Query 043470
Match_columns 629
No_of_seqs 429 out of 2990
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-98 3E-103 841.2 59.0 556 12-605 1-562 (562)
2 KOG0123 Polyadenylate-binding 100.0 3.6E-63 7.8E-68 514.5 29.2 360 12-386 2-363 (369)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.8E-49 1.3E-53 429.8 35.0 349 10-372 1-480 (481)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.5E-44 1.2E-48 378.4 27.6 341 10-374 2-351 (352)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-39 2.8E-44 365.1 39.6 266 11-277 88-372 (562)
6 KOG0145 RNA-binding protein EL 100.0 5.9E-40 1.3E-44 305.7 22.7 310 11-372 41-358 (360)
7 KOG0117 Heterogeneous nuclear 100.0 2E-38 4.3E-43 316.8 29.1 285 57-378 38-337 (506)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 7E-39 1.5E-43 347.1 24.8 297 8-321 55-369 (578)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 1.1E-37 2.3E-42 337.9 30.8 282 62-375 18-310 (578)
10 TIGR01645 half-pint poly-U bin 100.0 1.2E-35 2.5E-40 322.2 27.2 170 9-178 105-284 (612)
11 KOG0127 Nucleolar protein fibr 100.0 2.7E-35 5.9E-40 300.3 28.0 344 11-354 5-516 (678)
12 KOG0148 Apoptosis-promoting RN 100.0 3.5E-36 7.5E-41 282.8 19.7 235 98-374 5-240 (321)
13 KOG0117 Heterogeneous nuclear 100.0 1.2E-35 2.5E-40 297.0 22.6 250 7-272 79-334 (506)
14 TIGR01622 SF-CC1 splicing fact 100.0 3.3E-35 7.2E-40 322.0 28.4 340 8-373 86-449 (457)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.2E-35 1.3E-39 319.3 24.4 262 99-372 2-351 (481)
16 KOG0144 RNA-binding protein CU 100.0 5E-34 1.1E-38 283.9 17.9 357 10-373 33-505 (510)
17 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1E-32 2.2E-37 306.5 27.9 255 7-268 171-501 (509)
18 KOG0148 Apoptosis-promoting RN 100.0 4.2E-33 9.1E-38 262.1 18.8 219 9-267 4-236 (321)
19 KOG0123 Polyadenylate-binding 100.0 3.5E-32 7.7E-37 282.9 23.3 256 101-384 3-258 (369)
20 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5E-32 1.1E-36 301.0 23.7 267 98-371 174-501 (509)
21 KOG0127 Nucleolar protein fibr 100.0 5.8E-32 1.3E-36 276.0 20.7 276 100-375 6-381 (678)
22 TIGR01659 sex-lethal sex-letha 100.0 1.5E-29 3.2E-34 262.1 21.1 171 186-374 103-277 (346)
23 TIGR01659 sex-lethal sex-letha 100.0 1.6E-29 3.4E-34 261.9 19.7 169 7-177 103-274 (346)
24 smart00517 PolyA C-terminal do 100.0 1.1E-30 2.3E-35 195.6 5.8 64 544-607 1-64 (64)
25 KOG0110 RNA-binding protein (R 100.0 4.4E-29 9.6E-34 263.5 19.1 329 9-374 225-695 (725)
26 TIGR01645 half-pint poly-U bin 99.9 3.7E-27 8.1E-32 256.1 17.9 178 188-372 105-284 (612)
27 KOG0144 RNA-binding protein CU 99.9 7E-27 1.5E-31 233.1 16.6 172 188-376 32-210 (510)
28 KOG0124 Polypyrimidine tract-b 99.9 1.1E-26 2.4E-31 226.4 16.8 169 12-180 114-292 (544)
29 KOG0131 Splicing factor 3b, su 99.9 2.4E-26 5.1E-31 205.0 12.0 170 9-179 7-178 (203)
30 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.3E-25 2.9E-30 237.7 20.0 172 9-180 87-351 (352)
31 PF00658 PABP: Poly-adenylate 99.9 1.2E-27 2.7E-32 186.6 3.1 70 535-604 3-72 (72)
32 KOG4212 RNA-binding protein hn 99.9 1.3E-25 2.8E-30 223.8 18.1 236 7-255 40-280 (608)
33 KOG0147 Transcriptional coacti 99.9 3.7E-26 8E-31 235.6 13.6 327 7-370 175-526 (549)
34 KOG0110 RNA-binding protein (R 99.9 1.1E-24 2.4E-29 230.5 18.7 258 8-271 382-695 (725)
35 KOG1190 Polypyrimidine tract-b 99.9 5.3E-24 1.1E-28 211.2 20.3 349 7-371 24-490 (492)
36 KOG0145 RNA-binding protein EL 99.9 1.5E-24 3.3E-29 202.9 14.1 170 187-374 38-211 (360)
37 TIGR01622 SF-CC1 splicing fact 99.9 5.7E-24 1.2E-28 233.2 20.3 178 188-372 87-266 (457)
38 KOG0146 RNA-binding protein ET 99.9 2.1E-22 4.6E-27 189.3 11.5 187 189-375 18-368 (371)
39 KOG0131 Splicing factor 3b, su 99.9 3.2E-22 7E-27 178.6 9.3 170 189-375 8-180 (203)
40 KOG0124 Polypyrimidine tract-b 99.9 3.4E-21 7.4E-26 188.2 12.0 174 190-370 113-288 (544)
41 KOG0109 RNA-binding protein LA 99.9 2.3E-21 5.1E-26 184.8 10.4 148 191-372 3-150 (346)
42 KOG0109 RNA-binding protein LA 99.8 5.2E-21 1.1E-25 182.4 10.7 149 13-180 4-152 (346)
43 KOG1456 Heterogeneous nuclear 99.8 5.8E-19 1.3E-23 173.4 25.0 342 5-361 25-474 (494)
44 KOG4211 Splicing factor hnRNP- 99.8 3.1E-19 6.8E-24 182.3 18.6 338 7-352 6-490 (510)
45 KOG4212 RNA-binding protein hn 99.8 3.6E-19 7.7E-24 178.0 11.9 247 100-370 45-292 (608)
46 KOG0146 RNA-binding protein ET 99.8 3.4E-18 7.3E-23 161.1 9.9 187 80-268 2-364 (371)
47 KOG4205 RNA-binding protein mu 99.7 3.2E-18 7E-23 172.1 7.6 174 189-376 5-180 (311)
48 KOG0147 Transcriptional coacti 99.7 1.2E-17 2.6E-22 173.0 10.2 182 186-372 175-358 (549)
49 KOG4211 Splicing factor hnRNP- 99.7 1.4E-16 3.1E-21 163.0 17.7 264 98-367 9-353 (510)
50 KOG0105 Alternative splicing f 99.7 1.5E-16 3.2E-21 142.4 12.3 150 7-165 2-175 (241)
51 KOG0120 Splicing factor U2AF, 99.7 2.8E-16 6E-21 165.5 16.3 253 8-267 172-490 (500)
52 KOG4205 RNA-binding protein mu 99.7 3.1E-17 6.8E-22 165.1 8.8 173 98-272 5-179 (311)
53 PLN03134 glycine-rich RNA-bind 99.7 2.4E-16 5.3E-21 143.3 12.2 85 9-93 32-116 (144)
54 KOG0120 Splicing factor U2AF, 99.7 2.2E-16 4.8E-21 166.2 12.6 267 99-371 175-491 (500)
55 KOG4206 Spliceosomal protein s 99.7 8.7E-16 1.9E-20 143.5 14.2 160 6-172 4-216 (221)
56 PLN03134 glycine-rich RNA-bind 99.7 1.6E-16 3.4E-21 144.5 9.1 83 290-372 31-114 (144)
57 KOG1190 Polypyrimidine tract-b 99.6 1.3E-14 2.8E-19 144.9 18.9 244 13-267 152-489 (492)
58 KOG1365 RNA-binding protein Fu 99.6 2.6E-14 5.5E-19 141.5 17.4 272 101-375 62-365 (508)
59 PF00076 RRM_1: RNA recognitio 99.6 2E-14 4.3E-19 114.2 10.4 70 296-365 1-70 (70)
60 KOG4206 Spliceosomal protein s 99.5 4.2E-14 9E-19 132.3 12.3 175 190-370 9-220 (221)
61 PF00076 RRM_1: RNA recognitio 99.5 2.9E-14 6.2E-19 113.3 9.6 70 14-84 1-70 (70)
62 KOG1548 Transcription elongati 99.5 1.9E-13 4.2E-18 134.2 15.4 179 188-369 132-349 (382)
63 KOG0121 Nuclear cap-binding pr 99.5 2.6E-14 5.7E-19 120.6 7.3 89 8-96 33-121 (153)
64 KOG1457 RNA binding protein (c 99.5 5.7E-13 1.2E-17 123.1 15.3 231 10-257 33-274 (284)
65 KOG0122 Translation initiation 99.5 7.5E-14 1.6E-18 131.0 9.3 81 11-91 189-269 (270)
66 KOG0149 Predicted RNA-binding 99.5 3.8E-14 8.3E-19 132.6 7.0 78 292-370 11-89 (247)
67 PF14259 RRM_6: RNA recognitio 99.5 2.2E-13 4.9E-18 108.3 10.3 70 296-365 1-70 (70)
68 KOG1456 Heterogeneous nuclear 99.5 7.4E-13 1.6E-17 130.8 15.5 260 98-370 30-361 (494)
69 KOG0105 Alternative splicing f 99.5 5.2E-13 1.1E-17 119.8 11.9 172 189-369 5-187 (241)
70 KOG0125 Ataxin 2-binding prote 99.5 9.6E-14 2.1E-18 135.3 7.8 82 290-372 93-174 (376)
71 PF14259 RRM_6: RNA recognitio 99.4 4.6E-13 9.9E-18 106.5 9.2 70 14-84 1-70 (70)
72 KOG1365 RNA-binding protein Fu 99.4 1.4E-12 3E-17 129.3 14.2 253 10-265 59-358 (508)
73 KOG0132 RNA polymerase II C-te 99.4 1.2E-12 2.6E-17 140.5 14.3 81 290-375 418-498 (894)
74 KOG0122 Translation initiation 99.4 4E-13 8.7E-18 126.2 9.0 83 290-372 186-269 (270)
75 COG0724 RNA-binding proteins ( 99.4 1.4E-12 3E-17 132.6 13.5 125 11-135 115-261 (306)
76 KOG0106 Alternative splicing f 99.4 1.2E-13 2.6E-18 130.8 4.4 166 191-370 2-169 (216)
77 KOG0106 Alternative splicing f 99.4 4.2E-13 9E-18 127.1 7.9 146 12-172 2-165 (216)
78 PLN03120 nucleic acid binding 99.4 9.7E-13 2.1E-17 127.9 10.1 75 293-370 4-78 (260)
79 KOG1457 RNA binding protein (c 99.4 2.8E-12 6.1E-17 118.6 12.3 170 187-359 31-273 (284)
80 KOG0107 Alternative splicing f 99.4 6.4E-13 1.4E-17 118.7 7.6 79 10-93 9-87 (195)
81 PLN03120 nucleic acid binding 99.4 1.2E-12 2.7E-17 127.2 10.0 76 10-89 3-78 (260)
82 KOG0128 RNA-binding protein SA 99.4 6E-15 1.3E-19 160.0 -6.7 321 12-371 480-814 (881)
83 KOG1548 Transcription elongati 99.4 1.3E-11 2.8E-16 121.5 15.8 168 8-179 131-353 (382)
84 KOG0107 Alternative splicing f 99.4 1.3E-12 2.9E-17 116.7 7.2 77 292-372 9-85 (195)
85 KOG4207 Predicted splicing fac 99.3 1.3E-12 2.9E-17 119.4 6.8 86 4-89 6-91 (256)
86 PLN03213 repressor of silencin 99.3 4E-12 8.7E-17 129.7 10.7 82 291-375 8-91 (759)
87 KOG4207 Predicted splicing fac 99.3 1.1E-12 2.3E-17 120.0 5.8 78 293-370 13-91 (256)
88 COG0724 RNA-binding proteins ( 99.3 4.4E-12 9.6E-17 128.9 11.1 166 190-355 115-288 (306)
89 KOG0149 Predicted RNA-binding 99.3 2.1E-12 4.5E-17 121.1 7.5 78 11-89 12-89 (247)
90 smart00362 RRM_2 RNA recogniti 99.3 8E-12 1.7E-16 98.9 9.4 72 295-367 1-72 (72)
91 KOG0126 Predicted RNA-binding 99.3 2.6E-13 5.7E-18 121.6 -0.0 79 9-87 33-111 (219)
92 KOG0114 Predicted RNA-binding 99.3 7.9E-12 1.7E-16 101.8 8.4 81 7-90 14-94 (124)
