNMNGNMLKVAKFLRKEDRVVEKDKIEELFTNCYIKNFGGLSEEQLKEICANYGEIT 217
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF-IKKSDRVLPSP 186
S V + D KG F F+ SA AIE+L+ ++ D +F IK S R+ +
Sbjct: 218 SFVVPRNADNSLKGFAFCNFKDHVSAKKAIEDLHDLSIED---ICEKFDIKISKRLSDAE 274
Query: 187 AAKYTNLFMKN---LDSDVTEEHLVEKFSKFGKIASLLIARDE---------NGTSRGFG 234
+ NL N L D + K GK ++ +++ ++ G
Sbjct: 275 GEENKNLNSSNKYKLSDDESSSTSENKEESKGKKTNIDDQKEDLKSENESNNEISNNNTG 334
Query: 235 FVN-FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
N N D A E + + + + Y RAQ + ER + L+ +F +K E L YK
Sbjct: 335 KSNESTNSSDLNAAFENLKITTVEN--FYIQRAQTRQERHEFLK-EFIKKAAEENLSYK- 390
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG--FGFVCFSSPEEASKAV 351
N+Y+ + +++++ FS+ GTIT+ K+ D IN G F ++C+ +PEEA A+
Sbjct: 391 RNLYITTLPPTASEKDVLEIFSKHGTITNFKLKSD---INTGLKFCYICYKTPEEALIAL 447
Query: 352 NTFHGYMLHRKPLYVAIAQRKEDRQ 376
+ +L L V+ + K++RQ
Sbjct: 448 ERGNETILDGHKLNVSFFKTKKERQ 472
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 16/243 (6%)
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKG---HGFVQFETEESANAAIENLNGTTVGDKRIYV 172
L +F G ++S K+ + + +S G + +V +E + A A++NLN + +I V
Sbjct: 22 LHRLFSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCALKAVQNLNFAELHGTQIRV 81
Query: 173 GRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRG 232
+ K+ + + KY N+ +KNL + L + FS FG I S +A D +G
Sbjct: 82 MLYNKQKN-LKGQKIGKY-NIIVKNLPVSCDNKTLYDTFSVFGDIISSKVAVDSENKPKG 139
Query: 233 FGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYK 292
FGFV + + ++A+ +G+ + +L A+ +K +R E+ + E +
Sbjct: 140 FGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDR------VVEKDKIEELF--- 190
Query: 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVN 352
+N Y+KN +++E+LK + G ITS V R+ KGF F F A KA+
Sbjct: 191 -TNCYIKNF-GGLSEEQLKEICANYGEITSFVVPRNADNSLKGFAFCNFKDHVSAKKAIE 248
Query: 353 TFH 355
H
Sbjct: 249 DLH 251
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 211 FSKFGKIASLLIARDENGTSRG---FGFVNFDNPDDARRALEAMN-GSVIGSKVLYAARA 266
FS G + S+ + + N S G + +VN++N D A +A++ +N + G+++
Sbjct: 26 FSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCALKAVQNLNFAELHGTQIRVMLYN 85
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
++K + Q +I KY N+ VKN+ ++ L FS G I S+KV
Sbjct: 86 KQKNLKGQ------------KIGKY---NIIVKNLPVSCDNKTLYDTFSVFGDIISSKVA 130
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
D + KGFGFVC+ KA+ HG ++ L VA RKEDR
Sbjct: 131 VDSENKPKGFGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDR 179
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 154 NAAIENLNGTTVGDKRI-----------YVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDV 202
NAA ENL TTV + I ++ FIKK+ + NL++ L
Sbjct: 346 NAAFENLKITTVENFYIQRAQTRQERHEFLKEFIKKA---AEENLSYKRNLYITTLPPTA 402
Query: 203 TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY 262
+E+ ++E FSK G I + + D N T F ++ + P++A ALE N +++ L
Sbjct: 403 SEKDVLEIFSKHGTITNFKLKSDIN-TGLKFCYICYKTPEEALIALERGNETILDGHKLN 461
Query: 263 AARAQKKAEREQ 274
+ + K ER++
Sbjct: 462 VSFFKTKKERQE 473
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 179/372 (48%), Gaps = 34/372 (9%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVG+L V +L + F F + RV D TG S YG+V + P A AI+
Sbjct: 299 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 358
Query: 74 NHTQLHGKMLRI-------SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N + G+ L + S ++++ +A L+V NL S++ RL +F FG +
Sbjct: 359 NGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEV 418
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV---GRFIKKSDRV 182
+ KVA G SKG+GFVQ+ + A A+ +LNG V ++I V G +
Sbjct: 419 TNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSA 478
Query: 183 LPSPAAKYT-------NLFMKNLDSDVTEEHLVEKFSKFGKIA-SLLIARDENGTSRGFG 234
+ SP+ T NL++ N+ S + + LVE F FGKI + ++A + +++G+G
Sbjct: 479 VESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYG 538
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS 294
F+ F + + A +A+ AMNG+++G +++ A ++ K R+
Sbjct: 539 FIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRL------ 592
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
Y+ N+ +T +++ F+ G IT KV+ +N + V ++ A KAV
Sbjct: 593 --YITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYADAPSAIKAVQHM 643
Query: 355 HGYMLHRKPLYV 366
GYM+ K L V
Sbjct: 644 DGYMVEGKRLVV 655
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 111/414 (26%), Positives = 184/414 (44%), Gaps = 33/414 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++LYV ++ + +L + F F + RV D T + YG++ F A +AI
Sbjct: 494 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 553
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGV--------ANLFVKNLIESIDNVRLQEMFQNF 123
N + G+M+ + + P A S V + L++ NL S+ ++ +F F
Sbjct: 554 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 613
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
G I KV + + + V + SA A+++++G V KR+ V R +
Sbjct: 614 GQIT--KVLMNLE-----YSLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNAS 666
Query: 184 -----PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
P NL++ + S +TE+ ++ F FG++ + R + +G V F
Sbjct: 667 QAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQR-----YGMVRF 721
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAER---EQILRHQFEEKRKERILKYKGSN 295
DNP A A++ ++G IG +L A AE + L Q + +I +N
Sbjct: 722 DNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQI---DMTN 778
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTF 354
+YV ++ V +E L F CG IT AKV+ + G++KGFGFV F+ A+ A+
Sbjct: 779 LYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHM 838
Query: 355 HGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANV-IPSGYPSLYY 407
+GY L L V IA D + + H + + A V IP+ Y YY
Sbjct: 839 NGYPLDGHVLEVRIAGVHPDAMSSYMAHFYSHFTMHDPAKAAVGIPTSYWPHYY 892
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 176/392 (44%), Gaps = 54/392 (13%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P T A LYV +L + L F F + + +V KD TTG S YG+V + SPH
Sbjct: 385 PSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPH 444
Query: 65 DAIRAIEVKNHTQLHGKMLRISWS----------CRDPDARKS----GVANLFVKNLIES 110
A A+ N + G+ + + S P ++ ++NL+V N+ S
Sbjct: 445 HAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSS 504
Query: 111 IDNVRLQEMFQNFGNIISCKVATSEDGKS-KGHGFVQFETEESANAAIENLNGTTVGDKR 169
ID +L E+F FG I +V D S KG+GF++F ESA AI +NG VG +
Sbjct: 505 IDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEM 564
Query: 170 IYVGRFIKKSDRVLP-SPAAKY-----------TNLFMKNLDSDVTEEHLVEKFSKFGKI 217
I V RV SP+A + L++ NL +T + +V F+ FG+I
Sbjct: 565 IIV--------RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQI 616
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
+L+ + + V + + A +A++ M+G ++ K L +R ++
Sbjct: 617 TKVLMNLE-------YSLVWYADAPSAIKAVQHMDGYMVEGKRLV-------VKRSELCT 662
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ + I + +N+YV + +T+++ F G + A++ R ++ +G
Sbjct: 663 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQR-----YG 717
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
V F +P A+ A++ GY + L V +A
Sbjct: 718 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVA 749
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 11/181 (6%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL++ NL + V L+E F FG+I + D G S+G+GFV + +P A A++
Sbjct: 297 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 356
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG ++ + L A + + ++ KE + + +YV N+ + +
Sbjct: 357 RMNGRLVEGRALEVRVAGFPSSEDNS-----QQPSKETDM----AKLYVCNLSLSMNTDR 407
Query: 310 LKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L F G +T+AKV +D G++KG+GFV +SSP A++AV +G ++ + + V +
Sbjct: 408 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 467
Query: 369 A 369
+
Sbjct: 468 S 468
>gi|328851168|gb|EGG00325.1| hypothetical protein MELLADRAFT_28015 [Melampsora larici-populina
98AG31]
Length = 223
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 121/219 (55%), Gaps = 14/219 (6%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVG+L DV +L + FS+ + + RVC D T + YGYV++ +P +A A+
Sbjct: 1 SLYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALRE 60
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
NH L GK +R+ S ANLF+KNL +S + L + F+ FG I+S K++
Sbjct: 61 FNHINLKGKPIRVMRSYSGKPKEFPSEANLFIKNLPKSFTPINLHDSFERFGKILSSKIS 120
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNG--TTVGD-------KRIYVGRFIKKSDRVL 183
+ G SKG+G++QFE + +N AI N N + D K++ V ++K DR
Sbjct: 121 FDQLGNSKGYGYIQFENPKDSNEAILNSNDFQFDIKDEEESKNMKKLKVTSYVKPEDR-- 178
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222
K+TN+F +NL D TEE + S+FGKI SL++
Sbjct: 179 ---KPKFTNVFFRNLPLDFTEESFSKYASEFGKITSLIL 214
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENL 160
L+V NL + ++ L +F +I+ +V K +G+G+V + T E A+ A+
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASL 220
N + K I V R + PS A NLF+KNL T +L + F +FGKI S
Sbjct: 62 NHINLKGKPIRVMRSYSGKPKEFPSEA----NLFIKNLPKSFTPINLHDSFERFGKILSS 117
Query: 221 LIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
I+ D+ G S+G+G++ F+NP D+ A+ N K ++ KK + ++
Sbjct: 118 KISFDQLGNSKGYGYIQFENPKDSNEAILNSNDFQFDIKDEEESKNMKKLKVTSYVK--- 174
Query: 281 EEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITS 322
E RK + +NV+ +N+ D T+E + S+ G ITS
Sbjct: 175 PEDRKPKF-----TNVFFRNLPLDFTEESFSKYASEFGKITS 211
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
L++ NL DV + L+ FS+ + + + D RG+G+V++ P++A AL
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N + K + R+ +E F + +N+++KN+ T L
Sbjct: 62 NHINLKGKPIRVMRSYSGKPKE------FPSE----------ANLFIKNLPKSFTPINLH 105
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAV 351
F + G I S+K+ D+ G +KG+G++ F +P+++++A+
Sbjct: 106 DSFERFGKILSSKISFDQLGNSKGYGYIQFENPKDSNEAI 145
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 11/145 (7%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P + A+L++ +L T L D+F F + S ++ D G S YGY+ F +P
Sbjct: 81 PKEFPSEANLFIKNLPKSFTPINLHDSFERFGKILSSKISFDQL-GNSKGYGYIQFENPK 139
Query: 65 DAIRAIEVKNHTQL---------HGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVR 115
D+ AI N Q + K L+++ + P+ RK N+F +NL
Sbjct: 140 DSNEAILNSNDFQFDIKDEEESKNMKKLKVTSYVK-PEDRKPKFTNVFFRNLPLDFTEES 198
Query: 116 LQEMFQNFGNIISCKVATSEDGKSK 140
+ FG I S + K+K
Sbjct: 199 FSKYASEFGKITSLILNPINKSKAK 223
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN-KGFGFVCFSSPEEASKAVNTF 354
+YV N+ DDV ++L FSQ + +A+V D +G+G+V +++PEEA A+ F
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 355 HGYMLHRKPLYV 366
+ L KP+ V
Sbjct: 62 NHINLKGKPIRV 73
>gi|388502742|gb|AFK39437.1| unknown [Lotus japonicus]
Length = 139
Score = 137 bits (344), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/89 (68%), Positives = 77/89 (86%)
Query: 170 IYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGT 229
IYVGRF+KKS+R+LP P A+YTNL+MK+LD D+TE L EKFS FGKI SL I++DENG
Sbjct: 37 IYVGRFVKKSERILPGPDARYTNLYMKSLDLDITEALLKEKFSSFGKIVSLTISKDENGM 96
Query: 230 SRGFGFVNFDNPDDARRALEAMNGSVIGS 258
S+GFGFVN++N DDA+RALEAM+G+ +GS
Sbjct: 97 SKGFGFVNYENSDDAKRALEAMDGTQLGS 125
Score = 62.8 bits (151), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEE 151
PDAR + NL++K+L I L+E F +FG I+S ++ E+G SKG GFV +E +
Sbjct: 53 PDARYT---NLYMKSLDLDITEALLKEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSD 109
Query: 152 SANAAIENLNGTTVG 166
A A+E ++GT +G
Sbjct: 110 DAKRALEAMDGTQLG 124
Score = 62.4 bits (150), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 283 KRKERIL---KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFV 339
K+ ERIL + +N+Y+K++D D+T+ LK FS G I S + +DE G++KGFGFV
Sbjct: 44 KKSERILPGPDARYTNLYMKSLDLDITEALLKEKFSSFGKIVSLTISKDENGMSKGFGFV 103
Query: 340 CFSSPEEASKAVNTFHGYML 359
+ + ++A +A+ G L
Sbjct: 104 NYENSDDAKRALEAMDGTQL 123
Score = 48.1 bits (113), Expect = 0.014, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 3 VVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS 62
++P +LY+ L D+T+ L + FS F + S+ + KD G S +G+VN+ +
Sbjct: 49 ILPGPDARYTNLYMKSLDLDITEALLKEKFSSFGKIVSLTISKDE-NGMSKGFGFVNYEN 107
Query: 63 PHDAIRAIEVKNHTQLHGKMLRISWSC 89
DA RA+E + TQL G S+ C
Sbjct: 108 SDDAKRALEAMDGTQL-GSFFFASFYC 133
>gi|331224641|ref|XP_003324992.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309303982|gb|EFP80573.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 306
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 144/273 (52%), Gaps = 14/273 (5%)
Query: 10 TPA--SLYVGDLHPDVTDGELFDAFSEFKSLASVRVC--KDSTTGRSTCYGYVNFLSPHD 65
TPA S+YVGDL P++T+ +L FS+ + +R+ K +T R Y YV + S
Sbjct: 24 TPAEYSVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRR-AYAYVTYSSADA 82
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
A AI N T+ GK R+ S A+ AN+FVK+L + + + F +FG
Sbjct: 83 ATAAIREFNQTEFLGKPCRVMKSIHGA-AKGLSEANVFVKHLPAKLSAIAFHDTFADFGE 141
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV----GDKRIYVGRFIKKSDR 181
++S K+A KG+GFVQ+ T E A AI NG+T+ K I FIKK +R
Sbjct: 142 VLSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATKPIKTSLFIKKENR 201
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
++ + ++ N+F +NL + +T E + +SK+G I S ++ ++G G GF NF+ P
Sbjct: 202 IV---SREFKNVFFRNLSTKITLEKFKQTWSKYGVITSAFLSLGKDGKPTGTGFANFEKP 258
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
A + ++ +V +A RA ++ERE+
Sbjct: 259 SAAAKVVKVTQKKKAPGRV-HAVRALTRSERER 290
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 119/255 (46%), Gaps = 28/255 (10%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNI--ISCKVATSEDGKSKGHGFVQFETEESANAAIE 158
+++V +L I +L ++F + I K+ + + +V + + ++A AAI
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPS--PAAK---YTNLFMKNLDSDVTEEHLVEKFSK 213
N T F+ K RV+ S AAK N+F+K+L + ++ + F+
Sbjct: 89 EFNQT----------EFLGKPCRVMKSIHGAAKGLSEANVFVKHLPAKLSAIAFHDTFAD 138
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG++ S +A D +G+GFV + + A++A+ NGS + + A K +
Sbjct: 139 FGEVLSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVE-----GATKPIKTS 193
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+ K++ RI+ + NV+ +N+ +T E+ K +S+ G ITSA + + G
Sbjct: 194 LFI------KKENRIVSREFKNVFFRNLSTKITLEKFKQTWSKYGVITSAFLSLGKDGKP 247
Query: 334 KGFGFVCFSSPEEAS 348
G GF F P A+
Sbjct: 248 TGTGFANFEKPSAAA 262
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 89/193 (46%), Gaps = 29/193 (15%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS--RGFGFVNFDNPDDARRALE 249
++++ +L ++TEE L + FS+ + + I + T R + +V + + D A A+
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 250 AMNGS-VIG--SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
N + +G +V+ + K E +NV+VK++ ++
Sbjct: 89 EFNQTEFLGKPCRVMKSIHGAAKGLSE--------------------ANVFVKHLPAKLS 128
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH----RK 362
F+ G + S+K+ D + KG+GFV +++ E+A KA+ +G L K
Sbjct: 129 AIAFHDTFADFGEVLSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATK 188
Query: 363 PLYVAIAQRKEDR 375
P+ ++ +KE+R
Sbjct: 189 PIKTSLFIKKENR 201
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 180/373 (48%), Gaps = 34/373 (9%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYVG+L V +L + F F + RV D TG S YG+V + P A AI+
Sbjct: 210 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 269
Query: 73 KNHTQLHGKMLRI-------SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
N + G+ L + S ++++ +A L+V NL S++ RL +F FG
Sbjct: 270 MNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGE 329
Query: 126 IISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV---GRFIKKSDR 181
+ + KVA G SKG+GFVQ+ + A A+ +LNG V ++I V G +
Sbjct: 330 VTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNS 389
Query: 182 VLPSPAAKYT-------NLFMKNLDSDVTEEHLVEKFSKFGKIA-SLLIARDENGTSRGF 233
+ SP+ T NL++ N+ S + + LVE F FGKI + ++A + +++G+
Sbjct: 390 AVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGY 449
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
GF+ F + + A +A+ AMNG+++G +++ A ++ K R+
Sbjct: 450 GFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRL----- 504
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
Y+ N+ +T +++ F+ G IT KV+ +N + V ++ A KAV
Sbjct: 505 ---YITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYADAPSAIKAVQH 554
Query: 354 FHGYMLHRKPLYV 366
GYM+ K L V
Sbjct: 555 MDGYMVEGKRLVV 567
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 186/418 (44%), Gaps = 41/418 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++LYV ++ + +L + F F + RV D T + YG++ F A +AI
Sbjct: 406 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 465
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGV--------ANLFVKNLIESIDNVRLQEMFQNF 123
N + G+M+ + + P A S V + L++ NL S+ ++ +F F
Sbjct: 466 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 525
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
G I KV + + + V + SA A+++++G V KR+ V K+S+
Sbjct: 526 GQIT--KVLMNLE-----YSLVWYADAPSAIKAVQHMDGYMVEGKRLVV----KRSELCT 574
Query: 184 ---------PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
P NL++ + S +TE+ ++ F FG++ + R + +G
Sbjct: 575 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQR-----YG 629
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER---EQILRHQFEEKRKERILKY 291
V FDNP A A++ ++G IG +L A AE + L Q + +I
Sbjct: 630 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQI--- 686
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+N+YV ++ V +E L F CG IT AKV+ + G++KGFGFV F+ A+ A
Sbjct: 687 DMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 746
Query: 351 VNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANV-IPSGYPSLYY 407
+ +GY L L V IA D + + H + + A V IP+ Y YY
Sbjct: 747 LTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFYSHFTMHDPAKAAVGIPTSYWPHYY 804
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 176/392 (44%), Gaps = 54/392 (13%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P T A LYV +L + L F F + + +V KD TTG S YG+V + SPH
Sbjct: 297 PSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPH 356
Query: 65 DAIRAIEVKNHTQLHGKMLRISWS----------CRDPDARKS----GVANLFVKNLIES 110
A A+ N + G+ + + S P ++ ++NL+V N+ S
Sbjct: 357 HAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSS 416
Query: 111 IDNVRLQEMFQNFGNIISCKVATSEDGKS-KGHGFVQFETEESANAAIENLNGTTVGDKR 169
ID +L E+F FG I +V D S KG+GF++F ESA AI +NG VG +
Sbjct: 417 IDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEM 476
Query: 170 IYVGRFIKKSDRVLP-SPAAKY-----------TNLFMKNLDSDVTEEHLVEKFSKFGKI 217
I V RV SP+A + L++ NL +T + +V F+ FG+I
Sbjct: 477 IIV--------RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQI 528
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
+L+ + + V + + A +A++ M+G ++ K L +R ++
Sbjct: 529 TKVLMNLE-------YSLVWYADAPSAIKAVQHMDGYMVEGKRLV-------VKRSELCT 574
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
+ + I + +N+YV + +T+++ F G + A++ R ++ +G
Sbjct: 575 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQR-----YG 629
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
V F +P A+ A++ GY + L V +A
Sbjct: 630 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVA 661
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 11/181 (6%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL++ NL + V L+E F FG+I + D G S+G+GFV + +P A A++
Sbjct: 209 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 268
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG ++ + L A + + ++ KE + + +YV N+ + +
Sbjct: 269 RMNGRLVEGRALEVRVAGFPSSEDNS-----QQPSKETDM----AKLYVCNLSLSMNTDR 319
Query: 310 LKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L F G +T+AKV +D G++KG+GFV +SSP A++AV +G ++ + + V +
Sbjct: 320 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 379
Query: 369 A 369
+
Sbjct: 380 S 380
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 139/276 (50%), Gaps = 22/276 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYVG+LHP VTD L + FS + +++ KD TG S YG+V FL A A++
Sbjct: 23 ALYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMALQS 82
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVA--NLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N LHG+ LR++W+ + D R+ + +FV +L I++ L E FQ+ G +
Sbjct: 83 LNGRVLHGQELRVNWAFQ-KDQREDSASQFQIFVGDLASDINDKLLCEAFQSCGCADARV 141
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA-- 188
+ G+SKG+GFV F+T A A+ ++GT +G +RI G K + S AA
Sbjct: 142 MWDHNTGRSKGYGFVSFKTRADAEQALSQMSGTMLGSRRIRCGWAQHKQENSQASFAAVD 201
Query: 189 ------------KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236
+ N+++ NL DV++ L S+FG + + I R G+ F
Sbjct: 202 RVSTLSRAQADPENANVYVGNLAPDVSDAELQTAVSQFGAVLDVKIYR-----KGGYAFA 256
Query: 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
F + DA RA+ ++G +G K L + + +A +
Sbjct: 257 QFASHADAVRAIVGLSGQNLGGKALKCSWGRHQARK 292
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 17/269 (6%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENL 160
L+V NL + + LQE+F G + K+ + G S G+GFVQF +A+ A+++L
Sbjct: 24 LYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMALQSL 83
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASL 220
NG + + + V +K R +A +F+ +L SD+ ++ L E F G +
Sbjct: 84 NGRVLHGQELRVNWAFQKDQR---EDSASQFQIFVGDLASDINDKLLCEAFQSCGCADAR 140
Query: 221 LIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
++ G S+G+GFV+F DA +AL M+G+++GS+ + AQ K E Q F
Sbjct: 141 VMWDHNTGRSKGYGFVSFKTRADAEQALSQMSGTMLGSRRIRCGWAQHKQENSQA---SF 197
Query: 281 EEKRKERILKY-----KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG 335
+ L + +NVYV N+ DV+D EL+ SQ G + K+ R KG G
Sbjct: 198 AAVDRVSTLSRAQADPENANVYVGNLAPDVSDAELQTAVSQFGAVLDVKIYR--KG---G 252
Query: 336 FGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ F F+S +A +A+ G L K L
Sbjct: 253 YAFAQFASHADAVRAIVGLSGQNLGGKAL 281
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A++YVG+L PDV+D EL A S+F ++ V++ R Y + F S DA+RAI
Sbjct: 216 ANVYVGNLAPDVSDAELQTAVSQFGAVLDVKIY------RKGGYAFAQFASHADAVRAIV 269
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSG 98
+ L GK L+ SW ARK G
Sbjct: 270 GLSGQNLGGKALKCSWG--RHQARKGG 294
>gi|323650114|gb|ADX97143.1| polyadenylate-binding protein 1 [Perca flavescens]
Length = 263
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 136/282 (48%), Gaps = 39/282 (13%)
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGS 393
K FVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+RQAHL QY Q MA +
Sbjct: 2 KVLAFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMATVRAV 61
Query: 394 SANVI-------PSGY-----P-----SLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRA 436
V+ PSGY P + YY+ ++Q+ P P W
Sbjct: 62 PNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYSA--NQLAQLRPSPR-----------WAT 108
Query: 437 NGFVPPTRPA-FQVSPLPVNPKHNR-QNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSN 494
G RP FQ P + P R Q + P M S + + +
Sbjct: 109 QGV----RPQHFQNMPNAMRPSAPRPQTFNAIRPTTTPNAQVPRMMASQRM---PTQALS 161
Query: 495 QQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGE 554
Q+ G S R + S + + + + MLAA P++QKQ+LGE
Sbjct: 162 QRPTGASATAAPVRAMPQHMASQPQVAMQQPAVHVQGQEPLTASMLAAAPPQEQKQMLGE 221
Query: 555 RLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVK 596
RL+PL++ P L KITGMLLE+DNSELL +LESPESL K
Sbjct: 222 RLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSK 263
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 230 SRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
++ FV F +P++A +A+ MNG ++ +K LY A AQ+K ER+ L +Q+ ++
Sbjct: 1 AKVLAFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 54
>gi|62897393|dbj|BAD96637.1| PABPC4 protein variant [Homo sapiens]
Length = 371
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/109 (58%), Positives = 83/109 (76%), Gaps = 1/109 (0%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASK 349
+Y+G N+Y+KN+DD + DE+L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+K
Sbjct: 1 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATK 59
Query: 350 AVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI 398
AV +G ++ KPLYVA+AQRKE+R+AHL QY Q +AG+ AN I
Sbjct: 60 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAI 108
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 56/72 (77%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA P++QKQ+LGERL+PL++ +L KITGMLLE+DNSELL +LESPESL KV+
Sbjct: 285 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 344
Query: 599 EAVQVLKLSEAK 610
EA VL+ AK
Sbjct: 345 EAAAVLQAHHAK 356
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KNLD + +E L ++FS FG I S + E+G S+GFGFV F +P++A +A+ M
Sbjct: 6 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEM 64
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
NG ++GSK LY A AQ+K ER+ L +Q+ ++
Sbjct: 65 NGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 96
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 7/104 (6%)
Query: 95 RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESAN 154
R GV NL++KNL ++ID+ +L++ F FG+I S KV EDG+SKG GFV F + E A
Sbjct: 1 RYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEAT 58
Query: 155 AAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNL 198
A+ +NG VG K +YV +K +R A TN +M+ +
Sbjct: 59 KAVTEMNGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRV 97
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LY+ +L + D +L FS F S+ S +V + GRS +G+V F SP +A +A+
Sbjct: 6 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 63
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL 107
N + K L ++ + R + RK+ + N +++ +
Sbjct: 64 MNGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRV 97
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 180/385 (46%), Gaps = 49/385 (12%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVG+L V +L + F F + RV D TG S YG+V + P A AI+
Sbjct: 298 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 357
Query: 74 NHTQLHGKMLRI-------SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N + G+ L + S ++++ +A L+V NL S++ RL +F FG +
Sbjct: 358 NGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEV 417
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
+ KVA G SKG+GFVQ+ + A A+ +LNG V ++I V + LP+
Sbjct: 418 TNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR--VSGIPSTLPN 475
Query: 186 PAAK-----------------------YTNLFMKNLDSDVTEEHLVEKFSKFGKIA-SLL 221
A + +NL++ N+ S + + LVE F FGKI + +
Sbjct: 476 SAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARV 535
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE 281
+A + +++G+GF+ F + + A +A+ AMNG+++G +++ A +
Sbjct: 536 VADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQ 595
Query: 282 EKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCF 341
+ K R+ Y+ N+ +T +++ F+ G IT KV+ +N + V +
Sbjct: 596 DINKSRL--------YITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVWY 640
Query: 342 SSPEEASKAVNTFHGYMLHRKPLYV 366
+ A+KAV GYM+ K L V
Sbjct: 641 ADAPSATKAVQHMDGYMVEGKRLVV 665
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 111/414 (26%), Positives = 183/414 (44%), Gaps = 33/414 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++LYV ++ + +L + F F + RV D T + YG++ F A +AI
Sbjct: 504 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 563
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGV--------ANLFVKNLIESIDNVRLQEMFQNF 123
N + G+M+ + + P A S V + L++ NL S+ ++ +F F
Sbjct: 564 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 623
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
G I KV + + + V + SA A+++++G V KR+ V R +
Sbjct: 624 GQIT--KVLMNLE-----YSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNAS 676
Query: 184 -----PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
P NL++ + S +TE+ ++ F FG++ + R + +G V F
Sbjct: 677 QAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQR-----YGMVRF 731
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI---LRHQFEEKRKERILKYKGSN 295
DNP A A++ ++G IG +L A AE L Q + +I +N
Sbjct: 732 DNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQI---DMTN 788
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTF 354
+YV ++ V +E L F CG IT AKV+ + G++KGFGFV F+ A+ A+
Sbjct: 789 LYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHM 848
Query: 355 HGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANV-IPSGYPSLYY 407
+GY L L V IA D + + H + + A V IP+ Y YY
Sbjct: 849 NGYPLDGHVLEVRIAGVHPDAMSSYMAHFYSHFTMHDPAKAAVGIPTSYWPHYY 902
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 107/403 (26%), Positives = 176/403 (43%), Gaps = 65/403 (16%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P T A LYV +L + L F F + + +V KD TTG S YG+V + SPH
Sbjct: 384 PSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPH 443
Query: 65 DAIRAIEVKNHTQLHGKMLRISWS----------CRDPD-ARKSGV-------------- 99
A A+ N + G+ + + S P R S V
Sbjct: 444 HAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDM 503
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKS-KGHGFVQFETEESANAAIE 158
+NL+V N+ SID +L E+F FG I +V D S KG+GF++F ESA AI
Sbjct: 504 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 563
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLP-SPAAKY-----------TNLFMKNLDSDVTEEH 206
+NG VG + I V RV SP+A + L++ NL +T +
Sbjct: 564 AMNGALVGGEMIIV--------RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADK 615
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
+V F+ FG+I +L+ + + V + + A +A++ M+G ++ K L
Sbjct: 616 MVNLFAPFGQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLV---- 664
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+R ++ + + I + +N+YV + +T+++ F G + A++
Sbjct: 665 ---VKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMF 721
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
R ++ +G V F +P A+ A++ GY + L V +A
Sbjct: 722 RFQR-----YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVA 759
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 11/181 (6%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL++ NL + V L+E F FG+I + D G S+G+GFV + +P A A++
Sbjct: 296 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 355
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG ++ + L A + + ++ KE + + +YV N+ + +
Sbjct: 356 RMNGRLVEGRALEVRVAGFPSSEDNS-----QQPSKETDM----AKLYVCNLSLSMNTDR 406
Query: 310 LKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L F G +T+AKV +D G++KG+GFV +SSP A++AV +G ++ + + V +
Sbjct: 407 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 466
Query: 369 A 369
+
Sbjct: 467 S 467
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 180/385 (46%), Gaps = 49/385 (12%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVG+L V +L + F F + RV D TG S YG+V + P A AI+
Sbjct: 295 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 354
Query: 74 NHTQLHGKMLRI-------SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
N + G L++ S ++++ +A L+V NL S++ RL +F FG +
Sbjct: 355 NGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEV 414
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
+ KVA G SKG+GFVQ+ + A A+ +LNG V ++I V + LP+
Sbjct: 415 TNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR--VSGIPSTLPN 472
Query: 186 PAAK-----------------------YTNLFMKNLDSDVTEEHLVEKFSKFGKIA-SLL 221
A + +NL++ N+ S + + LVE F FGKI + +
Sbjct: 473 SAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARV 532
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE 281
+A + +++G+GF+ F + + A +A+ AMNG+++G +++ A +
Sbjct: 533 VADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTTQ 592
Query: 282 EKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCF 341
+ K R+ Y+ N+ +T +++ F+ G IT KV+ +N + V +
Sbjct: 593 DINKSRL--------YITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVWY 637
Query: 342 SSPEEASKAVNTFHGYMLHRKPLYV 366
+ A+KAV GYM+ K L V
Sbjct: 638 ADAPSATKAVQHMDGYMVEGKRLVV 662
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 111/414 (26%), Positives = 183/414 (44%), Gaps = 33/414 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++LYV ++ + +L + F F + RV D T + YG++ F A +AI
Sbjct: 501 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 560
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGV--------ANLFVKNLIESIDNVRLQEMFQNF 123
N + G+M+ + + P A S V + L++ NL S+ ++ +F F
Sbjct: 561 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 620
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
G I KV + + + V + SA A+++++G V KR+ V R +
Sbjct: 621 GQIT--KVLMNLE-----YSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNAS 673
