BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043470
(629 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 627 bits (1617), Expect = e-179, Method: Compositional matrix adjust.
Identities = 343/620 (55%), Positives = 433/620 (69%), Gaps = 43/620 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHP VT+G L+DAF+EFKSL SVR+CKD+++GRS CYGY NFLS DA AIE
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
KN++ L+GKM+R+ WS R PDAR++GV N+FVKNL ES+ N LQ+MF+ FGNI+SCKV
Sbjct: 84 KKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKV 143
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT 191
AT EDGKS+G+GFVQFE E++A+AAI+ LN T V DK IYVG+F+KK+DRV P KYT
Sbjct: 144 ATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRV--KPEEKYT 201
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
NL+MKNLD+DV+E+ L EKF++FGKI SL IA+DEN RG+ FVNFDNP+DARRA E +
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
NG+ GSK LY RAQKKAEREQ+LR QF+EK +E+ + K SN+YVKN++ VT+EEL+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
HFSQCGTITS K+M DEKG +KGFGFVCFS+PEEA AV TFHG M H KPLYVAIAQ+
Sbjct: 322 KHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQK 381
Query: 372 KEDRQAHLQLQYAQHM-AGIEGSSANVIPSGYPSLYYT-TPPGIVSQVPPRPGLMYQPLG 429
KEDR+ LQ+Q+ + A SSA+V P Y LYYT T PG+V Q P LM++
Sbjct: 382 KEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTHPGMVYQSYP---LMWKSAN 438
Query: 430 LRTGWRANGFVPPTRPAFQVSPLPVN-PKHNRQNR-GRMNGNMLPQVGAHYMQQSSQSAA 487
+ G P A P+ N P NRQNR G+++ N + V Y QS+Q
Sbjct: 439 MI------GSSYPNSEAVTYPPMVANAPSKNRQNRIGKLDRNAVSYVPNVY--QSTQMLP 490
Query: 488 SSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQ 547
S+D S QQ GR +E+ K + R+ + + GM
Sbjct: 491 LSRDFSKQQHSRTY-----GRGKEMKK------------SIQQRQSETV-GM-------- 524
Query: 548 QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLS 607
+ Q+LGE L+PLVEK +P L KITGMLLEMD SELLLLL+SPE LAV+V+EA +VLK S
Sbjct: 525 EMQLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSS 584
Query: 608 EAKVSTQEAIHPNYLSAEVA 627
+ ++ +YL++ +A
Sbjct: 585 KTNLTAPNTHRSDYLASGIA 604
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 284/639 (44%), Positives = 391/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 284/639 (44%), Positives = 391/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust.
Identities = 283/639 (44%), Positives = 391/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust.
Identities = 283/639 (44%), Positives = 391/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 282/639 (44%), Positives = 390/639 (61%), Gaps = 53/639 (8%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPD T+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K +Y RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY----------PSLYYTTPPG 412
QRKE+RQAHL QY Q MA + VI PSGY + YY PP
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPS 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN--GN 469
++Q+ P P W A G RP FQ P + P R M +
Sbjct: 427 QIAQLRPSP-----------RWTAQG----ARPHPFQNMPGAIRPAAPRPPFSTMRPASS 471
Query: 470 MLPQVGA--HYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI--------RELNKGSGVS 519
+P+V + S+Q+ ++ + VP + + LN V+
Sbjct: 472 QVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVT 531
Query: 520 LGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMD 579
+ + V ++P + MLA+ P++QKQ+LGERL+PL++ P L KITGMLLE+D
Sbjct: 532 MQQ-PAVHVQGQEP-LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEID 589
Query: 580 NSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
NSELL +LESPESL KV+EAV VL+ +AK + Q+A++
Sbjct: 590 NSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 628
Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 157/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA+E MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F + G S KVM DE
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G L+ K +YV AQ+K +RQ L+ ++ Q
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/644 (43%), Positives = 389/644 (60%), Gaps = 65/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+GFV FET+E+A AI+ +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F K+G S+ + D+NG S+GFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 EMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIP-SGYPSLYYTT------------PPGIVSQ 416
QRKE+RQAHL QY Q MA + + + P PS Y+ PPG ++Q
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQ 428
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQ---NRGRMNGNMLP 472
+ P P W A G RP FQ P + P R + R N +P
Sbjct: 429 LRPSP-----------RWTAQG----ARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVP 473
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGG-----------------QSKYVPNGRIRE-LNK 514
+V SA ++S Q G Q KY R ++ LN
Sbjct: 474 RV---------MSAQRVANTSTQTMGPRPTTAAAAAASAVRAVPQYKYAAGVRNQQHLNT 524
Query: 515 GSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGM 574
V++ + V ++P + MLAA P++QKQ+LGERL+PL++ P L KITGM
Sbjct: 525 QPQVAMQQ-PAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 582
Query: 575 LLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
LLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+ ++
Sbjct: 583 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKVVN 626
Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 159/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + + + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGRPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN DD+ DE LK F + G S KVM D+
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G +KGFGFV F E+A KAV+ +G ++ K ++V AQ+K +RQ L+ ++ Q
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust.
Identities = 278/645 (43%), Positives = 386/645 (59%), Gaps = 69/645 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAK 189
E+G SKG+GFV FET+E+A AI+ +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L E F ++G S+ + D++G SRGFGFV+F+ +DA++A++
Sbjct: 190 FTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVD 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + K ++ RAQKK ER+ L+ +FE+ +++RI +Y+G N+YVKN+DD + DE
Sbjct: 250 DMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F+ G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFTPFGSITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIP-SGYPSLYYTT------------PPGIVSQ 416
QRKE+RQAHL QY Q MA + + + P PS Y+ PPG ++Q
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQ 428
Query: 417 VPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGA 476
+ P P W A G P +P N R + P
Sbjct: 429 LRPSP-----------RWTAQGARP-------------HPFQNMAGAIRPSAPRPPTFST 464
Query: 477 HYMQQSSQ-----SAASSKDSSNQQKG-----------------GQSKYVPNGR--IREL 512
M+ +SQ SA ++S Q G Q KY R + L
Sbjct: 465 --MRPTSQVPRVMSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNTQQHL 522
Query: 513 NKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKIT 572
N V++ + V ++P + MLAA P++QKQ+LGERL+PL++ P L KIT
Sbjct: 523 NTQPQVAMQQ-PAVHVQGQEP-LTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKIT 580
Query: 573 GMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAI 617
GMLLE+DNSELL +LESPESL KV+EAV VL+ +AK + Q+ +
Sbjct: 581 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKVV 625
Score = 162 bits (409), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 158/296 (53%), Gaps = 16/296 (5%)
Query: 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFET 149
+P A +A+L+V +L + L E F G I+S +V +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 150 EESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVE 209
A A++ +N + K + I S R + N+F+KNLD + + L +
Sbjct: 62 PADAERALDTMNFDVIKGKPVR----IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 210 KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKK 269
FS FG I S + DENG S+G+GFV+F+ + A RA++ MNG ++ + ++ R + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 270 AEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329
ERE L + +E +NVY+KN +D+ DE LK F Q G S KVM D+
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
G ++GFGFV F E+A KAV+ +G L+ K ++V AQ+K +RQ L+ ++ Q
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQ 282
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 483 bits (1243), Expect = e-135, Method: Compositional matrix adjust.
Identities = 270/615 (43%), Positives = 372/615 (60%), Gaps = 41/615 (6%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVGDL +VTD +LFDAF + ++ +VRVC+D T RS YGYVNF +P DA RAI+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N+ L+GK +R+ +S RDP R+SG N+F+KNL ESID+ L + F +FGNI+SCKVA
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVA 156
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTN 192
G+SKG+GFVQ+ EESA AIE LNG + DK++YVG F+++ +R + K+TN
Sbjct: 157 VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN 216
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+++KNL T++ L F ++GKI S ++ +D G S+GFGFVNF+N DDA RA+E++N
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G K Y RAQKK+ERE LR ++E+ KE K++ SN+YVKN+D ++DE+LK
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372
FS GT+TS+KVMRD G +KG GFV F++PEEA++A++ G M+ KPLYVAIAQRK
Sbjct: 337 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Query: 373 EDRQAHLQLQYAQ----HMAGIEGSSANVIPSGYPSL-----YYTTPPGIVSQVPPRPGL 423
EDR+ LQ Q++Q M G V P G P + Y PP + +PP+PG
Sbjct: 397 EDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAM---IPPQPGY 453
Query: 424 MYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSS 483
YQ VP RP P+P +P V +
Sbjct: 454 GYQ----------QQLVPGMRPG--GGPVP--------------SFFMPMVQPQQQRPGG 487
Query: 484 QSAASS-KDSSNQQKGGQSKYVPNGRIRELNKGSGVS--LGTFNSGGVMARKPDMLNGML 540
+ S Q Q + P GR+ +G G S + ++ G M L L
Sbjct: 488 GRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNL 547
Query: 541 AAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA 600
+ +PEQQ+ +LGE LYPLVE+ + + AK+TGMLLEMD +E+L LLESPE+L KV EA
Sbjct: 548 SNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 607
Query: 601 VQVLKLSEAKVSTQE 615
+ VL+ A +T++
Sbjct: 608 MDVLRSVAAGGATEQ 622
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 102/193 (52%), Gaps = 27/193 (13%)
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALE 249
T+L++ +LD +VT+ L + F + G + ++ + RD S G+G+VNF NP DA RA++
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 250 AMN-----GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+N G I +V+Y+ R + + N+++KN+D+
Sbjct: 96 ELNYIPLYGKPI--RVMYS-------------------HRDPSVRRSGAGNIFIKNLDES 134
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ + L FS G I S KV D G +KG+GFV +++ E A KA+ +G +L+ K +
Sbjct: 135 IDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194
Query: 365 YVAIAQRKEDRQA 377
YV R+++R +
Sbjct: 195 YVGPFLRRQERDS 207
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEAS 348
++ +++YV ++D +VTD +L F Q GT+ + +V RD + G+G+V F++P++A+
Sbjct: 32 QFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAA 91
Query: 349 KAVNTFHGYMLHRKPLYVAIAQR 371
+A+ + L+ KP+ V + R
Sbjct: 92 RAIQELNYIPLYGKPIRVMYSHR 114
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 268/619 (43%), Positives = 381/619 (61%), Gaps = 20/619 (3%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA--AK 189
E G S+G+GFV FET+E+AN AI+ +NG + D++++VG F + +R L A +
Sbjct: 131 VCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E FS FG S+ + D+ G SRGFGFVN+ N ++A++A+
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +++Y RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + D+
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLG 429
QRKE+R+A L QY Q +A + ++ S Y P + Q P R P+