93 PLN03121 nucleic acid binding 99.3 8.1E-12 1.7E-16 119.4 9.9 76 9-88 3-78 (243)
94 KOG0130 RNA-binding protein RB 99.3 4.9E-12 1.1E-16 107.9 7.1 83 10-92 71-153 (170)
95 smart00362 RRM_2 RNA recogniti 99.3 1.5E-11 3.4E-16 97.2 9.5 71 13-85 1-71 (72)
96 PLN03121 nucleic acid binding 99.3 1.1E-11 2.5E-16 118.4 10.1 75 292-369 4-78 (243)
97 KOG0121 Nuclear cap-binding pr 99.3 7.4E-12 1.6E-16 106.0 6.8 81 291-371 34-115 (153)
98 KOG0125 Ataxin 2-binding prote 99.3 1E-11 2.3E-16 121.3 8.6 78 12-91 97-174 (376)
99 KOG0113 U1 small nuclear ribon 99.3 1.2E-11 2.5E-16 119.5 8.8 79 9-87 99-177 (335)
100 KOG0113 U1 small nuclear ribon 99.3 1.5E-11 3.3E-16 118.8 9.1 82 291-372 99-181 (335)
101 KOG4307 RNA binding protein RB 99.3 3.8E-11 8.2E-16 127.3 12.7 165 7-173 307-509 (944)
102 KOG0132 RNA polymerase II C-te 99.3 7.8E-11 1.7E-15 126.8 15.2 109 189-315 420-528 (894)
103 smart00360 RRM RNA recognition 99.3 2.4E-11 5.2E-16 95.7 8.7 70 16-85 1-70 (71)
104 smart00360 RRM RNA recognition 99.3 2.8E-11 6.1E-16 95.3 8.8 70 298-367 1-71 (71)
105 KOG0126 Predicted RNA-binding 99.2 8.6E-13 1.9E-17 118.3 -0.2 77 293-369 35-112 (219)
106 cd00590 RRM RRM (RNA recogniti 99.2 5.3E-11 1.2E-15 94.6 10.3 74 295-368 1-74 (74)
107 KOG0114 Predicted RNA-binding 99.2 6E-11 1.3E-15 96.7 9.9 83 292-376 17-99 (124)
108 KOG0108 mRNA cleavage and poly 99.2 1.3E-11 2.9E-16 129.9 8.0 81 12-92 19-99 (435)
109 KOG0111 Cyclophilin-type pepti 99.2 5.1E-12 1.1E-16 116.5 3.8 82 292-373 9-91 (298)
110 cd00590 RRM RRM (RNA recogniti 99.2 7E-11 1.5E-15 94.0 10.0 74 13-87 1-74 (74)
111 PLN03213 repressor of silencin 99.2 3.1E-11 6.8E-16 123.3 9.5 79 7-89 6-86 (759)
112 KOG4849 mRNA cleavage factor I 99.2 8.7E-10 1.9E-14 108.3 18.8 81 295-375 82-165 (498)
113 KOG0108 mRNA cleavage and poly 99.2 4.2E-11 9.1E-16 126.2 8.6 83 294-376 19-102 (435)
114 PF13893 RRM_5: RNA recognitio 99.2 9.4E-11 2E-15 88.7 8.0 56 310-369 1-56 (56)
115 smart00361 RRM_1 RNA recogniti 99.2 1.3E-10 2.9E-15 92.2 8.2 61 307-367 2-70 (70)
116 KOG0111 Cyclophilin-type pepti 99.2 3.1E-11 6.8E-16 111.3 4.9 84 8-91 7-90 (298)
117 KOG4454 RNA binding protein (R 99.1 1.5E-11 3.3E-16 113.6 2.4 157 5-174 3-159 (267)
118 KOG0130 RNA-binding protein RB 99.1 7.7E-11 1.7E-15 100.6 6.0 82 291-372 70-152 (170)
119 KOG0226 RNA-binding proteins [ 99.1 3.1E-11 6.7E-16 114.1 3.8 173 189-373 95-271 (290)
120 PF13893 RRM_5: RNA recognitio 99.1 2.1E-10 4.6E-15 86.7 7.3 56 28-88 1-56 (56)
121 KOG4660 Protein Mei2, essentia 99.1 2.6E-10 5.7E-15 119.4 8.8 150 8-169 72-241 (549)
122 smart00361 RRM_1 RNA recogniti 99.1 6.5E-10 1.4E-14 88.2 8.2 61 25-85 2-69 (70)
123 KOG0128 RNA-binding protein SA 99.0 4.6E-11 1E-15 130.2 0.4 233 9-265 569-811 (881)
124 KOG0415 Predicted peptidyl pro 99.0 4.4E-10 9.5E-15 110.7 6.7 85 7-91 235-319 (479)
125 KOG0226 RNA-binding proteins [ 99.0 1.3E-09 2.8E-14 103.3 7.0 171 100-270 97-271 (290)
126 KOG4307 RNA binding protein RB 98.9 2.4E-08 5.1E-13 106.5 14.6 248 102-351 314-611 (944)
127 KOG4208 Nucleolar RNA-binding 98.9 4.7E-09 1E-13 97.0 7.7 84 8-91 46-130 (214)
128 KOG0153 Predicted RNA-binding 98.9 4E-09 8.7E-14 104.3 7.5 76 291-371 226-302 (377)
129 KOG0129 Predicted RNA-binding 98.9 1.8E-08 4E-13 104.9 12.5 152 8-159 256-432 (520)
130 KOG4454 RNA binding protein (R 98.8 2E-09 4.3E-14 99.7 3.7 137 188-356 7-147 (267)
131 KOG0153 Predicted RNA-binding 98.8 7.7E-09 1.7E-13 102.3 8.0 80 5-90 222-302 (377)
132 KOG0415 Predicted peptidyl pro 98.8 5.9E-09 1.3E-13 102.9 6.2 85 290-374 236-321 (479)
133 KOG4208 Nucleolar RNA-binding 98.8 9E-09 2E-13 95.1 7.1 80 293-372 49-130 (214)
134 KOG4661 Hsp27-ERE-TATA-binding 98.7 1.7E-08 3.7E-13 105.1 7.0 81 290-370 402-483 (940)
135 KOG0533 RRM motif-containing p 98.6 6.5E-08 1.4E-12 94.2 7.9 80 293-372 83-162 (243)
136 KOG0112 Large RNA-binding prot 98.6 2.2E-08 4.7E-13 110.2 4.4 159 189-372 371-531 (975)
137 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.4E-07 3E-12 98.5 7.7 83 11-93 405-487 (940)
138 KOG4210 Nuclear localization s 98.6 3.5E-08 7.5E-13 99.8 3.2 176 189-373 87-265 (285)
139 KOG0129 Predicted RNA-binding 98.5 6.6E-07 1.4E-11 93.5 12.2 152 99-250 259-432 (520)
140 PF04059 RRM_2: RNA recognitio 98.5 4.8E-07 1E-11 75.5 8.9 78 12-89 2-85 (97)
141 KOG4210 Nuclear localization s 98.4 1.9E-07 4.2E-12 94.4 4.9 170 9-179 86-265 (285)
142 KOG0533 RRM motif-containing p 98.4 8E-07 1.7E-11 86.6 8.4 82 8-90 80-161 (243)
143 KOG0112 Large RNA-binding prot 98.4 1.7E-07 3.7E-12 103.3 3.4 158 7-174 368-527 (975)
144 KOG0116 RasGAP SH3 binding pro 98.4 7.1E-07 1.5E-11 93.9 7.8 80 292-372 287-367 (419)
145 KOG4209 Splicing factor RNPS1, 98.3 5.7E-07 1.2E-11 87.9 5.6 81 9-90 99-179 (231)
146 KOG0151 Predicted splicing reg 98.3 6.9E-07 1.5E-11 96.0 6.4 82 10-91 173-257 (877)
147 PF11608 Limkain-b1: Limkain b 98.3 2.6E-06 5.7E-11 67.5 7.5 70 12-91 3-77 (90)
148 KOG0116 RasGAP SH3 binding pro 98.3 1.6E-06 3.4E-11 91.4 7.1 78 11-89 288-365 (419)
149 PF04059 RRM_2: RNA recognitio 98.2 8.1E-06 1.8E-10 68.2 9.2 80 294-373 2-88 (97)
150 KOG4209 Splicing factor RNPS1, 98.2 1.9E-06 4.1E-11 84.3 6.0 82 289-371 97-179 (231)
151 KOG0151 Predicted splicing reg 98.2 1.9E-06 4.1E-11 92.7 6.3 81 290-370 171-255 (877)
152 KOG4660 Protein Mei2, essentia 98.2 9.5E-07 2.1E-11 93.1 3.1 70 292-365 74-143 (549)
153 KOG1924 RhoA GTPase effector D 98.1 1.2E-05 2.7E-10 87.4 9.4 10 150-159 209-218 (1102)
154 KOG2193 IGF-II mRNA-binding pr 98.1 1.5E-06 3.2E-11 88.2 1.9 151 12-175 2-154 (584)
155 KOG4676 Splicing factor, argin 98.0 2.2E-06 4.9E-11 86.2 2.5 196 10-257 6-214 (479)
156 PF11608 Limkain-b1: Limkain b 97.9 3.9E-05 8.4E-10 61.0 7.0 70 294-372 3-77 (90)
157 KOG1924 RhoA GTPase effector D 97.8 6.7E-05 1.5E-09 81.9 9.5 6 574-579 721-726 (1102)
158 PF08777 RRM_3: RNA binding mo 97.8 5.6E-05 1.2E-09 64.7 6.1 78 293-375 1-83 (105)
159 KOG1995 Conserved Zn-finger pr 97.7 3.5E-05 7.5E-10 77.6 5.2 87 6-92 61-155 (351)
160 KOG4676 Splicing factor, argin 97.7 4.7E-06 1E-10 83.9 -2.2 211 98-367 6-221 (479)
161 KOG4849 mRNA cleavage factor I 97.6 7.2E-05 1.6E-09 74.3 4.6 73 13-85 82-156 (498)
162 PF08777 RRM_3: RNA binding mo 97.5 0.00013 2.8E-09 62.5 5.3 60 11-76 1-60 (105)
163 KOG2193 IGF-II mRNA-binding pr 97.5 1.5E-05 3.3E-10 80.9 -1.1 155 100-269 2-157 (584)
164 KOG0943 Predicted ubiquitin-pr 97.4 5.3E-05 1.2E-09 85.4 1.7 64 547-610 2606-2671(3015)
165 KOG1995 Conserved Zn-finger pr 97.4 0.00011 2.4E-09 74.1 3.7 82 292-373 65-155 (351)
166 KOG0115 RNA-binding protein p5 97.4 0.00038 8.2E-09 67.0 6.2 89 243-356 6-94 (275)
167 KOG2314 Translation initiation 97.3 0.00083 1.8E-08 71.2 8.0 78 292-369 57-141 (698)
168 COG5175 MOT2 Transcriptional r 97.1 0.00088 1.9E-08 66.5 6.5 80 294-373 115-204 (480)
169 KOG0115 RNA-binding protein p5 97.1 0.00082 1.8E-08 64.7 5.7 88 65-161 6-93 (275)
170 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0012 2.7E-08 48.8 5.2 52 12-70 2-53 (53)
171 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0013 2.8E-08 48.6 5.1 52 294-351 2-53 (53)
172 KOG2202 U2 snRNP splicing fact 97.0 0.00029 6.3E-09 67.9 1.6 65 308-372 83-148 (260)
173 KOG1855 Predicted RNA-binding 97.0 0.00068 1.5E-08 69.7 4.2 67 10-76 230-309 (484)
174 KOG1855 Predicted RNA-binding 96.9 0.00043 9.3E-09 71.1 2.1 78 291-368 229-320 (484)
175 COG5175 MOT2 Transcriptional r 96.8 0.0025 5.5E-08 63.4 6.4 77 13-89 116-201 (480)
176 KOG1996 mRNA splicing factor [ 96.6 0.0061 1.3E-07 59.7 7.6 66 307-372 300-367 (378)
177 KOG2202 U2 snRNP splicing fact 96.6 0.00087 1.9E-08 64.7 1.7 63 26-89 83-146 (260)
178 KOG3152 TBP-binding protein, a 96.5 0.0021 4.5E-08 62.0 3.4 74 10-83 73-158 (278)
179 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.013 2.9E-07 49.3 7.8 77 292-370 5-90 (100)
180 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.012 2.7E-07 49.6 7.1 77 10-88 5-89 (100)
181 PF08952 DUF1866: Domain of un 96.4 0.015 3.2E-07 52.0 7.9 59 308-374 51-109 (146)
182 KOG3152 TBP-binding protein, a 96.4 0.0023 5E-08 61.7 2.7 71 293-363 74-157 (278)
183 KOG2416 Acinus (induces apopto 96.2 0.0074 1.6E-07 64.6 5.9 81 291-376 442-526 (718)
184 PF08952 DUF1866: Domain of un 96.2 0.014 3E-07 52.2 6.6 75 8-91 24-107 (146)
185 KOG1996 mRNA splicing factor [ 95.5 0.044 9.6E-07 53.9 7.3 64 204-267 300-365 (378)
186 KOG2314 Translation initiation 95.3 0.035 7.5E-07 59.3 6.5 74 190-263 58-137 (698)
187 PF15023 DUF4523: Protein of u 95.2 0.088 1.9E-06 46.5 7.4 76 8-91 83-162 (166)