Query: 184 -----PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
P NL++ + S +TE+ ++ F FG++ + R + +G V F
Sbjct: 674 QAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQR-----YGMVRF 728
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI---LRHQFEEKRKERILKYKGSN 295
DNP A A++ ++G IG +L A AE L Q + +I +N
Sbjct: 729 DNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQI---DMTN 785
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTF 354
+YV ++ V +E L F CG IT AKV+ + G++KGFGFV F+ A+ A+
Sbjct: 786 LYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHM 845
Query: 355 HGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANV-IPSGYPSLYY 407
+GY L L V IA D + + H + + A V IP+ Y YY
Sbjct: 846 NGYPLDGHVLEVRIAGVHPDAMSSYMAHFYSHFTMHDPAKAAVGIPTSYWPHYY 899
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 107/403 (26%), Positives = 176/403 (43%), Gaps = 65/403 (16%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P T A LYV +L + L F F + + +V KD TTG S YG+V + SPH
Sbjct: 381 PSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPH 440
Query: 65 DAIRAIEVKNHTQLHGKMLRISWS----------CRDPD-ARKSGV-------------- 99
A A+ N + G+ + + S P R S V
Sbjct: 441 HAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDM 500
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKS-KGHGFVQFETEESANAAIE 158
+NL+V N+ SID +L E+F FG I +V D S KG+GF++F ESA AI
Sbjct: 501 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 560
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLP-SPAAKY-----------TNLFMKNLDSDVTEEH 206
+NG VG + I V RV SP+A + L++ NL +T +
Sbjct: 561 AMNGALVGGEMIIV--------RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADK 612
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
+V F+ FG+I +L+ + + V + + A +A++ M+G ++ K L
Sbjct: 613 MVNLFAPFGQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLV---- 661
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+R ++ + + I + +N+YV + +T+++ F G + A++
Sbjct: 662 ---VKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMF 718
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
R ++ +G V F +P A+ A++ GY + L V +A
Sbjct: 719 RFQR-----YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVA 756
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL++ NL + V L+E F FG+I + D G S+G+GFV + +P A A++
Sbjct: 293 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 352
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG ++ L R E ++ KE + + +YV N+ + +
Sbjct: 353 RMNGRLVEGTAL-KVRVTGFPSSED----NSQQPSKETDM----AKLYVCNLSLSMNTDR 403
Query: 310 LKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L F G +T+AKV +D G++KG+GFV +SSP A++AV +G ++ + + V +
Sbjct: 404 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 463
Query: 369 A 369
+
Sbjct: 464 S 464
>gi|145501335|ref|XP_001436649.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403791|emb|CAK69252.1| unnamed protein product [Paramecium tetraurelia]
Length = 620
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 187/374 (50%), Gaps = 57/374 (15%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L+V DL +T+ +L+ F +F ++ V++ + G+S Y ++ F S +A +A E
Sbjct: 57 LHVSDLEEGITEEQLYVEFRKFGQISFVKLHRYPFIGKSKHYAFIYFSSQEEARKAKEAM 116
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N+ QL + +RI++ ANLF ++ +L+E F +G ++S K++T
Sbjct: 117 NYKQLLREPMRITYI-----QEYEKDANLFFAGFELTVTLKQLEEFFLKWGQVVSVKLST 171
Query: 134 SEDGKSKGHGFVQFETEESANAAI-ENLNGTTVGDK--RIYVGRFIKK--SDRVLPSPAA 188
E+ KS+G+G+VQFE +E AN + E+ +GT V ++ +I + RF+KK +DR
Sbjct: 172 DENKKSRGYGWVQFEKKEQANELLAESTDGTIVYNENTKIIIKRFVKKGQTDR-----ED 226
Query: 189 KYTNLFMKNL----------DSDVTE-------EHLVEKFSKFGKIASLLIARDENGTSR 231
K NL++KN +++V E E L E F +G+I S+L+ D +
Sbjct: 227 KRNNLYIKNFWPTLDNYDLENAEVRESLEKEMREKLNEWFKGYGQIVSILVKIDVERKA- 285
Query: 232 GFGFVNFDNPDDARRALEAMNGS-----VIGSKVLYAARAQKKAEREQILRHQFEEKRKE 286
F FV+F+ DA+ A + + + +++Y AQ K +R+Q +R
Sbjct: 286 PFAFVSFNRHQDAKEAQRELGTTQKRDPLSTGRMMYVGWAQTKTDRKQ--------QRDN 337
Query: 287 RILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF------GFVC 340
I +Y ++ +VT+E ++ +CG +++R EK + +GF G++
Sbjct: 338 NIF---AKYIYADHLSRNVTEEMIRTTLKECG-YGDIQMIRLEK-MQQGFQQIIRIGYIV 392
Query: 341 FSSPEEASKAVNTF 354
F +A+K V F
Sbjct: 393 FDQASDANKLVKNF 406
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTF 354
++V ++++ +T+E+L F + G I+ K+ R G +K + F+ FSS EEA KA
Sbjct: 57 LHVSDLEEGITEEQLYVEFRKFGQISFVKLHRYPFIGKSKHYAFIYFSSQEEARKAKEAM 116
Query: 355 HGYMLHRKPLYVAIAQRKE 373
+ L R+P+ + Q E
Sbjct: 117 NYKQLLREPMRITYIQEYE 135
>gi|14571650|emb|CAC42811.1| Poly(A)-binding protein cytoplasmic 5 [Cricetulus griseus]
Length = 177
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL P+VT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+K+L +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV 172
+G SKG+ +V F++ +AN AI ++NG + ++++YV
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 18/171 (10%)
Query: 197 NLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSV 255
+L +VTE+ L +KF G + I RD + G+G+VNF P DA AL MN +
Sbjct: 24 DLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNFDL 83
Query: 256 IGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS 315
I K +Q +R+ K N+++K++D + + L FS
Sbjct: 84 INGKPFRLMWSQPD----------------DRLRKSGVGNIFIKHLDKSIDNRTLFYLFS 127
Query: 316 QCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
G I S KV+ D+ G +KG+ +V F S A++A+ +G L+ + +YV
Sbjct: 128 AFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+K+LD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKHLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRTLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQ 174
Query: 261 LYA 263
+Y
Sbjct: 175 VYV 177
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 181/386 (46%), Gaps = 49/386 (12%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYVG+L V +L + F F + RV D TG S YG+V + P A AI+
Sbjct: 210 NLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKR 269
Query: 73 KNHTQLHGKMLRI-------SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
N + G L++ S ++++ +A L+V NL S++ RL +F FG
Sbjct: 270 MNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGE 329
Query: 126 IISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP 184
+ + KVA G SKG+GFVQ+ + A A+ +LNG V ++I V + LP
Sbjct: 330 VTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR--VSGIPSTLP 387
Query: 185 SPAAK-----------------------YTNLFMKNLDSDVTEEHLVEKFSKFGKIA-SL 220
+ A + +NL++ N+ S + + LVE F FGKI +
Sbjct: 388 NSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHAR 447
Query: 221 LIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
++A + +++G+GF+ F + + A +A+ AMNG+++G +++ A
Sbjct: 448 VVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLSPSASISAVQTT 507
Query: 281 EEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVC 340
++ K R+ Y+ N+ +T +++ F+ G IT KV+ +N + V
Sbjct: 508 QDINKSRL--------YITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVW 552
Query: 341 FSSPEEASKAVNTFHGYMLHRKPLYV 366
++ A+KAV GYM+ K L V
Sbjct: 553 YADAPSATKAVQHMDGYMVEGKRLVV 578
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 186/418 (44%), Gaps = 41/418 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
++LYV ++ + +L + F F + RV D T + YG++ F A +AI
Sbjct: 417 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 476
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGV--------ANLFVKNLIESIDNVRLQEMFQNF 123
N + G+M+ + + P A S V + L++ NL S+ ++ +F F
Sbjct: 477 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 536
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
G I KV + + + V + SA A+++++G V KR+ V K+S+
Sbjct: 537 GQIT--KVLMNLE-----YSLVWYADAPSATKAVQHMDGYMVEGKRLVV----KRSELCT 585
Query: 184 ---------PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
P NL++ + S +TE+ ++ F FG++ + R + +G
Sbjct: 586 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQR-----YG 640
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER---EQILRHQFEEKRKERILKY 291
V FDNP A A++ ++G IG +L A AE + L Q + +I
Sbjct: 641 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQI--- 697
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKA 350
+N+YV ++ V +E L F CG IT AKV+ + G++KGFGFV F+ A+ A
Sbjct: 698 DMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 757
Query: 351 VNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANV-IPSGYPSLYY 407
+ +GY L L V IA D + + H + + A V IP+ Y YY
Sbjct: 758 LTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFYSHFTMHDPAKAAVGIPTSYWPHYY 815
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 107/403 (26%), Positives = 176/403 (43%), Gaps = 65/403 (16%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P T A LYV +L + L F F + + +V KD TTG S YG+V + SPH
Sbjct: 297 PSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPH 356
Query: 65 DAIRAIEVKNHTQLHGKMLRISWS----------CRDPD-ARKSGV-------------- 99
A A+ N + G+ + + S P R S V
Sbjct: 357 HAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDM 416
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKS-KGHGFVQFETEESANAAIE 158
+NL+V N+ SID +L E+F FG I +V D S KG+GF++F ESA AI
Sbjct: 417 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 476
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLP-SPAAKY-----------TNLFMKNLDSDVTEEH 206
+NG VG + I V RV SP+A + L++ NL +T +
Sbjct: 477 AMNGALVGGEMIIV--------RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADK 528
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
+V F+ FG+I +L+ + + V + + A +A++ M+G ++ K L
Sbjct: 529 MVNLFAPFGQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLV---- 577
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+R ++ + + I + +N+YV + +T+++ F G + A++
Sbjct: 578 ---VKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMF 634
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
R ++ +G V F +P A+ A++ GY + L V +A
Sbjct: 635 RFQR-----YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVA 672
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL++ NL + V L+E F FG+I + D G S+G+GFV + +P A A++
Sbjct: 209 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 268
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG ++ L R E ++ KE + + +YV N+ + +
Sbjct: 269 RMNGRLVEGTAL-KVRVTGFPSSED----NSQQPSKETDM----AKLYVCNLSLSMNTDR 319
Query: 310 LKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L F G +T+AKV +D G++KG+GFV +SSP A++AV +G ++ + + V +
Sbjct: 320 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 379
Query: 369 A 369
+
Sbjct: 380 S 380
>gi|123430889|ref|XP_001307992.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889649|gb|EAX95062.1| hypothetical protein TVAG_428650 [Trichomonas vaginalis G3]
Length = 537
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 19/236 (8%)
Query: 55 YGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD-PDARKSGVANLFVKNLIESIDN 113
+ +V F +P A++AI+ N+T+L+G + I+ + ++ + KSG NL+V+ L I+
Sbjct: 48 FAFVTFDTPESALKAIKEFNYTKLNGSPIVITPTTQEYQNLIKSGEGNLYVRGLDVYIEV 107
Query: 114 VRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG 173
+L E+FQ +G +ISCK+ T DG +KG+ +VQF A A LN + K+I V
Sbjct: 108 SQLHELFQTYGEVISCKLPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISVE 167
Query: 174 RFIKKSDRVLPSPAAK----------YTNLFMKNLDSDV-TEEHLVEKFSKFGKIASLLI 222
+ KK SPA+ +TN+F++NL S+V E L FS+FG + S +
Sbjct: 168 PYKKKERPQKTSPASNPRGAPASDDVFTNIFIRNLPSNVRNETDLGNLFSEFGVVISTKM 227
Query: 223 ARDENGTSRGF-GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
D GF GF N + D A RA++A+NG VI KVL RA K ER + R
Sbjct: 228 LPD------GFSGFCNMIDHDSAVRAIQALNGKVIDGKVLEVVRAISKEERMGVPR 277
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 129/274 (47%), Gaps = 16/274 (5%)
Query: 104 VKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
+ NL I ++ + Q G +++ + ++G FV F+T ESA AI+ N T
Sbjct: 13 ISNLPSGITTDFIKILLQECGEVVNVTLKERQNGN---FAFVTFDTPESALKAIKEFNYT 69
Query: 164 TVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIA 223
+ I + ++ ++ S NL+++ LD + L E F +G++ S +
Sbjct: 70 KLNGSPIVITPTTQEYQNLIKSGEG---NLYVRGLDVYIEVSQLHELFQTYGEVISCKLP 126
Query: 224 RDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
+G ++G+ +V F +P+DA +A +N +VI K + + KK ER Q
Sbjct: 127 TGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKI-SVEPYKKKERPQKTSPA-SNP 184
Query: 284 RKERILKYKGSNVYVKNIDDDVTDE-ELKAHFSQCGTITSAKVMRDEKGINKGF-GFVCF 341
R +N++++N+ +V +E +L FS+ G + S K++ D GF GF
Sbjct: 185 RGAPASDDVFTNIFIRNLPSNVRNETDLGNLFSEFGVVISTKMLPD------GFSGFCNM 238
Query: 342 SSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
+ A +A+ +G ++ K L V A KE+R
Sbjct: 239 IDHDSAVRAIQALNGKVIDGKVLEVVRAISKEER 272
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 30/203 (14%)
Query: 175 FIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
F + SD+V+ + NL S +T + + + G++ ++ + +NG F
Sbjct: 3 FEQSSDKVV----------HISNLPSGITTDFIKILLQECGEVVNVTLKERQNGN---FA 49
Query: 235 FVNFDNPDDARRALEAMNGSVI-GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
FV FD P+ A +A++ N + + GS ++ Q+ + ++K
Sbjct: 50 FVTFDTPESALKAIKEFNYTKLNGSPIVITPTTQEY----------------QNLIKSGE 93
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
N+YV+ +D + +L F G + S K+ G+NKG+ +V F P +A KA
Sbjct: 94 GNLYVRGLDVYIEVSQLHELFQTYGEVISCKLPTGTDGLNKGYAYVQFRDPNDAEKARVE 153
Query: 354 FHGYMLHRKPLYVAIAQRKEDRQ 376
+ +++ K + V ++KE Q
Sbjct: 154 LNDAVINGKKISVEPYKKKERPQ 176
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 22/202 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+LYV L + +L + F + + S ++ T G + Y YV F P+DA +A
Sbjct: 94 GNLYVRGLDVYIEVSQLHELFQTYGEVISCKL-PTGTDGLNKGYAYVQFRDPNDAEKARV 152
Query: 72 VKNHTQLHGKMLRI--------------SWSCRDPDARKSGVANLFVKNLIESIDN-VRL 116
N ++GK + + + + R A N+F++NL ++ N L
Sbjct: 153 ELNDAVINGKKISVEPYKKKERPQKTSPASNPRGAPASDDVFTNIFIRNLPSNVRNETDL 212
Query: 117 QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176
+F FG +IS K+ DG S GF +SA AI+ LNG + K + V R I
Sbjct: 213 GNLFSEFGVVISTKML--PDGFS---GFCNMIDHDSAVRAIQALNGKVIDGKVLEVVRAI 267
Query: 177 KKSDRV-LPSPAAKYTNLFMKN 197
K +R+ +P P ++ N
Sbjct: 268 SKEERMGVPRPVPGKSSYLAPN 289
>gi|432101459|gb|ELK29641.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 146
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 95/139 (68%), Gaps = 2/139 (1%)
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
MNG I KV+ AQK E++ L+ +FE+ ++ERI +Y+G N+Y+KN+DD V DE L
Sbjct: 1 MNGKDISGKVISVGCAQKTVEQQAELKWKFEQLKQERISRYQGVNLYIKNLDDTVGDENL 60
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ FS G+ITSAKVM E G +KGFGFVCFSSP EA KAV +G ++ KPLYVA+A+
Sbjct: 61 RKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSP-EAIKAVTKMNGCVMSSKPLYVALAR 118
Query: 371 RKEDRQAHLQLQYAQHMAG 389
R+ A+L Q Q +AG
Sbjct: 119 RRGKGSAYLTDQDMQWVAG 137
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
NL++KNLD V +E+L ++FS FG I S + E+G S+GFGFV F +P +A +A+
Sbjct: 44 VNLYIKNLDDTVGDENLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSP-EAIKAVTK 101
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQ 279
MNG V+ SK LY A A+++ + L Q
Sbjct: 102 MNGCVMSSKPLYVALARRRGKGSAYLTDQ 130
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153
+R GV NL++KNL +++ + L++ F FG+I S KV EDG+SKG GFV F + E A
Sbjct: 39 SRYQGV-NLYIKNLDDTVGDENLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPE-A 95
Query: 154 NAAIENLNGTTVGDKRIYV 172
A+ +NG + K +YV
Sbjct: 96 IKAVTKMNGCVMSSKPLYV 114
>gi|147835778|emb|CAN72942.1| hypothetical protein VITISV_011270 [Vitis vinifera]
Length = 185
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 84/118 (71%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +V D +L+D F++ ++ SVRVC+D +T RS YGYVN+ +P DA RA++V
Sbjct: 31 SLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDV 90
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N T L+GK LRI +S DP RKSG N+F+KNL + ID+ L + F FGNI+SCK
Sbjct: 91 LNFTPLNGKPLRIMYSHCDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCK 148
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +L+ +V + L + F++ G + S+ + RD S G+G+VN+ NP DA RAL+
Sbjct: 30 TSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 89
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+N + + K L +I+ + I K N+++KN+D + +
Sbjct: 90 VLNFTPLNGKPL------------RIMYSHCDPS----IRKSGTGNIFIKNLDKGIDHKA 133
Query: 310 LKAHFSQCGTITSAK 324
L FS G I S K
Sbjct: 134 LHDTFSAFGNILSCK 148
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEAS 348
++ +++YV +++ +V D +L F+Q G + S +V RD + G+G+V +S+P++A+
Sbjct: 26 QFVTTSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAA 85
Query: 349 KAVNTFHGYMLHRKPLYV 366
+A++ + L+ KPL +
Sbjct: 86 RALDVLNFTPLNGKPLRI 103
>gi|145498154|ref|XP_001435065.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402194|emb|CAK67668.1| unnamed protein product [Paramecium tetraurelia]
Length = 623
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 181/372 (48%), Gaps = 53/372 (14%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++ DL +T+ +LF F +F ++ V++ + G+S Y ++ F S +A +A E
Sbjct: 60 LHIADLEEGITEEQLFVEFRKFGQISFVKLHRYPFIGKSKHYAFIYFSSQEEARKAKEAM 119
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N+ QL + +RI++ ANLF ++ +L+E F +G ++S K++T
Sbjct: 120 NYKQLLREPMRITYI-----QEYEKDANLFFAGFELTVTLKQLEEFFLKWGQVVSVKLST 174
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVG---DKRIYVGRFIKK--SDRVLPSPAA 188
E+ KS+G+G+VQ+E +E ANA + + T+ ++ V RF+KK +DR
Sbjct: 175 DENKKSRGYGWVQYEKKEQANALLADSTDGTIAYNEKTKVIVKRFVKKGQTDR-----ED 229
Query: 189 KYTNLFMKNL-------DSDVTE----------EHLVEKFSKFGKIASLLIARDENGTSR 231
K NL++KN D D E E L E FS +G I S+L+ D +
Sbjct: 230 KRNNLYIKNFWPSLENYDLDNAEVRESLEKEMREKLNEWFSGYGSIVSILVKIDVERKA- 288
Query: 232 GFGFVNFDNPDDARRALEAMNGS-----VIGSKVLYAARAQKKAEREQILRHQFEEKRKE 286
F FV+F+ DA+ A + + + +++Y AQ K +R+Q ++
Sbjct: 289 PFAFVSFNRHQDAKEAQRTLGTTQKRDPLSTGRMMYVGWAQTKTDRKQ-------QRDNN 341
Query: 287 RILKYKGSNVYVKNIDDDVTDEELKAHFSQC--GTITSAKVMRDEKGINK--GFGFVCFS 342
KY +Y ++ +VT+E ++ +C G I + ++ + ++G + G++ F
Sbjct: 342 VFAKY----IYADHLSRNVTEEMIRTTLKECGYGDIQTIRLEKMQQGFQQIIRIGYIVFD 397
Query: 343 SPEEASKAVNTF 354
+A+K V F
Sbjct: 398 QASDANKLVKNF 409
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTF 354
+++ ++++ +T+E+L F + G I+ K+ R G +K + F+ FSS EEA KA
Sbjct: 60 LHIADLEEGITEEQLFVEFRKFGQISFVKLHRYPFIGKSKHYAFIYFSSQEEARKAKEAM 119
Query: 355 HGYMLHRKPLYVAIAQRKE 373
+ L R+P+ + Q E
Sbjct: 120 NYKQLLREPMRITYIQEYE 138
>gi|255720292|ref|XP_002556426.1| KLTH0H12958p [Lachancea thermotolerans]
gi|238942392|emb|CAR30564.1| KLTH0H12958p [Lachancea thermotolerans CBS 6340]
Length = 639
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 149/296 (50%), Gaps = 48/296 (16%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SL++GDL VT+ L AFS FK+LASV++C DS T +S YGY+NF S +A AIE
Sbjct: 94 SSLFIGDLDKGVTEKMLLHAFSGFKTLASVKICIDSETKKSLGYGYLNFTSAQEADEAIE 153
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL-IE--SIDNVRLQEMFQNFGNIIS 128
++ +L GK +RI S R+ RK+ N+F NL +E ++ E F+ +G ++S
Sbjct: 154 KFSYVKLFGKEVRIMPSMRNSYFRKNIGTNVFFTNLPLENPALTTRVFYESFRKYGRVLS 213
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG----RFIKKS----- 179
CK+ + K GFV FE++ SA AI++ N +I G + I+KS
Sbjct: 214 CKL-----DRRKNIGFVYFESDISAKKAIDDFNSREYFGNKIACGLHFDKDIRKSPQFEK 268
Query: 180 ---------------------------DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
D P+P+ T++ +KNL V E L+ FS
Sbjct: 269 RRSKLEGLTVIKESLESEACTDSNSLGDSPGPTPS---TSVHVKNLPIGVCNEDLLNYFS 325
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268
K G I S+ ++ + T+ +GF+ + D RALE +NG++ K + RA K
Sbjct: 326 KVGPIKSVYTSKADVYTT-SWGFITYKRSRDTIRALEELNGAIFMGKRVEVTRAVK 380
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 134/306 (43%), Gaps = 55/306 (17%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSKGHGFVQFETEESANAAI 157
+++LF+ +L + + L F F + S K+ SE KS G+G++ F + + A+ AI
Sbjct: 93 ISSLFIGDLDKGVTEKMLLHAFSGFKTLASVKICIDSETKKSLGYGYLNFTSAQEADEAI 152
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY------TNLFMKNL---DSDVTEEHLV 208
E + YV F K+ R++PS Y TN+F NL + +T
Sbjct: 153 EKFS---------YVKLFGKEV-RIMPSMRNSYFRKNIGTNVFFTNLPLENPALTTRVFY 202
Query: 209 EKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG-SVIGSKVLYAARAQ 267
E F K+G++ S + R +N GFV F++ A++A++ N G+K+
Sbjct: 203 ESFRKYGRVLSCKLDRRKN-----IGFVYFESDISAKKAIDDFNSREYFGNKIACGLHFD 257
Query: 268 KKAEREQILRHQFEEKRKE----RILKYK--------------------GSNVYVKNIDD 303
K + QFE++R + ++K ++V+VKN+
Sbjct: 258 KDIRKSP----QFEKRRSKLEGLTVIKESLESEACTDSNSLGDSPGPTPSTSVHVKNLPI 313
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
V +E+L +FS+ G I S + + +GF+ + + +A+ +G + K
Sbjct: 314 GVCNEDLLNYFSKVGPIKSVYTSKADV-YTTSWGFITYKRSRDTIRALEELNGAIFMGKR 372
Query: 364 LYVAIA 369
+ V A
Sbjct: 373 VEVTRA 378
>gi|407043614|gb|EKE42050.1| polyadenylate-binding protein, putative [Entamoeba nuttalli P19]
Length = 514
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 176/354 (49%), Gaps = 29/354 (8%)
Query: 13 SLYVGDLHPDVTDGELF-DAFSEF-KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
+++V L +VT+ L+ EF + +V + KD++ T Y+N + A +AI
Sbjct: 16 TIFVSGLSLNVTESVLYGTVLKEFPNQVLNVHINKDNS--HDTSIAYINMNTHDSAAQAI 73
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N T + G+ + + WS RD R NL+VK + + I ++QE+F +GN +S K
Sbjct: 74 SKLNGTIIEGRKVNMFWSLRDYKLRTQSETNLYVKGIKKEIGQQKMQEVFDKYGNTLSVK 133
Query: 131 VATSEDGKSKGHGFVQFETEESAN---AAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
++T+E +S G G+V++ T + AA E + +GD + +F +K ++ L
Sbjct: 134 LSTNEKNESNGFGYVKYCTVDECKKVIAAKEEI-SKEIGDASFDIVKF-EKQNKSLK--- 188
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKI---ASLLIARD---ENGTSRGFGFVNFDNP 241
TN+++ N+D+ VTEE ++ F FG I AS +A + + GFVN++N
Sbjct: 189 ---TNIYIGNIDATVTEEQFLKYFETFGPIRKDASGKLAYKIVLDQAHQKNKGFVNYENV 245
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A+ + V+GS + + K ER++ R+ E + +YK N+Y+
Sbjct: 246 EDAQKAISSPKTGVLGSGEILIDYYKSKEERKKEWRNALFEIKNNVAGRYKDFNLYINTG 305
Query: 302 DDDVT-DEELKAHFSQCGTITSAKVMRDEKGINKG---FGFVCFSSPEEASKAV 351
+ T D E++ CG I S +V K NK + CF + A A+
Sbjct: 306 KNHTTSDAEIREKLGSCGEIYSLQV----KYYNKQPTEVAYCCFKDAQGAQNAL 355
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 29/241 (12%)
Query: 143 GFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDV 202
++ T +SA AI LNGT + ++ V F D L + + TNL++K + ++
Sbjct: 59 AYINMNTHDSAAQAISKLNGTIIEGRK--VNMFWSLRDYKLRTQSE--TNLYVKGIKKEI 114
Query: 203 TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY 262
++ + E F K+G S+ ++ +E S GFG+V + D+ ++ +
Sbjct: 115 GQQKMQEVFDKYGNTLSVKLSTNEKNESNGFGYVKYCTVDECKKVI-------------- 160
Query: 263 AARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI-- 320
A K+ ++I F+ + E+ K +N+Y+ NID VT+E+ +F G I
Sbjct: 161 ---AAKEEISKEIGDASFDIVKFEKQNKSLKTNIYIGNIDATVTEEQFLKYFETFGPIRK 217
Query: 321 -----TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
+ K++ D+ K GFV + + E+A KA+++ +L + + + KE+R
Sbjct: 218 DASGKLAYKIVLDQ-AHQKNKGFVNYENVEDAQKAISSPKTGVLGSGEILIDYYKSKEER 276
Query: 376 Q 376
+
Sbjct: 277 K 277
>gi|294461458|gb|ADE76290.1| unknown [Picea sitchensis]
Length = 313
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 161/318 (50%), Gaps = 42/318 (13%)
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
MRD G +KG GFV FSSP+EAS+A+ +G ++ KPLYVA+AQRKE+R+A LQ Q++Q
Sbjct: 1 MRDFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQ 60
Query: 386 -----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRP-GLMYQPLGLRTGW 434
MA + + P G P L Y PP ++ PP+ G YQ
Sbjct: 61 LRNPVGMAPAVPARVPMYPPGGPGLNQQIFYGQGPPALI---PPQAAGFGYQ-------- 109
Query: 435 RANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSN 494
+P RP +P+P Q + A QQ Q +
Sbjct: 110 --QQLIPGMRPG--SAPIPNFYLPLMQAQQGQRPGGRRGGVAPIQQQPQQQLPLLQQQML 165
Query: 495 QQKGGQSKYVPNGRIRELNKGSGVSLGT----FNSGGVMARKPDM----------LNGML 540
+ +Y P + E+ SGV+ G + GG+ R + L L
Sbjct: 166 PRGNRVYRYPPGRNVNEIPL-SGVAGGMHPLPLDMGGLPLRAAETTISQPIPIGALASAL 224
Query: 541 AAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA 600
A +PEQQ+ +LGE LYPLV++ + D AK+TGMLLEMD +E+L LLESPE+L KV EA
Sbjct: 225 ANATPEQQRTMLGESLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 284
Query: 601 VQVLK-LSEAKVSTQEAI 617
++VL+ +++A+ + E +
Sbjct: 285 MEVLRNVTQAQANPAEQL 302
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 224 RDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
RD +G S+G GFV F +PD+A RAL MNG ++ SK LY A AQ+K ER L+ QF +
Sbjct: 2 RDFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQL 61
Query: 284 R 284
R
Sbjct: 62 R 62
>gi|156837090|ref|XP_001642579.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
gi|156113126|gb|EDO14721.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 111/199 (55%), Gaps = 35/199 (17%)
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
Q L+ Q+E R E++ KY+G N++VKN+DD V DE+L+ FS GTI SAKVMR E G +
Sbjct: 1 QELKKQYEAARLEKMTKYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKS 60
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL--------QLQYAQ 385
K FGFVCFS+PEEA++A+ + ++ KPLYVAIAQRKE R+A L Q++Y Q
Sbjct: 61 KNFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKEVRRAQLAQQVQARNQMRYQQ 120
Query: 386 HMAGIEGSSANVIPSGY--PSLYYTTPP-GI--------VSQVPPR-----PGLMYQPLG 429
A + IP + P Y PP G+ +S VPP+ PG+
Sbjct: 121 ATAAAAAAG---IPGQFLQPMFYGVMPPRGVPFNGPNPQMSGVPPQQFRNGPGVY----- 172
Query: 430 LRTGWRANGFVPPTRPAFQ 448
G A G PP FQ
Sbjct: 173 ---GMPAQGSFPPNDQFFQ 188
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
NLF+KNLD V +E L E+FS FG I S + R E+G S+ FGFV F P++A RA+
Sbjct: 21 VNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGFVCFSTPEEATRAITE 80
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKER 287
N ++ K LY A AQ+K R L Q + + + R
Sbjct: 81 KNQQIVAGKPLYVAIAQRKEVRRAQLAQQVQARNQMR 117
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 46/73 (63%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
NLFVKNL +S+D+ +LQE F FG IIS KV +EDGKSK GFV F T E A AI
Sbjct: 22 NLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGFVCFSTPEEATRAITEK 81
Query: 161 NGTTVGDKRIYVG 173
N V K +YV
Sbjct: 82 NQQIVAGKPLYVA 94
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L+V +L V D +L + FS F ++ S +V + + G+S +G+V F +P +A RAI
Sbjct: 22 NLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMR-TEDGKSKNFGFVCFSTPEEATRAITE 80
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVAN 101
KN + GK L ++ + R + R++ +A
Sbjct: 81 KNQQIVAGKPLYVAIAQRK-EVRRAQLAQ 108
>gi|449708821|gb|EMD48209.1| polyadenylate-binding protein, putative [Entamoeba histolytica
KU27]
Length = 514
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 176/354 (49%), Gaps = 29/354 (8%)
Query: 13 SLYVGDLHPDVTDGELF-DAFSEF-KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
+++V L +VT+ L+ EF + +V + KD++ T Y+N + A +AI
Sbjct: 16 TIFVSGLSLNVTESVLYGTVLKEFPNQVLNVHINKDNS--HDTSIAYINMNTHDSAAQAI 73
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N T + G+ + + WS RD R NL+VK + + I ++QE+F +GN +S K
Sbjct: 74 SKLNGTIIEGRKVNMFWSLRDYKLRTQSETNLYVKGIKKEIGQQKMQEVFDKYGNTLSVK 133
Query: 131 VATSEDGKSKGHGFVQFETEESAN---AAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
++T+E +S G G+V++ T + AA E + +G+ + +F +K ++ L
Sbjct: 134 LSTNEKNESNGFGYVKYCTVDECKKVIAAKEEI-SKEIGEASFDIVKF-EKQNKSLK--- 188
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKI---ASLLIARD---ENGTSRGFGFVNFDNP 241
TN+++ N+D+ VTEE ++ F FG I AS +A + + GFVN++N
Sbjct: 189 ---TNIYIGNIDATVTEEQFLKYFETFGPIRKDASGKLAYKIVLDQAHQKNKGFVNYENV 245
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A+ + V+GS + + K ER++ R+ E + +YK N+Y+
Sbjct: 246 EDAQKAISSPKTGVLGSGEILIDYYKSKEERKKEWRNALFEIKNNVAGRYKDFNLYINTG 305
Query: 302 DDDVT-DEELKAHFSQCGTITSAKVMRDEKGINKG---FGFVCFSSPEEASKAV 351
+ T D E++ CG I S +V K NK + CF + A A+
Sbjct: 306 KNHTTSDAEIREKLGSCGEIYSLQV----KYYNKQPTEVAYCCFKDAQGAQNAL 355
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 29/241 (12%)
Query: 143 GFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDV 202
++ T +SA AI LNGT + ++ V F D L + + TNL++K + ++
Sbjct: 59 AYINMNTHDSAAQAISKLNGTIIEGRK--VNMFWSLRDYKLRTQSE--TNLYVKGIKKEI 114
Query: 203 TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY 262
++ + E F K+G S+ ++ +E S GFG+V + D+ ++ +
Sbjct: 115 GQQKMQEVFDKYGNTLSVKLSTNEKNESNGFGYVKYCTVDECKKVI-------------- 160
Query: 263 AARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI-- 320
A K+ ++I F+ + E+ K +N+Y+ NID VT+E+ +F G I
Sbjct: 161 ---AAKEEISKEIGEASFDIVKFEKQNKSLKTNIYIGNIDATVTEEQFLKYFETFGPIRK 217
Query: 321 -----TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
+ K++ D+ K GFV + + E+A KA+++ +L + + + KE+R
Sbjct: 218 DASGKLAYKIVLDQ-AHQKNKGFVNYENVEDAQKAISSPKTGVLGSGEILIDYYKSKEER 276
Query: 376 Q 376
+
Sbjct: 277 K 277
>gi|343959560|dbj|BAK63637.1| polyadenylate-binding protein 1 [Pan troglodytes]
Length = 284
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 151/295 (51%), Gaps = 49/295 (16%)
Query: 354 FHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY---- 402
+G ++ KPLYVA+AQRKE+RQAHL QY Q MA + VI PSGY
Sbjct: 1 MNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAA 60
Query: 403 -P-----SLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVN 455
P + YY PP ++Q+ P P W A G RP FQ P +
Sbjct: 61 IPQTQNRAAYY--PPSQIAQLRPSPR-----------WTAQG----ARPHPFQNMPGAIR 103
Query: 456 PKHNRQNRGRMN--GNMLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI-- 509
P R M + +P+V + S+Q+ ++ + VP +
Sbjct: 104 PAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAA 163
Query: 510 ------RELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKH 563
+ LN V++ + V ++P + +++AP P++QKQ+LGERL+PL++
Sbjct: 164 GVRNPQQHLNAQPQVTMQQ-PAVHVQGQEPLTASMLVSAP-PQEQKQMLGERLFPLIQAM 221
Query: 564 KPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
P L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 222 HPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 276
>gi|67469857|ref|XP_650900.1| polyadenylate-binding protein [Entamoeba histolytica HM-1:IMSS]
gi|56467566|gb|EAL45514.1| polyadenylate-binding protein, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 514
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 176/354 (49%), Gaps = 29/354 (8%)
Query: 13 SLYVGDLHPDVTDGELF-DAFSEF-KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
+++V L +VT+ L+ EF + +V + KD++ T Y+N + A +AI
Sbjct: 16 TIFVSGLSLNVTESVLYGTVLKEFPNQVLNVHINKDNS--HDTSIAYINMNTHDSAAQAI 73
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N T + G+ + + WS RD R NL+VK + + I ++QE+F +GN +S K
Sbjct: 74 SKLNGTIIEGRKVNMFWSLRDYKLRTQSETNLYVKGIKKEIGQQKMQEVFDKYGNTLSVK 133
Query: 131 VATSEDGKSKGHGFVQFETEESAN---AAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA 187
++T+E +S G G+V++ T + AA E + +G+ + +F +K ++ L
Sbjct: 134 LSTNEKNESNGFGYVKYCTVDECKKVIAAKEEI-SKEIGEASFDIVKF-EKQNKSLK--- 188
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKI---ASLLIARD---ENGTSRGFGFVNFDNP 241
TN+++ N+D+ VTEE ++ F FG I AS +A + + GFVN++N
Sbjct: 189 ---TNIYIGNIDATVTEEQFLKYFETFGPIRKDASGKLAYKIVLDQAHQKNKGFVNYENV 245
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A+ + V+GS + + K ER++ R+ E + +YK N+Y+
Sbjct: 246 EDAQKAISSPKTGVLGSGEILIDYYKSKEERKKEWRNALFEIKNNVAGRYKDFNLYINTG 305
Query: 302 DDDVT-DEELKAHFSQCGTITSAKVMRDEKGINKG---FGFVCFSSPEEASKAV 351
+ T D E++ CG I S +V K NK + CF + A A+
Sbjct: 306 KNHTTSDAEIREKLGSCGEIYSLQV----KYYNKQPTEVAYCCFKDAQGAQNAL 355
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 29/241 (12%)
Query: 143 GFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDV 202
++ T +SA AI LNGT + ++ V F D L + + TNL++K + ++
Sbjct: 59 AYINMNTHDSAAQAISKLNGTIIEGRK--VNMFWSLRDYKLRTQSE--TNLYVKGIKKEI 114
Query: 203 TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY 262
++ + E F K+G S+ ++ +E S GFG+V + D+ ++ +
Sbjct: 115 GQQKMQEVFDKYGNTLSVKLSTNEKNESNGFGYVKYCTVDECKKVI-------------- 160
Query: 263 AARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI-- 320
A K+ ++I F+ + E+ K +N+Y+ NID VT+E+ +F G I
Sbjct: 161 ---AAKEEISKEIGEASFDIVKFEKQNKSLKTNIYIGNIDATVTEEQFLKYFETFGPIRK 217
Query: 321 -----TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
+ K++ D+ K GFV + + E+A KA+++ +L + + + KE+R
Sbjct: 218 DASGKLAYKIVLDQ-AHQKNKGFVNYENVEDAQKAISSPKTGVLGSGEILIDYYKSKEER 276
Query: 376 Q 376
+
Sbjct: 277 K 277
>gi|296081049|emb|CBI18330.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 124 bits (312), Expect = 1e-25, Method: Composition-based stats.