Sbjct: 369 QRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLP--AMPQPPNRTFYSPNPVA 426
Query: 430 -LRTG--WRANGFVPPTR--PAFQVSPLPVNPKHNRQNRGRMN--GNMLPQVGAHYMQQS 482
+R W ++ PP PA + +P P+ N M +P+V H + +
Sbjct: 427 PVRQAPQWTSHQSRPPQYQPPAPLMRAVP--PRRMSSNISTMKQASTQVPRVAPHSQRVA 484
Query: 483 ---SQSAASSKDSSNQQKGGQSKYVPNGRIRELNK-GSGVSLGTFNSGGVMARKPDMLNG 538
+Q+A + + Y + +R + G+ L V+ + + L
Sbjct: 485 NIGTQTAGARAQVNPSIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAVLMQGQEPLTA 544
Query: 539 -MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
LA+ P++QKQ+LGERLYPL+ + P L KITGMLLE+DNSELL +LESPESL KV
Sbjct: 545 SSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKV 604
Query: 598 EEAVQVLKLSEAKVSTQEA 616
EEAV VL+ +AK ++Q++
Sbjct: 605 EEAVAVLQAHQAKENSQKS 623
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD + G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ +P+ + +QR
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQR 89
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 280/644 (43%), Positives = 377/644 (58%), Gaps = 70/644 (10%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ L++ FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
E+G SKG+ FV FET+E+A+ AIE +NG + D++++VGRF + +R L + A +
Sbjct: 131 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN +V +E L E FS+FGK S+ + RD NG S+GFGFV+++ +DA +A+E
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I K+++ RAQKK ER+ L+ +FE+ ++ERI +Y+G N+Y+KN+DD + DE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVI-------PSGY--PSL--------YYTTPPG 412
QRKE+R+AHL QY Q +AG+ AN I GY P++ YYT P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYT--PN 426
Query: 413 IVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMNGNML 471
++Q+ P P W+ G RP FQ P + RQ+ R L
Sbjct: 427 QLAQMRPNP-----------RWQQGG-----RPQGFQGMPSAI-----RQSGPRPTLRHL 465
Query: 472 PQVGAHY-----MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSG 526
G+ M AA + + Q GG V N R +
Sbjct: 466 APTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKY 525
Query: 527 GVMARKPDMLNGMLAAPS--------------------PEQQKQILGERLYPLVEKHKPD 566
R P L AP P++QKQ+LGERL+PL++ +
Sbjct: 526 ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Query: 567 LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610
L KITGMLLE+DNSELL +LESPESL KV+EAV VL+ AK
Sbjct: 586 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAK 629
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFGFVCFSSPEEA 347
Y +++YV ++ DVT+ L FS G + S +V RD I + G+ +V F P +A
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDM--ITRRSLGYAYVNFQQPADA 65
Query: 348 SKAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ KP+ + +QR
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR 89
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 269/636 (42%), Positives = 384/636 (60%), Gaps = 42/636 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY+GDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL ESIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA--AK 189
E G S+G+GFV FET E+AN AI+ +NG + D++++VG F + +R L A +
Sbjct: 131 VCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E FS FG S+ + D++G SRGFGFVN+ N ++A++A+
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +++Y RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + D+
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ F GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q +A + ++ S P+ Y+ +S +P P
Sbjct: 369 QRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYF------LSAMPQPPN------ 416
Query: 429 GLRTGWRANGFVPPTRPAFQVS-----------PLP----VNPKHNRQNRGRMN--GNML 471
RT + N V P RPA Q + P P V P+ N M +
Sbjct: 417 --RTFYSPNP-VAPVRPAPQWASHQSRPPQYQPPTPLMRAVQPRRMSSNISTMKQASTQV 473
Query: 472 PQVGAHYMQQS---SQSAASSKDSSNQQKGGQSKYVPNGRIRELNK-GSGVSLGTFNSGG 527
P+V H + + +Q+A + + Y + +R + S L
Sbjct: 474 PRVAQHSQRVANIGTQTAGARAQVNPSMMRTMPHYKYSCGVRNVQPIVSSTHLQQVMEPA 533
Query: 528 VMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLL 586
V+ + + L +LA P++QKQ+LGER+YP++ + P L KITGMLLE+DNSELL +
Sbjct: 534 VLMQGQEPLTASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHM 593
Query: 587 LESPESLAVKVEEAVQVLKLSEAKVSTQEAIHPNYL 622
LESPESL KVEEAV VL+ +AK + Q++ P+ +
Sbjct: 594 LESPESLHSKVEEAVAVLQAHQAKENAQKSAQPSLI 629
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASK 349
Y +++Y+ ++ DVT+ L FS G I S +V RD + + ++ F P +A +
Sbjct: 8 YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ++ +P+ + +QR
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQR 89
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 464 bits (1195), Expect = e-130, Method: Compositional matrix adjust.
Identities = 267/620 (43%), Positives = 376/620 (60%), Gaps = 46/620 (7%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLY GDL P VT+ LFD F ++ SVRVC+D RS Y Y+NF +P+DA RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T L + +RI S RDP R SG N+F+KNL SIDN L E F +FG I+SCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP--SPAAK 189
A G+SKG+GFVQFE EESA AAI+ LNG + DK+++VG FI++ +R +P +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL ++ E+ L + F KFG I+S ++ RD++G SR FGFVNF+ + A A+E
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG +G VLY RAQKK+ERE+ LR +FE++R R K +G+N+Y+KN+DD V DE+
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS+ G +TS+KVM + +G+++GFGFV +S+PEEA +A++ +G M+ RKPLY+A+A
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 370 QRKEDRQAHLQLQYAQ-----HMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRP-GL 423
QRKEDR+AHLQ ++Q M+G +P +Y S VP +P G
Sbjct: 408 QRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMPGPPQHMYVGQ--NGASMVPSQPIGY 465
Query: 424 MYQPL---GLRTGWRANGFV--------PPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLP 472
+QP G+R G F+ P T P N + + Q + M+ N P
Sbjct: 466 GFQPQFMPGMRPGSGPGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRN--P 523
Query: 473 QVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARK 532
G YM +S + G VP G + ++ + +K
Sbjct: 524 SPGMRYMNGASNG-----------RNGMDSSVPQG------ILPPIIPLPIDASSISHQK 566
Query: 533 PDM-----LNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLL 587
+ L LA+ SP + ++LGE+LYPLVE+H+P VAK+TGMLLEMD +E+L L+
Sbjct: 567 APLLPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLM 626
Query: 588 ESPESLAVKVEEAVQVLKLS 607
ESPE+L KV EA+ VL+LS
Sbjct: 627 ESPEALKSKVSEALDVLRLS 646
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust.
Identities = 263/614 (42%), Positives = 377/614 (61%), Gaps = 18/614 (2%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLY+GDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FG+I+SCKV
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA--AK 189
E G S+G+GFV FET+E+AN AI+ +NG + D++++VG F + +R L A +
Sbjct: 131 VCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ ++ L E FS FG S+ + D +G SRGFGFVN+ N ++A++A+
Sbjct: 190 FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVT 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + +++Y RAQK+ ER+ L+ +FE+ ++ERI +Y+G N+YVKN+DD + D+
Sbjct: 250 EMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS GTITS KVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGTITSTKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYY--TTP-PGIVSQVPPRPGLMY 425
QRKE+R+A L QY Q +A + ++ S P+ Y+ T P P + P P
Sbjct: 369 QRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPNP---V 425
Query: 426 QPLGLRTGWRANGFVPPTR--PAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQS- 482
P+ W ++ PP PA + +P H+ + + +P+V + +
Sbjct: 426 APVRPAPQWASHQSRPPQYQPPAPLMRAVPPRRMHSNISTMKQASTQVPRVPLQSQRVAN 485
Query: 483 --SQSAASSKDSSNQQKGGQSKYVPNGRIRELNK-GSGVSLGTFNSGGVMARKPDMLNGM 539
+Q+A + + Y + +R + GS L V+ + + L
Sbjct: 486 IGTQTAGARAQVNASIMRAMPHYKYSCGVRNVQPIGSSAHLQQVLEPAVLMQGQEPLTAS 545
Query: 540 LAAPSP-EQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
L A +P ++QKQILGER+YPL+ + P L KITGMLLE+DNSELL +LESPESL KVE
Sbjct: 546 LLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVE 605
Query: 599 EAVQVLKLSEAKVS 612
EAV VL+ +AK S
Sbjct: 606 EAVAVLQAHQAKES 619
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEAS 348
+Y +++Y+ ++ DVT+ L FS G I S +V RD + G+ ++ F P +A
Sbjct: 7 EYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAE 66
Query: 349 KAVNTFHGYMLHRKPLYVAIAQR 371
+A++T + ++ +P+ + +QR
Sbjct: 67 RALDTMNFEVIKGRPIRIMWSQR 89
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 268/620 (43%), Positives = 374/620 (60%), Gaps = 29/620 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLHPDVT+ L++ FS + S+RVC+D T RS Y Y+NF P DA RA++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N L G+ +RI WS RDP RKSGV N+F+KNL +SIDN L + F FGNI+SCKV
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G S+G GFV FET E+A AI +NG + D++++VG F + +R L + A +
Sbjct: 131 ACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL DV E+ L + FS+FGK+ S+ + RD +G SR FGFVNF+ ++A++A+
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG + ++LYA RAQK+ ER+ L+ +FE+ +++R+ +Y+G N+YVKN+DD + D++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G ITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+A
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPL 428
QRKE+R+A L QY Q ++ + S ++ S PS Y+ +P P QP
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYF---------LPAMP----QPP 415
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
+ + G V PT+PA + + P P R + P + Q S+Q +
Sbjct: 416 A-QAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRPPVVPRRPPAHISSVRQASTQVPRT 474
Query: 489 SKDSSNQQKGGQSKYVPN-------GRIRELNKGSGVSLGTFNSGGVMARKPD---MLNG 538
+ G P+ GR K S + T+ P +
Sbjct: 475 VPHTQRVANIGTQTTGPSGVGCCTPGRPLLPCKCSSAAHSTYRVQEPAVHIPGQEPLTAS 534
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
MLAA +QKQ++GERLYPL+ L KITGMLLE+DNSELLL+LESPESL K++
Sbjct: 535 MLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKID 594
Query: 599 EAVQVLKLSEAKVSTQEAIH 618
EAV VL+ +A + +H
Sbjct: 595 EAVAVLQAHQAMEQPKAYMH 614
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK-GFGFVCFSSPEEASK 349
Y +++YV ++ DVT+ L FS G I S +V RD G+ ++ F P +A +
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 350 AVNTFHGYMLHRKPLYVAIAQR 371
A++T + ML +P+ + +QR
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQR 89
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 273/650 (42%), Positives = 385/650 (59%), Gaps = 65/650 (10%)
Query: 5 PPTATTP-ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T + P ASLYVGDLHPDVT+ L++ FS + S+R+C+D T S+ Y YVNF
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
DA A++ N + GK +RI WS RDP RKSGV N+FVKNL +SI+N L + F
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAF 122
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SC V E+G SKG+GFV FET E+A AI+ +NG + ++++VG+F + +R
Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L + A ++ N+++KN D+ +E L + F KFG S+ + DE+G S+GFGFV+F+
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+DA++A++ MNG + K +Y RAQKK ER+ L+ FE+ +++RI +Y+ N+YVKN+
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 362 KPLYVAIAQRKEDRQAHLQLQYAQHMAGIEG-SSANVIPSGY----------PSLYYTTP 410
KPLYVA+AQRKE+RQA+L +Y Q MA + + PSGY + YY P
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY--P 418
Query: 411 PGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRP-AFQVSPLPVNPKHNRQNRGRMN-- 467
P ++++ P P W A G RP FQ P + P R M
Sbjct: 419 PSQIARLRPSP-----------RWTAQG----ARPHPFQNKPSAIRPGAPRVPFSTMRPA 463
Query: 468 GNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQS------------------KYVPNGRI 509