188 PF07576 BRAP2: BRCA1-associat 94.9 0.31 6.6E-06 42.0 10.0 81 6-88 8-92 (110)
189 PF08675 RNA_bind: RNA binding 94.9 0.074 1.6E-06 42.6 5.7 58 188-252 6-63 (87)
190 KOG2591 c-Mpl binding protein, 94.9 0.055 1.2E-06 57.8 6.4 70 293-368 175-248 (684)
191 KOG2416 Acinus (induces apopto 94.6 0.03 6.6E-07 60.1 3.6 81 5-91 438-522 (718)
192 PF08675 RNA_bind: RNA binding 94.5 0.13 2.8E-06 41.3 6.2 59 8-75 6-64 (87)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 94.3 0.051 1.1E-06 51.2 4.2 71 9-79 5-81 (176)
194 PF04847 Calcipressin: Calcipr 94.1 0.14 2.9E-06 48.5 6.6 62 24-91 8-71 (184)
195 PF10309 DUF2414: Protein of u 94.1 0.28 6E-06 37.3 6.9 53 12-73 6-62 (62)
196 PF10309 DUF2414: Protein of u 93.9 0.27 5.8E-06 37.4 6.5 54 294-354 6-62 (62)
197 KOG2893 Zn finger protein [Gen 93.7 0.43 9.4E-06 45.6 9.0 15 335-349 49-63 (341)
198 PF15023 DUF4523: Protein of u 93.6 0.18 3.9E-06 44.6 5.9 74 291-371 84-161 (166)
199 KOG2068 MOT2 transcription fac 93.1 0.033 7.1E-07 56.3 0.7 79 294-372 78-163 (327)
200 PF11767 SET_assoc: Histone ly 92.6 0.56 1.2E-05 36.3 6.7 54 22-84 11-64 (66)
201 KOG4574 RNA-binding protein (c 92.6 0.072 1.6E-06 59.7 2.4 72 13-90 300-373 (1007)
202 PF07576 BRAP2: BRCA1-associat 92.0 1.1 2.5E-05 38.5 8.6 66 295-361 15-81 (110)
203 PF03880 DbpA: DbpA RNA bindin 91.5 0.68 1.5E-05 36.8 6.3 59 303-369 11-74 (74)
204 KOG2135 Proteins containing th 91.0 0.12 2.7E-06 54.2 2.0 72 294-371 373-445 (526)
205 PF04847 Calcipressin: Calcipr 90.6 0.51 1.1E-05 44.7 5.6 60 306-370 8-69 (184)
206 KOG2135 Proteins containing th 90.3 0.19 4.1E-06 52.9 2.6 77 9-92 370-447 (526)
207 PF11767 SET_assoc: Histone ly 90.2 1.2 2.7E-05 34.4 6.3 55 304-366 11-65 (66)
208 PF10567 Nab6_mRNP_bdg: RNA-re 90.1 6.4 0.00014 39.4 12.8 183 189-372 14-232 (309)
209 PF10567 Nab6_mRNP_bdg: RNA-re 90.0 6.2 0.00013 39.5 12.5 154 7-161 11-212 (309)
210 KOG2068 MOT2 transcription fac 89.3 0.15 3.4E-06 51.6 1.0 77 13-89 79-161 (327)
211 KOG4285 Mitotic phosphoprotein 88.7 0.9 1.9E-05 45.3 5.7 62 14-83 200-261 (350)
212 KOG4285 Mitotic phosphoprotein 87.6 1 2.2E-05 44.9 5.4 76 293-375 197-273 (350)
213 KOG2591 c-Mpl binding protein, 87.3 2.1 4.6E-05 46.2 7.9 82 153-252 150-233 (684)
214 KOG4574 RNA-binding protein (c 85.8 0.52 1.1E-05 53.1 2.6 72 296-372 301-374 (1007)
215 PF03467 Smg4_UPF3: Smg-4/UPF3 85.7 1.5 3.4E-05 41.2 5.4 79 292-370 6-96 (176)
216 KOG2893 Zn finger protein [Gen 85.6 36 0.00078 32.9 16.9 23 330-352 48-70 (341)
217 KOG0804 Cytoplasmic Zn-finger 85.1 2.7 5.8E-05 44.4 7.1 69 10-80 73-142 (493)
218 KOG2253 U1 snRNP complex, subu 84.1 0.056 1.2E-06 59.1 -5.7 72 186-265 36-107 (668)
219 KOG2253 U1 snRNP complex, subu 84.0 0.53 1.2E-05 51.8 1.6 70 292-369 39-108 (668)
220 KOG2318 Uncharacterized conser 83.8 4.1 9E-05 44.4 8.0 79 290-368 171-304 (650)
221 PF03880 DbpA: DbpA RNA bindin 80.4 5.1 0.00011 31.8 5.7 57 22-87 12-73 (74)
222 KOG0804 Cytoplasmic Zn-finger 79.0 5.7 0.00012 42.0 6.9 77 190-267 74-157 (493)
223 KOG2318 Uncharacterized conser 75.2 11 0.00024 41.2 7.9 84 7-90 170-307 (650)
224 KOG4019 Calcineurin-mediated s 72.2 2.6 5.7E-05 39.0 2.2 73 13-91 12-90 (193)
225 PF07292 NID: Nmi/IFP 35 domai 67.4 3.2 6.9E-05 34.1 1.5 66 56-121 1-74 (88)
226 PRK14548 50S ribosomal protein 67.2 21 0.00046 29.1 6.2 58 295-354 22-81 (84)
227 KOG4019 Calcineurin-mediated s 66.2 4.5 9.8E-05 37.5 2.3 73 294-371 11-89 (193)
228 PF14111 DUF4283: Domain of un 66.1 14 0.00031 33.5 5.8 115 14-134 18-140 (153)
229 PF14111 DUF4283: Domain of un 65.6 8.6 0.00019 34.9 4.2 86 139-225 54-140 (153)
230 TIGR03636 L23_arch archaeal ri 65.0 27 0.00058 28.0 6.2 58 295-354 15-74 (77)
231 KOG1295 Nonsense-mediated deca 56.9 13 0.00028 38.8 4.0 68 11-78 7-77 (376)
232 KOG4483 Uncharacterized conser 56.2 27 0.00059 36.5 6.0 59 12-77 392-450 (528)
233 KOG1923 Rac1 GTPase effector F 54.6 1.3E+02 0.0029 34.5 11.4 6 600-605 553-558 (830)
234 PF07292 NID: Nmi/IFP 35 domai 54.2 9.6 0.00021 31.3 2.1 70 143-212 1-74 (88)
235 KOG2236 Uncharacterized conser 53.6 76 0.0016 34.1 9.0 17 338-355 318-334 (483)
236 PF07530 PRE_C2HC: Associated 52.0 30 0.00065 26.9 4.5 63 26-91 2-65 (68)
237 COG5638 Uncharacterized conser 50.5 31 0.00066 36.1 5.4 131 4-168 139-286 (622)
238 PHA03378 EBNA-3B; Provisional 48.9 2.8E+02 0.006 31.6 12.5 9 294-302 539-547 (991)
239 smart00596 PRE_C2HC PRE_C2HC d 46.2 35 0.00075 26.6 3.9 62 26-90 2-64 (69)
240 KOG4672 Uncharacterized conser 46.2 82 0.0018 33.2 7.7 21 296-316 219-239 (487)
241 PF03468 XS: XS domain; Inter 42.0 33 0.00073 29.8 3.7 48 295-344 10-66 (116)
242 PTZ00191 60S ribosomal protein 39.6 94 0.002 28.1 6.2 56 295-352 83-140 (145)
243 COG5180 PBP1 Protein interacti 38.8 1.5E+02 0.0033 31.8 8.4 7 38-44 50-56 (654)
244 PF03468 XS: XS domain; Inter 38.5 37 0.00081 29.5 3.5 55 13-70 10-74 (116)
245 PF15513 DUF4651: Domain of un 37.8 70 0.0015 24.4 4.3 20 308-327 9-28 (62)
246 KOG2236 Uncharacterized conser 37.7 1.1E+02 0.0023 33.0 7.2 13 233-245 261-273 (483)
247 PF15513 DUF4651: Domain of un 36.3 68 0.0015 24.4 4.0 20 205-224 9-28 (62)
248 KOG2891 Surface glycoprotein [ 35.6 99 0.0021 30.7 6.1 34 190-223 149-194 (445)
249 TIGR02542 B_forsyth_147 Bacter 31.8 60 0.0013 27.9 3.4 43 301-344 82-129 (145)
250 COG5193 LHP1 La protein, small 31.5 25 0.00054 36.9 1.4 60 12-71 175-244 (438)
251 PRK14548 50S ribosomal protein 31.2 1.5E+02 0.0032 24.2 5.6 56 14-72 23-80 (84)
252 KOG2891 Surface glycoprotein [ 29.5 53 0.0011 32.6 3.2 36 292-327 148-195 (445)
253 KOG4213 RNA-binding protein La 27.6 42 0.0009 31.3 2.0 71 12-87 112-183 (205)
254 KOG2932 E3 ubiquitin ligase in 25.7 3.7E+02 0.0079 27.5 8.2 12 36-47 15-26 (389)
255 PF11411 DNA_ligase_IV: DNA li 25.6 51 0.0011 22.1 1.6 17 21-37 19-35 (36)
256 PF14893 PNMA: PNMA 25.6 39 0.00084 35.2 1.6 69 10-91 17-97 (331)
257 KOG4365 Uncharacterized conser 25.4 17 0.00036 38.5 -1.1 79 294-373 4-83 (572)
258 PRK10629 EnvZ/OmpR regulon mod 25.1 4.6E+02 0.0099 23.2 8.1 70 9-86 33-106 (127)
259 PF07235 DUF1427: Protein of u 24.4 30 0.00066 28.2 0.5 28 550-577 38-76 (90)
260 PRK11230 glycolate oxidase sub 22.6 2E+02 0.0043 32.0 6.6 62 308-371 204-269 (499)
261 KOG1984 Vesicle coat complex C 22.4 1.4E+03 0.029 27.3 13.1 132 387-533 28-160 (1007)
262 PF03439 Spt5-NGN: Early trans 22.1 1.4E+02 0.003 24.2 4.0 35 37-76 33-67 (84)
263 COG5178 PRP8 U5 snRNP spliceos 21.7 74 0.0016 38.1 2.9 16 578-593 221-236 (2365)
264 TIGR03636 L23_arch archaeal ri 21.3 3.1E+02 0.0067 21.9 5.6 56 13-71 15-72 (77)
265 KOG4483 Uncharacterized conser 21.1 1.6E+02 0.0035 31.0 5.0 54 294-353 392-446 (528)
266 COG5638 Uncharacterized conser 20.8 72 0.0016 33.5 2.4 42 290-331 143-189 (622)
267 cd04880 ACT_AAAH-PDT-like ACT 20.6 3.2E+02 0.007 21.0 5.8 50 25-75 13-66 (75)
268 KOG4410 5-formyltetrahydrofola 20.2 1.6E+02 0.0035 29.5 4.6 50 11-65 330-379 (396)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.5e-98 Score=841.20 Aligned_cols=556 Identities=51% Similarity=0.786 Sum_probs=438.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCCC
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD 91 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~ 91 (629)
.||||+|||+++||++|+++|+.||+|.+|+||+|..|++++|||||+|.+.++|++|++.||+..|.|++|+|+|++++
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceee
Q 043470 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIY 171 (629)
Q Consensus 92 ~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~ 171 (629)
++.+.++.++|||+||+.++++++|+++|+.||.|++|++..+.+|+++|||||+|++.++|.+|++.+||..+.++.++
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccCCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 043470 172 VGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAM 251 (629)
Q Consensus 172 v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l 251 (629)
|..+..+.++. ......+++|||+||+.++++++|+++|++||.|.++.++++.+|+++|||||+|.+.++|.+|++.+
T Consensus 161 v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 161 VGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred Eeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 98887766653 23446788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeC----CeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEee
Q 043470 252 NGSVIG----SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMR 327 (629)
Q Consensus 252 ~g~~~~----g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~ 327 (629)
++..+. ++.++|.+++++.++..++...++....+......+++|||+||++++|+++|+++|+.||.|++|+|+.