Identities = 62/129 (48%), Positives = 81/129 (62%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVG L +VTD LFD F + + SV++C D +T RS YG VN +P D +RA++V
Sbjct: 16 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALDV 75
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N T L+GK RI +S DP RKSG N+F+KNL + +D+ L++ F FGNI SCKVA
Sbjct: 76 LNFTHLNGKPTRIMYSHCDPSVRKSGTRNIFIKNLDKRVDHKALRDTFSTFGNIFSCKVA 135
Query: 133 TSEDGKSKG 141
G G
Sbjct: 136 ADASGSYSG 144
Score = 60.1 bits (144), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 23/150 (15%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ L+S+VT+ HL + F + G + S+ I D S +G VN NP D RAL+
Sbjct: 15 TSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALD 74
Query: 250 AMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N + + K ++Y+ H RK N+++KN+D V
Sbjct: 75 VLNFTHLNGKPTRIMYS--------------HCDPSVRKSGT-----RNIFIKNLDKRVD 115
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGF 336
+ L+ FS G I S KV D G G
Sbjct: 116 HKALRDTFSTFGNIFSCKVAADASGSYSGL 145
Score = 43.5 bits (101), Expect = 0.32, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIEN 159
+L+V L ++ + L ++F G ++S ++ +S +G V + A++
Sbjct: 16 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALDV 75
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPS---PAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
LN T + K R++ S P+ + + N+F+KNLD V + L + FS
Sbjct: 76 LNFTHLNGK----------PTRIMYSHCDPSVRKSGTRNIFIKNLDKRVDHKALRDTFST 125
Query: 214 FGKIASLLIARDENGTSRGF 233
FG I S +A D +G+ G
Sbjct: 126 FGNIFSCKVAADASGSYSGL 145
>gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Mangifera indica]
Length = 130
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 81/105 (77%)
Query: 281 EEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVC 340
E+ E K++G+N+Y+KN+DD + D++LK FSQ G+ITS KVMRD GI++G GFV
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 341 FSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
F++PEEAS+A+ +G M+ KPL+VA+AQRKEDR+A LQ Q++Q
Sbjct: 61 FTTPEEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQ 105
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 61/94 (64%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
NL+MKNLD + ++ L + FS+FG I S + RD NG SRG GFV F P++A RA+
Sbjct: 14 ANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKR 284
MNG ++ SK L+ A AQ+K +R L+ QF + R
Sbjct: 74 MNGKMVVSKPLFVALAQRKEDRRARLQAQFSQIR 107
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 54/82 (65%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
ANL++KNL +SID+ +L+++F FG+I SCKV +G S+G GFV F T E A+ AI
Sbjct: 14 ANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 160 LNGTTVGDKRIYVGRFIKKSDR 181
+NG V K ++V +K DR
Sbjct: 74 MNGKMVVSKPLFVALAQRKEDR 95
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LY+ +L + D +L FS+F S+ S +V +D G S G+V F +P +A RAI
Sbjct: 14 ANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRD-PNGISRGSGFVAFTTPEEASRAIL 72
Query: 72 VKNHTQLHGKMLRISWSCRDPDAR 95
N + K L ++ + R D R
Sbjct: 73 EMNGKMVVSKPLFVALAQRKEDRR 96
>gi|324525699|gb|ADY48582.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 121
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 72/102 (70%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ LF+ FS + S+RVC+D+ T RS Y YVNF P DA RA++
Sbjct: 19 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 78
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDN 113
N ++GK +RI WS RDP R+SG N+F+KNL +SIDN
Sbjct: 79 TMNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDN 120
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDD 243
+P+ +L++ +L DVTE L EKFS G + S+ + RD S G+ +VNF P D
Sbjct: 13 TPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPAD 72
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A RAL+ MN V+ K + +Q R + + N+++KN+D
Sbjct: 73 AERALDTMNFDVMYGKPIRIMWSQ----------------RDPSMRRSGAGNIFIKNLDK 116
Query: 304 DVTDE 308
+ ++
Sbjct: 117 SIDNK 121
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 16 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRD--AITRRSLGYAYVNFQQPADA 73
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + +++ KP+ + +QR
Sbjct: 74 ERALDTMNFDVMYGKPIRIMWSQR 97
>gi|294928940|ref|XP_002779243.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239888268|gb|EER11038.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 86/132 (65%), Gaps = 3/132 (2%)
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
LY ARAQ KAER +L+ QF + + ++ G N+YVKN+ + V D ELK F GTI
Sbjct: 50 LYVARAQSKAERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTI 109
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
TS KVM D+KG+++GFGFVCFS+ EEA+KAV H ++ KPLYV + +++E R LQ
Sbjct: 110 TSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQ 169
Query: 381 LQYA---QHMAG 389
+Y QH G
Sbjct: 170 QRYRAPPQHEMG 181
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAI 157
G NL+VKNL E++D+ L+ MF+ FG I S KV T + G S+G GFV F T E A A+
Sbjct: 81 GGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAV 140
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRV 182
+++ +G K +YVG K+ R+
Sbjct: 141 TDMHLKLIGGKPLYVGMHEKREQRL 165
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 169 RIYVGRFIKKSDR--VLPSPAAKY----------TNLFMKNLDSDVTEEHLVEKFSKFGK 216
R+YV R K++R VL A NL++KNL V + L F FG
Sbjct: 49 RLYVARAQSKAERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGT 108
Query: 217 IASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQIL 276
I S+ + D+ G SRGFGFV F ++A +A+ M+ +IG K LY +K+ +R + L
Sbjct: 109 ITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERL 168
Query: 277 RHQF 280
+ ++
Sbjct: 169 QQRY 172
>gi|365760899|gb|EHN02583.1| Pes4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 598
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 178/390 (45%), Gaps = 67/390 (17%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++GDLH VT+ L F +F S S +VC DS T +S +GY+NF +A RA+E
Sbjct: 80 LFIGDLHETVTEETLKGIFGKFPSFVSAKVCLDSITKKSLGHGYLNFEDKEEAERAMEEL 139
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ-----EMFQNFGNIIS 128
N+T ++G+ +RI S R+ RK+ N+F NL ++N L + F +G I+S
Sbjct: 140 NYTDVNGREIRIMPSLRNTTFRKNFGTNVFFSNL--PLNNPLLTTRVFYDTFSRYGKILS 197
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP---- 184
CK+ + +D GFV FE E++A I+ N T+ K+I G K R +P
Sbjct: 198 CKLDSRKDI-----GFVYFENEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFET 252
Query: 185 -------------------------------SPAAKYTNLFMKNLDSDVTEEHLVEKFSK 213
+ ++ ++F+KNL T + ++ FS+
Sbjct: 253 QKSRLDAETIIEKEQALNATQLKRNDGASKNNQSSSQNSIFIKNLPIITTRDDVLNFFSE 312
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
G I S+ ++ + + FV + + +D+ +A++ N K L +RAQ K ER
Sbjct: 313 VGPIKSIYLS-NATKVKYLWAFVTYKSNEDSEKAIKRYNNFYFRGKKLLVSRAQDKEERA 371
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+ + Q K S ++++N+ V ++E + I K+ D G N
Sbjct: 372 KFIESQ------------KMSTLFLENL-SAVCNKEFLKYLCHQENIRPFKIQID--GYN 416
Query: 334 KG----FGFVCFSSPEEASKAVNTFHGYML 359
+ G + F + E+A++ N + ++
Sbjct: 417 ESSATYSGHIKFRNFEDATRIFNFLNNRLV 446
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 142/315 (45%), Gaps = 51/315 (16%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSKGHGFVQFETEESANAAIENL 160
LF+ +L E++ L+ +F F + +S KV S KS GHG++ FE +E A A+E L
Sbjct: 80 LFIGDLHETVTEETLKGIFGKFPSFVSAKVCLDSITKKSLGHGYLNFEDKEEAERAMEEL 139
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKY------TNLFMKNLDSD---VTEEHLVEKF 211
N T V + I R++PS TN+F NL + +T + F
Sbjct: 140 NYTDVNGREI----------RIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTF 189
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG-SVIGSKVLYAARAQKKA 270
S++GKI S + + + GFV F+N AR ++ N S G K+L K+
Sbjct: 190 SRYGKILSCKL-----DSRKDIGFVYFENEKTARNVIKMYNNTSFFGKKILCGIHFDKEV 244
Query: 271 -------------------EREQILRHQFEEKRKERILKYKGSN----VYVKNIDDDVTD 307
E+EQ L + KR + K S+ +++KN+ T
Sbjct: 245 RSVPNFETQKSRLDAETIIEKEQALNAT-QLKRNDGASKNNQSSSQNSIFIKNLPIITTR 303
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
+++ FS+ G I S + + + + FV + S E++ KA+ ++ + K L V+
Sbjct: 304 DDVLNFFSEVGPIKSI-YLSNATKVKYLWAFVTYKSNEDSEKAIKRYNNFYFRGKKLLVS 362
Query: 368 IAQRKEDRQAHLQLQ 382
AQ KE+R ++ Q
Sbjct: 363 RAQDKEERAKFIESQ 377
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 102 LFVKNL--IESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
+F+KNL I + D+V F G I S ++ + K FV +++ E + AI+
Sbjct: 292 IFIKNLPIITTRDDV--LNFFSEVGPIKSIYLSNATKVKYLW-AFVTYKSNEDSEKAIKR 348
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
N K++ V R K +R + K + LF++NL S V + ++ I
Sbjct: 349 YNNFYFRGKKLLVSRAQDKEERAKFIESQKMSTLFLENL-SAVCNKEFLKYLCHQENIRP 407
Query: 220 LLIARD-ENGTSRGF-GFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
I D N +S + G + F N +DA R +N ++G ++ +
Sbjct: 408 FKIQIDGYNESSATYSGHIKFRNFEDATRIFNFLNNRLVGGSIIMTS 454
>gi|367013040|ref|XP_003681020.1| hypothetical protein TDEL_0D02250 [Torulaspora delbrueckii]
gi|359748680|emb|CCE91809.1| hypothetical protein TDEL_0D02250 [Torulaspora delbrueckii]
Length = 622
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 141/302 (46%), Gaps = 47/302 (15%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L++GDL P VT+ L D F +F+SL SV++C DS +G+S YGY+NF + DA +A E
Sbjct: 97 VALFIGDLEPSVTENMLRDIFGKFRSLTSVKICLDSNSGKSLGYGYLNFANSEDAEKATE 156
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ-----EMFQNFGNI 126
N+ + G+ +RI S R+ RK+ N+F NL +++ RL + F+ +G I
Sbjct: 157 EFNYRPIEGQEVRIMPSLRNSFYRKNVGTNVFFSNL--PLEDSRLTTRVFYDTFKKYGKI 214
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
+SCK+ K K GF+ F ++SA I++ NG ++ G K R P
Sbjct: 215 LSCKL-----DKRKDIGFIYFNNDQSARKVIKDYNGKEFFGNKVLCGIHFDKDFRKYPEF 269
Query: 187 AAKYTNL----------------------------------FMKNLDSDVTEEHLVEKFS 212
+ +NL F+KNL D T E +++ FS
Sbjct: 270 EKRISNLDSITVAMEELTTEDSNKVVLQRDSGSQVPHPNAVFVKNLPMDCTNEEILDFFS 329
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
G + S+ ++ S + FV + D ++++ N ++ L ++A K +
Sbjct: 330 NIGPVKSVFSSKAPKFNSL-WAFVTYKRGSDTSKSIQFYNDKEFKNRRLIVSKAVPKEGK 388
Query: 273 EQ 274
Q
Sbjct: 389 NQ 390
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 138/310 (44%), Gaps = 49/310 (15%)
Query: 96 KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEESAN 154
KS VA LF+ +L S+ L+++F F ++ S K+ S GKS G+G++ F E A
Sbjct: 94 KSVVA-LFIGDLEPSVTENMLRDIFGKFRSLTSVKICLDSNSGKSLGYGYLNFANSEDAE 152
Query: 155 AAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY------TNLFMKNL---DSDVTEE 205
A E N + + + R++PS + TN+F NL DS +T
Sbjct: 153 KATEEFNYRPIEGQEV----------RIMPSLRNSFYRKNVGTNVFFSNLPLEDSRLTTR 202
Query: 206 HLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG-SVIGSKVL--- 261
+ F K+GKI S + + + GF+ F+N AR+ ++ NG G+KVL
Sbjct: 203 VFYDTFKKYGKILSCKLDK-----RKDIGFIYFNNDQSARKVIKDYNGKEFFGNKVLCGI 257
Query: 262 -YAARAQKKAEREQILRH-----------QFEEKRKERILKYKGSNV------YVKNIDD 303
+ +K E E+ + + E+ K + + GS V +VKN+
Sbjct: 258 HFDKDFRKYPEFEKRISNLDSITVAMEELTTEDSNKVVLQRDSGSQVPHPNAVFVKNLPM 317
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
D T+EE+ FS G + S + K N + FV + + SK++ ++ +
Sbjct: 318 DCTNEEILDFFSNIGPVKSVFSSKAPK-FNSLWAFVTYKRGSDTSKSIQFYNDKEFKNRR 376
Query: 364 LYVAIAQRKE 373
L V+ A KE
Sbjct: 377 LIVSKAVPKE 386
>gi|302408078|ref|XP_003001874.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
gi|261359595|gb|EEY22023.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
Length = 555
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 108/219 (49%), Gaps = 41/219 (18%)
Query: 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
AV P A+ ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+
Sbjct: 53 AVPQPQAS--ASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYN 110
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
+ D +A+E N+T ++G+ RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 111 TTSDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTIS 170
Query: 122 NFGNIISCKV-------------------------ATSED--------------GKSKGH 142
+ K A S++ GKSKG
Sbjct: 171 EGEDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLGKSKGF 230
Query: 143 GFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
GFV F E A A+ ++N + +K +YV +K R
Sbjct: 231 GFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVR 269
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 25/225 (11%)
Query: 180 DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNF 238
+ +P P A + L++ L+ VTE L E FS G +AS+ + RD S G+ +VN+
Sbjct: 51 NSAVPQPQASAS-LYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNY 109
Query: 239 DNPDDARRALEAMNGSVIGSK---VLYAAR--------------------AQKKAEREQI 275
+ D +ALE +N +VI + ++++ R KA + I
Sbjct: 110 NTTSDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTI 169
Query: 276 LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKG 335
+ E+K KE + + D E A + AK + G +KG
Sbjct: 170 SEGEDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLGKSKG 229
Query: 336 FGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
FGFVCFS+PE+A+KAV + M+ KPLYVA+AQRK+ R+ L+
Sbjct: 230 FGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLE 274
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 44/57 (77%)
Query: 547 QQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
QQKQI+GE ++P + +P+L KITGMLLEM+NSEL+ L+E ++ +KV+EA+ V
Sbjct: 477 QQKQIIGELIFPKIAAQQPELAGKITGMLLEMENSELITLIEDDNAMKLKVDEALGV 533
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 98/234 (41%), Gaps = 54/234 (23%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L + L E+F + G + S C+ A + +S G+ +V + T A
Sbjct: 61 ASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTR--RSLGYAYVNYNTTSDGEKA 118
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + + I S R PA + N+F+KNLD + + L + S+
Sbjct: 119 LEELNYTVINGRPCR----IMWSQR---DPALRKNGQGNVFIKNLDVAIDNKALHDTISE 171
Query: 214 -----------------FGKIASLLIARDEN----------------------GTSRGFG 234
+ ++++ G S+GFG
Sbjct: 172 GEDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLGKSKGFG 231
Query: 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
FV F NP+DA +A+ MN +I +K LY A AQ+K R+ L + + + R+
Sbjct: 232 FVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLEQSIQARNQMRM 285
>gi|294884878|gb|ADF47447.1| TIA1-like protein [Dugesia japonica]
Length = 323
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 144/272 (52%), Gaps = 24/272 (8%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
++V NL +++++ L +F NFG ISC + ++ + F+++ SA+ A+ ++
Sbjct: 9 IYVGNLPDAVNDQLLIRIFGNFGQCISCHIIRDFSCQTNPYAFIEYTDHSSASLALSAMD 68
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAA------KYTN---LFMKNLDSDVTEEHLVEKFS 212
G + + +I V +P PAA Y+N +F+ ++ DV E L E FS
Sbjct: 69 GIYMWNNQIKVNW--SSGPSAVPGPAAVASAKIDYSNSVQIFVGDIGLDVDEPMLKEGFS 126
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKA-E 271
+FG++ + R +G SRGF FV+F N D+A RA+++M+ + ++ + A + +
Sbjct: 127 QFGQLIDAKVVRYPDGQSRGFAFVSFSNRDEAERAIQSMHKTWFHNRTIKCNWATRNGLD 186
Query: 272 REQILRHQ---FEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD 328
EQ +++ +E KE L +NVYV +++T+E L HF + G I S KV +
Sbjct: 187 GEQFIKYTPRPYELVYKEAPL--TNTNVYVAG--ENLTEELLNCHFQEFGRIDSVKVYPE 242
Query: 329 EKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
KG F+ F + E A++A++ HGY ++
Sbjct: 243 -----KGHAFINFVTHEAAARAISQRHGYKIN 269
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 118/273 (43%), Gaps = 31/273 (11%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++YVG+L V D L F F S + +D + ++ Y ++ + A A+
Sbjct: 8 TIYVGNLPDAVNDQLLIRIFGNFGQCISCHIIRDFSC-QTNPYAFIEYTDHSSASLALSA 66
Query: 73 KNHTQLHGKMLRISWSCRDPDA------------RKSGVANLFVKNLIESIDNVRLQEMF 120
+ + ++++WS P A S +FV ++ +D L+E F
Sbjct: 67 MDGIYMWNNQIKVNWS-SGPSAVPGPAAVASAKIDYSNSVQIFVGDIGLDVDEPMLKEGF 125
Query: 121 QNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG------- 173
FG +I KV DG+S+G FV F + A AI++++ T ++ I
Sbjct: 126 SQFGQLIDAKVVRYPDGQSRGFAFVSFSNRDEAERAIQSMHKTWFHNRTIKCNWATRNGL 185
Query: 174 ---RFIKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG 228
+FIK + R L A TN + ++TEE L F +FG+I S+ + +
Sbjct: 186 DGEQFIKYTPRPYELVYKEAPLTNTNVYVAGENLTEELLNCHFQEFGRIDSVKVYPE--- 242
Query: 229 TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+G F+NF + A RA+ +G I V+
Sbjct: 243 --KGHAFINFVTHEAAARAISQRHGYKINDNVI 273
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++ NL V ++ L+ F FG+ S I RD + + + F+ + + A AL AM+
Sbjct: 9 IYVGNLPDAVNDQLLIRIFGNFGQCISCHIIRDFSCQTNPYAFIEYTDHSSASLALSAMD 68
Query: 253 GSVIGS---KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
G + + KV +++ + + + +I +V +I DV +
Sbjct: 69 GIYMWNNQIKVNWSSGPSAVPGPAAVASAKIDYSNSVQI--------FVGDIGLDVDEPM 120
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FSQ G + AKV+R G ++GF FV FS+ +EA +A+ + H H + + A
Sbjct: 121 LKEGFSQFGQLIDAKVVRYPDGQSRGFAFVSFSNRDEAERAIQSMHKTWFHNRTIKCNWA 180
Query: 370 QR 371
R
Sbjct: 181 TR 182
>gi|320581163|gb|EFW95384.1| poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 716
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 155/318 (48%), Gaps = 42/318 (13%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
PP T SL+VGDL +++ +L + F+++ L SV++ D TG S YGYVN+ +
Sbjct: 175 PPKQVT--SLFVGDLDKSLSELDLKNVFNKYPGLLSVKIPADCQTGNSLGYGYVNYSNED 232
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
A A+E N+T + +RI S RD R+ AN+F+ NL + +L + F+ G
Sbjct: 233 QANFAMESLNYTTIGSSEIRIMPSLRDKSQRERIGANVFLSNLSSHLTTRQLYDRFRKHG 292
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL- 183
N++SCK + SK F+ FE++E A ++ N TT+ + +YVG I K DR L
Sbjct: 293 NVLSCKYDS-----SKQQAFIHFESKEVAYEVVKTYNHTTLDGRLVYVGLHILKKDRELF 347
Query: 184 ---PSPAAKYT----------------------------NLFMKNLDSDVTEEHLVEKFS 212
S ++K T ++F++NL ++ EEH+++
Sbjct: 348 GATASASSKLTEKRDISQIPTFSPTFQNTKHKNDISTHYSIFVRNLPLNI-EEHVIKSLV 406
Query: 213 K-FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
+ +G + S+L AR + + V N + +A+ +N I + L+ RA K E
Sbjct: 407 EPYGPVLSVL-ARKVPKKNGCWALVTLSNQESVDKAVSHLNMVEINKQQLFVTRAIPKEE 465
Query: 272 REQILRHQFEEKRKERIL 289
+ + + + K K +IL
Sbjct: 466 KSYSRKQEVQPKYKLKIL 483
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 143/304 (47%), Gaps = 43/304 (14%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKV-ATSEDGKSKGHGFVQFETEESANAAI 157
V +LFV +L +S+ + L+ +F + ++S K+ A + G S G+G+V + E+ AN A+
Sbjct: 179 VTSLFVGDLDKSLSELDLKNVFNKYPGLLSVKIPADCQTGNSLGYGYVNYSNEDQANFAM 238
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY------TNLFMKNLDSDVTEEHLVEKF 211
E+LN TT+G I R++PS K N+F+ NL S +T L ++F
Sbjct: 239 ESLNYTTIGSSEI----------RIMPSLRDKSQRERIGANVFLSNLSSHLTTRQLYDRF 288
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
K G + S + +S+ F++F++ + A ++ N + + +++Y K +
Sbjct: 289 RKHGNVLSC-----KYDSSKQQAFIHFESKEVAYEVVKTYNHTTLDGRLVYVGLHILKKD 343
Query: 272 REQI-----LRHQFEEKRKERIL----------KYKGS-----NVYVKNIDDDVTDEELK 311
RE + EKR + K+K +++V+N+ ++ + +K
Sbjct: 344 RELFGATASASSKLTEKRDISQIPTFSPTFQNTKHKNDISTHYSIFVRNLPLNIEEHVIK 403
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+ G + S + R N + V S+ E KAV+ + ++++ L+V A
Sbjct: 404 SLVEPYGPVLSV-LARKVPKKNGCWALVTLSNQESVDKAVSHLNMVEINKQQLFVTRAIP 462
Query: 372 KEDR 375
KE++
Sbjct: 463 KEEK 466
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 24/196 (12%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNP 241
L SP + T+LF+ +LD ++E L F+K+ + S+ I D + G S G+G+VN+ N
Sbjct: 172 LLSPPKQVTSLFVGDLDKSLSELDLKNVFNKYPGLLSVKIPADCQTGNSLGYGYVNYSNE 231
Query: 242 DDARRALEAMNGSVIG-SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKN 300
D A A+E++N + IG S++ + K++RE+I G+NV++ N
Sbjct: 232 DQANFAMESLNYTTIGSSEIRIMPSLRDKSQRERI-----------------GANVFLSN 274
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
+ +T +L F + G + S K +K F+ F S E A + V T++ L
Sbjct: 275 LSSHLTTRQLYDRFRKHGNVLSCKY-----DSSKQQAFIHFESKEVAYEVVKTYNHTTLD 329
Query: 361 RKPLYVAIAQRKEDRQ 376
+ +YV + K+DR+
Sbjct: 330 GRLVYVGLHILKKDRE 345
>gi|449469386|ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP47B'-like [Cucumis
sativus]
Length = 422
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 151/304 (49%), Gaps = 40/304 (13%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P T +L++GDL V + L F+ + S+++ ++ TG+ YG+V F+S
Sbjct: 13 PTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 72
Query: 65 DAIRAIEVKNHTQLHG--KMLRISWSC-----RDPDARKSGVANLFVKNLIESIDNVRLQ 117
A R ++ N TQ+ G + R++W+ R PDA ++FV +L + + LQ
Sbjct: 73 AAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE--HSIFVGDLAPDVTDYLLQ 130
Query: 118 EMFQ-NFGNIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGT------------ 163
E F+ + ++ KV T + G+SKG+GFV+F E N A+ +NG
Sbjct: 131 ETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAA 190
Query: 164 ----TVGDKRIY-VGRFI------KKSDRVLPSPA-AKYTNLFMKNLDSDVTEEHLVEKF 211
T+G ++ Y +G+ + S VLP+ A T +F+ NLD ++TEE L + F
Sbjct: 191 TPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTF 250
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
+FG+IA + I +G GFV F A A++ M G +IG +V+ + + A
Sbjct: 251 LQFGEIAYVKIP-----AGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAA 305
Query: 272 REQI 275
++ +
Sbjct: 306 KQDL 309
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 134/282 (47%), Gaps = 25/282 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
V L++ +L +D L F + G +IS K+ ++ G+ +G+GFV+F + +A +
Sbjct: 19 VRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERIL 78
Query: 158 ENLNGTTV-GDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF-SKFG 215
+ NGT + G ++ + + A ++F+ +L DVT+ L E F +++
Sbjct: 79 QTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYP 138
Query: 216 KIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
+ + D N G S+G+GFV F + ++ RA+ MNG ++ + + A K +
Sbjct: 139 SVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAATPK--KTI 196
Query: 275 ILRHQFEEKRKERIL------------KYKGSN--VYVKNIDDDVTDEELKAHFSQCGTI 320
++ Q+ + + Y +N ++V N+D ++T+EELK F Q G I
Sbjct: 197 GVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTFLQFGEI 256
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
K+ KG GFV F + A +A+ G ++ ++
Sbjct: 257 AYVKIP-----AGKGCGFVQFGTRASAEEAIQKMQGKIIGQQ 293
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 26/229 (11%)
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPD 242
P+ + L++ +L V E +L F+ G++ S+ I R++ G G+GFV F +
Sbjct: 13 PTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 72
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE-----EKRKERILKYKGSNVY 297
A R L+ NG+ + EQ R + E+R + ++ +++
Sbjct: 73 AAERILQTYNGT-------------QMPGTEQTFRLNWASFGIGERRPDAGPEH---SIF 116
Query: 298 VKNIDDDVTDEELKAHF-SQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFH 355
V ++ DVTD L+ F +Q ++ AKV+ D G +KG+GFV F+ E ++A++ +
Sbjct: 117 VGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMN 176
Query: 356 GYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG--SSANVIPSGY 402
G +P+ ++ A K+ Q + M + +S V+P+ Y
Sbjct: 177 GVYCSTRPMRISAATPKKTIGVQQQYSLGKAMYPVPAYTTSVPVLPADY 225
>gi|294884831|gb|ADF47427.1| poly(A) binding protein cytoplasmic-2, partial [Dugesia japonica]
Length = 309
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 78/124 (62%), Gaps = 2/124 (1%)
Query: 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354
N+YVKN+DD + D LK F G ITSAKVM D +KGFGFVCFS+PEEA+KAV
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 355 HGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIV 414
+G + KPLYVA+AQRKEDR+AHL QY Q + S N + +L PPG
Sbjct: 61 NGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV--SVNTLISGGPPGGP 118
Query: 415 SQVP 418
S +P
Sbjct: 119 SILP 122
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KNLD + + L ++F FG I S + D N S+GFGFV F NP++A +A+ M
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
NG + GSK LY A AQ+K +R+ L Q+ ++
Sbjct: 61 NGKICGSKPLYVALAQRKEDRKAHLASQYMQR 92
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL 160
NL+VKNL +SID+ RL++ F FGNI S KV T + +SKG GFV F E A A+ +
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 161 NGTTVGDKRIYVGRFIKKSDR 181
NG G K +YV +K DR
Sbjct: 61 NGKICGSKPLYVALAQRKEDR 81
>gi|147864210|emb|CAN80948.1| hypothetical protein VITISV_016699 [Vitis vinifera]
Length = 183
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
SLYVG L +VTD LFD F + + SV++C D +T RS YG VN +P D RA++
Sbjct: 18 TSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTARALD 77
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
V N T L+GK RI +S DP RKSG N+F+KNL + +D+ L + F FGNI+SCKV
Sbjct: 78 VLNFTLLNGKPTRIMYSHCDPSVRKSGTGNIFIKNLDKRVDHKALHDTFSAFGNILSCKV 137
Query: 132 ATSEDG 137
A G
Sbjct: 138 AADASG 143
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 23/145 (15%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ L+S+VT+ HL + F + G + S+ I D S +G VN NP D RAL+
Sbjct: 18 TSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTARALD 77
Query: 250 AMNGSVIGSK---VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
+N +++ K ++Y+ H RK N+++KN+D V
Sbjct: 78 VLNFTLLNGKPTRIMYS--------------HCDPSVRKSGT-----GNIFIKNLDKRVD 118
Query: 307 DEELKAHFSQCGTITSAKVMRDEKG 331
+ L FS G I S KV D G
Sbjct: 119 HKALHDTFSAFGNILSCKVAADASG 143
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIE 158
+L+V L ++ + L ++F G ++S ++ +S +G V + A++
Sbjct: 18 TSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTARALD 77
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT-NLFMKNLDSDVTEEHLVEKFSKFGKI 217
LN T + K + D PS T N+F+KNLD V + L + FS FG I
Sbjct: 78 VLNFTLLNGKPTRI--MYSHCD---PSVRKSGTGNIFIKNLDKRVDHKALHDTFSAFGNI 132
Query: 218 ASLLIARDENGTSR 231
S +A D +G+ R
Sbjct: 133 LSCKVAADASGSYR 146
>gi|148226518|ref|NP_001081557.1| nucleolin [Xenopus laevis]
gi|295899|emb|CAA51460.1| nucleolin [Xenopus laevis]
Length = 705
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 183/383 (47%), Gaps = 40/383 (10%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TA+ S+++G+L+ + EL DA EF S ++ + +D G S +GYV+F S +
Sbjct: 279 TASEGFSIFIGNLNSTLDFDELKDALREFFSKKNLTI-QDVRIGGSKKFGYVDFSSEEEV 337
Query: 67 IRAIEVKNHTQLHGKMLRISWSC-----------RDPDARKSGVANLFVKNLIESIDNVR 115
+A+++ ++ G ++I + ++ D+R LFVKN+ S
Sbjct: 338 EKALKLSGK-KILGLEVKIEKAVAFDKNKNAENKKERDSR-----TLFVKNIPYSTSAEE 391
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
LQE+F+N +I ++ T DG +KG +V+F TE AN A+E G + + ++V
Sbjct: 392 LQEIFENAKDI---RIPTGNDGSNKGIAYVEFSTEAEANKALEEKQGAEIEGRSLFVDFT 448
Query: 176 IKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
+KS PA L + NL TE+ L E F K S+ I +++ G ++GF
Sbjct: 449 GEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFE---KATSIRIPQNQ-GRAKGF 504
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
FV F + +DA+ A+++ N + + + + +Q + + K
Sbjct: 505 AFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSK---------- 554
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
++V+ + +D T+E LK F G+I + V + G +KGFGFV FSS E+A A
Sbjct: 555 -TLFVRGLSEDTTEETLKEAFD--GSINARIVTDRDTGASKGFGFVDFSSAEDAKAAREA 611
Query: 354 FHGYMLHRKPLYVAIAQRKEDRQ 376
+ + + A+ K D Q
Sbjct: 612 MEDGEIDGNKVTLDFAKPKGDSQ 634
>gi|196013113|ref|XP_002116418.1| hypothetical protein TRIADDRAFT_30761 [Trichoplax adhaerens]
gi|190581009|gb|EDV21088.1| hypothetical protein TRIADDRAFT_30761, partial [Trichoplax
adhaerens]
Length = 102
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Query: 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAV 351
+G+N+YVKN+DD + D LK FS+ G+ITSAKVM DEKG +KGFGFVCF++ EEASKA+
Sbjct: 5 QGANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEASKAI 64
Query: 352 NTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAG 389
N G ++ KPLYV AQRKE+R+A L QY H G
Sbjct: 65 NEMSGRIIVSKPLYVTFAQRKEERKAFLASQY-NHRVG 101
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KNLD + + L E+FSKFG I S + DE G S+GFGFV F ++A +A+ M
Sbjct: 8 NLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEASKAINEM 67
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEK 283
+G +I SK LY AQ+K ER+ L Q+ +
Sbjct: 68 SGRIIVSKPLYVTFAQRKEERKAFLASQYNHR 99
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
ANL+VKNL ++ID+ RL+E F FG+I S KV E G SKG GFV F T+E A+ AI
Sbjct: 7 ANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEASKAINE 66
Query: 160 LNGTTVGDKRIYVGRFIKKSDR 181
++G + K +YV +K +R
Sbjct: 67 MSGRIIVSKPLYVTFAQRKEER 88
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T A+LYV +L + D L + FS+F S+ S +V D G S +G+V F + +A +
Sbjct: 4 TQGANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDE-KGASKGFGFVCFATQEEASK 62
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLF 103
AI + + K L ++++ R + RK+ +A+ +
Sbjct: 63 AINEMSGRIIVSKPLYVTFAQRKEE-RKAFLASQY 96
>gi|401625916|gb|EJS43897.1| pes4p [Saccharomyces arboricola H-6]
Length = 611
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 104/381 (27%), Positives = 175/381 (45%), Gaps = 63/381 (16%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++GDLH VT+ L + F +F S S +VC DS T +S +GY+NF +A +A+E
Sbjct: 93 LFIGDLHETVTEETLKEIFGKFPSFVSAKVCLDSVTKKSLGHGYLNFDDKEEAEKAMEEL 152
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ-----EMFQNFGNIIS 128
N+T+++GK +RI S R+ RK+ N+F NL ++N L + F +G I+S
Sbjct: 153 NYTEINGKEVRIMPSLRNTTFRKNFGTNVFFSNL--PLNNPLLTTRVFYDTFSRYGKILS 210
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
CK+ + +D GFV FE E++A I+ N T+ K+I G K R +P+
Sbjct: 211 CKLDSRKDI-----GFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFET 265
Query: 189 KYTNL-----------------------------------FMKNLDSDVTEEHLVEKFSK 213
+ + L F+KNL + T + ++ FS+
Sbjct: 266 QKSRLDSETIIEKEQALNDKKVQRNDGDSKNNLSSSQNSIFIKNLPTITTRDDILNFFSE 325
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
G I S+ ++ + F+ + + +D+ RA++ N K L ARAQ K ER
Sbjct: 326 VGPIKSIYLS-TATKVKYLWAFITYKSGEDSERAIKRYNNFYFRGKKLLVARAQDKEERA 384
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+ + Q K S ++++N+ V ++E + I K+ D N
Sbjct: 385 KFIESQ------------KISTLFLENL-SAVCNKEFLKYLCHQENIRPFKIQMDGYNEN 431
Query: 334 KGF--GFVCFSSPEEASKAVN 352
G++ F + E+A++ N
Sbjct: 432 SATYSGYIKFKNFEDATRIFN 452
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 10/168 (5%)
Query: 102 LFVKNL--IESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
+F+KNL I + D++ F G I S ++T+ K F+ +++ E + AI+
Sbjct: 305 IFIKNLPTITTRDDI--LNFFSEVGPIKSIYLSTATKVKYLW-AFITYKSGEDSERAIKR 361