+ +P+V S+Q A ++S Q G + KY R
Sbjct: 464 SSQVPRV------MSTQRVA---NTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRN 514
Query: 510 RELNKGSGVSLGTFNSGGVMARKPDMLNG-MLAAPSPEQQKQILGERLYPLVEKHKPDLV 568
+ ++ + + T V + + L LA+ P++QKQ+LGERL+PL++ P L
Sbjct: 515 PQQHRNAQPQV-TMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLA 573
Query: 569 AKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQEAIH 618
KITGMLLE+DNSELL +LESPESL KV+EAV VL+ +AK +TQ+A++
Sbjct: 574 GKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAVN 623
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 263/614 (42%), Positives = 368/614 (59%), Gaps = 27/614 (4%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
+SLYVGDL P V + L D F++ + ++RVC+D T RS Y YVNF +P DA RA+E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAME 117
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ + + +RI S RDP R SG N+F+KNL SIDN L E F +FG I+SCKV
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 177
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAA--K 189
A G+SKG+GFVQFE EE+A AAI+ LNG + DK+++VG F+++ DR A
Sbjct: 178 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 237
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNL ++T++ L + F K+G I+S ++ +D++G SR FGFVNF +P+ A A+E
Sbjct: 238 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG +G VLY RAQKK++RE+ LR +FE++R R K +GSN+Y+KN+DD V DE+
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK FS+ G +TS KVM + +G+++GFGFV +S+PEEA A+ +G M+ RKPLYVA+A
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
Query: 370 QRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYP-SLYYTTPPGIVSQVPPRP------- 421
QRKE+RQAHLQ + Q S + P P S ++ PPG P P
Sbjct: 418 QRKEERQAHLQSLFTQIR-----SPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNG 472
Query: 422 -GLM-YQPLGLRTGWRANGFVPPTRPAFQ----VSPLPVNPKHNRQNR-GRMNGNMLPQV 474
GL+ QP+G G++ F+P RP + P P+ + R G G Q
Sbjct: 473 QGLVPSQPMGY--GYQVQ-FMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQ 529
Query: 475 GAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRI-RELNKGSGVSLGTFNSGGVMARKP 533
Q Q+A+ + ++ G P G I LN + S
Sbjct: 530 QFQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTI 589
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
L LA SP++ ++LG+ LYPLVE+ +P AK+TGMLLEMD +E+L LLESPE+L
Sbjct: 590 SKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEAL 649
Query: 594 AVKVEEAVQVLKLS 607
KV EA+ VL+ S
Sbjct: 650 KAKVSEALDVLRRS 663
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 47/81 (58%)
Query: 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350
+ S++YV ++D V + L F+Q + + +V RD + G+ +V F++PE+AS+A
Sbjct: 56 HPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRA 115
Query: 351 VNTFHGYMLHRKPLYVAIAQR 371
+ + + + +P+ + ++ R
Sbjct: 116 MESLNYAPIRDRPIRIMLSNR 136
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/627 (41%), Positives = 365/627 (58%), Gaps = 59/627 (9%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+ D R
Sbjct: 43 TVSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGER 102
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
A+E N++ + G+ RI WS RDP RK+G N+F+KNL +SIDN L + F FG+I+S
Sbjct: 103 ALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS 162
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSP 186
CKV T E+GKS+G FV + T E+A+AAI+ +NG + DK++YVG + K +R+ +
Sbjct: 163 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEEL 222
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
A++TN+++KN+D +VT+ + FG S+ ++RDE G S+GFGFVN++N + AR+
Sbjct: 223 RAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARK 282
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
A++ +N + K LYA RAQ K+ERE L+ EEKR E K G N+YVKN+DD+
Sbjct: 283 AVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWD 342
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
D+ L+A F GTITS+KVMRD+ G+++GFGFVC+SSP+EA+KAV+ +G M+ KPLYV
Sbjct: 343 DDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYV 402
Query: 367 AIAQRKEDRQAHLQLQYA-------QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP 419
A+AQRK+ R+ L+ Q A Q+ AG G + G P Y PG P
Sbjct: 403 ALAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYM---GQPMYGYPPMPGYGQ---P 456
Query: 420 RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL---PVNPKHNRQNRGRMNGNMLPQVGA 476
PG+ PP R P+ P P++ Q+R R N N P G
Sbjct: 457 MPGM-----------------PPVR-----GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG 494
Query: 477 --HYMQQSSQSAASSKDSSNQQKGGQSKYVP------NGRIRELNKGSGVSLGTFNSGGV 528
Y + + G + P NG + G+ G+ GG
Sbjct: 495 VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQ 554
Query: 529 MARKPD-----------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE 577
M +P + LA +P +QKQ+LGE LYPL+ + +P+L KITGMLLE
Sbjct: 555 MPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLE 614
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVL 604
MDN+ELL L+ES +L KV+EA++VL
Sbjct: 615 MDNAELLHLVESQPALQEKVDEALRVL 641
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/627 (41%), Positives = 365/627 (58%), Gaps = 59/627 (9%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVN+L+ D R
Sbjct: 43 TVSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGER 102
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128
A+E N++ + G+ RI WS RDP RK+G N+F+KNL +SIDN L + F FG+I+S
Sbjct: 103 ALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS 162
Query: 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSP 186
CKV T E+GKS+G FV + T E+A+AAI+ +NG + DK++YVG + K +R+ +
Sbjct: 163 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEEL 222
Query: 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARR 246
A++TN+++KN+D +VT+ + FG S+ ++RDE G S+GFGFVN++N + AR+
Sbjct: 223 RAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARK 282
Query: 247 ALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306
A++ +N + K LYA RAQ K+ERE L+ EEKR E K G N+YVKN+DD+
Sbjct: 283 AVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWD 342
Query: 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366
D+ L+A F GTITS+KVMRD+ G+++GFGFVC+SSP+EA+KAV+ +G M+ KPLYV
Sbjct: 343 DDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYV 402
Query: 367 AIAQRKEDRQAHLQLQYA-------QHMAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPP 419
A+AQRK+ R+ L+ Q A Q+ AG G + G P Y PG P
Sbjct: 403 ALAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYM---GQPMYGYPPMPGYGQ---P 456
Query: 420 RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL---PVNPKHNRQNRGRMNGNMLPQVGA 476
PG+ PP R P+ P P++ Q+R R N N P G
Sbjct: 457 MPGM-----------------PPVR-----GPMMGYPGAPQNMMQSRPRFNPNGQPLPGG 494
Query: 477 --HYMQQSSQSAASSKDSSNQQKGGQSKYVP------NGRIRELNKGSGVSLGTFNSGGV 528
Y + + G + P NG + G+ G+ GG
Sbjct: 495 VPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQ 554
Query: 529 MARKPD-----------MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE 577
M +P + LA +P +QKQ+LGE LYPL+ + +P+L KITGMLLE
Sbjct: 555 MPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLE 614
Query: 578 MDNSELLLLLESPESLAVKVEEAVQVL 604
MDN+ELL L+ES +L KV+EA++VL
Sbjct: 615 MDNAELLHLVESQPALQEKVDEALRVL 641
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 270/676 (39%), Positives = 367/676 (54%), Gaps = 89/676 (13%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E
Sbjct: 48 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 107
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 108 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKV 167
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR A
Sbjct: 168 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKAN 227
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KNLD +++EE + F KFG+I S ++RD+ G SRGFGFVN+ D A+ A++
Sbjct: 228 FTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MN + + LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+ DD+ DE+
Sbjct: 288 EMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEK 347
Query: 310 LKAHFSQCGTITSAKVMRDEK--------------------------------------- 330
L+ F+ GTITSAKVMRD
Sbjct: 348 LREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQ 407
Query: 331 ------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAH 378
G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+ R++
Sbjct: 408 DKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRSQ 467
Query: 379 LQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYT------TPPGIVSQVP--PRPGLMYQ 426
L+ +Q + + ++A +P Y P+++Y P G +P P+PG+M
Sbjct: 468 LEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGGLPFAPQPGMMMG 527
Query: 427 PLGLRTGWRANGFVPPTRPAFQVSP---LPVN-----PKHNRQNRGRMNGNMLPQVGAHY 478
G R G F P + + P +P N P G NG PQ+G
Sbjct: 528 VPGGRPGQYPGPF-PGQQGGRGMGPNQQIPPNFAQGIPMGAMGPGGIPNGMGYPQMG--- 583
Query: 479 MQQSSQSAASSKDSSNQQKGGQS----------KYVP-NGRIRELNKGSGVSLGTFNSGG 527
Q A + GQ VP G++R G G + G
Sbjct: 584 -QVQFGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGVPVQGQMRPGQGGRGQNAQPAAGRG 642
Query: 528 VMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLL 587
A + LAA QQKQ+LGE LYP ++ +P+L KITGMLLEMDN+ELL LL
Sbjct: 643 EEAPAAGLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLL 702
Query: 588 ESPESLAVKVEEAVQV 603
E E+L KV+EA+ V
Sbjct: 703 EDDEALRAKVDEALSV 718
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 272/685 (39%), Positives = 373/685 (54%), Gaps = 99/685 (14%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 115 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 174
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET E+A AI+++NG + DK+++VG I K DR A
Sbjct: 175 AQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKAN 234
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRAL 248
+TN+++KN+D D TEE + F KFG+I S +ARD E+G SRGFGFVNF + D+A A+
Sbjct: 235 FTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Query: 249 EAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
EA+N + LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y+KN+ DD+ DE
Sbjct: 295 EALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDE 354
Query: 309 ELKAHFSQCGTITSAKVMR-----------------------------DEKGIN------ 333
+L+ FS GTITSAKVMR DE G N
Sbjct: 355 KLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDN 414
Query: 334 ------------------KGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375
KGFGFVCFSSP+EASKAV + M+H KPLYVA+AQRK+ R
Sbjct: 415 KENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVR 474
Query: 376 QAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVP-PRPGLMYQPLGL 430
++ L+ +Q + + ++A +P + P+++Y PG + +P R G+ +Q G+
Sbjct: 475 RSQLEASIQARNTIRQQQAAAAAGMPQPFMQPAVFYG--PGQQNFIPNQRGGMPFQQPGM 532
Query: 431 ----RTGWR-----------------ANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGN 469
G R N +PP LP+ Q G NG
Sbjct: 533 VIPGMPGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIGAQGLPM----GMQGAGIPNGL 588
Query: 470 MLPQVG---AHYMQQSSQSAASSKDSSNQQ---KGGQ-SKYVP----NGRIRELNKGSGV 518
PQ+G A + + Q+ + N Q GGQ + +P GR + +G G
Sbjct: 589 NYPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGMPVQQGMGRPGQAGRGQGA 648
Query: 519 SLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEM 578
A + +L A P QQKQ+LGE +YP ++ +P+L KITGMLLEM
Sbjct: 649 PAQAVGQRDENASPNGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEM 708
Query: 579 DNSELLLLLESPESLAVKVEEAVQV 603
DN+ELL L++ +L KV+EA+ V
Sbjct: 709 DNAELLALVDDDAALKAKVDEALTV 733
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/608 (41%), Positives = 359/608 (59%), Gaps = 49/608 (8%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