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 999999 9999999999999999888888888877777788899999999999999999999999999999999999
Q ss_pred CCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccchHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCC
Q 043470 328 DEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYY 407 (629)
Q Consensus 328 ~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~ 407 (629)
|.+|.++|||||+|.+.++|.+|+++|||+.++|++|+|.++++++.+..+++.++.+......... ...+ .++.++
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~~q~~~~~~~~~--~~~p-~~~~~~ 396 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQFMQLQPRMRQLP--MGSP-MGGAMG 396 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHHHHhhhhccCCC--CCCC-CCCccc
Confidence 9999999999999999999999999999999999999999999999999998888876432211110 0000 001110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccc-cccccccc
Q 043470 408 TTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRMNGNMLPQVGAHY-MQQSSQSA 486 (629)
Q Consensus 408 ~~ppg~~~~~pp~~~~~~~~~~~~~~~~p~~~~p~~~p~~~~~p~p~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~ 486 (629)
.|++. .+.+..++++ ++.+|+.+ ++++.|++++.| +.| .+..+ +++++.++. .++.+++
T Consensus 397 --~p~~~---~~~~~~~~~~--~p~~~~~~--~~~~~~~~~~~~--~~p----~~~~~----~~~~~~~~~~~~~~~~~- 456 (562)
T TIGR01628 397 --QPPYY---GQGPQQQFNG--QPLGWPRM--SMMPTPMGPGGP--LRP----NGLAP----MNAVRAPSRNAQNAAQK- 456 (562)
T ss_pred --CCCcc---CCCCcccCCC--CCCCCCCC--CCCCCCCCCCCC--CCC----CCCCC----CCcCCCCCccccccccc-
Confidence 01000 0000000110 00011100 000000000000 000 00000 000000000 0000000
Q ss_pred ccCCCCCCCCCCCCCcccCCCCcccCCCCCCCCCCccCCCCCCCCCC-CccccccCCCCHHHHHHHHHhhhhhhhhhcCC
Q 043470 487 ASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP-DMLNGMLAAPSPEQQKQILGERLYPLVEKHKP 565 (629)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~q~~~~ge~l~~~~~~~~~ 565 (629)
.+ ..++.|+++ .++.+ ..+..|.++ + +...+++ .+++++||+++|++||+||||+|||||++++|
T Consensus 457 --------~~-~~~~~~~p~-~~~~~-~~~~~~~~~-~--~~~~~~~~~~~~~~la~~~p~~q~~~lg~~~~~~~~~~~~ 522 (562)
T TIGR01628 457 --------PP-MQPVMYPPN-YQSLP-LSQDLPQPQ-S--TASQGGQNKKLAQVLASATPQMQKQVLGERLFPLVEAIEP 522 (562)
T ss_pred --------cc-CCCcCCCcc-ccCCC-CCccccccc-C--CccccccchhHHHHHhhCCHHHHHHHHHHHhHHHHHhhCh
Confidence 00 001222111 11100 001111110 0 1111222 47999999999999999999999999999999
Q ss_pred CCccchhhhhccCChHHHHHhcCChHHHHHHHHHHHHHHH
Q 043470 566 DLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLK 605 (629)
Q Consensus 566 ~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 605 (629)
++||||||||||||++||||||||+|+|++||+||++||+
T Consensus 523 ~~~~~~tgm~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (562)
T TIGR01628 523 ALAAKITGMLLEMDNSELLHLLESPELLKSKVDEALEVLK 562 (562)
T ss_pred hhcCcceEEEecCCHHHHHHHhcCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999995
No 2
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-63 Score=514.49 Aligned_cols=360 Identities=55% Similarity=0.890 Sum_probs=345.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCCC
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD 91 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~ 91 (629)
.+|||| +++||++|+++|+.+|+|++||||||. | |+|||||+|.+++||++||+++|+..++|++||||||++|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 589999 999999999999999999999999998 7 9999999999999999999999999999999999999999
Q ss_pred CCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceee
Q 043470 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIY 171 (629)
Q Consensus 92 ~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~ 171 (629)
++. |||+||++++|+++|+|+|+.||+|+||++.++.+| ++|| ||+|+++++|.+|++.+||+.+.+++++
T Consensus 76 ~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~ 146 (369)
T KOG0123|consen 76 PSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIY 146 (369)
T ss_pred Cce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeE
Confidence 987 999999999999999999999999999999999999 9999 9999999999999999999999999999
Q ss_pred eecccccCCCCCCC--CccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q 043470 172 VGRFIKKSDRVLPS--PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALE 249 (629)
Q Consensus 172 v~~~~~~~~~~~~~--~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~ 249 (629)
|+.+.++.+|.... ....+++++++++..+.+++.|.++|..+|.|.++.++.+..|++++|+||+|+++++|..|++
T Consensus 147 vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 147 VGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred EeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHH
Confidence 99999988875332 4467899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC
Q 043470 250 AMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE 329 (629)
Q Consensus 250 ~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~ 329 (629)
.+++..+.+..++|.+++++.++...++..+..............+|||+|++..++++.|+++|+.||+|++++|+.+.
T Consensus 227 ~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 227 TLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred hccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccchHHHHHHHHHHHHhh
Q 043470 330 KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQH 386 (629)
Q Consensus 330 ~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~~~~~~~~~~~~~~ 386 (629)
.|.++||+||+|.+.++|.+|+..+|+..+++++++|++++++..+.++++..+.++
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~~~~~~~~ 363 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARLQAVFGAR 363 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhhhhhccee
Confidence 999999999999999999999999999999999999999999999988887776554
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.8e-49 Score=429.83 Aligned_cols=349 Identities=20% Similarity=0.307 Sum_probs=280.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhc--CCceecCeeeeeec
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK--NHTQLHGKMLRISW 87 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~l--n~~~i~g~~i~I~~ 87 (629)
++++|||+|||+++||++|+++|+.||+|.+|+|+++ +|||||+|.+.++|++|++.+ ++..|.|++|+|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5789999999999999999999999999999999864 479999999999999999864 67899999999999
Q ss_pred cCCCCCcc----------cCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHH
Q 043470 88 SCRDPDAR----------KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAI 157 (629)
Q Consensus 88 s~~~~~~~----------~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai 157 (629)
+......+ .+...+|+|+||+..+|+++|+++|+.||.|.+|++..+. .+++|||+|++.++|.+|+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAK 151 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHH
Confidence 97543111 1233479999999999999999999999999999998764 2478999999999999999
Q ss_pred HHhCCCcccCc--eeeeecccc----------cC----------CCC--C--------C---------------------
Q 043470 158 ENLNGTTVGDK--RIYVGRFIK----------KS----------DRV--L--------P--------------------- 184 (629)
Q Consensus 158 ~~lng~~l~g~--~l~v~~~~~----------~~----------~~~--~--------~--------------------- 184 (629)
+.|||..+.++ .|.|.+... ++ ++. . .
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGP 231 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCC
Confidence 99999999653 455443321 10 000 0 0
Q ss_pred --------------------------------------CCccccccccccCCCC-CcCHHHHHHHhcccCCeeEEEEeeC
Q 043470 185 --------------------------------------SPAAKYTNLFMKNLDS-DVTEEHLVEKFSKFGKIASLLIARD 225 (629)
Q Consensus 185 --------------------------------------~~~~~~~~v~V~nLp~-~~t~e~L~~~F~~~G~v~~~~v~~~ 225 (629)
......++|||+||+. .+++++|+++|+.||.|.++.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 232 LAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 0011346899999998 6999999999999999999999885
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHH---Hh------hhhHHHHHHh---------
Q 043470 226 ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI---LR------HQFEEKRKER--------- 287 (629)
Q Consensus 226 ~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~---~~------~~~~~~~~~~--------- 287 (629)
.+|||||+|.+.++|..|++.||+..+.|+.|+|..+......... +. ..+...+..+
T Consensus 312 ----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~ 387 (481)
T TIGR01649 312 ----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANK 387 (481)
T ss_pred ----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccc
Confidence 3689999999999999999999999999999999987543211000 00 0010000000
Q ss_pred -hhhcccceeeeecCCCCCCHHHHHHHHhcCCC--eEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE-
Q 043470 288 -ILKYKGSNVYVKNIDDDVTDEELKAHFSQCGT--ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP- 363 (629)
Q Consensus 288 -~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~--v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~- 363 (629)
....++.+|||+|||+++|+++|+++|+.||. |++|+++...++ .+|+|||+|.+.++|.+|+..||+..|+++.
T Consensus 388 ~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~ 466 (481)
T TIGR01649 388 NNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNG 466 (481)
T ss_pred cccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCC
Confidence 01135678999999999999999999999998 899999765544 6899999999999999999999999999885
Q ss_pred -----EEEEeccch
Q 043470 364 -----LYVAIAQRK 372 (629)
Q Consensus 364 -----l~v~~a~~k 372 (629)
|+|+|++++
T Consensus 467 ~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 467 SAPYHLKVSFSTSR 480 (481)
T ss_pred CccceEEEEeccCC
Confidence 999998753
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=5.5e-44 Score=378.37 Aligned_cols=341 Identities=25% Similarity=0.382 Sum_probs=234.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
+..+|||+|||.++||++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++||+.||+..|.|++|+|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcccCc
Q 043470 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDK 168 (629)
Q Consensus 90 ~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~ 168 (629)
.... .....+|||+|||.++++++|+++|+.||.|..+++..+. ++.++|||||+|++.++|.+|++.+||..+.+.