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
N K++ V R K +R + K + LF++NL S V + ++ I
Sbjct: 362 YNNFYFRGKKLLVARAQDKEERAKFIESQKISTLFLENL-SAVCNKEFLKYLCHQENIRP 420
Query: 220 LLIARD---ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
I D EN + G++ F N +DA R +N ++G ++ +
Sbjct: 421 FKIQMDGYNENSATYS-GYIKFKNFEDATRIFNFLNNRLVGGSIVVTS 467
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ +L VTEE L E F KF S + D S G G++NFD+ ++A +A+E +
Sbjct: 93 LFIGDLHETVTEETLKEIFGKFPSFVSAKVCLDSVTKKSLGHGYLNFDDKEEAEKAMEEL 152
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI---DDDVTDE 308
N + I K + + R R F G+NV+ N+ + +T
Sbjct: 153 NYTEINGKEVRIM----PSLRNTTFRKNF------------GTNVFFSNLPLNNPLLTTR 196
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
FS+ G I S K+ D + K GFV F + A + ++ K + I
Sbjct: 197 VFYDTFSRYGKILSCKL--DSR---KDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGI 251
Query: 369 AQRKEDR 375
KE R
Sbjct: 252 HFDKEVR 258
>gi|363750089|ref|XP_003645262.1| hypothetical protein Ecym_2746 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888895|gb|AET38445.1| Hypothetical protein Ecym_2746 [Eremothecium cymbalariae
DBVPG#7215]
Length = 681
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 147/306 (48%), Gaps = 55/306 (17%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PT T+ +L++GDL VT+ L D F++F S S ++C DS T +S YGY+NF +
Sbjct: 112 PTLTSKKLVALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLGYGYLNFSNE 171
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ-----E 118
DA R IE N+ + G+ +RI S R+ RK+ N+F NL ++N+ L +
Sbjct: 172 EDAERVIEEFNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNL--PLENLALTTRVFYD 229
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG----R 174
F+ +G I+SCK+ + K GFV FE + SA AI NG I G R
Sbjct: 230 AFKKYGKILSCKL-----DRRKNIGFVYFEKDSSAKQAIAEYNGKQFYGNNILCGIHFDR 284
Query: 175 FIKKS-----------DRVL---------------------PSPAAKYTNLFMKNLDSDV 202
++KS D L P P A +F+KNL +
Sbjct: 285 NVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNA----VFIKNLPLNS 340
Query: 203 TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY 262
+ L++ FS+ G + S+ + + + + + F+ F DA+ A++++N S + + +
Sbjct: 341 DSDLLLDYFSQIGPVKSIFTS-NVSKLNSAWAFITFKKGSDAQDAIDSLNHSQLLGRTIE 399
Query: 263 AARAQK 268
+RAQK
Sbjct: 400 LSRAQK 405
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 137/325 (42%), Gaps = 56/325 (17%)
Query: 82 MLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSK 140
++++ S P + LF+ +L E + L++ F F + +S K+ S KS
Sbjct: 102 IVKLGRSKDSPTLTSKKLVALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSL 161
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY------TNLF 194
G+G++ F EE A IE N + + + R++PS + TN+F
Sbjct: 162 GYGYLNFSNEEDAERVIEEFNYIPIFGREV----------RIMPSLRNSFYRKNIGTNVF 211
Query: 195 MKNL---DSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL + +T + F K+GKI S + R +N GFV F+ A++A+
Sbjct: 212 FSNLPLENLALTTRVFYDAFKKYGKILSCKLDRRKN-----IGFVYFEKDSSAKQAIAEY 266
Query: 252 NG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI---------------------L 289
NG G+ +L + + +FE KRK R+
Sbjct: 267 NGKQFYGNNILCGIHFDRNVRKSP----EFE-KRKARLEDMTLVKESLVMDNNQEIPSGS 321
Query: 290 KYKGSN---VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEE 346
K KG + V++KN+ + + L +FSQ G + S K +N + F+ F +
Sbjct: 322 KMKGPHPNAVFIKNLPLNSDSDLLLDYFSQIGPVKSIFTSNVSK-LNSAWAFITFKKGSD 380
Query: 347 ASKAVNTFHGYMLHRKPLYVAIAQR 371
A A+++ + L + + ++ AQ+
Sbjct: 381 AQDAIDSLNHSQLLGRTIELSRAQK 405
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 30/204 (14%)
Query: 173 GRFIKKSDRVLPSP---AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG- 228
G I K R SP + K LF+ +LD VTE++L + F+KF S I D N
Sbjct: 99 GTDIVKLGRSKDSPTLTSKKLVALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTK 158
Query: 229 TSRGFGFVNFDNPDDARRALEAMNG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKER 287
S G+G++NF N +DA R +E N + G +V + R+ I
Sbjct: 159 KSLGYGYLNFSNEEDAERVIEEFNYIPIFGREVRIMPSLRNSFYRKNI------------ 206
Query: 288 ILKYKGSNVYVKNI---DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSP 344
G+NV+ N+ + +T F + G I S K+ R K GFV F
Sbjct: 207 -----GTNVFFSNLPLENLALTTRVFYDAFKKYGKILSCKLDR-----RKNIGFVYFEKD 256
Query: 345 EEASKAVNTFHGYMLHRKPLYVAI 368
A +A+ ++G + + I
Sbjct: 257 SSAKQAIAEYNGKQFYGNNILCGI 280
>gi|355709046|gb|AES03463.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 102
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 77/103 (74%), Gaps = 1/103 (0%)
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE L+ FS GTI
Sbjct: 1 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI 60
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
TSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KP
Sbjct: 61 TSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 102
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 13/102 (12%)
Query: 170 IYVGRFIKKSDR----------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKI 217
IYVGR KK +R + +Y NL++KNLD + +E L ++FS FG I
Sbjct: 1 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI 60
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK 259
S + E G S+GFGFV F +P++A +A+ MNG ++ +K
Sbjct: 61 TSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 101
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
+V+ T+L K ++ +D R GV NL+VKNL + ID+ RL++ F FG I S K
Sbjct: 9 KVERQTELKRKFEQMK---QDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAK 64
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDK 168
V E G+SKG GFV F + E A A+ +NG V K
Sbjct: 65 VMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 101
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+LYV +L + D L FS F ++ S +V + GRS +G+V F SP +A +A+
Sbjct: 34 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV- 90
Query: 72 VKNHTQLHGKML 83
T+++G+++
Sbjct: 91 ----TEMNGRIV 98
>gi|255544854|ref|XP_002513488.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223547396|gb|EEF48891.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 412
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 146/316 (46%), Gaps = 52/316 (16%)
Query: 6 PTATTPA------------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRST 53
PTAT P +L++GDL V + L F+ + S+++ ++ TG+
Sbjct: 4 PTATNPGGYHQPATLEEVRTLWIGDLQYWVDENYLSSCFAHTGEVLSIKIIRNKITGQPE 63
Query: 54 CYGYVNFLSPHDAIRAIEVKNHTQLHG--KMLRISWSC-----RDPDARKSGVANLFVKN 106
YG+V F+S A R ++ N TQ+ G + R++W+ R PDA ++FV +
Sbjct: 64 GYGFVEFVSHVAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE--HSIFVGD 121
Query: 107 LIESIDNVRLQEMFQ-NFGNIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGTT 164
L + + LQE F+ N+ ++ KV T + G+SKG+GFV+F E N A+ +NG
Sbjct: 122 LSPDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFGDENERNRAMTEMNGVF 181
Query: 165 VGDKRIYVGRFIKK-----------SDRVLPSPAAKY-------------TNLFMKNLDS 200
+ + + K + + P PA T +F+ NLD
Sbjct: 182 CSTRPMRISAATPKKTAAYQQQYATAKAIYPLPAYTAPVQVVPADNDITNTTIFVGNLDP 241
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+VTEE L F +FG+I + I RG GFV F A A++ M G VIG +
Sbjct: 242 NVTEEELRPIFLQFGEIVYVKIP-----VGRGCGFVQFATRASAEEAIQRMQGHVIGQQP 296
Query: 261 LYAARAQKKAEREQIL 276
+ + +K+A IL
Sbjct: 297 VRISWGRKQARSTLIL 312
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 154/327 (47%), Gaps = 27/327 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
V L++ +L +D L F + G ++S K+ ++ G+ +G+GFV+F + +A +
Sbjct: 21 VRTLWIGDLQYWVDENYLSSCFAHTGEVLSIKIIRNKITGQPEGYGFVEFVSHVAAERIL 80
Query: 158 ENLNGTTV-GDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF-SKFG 215
+ NGT + G ++ + + A ++F+ +L DVT+ L E F + +
Sbjct: 81 QTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLSPDVTDYLLQETFRANYP 140
Query: 216 KIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
+ + D N G S+G+GFV F + ++ RA+ MNG ++ + + A K +
Sbjct: 141 SVRGAKVVTDPNTGRSKGYGFVKFGDENERNRAMTEMNGVFCSTRPMRISAATPK--KTA 198
Query: 275 ILRHQFEEKRKERIL--------------KYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+ Q+ + L + ++V N+D +VT+EEL+ F Q G I
Sbjct: 199 AYQQQYATAKAIYPLPAYTAPVQVVPADNDITNTTIFVGNLDPNVTEEELRPIFLQFGEI 258
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
K+ + +G GFV F++ A +A+ G+++ ++P+ ++ RK+ R +
Sbjct: 259 VYVKIP-----VGRGCGFVQFATRASAEEAIQRMQGHVIGQQPVRISWG-RKQARSTLIL 312
Query: 381 LQYAQHMAGIEGSSANVIPSGY-PSLY 406
Q++ + +G A + PSLY
Sbjct: 313 DQWSAYYGYGQGYDAYAYGATQDPSLY 339
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 38/239 (15%)
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPD 242
P+ + L++ +L V E +L F+ G++ S+ I R++ G G+GFV F +
Sbjct: 15 PATLEEVRTLWIGDLQYWVDENYLSSCFAHTGEVLSIKIIRNKITGQPEGYGFVEFVSHV 74
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE-----EKRKERILKYKGSNVY 297
A R L+ NG+ + EQ R + E+R + ++ +++
Sbjct: 75 AAERILQTYNGT-------------QMPGTEQTFRLNWASFGIGERRPDAGPEH---SIF 118
Query: 298 VKNIDDDVTDEELKAHF-SQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFH 355
V ++ DVTD L+ F + ++ AKV+ D G +KG+GFV F E ++A+ +
Sbjct: 119 VGDLSPDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFGDENERNRAMTEMN 178
Query: 356 GYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIV 414
G +P+ ++ A K + A Q QYA +A I YP YT P +V
Sbjct: 179 GVFCSTRPMRISAATPK--KTAAYQQQYA---------TAKAI---YPLPAYTAPVQVV 223
>gi|440297981|gb|ELP90622.1| nucleolysin TIA-1, putative [Entamoeba invadens IP1]
Length = 305
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 132/261 (50%), Gaps = 16/261 (6%)
Query: 104 VKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGT 163
V L ES+D L +F G+++SCK+ + G +GF++F +A A EN+NG
Sbjct: 43 VAGLHESVDETLLSRIFSIVGHVVSCKIMKDKTGTHARYGFIEFIDHTTAEFAKENMNGR 102
Query: 164 TVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIA 223
V K + V + S S A LF+ L ++VT E L + F+KFG+++ +
Sbjct: 103 LVYGKELKV-NWTHDSQ----SDAKGSFKLFVGGLHTEVTNEILYQNFAKFGRVSDARVL 157
Query: 224 R-DENGTSRGFGFVNFDNPDDARRALEAMNGSVIGS---KVLYAARAQKKAEREQILRHQ 279
R ++G S+G+GFV F +DA A++ MNG I KV + QK E ++
Sbjct: 158 RYSQSGKSQGYGFVTFIRKEDAETAMQMMNGEKIQGRTVKVNWGTATQKPTE---TVKRG 214
Query: 280 FEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFV 339
F+E +E +NVYV I + + ++ F G I K+MR + K +GFV
Sbjct: 215 FDEISRE--TSNTNNNVYVGGIPKETEESTMRKLFGDFGEIIDLKIMRTDA--EKAYGFV 270
Query: 340 CFSSPEEASKAVNTFHGYMLH 360
F S + A+KA+ +GY L+
Sbjct: 271 RFVSHDNATKAIMMLNGYQLN 291
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 15/252 (5%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
S++V LH V + L FS + S ++ KD T G YG++ F+ A A E
Sbjct: 40 SVHVAGLHESVDETLLSRIFSIVGHVVSCKIMKDKT-GTHARYGFIEFIDHTTAEFAKEN 98
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N ++GK L+++W+ D + G LFV L + N L + F FG + +V
Sbjct: 99 MNGRLVYGKELKVNWT-HDSQSDAKGSFKLFVGGLHTEVTNEILYQNFAKFGRVSDARVL 157
Query: 133 T-SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG---------RFIKKS-DR 181
S+ GKS+G+GFV F +E A A++ +NG + + + V +K+ D
Sbjct: 158 RYSQSGKSQGYGFVTFIRKEDAETAMQMMNGEKIQGRTVKVNWGTATQKPTETVKRGFDE 217
Query: 182 VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + N+++ + + E + + F FG+I L I R + + +GFV F +
Sbjct: 218 ISRETSNTNNNVYVGGIPKETEESTMRKLFGDFGEIIDLKIMRTD--AEKAYGFVRFVSH 275
Query: 242 DDARRALEAMNG 253
D+A +A+ +NG
Sbjct: 276 DNATKAIMMLNG 287
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 26/174 (14%)
Query: 198 LDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG 257
L V E L FS G + S I +D+ GT +GF+ F + A A E MNG ++
Sbjct: 46 LHESVDETLLSRIFSIVGHVVSCKIMKDKTGTHARYGFIEFIDHTTAEFAKENMNGRLVY 105
Query: 258 SKVL---YAARAQKKAEREQILRHQFEEKRKERILKYKGS-NVYVKNIDDDVTDEELKAH 313
K L + +Q A KGS ++V + +VT+E L +
Sbjct: 106 GKELKVNWTHDSQSDA---------------------KGSFKLFVGGLHTEVTNEILYQN 144
Query: 314 FSQCGTITSAKVMR-DEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
F++ G ++ A+V+R + G ++G+GFV F E+A A+ +G + + + V
Sbjct: 145 FAKFGRVSDARVLRYSQSGKSQGYGFVTFIRKEDAETAMQMMNGEKIQGRTVKV 198
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T+ T ++YVG + + + + F +F + +++ + T YG+V F+S +A
Sbjct: 222 TSNTNNNVYVGGIPKETEESTMRKLFGDFGEIIDLKIMR---TDAEKAYGFVRFVSHDNA 278
Query: 67 IRAIEVKNHTQLHGKMLRISW 87
+AI + N QL+G L W
Sbjct: 279 TKAIMMLNGYQLNGGCLNCMW 299
>gi|213625217|gb|AAI70091.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 183/383 (47%), Gaps = 40/383 (10%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TA+ S+++G+L+ + EL DA EF S ++ + +D G + +GYV+F S +
Sbjct: 278 TASEGFSIFIGNLNSTLDFDELKDALREFFSKKNLTI-QDVRIGGTKKFGYVDFSSEEEV 336
Query: 67 IRAIEVKNHTQLHGKMLRISWSC-----------RDPDARKSGVANLFVKNLIESIDNVR 115
+A+++ ++ G ++I + ++ D+R LFVKN+ S
Sbjct: 337 EKALKLSGK-KILGLEVKIEKAVAFDKNKNAENKKERDSR-----TLFVKNIPYSTSAEE 390
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
LQE+F+N +I ++ T DG +KG +V+F TE AN A+E G + + ++V
Sbjct: 391 LQEIFENAKDI---RIPTGNDGSNKGIAYVEFSTEAEANKALEEKQGAEIEGRSLFVDFT 447
Query: 176 IKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
+KS PA L + NL TE+ L E F K S+ I +++ G ++GF
Sbjct: 448 GEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFE---KATSIRIPQNQ-GRAKGF 503
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
FV F + +DA+ A+++ N + + + + +Q + + K
Sbjct: 504 AFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSK---------- 553
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
++V+ + +D T+E LK F G+I + V + G +KGFGFV FSS E+A A
Sbjct: 554 -TLFVRGLSEDTTEETLKEAFD--GSINARIVTDRDTGASKGFGFVDFSSAEDAKAAREA 610
Query: 354 FHGYMLHRKPLYVAIAQRKEDRQ 376
+ + + A+ K D Q
Sbjct: 611 MEDGEIDGNKVTLDFAKPKGDSQ 633
>gi|213623691|gb|AAI70089.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 183/383 (47%), Gaps = 40/383 (10%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TA+ S+++G+L+ + EL DA EF S ++ + +D G + +GYV+F S +
Sbjct: 278 TASEGFSIFIGNLNSTLDFDELKDALREFFSKKNLTI-QDVRIGGTKKFGYVDFSSEEEV 336
Query: 67 IRAIEVKNHTQLHGKMLRISWSC-----------RDPDARKSGVANLFVKNLIESIDNVR 115
+A+++ ++ G ++I + ++ D+R LFVKN+ S
Sbjct: 337 EKALKLSGK-KILGLEVKIEKAVAFDKNKNAENKKERDSR-----TLFVKNIPYSTSAEE 390
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
LQE+F+N +I ++ T DG +KG +V+F TE AN A+E G + + ++V
Sbjct: 391 LQEIFENAKDI---RIPTGNDGSNKGIAYVEFSTEAEANKALEEKQGAEIEGRSLFVDFT 447
Query: 176 IKKSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGF 233
+KS PA L + NL TE+ L E F K S+ I +++ G ++GF
Sbjct: 448 GEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFE---KATSIRIPQNQ-GRAKGF 503
Query: 234 GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKG 293
FV F + +DA+ A+++ N + + + + +Q + + K
Sbjct: 504 AFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGGRGGSVQSK---------- 553
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
++V+ + +D T+E LK F G+I + V + G +KGFGFV FSS E+A A
Sbjct: 554 -TLFVRGLSEDTTEETLKEAFD--GSINARIVTDRDTGASKGFGFVDFSSSEDAKAAREA 610
Query: 354 FHGYMLHRKPLYVAIAQRKEDRQ 376
+ + + A+ K D Q
Sbjct: 611 MEDGEIDGNKVTLDFAKPKGDSQ 633
>gi|449513289|ref|XP_004164285.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
RBP47B'-like [Cucumis sativus]
Length = 427
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 146/309 (47%), Gaps = 45/309 (14%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P T +L++GDL V + L F+ + S+++ ++ TG+ YG+V F+S
Sbjct: 13 PTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 72
Query: 65 DAIRAIEVKNHTQLHG--KMLRISWSC-----RDPDARKSGVANLFVKNLIESIDNVRLQ 117
A R ++ N TQ+ G + R++W+ R PDA ++FV +L + + LQ
Sbjct: 73 AAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE--HSIFVGDLAPDVTDYLLQ 130
Query: 118 EMFQ-NFGNIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
E F+ + ++ KV T + G+SKG+GFV+F E N A+ +NG + + +
Sbjct: 131 ETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGXYCSTRPMRISAA 190
Query: 176 IKK----------------SDRVLPSPA-------------AKYTNLFMKNLDSDVTEEH 206
K ++ + P PA A T +F+ NLD ++TEE
Sbjct: 191 TPKKPLVFSSNTVXVKVMNNESMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEE 250
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L + F +FG+IA + I +G GFV F A A++ M G +IG +V+ +
Sbjct: 251 LKQTFLQFGEIAYVKIP-----AGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWG 305
Query: 267 QKKAEREQI 275
+ A ++ +
Sbjct: 306 RNPAAKQDL 314
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 129/285 (45%), Gaps = 26/285 (9%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
V L++ +L +D L F + G +IS K+ ++ G+ +G+GFV+F + +A +
Sbjct: 19 VRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERIL 78
Query: 158 ENLNGTTV-GDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF-SKFG 215
+ NGT + G ++ + + A ++F+ +L DVT+ L E F +++
Sbjct: 79 QTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYP 138
Query: 216 KIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKA---- 270
+ + D N G S+G+GFV F + ++ RA+ MNG ++ + + A K
Sbjct: 139 SVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGXYCSTRPMRISAATPKKPLVF 198
Query: 271 EREQILRHQFEEKRKERILKYKGS-------------NVYVKNIDDDVTDEELKAHFSQC 317
+ + + Y S ++V N+D ++T+EELK F Q
Sbjct: 199 SSNTVXVKVMNNESMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTFLQF 258
Query: 318 GTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
G I K+ KG GFV F + A +A+ G ++ ++
Sbjct: 259 GEIAYVKIP-----AGKGCGFVQFGTRASAEEAIQKMQGKIIGQQ 298
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 24/198 (12%)
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPD 242
P+ + L++ +L V E +L F+ G++ S+ I R++ G G+GFV F +
Sbjct: 13 PTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 72
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE-----EKRKERILKYKGSNVY 297
A R L+ NG+ + EQ R + E+R + ++ +++
Sbjct: 73 AAERILQTYNGT-------------QMPGTEQTFRLNWASFGIGERRPDAGPEH---SIF 116
Query: 298 VKNIDDDVTDEELKAHF-SQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFH 355
V ++ DVTD L+ F +Q ++ AKV+ D G +KG+GFV F+ E ++A++ +
Sbjct: 117 VGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMN 176
Query: 356 GYMLHRKPLYVAIAQRKE 373
G +P+ ++ A K+
Sbjct: 177 GXYCSTRPMRISAATPKK 194
>gi|14318545|ref|NP_116678.1| Pes4p [Saccharomyces cerevisiae S288c]
gi|1172434|sp|P39684.2|PES4_YEAST RecName: Full=Protein PES4; AltName: Full=DNA polymerase epsilon
suppressor 4
gi|836778|dbj|BAA09262.1| DNA polymerase epsilon suppressor 4 [Saccharomyces cerevisiae]
gi|151940784|gb|EDN59171.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345636|gb|EDZ72395.1| YFR023Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256268849|gb|EEU04202.1| Pes4p [Saccharomyces cerevisiae JAY291]
gi|259146215|emb|CAY79474.1| Pes4p [Saccharomyces cerevisiae EC1118]
gi|285811918|tpg|DAA12463.1| TPA: Pes4p [Saccharomyces cerevisiae S288c]
gi|392299695|gb|EIW10788.1| Pes4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 611
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/381 (27%), Positives = 173/381 (45%), Gaps = 63/381 (16%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++GDLH VT+ L F ++ S S +VC DS T +S +GY+NF +A +A+E
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ-----EMFQNFGNIIS 128
N+T+++GK +RI S R+ RK+ N+F NL ++N L + F +G I+S
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNL--PLNNPLLTTRVFYDTFSRYGKILS 210
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
CK+ + +D GFV FE E++A I+ N T+ K+I G K R +P+
Sbjct: 211 CKLDSRKDI-----GFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFET 265
Query: 189 KYTNL-----------------------------------FMKNLDSDVTEEHLVEKFSK 213
+ + L F+KNL + T + ++ FS+
Sbjct: 266 QKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSE 325
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
G I S+ ++ + + FV + N D+ +A++ N K L RAQ K ER
Sbjct: 326 VGPIKSIYLS-NATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERA 384
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+ + Q K S ++++N+ V ++E + I K+ D N
Sbjct: 385 KFIESQ------------KISTLFLENL-SAVCNKEFLKYLCHQENIRPFKIQIDGYDEN 431
Query: 334 KGF--GFVCFSSPEEASKAVN 352
GF+ F + E+A++ N
Sbjct: 432 SSTYSGFIKFRNFEDATRIFN 452
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 141/314 (44%), Gaps = 49/314 (15%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSKGHGFVQFETEESANAAIENL 160
LF+ +L E++ L+ +F+ + + +S KV S KS GHG++ FE +E A A+E L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKY------TNLFMKNLDSD---VTEEHLVEKF 211
N T V K I R++PS TN+F NL + +T + F
Sbjct: 153 NYTKVNGKEI----------RIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTF 202
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG-SVIGSKVLYAARAQKKA 270
S++GKI S + + + GFV F++ AR ++ N S G K+L K+
Sbjct: 203 SRYGKILSCKL-----DSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEV 257
Query: 271 -------------------EREQILRHQF---EEKRKERILKYKGSNVYVKNIDDDVTDE 308
E+EQ L + +K + I +++++KN+ T +
Sbjct: 258 RSVPNFETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRD 317
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
++ FS+ G I S + + + + FV + + ++ KA+ ++ + K L V
Sbjct: 318 DILNFFSEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTR 376
Query: 369 AQRKEDRQAHLQLQ 382
AQ KE+R ++ Q
Sbjct: 377 AQDKEERAKFIESQ 390
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 6/163 (3%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+F+KNL + F G I S ++ + K FV ++ + AI+ N
Sbjct: 305 IFIKNLPTITTRDDILNFFSEVGPIKSIYLSNATKVKYLW-AFVTYKNSSDSEKAIKRYN 363
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
K++ V R K +R + K + LF++NL S V + ++ I
Sbjct: 364 NFYFRGKKLLVTRAQDKEERAKFIESQKISTLFLENL-SAVCNKEFLKYLCHQENIRPFK 422
Query: 222 I---ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
I DEN ++ GF+ F N +DA R +N ++G ++
Sbjct: 423 IQIDGYDENSSTYS-GFIKFRNFEDATRIFNFLNNRLVGGSIV 464
>gi|190406596|gb|EDV09863.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 611
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/381 (27%), Positives = 173/381 (45%), Gaps = 63/381 (16%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++GDLH VT+ L F ++ S S +VC DS T +S +GY+NF +A +A+E
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ-----EMFQNFGNIIS 128
N+T+++GK +RI S R+ RK+ N+F NL ++N L + F +G I+S
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNL--PLNNPLLTTRVFYDTFSRYGKILS 210
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
CK+ + +D GFV FE E++A I+ N T+ K+I G K R +P+
Sbjct: 211 CKLDSRKDI-----GFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFET 265
Query: 189 KYTNL-----------------------------------FMKNLDSDVTEEHLVEKFSK 213
+ + L F+KNL + T + ++ FS+
Sbjct: 266 QKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSE 325
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
G I S+ ++ + + FV + N D+ +A++ N K L RAQ K ER
Sbjct: 326 VGPIKSIYLS-NATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERA 384
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+ + Q K S ++++N+ V ++E + I K+ D N
Sbjct: 385 KFIESQ------------KISTLFLENL-SAVCNKEFLKYLCHQENIRPFKIQIDGYDEN 431
Query: 334 KGF--GFVCFSSPEEASKAVN 352
GF+ F + E+A++ N
Sbjct: 432 SSTYSGFIKFRNFEDATRIFN 452
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 141/314 (44%), Gaps = 49/314 (15%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSKGHGFVQFETEESANAAIENL 160
LF+ +L E++ L+ +F+ + + +S KV S KS GHG++ FE +E A A+E L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKY------TNLFMKNLDSD---VTEEHLVEKF 211
N T V K I R++PS TN+F NL + +T + F
Sbjct: 153 NYTKVNGKEI----------RIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTF 202
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG-SVIGSKVLYAARAQKKA 270
S++GKI S + + + GFV F++ AR ++ N S G K+L K+
Sbjct: 203 SRYGKILSCKL-----DSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEV 257
Query: 271 -------------------EREQILRHQF---EEKRKERILKYKGSNVYVKNIDDDVTDE 308
E+EQ L + +K + I +++++KN+ T +
Sbjct: 258 RSVPNFETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRD 317
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
++ FS+ G I S + + + + FV + + ++ KA+ ++ + K L V
Sbjct: 318 DILNFFSEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTR 376
Query: 369 AQRKEDRQAHLQLQ 382
AQ KE+R ++ Q
Sbjct: 377 AQDKEERAKFIESQ 390
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 6/163 (3%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+F+KNL + F G I S ++ + K FV ++ + AI+ N
Sbjct: 305 IFIKNLPTITTRDDILNFFSEVGPIKSIYLSNATKVKYLW-AFVTYKNSSDSEKAIKRYN 363
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
K++ V R K +R + K + LF++NL S V + ++ I
Sbjct: 364 NFYFRGKKLLVTRAQDKEERAKFIESQKISTLFLENL-SAVCNKEFLKYLCHQENIRPFK 422
Query: 222 I---ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
I DEN ++ GF+ F N +DA R +N ++G ++
Sbjct: 423 IQIDGYDENSSTYS-GFIKFRNFEDATRIFNFLNNRLVGGSIV 464
>gi|452239|dbj|BAA05461.1| PES4 PAB-like protein [Saccharomyces cerevisiae]
Length = 555
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 174/383 (45%), Gaps = 67/383 (17%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++GDLH VT+ L F ++ S S +VC DS T +S +GY+NF +A +A+E
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCIDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ-----EMFQNFGNIIS 128
N+T+++GK +RI S R+ RK+ N+F NL ++N L + F +G I+S
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNL--PLNNPLLTTRVFYDTFSRYGKILS 210
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
CK+ + +D GFV FE E++A I+ N T+ K+I G K R +P+
Sbjct: 211 CKLDSRKDI-----GFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFET 265
Query: 189 KYTNL-----------------------------------FMKNLDSDVTEEHLVEKFSK 213
+ + L F+KNL + T + ++ FS+
Sbjct: 266 QKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSE 325
Query: 214 FGKIASLLIARDENGTSRGF--GFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
G I S+ ++ N T + FV + N D+ +A++ N K L RAQ K E
Sbjct: 326 VGPIKSIYLS---NATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEE 382
Query: 272 REQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG 331
R + + Q K S ++++N+ V ++E + I K+ D
Sbjct: 383 RAKFIESQ------------KISTLFLENL-SAVCNKEFLKYLCHQENIRPFKIQIDGYD 429
Query: 332 INKGF--GFVCFSSPEEASKAVN 352
N GF+ F + E+A++ N
Sbjct: 430 ENSSTYSGFIKFRNFEDATRIFN 452
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 141/314 (44%), Gaps = 49/314 (15%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSKGHGFVQFETEESANAAIENL 160
LF+ +L E++ L+ +F+ + + +S KV S KS GHG++ FE +E A A+E L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCIDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKY------TNLFMKNLDSD---VTEEHLVEKF 211
N T V K I R++PS TN+F NL + +T + F
Sbjct: 153 NYTKVNGKEI----------RIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTF 202
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG-SVIGSKVLYAARAQKKA 270
S++GKI S + + + GFV F++ AR ++ N S G K+L K+
Sbjct: 203 SRYGKILSCKL-----DSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEV 257
Query: 271 -------------------EREQILRHQF---EEKRKERILKYKGSNVYVKNIDDDVTDE 308
E+EQ L + +K + I +++++KN+ T +
Sbjct: 258 RSVPNFETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRD 317
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
++ FS+ G I S + + + + FV + + ++ KA+ ++ + K L V
Sbjct: 318 DILNFFSEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTR 376
Query: 369 AQRKEDRQAHLQLQ 382
AQ KE+R ++ Q
Sbjct: 377 AQDKEERAKFIESQ 390
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 6/163 (3%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+F+KNL + F G I S ++ + K FV ++ + AI+ N
Sbjct: 305 IFIKNLPTITTRDDILNFFSEVGPIKSIYLSNATKVKYLW-AFVTYKNSSDSEKAIKRYN 363
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
K++ V R K +R + K + LF++NL S V + ++ I
Sbjct: 364 NFYFRGKKLLVTRAQDKEERAKFIESQKISTLFLENL-SAVCNKEFLKYLCHQENIRPFK 422
Query: 222 I---ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
I DEN ++ GF+ F N +DA R +N ++G ++
Sbjct: 423 IQIDGYDENSSTYS-GFIKFRNFEDATRIFNFLNNRLVGGSIV 464
>gi|302308066|ref|NP_984845.2| AEL016Cp [Ashbya gossypii ATCC 10895]
gi|299789279|gb|AAS52669.2| AEL016Cp [Ashbya gossypii ATCC 10895]
gi|374108067|gb|AEY96974.1| FAEL016Cp [Ashbya gossypii FDAG1]
Length = 678
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 55/306 (17%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
PT T+ +L++GDL VT+ L D F++F S S ++C DS T +S YGY+NF +
Sbjct: 108 PTLTSKKLVALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLGYGYLNFSNE 167
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ-----E 118
DA R IE N+ + G+ +RI S R+ RK+ N+F NL ++N+ L +
Sbjct: 168 EDAERVIEEFNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNL--PLENLALTTRVFYD 225
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG----R 174
F+ FG I+SCK+ + K GFV FE + +A AI NG I G R
Sbjct: 226 AFKKFGKILSCKL-----DRRKNIGFVYFEKDSAAKQAIAEYNGKEFFGNNILCGIHFDR 280
Query: 175 FIKKS-----------DRVL---------------------PSPAAKYTNLFMKNLDSDV 202
++KS D L P P A +F+KNL +
Sbjct: 281 NVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNA----VFIKNLPLNP 336
Query: 203 TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLY 262
+ L++ FS+ G + S+ + + + + + F+ F DA+ A++ +N S + + +
Sbjct: 337 DSDLLLDYFSQIGPVKSIFTS-NVSKLNSAWAFITFKKGSDAQDAIDNLNHSQLLGRTIE 395
Query: 263 AARAQK 268
+RAQK
Sbjct: 396 LSRAQK 401
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 136/325 (41%), Gaps = 56/325 (17%)
Query: 82 MLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSK 140
++++ S P + LF+ +L E + L++ F F + +S K+ S KS
Sbjct: 98 IVKLGRSKDSPTLTSKKLVALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSL 157
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY------TNLF 194
G+G++ F EE A IE N + + + R++PS + TN+F
Sbjct: 158 GYGYLNFSNEEDAERVIEEFNYIPIFGREV----------RIMPSLRNSFYRKNIGTNVF 207
Query: 195 MKNL---DSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL + +T + F KFGKI S + R +N GFV F+ A++A+
Sbjct: 208 FSNLPLENLALTTRVFYDAFKKFGKILSCKLDRRKN-----IGFVYFEKDSAAKQAIAEY 262
Query: 252 NG-SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI---------------------L 289
NG G+ +L + + +FE KRK R+
Sbjct: 263 NGKEFFGNNILCGIHFDRNVRKSP----EFE-KRKARLEDMTLVKESLVMDNNQEIPSGS 317
Query: 290 KYKGSN---VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEE 346
K KG + V++KN+ + + L +FSQ G + S K +N + F+ F +
Sbjct: 318 KMKGPHPNAVFIKNLPLNPDSDLLLDYFSQIGPVKSIFTSNVSK-LNSAWAFITFKKGSD 376
Query: 347 ASKAVNTFHGYMLHRKPLYVAIAQR 371
A A++ + L + + ++ AQ+
Sbjct: 377 AQDAIDNLNHSQLLGRTIELSRAQK 401