TA T ASLYVG+L P VT+ LF+ F+ +AS+RVC+D+ T RS Y YVNF + D
Sbjct: 75 TAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDG 134
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+A++ N+T + G+ RI WS RDP RK G N+F+KNL +IDN L + F FG I
Sbjct: 135 EKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKI 194
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSP 186
+SCKVA E G +KG+GFV F++ ESANAAIE++NG + DK++YVG + + +R
Sbjct: 195 LSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVE 254
Query: 187 A--AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A A +TN+++KNLD+++TE+ + F +FG+I SL + +D+N RGFGFVN+ N + A
Sbjct: 255 ALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECA 314
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
++A++ +N K LY RAQKK ERE+ LR ++E+ + E++ KY+G N+++KN+ D+
Sbjct: 315 QKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDE 374
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
V DE LKA FS GTITSAK+M DE+G +KGFGFVC+++PEEA+KAV + ML KPL
Sbjct: 375 VDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPL 434
Query: 365 YVAIAQRKEDRQAHLQLQY-AQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVPPRPG 422
YVA+AQRKE R++ L+ Q A++ ++ A +G P++ Y T P
Sbjct: 435 YVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAA--AGIPAVQYGATGP----------- 481
Query: 423 LMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAH--YMQ 480
L+Y P G NG P P P+P+ P Q P G Y
Sbjct: 482 LIYGPGGYPIPAAVNGRGMPMVPGHN-GPMPMYPGMPTQ---------FPAGGPAPGYPG 531
Query: 481 QSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARK--PDMLNG 538
+++ ++ G+ +P GS S G + V A P+
Sbjct: 532 MNARGPVPAQ--------GRPMMMP---------GSVPSAGPAEAEAVPAVPGMPERFTA 574
Query: 539 M-LAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKV 597
LAA E +KQ+LGE LYP V + L KITGMLLEM NSELL LLE +L +V
Sbjct: 575 ADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERV 634
Query: 598 EEAVQVLK 605
EA+ VL+
Sbjct: 635 NEAIGVLQ 642
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 154/301 (51%), Gaps = 19/301 (6%)
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGF 144
S P A+L+V L S+ L E+F + G + S C+ A + +S G+ +
Sbjct: 68 SVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTR--RSLGYAY 125
Query: 145 VQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTE 204
V F E A++ LN T + + I S R N+F+KNLD +
Sbjct: 126 VNFHNMEDGEKALDELNYTLIKGRPCR----IMWSQRDPSLRKMGTGNVFIKNLDPAIDN 181
Query: 205 EHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264
+ L + FS FGKI S +A DE G ++G+GFV+FD+ + A A+E +NG ++ K +Y
Sbjct: 182 KALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 241
Query: 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK 324
+ ER+ K LK +NVY+KN+D ++T++E F Q G ITS
Sbjct: 242 HHVSRRERQS----------KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLS 291
Query: 325 VMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYA 384
+++D+ +GFGFV +++ E A KAV+ + K LYV AQ+K +R+ L+ +Y
Sbjct: 292 LVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYE 351
Query: 385 Q 385
Q
Sbjct: 352 Q 352
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 268/681 (39%), Positives = 368/681 (54%), Gaps = 92/681 (13%)
Query: 4 VPPTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFL 61
P T + P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+
Sbjct: 32 APATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 91
Query: 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQ 121
RA++ N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F
Sbjct: 92 DTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFA 151
Query: 122 NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 152 AFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 211
Query: 182 V--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239
A +TN+++KN+D +V +E + F KFG+I S ++RD G SRGFGFVNF
Sbjct: 212 QSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFS 271
Query: 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVK 299
+ A+ A+E MN + S+ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVK
Sbjct: 272 THESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVK 331
Query: 300 NIDDDVTDEELKAHFSQCGTITSAKVMRD---------------------EK-------- 330
N+ DDV D++L+ F GTITSAKVMRD EK
Sbjct: 332 NLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEP 391
Query: 331 ----------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+
Sbjct: 392 AAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVAL 451
Query: 369 AQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY----------------- 407
AQRK+ R++ L+ +Q ++ + ++A + Y P+++Y
Sbjct: 452 AQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIPGAQRGGMF 511
Query: 408 TTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMN 467
PG++ +P RPG P + G R G P FQ P+ Q G N
Sbjct: 512 PPQPGMMMGMPGRPGQYPGPFPGQQGGRGVGPNQQIPPNFQGLPMGA-----MQGPGIPN 566
Query: 468 GNMLPQVGAHYMQQSSQSAA--SSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNS 525
G P V + + GG+ G++R G G ++G
Sbjct: 567 GMGYPMVQGQFGGGRGRGQVPGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGP 626
Query: 526 G---GVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSE 582
GV+ + L+A P+QQKQ+LGE LYP ++ +P+L KITGMLLEMDN+E
Sbjct: 627 ETPVGVLTAQ------ALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTE 680
Query: 583 LLLLLESPESLAVKVEEAVQV 603
LL LLE E+L KV+EA+ V
Sbjct: 681 LLGLLEDDEALRAKVDEALSV 701
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust.
Identities = 260/673 (38%), Positives = 366/673 (54%), Gaps = 85/673 (12%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D +A+E
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 179
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR A
Sbjct: 180 AQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKAN 239
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN++++VT+E E F+KFG++ S +ARD+ G SRGFGFVNF + A +A++
Sbjct: 240 FTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVD 299
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG + LY RAQKK ERE+ LR +E R E+ KY+G N+Y+KN+ DDV D++
Sbjct: 300 ELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDK 359
Query: 310 LKAHFSQCGTITSAKVMRD-----------------------------------EK---- 330
L+A FS+ G ITSAKVMRD EK
Sbjct: 360 LRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDR 419
Query: 331 --GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQH 386
G +KGFGFVCFS+P++A+KAV + M+ KPLYVA+AQRK+ R++ L+ +Q
Sbjct: 420 KLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARNQ 479
Query: 387 MAGIEGSSANVIPSGY---PSLYYTTPPGIVSQ-----VP-PRPGLMYQPLGLRTGWR-- 435
+ + ++ +P Y P Y PG + VP P+ G++ G R G
Sbjct: 480 LRMQQAAAQAGMPQQYMQAPVYYAGQQPGFMPAPGGRGVPFPQGGIVPGVQGGRPGQYPY 539
Query: 436 ---ANGFVPPTR------PAFQVSP--LPVNPKHNRQNRGRMNGNM-------------L 471
G VPP + P Q P P N G++ +
Sbjct: 540 QQGGRGGVPPQQMPPMGYPINQFGPGAFPPNTPQYMAAMGQVGALGGGRGGPAGRGPQGI 599
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
P G Q + + Q GG + P G + G G S + A
Sbjct: 600 P-AGIPQGLQGGPAVPGYPPAGRPQNGG-GRGTPRGNANFMAAGRGASPIPGAPADLSAG 657
Query: 532 KPDMLNGMLAAP-SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESP 590
L LA P+ QKQI+GE L+P ++ +P L KITGMLLEMDN+EL+ L E
Sbjct: 658 S--FLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDD 715
Query: 591 ESLAVKVEEAVQV 603
+L VKV+EA+ V
Sbjct: 716 NALNVKVQEALAV 728
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 262/680 (38%), Positives = 349/680 (51%), Gaps = 104/680 (15%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P A P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 106 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 165
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 166 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 225
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
A +TN+++KNLDS++ ++ + F KFG+I S ++RD+ G SRGFGFVNF
Sbjct: 226 KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTH 285
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
+ A+ A+E MN I S+ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+
Sbjct: 286 ESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 345
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRD--------------------------------- 328
DD+ DE+L+ F GTITSAKVMRD
Sbjct: 346 TDDIDDEKLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKA 405
Query: 329 ------------------EKGINKGFG------FVCFSSPEEASKAVNTFHGYMLHRKPL 364
+K K FG FVCFSSP+EASKAV + M++ KPL
Sbjct: 406 EKAEEKPSESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPL 465
Query: 365 YVAIAQRKEDRQAHLQLQ---------------------YAQHMAGIEGSSANVIPSGYP 403
YVA+AQRK+ R++ L+ Y Q IP G
Sbjct: 466 YVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQR 525
Query: 404 SLYYTTPPGIVSQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAF-QVSPLPVN------ 455
+ + PG+V +P RPG P + G R G P F Q P+ +
Sbjct: 526 GMAFPPQPGMVMGIPGGRPGQYPGPFPGQQGGRGMGPNQQIPPNFAQGIPMGMQGPGGIP 585
Query: 456 -----PKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIR 510
P+ + GR G G Q + + GQ + GR +
Sbjct: 586 NGMGYPQMAQVQFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQGGRGQ 645
Query: 511 ELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAK 570
+G G +GGV A+ L A P QQKQ+LGE LYP ++ +P+L K
Sbjct: 646 NAAAPAGPQEGA--AGGVNAQ-------TLGAAPPAQQKQMLGEALYPKIQAQQPELAGK 696
Query: 571 ITGMLLEMDNSELLLLLESP 590
ITGMLLEMDN+ELL L P
Sbjct: 697 ITGMLLEMDNTELLSLTRKP 716
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 243/607 (40%), Positives = 347/607 (57%), Gaps = 56/607 (9%)
Query: 7 TATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPH 64
T TP +SLYVGDL P+V++ LF+ F++ ++++RVC+D+ T RS Y YVN+ +
Sbjct: 3 TNFTPISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGA 62
Query: 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFG 124
DA RA++ N+T + GK RI WS RDP RKSGV N+F+KNL + ID+ L + F FG
Sbjct: 63 DAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFG 122
Query: 125 NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLP 184
NI+SCKV T + SKG GFV +ET+ESA+ AI +NG + ++++VG F +R P
Sbjct: 123 NILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQP 182
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
+ K+TN+F KNL DV + L E ++G+I ++ I D+ G S+GFGF NF++ + A
Sbjct: 183 T-EVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAA 241
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+ +E NG + K +YA RAQKK ERE L+H FE KY+G N+Y+KNIDD
Sbjct: 242 KNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDS 294
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKG-INKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ +++L+ FSQ GTITSA VM+D+K +KGFGFVC+++P+EA++AV +G M+ KP
Sbjct: 295 IDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKP 354
Query: 364 LYVAIAQRKEDRQAHLQLQYAQHM-AGIEGSSANVIPSGYPSLYYTTP--PGIV-SQVPP 419
LYVA+AQRK+ R+A L++Q+ Q GI SG P + P P +V Q+ P
Sbjct: 355 LYVALAQRKDIRRAQLEMQHQQKFKTGIRQQMPPTYGSG-PVFFTPAPVNPQVVYQQMMP 413
Query: 420 RP-GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHY 478
RP QP+G+ G AN +P RQN R NG Q G
Sbjct: 414 RPRNWNGQPVGVPQGQYANMNYARGQP--------------RQNGPRQNGGQPRQNGPR- 458
Query: 479 MQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNG 538
D S Q +P + + + + + A L
Sbjct: 459 -----------PDVSGAQP------IP------VQQQTTLDVAQTQQAASSAESALNLQS 495
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLE-MDNSELLLLLESPESLAVKV 597
++ PS +QQ LGE LYPL+ +PDL KITGMLL+ + EL L + + LA K+
Sbjct: 496 IINLPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKI 555