T Consensus 82 ~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred cccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 4322 2234689999999999999999999999999999999887 788999999999999999999999999998774
Q ss_pred --eeeeecccccCCCCCCCCcc---cccc--ccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCH
Q 043470 169 --RIYVGRFIKKSDRVLPSPAA---KYTN--LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241 (629)
Q Consensus 169 --~l~v~~~~~~~~~~~~~~~~---~~~~--v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~ 241 (629)
.+.+.+.............. ...+ .....++..+.. ...+.+... ........ ..+......
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~~-~~~~~~~~~ 228 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTA-------AGIGPMHHA---AARFRPSA-GDFTAVLAH 228 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccc-------cCCCCccCc---ccccccCc-chhhhhhhh
Confidence 45555443322111000000 0000 000000000000 000000000 00000000 000000000
Q ss_pred HHHHHHHHHhCCCeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeE
Q 043470 242 DDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTIT 321 (629)
Q Consensus 242 e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~ 321 (629)
......+ .. ............... ................+.+|||+|||+++++++|+++|++||.|+
T Consensus 229 ~~~~~~~--------~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~ 297 (352)
T TIGR01661 229 QQQQHAV--------AQ--QHAAQRASPPATDGQ-TAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQ 297 (352)
T ss_pred hhhhccc--------cc--ccccccCCCcccccc-ccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeE
Confidence 0000000 00 000000000000000 000000000000123455899999999999999999999999999
Q ss_pred EEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccchHH
Q 043470 322 SAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED 374 (629)
Q Consensus 322 ~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~~ 374 (629)
+|+|++|. +|.+||||||+|.+.++|.+|+..|||..|+||.|+|.|+..|..
T Consensus 298 ~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 298 NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999997 899999999999999999999999999999999999999987754
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.3e-39 Score=365.08 Aligned_cols=266 Identities=39% Similarity=0.653 Sum_probs=238.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCC
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR 90 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~ 90 (629)
..+|||+|||.++|+++|+++|+.||.|.+|+|.+|. +++++|||||.|.+.++|++|++.||+..+.|+.|+|.+..+
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 4579999999999999999999999999999999884 677999999999999999999999999999999999976654
Q ss_pred CCCc---ccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCccc-
Q 043470 91 DPDA---RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG- 166 (629)
Q Consensus 91 ~~~~---~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~- 166 (629)
.... ......+|||+||+.++|+++|+++|+.||.|.++++..+.+|.++|||||+|++.++|.+|++.++|..+.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 3322 334457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CceeeeecccccCCCC------------CCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCce
Q 043470 167 ---DKRIYVGRFIKKSDRV------------LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSR 231 (629)
Q Consensus 167 ---g~~l~v~~~~~~~~~~------------~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~ 231 (629)
++.++|.+...+.++. ........++|||+||+.++++++|+++|++||.|+++.++.+.+|.++
T Consensus 247 ~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~ 326 (562)
T TIGR01628 247 AKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSR 326 (562)
T ss_pred cccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcC
Confidence 9999998876655441 0111345678999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHHHh
Q 043470 232 GFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILR 277 (629)
Q Consensus 232 g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~ 277 (629)
|||||+|.+.++|.+|++.+|+..++|+.|+|.++..+..+...+.
T Consensus 327 g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~ 372 (562)
T TIGR01628 327 GFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQ 372 (562)
T ss_pred CeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHH
Confidence 9999999999999999999999999999999999998877655443
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.9e-40 Score=305.72 Aligned_cols=310 Identities=28% Similarity=0.438 Sum_probs=234.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCC
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR 90 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~ 90 (629)
...|.|.-||..+|+++|+.+|..+|+|+||+++||+.|+.|+||+||+|.+++||++|+.+||+..+..+.|+|.|+..
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcccCc-
Q 043470 91 DPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDK- 168 (629)
Q Consensus 91 ~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~- 168 (629)
+.......++||.+||+.++.++|.++|+.||.|...+|..|. +|.++|.+||.|...++|++||+.+||..-.|.
T Consensus 121 --Ss~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~t 198 (360)
T KOG0145|consen 121 --SSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCT 198 (360)
T ss_pred --ChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCC
Confidence 3444556899999999999999999999999999999999888 999999999999999999999999999775553
Q ss_pred -eeeeecccccCCCCCCCCccccccccccCCCCCcCHHHHHHHhc----ccCCeeEEEEeeCCCCCceeEEEEEeCCHHH
Q 043470 169 -RIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS----KFGKIASLLIARDENGTSRGFGFVNFDNPDD 243 (629)
Q Consensus 169 -~l~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~----~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~ 243 (629)
.+.|+.....+ ...+..-|..+|. .|+.-......+ |-+-+.....
T Consensus 199 epItVKFannPs--------------------q~t~~a~ls~ly~sp~rr~~Gp~hh~~~r--------~r~~~~~~~~- 249 (360)
T KOG0145|consen 199 EPITVKFANNPS--------------------QKTNQALLSQLYQSPARRYGGPMHHQAQR--------FRLDNLLNPH- 249 (360)
T ss_pred CCeEEEecCCcc--------------------cccchhhhHHhhcCccccCCCcccchhhh--------hccccccchh-
Confidence 34443322211 1111122222221 111100000000 0000000111
Q ss_pred HHHHHHHhCCCeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEE
Q 043470 244 ARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSA 323 (629)
Q Consensus 244 A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~ 323 (629)
.++..+....+++-.-.+..-- ......+.||||-||..+.+|.-|-++|..||.|+.|
T Consensus 250 --~~~~rfsP~~~d~m~~l~~~~l-------------------p~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nV 308 (360)
T KOG0145|consen 250 --AAQARFSPMTIDGMSGLAGVNL-------------------PGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNV 308 (360)
T ss_pred --hhhccCCCccccccceeeeecc-------------------CCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeE
Confidence 1111111111111111110000 0012246899999999999999999999999999999
Q ss_pred EEeeCCC-CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 324 KVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 324 ~v~~~~~-g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
+|++|.+ +++||||||++.+-++|..|+..|||..+++|.|.|+|...|
T Consensus 309 KvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 309 KVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999975 899999999999999999999999999999999999998655
No 7
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2e-38 Score=316.83 Aligned_cols=285 Identities=23% Similarity=0.359 Sum_probs=236.3
Q ss_pred EEEeCCHHHHHHHHHhcCCceecCeeeeeeccCCCCC--------cccCCcccccccccchhhhhHHHHHHHccCCCeeE
Q 043470 57 YVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDPD--------ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS 128 (629)
Q Consensus 57 fV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~~~--------~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s 128 (629)
+-...+.++|.++|.+-.+ -.|.|.-.+++.. .+-...+.|||+.||.++.+++|..+|++.|.|..
T Consensus 38 ~~~~~~~eaal~al~E~tg-----y~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~e 112 (506)
T KOG0117|consen 38 VAGVQSEEAALKALLERTG-----YTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYE 112 (506)
T ss_pred ccccccHHHHHHHHHHhcC-----ceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceee
Confidence 3345567888888855332 2333333333210 11133567999999999999999999999999999
Q ss_pred eEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcc-cCceeeeecccccCCCCCCCCccccccccccCCCCCcCHHH
Q 043470 129 CKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTV-GDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEH 206 (629)
Q Consensus 129 ~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l-~g~~l~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~ 206 (629)
++++.|+ +|.+||||||.|.+.+.|++|++.||+..| .||.|.|..+. ..++|||+|||.++++++
T Consensus 113 lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv------------an~RLFiG~IPK~k~kee 180 (506)
T KOG0117|consen 113 LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV------------ANCRLFIGNIPKTKKKEE 180 (506)
T ss_pred EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee------------ecceeEeccCCccccHHH
Confidence 9999996 999999999999999999999999999888 67888776543 357899999999999999
Q ss_pred HHHHhcccCC-eeEEEEeeCC--CCCceeEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEEEecccchHHHHHHHhhhhH
Q 043470 207 LVEKFSKFGK-IASLLIARDE--NGTSRGFGFVNFDNPDDARRALEAMNG--SVIGSKVLYAARAQKKAEREQILRHQFE 281 (629)
Q Consensus 207 L~~~F~~~G~-v~~~~v~~~~--~g~s~g~afV~F~~~e~A~~Av~~l~g--~~~~g~~l~v~~a~~~~~~~~~~~~~~~ 281 (629)
|.+.+++.++ |..+.+..+. ..++||||||+|.++.+|..|..+|-. ..+.|..+.|.||.+..+.+.+.
T Consensus 181 Ilee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~----- 255 (506)
T KOG0117|consen 181 ILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDT----- 255 (506)
T ss_pred HHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhh-----
Confidence 9999999987 6677766554 578999999999999999999988743 34689999999998876654321
Q ss_pred HHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 043470 282 EKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361 (629)
Q Consensus 282 ~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g 361 (629)
..+-..|||+||+.++|+|.|+++|++||.|+.|+.++| ||||.|.++++|.+|++++||+.|+|
T Consensus 256 --------ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG 320 (506)
T KOG0117|consen 256 --------MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDG 320 (506)
T ss_pred --------hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecC
Confidence 112247999999999999999999999999999999987 99999999999999999999999999
Q ss_pred eEEEEEeccchHHHHHH
Q 043470 362 KPLYVAIAQRKEDRQAH 378 (629)
Q Consensus 362 ~~l~v~~a~~k~~~~~~ 378 (629)
..|.|.||++.++++..
T Consensus 321 ~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 321 SPIEVTLAKPVDKKKKE 337 (506)
T ss_pred ceEEEEecCChhhhccc
Confidence 99999999988776544
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=7e-39 Score=347.10 Aligned_cols=297 Identities=21% Similarity=0.330 Sum_probs=241.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceec-Ceeeeee
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLH-GKMLRIS 86 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~-g~~i~I~ 86 (629)
+...++|||+|||.+++|++|+++|++||+|.+|+|++| .+++++|||||+|.+.++|++||+.||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 88999999999999999999999999998885 7888887
Q ss_pred ccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCC-eeEeEEeeC--CCCCccceEEEEEcCHHHHHHHHHHhCC-
Q 043470 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN-IISCKVATS--EDGKSKGHGFVQFETEESANAAIENLNG- 162 (629)
Q Consensus 87 ~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~-I~s~kv~~d--~~g~skg~afV~f~~~e~A~~Ai~~lng- 162 (629)
++.. .++|||+|||.++++++|++.|+.++. ++++.+... ..++++|||||+|++.++|..|++.++.
T Consensus 134 ~S~~--------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g 205 (578)
T TIGR01648 134 ISVD--------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG 205 (578)
T ss_pred cccc--------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc
Confidence 7653 478999999999999999999999974 444444322 2567899999999999999999998764
Q ss_pred -CcccCceeeeecccccCCCCCCCCccccccccccCCCCCcCHHHHHHHhccc--CCeeEEEEeeCCCCCceeEEEEEeC
Q 043470 163 -TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKF--GKIASLLIARDENGTSRGFGFVNFD 239 (629)
Q Consensus 163 -~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~--G~v~~~~v~~~~~g~s~g~afV~F~ 239 (629)
..+.++.|.|.+.....+.. .......++|||+||+.++++++|+++|++| |.|+++.+++ +||||+|+
T Consensus 206 ki~l~Gr~I~VdwA~p~~~~d-~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~ 277 (578)
T TIGR01648 206 RIQLWGHVIAVDWAEPEEEVD-EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFE 277 (578)
T ss_pred ceEecCceEEEEeeccccccc-ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeC
Confidence 45789999998876544322 2233456789999999999999999999999 9999987764 49999999
Q ss_pred CHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHHH-------hhh---hHHHHHHhhhhcccceeeeecCCCCCCHHH
Q 043470 240 NPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQIL-------RHQ---FEEKRKERILKYKGSNVYVKNIDDDVTDEE 309 (629)
Q Consensus 240 ~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 309 (629)
+.++|.+|++.||+..+.|+.|.|.++.......... ... ...............+++++|++++.+++-
T Consensus 278 s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~ 357 (578)
T TIGR01648 278 DREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAP 357 (578)
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccc
Confidence 9999999999999999999999999997653221000 000 000000001122467899999999999999
Q ss_pred HHHHHhcCCCeE
Q 043470 310 LKAHFSQCGTIT 321 (629)
Q Consensus 310 l~~~F~~~G~v~ 321 (629)
+.++|..+|.|.