>gi|123407360|ref|XP_001302992.1| embryonic poly [Trichomonas vaginalis G3]
gi|121884333|gb|EAX90062.1| embryonic poly, putative [Trichomonas vaginalis G3]
Length = 426
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 16/235 (6%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++VGDL V + + + F ++ S S V + +V F S A RAI
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 74 NHTQLHGKMLRISWSCRDPDAR---KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N+T+L G +RI WS DP + K+ V LF++ L E+I+ +L + F NFG I+SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSCK 125
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY 190
+ + +GKS+G+GF+ F E+ A A +L ++ K I + F +K R +P +
Sbjct: 126 IPLT-NGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQI-EFYQKPTR--KNPEETF 181
Query: 191 TNLFMKNLDSDV--TEEHLVEKFSKFGKI-----ASLLIARDENGTSRGFGFVNF 238
TN+F+K L +D+ T++ L F +FG A+ I R E+G+S FGF++F
Sbjct: 182 TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFLHF 236
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 117/252 (46%), Gaps = 27/252 (10%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFETEESANAAIENL 160
+FV +L S+D ++E+F+++G+ S V + K FV FE+ E A AI +
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASL 220
N T + I + + R + + LF++ LD ++ L + FS FG+I S
Sbjct: 68 NYTKLDGVPIRILWSDPGTKRAIKNNVGA---LFIRGLDENIEVSQLHDAFSNFGEIVSC 124
Query: 221 LIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
I NG SRG+GF+ F DDA+RA + + I K + QI +F
Sbjct: 125 KIPLT-NGKSRGYGFITFYKEDDAKRAKTDLADASINGKPI------------QI---EF 168
Query: 281 EEKRKERILKYKGSNVYVKNIDDDV--TDEELKAHFSQCGTIT-----SAKVMRDEKGIN 333
+K + + +NV++K + D+ TD++L F + G + + R E G +
Sbjct: 169 YQKPTRKNPEETFTNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSS 228
Query: 334 KGFGFVCFSSPE 345
FGF+ F E
Sbjct: 229 CEFGFLHFKHHE 240
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 83/186 (44%), Gaps = 23/186 (12%)
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIAS-LLIARDENGTSRGFGFVNFDNPDDARRAL 248
+ +F+ +L V E + E F +G S + + + F FV F++ + A+RA+
Sbjct: 5 WKEVFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAI 64
Query: 249 EAMNGSVIGS---KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+N + + ++L++ K+A + + ++++ +D+++
Sbjct: 65 SEVNYTKLDGVPIRILWSDPGTKRAIKNNV------------------GALFIRGLDENI 106
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
+L FS G I S K+ G ++G+GF+ F ++A +A ++ KP+
Sbjct: 107 EVSQLHDAFSNFGEIVSCKIPLT-NGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQ 165
Query: 366 VAIAQR 371
+ Q+
Sbjct: 166 IEFYQK 171
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 135 EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
E +SKG GFV F+T+ESA A+EN T + K Y+G F K +R
Sbjct: 280 EPHESKGFGFVLFKTKESAQNALENAVITPLNGKTPYIGLFKMKEER 326
>gi|349577937|dbj|GAA23104.1| K7_Pes4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 611
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 173/381 (45%), Gaps = 63/381 (16%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
L++GDLH VT+ L + F ++ S S +VC DS T +S +GY+NF +A +A+E
Sbjct: 93 LFIGDLHETVTEETLKEIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ-----EMFQNFGNIIS 128
N+T+++GK +RI S R+ RK+ N+F NL ++N L + F +G I+S
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNL--PLNNPLLTTRVFYDTFSRYGKILS 210
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
CK+ + +D GFV FE E++A I+ N T+ K+I G K R +P+
Sbjct: 211 CKLDSRKDI-----GFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFET 265
Query: 189 KYTNL-----------------------------------FMKNLDSDVTEEHLVEKFSK 213
+ + L F+KNL + T + ++ FS+
Sbjct: 266 QKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSE 325
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
G I S+ ++ + + FV + N D+ +A++ N K L RAQ K ER
Sbjct: 326 VGPIKSIYLS-NATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERA 384
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
+ + Q K S ++++N+ V ++E + I K+ D N
Sbjct: 385 KFIESQ------------KISTLFLENL-SAVCNKEFLKYLCHQENIRPFKIQIDGYDEN 431
Query: 334 KGF--GFVCFSSPEEASKAVN 352
G + F + E+A++ N
Sbjct: 432 SSTYSGLIKFRNFEDATRIFN 452
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 142/314 (45%), Gaps = 49/314 (15%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVAT-SEDGKSKGHGFVQFETEESANAAIENL 160
LF+ +L E++ L+E+F+ + + +S KV S KS GHG++ FE +E A A+E L
Sbjct: 93 LFIGDLHETVTEETLKEIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKY------TNLFMKNLDSD---VTEEHLVEKF 211
N T V K I R++PS TN+F NL + +T + F
Sbjct: 153 NYTKVNGKEI----------RIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTF 202
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG-SVIGSKVLYAARAQKKA 270
S++GKI S + + + GFV F++ AR ++ N S G K+L K+
Sbjct: 203 SRYGKILSCKL-----DSRKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEV 257
Query: 271 -------------------EREQILRHQF---EEKRKERILKYKGSNVYVKNIDDDVTDE 308
E+EQ L + +K + I +++++KN+ T +
Sbjct: 258 RSVPNFETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRD 317
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
++ FS+ G I S + + + + FV + + ++ KA+ ++ + K L V
Sbjct: 318 DILNFFSEVGPIKSI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTR 376
Query: 369 AQRKEDRQAHLQLQ 382
AQ KE+R ++ Q
Sbjct: 377 AQDKEERAKFIESQ 390
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 42/245 (17%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
LF+ +L VTEE L E F K+ S + D S G G++NF++ ++A +A+E +
Sbjct: 93 LFIGDLHETVTEETLKEIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI---DDDVTDE 308
N + + K + + R R F G+NV+ N+ + +T
Sbjct: 153 NYTKVNGKEIRIMPSL----RNTTFRKNF------------GTNVFFSNLPLNNPLLTTR 196
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
FS+ G I S K+ D + K GFV F + A + ++ K + I
Sbjct: 197 VFYDTFSRYGKILSCKL--DSR---KDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGI 251
Query: 369 AQRKEDRQA-HLQLQYA----------------QHMAGIEGSSANVIPSGYPSLYYTTPP 411
KE R + + Q + +H G + S N+ S S++ P
Sbjct: 252 HFDKEVRSVPNFETQKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLP 311
Query: 412 GIVSQ 416
I ++
Sbjct: 312 TITTR 316
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+F+KNL + F G I S ++ + K FV ++ + AI+ N
Sbjct: 305 IFIKNLPTITTRDDILNFFSEVGPIKSIYLSNATKVKYLW-AFVTYKNSSDSEKAIKRYN 363
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
K++ V R K +R + K + LF++NL S V + ++ I
Sbjct: 364 NFYFRGKKLLVTRAQDKEERAKFIESQKISTLFLENL-SAVCNKEFLKYLCHQENIRPFK 422
Query: 222 I---ARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
I DEN ++ G + F N +DA R +N ++G ++
Sbjct: 423 IQIDGYDENSSTYS-GLIKFRNFEDATRIFNFLNNRLVGGSIV 464
>gi|410730871|ref|XP_003980256.1| hypothetical protein NDAI_0G05970 [Naumovozyma dairenensis CBS 421]
gi|401780433|emb|CCK73580.1| hypothetical protein NDAI_0G05970 [Naumovozyma dairenensis CBS 421]
Length = 611
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 144/303 (47%), Gaps = 44/303 (14%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TTP LY+G L DVT+ LF+AF ++K+LAS+++C+DS T S YGY+NF + +A +
Sbjct: 100 TTP--LYIGGLSKDVTEETLFEAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEATK 157
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNL-IES--IDNVRLQEMFQNFGN 125
I+ N+T L G ++I S R+ RK+ N+F NL +E+ + + + F+ +G
Sbjct: 158 LIDDYNYTNLFGNEIKIMPSMRNTLYRKNIGTNVFFSNLPLENKQLTTRKFYDTFKKYGE 217
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPS 185
I+SCK+ + K GFV FE +++A AI++ N +I G K R P
Sbjct: 218 ILSCKLDS-----RKNIGFVYFENDKAALQAIKDYNNKVFFGNKIICGIHFDKEIRTFPD 272
Query: 186 PAAKYTNL---------------------------------FMKNLDSDVTEEHLVEKFS 212
+ + L F+KNL ++ +++ FS
Sbjct: 273 FDKRKSYLDSQLIIEDELEAGGEFLKFKQEPKCIVPHPNAVFIKNLPMTTNDDEILDFFS 332
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
K G + S+ ++ S + FV + D A++ ++ + + + +A+ K
Sbjct: 333 KIGPVKSVFASQVLKYNSL-WAFVTYKKSSDTELAIQKLDQTYFKDRAISVTKAKSKKTN 391
Query: 273 EQI 275
+I
Sbjct: 392 FKI 394
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 27/192 (14%)
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRA 247
K T L++ L DVTEE L E F + +AS+ I RD S G+G++NF N +A +
Sbjct: 99 KTTPLYIGGLSKDVTEETLFEAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEATKL 158
Query: 248 LEAMN-GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI---DD 303
++ N ++ G+++ + R+ I G+NV+ N+ +
Sbjct: 159 IDDYNYTNLFGNEIKIMPSMRNTLYRKNI-----------------GTNVFFSNLPLENK 201
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+T + F + G I S K+ D + K GFV F + + A +A+ ++ +
Sbjct: 202 QLTTRKFYDTFKKYGEILSCKL--DSR---KNIGFVYFENDKAALQAIKDYNNKVFFGNK 256
Query: 364 LYVAIAQRKEDR 375
+ I KE R
Sbjct: 257 IICGIHFDKEIR 268
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 126/306 (41%), Gaps = 53/306 (17%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAIENL 160
L++ L + + L E F+++ + S K+ S +S G+G++ F A I++
Sbjct: 103 LYIGGLSKDVTEETLFEAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEATKLIDDY 162
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKY------TNLFMKNL---DSDVTEEHLVEKF 211
N T + I +++PS TN+F NL + +T + F
Sbjct: 163 NYTNLFGNEI----------KIMPSMRNTLYRKNIGTNVFFSNLPLENKQLTTRKFYDTF 212
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVI-GSKVLYAARAQKKA 270
K+G+I S + + + GFV F+N A +A++ N V G+K++ K+
Sbjct: 213 KKYGEILSCKL-----DSRKNIGFVYFENDKAALQAIKDYNNKVFFGNKIICGIHFDKEI 267
Query: 271 -------EREQILRHQF----EEKRKERILKYKG---------SNVYVKNIDDDVTDEEL 310
+R+ L Q E + LK+K + V++KN+ D+E+
Sbjct: 268 RTFPDFDKRKSYLDSQLIIEDELEAGGEFLKFKQEPKCIVPHPNAVFIKNLPMTTNDDEI 327
Query: 311 KAHFSQCGTITS---AKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
FS+ G + S ++V++ N + FV + + A+ + + V
Sbjct: 328 LDFFSKIGPVKSVFASQVLK----YNSLWAFVTYKKSSDTELAIQKLDQTYFKDRAISVT 383
Query: 368 IAQRKE 373
A+ K+
Sbjct: 384 KAKSKK 389
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 179/413 (43%), Gaps = 60/413 (14%)
Query: 1 MAVVPPTATTPA------------------SLYVGDLHPDVTDGELFDAFSEFKSLASVR 42
+A VPP+ + P+ SLYV +L +T EL F F + +
Sbjct: 279 VAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSLSMTKEELLQHFLPFGKIIDAK 338
Query: 43 VCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGV--- 99
V +D TG + YG+V + + H+A AI N + GK + + S P S V
Sbjct: 339 VPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKMEVRVSGVSPALSNSAVESH 398
Query: 100 -----------ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE---DGKSKGHGFV 145
ANL+V N+ SID +L E+F FG I +VA + GK + +GFV
Sbjct: 399 TDARLIKEIDMANLYVCNIPTSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGR-YGFV 457
Query: 146 QFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV---------LPSPAAKYTNLFMK 196
+F + A AI ++G V + + V R S +PSP + +++
Sbjct: 458 KFADSQCAAEAITLMDGALVEGETLVV-RVAGLSSSASSPAVHGLPIPSPEINKSRIYIT 516
Query: 197 NLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVI 256
NL + +V+ F FG+I+ +++ + + V + + A +A++ M+G +I
Sbjct: 517 NLPRSTNADMMVKLFVPFGQISKVVMNLE-------YSLVYYADVASAVKAIKHMDGYMI 569
Query: 257 GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQ 316
G K L R+ H + + + + +NV+V I V ++L F
Sbjct: 570 GGKRLVVRRSDSCP--TDAAGHTSTQSLGKEVKEIDMANVFVGRIPSTVNGDQLVELFRP 627
Query: 317 CGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
G I +V + ++G+G F+ P A+ A++ +GY + L V +A
Sbjct: 628 FGQIVQVRVFQ-----HQGYGMFRFNDPFSAAAAIDHMNGYQIGGSALVVRVA 675
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 115/435 (26%), Positives = 188/435 (43%), Gaps = 65/435 (14%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTT----GRSTCYGYVNFLSPHDAI 67
A+LYV ++ + +L + F F + RV T GR YG+V F A
Sbjct: 410 ANLYVCNIPTSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGR---YGFVKFADSQCAA 466
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGV------------ANLFVKNLIESIDNVR 115
AI + + + G+ L + + A V + +++ NL S +
Sbjct: 467 EAITLMDGALVEGETLVVRVAGLSSSASSPAVHGLPIPSPEINKSRIYITNLPRSTNADM 526
Query: 116 LQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
+ ++F FG I KV + + + V + SA AI++++G +G KR+ V
Sbjct: 527 MVKLFVPFGQI--SKVVMNLE-----YSLVYYADVASAVKAIKHMDGYMIGGKRLVV--- 576
Query: 176 IKKSDRVLPSPAAKYT---------------NLFMKNLDSDVTEEHLVEKFSKFGKIASL 220
++SD P+ AA +T N+F+ + S V + LVE F FG+I +
Sbjct: 577 -RRSDSC-PTDAAGHTSTQSLGKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQV 634
Query: 221 LIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ-------KKAERE 273
+ + + G+G F++P A A++ MNG IG L A A +
Sbjct: 635 RVFQHQ-----GYGMFRFNDPFSAAAAIDHMNGYQIGGSALVVRVAGLPNPGDFSAATDD 689
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGI 332
L+ E R+ + +N+YV ++ +T E+L F CG IT A+V+ D GI
Sbjct: 690 LKLQMPGNEGRQIDM-----ANLYVCHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGI 744
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ-RKEDRQAHLQLQYAQHMAGIE 391
+KGFGFV F+ A+ A+ +GY L L V IA D +++ Y+Q
Sbjct: 745 SKGFGFVRFADTYSAAVALTHMNGYPLEGHILEVRIAGVHPSDMGSYMTQLYSQFTYPDP 804
Query: 392 GSSANVIPSGYPSLY 406
+ IP+ Y Y
Sbjct: 805 STMVVGIPTSYWPYY 819
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 162/393 (41%), Gaps = 60/393 (15%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYVG+L V +L + F F + +V + TG S YG+V + PH A AI
Sbjct: 205 NLYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINR 264
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGV----------------ANLFVKNLIESIDNVRL 116
N + GK+L + + P + ++L+V+NL S+ L
Sbjct: 265 MNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSLSMTKEEL 324
Query: 117 QEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV--- 172
+ F FG II KV G +KG+GFV++ A AI +LNG V K++ V
Sbjct: 325 LQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKMEVRVS 384
Query: 173 ----------------GRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGK 216
R IK+ D NL++ N+ + + + L+E F FGK
Sbjct: 385 GVSPALSNSAVESHTDARLIKEID---------MANLYVCNIPTSIDTKKLIEIFLPFGK 435
Query: 217 IASLLIARDENGTSRG---FGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
I +A + GT G +GFV F + A A+ M+G+++ + L A +
Sbjct: 436 ITHARVAAHQ-GTYSGKGRYGFVKFADSQCAAEAITLMDGALVEGETLVVRVAGLSSSAS 494
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGIN 333
H E S +Y+ N+ + + F G I+ KV+ +N
Sbjct: 495 SPAVHGLPIPSPE----INKSRIYITNLPRSTNADMMVKLFVPFGQIS--KVV-----MN 543
Query: 334 KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
+ V ++ A KA+ GYM+ K L V
Sbjct: 544 LEYSLVYYADVASAVKAIKHMDGYMIGGKRLVV 576
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 97/182 (53%), Gaps = 4/182 (2%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE--NGTSRGFGFVNFDNPDDARRAL 248
TNL++ NL + V L+E F FG+I +A DE G S+G+GFV +D+P A A+
Sbjct: 204 TNLYVGNLPASVGSHKLIELFLPFGRIVRSKVA-DECFTGLSKGYGFVKYDDPHSATAAI 262
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
MNG ++ K+L A E + + S++YV+N+ +T E
Sbjct: 263 NRMNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSLSMTKE 322
Query: 309 ELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
EL HF G I AKV RD G+NKG+GFV +S+ EA+ A+ +G+++ K + V
Sbjct: 323 ELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKMEVR 382
Query: 368 IA 369
++
Sbjct: 383 VS 384
>gi|354502803|ref|XP_003513471.1| PREDICTED: nucleolin [Cricetulus griseus]
Length = 762
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 174/350 (49%), Gaps = 34/350 (9%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
+TTP +L++G+L+P+ + EL A SE + + V D TG + +GYV+F S D
Sbjct: 353 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLE 411
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVA-NLFVKNLIESIDNVRLQEMFQNFGNI 126
+A+E+ ++ G +++ + D++K A L KNL +I L+E+F++ I
Sbjct: 412 KALEL-TGLKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEI 469
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDRVL 183
S+DGKSKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 470 ----RLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTG 525
Query: 184 PSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + + L + NL TEE L E F K + + +++ G S+G+ F+ F +
Sbjct: 526 KNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEFASF 582
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS-NVYVKN 300
+DA+ AL + N I + +R + + R + + S ++VK
Sbjct: 583 EDAKEALNSCNKMEIEGRT---------------IRLELQGPRGSPNARSQPSKTLFVKG 627
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+ +D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 628 LSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 675
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 131/259 (50%), Gaps = 24/259 (9%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + +R+ S G+S Y+ F S DA + +E
Sbjct: 444 TLLAKNLSFNITEDELKEVFED---ALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEE 498
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVAN---------LFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ ++ N L + NL S LQE+F+
Sbjct: 499 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 558
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV ++ GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 559 TFI---KVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTI---RLELQGPRGS 612
Query: 184 PSPAAKYT-NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +
Sbjct: 613 PNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEE 670
Query: 243 DARRALEAM-NGSVIGSKV 260
DA+ A EAM +G + G+KV
Sbjct: 671 DAKAAKEAMEDGEIDGNKV 689
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 92 PDARKSGVA--------NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHG 143
P+A+K V NLF+ NL + L+ V G ++ G
Sbjct: 341 PEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFG 400
Query: 144 FVQFETEESANAAIENLNGTTVGDKRIYV----GRFIKKSDRVLPSPAAKYTNLFMKNLD 199
+V FE+ E A+E L G V I + GR KK AA+ L KNL
Sbjct: 401 YVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVR------AAR--TLLAKNLS 451
Query: 200 SDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK 259
++TE+ L E F +I L+++D G S+G ++ F + DA + LE G+ I +
Sbjct: 452 FNITEDELKEVFEDALEI--RLVSQD--GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 507
Query: 260 VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT 319
+ +K +R+ E K + + + N+ T+E L+ F +
Sbjct: 508 SVSLYYTGEKGQRQ-------ERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 560
Query: 320 ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
I KV ++++G +KG+ F+ F+S E+A +A+N+
Sbjct: 561 I---KVPQNQQGKSKGYAFIEFASFEDAKEALNS 591
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 21/185 (11%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NLF+ NL+ + + L S+ L + GT+R FG+V+F++ +D +ALE
Sbjct: 358 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELT 417
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
V G+++ ++ + + + +K R + + KN+ ++T++ELK
Sbjct: 418 GLKVFGNEI-------------KLEKPKGRDSKKVRAAR----TLLAKNLSFNITEDELK 460
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F I + + G +KG ++ F S +A K + G + + + +
Sbjct: 461 EVFEDALEIR----LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 516
Query: 372 KEDRQ 376
K RQ
Sbjct: 517 KGQRQ 521
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 79/105 (75%)
Query: 281 EEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVC 340
E+ E K++G+N+Y+KN+D + D++LK FSQ G+ITS KVMRD GI++G GFV
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 341 FSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
F++PEEAS+A+ +G M+ KPLYVA+AQRKE R+A LQ Q++Q
Sbjct: 61 FTTPEEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQ 105
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 59/94 (62%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
NL+MKNLD + ++ L + FS+FG I S + RD NG SRG GFV F P++A RA+
Sbjct: 14 ANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKR 284
MNG ++ K LY A AQ+K R L+ QF + R
Sbjct: 74 MNGKMVVGKPLYVALAQRKEVRRARLQAQFSQIR 107
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 52/82 (63%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
ANL++KNL SID+ +L+++F FG+I SCKV +G S+G GFV F T E A+ AI
Sbjct: 14 ANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 160 LNGTTVGDKRIYVGRFIKKSDR 181
+NG V K +YV +K R
Sbjct: 74 MNGKMVVGKPLYVALAQRKEVR 95
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
A+LY+ +L + D +L FS+F S+ S +V +D G S G+V F +P +A RAI
Sbjct: 14 ANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRD-PNGISRGSGFVAFTTPEEASRAIL 72
Query: 72 VKNHTQLHGKMLRISWSCR 90
N + GK L ++ + R
Sbjct: 73 EMNGKMVVGKPLYVALAQR 91
>gi|224060641|ref|XP_002193452.1| PREDICTED: nucleolin [Taeniopygia guttata]
Length = 692
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 171/345 (49%), Gaps = 27/345 (7%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+++VG+L EL EF ++ V D + +GYV+F S D +A+++
Sbjct: 280 TMFVGNLVSAKDFEELKTGLREFFGKKNIEVL-DVRISATRRFGYVDFSSAEDLDKALQM 338
Query: 73 KNHTQLHGKMLRI----SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
N +L G +++ S + ++ LF+KNL I ++E+F+N +
Sbjct: 339 -NGKKLMGVEVKLEKAKSKETMKENKKERDARTLFLKNLPYRITEDDIREVFEN---ALE 394
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA 188
++ ++DG S+G +V+F+TE A+ A+E GT + + + + +KS + +
Sbjct: 395 VRIVMNKDGNSRGMAYVEFKTEAEADKALEEKQGTEIEGRAVVIDFTGEKSQQ--ENQKG 452
Query: 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRAL 248
+ T L + NL TEE L E F K +S+ + ++ G +G+ FV+F +DA+ AL
Sbjct: 453 ESTTLIVNNLSYAATEETLQEVFKK---ASSIRVPQNNQGRPKGYAFVDFATAEDAKEAL 509
Query: 249 EAMNGSVIGSKVL---YAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
++N + I + + +++ + +K + + ++V+ + +D
Sbjct: 510 NSLNNTEIEGRTIRLEFSSPSWQKGNTNA--------RGGGGGFGQQSKTLFVRGLSEDT 561
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
T+E L+ F G+I++ V + G +KGFGFV FSSPE+A A
Sbjct: 562 TEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAA 604
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 134/267 (50%), Gaps = 37/267 (13%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L++ +L +T+ ++ + F ++ VR+ + G S YV F + +A +A+E
Sbjct: 370 TLFLKNLPYRITEDDIREVF---ENALEVRIVMNKD-GNSRGMAYVEFKTEAEADKALEE 425
Query: 73 KNHTQLHGKMLRISWSCRDP--DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
K T++ G+ + I ++ + +K L V NL + LQE+F+ +I +
Sbjct: 426 KQGTEIEGRAVVIDFTGEKSQQENQKGESTTLIVNNLSYAATEETLQEVFKKASSI---R 482
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY 190
V + G+ KG+ FV F T E A A+ +LN T + GR I+ SP+ +
Sbjct: 483 VPQNNQGRPKGYAFVDFATAEDAKEALNSLNNTEIE------GRTIRLE---FSSPSWQK 533
Query: 191 TN----------------LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234
N LF++ L D TEE L E F G I++ ++ + G+S+GFG
Sbjct: 534 GNTNARGGGGGFGQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFG 591
Query: 235 FVNFDNPDDARRALEAM-NGSVIGSKV 260
FV+F +P+DA+ A EAM +G + G+KV
Sbjct: 592 FVDFSSPEDAKAAKEAMEDGEIDGNKV 618
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 117/259 (45%), Gaps = 21/259 (8%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+FV NL+ + D L+ + F + +V ++ G+V F + E + A++ +N
Sbjct: 281 MFVGNLVSAKDFEELKTGLREFFGKKNIEVLDVRISATRRFGYVDFSSAEDLDKALQ-MN 339
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
G + + + + K LF+KNL +TE+ + E F +
Sbjct: 340 GKKLMGVEVKLEKAKSKETMKENKKERDARTLFLKNLPYRITEDDIREVFEN---ALEVR 396
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE 281
I +++G SRG +V F +A +ALE G+ I + + +K+++E
Sbjct: 397 IVMNKDGNSRGMAYVEFKTEAEADKALEEKQGTEIEGRAVVIDFTGEKSQQEN------- 449
Query: 282 EKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCF 341
K + + + V N+ T+E L+ F + +I +V ++ +G KG+ FV F
Sbjct: 450 -------QKGESTTLIVNNLSYAATEETLQEVFKKASSI---RVPQNNQGRPKGYAFVDF 499
Query: 342 SSPEEASKAVNTFHGYMLH 360
++ E+A +A+N+ + +
Sbjct: 500 ATAEDAKEALNSLNNTEIE 518
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L+V L D T+ L ++F + S R+ D TG S +G+V+F SP DA A E
Sbjct: 551 TLFVRGLSEDTTEETLRESF---EGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEA 607
Query: 73 KNHTQLHGKMLRISWS 88
++ G + + ++
Sbjct: 608 MEDGEIDGNKVTLDFA 623
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 128/260 (49%), Gaps = 18/260 (6%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+LYVG+LHP V + L D FS +++ VR+ KD TG S +V F A A++
Sbjct: 6 ALYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKT 65
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGV-ANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L+ K +RI W+ + + +++FV NL + + L + FQ+ G +V
Sbjct: 66 INGRILYNKEVRIQWAFQKEKTENTASHSHIFVGNLSGDVADPVLLQAFQHLGECSDARV 125
Query: 132 ATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL------- 183
G+SKG GFV F T+E+A A+ ++G VG +I G K++ V
Sbjct: 126 MWDHSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAHHKTEAVTGLDIDTV 185
Query: 184 --PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
PA TN+++ NL ++V EE L F +G+I L G+GFV + +
Sbjct: 186 DRADPAN--TNVYVGNLPTEVMEEDLRAAFGAYGEITGLKPCH-----KGGYGFVTYRDH 238
Query: 242 DDARRALEAMNGSVIGSKVL 261
A +A+ MNG + K++
Sbjct: 239 SAAVQAIVGMNGKELKGKMV 258
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 126/263 (47%), Gaps = 15/263 (5%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENL 160
L+V NL ++ LQ++F G + ++ G S G FV+FE ++A A++ +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTI 66
Query: 161 NGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASL 220
NG + +K + + +K A ++++F+ NL DV + L++ F G+ +
Sbjct: 67 NGRILYNKEVRIQWAFQKEK---TENTASHSHIFVGNLSGDVADPVLLQAFQHLGECSDA 123
Query: 221 LIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQ 279
+ D + G S+GFGFV+F + A +AL M+G+ +G + A K E L
Sbjct: 124 RVMWDHSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAHHKTEAVTGLDID 183
Query: 280 FEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFV 339
++ +NVYV N+ +V +E+L+A F G IT K KG G+GFV
Sbjct: 184 TVDRADP-----ANTNVYVGNLPTEVMEEDLRAAFGAYGEITGLKPCH--KG---GYGFV 233
Query: 340 CFSSPEEASKAVNTFHGYMLHRK 362
+ A +A+ +G L K
Sbjct: 234 TYRDHSAAVQAIVGMNGKELKGK 256
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAM 251
L++ NL V E L + FS G ++ + I +D G S G FV F++ A AL+ +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTI 66
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG ++LY +E ++ F++++ E + S+++V N+ DV D L
Sbjct: 67 NG-----RILY--------NKEVRIQWAFQKEKTENTASH--SHIFVGNLSGDVADPVLL 111
Query: 312 AHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
F G + A+VM D G +KGFGFV F + E A KA+ G + + + A
Sbjct: 112 QAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAH 171
Query: 371 RKEDRQAHLQL 381
K + L +
Sbjct: 172 HKTEAVTGLDI 182
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
++YVG+L +V + +L AF + + ++ C YG+V + A++AI
Sbjct: 194 NVYVGNLPTEVMEEDLRAAFGAYGEITGLKPCHKGG------YGFVTYRDHSAAVQAIVG 247
Query: 73 KNHTQLHGKMLRISW 87
N +L GKM++ SW
Sbjct: 248 MNGKELKGKMVKCSW 262
>gi|403355351|gb|EJY77251.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 712
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 167/344 (48%), Gaps = 47/344 (13%)
Query: 55 YGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI---------SWSCRDPDARKSGV-----A 100
+ YV F S + +++ N+ ++ K R+ S +D A + +
Sbjct: 15 FAYVCFKSQEHVDKCLQILNYPRIKDKCCRVLRYSIKLAKSQQFQDHHASSAAKFFPTDS 74
Query: 101 NLFVKNLIE-SIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159
LFVK + + L F+ FG ++S KV+ + +SKG+G+VQF + +A A+E
Sbjct: 75 QLFVKGFKPLNWTHEDLTMNFKQFGEVVSAKVSIDANHQSKGYGYVQFSQKSNALKAMEM 134
Query: 160 LNGTTVGDK-----RIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS-DVTEEHLVEKFSK 213
+NG T G++ ++Y +K+ + + + NL++KN + D T++ L
Sbjct: 135 MNGKTFGNEIVLSVKLYNSSLVKEKSKKVQN------NLYVKNFPTLDFTDQEL-----H 183
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
+G + + I +D G ++GFGFV F + +DA++AL+ ++ + +Y AQ K ER
Sbjct: 184 YGPLINAQIMKDSQGNTKGFGFVCFQSAEDAQKALQDISSTT----QIYVTEAQSKEERM 239
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDD-VTDEELKAHFSQCGTITSAKVMRDEKGI 332
L+ + +K + + N+YVK D + +TD+ LK HF G + +AK+ +
Sbjct: 240 SELQRKNLSFKKSTMYQ----NLYVKGFDKNIITDDLLKIHFEAYGEVKNAKITSN---- 291
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQ 376
G +VCF E A KA + + + L V + KE RQ
Sbjct: 292 --GTAYVCFFDRESARKAKDASTTTPFYGRFLRVEYFEPKELRQ 333
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 131/250 (52%), Gaps = 34/250 (13%)
Query: 143 GFVQFETEESANAAIENLNGTTVGDKRIYVGRF---IKKSDRVL---PSPAAKY----TN 192
+V F+++E + ++ LN + DK V R+ + KS + S AAK+ +
Sbjct: 16 AYVCFKSQEHVDKCLQILNYPRIKDKCCRVLRYSIKLAKSQQFQDHHASSAAKFFPTDSQ 75
Query: 193 LFMKNLDS-DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
LF+K + T E L F +FG++ S ++ D N S+G+G+V F +A +A+E M
Sbjct: 76 LFVKGFKPLNWTHEDLTMNFKQFGEVVSAKVSIDANHQSKGYGYVQFSQKSNALKAMEMM 135
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD-DVTDEEL 310
NG G++++ + + + +++ +++ +N+YVKN D TD+EL
Sbjct: 136 NGKTFGNEIVLSVK---------LYNSSLVKEKSKKV----QNNLYVKNFPTLDFTDQEL 182
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
H+ G + +A++M+D +G KGFGFVCF S E+A KA+ +YV AQ
Sbjct: 183 --HY---GPLINAQIMKDSQGNTKGFGFVCFQSAEDAQKALQDISS----TTQIYVTEAQ 233
Query: 371 RKEDRQAHLQ 380
KE+R + LQ
Sbjct: 234 SKEERMSELQ 243
>gi|159164023|pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 72/92 (78%), Gaps = 1/92 (1%)
Query: 286 ERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPE 345
+RI +Y+ N+YVKN+DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPE
Sbjct: 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPE 66
Query: 346 EASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
EA+KAV +G ++ KPLYVA+AQRKE+RQ+
Sbjct: 67 EATKAVTEMNGRIVATKPLYVALAQRKEERQS 98
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL++KNLD + +E L + FS FG I S + E G S+GFGFV F +P++A +A+ M
Sbjct: 17 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEM 75
Query: 252 NGSVIGSKVLYAARAQKKAERE 273
NG ++ +K LY A AQ+K ER+
Sbjct: 76 NGRIVATKPLYVALAQRKEERQ 97
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIE 158
V NL+VKNL + ID+ RL++ F FG I S KV E G+SKG GFV F + E A A+
Sbjct: 15 VVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVT 73
Query: 159 NLNGTTVGDKRIYVGRFIKKSDR 181
+NG V K +YV +K +R
Sbjct: 74 EMNGRIVATKPLYVALAQRKEER 96
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYV +L + D L AFS F ++ S +V + GRS +G+V F SP +A +A+
Sbjct: 18 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 75
Query: 74 NHTQLHGKMLRISWSCRDPDARKSG 98
N + K L ++ + R + R+SG
Sbjct: 76 NGRIVATKPLYVALAQRKEE-RQSG 99
>gi|297807995|ref|XP_002871881.1| hypothetical protein ARALYDRAFT_488820 [Arabidopsis lyrata subsp.