Query: 598 EEAVQVL 604
EA++VL
Sbjct: 556 REALEVL 562
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 265/681 (38%), Positives = 360/681 (52%), Gaps = 100/681 (14%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ + D RA+E
Sbjct: 51 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 110
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F FGNI+SCKV
Sbjct: 111 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKV 170
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR A
Sbjct: 171 AQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKAN 230
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+D DVTEE + F +FG+I S ++RD G SRGFGFVN+ + A+ A++
Sbjct: 231 FTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVD 290
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
M+ + ++ LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+ DDV DE+
Sbjct: 291 EMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 350
Query: 310 LKAHFSQCGTITSAKVMR------------------------------------------ 327
L+ F GTITSAKVMR
Sbjct: 351 LRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESDE 410
Query: 328 ---------DEKGINKGFGF--VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQ 376
D+K + K GF VCFSSP+EASKAV + M++ KPLYVA+AQRK+ R+
Sbjct: 411 EKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 470
Query: 377 AHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY------------------TTPPGIV 414
+ L+ +Q + + ++A +P Y P+++Y PG+V
Sbjct: 471 SQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGMV 530
Query: 415 SQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ 473
+P RPG P + G R G P FQ P+ G M G
Sbjct: 531 MGIPGGRPGQYPGPFPGQQGGRGMGPNQQMPPNFQGIPM-----------GAMQGPGGIP 579
Query: 474 VGAHYMQQSSQSAASSKDSSNQQKG---GQSKYVPNGRIRELNKGSGVSLGTFNSGGV-- 528
G Y Q Q Q G GQ P + R +G G
Sbjct: 580 NGMGYPQAMGQVQFGRGGGRGQVPGMPMGQGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQ 639
Query: 529 -MARKPDMLNGMLA-----APSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSE 582
A + + G L A +P QQKQ+LGE LYP ++ +P+L KITGMLLEMDN+E
Sbjct: 640 PAAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTE 699
Query: 583 LLLLLESPESLAVKVEEAVQV 603
LL LLE ++L KV+EA+ V
Sbjct: 700 LLGLLEDDDALRAKVDEALSV 720
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 245/625 (39%), Positives = 349/625 (55%), Gaps = 54/625 (8%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
+ T ASLYVG+L+P V + LF+ FS +AS+RVC+D+ T +S Y YVNF D
Sbjct: 46 VSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDG 105
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AIE N++ + G+ RI WS RDP R++G N+F+KNL +IDN L + F FG I
Sbjct: 106 EKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKI 165
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLP 184
+SCKVAT + G SK GFV +ET E+A AAIEN+NG + D+ +YVG+ I K DR
Sbjct: 166 LSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFE 225
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A +TN++ KN+D D +EE + F +GKI S+ + +D G S+GFGFVNF+N + A
Sbjct: 226 EMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESA 285
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+A++ +N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N+++KN+DD
Sbjct: 286 VKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDT 345
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ E+L+ F G+ITSA+VM DE G +KGFGFVCFSSPEEA+KA+ + M++ KPL
Sbjct: 346 IDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPL 405
Query: 365 YVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTTPPGIVSQVPPRP 421
YVA+AQRK+ R++ L Q+Q M ++ IP + P ++Y PG PP
Sbjct: 406 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQPGF---FPPN- 461
Query: 422 GLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQ 481
R NG P P + + P + R NG +P G
Sbjct: 462 ------------GRGNGPFPGPNPQMMMPRGQIPPPQGQWPRPGPNGQPVPVYG------ 503
Query: 482 SSQSAASSKDSSNQQKGG--QSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGM 539
D +N GG Q Y PN R N+ R+ L +
Sbjct: 504 --MPPVYGGDFNNGANGGRQQRGYYPN---RNQNQ--------------KGRQQKDLAAI 544
Query: 540 LAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAV 595
+A +QQK+ILGE LYP + + +P+ KITGM+L++DN E+L LLE E
Sbjct: 545 IANAPADQQKRILGEELYPKIVSTGKAQEPEAAGKITGMMLDLDNEEILALLEDDELFNT 604
Query: 596 KVEEAVQVLKLSEAKVSTQEAIHPN 620
E+A+ + E K S++ A N
Sbjct: 605 HFEDALTAFE--EYKKSSEAATAEN 627
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 242/618 (39%), Positives = 347/618 (56%), Gaps = 60/618 (9%)
Query: 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAI 67
A ASLYVG+L+P V + LF+ FS +AS+RVC+D+ + +S Y YVN+ D
Sbjct: 63 AENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGE 122
Query: 68 RAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127
+AIE N+T + G+ RI WS RDP AR+SG N+F+KNL +IDN L + F FG I+
Sbjct: 123 KAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL 182
Query: 128 SCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPS 185
S KVAT + G+SK GFV +ETEE+A AAIE++NG + D+ +YVG+ + K DR L
Sbjct: 183 SVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEE 242
Query: 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDAR 245
A YTN+++KN+D TE+ E F+ FGKI S+ + +D G S+GFGFVNF+ + A
Sbjct: 243 MKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAA 302
Query: 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV 305
+A+E +N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N++VKN+D+ +
Sbjct: 303 KAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQI 362
Query: 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365
E+L+ F GTITS+KVM D+ G +KGFGFVCFS+PEEA+KA+ + M++ KPLY
Sbjct: 363 DSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLY 422
Query: 366 VAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQVP 418
VA+AQRK+ R++ L Q+Q M ++A +P + P ++Y PP P
Sbjct: 423 VALAQRKDVRRSQLEQQIQARNQMRMQNAAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAP 482
Query: 419 ---PRPGLMYQPLG--LRTGWRANGFVPPTRPAFQVSPLPVN--PKHNRQNRGRMNGNML 471
P P +M + G W RP P+PV P + G+ NM
Sbjct: 483 FPGPNPQMMMRGRGQPFPEQW--------PRPGPNGQPVPVYGMPPQFQDFNGQ---NMR 531
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
PQ QQ Q + Y P N+ +G G V A+
Sbjct: 532 PQQQQQQQQQQQQQQQQQRG-----------YYP-------NRPAG--------GNVPAK 565
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLL 587
L ++A E QK+ILGE LY + + +P+ KITGM+L ++N E+L LL
Sbjct: 566 D---LAALIANAPLEAQKRILGEELYQRIVATGKAQEPEAAGKITGMMLGLENQEILDLL 622
Query: 588 ESPESLAVKVEEAVQVLK 605
+ E EEA+ +
Sbjct: 623 DDEELFNNHFEEALNAFE 640
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 281 EEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINK---GFG 337
EE+ + + +++YV ++ V + L FS G + S +V RD ++K G+
Sbjct: 54 EEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRD--AVSKKSLGYA 111
Query: 338 FVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
+V + E+ KA+ + + +P + +QR
Sbjct: 112 YVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQR 145
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 239/618 (38%), Positives = 349/618 (56%), Gaps = 72/618 (11%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
A + ASLYVG+L+ V + LF+ FS ++S+RVC+D+ + +S Y YVN+ D
Sbjct: 47 VAESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDG 106
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AIE N++ + G+ RI WS RDP AR+SG N+F+KNL +IDN L + F FG I
Sbjct: 107 EKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKI 166
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLP 184
+SCKVAT + G+SK GFV +ET E+A AAIEN+NG + D+ ++VG+ I K DR
Sbjct: 167 LSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFE 226
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A +TN+++KN+D + +EE L + F+ +G I S+ + +D G S+GFGFVN++ + A
Sbjct: 227 EIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAA 286
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+A+E +N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N+++KN+DD
Sbjct: 287 VKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDT 346
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ E+L+ F GTITSA+VM DE G +KGFGFVCFSSPEEA+KA+ + M KPL
Sbjct: 347 IDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPL 406
Query: 365 YVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQV 417
YVA+AQRK+ R++ L Q+Q M ++ IP + P ++Y PP
Sbjct: 407 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQGFFPPNGRGNA 466
Query: 418 P---PRPGLMY---QPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNML 471
P P P ++ QP G W RP P+PV +
Sbjct: 467 PFPGPNPQMIMRRGQPFGGPEQW--------PRPGPNGQPVPVY-------------GIP 505
Query: 472 PQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMAR 531
PQ + + Q+ + QQ+G Y PN R NKG R
Sbjct: 506 PQAYSDFNGQNIR----------QQRG----YYPN---RNQNKG---------------R 533
Query: 532 KPDMLNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLL 587
+ L ++A+ P+QQK+ILGE LYP + + +P+ KITGM+L++DN E+L LL
Sbjct: 534 QQRDLAAIIASAPPDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALL 593
Query: 588 ESPESLAVKVEEAVQVLK 605
E E E+A+ +
Sbjct: 594 EDDELFTNHFEDALTAFE 611
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/382 (50%), Positives = 260/382 (68%), Gaps = 3/382 (0%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDL DV + LFD FS + S+RVC+D T RS Y YVNF P DA RA++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + K +RI WS RDP R+SGV N+F+KNL +IDN + + F FGNI+SCKV
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKV 121
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPAAK 189
AT E G SKG+GFV FETEE+AN +I+ +NG + K++YVG+FI K+ ++ L A
Sbjct: 122 ATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D +E L E F +GKI S + E+G S+GFGFV F+ + A A++
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 250 AMNGSVIGS-KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDE 308
A+NG +G K LY ARAQKKAER+Q L+ +FEE +++R G N+YVKN+DD + D+
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDD 301
Query: 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368
L+ FS G ITSAKVM DE+G +KGFGFVCF++ EA+ AV +G ++ KPLYVA+
Sbjct: 302 RLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVAL 361
Query: 369 AQRKEDRQAHLQLQYAQHMAGI 390
AQRKE+R+AHL QY +HM G+
Sbjct: 362 AQRKEERKAHLASQYMRHMTGM 383
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 233/616 (37%), Positives = 341/616 (55%), Gaps = 71/616 (11%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P VT+ LF+ F+ + SVRVC+D+ T RS Y YVNF + D IRA+E
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALE 105
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N++ + + RI WS RDP RK+G N+++KNL +IDN L + F FG I+SCK+
Sbjct: 106 ELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKI 165
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAK-- 189
AT E G S+G GFV +E+ ESA +AI+++NG + DK+++VG + KSDR+ K
Sbjct: 166 ATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNS 225
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+F+KNL +++TE E +KFG+ +S+ ++ ++ G GFGFV++ D A +A++
Sbjct: 226 FTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAID 285
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
++ + L+A RA+KK ER LR Q+E R E++ KY+G N+Y+KN+DD + D++
Sbjct: 286 GLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDK 345
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+A F+ GTITSAKVM DE G +KGFGFVC+SSPEEA+KAV + ++ KPLYV +A
Sbjct: 346 LRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLA 405
Query: 370 QRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY---PSLYYTTPPGIVSQVPPRPGLM 424