T Consensus 358 ~~~~f~~~g~~~ 369 (578)
T TIGR01648 358 SLHFPRMPGPIR 369 (578)
T ss_pred hhhccccCcccc
Confidence 999999998643
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.1e-37 Score=337.91 Aligned_cols=282 Identities=21% Similarity=0.352 Sum_probs=229.4
Q ss_pred CHHHHHHHHHhcCCceecCeeeeeeccCCCCC---cccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCC
Q 043470 62 SPHDAIRAIEVKNHTQLHGKMLRISWSCRDPD---ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGK 138 (629)
Q Consensus 62 ~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~~~---~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~ 138 (629)
-.++|.+||.++++..+........+....+. .......+|||+|||.++++++|.++|+.||.|.+|+|+.|.+|.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 46789999988888766544333333321111 112234789999999999999999999999999999999999999
Q ss_pred ccceEEEEEcCHHHHHHHHHHhCCCccc-CceeeeecccccCCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCC-
Q 043470 139 SKGHGFVQFETEESANAAIENLNGTTVG-DKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGK- 216 (629)
Q Consensus 139 skg~afV~f~~~e~A~~Ai~~lng~~l~-g~~l~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~- 216 (629)
++|||||+|.+.|+|.+||+.+|+..+. ++.+.|... ...++|||+|||.++++++|.+.|++++.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S------------~~~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS------------VDNCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc------------ccCceeEeecCCcchhhHHHHHHhhcccCC
Confidence 9999999999999999999999998885 666655432 23578999999999999999999999974
Q ss_pred eeEEEEeeC--CCCCceeEEEEEeCCHHHHHHHHHHhCC--CeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcc
Q 043470 217 IASLLIARD--ENGTSRGFGFVNFDNPDDARRALEAMNG--SVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYK 292 (629)
Q Consensus 217 v~~~~v~~~--~~g~s~g~afV~F~~~e~A~~Av~~l~g--~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (629)
+.++.+... ..++++|||||+|.++++|..|++.|+. ..+.++.|.|.++..+.+... .....
T Consensus 166 vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~-------------~~~~~ 232 (578)
T TIGR01648 166 VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE-------------DVMAK 232 (578)
T ss_pred ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc-------------ccccc
Confidence 444444332 3568899999999999999999998864 357899999999876543211 01123
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcC--CCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQC--GTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..+|||+||++++|+++|+++|+.| |.|++|++++ +||||+|.+.++|.+|+++||+..|+|+.|.|.|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4689999999999999999999999 9999998864 499999999999999999999999999999999998
Q ss_pred chHHH
Q 043470 371 RKEDR 375 (629)
Q Consensus 371 ~k~~~ 375 (629)
+++..
T Consensus 306 p~~~~ 310 (578)
T TIGR01648 306 PVDKK 310 (578)
T ss_pred CCCcc
Confidence 76543
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.2e-35 Score=322.17 Aligned_cols=170 Identities=22% Similarity=0.485 Sum_probs=155.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
...++||||||+++++|++|+++|+.||+|.+|+|++|..|++++|||||+|.+.++|++|++.||+..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCc---------ccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHH
Q 043470 89 CRDPDA---------RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158 (629)
Q Consensus 89 ~~~~~~---------~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~ 158 (629)
...+.. ......+|||+||+.++++++|+++|+.||.|.+|++..|. +|.++|||||+|++.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 533211 11234689999999999999999999999999999999987 78899999999999999999999
Q ss_pred HhCCCcccCceeeeeccccc
Q 043470 159 NLNGTTVGDKRIYVGRFIKK 178 (629)
Q Consensus 159 ~lng~~l~g~~l~v~~~~~~ 178 (629)
.+|+..++|+.|.|.+....
T Consensus 265 amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HhCCCeeCCeEEEEEecCCC
Confidence 99999999999999887753
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=300.27 Aligned_cols=344 Identities=24% Similarity=0.428 Sum_probs=278.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCC
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR 90 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~ 90 (629)
+.||||++||++++.++|.++|+.+|+|..+.|+.+..++.++||+||.|.-.+|+++|+..++...|.|+.|+|..+.+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred CCCcc------------------------cCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEE
Q 043470 91 DPDAR------------------------KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQ 146 (629)
Q Consensus 91 ~~~~~------------------------~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~ 146 (629)
..... .-....|.|+|||..+...+|..+|+.||.|+.+.|....+|.-.|||||.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 43211 011457999999999999999999999999999999988888888999999
Q ss_pred EcCHHHHHHHHHHhCCCcccCceeeeecccccCCCCC-----------------------------------------C-
Q 043470 147 FETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL-----------------------------------------P- 184 (629)
Q Consensus 147 f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~~~~-----------------------------------------~- 184 (629)
|.+..+|..|++.+|+..|.|+.|-|.|++.+..... .
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 9999999999999999999999999988854321000 0
Q ss_pred -C-----------------------------------------CccccccccccCCCCCcCHHHHHHHhcccCCeeEEEE
Q 043470 185 -S-----------------------------------------PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222 (629)
Q Consensus 185 -~-----------------------------------------~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v 222 (629)
. ......+|||.|||+++++++|.+.|++||+|..+.+
T Consensus 245 ~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~i 324 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAII 324 (678)
T ss_pred ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEE
Confidence 0 0001146999999999999999999999999999888
Q ss_pred eeCC-CCCceeEEEEEeCCHHHHHHHHHHhC-----C-CeeCCeEEEEecccchHHHHHH--------------------
Q 043470 223 ARDE-NGTSRGFGFVNFDNPDDARRALEAMN-----G-SVIGSKVLYAARAQKKAEREQI-------------------- 275 (629)
Q Consensus 223 ~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~-----g-~~~~g~~l~v~~a~~~~~~~~~-------------------- 275 (629)
..+. +++++|.|||.|.+..++..|++... + ..+.|+.|.|..+-...+....
T Consensus 325 V~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~E 404 (678)
T KOG0127|consen 325 VKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLARE 404 (678)
T ss_pred EeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeecc
Confidence 7775 89999999999999999999998762 3 6688999999888665443322
Q ss_pred -------------------HhhhhHHHHHHh----hhhcccceeeeecCCCCCCHHHHHHHHhc----C-CCe-EEEEEe
Q 043470 276 -------------------LRHQFEEKRKER----ILKYKGSNVYVKNIDDDVTDEELKAHFSQ----C-GTI-TSAKVM 326 (629)
Q Consensus 276 -------------------~~~~~~~~~~~~----~~~~~~~~l~V~nl~~~~t~~~l~~~F~~----~-G~v-~~~~v~ 326 (629)
.+..+....... .....-+.|.|.|||..+++..|..+... | +.+ ..|+.+
T Consensus 405 G~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~ 484 (678)
T KOG0127|consen 405 GLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQI 484 (678)
T ss_pred CccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhh
Confidence 111111111111 11224567889999999999999887743 3 233 344555
Q ss_pred eCC----CCCeeeEEEEEeCCHHHHHHHHHHh
Q 043470 327 RDE----KGINKGFGFVCFSSPEEASKAVNTF 354 (629)
Q Consensus 327 ~~~----~g~~kg~~fV~f~~~~~A~~A~~~l 354 (629)
.+. .+.+.||+|+.|..+|.|.+|+..+
T Consensus 485 ~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 485 KFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred hhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 442 4789999999999999999999855
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-36 Score=282.80 Aligned_cols=235 Identities=25% Similarity=0.459 Sum_probs=197.5
Q ss_pred CcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccc
Q 043470 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIK 177 (629)
Q Consensus 98 ~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~ 177 (629)
.-++|||+||+.++|++-|..+|+..|.+.+||++.|+ +.|.+...
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e----------------------------------~~v~wa~~ 50 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE----------------------------------LKVNWATA 50 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhh----------------------------------hccccccC
Confidence 35789999999999999999999999999999999872 22333322
Q ss_pred cCCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCee
Q 043470 178 KSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVI 256 (629)
Q Consensus 178 ~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~ 256 (629)
...... ......-.+||+.|..+++.++|++.|.+||+|.+++|++|. +++++||+||.|.+.++|+.|+..|||..+
T Consensus 51 p~nQsk-~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 51 PGNQSK-PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred cccCCC-CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 211111 111224569999999999999999999999999999999995 899999999999999999999999999999
Q ss_pred CCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeE
Q 043470 257 GSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF 336 (629)
Q Consensus 257 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~ 336 (629)
++|.|+-.|+..|..........+++-.. .....+|+|||+|++.-+||++||+.|+.||.|.+|+|+++ +||
T Consensus 130 G~R~IRTNWATRKp~e~n~~~ltfdeV~N--Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGY 202 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPSEMNGKPLTFDEVYN--QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGY 202 (321)
T ss_pred ccceeeccccccCccccCCCCccHHHHhc--cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cce
Confidence 99999999999887333222233333222 23456899999999999999999999999999999999997 789
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccchHH
Q 043470 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED 374 (629)
Q Consensus 337 ~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~~ 374 (629)
+||.|++.|.|.+||..+|+..|+|..+++.|.+....
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 99999999999999999999999999999999986544
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=297.04 Aligned_cols=250 Identities=24% Similarity=0.415 Sum_probs=224.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceec-Ceeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLH-GKMLRI 85 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~-g~~i~I 85 (629)
.+..++.||||.||.|+.|++|..+|+++|+|.++|+.+|.-++.++|||||.|.+.++|++|+++||+..|+ |+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 4467899999999999999999999999999999999999999999999999999999999999999999886 899999
Q ss_pred eccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCC-eeEeEEeeCC--CCCccceEEEEEcCHHHHHHHHHHhC-
Q 043470 86 SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN-IISCKVATSE--DGKSKGHGFVQFETEESANAAIENLN- 161 (629)
Q Consensus 86 ~~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~-I~s~kv~~d~--~g~skg~afV~f~~~e~A~~Ai~~ln- 161 (629)
..|..+ +.|||+|+|++.+.++|++.+++.+. |+.+.|..+. ..+++|||||+|++...|..|..+|-
T Consensus 159 c~Svan--------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 159 CVSVAN--------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred EEeeec--------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 877755 88999999999999999999999885 6666666655 67899999999999999999988853
Q ss_pred C-CcccCceeeeecccccCCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCC
Q 043470 162 G-TTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDN 240 (629)
Q Consensus 162 g-~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~ 240 (629)
+ ..+-|..+.|.|..+..+.... ......-|||+||+.++|+|.|+++|+.||.|+.++.++| ||||.|.+
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~e 302 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAE 302 (506)
T ss_pred CceeecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecc
Confidence 3 4568889999998887665433 5667788999999999999999999999999999998866 99999999
Q ss_pred HHHHHHHHHHhCCCeeCCeEEEEecccchHHH
Q 043470 241 PDDARRALEAMNGSVIGSKVLYAARAQKKAER 272 (629)
Q Consensus 241 ~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~ 272 (629)
.++|.+|++.+|++.++|..|.|..|++..+.