lyrata]
gi|297317718|gb|EFH48140.1| hypothetical protein ARALYDRAFT_488820 [Arabidopsis lyrata subsp.
lyrata]
Length = 426
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 140/287 (48%), Gaps = 45/287 (15%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L++GDL V + L FS+ L SV+V ++ TG+ YG++ F+S A R ++
Sbjct: 24 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 83
Query: 73 KNHTQLHGKML--RISW----SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ-NFGN 125
N TQ+ G L R++W S + DA ++FV +L + + LQE F+ ++ +
Sbjct: 84 YNGTQMPGTELTFRLNWASFGSGQKVDAGPD--HSIFVGDLAPDVTDYLLQETFRVHYSS 141
Query: 126 IISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNG----------------TTVGDK 168
+ KV T G+SKG+GFV+F E N A+ +NG VG +
Sbjct: 142 VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQ 201
Query: 169 RIYVGR-------------FIKKSDRVLPSPA-AKYTNLFMKNLDSDVTEEHLVEKFSKF 214
+ YV + +I + + LP + T + + NLD +VTEE L + FS+
Sbjct: 202 QQYVTKGPVPSAVAAPVQAYIAQPGQGLPPESDVTCTTISIANLDPNVTEEELKKAFSQL 261
Query: 215 GKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
G+I + I ++G+G+V F A A++ M G VIG + +
Sbjct: 262 GEIIYVKIP-----ATKGYGYVQFKTRPSAEEAVQKMQGQVIGQQAV 303
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 34/297 (11%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
V L++ +L +D L F G ++S KV ++ G+ +G+GF++F + +A +
Sbjct: 22 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 81
Query: 158 ENLNGTTVGDK----RIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS- 212
+ NGT + R+ F +V P ++F+ +L DVT+ L E F
Sbjct: 82 QTYNGTQMPGTELTFRLNWASF-GSGQKVDAGPDH---SIFVGDLAPDVTDYLLQETFRV 137
Query: 213 KFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK-- 269
+ + + D G S+G+GFV F + RA+ MNG ++ + + A K
Sbjct: 138 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 197
Query: 270 --AEREQILRHQFEEKRKERILKYKG--------------SNVYVKNIDDDVTDEELKAH 313
+++ + + + Y + + + N+D +VT+EELK
Sbjct: 198 VGVQQQYVTKGPVPSAVAAPVQAYIAQPGQGLPPESDVTCTTISIANLDPNVTEEELKKA 257
Query: 314 FSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FSQ G I K+ KG+G+V F + A +AV G ++ ++ + ++ ++
Sbjct: 258 FSQLGEIIYVKIP-----ATKGYGYVQFKTRPSAEEAVQKMQGQVIGQQAVRISWSK 309
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 25/199 (12%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
L++ +L V E +L FS+ G++ S+ + R++ G G+GF+ F + A R L+
Sbjct: 24 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 83
Query: 251 MNGSVI-GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD-- 307
NG+ + G+++ + ++ F +K + +++V ++ DVTD
Sbjct: 84 YNGTQMPGTELTF-----------RLNWASFGSGQK--VDAGPDHSIFVGDLAPDVTDYL 130
Query: 308 --EELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
E + H+S ++ AKV+ D G +KG+GFV F+ E ++A+ +G +P+
Sbjct: 131 LQETFRVHYS---SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPM 187
Query: 365 YVAIAQRKEDRQAHLQLQY 383
++ A K++ +Q QY
Sbjct: 188 RISAATPKKN--VGVQQQY 204
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P + T ++ + +L P+VT+ EL AFS+ + V++ +T G YGYV F +
Sbjct: 231 PESDVTCTTISIANLDPNVTEEELKKAFSQLGEIIYVKI--PATKG----YGYVQFKTRP 284
Query: 65 DAIRAIEVKNHTQLHGKMLRISWS 88
A A++ + + +RISWS
Sbjct: 285 SAEEAVQKMQGQVIGQQAVRISWS 308
>gi|145334517|ref|NP_001078604.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332005307|gb|AED92690.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 421
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 136/281 (48%), Gaps = 39/281 (13%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L++GDL V + L FS+ L SV+V ++ TG+ YG++ F+S A R ++
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 73 KNHTQLHGKML--RISW----SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ-NFGN 125
N TQ+ G L R++W S + DA ++FV +L + + LQE F+ ++ +
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSGQKVDAGPD--HSIFVGDLAPDVTDYLLQETFRVHYSS 142
Query: 126 IISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNG----------------TTVGDK 168
+ KV T G+SKG+GFV+F E N A+ +NG VG +
Sbjct: 143 VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQ 202
Query: 169 RIYVGRFIKKSDRVLPSPA--------AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASL 220
+ YV + S P A T + + NLD +VTEE L + FS+ G++ +
Sbjct: 203 QQYVTKVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYV 262
Query: 221 LIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
I ++G+G+V F A A++ M G VIG + +
Sbjct: 263 KIP-----ATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAV 298
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 132/291 (45%), Gaps = 28/291 (9%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
V L++ +L +D L F G ++S KV ++ G+ +G+GF++F + +A +
Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
Query: 158 ENLNGTTVGDK----RIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS- 212
+ NGT + R+ F +V P ++F+ +L DVT+ L E F
Sbjct: 83 QTYNGTQMPGTELTFRLNWASF-GSGQKVDAGPDH---SIFVGDLAPDVTDYLLQETFRV 138
Query: 213 KFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK-- 269
+ + + D G S+G+GFV F + RA+ MNG ++ + + A K
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Query: 270 --AEREQILRHQFEEKRKERILKYKG--------SNVYVKNIDDDVTDEELKAHFSQCGT 319
+++ + + + Y + + V N+D +VT+EELK FSQ G
Sbjct: 199 VGVQQQYVTKVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGE 258
Query: 320 ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ K+ KG+G+V F + A +AV G ++ ++ + ++ ++
Sbjct: 259 VIYVKIP-----ATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSK 304
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 25/199 (12%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
L++ +L V E +L FS+ G++ S+ + R++ G G+GF+ F + A R L+
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 251 MNGSVI-GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD-- 307
NG+ + G+++ + ++ F +K + +++V ++ DVTD
Sbjct: 85 YNGTQMPGTELTF-----------RLNWASFGSGQK--VDAGPDHSIFVGDLAPDVTDYL 131
Query: 308 --EELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
E + H+S ++ AKV+ D G +KG+GFV F+ E ++A+ +G +P+
Sbjct: 132 LQETFRVHYS---SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPM 188
Query: 365 YVAIAQRKEDRQAHLQLQY 383
++ A K++ +Q QY
Sbjct: 189 RISAATPKKN--VGVQQQY 205
>gi|403164939|ref|XP_003324991.2| hypothetical protein PGTG_06528 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165464|gb|EFP80572.2| hypothetical protein PGTG_06528 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 449
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 123/267 (46%), Gaps = 10/267 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSL--ASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
S++VGDL +T ++ FS+ + S+R + + Y YV + S DA AI
Sbjct: 174 SVFVGDLPGSITHEQIVKVFSQVSPILKISIRYPRSQAIKKLRAYAYVTYHSAEDASTAI 233
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N T GK R+ D D + + AN++V L S+ V + F FG I+S K
Sbjct: 234 REFNQTVFEGKPCRVVRVQHD-DLKSNKEANIYVGGLPPSLTGVAFHDTFSEFGEILSSK 292
Query: 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS---DRVLPSPA 187
+ + S GF+Q+ T E A AI+ NG T+ K R I S + P
Sbjct: 293 LVVNPKNVSNPFGFIQYATAEEAEIAIQKTNGATLDMKD--STRPISTSLFEGQAKPPRQ 350
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
+ N++ KN+ D+T + +FG S + +D +G G GF NF N +DA +
Sbjct: 351 PPFHNVYFKNIPKDITRRCFDQFCEEFGPTTSTFLKKDADGKPMGIGFANFSNTNDAVKI 410
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQ 274
+E + L+AARA + ER +
Sbjct: 411 VEYIRQ--YAPMGLHAARAYTRGERNR 435
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 19/260 (7%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNI--ISCKVATSEDGKS-KGHGFVQFETEESANAAI 157
++FV +L SI + ++ ++F I IS + S+ K + + +V + + E A+ AI
Sbjct: 174 SVFVGDLPGSITHEQIVKVFSQVSPILKISIRYPRSQAIKKLRAYAYVTYHSAEDASTAI 233
Query: 158 ENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
N T K V R ++ D + K N+++ L +T + FS+FG+I
Sbjct: 234 REFNQTVFEGKPCRVVR-VQHDDLK----SNKEANIYVGGLPPSLTGVAFHDTFSEFGEI 288
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277
S + + S FGF+ + ++A A++ NG+ + K + +
Sbjct: 289 LSSKLVVNPKNVSNPFGFIQYATAEEAEIAIQKTNGATLDMK------DSTRPISTSLFE 342
Query: 278 HQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFG 337
Q + R+ NVY KNI D+T + G TS + +D G G G
Sbjct: 343 GQAKPPRQPPF-----HNVYFKNIPKDITRRCFDQFCEEFGPTTSTFLKKDADGKPMGIG 397
Query: 338 FVCFSSPEEASKAVNTFHGY 357
F FS+ +A K V Y
Sbjct: 398 FANFSNTNDAVKIVEYIRQY 417
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 20/174 (11%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS---RGFGFVNFDNPDDARRAL 248
++F+ +L +T E +V+ FS+ I + I + R + +V + + +DA A+
Sbjct: 174 SVFVGDLPGSITHEQIVKVFSQVSPILKISIRYPRSQAIKKLRAYAYVTYHSAEDASTAI 233
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
N +V K R Q H + KE +N+YV + +T
Sbjct: 234 REFNQTVFEGKPCRVVRVQ----------HDDLKSNKE-------ANIYVGGLPPSLTGV 276
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
FS+ G I S+K++ + K ++ FGF+ +++ EEA A+ +G L K
Sbjct: 277 AFHDTFSEFGEILSSKLVVNPKNVSNPFGFIQYATAEEAEIAIQKTNGATLDMK 330
>gi|167384116|ref|XP_001736817.1| polyadenylate-binding protein, cytoplasmic and nuclear [Entamoeba
dispar SAW760]
gi|165900659|gb|EDR26930.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba dispar SAW760]
Length = 425
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 134/269 (49%), Gaps = 24/269 (8%)
Query: 95 RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESAN 154
R NL+VK + +S+ +LQE+F+ +G+ +S K++++E +S G G+V++ T E
Sbjct: 3 RTQNETNLYVKYIKKSVTQQKLQEVFEKYGHTLSVKLSSNEKNESNGFGYVKYCTVEECQ 62
Query: 155 AAIENLN--GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
AA++ + +GD+ + +F K+ P TNL++ N+D VTEE ++ F
Sbjct: 63 AAVDARDEIAKEIGDEGFLIAKFCKQ-------PKNLKTNLYIGNIDKTVTEEQFLKYFE 115
Query: 213 KFGKIAS-------LLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265
FG I DE + GFVNF+N +DA++A+ A V+G +
Sbjct: 116 TFGPIKCGADGKKFYRFLYDEK-YEKNKGFVNFENTEDAQKAVTAPRHCVLGDSDILVTY 174
Query: 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
+ K ER+Q + E + KYK N +VK +T+EE++ CG I S K+
Sbjct: 175 YKTKKERKQEFKQHASEVKMNATGKYKEYNFHVKTDKAGITEEEIRNALQDCGGIYSIKI 234
Query: 326 MRDEKGINK---GFGFVCFSSPEEASKAV 351
K +N ++CF + + A + +
Sbjct: 235 ----KYVNSEPTDVVYICFDNGQSAHQFI 259
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 108/453 (23%), Positives = 188/453 (41%), Gaps = 84/453 (18%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TNL++K + VT++ L E F K+G S+ ++ +E S GFG+V + ++ + A++A
Sbjct: 8 TNLYVKYIKKSVTQQKLQEVFEKYGHTLSVKLSSNEKNESNGFGYVKYCTVEECQAAVDA 67
Query: 251 MN--GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
+ IG + A+ K+ + LK +N+Y+ NID VT+E
Sbjct: 68 RDEIAKEIGDEGFLIAKFCKQPKN----------------LK---TNLYIGNIDKTVTEE 108
Query: 309 ELKAHFSQCGTITSA-------KVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
+ +F G I + + DEK K GFV F + E+A KAV +L
Sbjct: 109 QFLKYFETFGPIKCGADGKKFYRFLYDEK-YEKNKGFVNFENTEDAQKAVTAPRHCVLGD 167
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQ----- 416
+ V + K++R+ ++ QH + ++ ++ Y T GI +
Sbjct: 168 SDILVTYYKTKKERKQ----EFKQHASEVKMNATGKYKE-YNFHVKTDKAGITEEEIRNA 222
Query: 417 --------------VPPRP-GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQ 461
V P ++Y + G A+ F+ Q+ NP +Q
Sbjct: 223 LQDCGGIYSIKIKYVNSEPTDVVY--ICFDNGQSAHQFIQKA----QILGWTANPFKTKQ 276
Query: 462 NRGR----MNGNMLPQVGAHYMQQSSQSAASSKDSSNQQ-KGGQSKYVPNGRIRELNKGS 516
R NG +P +++Q + S N+Q K G + + K S
Sbjct: 277 ERSSANNYYNGTGIPGFPVNFLQYFQLFPSVFNTSINRQPKPGNKQPRNVSASQNAKKKS 336
Query: 517 GVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPL---VEKHKPDLVAKITG 573
V + ++P + A E+ K LG++LY +E + +L +ITG
Sbjct: 337 KVD-------NNIKKQPKSIEK--APIVTEEMKNDLGDQLYDFILSIENYDEELTGRITG 387
Query: 574 MLLE-MDNSELLLLLESPESLAVKVEEAVQVLK 605
+LLE ++ SEL +L++ K+EE V+K
Sbjct: 388 VLLESIEYSELNNMLKN------KIEELKNVIK 414
>gi|432853218|ref|XP_004067598.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Oryzias latipes]
Length = 356
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 138/307 (44%), Gaps = 48/307 (15%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L V L +T EL FS + S ++ +D G S YG+VNF++P+DA RAI
Sbjct: 52 TNLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNFVNPNDAERAIS 111
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N +L K +++S++ D K ANL++ L ++ L++MF +FG II+ +V
Sbjct: 112 TLNGLRLQSKTIKVSFARPSSDTIKD--ANLYISGLPRTLGQQDLEDMFASFGRIINSRV 169
Query: 132 ATSE-DGKSKGHGFVQFETEESANAAIENLNGTTV------------------------- 165
+ G S+G F++F+ A A+++LNG T
Sbjct: 170 LVDQASGLSRGVAFIRFDKRSEAEDAVKHLNGHTPPGGSEPITVKFAVNPNQARNSQMMS 229
Query: 166 ----GDKRIYVGRFIKKSDRVLPSPAA---------------KYTNLFMKNLDSDVTEEH 206
G R + G ++ R SP + +F+ NL D E
Sbjct: 230 QMYHGQSRRFGGPVHHQTQRFRFSPMSTDHMGNGGGASGNASSGWCIFIYNLTQDADEGM 289
Query: 207 LVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265
L + F FG + ++ + RD N +GFGFV N ++A A+ ++NG +G KVL +
Sbjct: 290 LWQMFGPFGAVVNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIHSLNGYRMGDKVLQVSF 349
Query: 266 AQKKAER 272
K +
Sbjct: 350 KTSKGHK 356
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 141/317 (44%), Gaps = 45/317 (14%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
D DA+ NL V L +S+ L+ +F + G + S K+ + G S G+GFV F
Sbjct: 47 DDDAQ----TNLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNFVN 102
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A AI LNG + K I V SD + K NL++ L + ++ L +
Sbjct: 103 PNDAERAISTLNGLRLQSKTIKVSFARPSSDTI------KDANLYISGLPRTLGQQDLED 156
Query: 210 KFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVI--GSKVLYAARA 266
F+ FG+I + + D+ +G SRG F+ FD +A A++ +NG GS+ + A
Sbjct: 157 MFASFGRIINSRVLVDQASGLSRGVAFIRFDKRSEAEDAVKHLNGHTPPGGSEPITVKFA 216
Query: 267 --QKKAEREQILRHQFEEKRK-------ERILKYKGS---------------------NV 296
+A Q++ + + + + +++ S +
Sbjct: 217 VNPNQARNSQMMSQMYHGQSRRFGGPVHHQTQRFRFSPMSTDHMGNGGGASGNASSGWCI 276
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFH 355
++ N+ D + L F G + + KV+RD KGFGFV ++ EEA+ A+++ +
Sbjct: 277 FIYNLTQDADEGMLWQMFGPFGAVVNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIHSLN 336
Query: 356 GYMLHRKPLYVAIAQRK 372
GY + K L V+ K
Sbjct: 337 GYRMGDKVLQVSFKTSK 353
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 99/194 (51%), Gaps = 24/194 (12%)
Query: 166 GDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD 225
G K +Y F+ ++++ A+ TNL + L +T++ L FS G++ S + RD
Sbjct: 31 GGKELYNNGFV---EQMMEDDDAQ-TNLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRD 86
Query: 226 E-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKR 284
+ G S G+GFVNF NP+DA RA+ +NG + SK + + A+ ++
Sbjct: 87 KVAGHSLGYGFVNFVNPNDAERAISTLNGLRLQSKTIKVSFARPSSD------------- 133
Query: 285 KERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSS 343
K +N+Y+ + + ++L+ F+ G I +++V+ D+ G+++G F+ F
Sbjct: 134 -----TIKDANLYISGLPRTLGQQDLEDMFASFGRIINSRVLVDQASGLSRGVAFIRFDK 188
Query: 344 PEEASKAVNTFHGY 357
EA AV +G+
Sbjct: 189 RSEAEDAVKHLNGH 202
>gi|255089439|ref|XP_002506641.1| predicted protein [Micromonas sp. RCC299]
gi|226521914|gb|ACO67899.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 22/281 (7%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V N+ S L+ +F G I + T G+S+G+G V++ A AI+ L+
Sbjct: 9 LYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQGRSRGYGIVEYSNVNEAQVAIQTLD 68
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPS------------PAAKYTNLFMKNLDSDVTEEHLVE 209
G T+GD+ I V R K + PS PAA ++ NL + EE L+
Sbjct: 69 GHTLGDRNITV-REDKAPTKSAPSKSGGNRSTIGDTPAADGCRCYVGNLAWETNEESLIA 127
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM-NGSVIGSKVLYAARAQK 268
S+ G + +A+ G S+G+G V+F+ PD A A+ + N + G ++
Sbjct: 128 HCSQVGTVVQAEVAKQPGGRSKGWGLVDFETPDAANSAINTLHNSDLQGRSIIVRLERAG 187
Query: 269 KAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK-VMR 327
A + R G + V+N+ T E+L+ F Q GT+ A+ V
Sbjct: 188 GANKSG-------GPNAGRPEASSGLQIVVRNLPWSTTSEDLRQVFQQVGTVIKAEAVCH 240
Query: 328 DEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
+ G +KG+G V F + E+A A+ F+G L +P+ + +
Sbjct: 241 ADTGRSKGWGTVLFETREQAQAAIQGFNGVELEHRPMQIKL 281
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 10 TPAS----LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
TPA+ YVG+L + + L S+ ++ V K GRS +G V+F +P
Sbjct: 103 TPAADGCRCYVGNLAWETNEESLIAHCSQVGTVVQAEVAKQPG-GRSKGWGLVDFETPDA 161
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVAN-----------LFVKNLIESIDNV 114
A AI +++ L G+ + + R A KSG N + V+NL S +
Sbjct: 162 ANSAINTLHNSDLQGRSIIVRLE-RAGGANKSGGPNAGRPEASSGLQIVVRNLPWSTTSE 220
Query: 115 RLQEMFQNFGNIISCK-VATSEDGKSKGHGFVQFETEESANAAIENLNG 162
L+++FQ G +I + V ++ G+SKG G V FET E A AAI+ NG
Sbjct: 221 DLRQVFQQVGTVIKAEAVCHADTGRSKGWGTVLFETREQAQAAIQGFNG 269
>gi|128842|sp|P08199.2|NUCL_MESAU RecName: Full=Nucleolin; AltName: Full=Protein C23
Length = 714
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 174/350 (49%), Gaps = 34/350 (9%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
+TTP +L++G+L+P+ + EL A SE + + V D TG + +GYV+F S D
Sbjct: 304 STTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLE 362
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVA-NLFVKNLIESIDNVRLQEMFQNFGNI 126
+A+E+ ++ G +++ + D++K A L KNL +I L+E+F++ I
Sbjct: 363 KALEL-TGLKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEI 420
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDRVL 183
S+DGKSKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 421 RLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTG 476
Query: 184 PSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + + L + NL TEE L E F K + + +++ G S+G+ F+ F +
Sbjct: 477 KNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEFASF 533
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS-NVYVKN 300
+DA+ AL + N I + +R + + R + + S ++VK
Sbjct: 534 EDAKEALNSCNKMEIEGRT---------------IRLELQGPRGSPNARSQPSKTLFVKG 578
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+ +D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 579 LSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 626
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 131/259 (50%), Gaps = 24/259 (9%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + +R+ S G+S Y+ F S DA + +E
Sbjct: 395 TLLAKNLSFNITEDELKEVFED---ALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEE 449
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVAN---------LFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ ++ N L + NL S LQE+F+
Sbjct: 450 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 509
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV ++ GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 510 TFI---KVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTI---RLELQGPRGS 563
Query: 184 PSPAAKYT-NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +
Sbjct: 564 PNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEE 621
Query: 243 DARRALEAM-NGSVIGSKV 260
DA+ A EAM +G + G+KV
Sbjct: 622 DAKAAKEAMEDGEIDGNKV 640
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 122/274 (44%), Gaps = 35/274 (12%)
Query: 92 PDARKSGVA--------NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHG 143
P+A+K V NLF+ NL + L+ V G ++ G
Sbjct: 292 PEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTGTNRKFG 351
Query: 144 FVQFETEESANAAIENLNGTTVGDKRIYV----GRFIKKSDRVLPSPAAKYTNLFMKNLD 199
+V FE+ E A+E L G V I + GR KK AA+ L KNL
Sbjct: 352 YVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVR------AAR--TLLAKNLS 402
Query: 200 SDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK 259
++TE+ L E F +I L+++D G S+G ++ F + DA + LE G+ I +
Sbjct: 403 FNITEDELKEVFEDALEI--RLVSQD--GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 458
Query: 260 VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT 319
+ +K +R+ E K + + + N+ T+E L+ F +
Sbjct: 459 SVSLYYTGEKGQRQ-------ERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 511
Query: 320 ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
I KV ++++G +KG+ F+ F+S E+A +A+N+
Sbjct: 512 I---KVPQNQQGKSKGYAFIEFASFEDAKEALNS 542
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 21/185 (11%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NLF+ NL+ + + L S+ L + GT+R FG+V+F++ +D +ALE
Sbjct: 309 NLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELT 368
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
V G+++ ++ + + + +K R + + KN+ ++T++ELK
Sbjct: 369 GLKVFGNEI-------------KLEKPKGRDSKKVRAAR----TLLAKNLSFNITEDELK 411
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F I + + G +KG ++ F S +A K + G + + + +
Sbjct: 412 EVFEDALEIR----LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 467
Query: 372 KEDRQ 376
K RQ
Sbjct: 468 KGQRQ 472
>gi|366988141|ref|XP_003673837.1| hypothetical protein NCAS_0A08980 [Naumovozyma castellii CBS 4309]
gi|342299700|emb|CCC67456.1| hypothetical protein NCAS_0A08980 [Naumovozyma castellii CBS 4309]
Length = 605
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 139/300 (46%), Gaps = 54/300 (18%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
SL++ L DVT+ L+D FS+++SL S+++C DS + +S YGY+NF +A +A++
Sbjct: 92 TSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYLNFSDELEAKKAVD 151
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ-----EMFQNFGNI 126
N+T L G +++ S R+ RK+ N+F NL ++N L + F+ +G I
Sbjct: 152 DFNYTILFGNEIKMMPSLRNTIYRKNIGTNVFFANL--PLENKHLTTRAFYDTFKGYGEI 209
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG------------- 173
+SCK+ K K GFV F+ ++ A I + N +I G
Sbjct: 210 LSCKL-----DKRKNIGFVYFDNDKPAQMVINDFNNKIYFGNKIICGLHFDKEIRNFPNF 264
Query: 174 ------------------------RFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
+F K S+ +LP P A +F+KNL DV +E +++
Sbjct: 265 DKRKANIDNKIIIDDELEAANIGVQFKKNSELILPHPNA----IFVKNLPFDVPDEEILD 320
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FSK G + S+ + + + F+ + D RA N + K + +RA+ K
Sbjct: 321 HFSKLGPVKSVF-SSNVTKYKSSWAFITYKKQTDTIRATNHFNNTKFQGKTITVSRAKLK 379
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 136/315 (43%), Gaps = 49/315 (15%)
Query: 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK-SKGHGFVQFE 148
R+ +RK V +LF+ L + + L ++F + +++S K+ D K S +G++ F
Sbjct: 82 RNYRSRKRIVTSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYLNFS 141
Query: 149 TEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKY------TNLFMKNL---D 199
E A A+++ N T I G IK ++PS TN+F NL +
Sbjct: 142 DELEAKKAVDDFNYT------ILFGNEIK----MMPSLRNTIYRKNIGTNVFFANLPLEN 191
Query: 200 SDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSV-IGS 258
+T + F +G+I S + + +N GFV FDN A+ + N + G+
Sbjct: 192 KHLTTRAFYDTFKGYGEILSCKLDKRKN-----IGFVYFDNDKPAQMVINDFNNKIYFGN 246
Query: 259 KVLYAARAQKKA-------------EREQILRHQFE--------EKRKERILKYKGSNVY 297
K++ K+ + + I+ + E +K E IL + + ++
Sbjct: 247 KIICGLHFDKEIRNFPNFDKRKANIDNKIIIDDELEAANIGVQFKKNSELILPHPNA-IF 305
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGY 357
VKN+ DV DEE+ HFS+ G + S + + F+ + + +A N F+
Sbjct: 306 VKNLPFDVPDEEILDHFSKLGPVKSV-FSSNVTKYKSSWAFITYKKQTDTIRATNHFNNT 364
Query: 358 MLHRKPLYVAIAQRK 372
K + V+ A+ K
Sbjct: 365 KFQGKTITVSRAKLK 379
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 27/190 (14%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGT-SRGFGFVNFDNPDDARRALE 249
T+LF+ L DVTE L + FSK+ + SL I D + S +G++NF + +A++A++
Sbjct: 92 TSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYLNFSDELEAKKAVD 151
Query: 250 AMNGSVI-GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI---DDDV 305
N +++ G+++ + R+ I G+NV+ N+ + +
Sbjct: 152 DFNYTILFGNEIKMMPSLRNTIYRKNI-----------------GTNVFFANLPLENKHL 194
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
T F G I S K+ + K GFV F + + A +N F+ + +
Sbjct: 195 TTRAFYDTFKGYGEILSCKLDK-----RKNIGFVYFDNDKPAQMVINDFNNKIYFGNKII 249
Query: 366 VAIAQRKEDR 375
+ KE R
Sbjct: 250 CGLHFDKEIR 259
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 120/300 (40%), Gaps = 35/300 (11%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +++V +L DV D E+ D FS+ + SV + T + + ++ + D IRA
Sbjct: 301 PNAIFVKNLPFDVPDEEILDHFSKLGPVKSV--FSSNVTKYKSSWAFITYKKQTDTIRAT 358
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCK 130
N+T+ GK + +S R G +++ N+ + L+ + G I + K
Sbjct: 359 NHFNNTKFQGKTITVS---RAKLKNTEGNRTVYLNNVSVVCNQEFLRRLCLQEG-IKAQK 414
Query: 131 VATSEDGKS--KGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS--------- 179
+ D G+++ ++++A E LNG +G I+V K
Sbjct: 415 IYLKPDDHDSYSCSGYIKCNSKDNAKRVFEILNGKFIGGCYIHVSWDKIKDPLKDEQSDI 474
Query: 180 ---------DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSK--FGKIASLLIARDENG 228
+ LP+PA + F+ +S+VT E + +K S K +I
Sbjct: 475 TQNKHNILPNLFLPNPAIQKHGNFISYKESNVTTEFISDKPSNHYISKEIQQIINIVNGH 534
Query: 229 TSRGFGFVNFDNP--DDARRALEAMNGSV-----IGSKVLYAARAQKKAEREQILRHQFE 281
RG F+N P D++ R + +V + + L+ E IL+ Q E
Sbjct: 535 VKRGLEFLNNKVPCRDESIRCISEYIINVYWYGDLQNLSLFLQSINSNVRYEAILQQQIE 594
>gi|432853220|ref|XP_004067599.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Oryzias latipes]
Length = 335
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 138/307 (44%), Gaps = 48/307 (15%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+L V L +T EL FS + S ++ +D G S YG+VNF++P+DA RAI
Sbjct: 31 TNLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNFVNPNDAERAIS 90
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N +L K +++S++ D K ANL++ L ++ L++MF +FG II+ +V
Sbjct: 91 TLNGLRLQSKTIKVSFARPSSDTIKD--ANLYISGLPRTLGQQDLEDMFASFGRIINSRV 148
Query: 132 ATSE-DGKSKGHGFVQFETEESANAAIENLNGTTV------------------------- 165
+ G S+G F++F+ A A+++LNG T
Sbjct: 149 LVDQASGLSRGVAFIRFDKRSEAEDAVKHLNGHTPPGGSEPITVKFAVNPNQARNSQMMS 208
Query: 166 ----GDKRIYVGRFIKKSDRVLPSPAAK---------------YTNLFMKNLDSDVTEEH 206
G R + G ++ R SP + +F+ NL D E
Sbjct: 209 QMYHGQSRRFGGPVHHQTQRFRFSPMSTDHMGNGGGASGNASSGWCIFIYNLTQDADEGM 268
Query: 207 LVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265
L + F FG + ++ + RD N +GFGFV N ++A A+ ++NG +G KVL +
Sbjct: 269 LWQMFGPFGAVVNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIHSLNGYRMGDKVLQVSF 328
Query: 266 AQKKAER 272
K +
Sbjct: 329 KTSKGHK 335
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 141/317 (44%), Gaps = 45/317 (14%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
D DA+ NL V L +S+ L+ +F + G + S K+ + G S G+GFV F
Sbjct: 26 DDDAQ----TNLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNFVN 81
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A AI LNG + K I V SD + K NL++ L + ++ L +
Sbjct: 82 PNDAERAISTLNGLRLQSKTIKVSFARPSSDTI------KDANLYISGLPRTLGQQDLED 135
Query: 210 KFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVI--GSKVLYAARA 266
F+ FG+I + + D+ +G SRG F+ FD +A A++ +NG GS+ + A
Sbjct: 136 MFASFGRIINSRVLVDQASGLSRGVAFIRFDKRSEAEDAVKHLNGHTPPGGSEPITVKFA 195
Query: 267 --QKKAEREQILRHQFEEKRK-------ERILKYKGS---------------------NV 296
+A Q++ + + + + +++ S +
Sbjct: 196 VNPNQARNSQMMSQMYHGQSRRFGGPVHHQTQRFRFSPMSTDHMGNGGGASGNASSGWCI 255
Query: 297 YVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFH 355
++ N+ D + L F G + + KV+RD KGFGFV ++ EEA+ A+++ +
Sbjct: 256 FIYNLTQDADEGMLWQMFGPFGAVVNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIHSLN 315
Query: 356 GYMLHRKPLYVAIAQRK 372
GY + K L V+ K
Sbjct: 316 GYRMGDKVLQVSFKTSK 332
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 140/271 (51%), Gaps = 30/271 (11%)
Query: 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70
P +LYVG+L P V++ + F++ S+ +V D G + Y +V FL A +A+
Sbjct: 43 PRTLYVGNLDPSVSEDLIATLFNQIGSVTKTKVIFD---GANDPYAFVEFLDHSQASQAL 99
Query: 71 EVKNHTQLHGKMLRISWSCRDPDARKSGVA-----NLFVKNLIESIDNVRLQEMFQNFGN 125
+ N L + ++++W+ +P + S V ++FV +L +DN +L+E FQ FG+
Sbjct: 100 QTMNKRLLLDREMKVNWAV-EPGQQPSKVDTTRHFHVFVGDLSSEVDNQKLREAFQPFGD 158
Query: 126 IISCKVA-TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS----- 179
+ KV + KSKG+GFV + E A AIE +NG +G + I +K
Sbjct: 159 VSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEK 218
Query: 180 ---------DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS 230
D + + T++++ N+ ++++E+ + + F+ +G+I+ + I +
Sbjct: 219 PTHYNEKSFDEIYNQTSGDNTSVYVGNI-ANLSEDEIRQAFASYGRISEVRIFK-----M 272
Query: 231 RGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+G+ FV FDN D A +A+ MN +G +++
Sbjct: 273 QGYAFVKFDNKDAAAKAIVQMNNQEVGGQLV 303
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 131/253 (51%), Gaps = 11/253 (4%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
L+V NL S+ + +F G++ KV DG + + FV+F A+ A++ +N
Sbjct: 46 LYVGNLDPSVSEDLIATLFNQIGSVTKTKVIF--DGANDPYAFVEFLDHSQASQALQTMN 103
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
+ D+ + V ++ + ++ ++F+ +L S+V + L E F FG ++
Sbjct: 104 KRLLLDREMKVNWAVEPGQQPSKVDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAK 163
Query: 222 IARDENGT-SRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQF 280
+ RD N T S+G+GFV++ ++A RA+E MNG +G + + A +K ++ H
Sbjct: 164 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPTHYN 223
Query: 281 EEKRKERILKYKGSN--VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338
E+ E + G N VYV NI +++++E++ F+ G I+ ++ + +G+ F
Sbjct: 224 EKSFDEIYNQTSGDNTSVYVGNI-ANLSEDEIRQAFASYGRISEVRIFK-----MQGYAF 277
Query: 339 VCFSSPEEASKAV 351
V F + + A+KA+
Sbjct: 278 VKFDNKDAAAKAI 290
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 21/184 (11%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
L++ NLD V+E+ + F++ G + + D G + + FV F + A +AL+ MN
Sbjct: 46 LYVGNLDPSVSEDLIATLFNQIGSVTKTKVIFD--GANDPYAFVEFLDHSQASQALQTMN 103
Query: 253 GSVIGS---KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
++ KV +A ++ + RH +V+V ++ +V +++
Sbjct: 104 KRLLLDREMKVNWAVEPGQQPSKVDTTRH---------------FHVFVGDLSSEVDNQK 148
Query: 310 LKAHFSQCGTITSAKVMRDEKGI-NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ F G ++ AKV+RD +KG+GFV + EEA +A+ +G L R+ +
Sbjct: 149 LREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 208
Query: 369 AQRK 372
A RK
Sbjct: 209 ATRK 212
>gi|123449065|ref|XP_001313255.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121895132|gb|EAY00326.1| hypothetical protein TVAG_307720 [Trichomonas vaginalis G3]
Length = 274
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 137/268 (51%), Gaps = 19/268 (7%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
++V +L P+ TD L F + ++ +V K G + ++ F + AIRA+
Sbjct: 9 IHVSNLPPNATDDFLRSFFQDCGNVLNVS-SKHRANGN---FAFIQFDNKESAIRAVANY 64
Query: 74 NHTQLHGKMLRISW-SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+T+L+G+ + I++ S SG+ N+ +K L E+I+ +L E+F NFG +ISCKV
Sbjct: 65 NYTKLNGEPIIITYASIEYMRIIHSGLGNICIKGLDENIEASQLHELFSNFGEVISCKVP 124
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK--- 189
+ GK++G ++QF+ A+ A + L T+ K I + ++KK + P +
Sbjct: 125 M-QYGKNRGFAYIQFKNPMDADRARQELADATINGKPISIEAYVKKDNPNKPQYVNRKSG 183
Query: 190 ----YTNLFMKNL-DSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+TN+F++NL DS + LV F FG + S I D+ GF N + D A
Sbjct: 184 MNDVFTNIFIRNLPDSVRSLADLVTLFVDFGPVISARIILDKKA-----GFCNMADHDSA 238
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAER 272
RAL +NG ++ L RA K ER
Sbjct: 239 VRALNGLNGKILYGNTLITCRALTKEER 266
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 137/280 (48%), Gaps = 18/280 (6%)
Query: 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161
+ V NL + + L+ FQ+ GN+++ +S+ + F+QF+ +ESA A+ N N
Sbjct: 9 IHVSNLPPNATDDFLRSFFQDCGNVLN---VSSKHRANGNFAFIQFDNKESAIRAVANYN 65
Query: 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLL 221
T + + I + + R++ S N+ +K LD ++ L E FS FG++ S
Sbjct: 66 YTKLNGEPIIITYASIEYMRIIHSGLG---NICIKGLDENIEASQLHELFSNFGEVISCK 122
Query: 222 IARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE 281
+ + G +RGF ++ F NP DA RA + + + I K + + +++ + Q+
Sbjct: 123 VPM-QYGKNRGFAYIQFKNPMDADRARQELADATINGKPI---SIEAYVKKDNPNKPQYV 178
Query: 282 EKRKERILKYKGSNVYVKNIDDDVTD-EELKAHFSQCGTITSAKVMRDEKGINKGFGFVC 340
++ + +N++++N+ D V +L F G + SA+++ D+K GF
Sbjct: 179 NRKSG--MNDVFTNIFIRNLPDSVRSLADLVTLFVDFGPVISARIILDKKA-----GFCN 231
Query: 341 FSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
+ + A +A+N +G +L+ L A KE+R A Q