QRK+ R++ L Q+Q M + ++A +P Y P ++Y PG +PP G M
Sbjct: 406 QRKDVRRSQLQQQIQAKNQMRLQQQAAAGGLPGQYMGNPGVFYPGQPGF---MPPGRGGM 462
Query: 425 YQPLGLR-------TGWRANGFVP---PTRPAFQVSPLPVNPKHNRQN----RGRMNGNM 470
P G N F P P P +P P+ +Q +G M G
Sbjct: 463 --PFGANPQMMMRPPMPPQNQFPPRGVPGGPNMYGAP----PQGYQQGGFPPQGPMRGGQ 516
Query: 471 LPQVGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMA 530
P+ G Q + A KD +
Sbjct: 517 PPRSGQPGPQGQFRGAPRRKDGE------------------------------------S 540
Query: 531 RKPDMLNGMLAAPSPEQQKQILGERLYPLVEKHK-----PDLVAKITGMLLEMDNSELLL 585
R D ++ L EQ KQ++GE LYP V K + KITGMLLEM E+L
Sbjct: 541 RVADSISNALENAPEEQHKQLVGEALYPKVLAEKAIDGNAEFAGKITGMLLEMPIKEILE 600
Query: 586 LLESPESLAVKVEEAV 601
+++ E L ++ +A+
Sbjct: 601 VIDDEEGLQAQINDAI 616
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 19/298 (6%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++Y+ +L P + + L D FS F + S ++ D G S +G+V++ S A
Sbjct: 131 TGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDE-FGNSRGFGFVHYESAESAES 189
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPD------ARKSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + D +K+ N+F+KNL I +E+
Sbjct: 190 AIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNK 249
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FG S ++T+++GK G GFV ++ + A AI+ L+ T +++ GR KK +R
Sbjct: 250 FGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERA 309
Query: 183 LP----------SPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTS 230
KY NL++KNLD + ++ L +F+ G I S + DE G S
Sbjct: 310 DELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKS 369
Query: 231 RGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
+GFGFV + +P++A +A+ MN ++ K LY AQ+K R L+ Q + K + R+
Sbjct: 370 KGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQIQAKNQMRL 427
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/468 (45%), Positives = 288/468 (61%), Gaps = 20/468 (4%)
Query: 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRA 69
+ ASLYVGDL P V++ L+D FS S++S+RVC+D+ T S Y YVNF +A
Sbjct: 36 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 95
Query: 70 IEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISC 129
IE N+T + G++ RI WS RDP RK G N+F+KNL IDN L + F FG+I+S
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 130 KVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI--KKSDRVLPSPA 187
K+AT E+GKSKG GFV FE E +A AI+ LNG + + IYV + K+ D L
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETK 215
Query: 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247
A YTNL++KN++S+ T+E E F+KFG I S + +D +G +GFGFVN++ +DA +A
Sbjct: 216 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 275
Query: 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTD 307
+EA+N S + + LY RAQKK ER +L+ Q+E R E++ KY+G N++VKN+DD V D
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367
E+L+ F+ GTITSAKVMR E G +KGFGFVCFS+PEEA+KA+ + ++ KPLYVA
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Query: 368 IAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGYPSLYY-TTPPGIVSQVP 418
IAQRK+ R++ L Q++Y Q A ++A + P ++Y PP V
Sbjct: 396 IAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNG 455
Query: 419 PRPGLMYQPLGLRTGWRANGFVPPTR--PAFQVSP---LPVNPKHNRQ 461
P P M P+G G NG P R P + V P P N N Q
Sbjct: 456 PNPQQM-NPMG---GMPKNGMPPQFRNGPVYGVPPQGGFPRNANDNNQ 499
Score = 37.4 bits (85), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 546 EQQKQILGERLYPLV--EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEA 600
++Q+Q LGE+LY V + + KITGM+L++ E+ LLES E +EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEA 559
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust.
Identities = 240/629 (38%), Positives = 357/629 (56%), Gaps = 68/629 (10%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
A ASLYVG+L+P V + LF+ FS ++S+RVC+D+ + +S Y YVN+ D
Sbjct: 47 VAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDG 106
Query: 67 IRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126
+AIE N+ + G+ RI WS RDP AR+SG N+F+KNL +IDN L + F FG I
Sbjct: 107 EKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKI 166
Query: 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLP 184
+SCKVAT E G+SK GFV +ET E+A AAIEN+NG + D+ ++VG+ I K DR
Sbjct: 167 LSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFE 226
Query: 185 SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDA 244
A +TN+++KN+D + +EE + FS FGKI S+ + +D++G S+GFGFVNF++ + A
Sbjct: 227 EMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESA 286
Query: 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD 304
+A+E +N I + +Y RAQKK ER + L+ Q+E R E++ KY+G N++VKN+DD
Sbjct: 287 VKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDT 346
Query: 305 VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPL 364
+ E+L+ F GTITSAKVM DE G +KGFGFVCF++PEEA+KA+ + M++ KPL
Sbjct: 347 IDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPL 406
Query: 365 YVAIAQRKEDRQAHLQLQY-AQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQVP 418
YVA+AQRK+ R++ L+ Q A++ ++ ++A +P + P ++Y PP P
Sbjct: 407 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAAGGLPGQFIPPMFYGQQGFFPPNGRGNAP 466
Query: 419 ---PRPGLMYQPLG--LRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQ 473
P P +M + G W RP P+PV + PQ
Sbjct: 467 YPGPNPQMMMRGRGQPFPEQW--------PRPGPNGQPVPVY-------------GIPPQ 505
Query: 474 VGAHYMQQSSQSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP 533
+ + Q+ + Q +GG Y PN N+ S L
Sbjct: 506 FQQDF---NGQNMRPQQQQQQQPRGG---YYPN-----RNQTSKRDLAA----------- 543
Query: 534 DMLNGMLAAPSPEQQKQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLES 589
++++ +QQK+ILGE LYP + + +P+ KITGM+L ++N E+L LL+
Sbjct: 544 -----IISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDD 598
Query: 590 PESLAVKVEEAVQVL---KLSEAKVSTQE 615
E E+A+ K SEA + +E
Sbjct: 599 DELFNNHFEDALTAFEEYKKSEAAGNAEE 627
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust.
Identities = 219/519 (42%), Positives = 296/519 (57%), Gaps = 72/519 (13%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P+A P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 104 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 163
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 164 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 223
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
A +TN+++KN+D +VT+E + F KFG+I S ++RD+ G SRGFGFVNF
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTH 283
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
D A+ A++ MN I + LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+
Sbjct: 284 DSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 343
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEK------------------------------- 330
DDV DE+L+ FS GTITSAKVMRD
Sbjct: 344 TDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPK 403
Query: 331 --------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQ 376
G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+ R+
Sbjct: 404 ESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 463
Query: 377 AHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY------------------TTPPGIV 414
+ L+ +Q + + ++A +P Y P+++Y PG+V
Sbjct: 464 SQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGMV 523
Query: 415 SQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL 452
+P RPG P + G R G P FQ P+
Sbjct: 524 MGIPGGRPGQYPGPFPGQQGGRGMGPNQQIPPNFQGIPM 562
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/453 (44%), Positives = 277/453 (61%), Gaps = 21/453 (4%)
Query: 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P T+ ASLYVG+L P V++ L+D FS S++S+RVC+D+ T S Y YVNF
Sbjct: 30 TPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDH 89
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
+AIE N+T + GK RI WS RDP RK G N+++KNL +IDN L E F F
Sbjct: 90 EAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTF 149
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVAT E+G S+G GFV FE E A AIE ++G + D+ +YV + K DR
Sbjct: 150 GNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQS 209
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
L AK+TN+++KN+D + ++E E F K+GKI S ++ +D G RGFGFVNF++
Sbjct: 210 KLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDH 269
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
A +A++ +N + LY RAQKK ER Q L+ Q+E R E++ KY+G N++VKN+
Sbjct: 270 AAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNL 329
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361
DD + DE+LK F+ GTITSAKVMRDE G ++GFGFVCFS+PEEA+KA+ + ++
Sbjct: 330 DDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAG 389
Query: 362 KPLYVAIAQRKEDR--------QAHLQLQYAQHMAGIEGSSANVIPSGY--PSLYYTTPP 411
KPLYVAIAQRKE R QA Q+++ QH ++ +P + P +YY P
Sbjct: 390 KPLYVAIAQRKEVRRNQLAQQIQARNQMRF-QHANAAAAAAVAGLPGQFMPPPMYYGGIP 448
Query: 412 GIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTR 444
V P P + G NG +PP +
Sbjct: 449 PRVPFQGPNPQM--------AGMPKNGAMPPQQ 473
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 219/521 (42%), Positives = 297/521 (57%), Gaps = 74/521 (14%)
Query: 6 PTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP 63
P+A+ P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN+ +
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 64 HDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNF 123
D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L + F F
Sbjct: 104 ADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 163
Query: 124 GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV- 182
GNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K DR
Sbjct: 164 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 223
Query: 183 -LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241
A +TN+++KN+D +VT+E + F KFG+I S ++RD+ G SRGFGFVNF
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTH 283
Query: 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNI 301
D A+ A++ MN I + LY RAQKK ERE+ LR Q+E R E+ KY+G N+YVKN+
Sbjct: 284 DSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNL 343
Query: 302 DDDVTDEELKAHFSQCGTITSAKVMRDEK------------------------------- 330
DDV DE+L+ FS GTITSAKVMRD
Sbjct: 344 TDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEK 403
Query: 331 ----------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED 374
G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+
Sbjct: 404 PKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 463
Query: 375 RQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY------------------TTPPG 412
R++ L+ +Q + + ++A +P Y P+++Y PG
Sbjct: 464 RRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPG 523
Query: 413 IVSQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL 452
+V +P RPG P + G R G P FQ P+
Sbjct: 524 MVMGIPGGRPGQYPGPFPGQQGGRGMGPNQQIPPNFQGIPM 564
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/425 (45%), Positives = 281/425 (66%), Gaps = 10/425 (2%)
Query: 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72
SLYVG+L P VT+ LF+ FS ++AS+RVC+D+ T RS Y YVNFL+ D RA+E
Sbjct: 48 SLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 73 KNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132
N++ + + RI WS RDP R++G N+F+KNL IDN L + F FGNI+SCKVA
Sbjct: 108 LNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVA 167
Query: 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAKY 190
T+E G S G+GFV +ET E+A AAI+++NG + DK++YVG I + +R + A +
Sbjct: 168 TNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANF 226