T Consensus 303 R~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 303 REDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred hHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 99999999999999999999999999876543
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.3e-35 Score=321.99 Aligned_cols=340 Identities=21% Similarity=0.263 Sum_probs=232.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
....++|||+|||.++|+++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|++||+ |++..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4557899999999999999999999999999999999999999999999999999999999996 899999999999988
Q ss_pred cCCCCCc----------ccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHH
Q 043470 88 SCRDPDA----------RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAA 156 (629)
Q Consensus 88 s~~~~~~----------~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~A 156 (629)
+...... ......+|||+||+.++++++|.++|+.||.|.+|.+..+. +|.++|||||+|.+.++|..|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 7643211 11224789999999999999999999999999999999988 679999999999999999999
Q ss_pred HHHhCCCcccCceeeeecccccCCCCCCCC-cccccc-ccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEE
Q 043470 157 IENLNGTTVGDKRIYVGRFIKKSDRVLPSP-AAKYTN-LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234 (629)
Q Consensus 157 i~~lng~~l~g~~l~v~~~~~~~~~~~~~~-~~~~~~-v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~a 234 (629)
++.|||..+.|+.|.|.+............ ...... -..+..........+...+...+......+... .+ ....
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~ 321 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGT-GS--KIAL 321 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCc-cc--hhhh
Confidence 999999999999999988663322211000 000000 000000111222333333222221100000000 00 0000
Q ss_pred EEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHHHhhhhHH-HHHHhhhhcccceeeeecCCCCCC-------
Q 043470 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEE-KRKERILKYKGSNVYVKNIDDDVT------- 306 (629)
Q Consensus 235 fV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~V~nl~~~~t------- 306 (629)
+ ..+.........+....+... +...... ..........+.+|+|.|+.+..+
T Consensus 322 ~-------------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~ 382 (457)
T TIGR01622 322 M-------------QKLQRDGIIDPNIPSRYATGA------LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFD 382 (457)
T ss_pred h-------------ccccccccccccccccccccc------cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHH
Confidence 0 000000000000000000000 0000000 000000124567899999965543
Q ss_pred ---HHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccchH
Q 043470 307 ---DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373 (629)
Q Consensus 307 ---~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~ 373 (629)
.+||++.|++||.|.+|.|... .+.|++||.|.+.++|.+|++.|||+.|+|+.|.|.|.....
T Consensus 383 ~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 383 NEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 3789999999999999999743 467999999999999999999999999999999999986544
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=6.2e-35 Score=319.35 Aligned_cols=262 Identities=21% Similarity=0.279 Sum_probs=210.3
Q ss_pred cccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHH--hCCCcccCceeeeeccc
Q 043470 99 VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN--LNGTTVGDKRIYVGRFI 176 (629)
Q Consensus 99 ~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~--lng~~l~g~~l~v~~~~ 176 (629)
...|||+|||.++++++|+++|+.||.|.+|+++. +++||||+|++.++|.+|++. +++..+.|+.|+|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 46799999999999999999999999999999985 568999999999999999986 47889999999998876
Q ss_pred ccC-CCCC-----CCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 043470 177 KKS-DRVL-----PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEA 250 (629)
Q Consensus 177 ~~~-~~~~-----~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~ 250 (629)
.+. .+.. ........+|||+||+..+++++|+++|++||.|.++.++++. .+++|||+|.+.++|.+|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHHHH
Confidence 543 1111 1112345689999999999999999999999999999998763 246999999999999999999
Q ss_pred hCCCeeCC--eEEEEecccchHH--------------------HHHHHhhhhHHHHH-----------------------
Q 043470 251 MNGSVIGS--KVLYAARAQKKAE--------------------REQILRHQFEEKRK----------------------- 285 (629)
Q Consensus 251 l~g~~~~g--~~l~v~~a~~~~~--------------------~~~~~~~~~~~~~~----------------------- 285 (629)
|||..+.+ ..|.|.++..... +...+.........
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 99999854 4666666543110 00000000000000
Q ss_pred -------------------------------H---hhhhcccceeeeecCCC-CCCHHHHHHHHhcCCCeEEEEEeeCCC
Q 043470 286 -------------------------------E---RILKYKGSNVYVKNIDD-DVTDEELKAHFSQCGTITSAKVMRDEK 330 (629)
Q Consensus 286 -------------------------------~---~~~~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~~~v~~~~~ 330 (629)
. ......+++|||+||++ .+|+++|+++|+.||.|.+|+|+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-- 311 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-- 311 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--
Confidence 0 00022567999999998 6999999999999999999999987
Q ss_pred CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 331 g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
.+|||||+|.+.++|.+|++.|||..|.|++|+|.+++.+
T Consensus 312 --~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 312 --KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred --CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 4689999999999999999999999999999999998644
No 16
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5e-34 Score=283.92 Aligned_cols=357 Identities=24% Similarity=0.380 Sum_probs=237.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc-eecC--eeeeee
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT-QLHG--KMLRIS 86 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~-~i~g--~~i~I~ 86 (629)
+.-.||||-+|..++|.||+++|++||.|.+|.|+||+.|+.++|||||.|.+.++|.+|+..|++. .|-| .+|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 3348999999999999999999999999999999999999999999999999999999999998876 3444 677777
Q ss_pred ccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCc-c
Q 043470 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTT-V 165 (629)
Q Consensus 87 ~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~-l 165 (629)
++.... .+....+++||+-|++.+++++++++|++||.|++|.|.+|.++.|||+|||.|.+.|.|..||+.+||.. +
T Consensus 113 ~Ad~E~-er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tm 191 (510)
T KOG0144|consen 113 YADGER-ERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM 191 (510)
T ss_pred ccchhh-hccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceee
Confidence 765332 22245688999999999999999999999999999999999999999999999999999999999999854 4
Q ss_pred cC--ceeeeecccccCCCCCCCC-------------cccccc------------------------ccccCCCCC--cCH
Q 043470 166 GD--KRIYVGRFIKKSDRVLPSP-------------AAKYTN------------------------LFMKNLDSD--VTE 204 (629)
Q Consensus 166 ~g--~~l~v~~~~~~~~~~~~~~-------------~~~~~~------------------------v~V~nLp~~--~t~ 204 (629)
+| ..+.|.+....+++..... ...+.+ .-+++++.- +..
T Consensus 192 eGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a 271 (510)
T KOG0144|consen 192 EGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNA 271 (510)
T ss_pred ccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcch
Confidence 44 4577777766655421000 000000 001111110 111
Q ss_pred HHHHHH-------------------------hcccCCeeEEEEe---eCCC-----------------CCc------ee-
Q 043470 205 EHLVEK-------------------------FSKFGKIASLLIA---RDEN-----------------GTS------RG- 232 (629)
Q Consensus 205 e~L~~~-------------------------F~~~G~v~~~~v~---~~~~-----------------g~s------~g- 232 (629)
..+... -+.-|...+..-. .+.. +.. .+
T Consensus 272 ~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~ 351 (510)
T KOG0144|consen 272 TQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGM 351 (510)
T ss_pred hHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccccc
Confidence 111100 0000111000000 0000 000 00
Q ss_pred ------------------EEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccc
Q 043470 233 ------------------FGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGS 294 (629)
Q Consensus 233 ------------------~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (629)
.+...|. +..+..... .+.+..++...+...--.....................|.
T Consensus 352 a~a~~~sp~aa~~~~lq~~~ltp~~----~~~~~~~tQ--a~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGa 425 (510)
T KOG0144|consen 352 AGAGTTSPVAASLANLQQIGLTPFA----GAAALDHTQ--AMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGA 425 (510)
T ss_pred ccccccCcccccccccccccCCChh----hhhhHhHHH--hhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCcc
Confidence 0111111 000000000 0000000000000000000000000000011122456788
Q ss_pred eeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccchH
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~ 373 (629)
+|||.+||.+.-|.||-..|..||.|.+.+|..|+ +|.+|.|+||.|++..+|..||..|||..+++|+++|.+.+.+.
T Consensus 426 nlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 426 NLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred ceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 99999999999999999999999999999999986 89999999999999999999999999999999999999987653
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1e-32 Score=306.49 Aligned_cols=255 Identities=21% Similarity=0.385 Sum_probs=207.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcC------------CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEF------------KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKN 74 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~------------G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln 74 (629)
..+..++|||||||+++|+++|+++|+.+ +.|.++.+. +++|||||+|.+.++|+.|| .||
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhh-cCC
Confidence 34557899999999999999999999975 345555554 35789999999999999999 599
Q ss_pred CceecCeeeeeeccCCCC---------------------------CcccCCcccccccccchhhhhHHHHHHHccCCCee
Q 043470 75 HTQLHGKMLRISWSCRDP---------------------------DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNII 127 (629)
Q Consensus 75 ~~~i~g~~i~I~~s~~~~---------------------------~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~ 127 (629)
+..|.|++|+|.+..... ........+|||+|||..+++++|.++|+.||.|.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 999999999997543211 00112246899999999999999999999999999
Q ss_pred EeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccccCCCCC----------------------C
Q 043470 128 SCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL----------------------P 184 (629)
Q Consensus 128 s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~~~~----------------------~ 184 (629)
.+++..+. +|.++|||||+|.+.++|..|++.|+|..+.|+.|.|.+......... .
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQ 403 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhcc
Confidence 99999886 899999999999999999999999999999999999977643221110 0
Q ss_pred CCccccccccccCCCCCc----------CHHHHHHHhcccCCeeEEEEeeCC----CCCceeEEEEEeCCHHHHHHHHHH
Q 043470 185 SPAAKYTNLFMKNLDSDV----------TEEHLVEKFSKFGKIASLLIARDE----NGTSRGFGFVNFDNPDDARRALEA 250 (629)
Q Consensus 185 ~~~~~~~~v~V~nLp~~~----------t~e~L~~~F~~~G~v~~~~v~~~~----~g~s~g~afV~F~~~e~A~~Av~~ 250 (629)
........|+|.|+.... ..++|+++|++||.|.+|.|.++. ++.+.|++||+|.+.++|.+|+..
T Consensus 404 ~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ 483 (509)
T TIGR01642 404 IGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEG 483 (509)
T ss_pred ccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHH
Confidence 001234567888885321 236899999999999999998752 356789999999999999999999
Q ss_pred hCCCeeCCeEEEEecccc
Q 043470 251 MNGSVIGSKVLYAARAQK 268 (629)
Q Consensus 251 l~g~~~~g~~l~v~~a~~ 268 (629)
|||..|+|+.|.+.+...
T Consensus 484 lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 484 MNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCEECCeEEEEEEeCH
Confidence 999999999999988754
No 18
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-33 Score=262.07 Aligned_cols=219 Identities=31% Similarity=0.553 Sum_probs=194.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
...|+||||||+.++||+.|..+|+++|+|.+++|+.| .+.|+|.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNWA 48 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhccccc
Confidence 35689999999999999999999999999999999887 4566666
Q ss_pred CCCCCcccC---CcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCc
Q 043470 89 CRDPDARKS---GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTT 164 (629)
Q Consensus 89 ~~~~~~~~s---~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~ 164 (629)
.......+. ....+||+.|.+.|+.++|++.|..||.|.+|+|++|. +++||||+||.|.+.++|+.||..+||.=
T Consensus 49 ~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW 128 (321)
T KOG0148|consen 49 TAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW 128 (321)
T ss_pred cCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee
Confidence 544222221 14569999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred ccCceeeeecccccCCCCC----------CCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEE
Q 043470 165 VGDKRIYVGRFIKKSDRVL----------PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFG 234 (629)
Q Consensus 165 l~g~~l~v~~~~~~~~~~~----------~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~a 234 (629)
|..|.|+..|..++..+.. .......++||++|+..-++|++|++.|++||.|..+.+.++ +||+
T Consensus 129 lG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYa 203 (321)
T KOG0148|consen 129 LGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYA 203 (321)
T ss_pred eccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceE
Confidence 9999999999988764432 234456789999999999999999999999999999999966 7899
Q ss_pred EEEeCCHHHHHHHHHHhCCCeeCCeEEEEeccc
Q 043470 235 FVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267 (629)
Q Consensus 235 fV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~ 267 (629)
||.|++.|+|.+|+..+|+..++|..+++.|-.