Sbjct: 232 MADHDSAVRALNGLNGKILYGNTLITCRALTKEERLAFHQ 271
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 89/211 (42%), Gaps = 22/211 (10%)
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+ + NL + T++ L F G + ++ NG F F+ FDN + A RA+ N
Sbjct: 9 IHVSNLPPNATDDFLRSFFQDCGNVLNVSSKHRANGN---FAFIQFDNKESAIRAVANYN 65
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
+ + + + A + RI+ N+ +K +D+++ +L
Sbjct: 66 YTKLNGEPIIITYASIE---------------YMRIIHSGLGNICIKGLDENIEASQLHE 110
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS G + S KV + G N+GF ++ F +P +A +A ++ KP+ + +K
Sbjct: 111 LFSNFGEVISCKVPM-QYGKNRGFAYIQFKNPMDADRARQELADATINGKPISIEAYVKK 169
Query: 373 EDRQAHLQLQYAQHMAGIEGSSANVIPSGYP 403
++ + QY +G+ N+ P
Sbjct: 170 DNPN---KPQYVNRKSGMNDVFTNIFIRNLP 197
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 288 ILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEA 347
+L S ++V N+ + TD+ L++ F CG + + G F F+ F + E A
Sbjct: 1 MLSANDSLIHVSNLPPNATDDFLRSFFQDCGNVLNVSSKHRANG---NFAFIQFDNKESA 57
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYY 407
+AV ++ L+ +P+ + A + R H L I+G N+ S L+
Sbjct: 58 IRAVANYNYTKLNGEPIIITYASIEYMRIIHSGLG----NICIKGLDENIEASQLHELFS 113
Query: 408 TTPPGIVSQVPPRPG 422
I +VP + G
Sbjct: 114 NFGEVISCKVPMQYG 128
>gi|224104133|ref|XP_002313332.1| predicted protein [Populus trichocarpa]
gi|222849740|gb|EEE87287.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 139/298 (46%), Gaps = 40/298 (13%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P T +L++GDL + L F+ + S+++ ++ TG+ YG+V F+S
Sbjct: 13 PATLEEVRTLWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQPEGYGFVEFVSHA 72
Query: 65 DAIRAIEVKNHTQLHG--KMLRISWSC-----RDPDARKSGVANLFVKNLIESIDNVRLQ 117
A R ++ N TQ+ G + R++W+ R PDA ++FV +L + + LQ
Sbjct: 73 AAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE--HSIFVGDLAPDVTDYLLQ 130
Query: 118 EMFQ-NFGNIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRF 175
E F+ ++ ++ KV T + G+SKG+GFV+F E N A+ +NG + + +
Sbjct: 131 ETFRVHYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMTEMNGVFCSTRPMRISMA 190
Query: 176 IKKSDRVL-----------PSPA-------------AKYTNLFMKNLDSDVTEEHLVEKF 211
K P+PA T +F+ NLD + TEE L + F
Sbjct: 191 TPKKTTSFQQQYAVPKAFYPAPAYTAPVQVVSADGDVTNTTIFVGNLDPNATEEDLRQTF 250
Query: 212 SKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
+ G+IAS+ I RG GFV F A A++ M G VIG + + + +K+
Sbjct: 251 LQLGEIASVKIP-----AGRGCGFVQFATRTSAEEAIQRMQGHVIGQQPVRISWGKKQ 303
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 141/293 (48%), Gaps = 25/293 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
V L++ +L D L F + G ++S K+ ++ G+ +G+GFV+F + +A +
Sbjct: 19 VRTLWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQPEGYGFVEFVSHAAAERIL 78
Query: 158 ENLNGTTV-GDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS-KFG 215
+ NGT + G ++ + + A ++F+ +L DVT+ L E F +
Sbjct: 79 QTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRVHYP 138
Query: 216 KIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
+ + D N G S+G+GFV F + ++ RA+ MNG ++ + + A K +
Sbjct: 139 SVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMTEMNGVFCSTRPMRISMATPK--KTT 196
Query: 275 ILRHQFEEKRK----------ERILKYKG----SNVYVKNIDDDVTDEELKAHFSQCGTI 320
+ Q+ + +++ G + ++V N+D + T+E+L+ F Q G I
Sbjct: 197 SFQQQYAVPKAFYPAPAYTAPVQVVSADGDVTNTTIFVGNLDPNATEEDLRQTFLQLGEI 256
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373
S K+ +G GFV F++ A +A+ G+++ ++P+ ++ ++++
Sbjct: 257 ASVKIP-----AGRGCGFVQFATRTSAEEAIQRMQGHVIGQQPVRISWGKKQD 304
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 44/243 (18%)
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPD 242
P+ + L++ +L E +L F+ G++ S+ I R++ G G+GFV F +
Sbjct: 13 PATLEEVRTLWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQPEGYGFVEFVSHA 72
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE-----EKRKERILKYKGSNVY 297
A R L+ NG+ + EQ R + E+R + ++ +++
Sbjct: 73 AAERILQTYNGTQMPGT-------------EQTFRLNWASFGIGERRPDAGPEH---SIF 116
Query: 298 VKNIDDDVTD----EELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVN 352
V ++ DVTD E + H+ ++ AKV+ D G +KG+GFV F+ E ++A+
Sbjct: 117 VGDLAPDVTDYLLQETFRVHYP---SVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMT 173
Query: 353 TFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPG 412
+G +P+ +++A K + Q QYA V + YP+ YT P
Sbjct: 174 EMNGVFCSTRPMRISMATPK--KTTSFQQQYA------------VPKAFYPAPAYTAPVQ 219
Query: 413 IVS 415
+VS
Sbjct: 220 VVS 222
>gi|387050|gb|AAA36966.1| nucleolin, C23, partial [Cricetulus griseus]
Length = 679
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 174/350 (49%), Gaps = 34/350 (9%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
+TTP +L++G+L+P+ + EL A SE + + V D TG + +GYV+F S D
Sbjct: 269 STTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLE 327
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVA-NLFVKNLIESIDNVRLQEMFQNFGNI 126
+A+E+ ++ G +++ + D++K A L KNL +I L+E+F++ I
Sbjct: 328 KALEL-TGLKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEI 385
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDRVL 183
S+DGKSKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 386 RLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTG 441
Query: 184 PSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
+ + + L + NL TEE L E F K + + +++ G S+G+ F+ F +
Sbjct: 442 KNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEFASF 498
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS-NVYVKN 300
+DA+ AL + N I + +R + + R + + S ++VK
Sbjct: 499 EDAKEALNSCNKMEIEGRT---------------IRLELQGPRGSPNARSQPSKTLFVKG 543
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+ +D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 544 LSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 591
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 131/259 (50%), Gaps = 24/259 (9%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + +R+ S G+S Y+ F S DA + +E
Sbjct: 360 TLLAKNLSFNITEDELKEVFED---ALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEE 414
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVAN---------LFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ ++ N L + NL S LQE+F+
Sbjct: 415 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 474
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV ++ GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 475 TFI---KVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTI---RLELQGPRGS 528
Query: 184 PSPAAKYT-NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +
Sbjct: 529 PNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEE 586
Query: 243 DARRALEAM-NGSVIGSKV 260
DA+ A EAM +G + G+KV
Sbjct: 587 DAKAAKEAMEDGEIDGNKV 605
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 35/289 (12%)
Query: 92 PDARKSGVA--------NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHG 143
P+A+K V NLF+ NL + L+ V G ++ G
Sbjct: 257 PEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTGTNRKFG 316
Query: 144 FVQFETEESANAAIENLNGTTVGDKRIYV----GRFIKKSDRVLPSPAAKYTNLFMKNLD 199
+V FE+ E A+E L G V I + GR KK AA+ L KNL
Sbjct: 317 YVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVR------AAR--TLLAKNLS 367
Query: 200 SDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK 259
++TE+ L E F +I L+++D G S+G ++ F + DA + LE G+ I +
Sbjct: 368 FNITEDELKEVFEDALEI--RLVSQD--GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 423
Query: 260 VLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT 319
+ +K +R+ E K + + + N+ T+E L+ F +
Sbjct: 424 SVSLYYTGEKGQRQ-------ERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATF 476
Query: 320 ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
I KV ++++G +KG+ F+ F+S E+A +A+N+ + + + + + +
Sbjct: 477 I---KVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 522
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 21/185 (11%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NLF+ NL+ + + L S+ L + GT+R FG+V+F++ +D +ALE
Sbjct: 274 NLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELT 333
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
V G+++ ++ + + + +K R + + KN+ ++T++ELK
Sbjct: 334 GLKVFGNEI-------------KLEKPKGRDSKKVRAAR----TLLAKNLSFNITEDELK 376
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F I + + G +KG ++ F S +A K + G + + + +
Sbjct: 377 EVFEDALEIR----LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 432
Query: 372 KEDRQ 376
K RQ
Sbjct: 433 KGQRQ 437
>gi|149016331|gb|EDL75577.1| nucleolin, isoform CRA_b [Rattus norvegicus]
Length = 698
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 174/352 (49%), Gaps = 40/352 (11%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEF---KSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
TTP +L++G+L+P+ + EL A SE LA+V D TG + +GYV+F S D
Sbjct: 293 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV----DVRTGTNRKFGYVDFESAED 348
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVA-NLFVKNLIESIDNVRLQEMFQNFG 124
+A+E+ ++ G +++ + D++K A L KNL +I L+E+F++
Sbjct: 349 LEKALEL-TGLKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAV 406
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDR 181
I S+DG+SKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 407 EIRLV----SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQER 462
Query: 182 VLPSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
+ + + L + NL TEE L E F K + + ++ +G S+G+ F+ F
Sbjct: 463 TGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFA 519
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS-NVYV 298
+ +DA+ AL + N I + +R + + R + + S ++V
Sbjct: 520 SFEDAKEALNSCNKMEIEGRT---------------IRLELQGPRGSPNARSQPSKTLFV 564
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
K + +D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 565 KGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 614
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 130/259 (50%), Gaps = 24/259 (9%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + +V + S GRS Y+ F S DA + +E
Sbjct: 383 TLLAKNLSFNITEDELKEVFED-----AVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEE 437
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVAN---------LFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ ++ N L + NL S LQE+F+
Sbjct: 438 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 497
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV + GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 498 TFI---KVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTI---RLELQGPRGS 551
Query: 184 PSPAAKYT-NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +
Sbjct: 552 PNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEE 609
Query: 243 DARRALEAM-NGSVIGSKV 260
DA+ A EAM +G + G+KV
Sbjct: 610 DAKAAKEAMEDGEIDGNKV 628
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 35/261 (13%)
Query: 101 NLFVKNLIESID----NVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAA 156
NLF+ NL + V + E+F ++ + V T G ++ G+V FE+ E A
Sbjct: 297 NLFIGNLNPNKSVAELKVAISELFAK-NDLAAVDVRT---GTNRKFGYVDFESAEDLEKA 352
Query: 157 IENLNGTTVGDKRIYV----GRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
+E L G V I + GR KK AA+ L KNL ++TE+ L E F
Sbjct: 353 LE-LTGLKVFGNEIKLEKPKGRDSKKVR------AAR--TLLAKNLSFNITEDELKEVFE 403
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
+I L+++D G S+G ++ F + DA + LE G+ I + + +K +R
Sbjct: 404 DAVEI--RLVSQD--GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR 459
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
+ E K + + + N+ T+E L+ F + I KV ++ G
Sbjct: 460 Q-------ERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNPHGK 509
Query: 333 NKGFGFVCFSSPEEASKAVNT 353
+KG+ F+ F+S E+A +A+N+
Sbjct: 510 SKGYAFIEFASFEDAKEALNS 530
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NLF+ NL+ + + L S+ L GT+R FG+V+F++ +D +ALE
Sbjct: 297 NLFIGNLNPNKSVAELKVAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKALELT 356
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
V G+++ ++ + + + +K R + + KN+ ++T++ELK
Sbjct: 357 GLKVFGNEI-------------KLEKPKGRDSKKVRAAR----TLLAKNLSFNITEDELK 399
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F I + + G +KG ++ F S +A K + G + + + +
Sbjct: 400 EVFEDAVEIR----LVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 455
Query: 372 KEDRQ 376
K RQ
Sbjct: 456 KGQRQ 460
>gi|225435468|ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 447
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 135/284 (47%), Gaps = 42/284 (14%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L++GDL V + L F+ + S+++ ++ TG+ YG+V F+S A R ++
Sbjct: 42 TLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQA 101
Query: 73 KNHTQLHG--KMLRISWSC-----RDPDARKSGVANLFVKNLIESIDNVRLQEMFQ-NFG 124
N TQ+ G + R++W+ R PDA ++FV +L + + LQE F+ +
Sbjct: 102 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPE--HSIFVGDLAPDVTDYLLQETFRAQYP 159
Query: 125 NIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD--- 180
++ KV T + G++KG+GFV+F E N A+ +NG + + + K
Sbjct: 160 SVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGF 219
Query: 181 ----------------------RVLPSP-AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ LP+ T +F+ NLD +VTEE L + FS+FG++
Sbjct: 220 QQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLDPNVTEEELKQIFSQFGEL 279
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+ I RG GFV F A A++ M G+VIG V+
Sbjct: 280 VYVKIP-----AGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVV 318
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 145/327 (44%), Gaps = 34/327 (10%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
V L++ +L +D L F + G +IS K+ ++ G+ +G+GFV+F + +A +
Sbjct: 40 VRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERIL 99
Query: 158 ENLNGTTV-GDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF-SKFG 215
+ NGT + G ++ + + A ++F+ +L DVT+ L E F +++
Sbjct: 100 QAYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYP 159
Query: 216 KIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
+ + D N G ++G+GFV F + + RA+ MNG ++ + + A K
Sbjct: 160 SVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGF 219
Query: 275 ILRHQFEEKRKERILKY--------------KGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
++ K Y + ++V N+D +VT+EELK FSQ G +
Sbjct: 220 QQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLDPNVTEEELKQIFSQFGEL 279
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
K+ +G GFV F + A +A+ G ++ + + ++ + +
Sbjct: 280 VYVKIP-----AGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRISWGRSPTAK----- 329
Query: 381 LQYAQHMAGIEGSSANVIPSGYPSLYY 407
Q + G G A+ PS + S YY
Sbjct: 330 ----QDLPGSWGQQAD--PSQWSSAYY 350
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 24/198 (12%)
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPD 242
P+ + L++ +L V E +L F+ G++ S+ I R++ G G+GFV F +
Sbjct: 34 PTSVEEVRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 93
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE-----EKRKERILKYKGSNVY 297
A R L+A NG+ + EQ R + E+R + ++ +++
Sbjct: 94 AAERILQAYNGT-------------QMPGTEQTFRLNWASFGIGERRPDAGPEH---SIF 137
Query: 298 VKNIDDDVTDEELKAHF-SQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFH 355
V ++ DVTD L+ F +Q ++ AKV+ D G KG+GFV FS E ++A+ +
Sbjct: 138 VGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMN 197
Query: 356 GYMLHRKPLYVAIAQRKE 373
G +P+ ++ A K+
Sbjct: 198 GVYCSTRPMRISAATPKK 215
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 3 VVPPTATTPA-------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCY 55
PP PA +++VG+L P+VT+ EL FS+F L V++ GR C
Sbjct: 237 TTPPLQALPADNDINNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKI----PAGRG-C- 290
Query: 56 GYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARK 96
G+V F + A AI+ T + ++RISW R P A++
Sbjct: 291 GFVQFGTRTSAEEAIQRMQGTVIGQLVVRISWG-RSPTAKQ 330
>gi|170042459|ref|XP_001848942.1| polyadenylate-binding protein [Culex quinquefasciatus]
gi|167866018|gb|EDS29401.1| polyadenylate-binding protein [Culex quinquefasciatus]
Length = 339
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 133/256 (51%), Gaps = 33/256 (12%)
Query: 119 MFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178
MF + GN++SCKVA G SKG+ FV F SA++AI+ +NG V + V
Sbjct: 1 MFSSVGNVLSCKVALDIQGCSKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAV------ 54
Query: 179 SDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
SP +T L ++N +T+ L E F+ +G I + SRG GF+ +
Sbjct: 55 ------SPL--FTKLHVRNFGDRLTQTTLQELFAPYGSI------KAHGVKSRGCGFIIY 100
Query: 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAER-EQILRHQFEEKRKERILKYKGSNVY 297
D+P+ A ALEA+NG K L +A + E++L + R+ + + V+
Sbjct: 101 DSPEAAGHALEALNG-----KALSDGKALRVVPVPERVL------QPAPRLAEGEAVQVF 149
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGY 357
V+N+D + + L F+ G + +++ E+G +KGFGFV ++S E+A++A+ +
Sbjct: 150 VRNLDASIDNRHLGELFAPYGDVQRGFIVK-EQGKSKGFGFVTYASGEQAARAIVEMNDR 208
Query: 358 MLHRKPLYVAIAQRKE 373
+ K +YV +A+ KE
Sbjct: 209 EVAGKRIYVVLARGKE 224
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 121/241 (50%), Gaps = 25/241 (10%)
Query: 35 FKSLASVRVCKDS--TTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDP 92
F S+ +V CK + G S Y +V F + A AI+ N ++G L +S P
Sbjct: 2 FSSVGNVLSCKVALDIQGCSKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAVS-----P 56
Query: 93 DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEES 152
K L V+N + + LQE+F +G+I + V KS+G GF+ +++ E+
Sbjct: 57 LFTK-----LHVRNFGDRLTQTTLQELFAPYGSIKAHGV------KSRGCGFIIYDSPEA 105
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVL-PSP---AAKYTNLFMKNLDSDVTEEHLV 208
A A+E LNG + D + R + +RVL P+P + +F++NLD+ + HL
Sbjct: 106 AGHALEALNGKALSDGKAL--RVVPVPERVLQPAPRLAEGEAVQVFVRNLDASIDNRHLG 163
Query: 209 EKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268
E F+ +G + I + E G S+GFGFV + + + A RA+ MN + K +Y A+
Sbjct: 164 ELFAPYGDVQRGFIVK-EQGKSKGFGFVTYASGEQAARAIVEMNDREVAGKRIYVVLARG 222
Query: 269 K 269
K
Sbjct: 223 K 223
>gi|15239715|ref|NP_197436.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75331115|sp|Q8VXZ9.1|R47BP_ARATH RecName: Full=Polyadenylate-binding protein RBP47B';
Short=Poly(A)-binding protein RBP47B'; AltName:
Full=RNA-binding protein 47B'; Short=AtRBP47B prime;
Short=AtRBP47B'
gi|18377731|gb|AAL67015.1| putative DNA binding protein ACBF [Arabidopsis thaliana]
gi|21281189|gb|AAM45052.1| putative DNA binding protein ACBF [Arabidopsis thaliana]
gi|332005306|gb|AED92689.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 425
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 138/285 (48%), Gaps = 43/285 (15%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L++GDL V + L FS+ L SV+V ++ TG+ YG++ F+S A R ++
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 73 KNHTQLHGKML--RISW----SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ-NFGN 125
N TQ+ G L R++W S + DA ++FV +L + + LQE F+ ++ +
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSGQKVDAGPD--HSIFVGDLAPDVTDYLLQETFRVHYSS 142
Query: 126 IISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNG----------------TTVGDK 168
+ KV T G+SKG+GFV+F E N A+ +NG VG +
Sbjct: 143 VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQ 202
Query: 169 RIYVGRFIKKSD--RVLPSPAAKY----------TNLFMKNLDSDVTEEHLVEKFSKFGK 216
+ YV + + + +P Y T + + NLD +VTEE L + FS+ G+
Sbjct: 203 QQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGE 262
Query: 217 IASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+ + I ++G+G+V F A A++ M G VIG + +
Sbjct: 263 VIYVKIP-----ATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAV 302
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 36/297 (12%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
V L++ +L +D L F G ++S KV ++ G+ +G+GF++F + +A +
Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
Query: 158 ENLNGTTVGDK----RIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS- 212
+ NGT + R+ F +V P ++F+ +L DVT+ L E F
Sbjct: 83 QTYNGTQMPGTELTFRLNWASF-GSGQKVDAGPDH---SIFVGDLAPDVTDYLLQETFRV 138
Query: 213 KFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271
+ + + D G S+G+GFV F + RA+ MNG ++ + + A K
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK-- 196
Query: 272 REQILRHQFEEKRKERIL------------------KYKGSNVYVKNIDDDVTDEELKAH 313
+ ++ Q+ K + + + V N+D +VT+EELK
Sbjct: 197 KNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKA 256
Query: 314 FSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FSQ G + K+ KG+G+V F + A +AV G ++ ++ + ++ ++
Sbjct: 257 FSQLGEVIYVKIP-----ATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSK 308
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 25/199 (12%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEA 250
L++ +L V E +L FS+ G++ S+ + R++ G G+GF+ F + A R L+
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 251 MNGSVI-GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD-- 307
NG+ + G+++ + ++ F +K + +++V ++ DVTD
Sbjct: 85 YNGTQMPGTELTF-----------RLNWASFGSGQK--VDAGPDHSIFVGDLAPDVTDYL 131
Query: 308 --EELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
E + H+S ++ AKV+ D G +KG+GFV F+ E ++A+ +G +P+
Sbjct: 132 LQETFRVHYS---SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPM 188
Query: 365 YVAIAQRKEDRQAHLQLQY 383
++ A K++ +Q QY
Sbjct: 189 RISAATPKKN--VGVQQQY 205
>gi|297746331|emb|CBI16387.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 135/284 (47%), Gaps = 42/284 (14%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L++GDL V + L F+ + S+++ ++ TG+ YG+V F+S A R ++
Sbjct: 42 TLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQA 101
Query: 73 KNHTQLHG--KMLRISWSC-----RDPDARKSGVANLFVKNLIESIDNVRLQEMFQ-NFG 124
N TQ+ G + R++W+ R PDA ++FV +L + + LQE F+ +
Sbjct: 102 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPE--HSIFVGDLAPDVTDYLLQETFRAQYP 159
Query: 125 NIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD--- 180
++ KV T + G++KG+GFV+F E N A+ +NG + + + K
Sbjct: 160 SVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGF 219
Query: 181 ----------------------RVLPSP-AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ LP+ T +F+ NLD +VTEE L + FS+FG++
Sbjct: 220 QQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLDPNVTEEELKQIFSQFGEL 279
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+ I RG GFV F A A++ M G+VIG V+
Sbjct: 280 VYVKIP-----AGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVV 318
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 145/327 (44%), Gaps = 34/327 (10%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
V L++ +L +D L F + G +IS K+ ++ G+ +G+GFV+F + +A +
Sbjct: 40 VRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERIL 99
Query: 158 ENLNGTTV-GDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF-SKFG 215
+ NGT + G ++ + + A ++F+ +L DVT+ L E F +++
Sbjct: 100 QAYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYP 159
Query: 216 KIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
+ + D N G ++G+GFV F + + RA+ MNG ++ + + A K
Sbjct: 160 SVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGF 219
Query: 275 ILRHQFEEKRKERILKY--------------KGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
++ K Y + ++V N+D +VT+EELK FSQ G +
Sbjct: 220 QQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLDPNVTEEELKQIFSQFGEL 279
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
K+ +G GFV F + A +A+ G ++ + + ++ + +
Sbjct: 280 VYVKIP-----AGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRISWGRSPTAK----- 329
Query: 381 LQYAQHMAGIEGSSANVIPSGYPSLYY 407
Q + G G A+ PS + S YY
Sbjct: 330 ----QDLPGSWGQQAD--PSQWSSAYY 350
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 24/198 (12%)
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPD 242
P+ + L++ +L V E +L F+ G++ S+ I R++ G G+GFV F +
Sbjct: 34 PTSVEEVRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 93
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE-----EKRKERILKYKGSNVY 297
A R L+A NG+ + EQ R + E+R + ++ +++
Sbjct: 94 AAERILQAYNGT-------------QMPGTEQTFRLNWASFGIGERRPDAGPEH---SIF 137
Query: 298 VKNIDDDVTDEELKAHF-SQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFH 355
V ++ DVTD L+ F +Q ++ AKV+ D G KG+GFV FS E ++A+ +
Sbjct: 138 VGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMN 197
Query: 356 GYMLHRKPLYVAIAQRKE 373
G +P+ ++ A K+
Sbjct: 198 GVYCSTRPMRISAATPKK 215
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 3 VVPPTATTPA-------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCY 55
PP PA +++VG+L P+VT+ EL FS+F L V++ GR C
Sbjct: 237 TTPPLQALPADNDINNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKI----PAGRG-C- 290
Query: 56 GYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARK 96
G+V F + A AI+ T + ++RISW R P A++
Sbjct: 291 GFVQFGTRTSAEEAIQRMQGTVIGQLVVRISWG-RSPTAKQ 330
>gi|128844|sp|P13383.3|NUCL_RAT RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|205792|gb|AAA41732.1| nucleolin [Rattus norvegicus]
Length = 713
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 174/352 (49%), Gaps = 40/352 (11%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEF---KSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
TTP +L++G+L+P+ + EL A SE LA+V D TG + +GYV+F S D
Sbjct: 308 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV----DVRTGTNRKFGYVDFESAED 363
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVA-NLFVKNLIESIDNVRLQEMFQNFG 124
+A+E+ ++ G +++ + D++K A L KNL +I L+E+F++
Sbjct: 364 LEKALEL-TGLKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAV 421
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDR 181
I S+DG+SKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 422 EIRLV----SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQER 477
Query: 182 VLPSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
+ + + L + NL TEE L E F K + + ++ +G S+G+ F+ F
Sbjct: 478 TGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFA 534
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS-NVYV 298
+ +DA+ AL + N I + +R + + R + + S ++V
Sbjct: 535 SFEDAKEALNSCNKMEIEGRT---------------IRLELQGPRGSPNARSQPSKTLFV 579
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
K + +D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 580 KGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 629
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 130/259 (50%), Gaps = 24/259 (9%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + +V + S GRS Y+ F S DA + +E
Sbjct: 398 TLLAKNLSFNITEDELKEVFED-----AVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEE 452
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVAN---------LFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ ++ N L + NL S LQE+F+
Sbjct: 453 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 512
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV + GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 513 TFI---KVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTI---RLELQGPRGS 566
Query: 184 PSPAAKYT-NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +
Sbjct: 567 PNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEE 624
Query: 243 DARRALEAM-NGSVIGSKV 260
DA+ A EAM +G + G+KV
Sbjct: 625 DAKAAKEAMEDGEIDGNKV 643
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 35/261 (13%)
Query: 101 NLFVKNLIESID----NVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAA 156
NLF+ NL + V + E+F ++ + V T G ++ G+V FE+ E A
Sbjct: 312 NLFIGNLNPNKSVAELKVAISELFAK-NDLAAVDVRT---GTNRKFGYVDFESAEDLEKA 367
Query: 157 IENLNGTTVGDKRIYV----GRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
+E L G V I + GR KK AA+ L KNL ++TE+ L E F
Sbjct: 368 LE-LTGLKVFGNEIKLEKPKGRDSKKVR------AAR--TLLAKNLSFNITEDELKEVFE 418
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
+I L+++D G S+G ++ F + DA + LE G+ I + + +K +R
Sbjct: 419 DAVEI--RLVSQD--GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR 474
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
+ E K + + + N+ T+E L+ F + I KV ++ G
Sbjct: 475 Q-------ERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNPHGK 524
Query: 333 NKGFGFVCFSSPEEASKAVNT 353
+KG+ F+ F+S E+A +A+N+
Sbjct: 525 SKGYAFIEFASFEDAKEALNS 545
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NLF+ NL+ + + L S+ L GT+R FG+V+F++ +D +ALE
Sbjct: 312 NLFIGNLNPNKSVAELKVAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKALELT 371
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
V G+++ ++ + + + +K R + + KN+ ++T++ELK
Sbjct: 372 GLKVFGNEI-------------KLEKPKGRDSKKVRAAR----TLLAKNLSFNITEDELK 414
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F I + + G +KG ++ F S +A K + G + + + +
Sbjct: 415 EVFEDAVEIR----LVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 470
Query: 372 KEDRQ 376
K RQ
Sbjct: 471 KGQRQ 475
>gi|161760644|ref|NP_036881.2| nucleolin [Rattus norvegicus]
gi|55250726|gb|AAH85751.1| Nucleolin [Rattus norvegicus]
gi|149016332|gb|EDL75578.1| nucleolin, isoform CRA_c [Rattus norvegicus]
Length = 714
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 174/352 (49%), Gaps = 40/352 (11%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEF---KSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
TTP +L++G+L+P+ + EL A SE LA+V D TG + +GYV+F S D
Sbjct: 309 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV----DVRTGTNRKFGYVDFESAED 364
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVA-NLFVKNLIESIDNVRLQEMFQNFG 124
+A+E+ ++ G +++ + D++K A L KNL +I L+E+F++
Sbjct: 365 LEKALEL-TGLKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAV 422
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDR 181
I S+DG+SKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 423 EIRLV----SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQER 478
Query: 182 VLPSP--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
+ + + L + NL TEE L E F K + + ++ +G S+G+ F+ F
Sbjct: 479 TGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFA 535
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS-NVYV 298
+ +DA+ AL + N I + +R + + R + + S ++V
Sbjct: 536 SFEDAKEALNSCNKMEIEGRT---------------IRLELQGPRGSPNARSQPSKTLFV 580
Query: 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
K + +D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 581 KGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 630
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 130/259 (50%), Gaps = 24/259 (9%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + +V + S GRS Y+ F S DA + +E
Sbjct: 399 TLLAKNLSFNITEDELKEVFED-----AVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEE 453
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVAN---------LFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ ++ N L + NL S LQE+F+
Sbjct: 454 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 513
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV + GKSKG+ F++F + E A A+ + N + + I R + R
Sbjct: 514 TFI---KVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTI---RLELQGPRGS 567
Query: 184 PSPAAKYT-NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
P+ ++ + LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +
Sbjct: 568 PNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEE 625
Query: 243 DARRALEAM-NGSVIGSKV 260
DA+ A EAM +G + G+KV
Sbjct: 626 DAKAAKEAMEDGEIDGNKV 644
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 35/261 (13%)
Query: 101 NLFVKNLIESID----NVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAA 156
NLF+ NL + V + E+F ++ + V T G ++ G+V FE+ E A
Sbjct: 313 NLFIGNLNPNKSVAELKVAISELFAK-NDLAAVDVRT---GTNRKFGYVDFESAEDLEKA 368
Query: 157 IENLNGTTVGDKRIYV----GRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212
+E L G V I + GR KK AA+ L KNL ++TE+ L E F
Sbjct: 369 LE-LTGLKVFGNEIKLEKPKGRDSKKVR------AAR--TLLAKNLSFNITEDELKEVFE 419
Query: 213 KFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAER 272
+I L+++D G S+G ++ F + DA + LE G+ I + + +K +R
Sbjct: 420 DAVEI--RLVSQD--GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR 475