Query: 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250
TN++ KN+D +VT++ + F+KFGKI S ++ RDE+G S+GFGFVNF++ ++A++A++
Sbjct: 227 TNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDE 286
Query: 251 MNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEEL 310
++ S + L+ ARAQKK+ERE+ LR +E + E++ K++G N+Y+KNI + DE L
Sbjct: 287 LHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERL 346
Query: 311 KAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
+ F+ G ITS K+MR G+++GFGFVC+S+PEEA+KAV+ +G ML +PLYVA+AQ
Sbjct: 347 REEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQ 406
Query: 371 RKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY--PSLYYTTP---PGIVSQVPPRPGLMY 425
RK+ R+ L+ Q Q A GY P +YY P PG + PRP Y
Sbjct: 407 RKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMYYPQPGAFPGQPGGMVPRP--RY 464
Query: 426 QPLGL 430
P G+
Sbjct: 465 APAGM 469
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 235/601 (39%), Positives = 334/601 (55%), Gaps = 47/601 (7%)
Query: 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73
LYVG+L+P V + LF+ FS ++S+RVC+D+ T +S Y YVNF D RAIE
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 74 NHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVAT 133
N++ + G+ RI WS RDP R++G N+F+KNL +IDN L + F FG I+SCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 134 SEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VLPSPAAKYT 191
E G+SK GFV +ET E+A AAIEN+NG + D+ ++VG+ + K DR A +T
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251
N+++KNL +V E F FG + S+ + D+ G SRGFGFVNF+N + A A++ M
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 252 NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELK 311
N I + LY RAQKK ER L+ +E R E++ KY+G N++VKN+DD + E+L+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 312 AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371
F GTITSA+VM D+ G +KGFGFVCFSSPEEA+KA+ + M+ KPLYVA+AQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 372 KEDRQAHL--QLQYAQHMAGIEGSSANVIPSGYPS-LYYTTPPGIVSQVPPRPGLMYQPL 428
K+ R++ L Q+Q M ++A +P + S ++Y PG + P
Sbjct: 420 KDVRRSQLEQQIQARNQMRMQNAAAAAGMPGQFMSPMFYGQQPGF-----------FPPN 468
Query: 429 GLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHYMQQSSQSAAS 488
G R G A G PP + P + R NG +P G M +
Sbjct: 469 G-RGG--AQGPFPPNPQMMMPRGGQMPPPQGQWPRAGPNGQPVPVYG---MPPVYGGEFN 522
Query: 489 SKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQ 548
+ QQ+G Y PN + GG R L +++ +QQ
Sbjct: 523 GPNGQRQQRGA---YPPNRNQK---------------GGRPQRD---LAAIISTVPVDQQ 561
Query: 549 KQILGERLYPLV----EKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604
K+ILGE LYP + + +P+ KITGM+L+++N E+L LLE E E+A+
Sbjct: 562 KRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDELFENHFEDALTAF 621
Query: 605 K 605
+
Sbjct: 622 E 622
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust.
Identities = 199/470 (42%), Positives = 289/470 (61%), Gaps = 30/470 (6%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVG+L P++T+ L+D FS ++S+RVC+D+ T S Y YVN+ +AI+
Sbjct: 50 ASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQ 109
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N+ +++G+ RI WS RDP RK G N+F+KNL +IDN L E F FG ++SCKV
Sbjct: 110 ELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKV 169
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
A E+G S+G GFV F+ E A AIE +NG + +YV + K DR+ L A
Sbjct: 170 ALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKAN 229
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN+D + T+E + FS++G+I S + +D G +GFGFVNF + + A +A+E
Sbjct: 230 FTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVE 289
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
+NG S+ LY RAQKK ER + L+ Q+E+ R E++ K++G N+++KN+DD + DE+
Sbjct: 290 ELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEK 349
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
LK F+ GTITSA+VMRD++G +KGFGFVCFSSPEEA+KA+ + ++ KPLYVAIA
Sbjct: 350 LKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIA 409
Query: 370 QRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGY-PSLYY--TTPPGIVSQVP 418
QRK+ R++ L Q+++ Q ++A +P Y P ++Y P G
Sbjct: 410 QRKDVRRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPGQYMPQMFYGVMAPRGFPG--- 466
Query: 419 PRPGLMYQPLGLRTGWRANGFVPPTR--------PAFQVSPLPVN--PKH 458
P PG M P+G G NG VPP + P +Q P P N P+H
Sbjct: 467 PNPG-MNGPMG--AGIPKNGMVPPPQQFAGRPNGPMYQGMP-PQNQFPRH 512
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 549 KQILGERLYPLVEKHKPD--LVAKITGMLLEMDNSELLLLLESPESLAVKVEEAV 601
+Q LGE+LY V D KITGM+L++ +++ LL++ E + +EA+
Sbjct: 524 RQALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDNDEQFEQQFQEAL 578
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 361 bits (927), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 193/430 (44%), Positives = 274/430 (63%), Gaps = 14/430 (3%)
Query: 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA 66
+ T ASLYVGDL P V++ L+D FS +++S+RVC+D+ T S Y YVNF + HDA
Sbjct: 30 SETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNF-NDHDA 88
Query: 67 IR-AIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+ AIE N T + GK+ RI WS RDP RK G N+F+KNL IDN L + F FGN
Sbjct: 89 AKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGN 148
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR--VL 183
I+S KVAT E GKSKG G+V FE +ESA+ AI+ LNG + + IYVG + K +R
Sbjct: 149 ILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKF 208
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDD 243
A +TN+++KN++++ T++ E +KFGK S+++ R G ++GFGFVNF N +D
Sbjct: 209 EEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHED 268
Query: 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDD 303
A + +E +N + + LY RAQKK ER+Q L+ Q+E R E++ KY+G N+++KN+DD
Sbjct: 269 AVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDD 328
Query: 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363
+ D++L+ F+ GTITSAKVM E G +KGFGFVCFS+PEEA+KA+ + ++ KP
Sbjct: 329 SIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKP 388
Query: 364 LYVAIAQRKEDRQAHL--------QLQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGI 413
LYVAIAQRK+ R++ L Q+++ Q A ++A +P + P Y PP
Sbjct: 389 LYVAIAQRKDVRRSQLAQQIQARNQMRFQQASAAAAAAAAAGMPGQFMPPMFYGVMPPRG 448
Query: 414 VSQVPPRPGL 423
V P P +
Sbjct: 449 VPFNGPNPQM 458
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 546 EQQKQILGERLYPLVEKHKPDLVA--KITGMLLEMDNSELLLLLESPESLAVKVEEA 600
++Q+Q LGE LY + D A KITGM+L++ E++ LLE+ E +EA
Sbjct: 501 QKQRQALGEELYKRIFSRTNDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEA 557
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 350 bits (898), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 206/491 (41%), Positives = 276/491 (56%), Gaps = 76/491 (15%)
Query: 6 PTATTPA--------SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGY 57
PT TT A SLYVG+L P VT+ LF+ FS +AS+RVC+D+ T RS Y Y
Sbjct: 34 PTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAY 93
Query: 58 VNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQ 117
VN+ S D +A+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L
Sbjct: 94 VNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALH 153
Query: 118 EMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIK 177
+ F FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + +K+++VG I
Sbjct: 154 DTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIP 213
Query: 178 KSDRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGF 235
K +R+ A +TN+++KN+D DVT+E E F K G I S IARD+ G SRGFGF
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGF 273
Query: 236 VNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSN 295
VN+ + A A++ +N + LY RAQKK ERE+ LR Q+E R E+ KY+G N
Sbjct: 274 VNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVN 333
Query: 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKV------------------------------ 325
+Y+KN++DDV DE+L+ F+ GTITSAKV
Sbjct: 334 LYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEA 393
Query: 326 --------------------MRDEKGI---NKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
++ EK I +KGFGFVCFS+P+EA+KAV + M+ K
Sbjct: 394 KEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGK 453
Query: 363 PLYVAIAQRKEDR--------QAHLQLQYAQHMAGIEGSSAN--VIPSGYPSLYYTTPPG 412
PLYVA+AQRK+ R QA QL+ Q G + P P +Y PPG
Sbjct: 454 PLYVALAQRKDVRKNQLEATIQARNQLRMQQQQQQQFGGIPQMFIAPGQQPMMY---PPG 510
Query: 413 IVSQVPPRPGL 423
Q+P G+
Sbjct: 511 ARGQMPFPAGM 521
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 539 MLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVE 598
+L+A +P QQKQ+LGE LYP + + +P+L KITGMLLEMDNSEL+ L +L KV+
Sbjct: 654 VLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKVD 713
Query: 599 EAVQV 603
EA+ V
Sbjct: 714 EAMSV 718
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 245/362 (67%), Gaps = 4/362 (1%)
Query: 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71
ASLYVGDLH DVT+ LF FS + S+R+C+D T RS Y YVNFL DA +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 72 VKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKV 131
N + GK +R+ WS RD R+SG+ N+F+KNL +SIDN L E F FG I+S KV
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 132 ATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--LPSPAAK 189
+ + G SKG+ FV F+ + +A+ AIE +NG + +++VGRF + DR L S A++
Sbjct: 130 MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 188
Query: 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249
+TN+++KN D+ +E L + FSK+GK S+ + D +G S+GFGFV+FD+ + A++A+E
Sbjct: 189 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 248
Query: 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEE 309
MNG I ++++ RAQKK ER+ L+ FE+ ++ERI +G +Y+KN+DD + DE+
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 308
Query: 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369
L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A+KA+ +G +L KPL +A+A
Sbjct: 309 LRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Query: 370 QR 371
QR
Sbjct: 368 QR 369
Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 152/299 (50%), Gaps = 28/299 (9%)
Query: 94 ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEES 152
A K +A+L+V +L + L F G ++S ++ + +S G+ +V F
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT------NLFMKNLDSDVTEEH 206
A A++ +N + K I R++ S Y N+F+KNLD + +
Sbjct: 64 AQKALDTMNFDIIKGKSI----------RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 113
Query: 207 LVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266
L E FS FGKI S + D+ G S+G+ FV+F N A RA+E MNG ++ ++ R
Sbjct: 114 LYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRF 172
Query: 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326
+ + +RE LR + E +NVY+KN D+ DE LK FS+ G S KVM
Sbjct: 173 KNRKDREAELRSKASE----------FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVM 222
Query: 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 385
D G +KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 223 TDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 281
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 335 bits (860), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 168/331 (50%), Positives = 222/331 (67%), Gaps = 4/331 (1%)
Query: 2 AVVPPTATTP--ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVN 59
+ P A+ P ASLYVG+L P VT+ L++ FS +AS+RVC+D+ T RS Y YVN
Sbjct: 37 STTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVN 96
Query: 60 FLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEM 119