Query: 273 EQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332
+ E K + + + N+ T+E L+ F + I KV ++ G
Sbjct: 476 Q-------ERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNPHGK 525
Query: 333 NKGFGFVCFSSPEEASKAVNT 353
+KG+ F+ F+S E+A +A+N+
Sbjct: 526 SKGYAFIEFASFEDAKEALNS 546
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NLF+ NL+ + + L S+ L GT+R FG+V+F++ +D +ALE
Sbjct: 313 NLFIGNLNPNKSVAELKVAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKALELT 372
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
V G+++ ++ + + + +K R + + KN+ ++T++ELK
Sbjct: 373 GLKVFGNEI-------------KLEKPKGRDSKKVRAAR----TLLAKNLSFNITEDELK 415
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F I + + G +KG ++ F S +A K + G + + + +
Sbjct: 416 EVFEDAVEIR----LVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 471
Query: 372 KEDRQ 376
K RQ
Sbjct: 472 KGQRQ 476
>gi|359478387|ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Vitis vinifera]
Length = 438
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 135/284 (47%), Gaps = 42/284 (14%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L++GDL V + L F+ + S+++ ++ TG+ YG+V F+S A R ++
Sbjct: 42 TLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQA 101
Query: 73 KNHTQLHG--KMLRISWSC-----RDPDARKSGVANLFVKNLIESIDNVRLQEMFQ-NFG 124
N TQ+ G + R++W+ R PDA ++FV +L + + LQE F+ +
Sbjct: 102 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPE--HSIFVGDLAPDVTDYLLQETFRAQYP 159
Query: 125 NIISCKVATSED-GKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD--- 180
++ KV T + G++KG+GFV+F E N A+ +NG + + + K
Sbjct: 160 SVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGF 219
Query: 181 ----------------------RVLPSP-AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
+ LP+ T +F+ NLD +VTEE L + FS+FG++
Sbjct: 220 QQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLDPNVTEEELKQIFSQFGEL 279
Query: 218 ASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+ I RG GFV F A A++ M G+VIG V+
Sbjct: 280 VYVKIP-----AGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVV 318
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 147/329 (44%), Gaps = 28/329 (8%)
Query: 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAI 157
V L++ +L +D L F + G +IS K+ ++ G+ +G+GFV+F + +A +
Sbjct: 40 VRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERIL 99
Query: 158 ENLNGTTV-GDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKF-SKFG 215
+ NGT + G ++ + + A ++F+ +L DVT+ L E F +++
Sbjct: 100 QAYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYP 159
Query: 216 KIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQ 274
+ + D N G ++G+GFV F + + RA+ MNG ++ + + A K
Sbjct: 160 SVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGF 219
Query: 275 ILRHQFEEKRKERILKY--------------KGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
++ K Y + ++V N+D +VT+EELK FSQ G +
Sbjct: 220 QQQYAAAAKALYPAPAYTTPPLQALPADNDINNTTIFVGNLDPNVTEEELKQIFSQFGEL 279
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ 380
K+ +G GFV F + A +A+ G ++ + + ++ + +QA
Sbjct: 280 VYVKIP-----AGRGCGFVQFGTRTSAEEAIQRMQGTVIGQLVVRISWGRSPTAKQADPS 334
Query: 381 LQYAQHMAGIEGSSANVIPSGY---PSLY 406
Q++ G G + P G PSLY
Sbjct: 335 -QWSSAYYGY-GQGYDAYPYGATQDPSLY 361
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 24/198 (12%)
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPD 242
P+ + L++ +L V E +L F+ G++ S+ I R++ G G+GFV F +
Sbjct: 34 PTSVEEVRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHA 93
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE-----EKRKERILKYKGSNVY 297
A R L+A NG+ + EQ R + E+R + ++ +++
Sbjct: 94 AAERILQAYNGT-------------QMPGTEQTFRLNWASFGIGERRPDAGPEH---SIF 137
Query: 298 VKNIDDDVTDEELKAHF-SQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFH 355
V ++ DVTD L+ F +Q ++ AKV+ D G KG+GFV FS E ++A+ +
Sbjct: 138 VGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMN 197
Query: 356 GYMLHRKPLYVAIAQRKE 373
G +P+ ++ A K+
Sbjct: 198 GVYCSTRPMRISAATPKK 215
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 3 VVPPTATTPA-------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCY 55
PP PA +++VG+L P+VT+ EL FS+F L V++ GR C
Sbjct: 237 TTPPLQALPADNDINNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKI----PAGRG-C- 290
Query: 56 GYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKS 97
G+V F + A AI+ T + ++RISW R P A+++
Sbjct: 291 GFVQFGTRTSAEEAIQRMQGTVIGQLVVRISWG-RSPTAKQA 331
>gi|406602053|emb|CCH46373.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 694
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 117/217 (53%), Gaps = 12/217 (5%)
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKS-------GVANLFVKNLIESIDNVRLQEMFQN 122
I++K +L ++ S+ + P S N++V+ L I L ++F+
Sbjct: 92 IKLKFMDKLKAQIFEKSFKLKFPQVEISVEFDALTHPGNIYVRGLGPEITTEDLFKIFEP 151
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FG I S K+ E G+SKG+GF+ + SA+ AI LNG V ++Y+ I K +R+
Sbjct: 152 FGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAISKLNGLLVNGSKLYLNHHIAKKERI 211
Query: 183 --LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIA--RDENGTSRGFGFVNF 238
+ + +TNL++KNL D T + F+KFG+I+S + D + TS+ FGF+NF
Sbjct: 212 QRIDFEKSNFTNLYIKNLPIDYTIDQFESLFAKFGEISSSFLPDLNDGDQTSKRFGFINF 271
Query: 239 DNPDDARRALEAMNGSVIG-SKVLYAARAQKKAEREQ 274
N + A A+E++N I ++ L +RAQ++ ER +
Sbjct: 272 KNHESAISAIESLNNFEISPNQFLSVSRAQRRDERNE 308
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 13/192 (6%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N++++ L ++T E L + F FG+I S I DE G S+G+GF+N+ + A A+ +
Sbjct: 130 NIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAISKL 189
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG ++ LY K ER I R FE K +N+Y+KN+ D T ++ +
Sbjct: 190 NGLLVNGSKLYLNHHIAKKER--IQRIDFE--------KSNFTNLYIKNLPIDYTIDQFE 239
Query: 312 AHFSQCGTITSAKV--MRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH-RKPLYVAI 368
+ F++ G I+S+ + + D +K FGF+ F + E A A+ + + + + + L V+
Sbjct: 240 SLFAKFGEISSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSR 299
Query: 369 AQRKEDRQAHLQ 380
AQR+++R
Sbjct: 300 AQRRDERNEQFH 311
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 10/182 (5%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T P ++YV L P++T +LF F F + S ++ D GRS YG++N+ A
Sbjct: 126 THPGNIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDE-FGRSKGYGFINYSDGSSADD 184
Query: 69 AIEVKNHTQLHGKMLRISWS------CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQN 122
AI N ++G L ++ + D KS NL++KNL + + +F
Sbjct: 185 AISKLNGLLVNGSKLYLNHHIAKKERIQRIDFEKSNFTNLYIKNLPIDYTIDQFESLFAK 244
Query: 123 FGNIISCKVATSEDGK--SKGHGFVQFETEESANAAIENLNGTTVG-DKRIYVGRFIKKS 179
FG I S + DG SK GF+ F+ ESA +AIE+LN + ++ + V R ++
Sbjct: 245 FGEISSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSRAQRRD 304
Query: 180 DR 181
+R
Sbjct: 305 ER 306
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 11/152 (7%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
SN+YV+N+ + D L + F+ G I SAK+M ++G ++G+GFVCF + EAS+A+
Sbjct: 425 SNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIA 484
Query: 354 FHGYMLHRKPLYVAIAQRKEDRQ--AHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPP 411
HG +LH + L+V+ AQ+ ++ Q Q H G + P+ P YY T
Sbjct: 485 MHGNVLHGQMLHVSFAQKNNKKRFGKQQQQQIPIHPNGSYYNGLYQNPNQPPYQYYNTQA 544
Query: 412 GIVSQVPPRPGLMYQPLGLRTGWRA--NGFVP 441
G VPP G G G+R+ NG+ P
Sbjct: 545 G--QPVPPPSG-----NGYGNGYRSYYNGYKP 569
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 55/90 (61%)
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+P+P + +NL+++NL + + L F+ FG I S I + G SRG+GFV F
Sbjct: 417 IPAPDQQPSNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSP 476
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAER 272
+A RAL AM+G+V+ ++L+ + AQK ++
Sbjct: 477 EASRALIAMHGNVLHGQMLHVSFAQKNNKK 506
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 12/115 (10%)
Query: 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEE 151
PD + S NL+V+NL SID+ L F FG I+S K+ T+++G+S+G+GFV F T
Sbjct: 420 PDQQPS---NLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSP 476
Query: 152 SANAAIENLNGTTVGDKRIYVG--------RFIKKSDRVLP-SPAAKYTNLFMKN 197
A+ A+ ++G + + ++V RF K+ + +P P Y N +N
Sbjct: 477 EASRALIAMHGNVLHGQMLHVSFAQKNNKKRFGKQQQQQIPIHPNGSYYNGLYQN 531
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
+P P++LYV +L P + D L +F+ F + S ++ + G S YG+V F +
Sbjct: 417 IPAPDQQPSNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMT-TDEGESRGYGFVCFRTS 475
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDAR 95
+A RA+ + LHG+ML +S++ ++ R
Sbjct: 476 PEASRALIAMHGNVLHGQMLHVSFAQKNNKKR 507
>gi|89266927|emb|CAJ82281.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Xenopus (Silurana) tropicalis]
Length = 374
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 141/314 (44%), Gaps = 50/314 (15%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 62 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ P + ANL+V L +++ L+++F +G I
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYA--RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 179
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG---------TTV----------- 165
I+ ++ + G S+G GF++F+ A AI+ LNG TV
Sbjct: 180 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVN 239
Query: 166 ---------GDKRIYVGRFIKKSDRVLPSP-----------------AAKYTNLFMKNLD 199
R Y G +++ R SP A +F+ NL
Sbjct: 240 HTILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLA 299
Query: 200 SDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGS 258
D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++NG +G
Sbjct: 300 PDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 359
Query: 259 KVLYAARAQKKAER 272
+VL + K +
Sbjct: 360 RVLQVSFKTSKTHK 373
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 141/313 (45%), Gaps = 45/313 (14%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ L+ +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAA-KYTNLFMKNLDSDVTEEHLVEKFSKFGKIA 218
LNG + K I K PS A+ + NL++ L +T++ L + FS++G+I
Sbjct: 128 LNGLRLQTKTI-------KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 180
Query: 219 SLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG-----SVIGSKVLYAARAQKKAER 272
+ I D+ G SRG GF+ FD +A A++ +NG + V +A +K
Sbjct: 181 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNH 240
Query: 273 -------------------EQILRHQFEEKRKERILKYKGSN----------VYVKNIDD 303
+Q R +F + + G N ++V N+
Sbjct: 241 TILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAP 300
Query: 304 DVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ + +GY L +
Sbjct: 301 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 360
Query: 363 PLYVAIAQRKEDR 375
L V+ K +
Sbjct: 361 VLQVSFKTSKTHK 373
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 20/168 (11%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T+E L F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG + +K + + A+ + + +N+YV + +T +E
Sbjct: 127 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 168
Query: 310 LKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
L+ FSQ G I +++++ D+ G+++G GF+ F EA +A+ +G
Sbjct: 169 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 127 TLNGLRLQTKTIKVSYAR 144
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
P A T ++V +L PD + L+ F F ++ +V+V +D T + +G+V +
Sbjct: 284 PGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 343
Query: 65 DAIRAIEVKNHTQLHGKMLRISW 87
+A AI N +L ++L++S+
Sbjct: 344 EAAMAIASLNGYRLGDRVLQVSF 366
>gi|126334002|ref|XP_001364932.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Monodelphis
domestica]
Length = 347
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 51/315 (16%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ P + ANL+V L +++ L+++F +G I
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYA--RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG---------TTV----------- 165
I+ ++ + G S+G GF++F+ A AI+ LNG TV
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 211
Query: 166 ---------GDKRIYVGRFIKKSDRV------------------LPSPAAKYTNLFMKNL 198
R Y G +++ R +P A +F+ NL
Sbjct: 212 QAILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHAGTGWCIFVYNL 271
Query: 199 DSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIG 257
D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++NG +G
Sbjct: 272 APDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 331
Query: 258 SKVLYAARAQKKAER 272
+VL + K +
Sbjct: 332 DRVLQVSFKTNKTHK 346
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 144/316 (45%), Gaps = 48/316 (15%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158
NL V L +++ L+ +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAA-KYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
LNG + K I K PS A+ + NL++ L +T++ L + FS++G+I
Sbjct: 99 TLNGLRLQTKTI-------KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 218 ASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG-----SVIGSKVLYAARAQKKAE 271
+ I D+ G SRG GF+ FD +A A++ +NG + V +A +K
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 211
Query: 272 REQILRHQFEE----------KRKERILKYK---------------------GSNVYVKN 300
+ IL ++ ++ +R ++ G ++V N
Sbjct: 212 -QAILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHAGTGWCIFVYN 270
Query: 301 IDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYML 359
+ D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ + +GY L
Sbjct: 271 LAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRL 330
Query: 360 HRKPLYVAIAQRKEDR 375
+ L V+ K +
Sbjct: 331 GDRVLQVSFKTNKTHK 346
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
+P A T ++V +L PD + L+ F F ++ +V+V +D T + +G+V +
Sbjct: 256 IPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 315
Query: 64 HDAIRAIEVKNHTQLHGKMLRISW 87
+A AI N +L ++L++S+
Sbjct: 316 DEAAMAIASLNGYRLGDRVLQVSF 339
>gi|395514484|ref|XP_003761447.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Sarcophilus
harrisii]
Length = 347
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 51/315 (16%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
T + +L V L ++T EL F + S ++ +D TG+S YG+VN++ P DA
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AI N +L K +++S++ P + ANL+V L +++ L+++F +G I
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYA--RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 127 ISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG---------TTV----------- 165
I+ ++ + G S+G GF++F+ A AI+ LNG TV
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPSATEPITVKFANNPSQKTN 211
Query: 166 ---------GDKRIYVGRFIKKSDRV------------------LPSPAAKYTNLFMKNL 198
R Y G +++ R +P A +F+ NL
Sbjct: 212 QAILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHAGTGWCIFVYNL 271
Query: 199 DSDVTEEHLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIG 257
D E L + F FG + ++ + RD N +GFGFV N D+A A+ ++NG +G
Sbjct: 272 APDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 331
Query: 258 SKVLYAARAQKKAER 272
+VL + K +
Sbjct: 332 DRVLQVSFKTNKTHK 346
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 142/315 (45%), Gaps = 46/315 (14%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158
NL V L +++ L+ +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAA-KYTNLFMKNLDSDVTEEHLVEKFSKFGKI 217
LNG + K I K PS A+ + NL++ L +T++ L + FS++G+I
Sbjct: 99 TLNGLRLQTKTI-------KVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 218 ASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG----SVIGSKVLYAARAQKKAER 272
+ I D+ G SRG GF+ FD +A A++ +NG S + A +
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPSATEPITVKFANNPSQKTN 211
Query: 273 EQILRHQFEE----------KRKERILKYK---------------------GSNVYVKNI 301
+ IL ++ ++ +R ++ G ++V N+
Sbjct: 212 QAILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHAGTGWCIFVYNL 271
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360
D + L F G +T+ KV+RD KGFGFV ++ +EA+ A+ + +GY L
Sbjct: 272 APDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 331
Query: 361 RKPLYVAIAQRKEDR 375
+ L V+ K +
Sbjct: 332 DRVLQVSFKTNKTHK 346
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
+P A T ++V +L PD + L+ F F ++ +V+V +D T + +G+V +
Sbjct: 256 IPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 315
Query: 64 HDAIRAIEVKNHTQLHGKMLRISW 87
+A AI N +L ++L++S+
Sbjct: 316 DEAAMAIASLNGYRLGDRVLQVSF 339
>gi|449268380|gb|EMC79248.1| Nucleolin [Columba livia]
Length = 648
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 178/361 (49%), Gaps = 46/361 (12%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T+ S++VG+L EL EF ++ D G S +GYV+F S + +
Sbjct: 230 TSAFSVFVGNLVSTKDFEELKTGIKEFFGKKNIEAL-DVRIGASKRFGYVDFSSAEELDK 288
Query: 69 AIEVKNHTQLHGKMLR---------ISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
A+++ N +L G ++ I + ++ DAR LFVKNL + ++++
Sbjct: 289 ALQL-NGKKLMGLEVKLEKAKSKETIKENKKERDAR-----TLFVKNLPYRLTEDEMKDV 342
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--- 176
F+N + ++ +++G SKG +++F+TE AN A+E GT + D R V F
Sbjct: 343 FEN---ALEIRIVMNKEGNSKGMAYIEFKTEAEANKALEEKQGTEI-DGRAMVIDFTGEK 398
Query: 177 --KKSDRVLPSPAAKYTN--LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRG 232
++ +V + + + L + NL +EE L E F K +S+ + ++ G +G
Sbjct: 399 SHQEHQKVFSTGGGERESKTLIVNNLAYAASEEALQELFKK---ASSIKMPQNNQGRPKG 455
Query: 233 FGFVNFDNPDDARRALEAMNGSVIGSKVL---YAARAQKKAEREQILRHQFEEKRKERIL 289
+ FV F +DA+ AL + N + I + + ++++ +K +R F ++ K
Sbjct: 456 YAFVEFPTTEDAKEALNSCNNTEIEGRAIRLEFSSQGWQKGNMN--VRGGFNQQSK---- 509
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASK 349
++V+ + +D T+E L+ F G+I++ V + G +KGFGFV FSSPE+A
Sbjct: 510 -----TLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKA 562
Query: 350 A 350
A
Sbjct: 563 A 563
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 24/264 (9%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L+V +L +T+ E+ D F ++ +R+ + G S Y+ F + +A +A+E
Sbjct: 324 TLFVKNLPYRLTEDEMKDVF---ENALEIRIVMNKE-GNSKGMAYIEFKTEAEANKALEE 379
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGV----------ANLFVKNLIESIDNVRLQEMFQN 122
K T++ G+ + I ++ V L V NL + LQE+F+
Sbjct: 380 KQGTEIDGRAMVIDFTGEKSHQEHQKVFSTGGGERESKTLIVNNLAYAASEEALQELFKK 439
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV----GRFIKK 178
+I K+ + G+ KG+ FV+F T E A A+ + N T + + I + + K
Sbjct: 440 ASSI---KMPQNNQGRPKGYAFVEFPTTEDAKEALNSCNNTEIEGRAIRLEFSSQGWQKG 496
Query: 179 SDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238
+ V + LF++ L D TEE L E F G I++ ++ + G+S+GFGFV+F
Sbjct: 497 NMNVRGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDF 554
Query: 239 DNPDDARRALEAM-NGSVIGSKVL 261
+P+DA+ A EAM +G + G+KV+
Sbjct: 555 SSPEDAKAAKEAMEDGEIDGNKVI 578
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 119/268 (44%), Gaps = 38/268 (14%)
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQF 147
S +D + K+G+ F K IE++D VR+ G SK G+V F
Sbjct: 242 STKDFEELKTGIKEFFGKKNIEALD-VRI--------------------GASKRFGYVDF 280
Query: 148 ETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHL 207
+ E + A++ LNG + + + + K LF+KNL +TE+ +
Sbjct: 281 SSAEELDKALQ-LNGKKLMGLEVKLEKAKSKETIKENKKERDARTLFVKNLPYRLTEDEM 339
Query: 208 VEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267
+ F + I ++ G S+G ++ F +A +ALE G+ I + +
Sbjct: 340 KDVFEN---ALEIRIVMNKEGNSKGMAYIEFKTEAEANKALEEKQGTEIDGRAMVIDFTG 396
Query: 268 KKAEREQILRHQ--FEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKV 325
+K+ +E HQ F ER K + V N+ ++E L+ F + +I K+
Sbjct: 397 EKSHQE----HQKVFSTGGGERESK----TLIVNNLAYAASEEALQELFKKASSI---KM 445
Query: 326 MRDEKGINKGFGFVCFSSPEEASKAVNT 353
++ +G KG+ FV F + E+A +A+N+
Sbjct: 446 PQNNQGRPKGYAFVEFPTTEDAKEALNS 473
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L+V L D T+ L ++F + S R+ D TG S +G+V+F SP DA A E
Sbjct: 510 TLFVRGLSEDTTEETLRESF---EGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEA 566
Query: 73 KNHTQLHGKMLRISWS 88
++ G + + ++
Sbjct: 567 MEDGEIDGNKVILDFA 582
>gi|74214426|dbj|BAE40448.1| unnamed protein product [Mus musculus]
gi|74219790|dbj|BAE40485.1| unnamed protein product [Mus musculus]
Length = 707
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 171/356 (48%), Gaps = 52/356 (14%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TTP +L++G+L+P+ + EL A SE + + V D TG + +GYV+F S D +
Sbjct: 306 TTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVV-DVRTGTNWKFGYVDFESAEDLEK 364
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVA-NLFVKNLIESIDNVRLQEMFQNFGNII 127
A+E+ ++ G +++ + D++K A L KNL +I L+E+F++ I
Sbjct: 365 ALEL-TGLKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAMEIR 422
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDRV-- 182
S+DGKSKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 423 LV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGK 478
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ + + L + NL T+E L E F K + + ++ +G +G+ F+ F + +
Sbjct: 479 TSTWSGESKTLVLSNLSYSATKETLEEVFEK---ATFIKVPQNPHGKPKGYAFIEFASFE 535
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN------- 295
DA+ AL + N I + + L+ +GSN
Sbjct: 536 DAKEALNSCNKMEIEGRTIR--------------------------LELQGSNSRSQPSK 569
Query: 296 -VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
++VK + +D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 570 TLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 623
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 126/258 (48%), Gaps = 26/258 (10%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + +R+ S G+S Y+ F S DA + +E
Sbjct: 396 TLLAKNLSFNITEDELKEVFED---AMEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEE 450
Query: 73 KNHTQLHGKMLRISWSC----RDPDARKSGV-----ANLFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ R K+ L + NL S L+E+F+
Sbjct: 451 KQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKA 510
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV + GK KG+ F++F + E A A+ + N + + I + + R
Sbjct: 511 TFI---KVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL-ELQGSNSRSQ 566
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
PS LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +D
Sbjct: 567 PS-----KTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEED 619
Query: 244 ARRALEAM-NGSVIGSKV 260
A+ A EAM +G + G+KV
Sbjct: 620 AKAAKEAMEDGEIDGNKV 637
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 131/281 (46%), Gaps = 49/281 (17%)
Query: 92 PDARKSGVA--------NLFVKNLI--ESIDNVR--LQEMF-QNFGNIISCKVATSEDGK 138
P+A+K V NLF+ NL +S++ ++ + E+F +N ++ + T+
Sbjct: 293 PEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVRTGTNWK-- 350
Query: 139 SKGHGFVQFETEESANAAIENLNGTTVGDKRIYV----GRFIKKSDRVLPSPAAKYTNLF 194
G+V FE+ E A+E L G V I + GR KK AA+ L
Sbjct: 351 ---FGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVR------AAR--TLL 398
Query: 195 MKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
KNL ++TE+ L E F +I L+++D G S+G ++ F + DA + LE G+
Sbjct: 399 AKNLSFNITEDELKEVFEDAMEI--RLVSQD--GKSKGIAYIEFKSEADAEKNLEEKQGA 454
Query: 255 VIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN--VYVKNIDDDVTDEELKA 312
I + + +K +R++ R + + G + + + N+ T E L+
Sbjct: 455 EIDGRSVSLYYTGEKGQRQE---------RTGKTSTWSGESKTLVLSNLSYSATKETLEE 505
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + I KV ++ G KG+ F+ F+S E+A +A+N+
Sbjct: 506 VFEKATFI---KVPQNPHGKPKGYAFIEFASFEDAKEALNS 543
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NLF+ NL+ + + L S+ L + GT+ FG+V+F++ +D +ALE
Sbjct: 310 NLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVRTGTNWKFGYVDFESAEDLEKALELT 369
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
V G+++ ++ + + + +K R + + KN+ ++T++ELK
Sbjct: 370 GLKVFGNEI-------------KLEKPKGRDSKKVRAAR----TLLAKNLSFNITEDELK 412
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F I + + G +KG ++ F S +A K + G + + + +
Sbjct: 413 EVFEDAMEIR----LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 468
Query: 372 KEDRQ 376
K RQ
Sbjct: 469 KGQRQ 473
>gi|296484904|tpg|DAA27019.1| TPA: ELAV-like 2-like [Bos taurus]
Length = 620
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 135/297 (45%), Gaps = 50/297 (16%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L V L ++T EL F + S ++ +D TG+S YG+VN++ P DA +AI
Sbjct: 314 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 373
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N +L K +++S++ P + ANL+V L +++ L+++F +G II+ ++
Sbjct: 374 LNGLRLQTKTIKVSYA--RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 431
Query: 133 TSE-DGKSKGHGFVQFETEESANAAIENLNG---------TTV----------------- 165
+ G S+G GF++F+ A AI+ LNG TV
Sbjct: 432 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ 491
Query: 166 ---GDKRIYVGRFIKKSDRV-----------------LPSPAAKYTNLFMKNLDSDVTEE 205
R Y G +++ R +P +F+ NL D E
Sbjct: 492 LYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADES 551
Query: 206 HLVEKFSKFGKIASLLIARDEN-GTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
L + F FG + ++ + RD N +GFGFV N D+A A+ ++NG +G +VL
Sbjct: 552 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 608
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 141/309 (45%), Gaps = 43/309 (13%)
Query: 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159
NL V L +++ L+ +F + G I SCK+ + G+S G+GFV + + A AI
Sbjct: 314 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 373
Query: 160 LNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS 219
LNG + K I V + + S S + + NL++ L +T++ L + FS++G+I +
Sbjct: 374 LNGLRLQTKTIKVS-YARPS-----SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 427
Query: 220 LLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNG-----SVIGSKVLYAARAQKKAER- 272
I D+ G SRG GF+ FD +A A++ +NG + V +A +K +
Sbjct: 428 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 487
Query: 273 ------------------EQILRHQFEEKRKERILKYKGSNV----------YVKNIDDD 304
+Q R +F + + G N+ +V N+ D
Sbjct: 488 ILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPD 547
Query: 305 VTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ L F G +T+ KV+RD KGFGFV ++ +EA+ A+ + +GY L +
Sbjct: 548 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 607
Query: 364 LYVAIAQRK 372
L + K
Sbjct: 608 LQXSFKTNK 616
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 20/168 (11%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALE 249
TNL + L ++T+E L F G+I S + RD+ G S G+GFVN+ +P DA +A+
Sbjct: 313 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 372
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG + +K + + A+ + + +N+YV + +T +E
Sbjct: 373 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 414
Query: 310 LKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHG 356
L+ FSQ G I +++++ D+ GI++G GF+ F EA +A+ +G
Sbjct: 415 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 462
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVN 352
+N+ V + ++T EELK+ F G I S K++RD+ G + G+GFV + P++A KA+N
Sbjct: 313 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 372
Query: 353 TFHGYMLHRKPLYVAIAQ 370
T +G L K + V+ A+
Sbjct: 373 TLNGLRLQTKTIKVSYAR 390
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
+P T ++V +L PD + L+ F F ++ +V+V +D T + +G+V +
Sbjct: 529 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 588
Query: 64 HDAIRAIEVKNHTQLHGKMLRISW 87
+A AI N +L ++L+ S+
Sbjct: 589 DEAAMAIASLNGYRLGDRVLQXSF 612
>gi|74177681|dbj|BAE38940.1| unnamed protein product [Mus musculus]
Length = 707
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 171/356 (48%), Gaps = 52/356 (14%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
TTP +L++G+L+P+ + EL A SE + + V D TG + +GYV+F S D +
Sbjct: 306 TTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLEK 364
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVA-NLFVKNLIESIDNVRLQEMFQNFGNII 127
A+E+ ++ G +++ + D++K A L KNL +I L+E+F++ I
Sbjct: 365 ALEL-TGLKVFGNEIKLE-KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAMEIR 422
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI---YVGRFIKKSDRV-- 182
S+DGKSKG +++F++E A +E G + + + Y G ++ +R
Sbjct: 423 LV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGK 478
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
+ + + L + NL T+E L E F K + + ++ +G +G+ F+ F + +
Sbjct: 479 TSTWSGESKTLVLSNLSYSATKETLEEVFEK---ATFIKVPQNPHGKPKGYAFIEFASFE 535
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN------- 295
DA+ AL + N I + + L+ +GSN
Sbjct: 536 DAKEALNSCNKMEIEGRTIR--------------------------LELQGSNSRSQPSK 569
Query: 296 -VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
++VK + +D T+E LK F G++ + V E G +KGFGFV F+S E+A A
Sbjct: 570 TLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 623
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 126/258 (48%), Gaps = 26/258 (10%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
+L +L ++T+ EL + F + +R+ S G+S Y+ F S DA + +E
Sbjct: 396 TLLAKNLSFNITEDELKEVFED---AMEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEE 450
Query: 73 KNHTQLHGKMLRISWSC----RDPDARKSGV-----ANLFVKNLIESIDNVRLQEMFQNF 123
K ++ G+ + + ++ R K+ L + NL S L+E+F+
Sbjct: 451 KQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKA 510
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL 183
I KV + GK KG+ F++F + E A A+ + N + + I + + R
Sbjct: 511 TFI---KVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL-ELQGSNSRSQ 566
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
PS LF+K L D TEE L E F G + + ++ E G+S+GFGFV+F++ +D
Sbjct: 567 PS-----KTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEED 619
Query: 244 ARRALEAM-NGSVIGSKV 260
A+ A EAM +G + G+KV
Sbjct: 620 AKAAKEAMEDGEIDGNKV 637
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 132/281 (46%), Gaps = 49/281 (17%)
Query: 92 PDARKSGVA--------NLFVKNLI--ESIDNVR--LQEMF-QNFGNIISCKVATSEDGK 138
P+A+K V NLF+ NL +S++ ++ + E+F +N ++ + T+
Sbjct: 293 PEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVRTGTN---- 348
Query: 139 SKGHGFVQFETEESANAAIENLNGTTVGDKRIYV----GRFIKKSDRVLPSPAAKYTNLF 194
+ G+V FE+ E A+E L G V I + GR KK AA+ L
Sbjct: 349 -RKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVR------AAR--TLL 398
Query: 195 MKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGS 254
KNL ++TE+ L E F +I L+++D G S+G ++ F + DA + LE G+
Sbjct: 399 AKNLSFNITEDELKEVFEDAMEI--RLVSQD--GKSKGIAYIEFKSEADAEKNLEEKQGA 454
Query: 255 VIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN--VYVKNIDDDVTDEELKA 312
I + + +K +R++ R + + G + + + N+ T E L+
Sbjct: 455 EIDGRSVSLYYTGEKGQRQE---------RTGKTSTWSGESKTLVLSNLSYSATKETLEE 505
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353
F + I KV ++ G KG+ F+ F+S E+A +A+N+
Sbjct: 506 VFEKATFI---KVPQNPHGKPKGYAFIEFASFEDAKEALNS 543
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 21/185 (11%)
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NLF+ NL+ + + L S+ L + GT+R FG+V+F++ +D +ALE
Sbjct: 310 NLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELT 369
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
V G+++ ++ + + + +K R + + KN+ ++T++ELK
Sbjct: 370 GLKVFGNEI-------------KLEKPKGRDSKKVRAAR----TLLAKNLSFNITEDELK 412
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F I + + G +KG ++ F S +A K + G + + + +
Sbjct: 413 EVFEDAMEIR----LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 468
Query: 372 KEDRQ 376
K RQ
Sbjct: 469 KGQRQ 473
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,999,709,662
Number of Sequences: 23463169
Number of extensions: 437170003
Number of successful extensions: 1403331
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13537
Number of HSP's successfully gapped in prelim test: 13636
Number of HSP's that attempted gapping in prelim test: 1232438
Number of HSP's gapped (non-prelim): 112763
length of query: 629
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 480
effective length of database: 8,863,183,186
effective search space: 4254327929280
effective search space used: 4254327929280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)