+ + D RA+E N+T + GK RI WS RDP RK+G N+F+KNL +IDN L +
Sbjct: 97 YNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 156
Query: 120 FQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179
F FGNI+SCKVA E G SKG+GFV +ET E+AN AI+++NG + DK+++VG I K
Sbjct: 157 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 216
Query: 180 DRV--LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVN 237
DR A +TN+++KN+D DVTEE E F KFG+I S ++RD+ G SRGFGFVN
Sbjct: 217 DRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVN 276
Query: 238 FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVY 297
F + A+ A++ MN I ++ LY RAQKK ERE+ LR Q+E R E+ KY+G N+Y
Sbjct: 277 FSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLY 336
Query: 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRD 328
VKN+ DDV DE+L+ F GTITSAKVMRD
Sbjct: 337 VKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 179 bits (453), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 187/644 (29%), Positives = 293/644 (45%), Gaps = 96/644 (14%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++++ +L + + L D F+ F ++ S +V +D G S YG+V++ + A
Sbjct: 134 TGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANN 192
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDAR------KSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + D + K+ N+++KN+ + + +E+F+
Sbjct: 193 AIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEK 252
Query: 123 FGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV 182
FG I S ++ ++GKS+G GFV F T ESA AA++ +N + +++YVGR KK +R
Sbjct: 253 FGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHER- 311
Query: 183 LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPD 242
EE L +++ + A L A G + + D D
Sbjct: 312 ---------------------EEELRKQY----EAARLEKASKYQGVNLYVKNLTDDVDD 346
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
+ R L G++ +KV+ ER Q E++ KE K + +
Sbjct: 347 EKLRELFGPYGTITSAKVMR----DTNIERTQTPESDKEKENKEAT---KENEKESSEAE 399
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGI--NKGFGFVCFSSPEEASKAVNTFHGYMLH 360
EE A D+KG+ +KGFGFVCFSSP+EASKAV + M++
Sbjct: 400 KAEKTEEKPADSGDEKKEDKESKKADKKGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVN 459
Query: 361 RKPLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYY--------- 407
KPLYVA+AQRK+ R++ L+ +Q + + ++A +P Y P+++Y
Sbjct: 460 GKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIP 519
Query: 408 --------TTPPGIVSQVPP--RPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPL----- 452
PG+V P RPG P + G R G P FQ P+
Sbjct: 520 GQRGGIAFPPQPGMVMAGIPGGRPGQYPGPFPGQQGGRGMGPNQQLPPNFQGIPMGAMQG 579
Query: 453 PVN-----PKHNRQ--------NRGRMNGNMLPQVGAHYMQQSSQSAASSKDSSNQQKGG 499
PV P+ Q RG++ G +P +G M+ Q G
Sbjct: 580 PVPNGMGYPQGMAQVQFGRGAGGRGQVPG--MPNMG-QGMRGPGYGQGRGGVPVQQ---G 633
Query: 500 QSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKPDMLNGMLAAPSPEQQKQILGERLYPL 559
Q + GR + + +GG+ A+ L+A P QQKQ+LGE LYP
Sbjct: 634 QMRPGQGGRGQNAAQAPAGRPEEAVAGGLTAQ-------ALSAAPPPQQKQMLGEALYPK 686
Query: 560 VEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQV 603
++ +P+L KITGMLLEM+N+ELL LLE E+L KV+EA+ V
Sbjct: 687 IQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEALNV 730
Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 167/302 (55%), Gaps = 25/302 (8%)
Query: 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGF 144
S P+A + A+L+V L S+ L E+F + G + S C+ A + +S G+ +
Sbjct: 37 STTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR--RSLGYAY 94
Query: 145 VQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSD 201
V + A+E+LN T + K I S R PA + T N+F+KNLDS
Sbjct: 95 VNYNNTADGERALEDLNYTLIKGKPCR----IMWSQR---DPALRKTGQGNVFIKNLDSA 147
Query: 202 VTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261
+ + L + F+ FG I S +A+DE G S+G+GFV+++ + A A++ +NG ++ K +
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 262 YAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTIT 321
+ K +R+ +FEE +K +NVY+KNID DVT+EE + F + G IT
Sbjct: 208 FVGHHISKKDRQ----SKFEE------MKANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 322 SAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQL 381
SA + RD++G ++GFGFV FS+ E A AV+ + + + LYV AQ+K +R+ L+
Sbjct: 258 SATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRK 317
Query: 382 QY 383
QY
Sbjct: 318 QY 319
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 319 bits (818), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 157/326 (48%), Positives = 222/326 (68%), Gaps = 3/326 (0%)
Query: 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65
P ASLYVG+L P VT+ LF+ FS+ S+AS+RVC+D+ T RS Y YVN+ + D
Sbjct: 55 PHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTAD 114
Query: 66 AIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125
+A+E N+T + G+ RI WS RDP RK+G N+F+KNL +IDN L + F FGN
Sbjct: 115 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 174
Query: 126 IISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV--L 183
I+SCKVA E+G SKG+GFV +ET+E+A+ AI+++NG + +K++YVG I K DR
Sbjct: 175 ILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 234
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPD 242
A +TN+++KN++ +VT++ F K+G + S +ARD E G SRGFGFVNF + +
Sbjct: 235 DEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
DA +A++ +N + LY RAQKK ERE+ LR +E R+E+ KY+G N+Y+KN+D
Sbjct: 295 DASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLD 354
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRD 328
D+V DE+L+ FS+ G ITSAKVMRD
Sbjct: 355 DEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 163/291 (56%), Gaps = 26/291 (8%)
Query: 100 ANLFVKNLIESIDNVRLQEMFQNFGNIIS---CKVATSEDGKSKGHGFVQFETEESANAA 156
A+L+V L S+ L E+F G++ S C+ A + +S G+ +V + T A
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTR--RSLGYAYVNYNTTADGEKA 118
Query: 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYT---NLFMKNLDSDVTEEHLVEKFSK 213
+E LN T + + I S R PA + T N+F+KNLD + + L + F+
Sbjct: 119 LEELNYTLIKGRPCR----IMWSQR---DPALRKTGQGNVFIKNLDVAIDNKALHDTFAA 171
Query: 214 FGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE 273
FG I S +A+DENG S+G+GFV+++ + A +A++ +NG ++ K +Y K +R+
Sbjct: 172 FGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ 231
Query: 274 QILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGI 332
+F+E +K +N+YVKNI+ +VTD+E + F + G +TS+ + RD E G
Sbjct: 232 ----SKFDE------MKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGK 281
Query: 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 383
++GFGFV F+S E+ASKAV + H + LYV AQ+K +R+ L+ Y
Sbjct: 282 SRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSY 332
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 160/346 (46%), Gaps = 67/346 (19%)
Query: 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIR 68
T ++++ +L + + L D F+ F ++ S +V +D G S YG+V++ + A +
Sbjct: 146 TGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQ 204
Query: 69 AIEVKNHTQLHGKMLRISWSCRDPDAR------KSGVANLFVKNLIESIDNVRLQEMFQN 122
AI+ N L+ K + + D + K+ N++VKN+ + + + +F+
Sbjct: 205 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEK 264
Query: 123 FGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR 181
+G++ S +A E GKS+G GFV F + E A+ A++ LN + +YVGR KK +R
Sbjct: 265 YGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHER 324
Query: 182 ----------VLPSPAAKY--TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD---- 225
A+KY NL++KNLD +V +E L + FS+FG I S + RD
Sbjct: 325 EEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITE 384
Query: 226 ------------------------ENGTSR-------------------GFGFVNFDNPD 242
E S+ GFGFV F NPD
Sbjct: 385 PGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPD 444
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERI 288
DA +A+ MN ++ +K LY A AQ+K R+ L + + + R+
Sbjct: 445 DATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQARNQLRM 490
Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 18/197 (9%)
Query: 184 PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPD 242
P P A +L++ LD VTE L E FS+ G +AS+ + RD S G+ +VN++
Sbjct: 55 PHPQAS-ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTA 113
Query: 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNID 302
D +ALE +N ++I + +Q R+ LR K NV++KN+D
Sbjct: 114 DGEKALEELNYTLIKGRPCRIMWSQ----RDPALR------------KTGQGNVFIKNLD 157
Query: 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362
+ ++ L F+ G I S KV +DE G +KG+GFV + + E AS+A+ +G +L+ K
Sbjct: 158 VAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEK 217
Query: 363 PLYVAIAQRKEDRQAHL 379
+YV K+DRQ+
Sbjct: 218 KVYVGHHIPKKDRQSKF 234
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 536 LNGMLAA--PSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESL 593
L G LAA +P QQKQILGE ++P ++ P+L KITGMLLEMDN+EL+ L+E+ +L
Sbjct: 666 LQGQLAAVADNPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGAL 725
Query: 594 AVKVEEAVQV 603
KV+EA+ V
Sbjct: 726 RSKVDEALAV 735
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKNI DD+ DE+LK F + G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKNI DD+ DE+LK F + G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKNI DD+ DE+LK F + G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKNI DD+ DE+LK F + G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 223/358 (62%), Gaps = 5/358 (1%)
Query: 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75
VGDL PDVT+ L+ F L R+C+D T YGYVNF P DA A+ N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 76 TQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135
++GK R+ WS D RKSGV N+F+KNL +SIDN L +F FGNI+SCKV +
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 136 DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDR---VLPSPAAKYTN 192
+G SKG+ +V F++ +AN AI ++NG + ++++YVGRF +R V A +TN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252
+F+KN+ D+ +E L E F ++G S+ + RD +G S+GFGFV ++ + A++A+ ++
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 253 GSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312
G I KVLY RAQKK ER LR +FE R + + G +Y+KN+D+ + DE+LK
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 313 HFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370
FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 141 GHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDS 200
G+G+V F A A+ +N + K + + + DR+ S N+F+KNLD
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKSGVG---NIFIKNLDK 115
Query: 201 DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260
+ L FS FG I S + D+NG S+G+ +V+FD+ A RA+ MNG + ++
Sbjct: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
Query: 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI 320
+Y R + ER +R + + +NV+VKNI DD+ DE+LK F + G
Sbjct: 175 VYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPT 225
Query: 321 TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377
S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A
Sbjct: 226 ESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,186,895
Number of Sequences: 539616
Number of extensions: 10490812
Number of successful extensions: 36357
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 361
Number of HSP's that attempted gapping in prelim test: 29696
Number of HSP's gapped (non-prelim): 4074
length of query: 629
length of database: 191,569,459
effective HSP length: 124
effective length of query: 505
effective length of database: 124,657,075
effective search space: 62951822875
effective search space used: 62951822875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)