T Consensus 204 FVrF~tkEaAahAIv~mNntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 204 FVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGK 236 (321)
T ss_pred EEEecchhhHHHHHHHhcCceeCceEEEEeccc
Confidence 999999999999999999999999999998864
No 19
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-32 Score=282.86 Aligned_cols=256 Identities=39% Similarity=0.655 Sum_probs=234.7
Q ss_pred cccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccccCC
Q 043470 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180 (629)
Q Consensus 101 ~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~ 180 (629)
.+||+ +++++..|+++|+.+|++++++|..|. + |-|||||.|.+.++|.+|++.+|...+.|+.+.+.|..+...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 46777 899999999999999999999999999 7 999999999999999999999999999999999988765443
Q ss_pred CCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 043470 181 RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKV 260 (629)
Q Consensus 181 ~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~ 260 (629)
. +||+||+++++.++|.++|+.||+|.+|++..+.+| ++|| ||+|++.++|.+|++.+||..+.+++
T Consensus 78 ~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 78 L-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred e-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 2 999999999999999999999999999999999998 9999 99999999999999999999999999
Q ss_pred EEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEE
Q 043470 261 LYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVC 340 (629)
Q Consensus 261 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~ 340 (629)
++|.....+.++...+.. . ...-+++||+|++.+++++.|.+.|+.||.|.++.++.+..|.++||+||.
T Consensus 145 i~vg~~~~~~er~~~~~~-~---------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGE-Y---------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred eEEeeccchhhhcccccc-h---------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 999999999887765433 1 112358999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeEEEEEeccchHHHHHHHHHHHH
Q 043470 341 FSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYA 384 (629)
Q Consensus 341 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~~~~~~~~~~~~ 384 (629)
|.+.++|..|+..||+..++++.+.|.-++.+.++...+...+.
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~ 258 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFE 258 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhH
Confidence 99999999999999999999999999999998877766655433
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=5e-32 Score=301.01 Aligned_cols=267 Identities=20% Similarity=0.311 Sum_probs=207.7
Q ss_pred CcccccccccchhhhhHHHHHHHccC------------CCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcc
Q 043470 98 GVANLFVKNLIESIDNVRLQEMFQNF------------GNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV 165 (629)
Q Consensus 98 ~~~~v~V~nLp~~it~~~L~~~fs~f------------G~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l 165 (629)
...+|||+|||.++++++|.++|+.+ +.|..+.+ +..+|||||+|.+.++|..|+. |+|..+
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 35789999999999999999999975 23333333 3468999999999999999995 999999
Q ss_pred cCceeeeecccccCCCC-----------------------CCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEE
Q 043470 166 GDKRIYVGRFIKKSDRV-----------------------LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLI 222 (629)
Q Consensus 166 ~g~~l~v~~~~~~~~~~-----------------------~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v 222 (629)
.|+.|.|.......... ........++|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999986543221000 0001123478999999999999999999999999999999
Q ss_pred eeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHH-----------HhhhhHHHHHHhhhh
Q 043470 223 ARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI-----------LRHQFEEKRKERILK 290 (629)
Q Consensus 223 ~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~-----------~~~~~~~~~~~~~~~ 290 (629)
+.+. +|.++|||||+|.+.++|..|++.|++..+.|+.|.|.++......... ....... .......
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 406 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQ-SILQIGG 406 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchh-hhccccC
Confidence 8874 7999999999999999999999999999999999999887532111000 0000000 0001112
Q ss_pred cccceeeeecCCCC---C-------CHHHHHHHHhcCCCeEEEEEeeCC----CCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 043470 291 YKGSNVYVKNIDDD---V-------TDEELKAHFSQCGTITSAKVMRDE----KGINKGFGFVCFSSPEEASKAVNTFHG 356 (629)
Q Consensus 291 ~~~~~l~V~nl~~~---~-------t~~~l~~~F~~~G~v~~~~v~~~~----~g~~kg~~fV~f~~~~~A~~A~~~l~~ 356 (629)
..+.+|+|.|+... + ..++|+++|++||.|++|+|+++. .+.++||+||+|.+.++|.+|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 35678999999532 1 236899999999999999998763 345789999999999999999999999
Q ss_pred ceeCCeEEEEEeccc
Q 043470 357 YMLHRKPLYVAIAQR 371 (629)
Q Consensus 357 ~~~~g~~l~v~~a~~ 371 (629)
..|+|+.|.|.|...
T Consensus 487 r~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 487 RKFNDRVVVAAFYGE 501 (509)
T ss_pred CEECCeEEEEEEeCH
Confidence 999999999999764
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.8e-32 Score=276.04 Aligned_cols=276 Identities=30% Similarity=0.467 Sum_probs=230.0
Q ss_pred ccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeeccccc
Q 043470 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178 (629)
Q Consensus 100 ~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~ 178 (629)
.+|||++||.+++.++|.++|+.+|+|..|.+.++. .+.++||+||.|.-.|++++|++..++..++|+.+.|.....+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 789999999999999999999999999999999988 7789999999999999999999999999999999999877654
Q ss_pred CCCCC-------------CC-----C--ccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEe
Q 043470 179 SDRVL-------------PS-----P--AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238 (629)
Q Consensus 179 ~~~~~-------------~~-----~--~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F 238 (629)
..... .. . ...--.|.|.|||+.+.+.+|..+|+.||.|..+.|.+..+|+..|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 33220 00 0 0113468999999999999999999999999999999998888889999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHH-------HhhhhH-----------------------HHHHH--
Q 043470 239 DNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQI-------LRHQFE-----------------------EKRKE-- 286 (629)
Q Consensus 239 ~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~-------~~~~~~-----------------------~~~~~-- 286 (629)
.+..+|..|++.+|+..|.|+.+-|.||-.+...... ++.... ....+
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 9999999999999999999999999999665322110 000000 00000
Q ss_pred ----------------------------------------hhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEe
Q 043470 287 ----------------------------------------RILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVM 326 (629)
Q Consensus 287 ----------------------------------------~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~ 326 (629)
+.....+.+|||+||++++|+++|.++|++||.|..+.++
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0001124689999999999999999999999999999999
Q ss_pred eCC-CCCeeeEEEEEeCCHHHHHHHHHHh-----CC-ceeCCeEEEEEeccchHHH
Q 043470 327 RDE-KGINKGFGFVCFSSPEEASKAVNTF-----HG-YMLHRKPLYVAIAQRKEDR 375 (629)
Q Consensus 327 ~~~-~g~~kg~~fV~f~~~~~A~~A~~~l-----~~-~~~~g~~l~v~~a~~k~~~ 375 (629)
.++ +|.++|+|||.|.+..+|..||... .| ..++||.|.|.+|-.+++-
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHH
Confidence 887 7999999999999999999999866 34 7789999999999866553
No 22
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=1.5e-29 Score=262.08 Aligned_cols=171 Identities=32% Similarity=0.546 Sum_probs=154.5
Q ss_pred CccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEe
Q 043470 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264 (629)
Q Consensus 186 ~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~ 264 (629)
.....++|||+|||.++++++|+++|+.||.|.+|.|+.|. +++++|||||+|.+.++|.+|++.|++..+.++.|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999884 89999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCC
Q 043470 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSS 343 (629)
Q Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~ 343 (629)
++..... ....++|||+|||+++|+++|+++|++||.|++|+|+.|+ +|++||||||+|.+
T Consensus 183 ~a~p~~~------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 183 YARPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred ccccccc------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC
Confidence 8754221 1234689999999999999999999999999999999986 79999999999999
Q ss_pred HHHHHHHHHHhCCceeCC--eEEEEEeccchHH
Q 043470 344 PEEASKAVNTFHGYMLHR--KPLYVAIAQRKED 374 (629)
Q Consensus 344 ~~~A~~A~~~l~~~~~~g--~~l~v~~a~~k~~ 374 (629)
.++|.+|++.||+..+.+ ++|.|+|+..+..
T Consensus 245 ~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 245 REEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 999999999999998865 7999999986543
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=1.6e-29 Score=261.93 Aligned_cols=169 Identities=29% Similarity=0.449 Sum_probs=153.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
.....++|||+|||+++||++|+++|+.||+|++|+|++|..|++++|||||+|.+.++|++||+.||+..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcc
Q 043470 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTV 165 (629)
Q Consensus 87 ~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l 165 (629)
|+.... ......+|||.|||.++++++|+++|++||.|..|+|..|. +++++|+|||+|++.++|.+||+.||+..+
T Consensus 183 ~a~p~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 183 YARPGG--ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred cccccc--cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 986432 22335689999999999999999999999999999999987 899999999999999999999999999998
Q ss_pred cC--ceeeeecccc
Q 043470 166 GD--KRIYVGRFIK 177 (629)
Q Consensus 166 ~g--~~l~v~~~~~ 177 (629)
.+ +.|.|.+...
T Consensus 261 ~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 261 EGGSQPLTVRLAEE 274 (346)
T ss_pred CCCceeEEEEECCc
Confidence 76 5677765544
No 24
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=99.96 E-value=1.1e-30 Score=195.57 Aligned_cols=64 Identities=67% Similarity=0.956 Sum_probs=62.3
Q ss_pred CHHHHHHHHHhhhhhhhhhcCCCCccchhhhhccCChHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 043470 544 SPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLS 607 (629)
Q Consensus 544 ~~~~q~~~~ge~l~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~ 607 (629)
+|++|||+|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 ~p~~qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~ell~lle~~~~L~~kv~EA~~vl~~~ 64 (64)
T smart00517 1 PPQEQKQALGERLYPKVQALEPELAGKITGMLLEMDNSELLHLLESPELLRSKVDEALEVLKSH 64 (64)
T ss_pred CHHHHHHHHhHHHhHHHHhhCcccCCcCeeeeeCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999999999999999999999999999875
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=4.4e-29 Score=263.54 Aligned_cols=329 Identities=28% Similarity=0.440 Sum_probs=261.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
..+.+|||+|||+..+|+||..+| |||.|..++.|-+|-.++++..+.|+-+.|..+
T Consensus 225 ~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~ 281 (725)
T KOG0110|consen 225 SETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPS 281 (725)
T ss_pred HhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCc
Confidence 345689999999999999999999 789999999999999999999888887775433
Q ss_pred CCC-----------------------------------------------------------CCc---------------
Q 043470 89 CRD-----------------------------------------------------------PDA--------------- 94 (629)
Q Consensus 89 ~~~-----------------------------------------------------------~~~--------------- 94 (629)
... .+.
T Consensus 282 ~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~ 361 (725)
T KOG0110|consen 282 KEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVV 361 (725)
T ss_pred chhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhc
Confidence 200 000
Q ss_pred -------------------ccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHH
Q 043470 95 -------------------RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANA 155 (629)
Q Consensus 95 -------------------~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~ 155 (629)
..-....|+|+|||..+..++|.+.|..||.|..+- .++.|. -++|+|.+..+|..
T Consensus 362 ~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvl--lp~~G~---~aiv~fl~p~eAr~ 436 (725)
T KOG0110|consen 362 QEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVL--LPPGGT---GAIVEFLNPLEARK 436 (725)
T ss_pred hhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceee--cCcccc---eeeeeecCccchHH
Confidence 011124588999999999999999999999998772 234332 49999999999999
Q ss_pred HHHHhCCCcccCceeeeecccccC-----------------------CCCC---------C------------CCccccc
Q 043470 156 AIENLNGTTVGDKRIYVGRFIKKS-----------------------DRVL---------P------------SPAAKYT 191 (629)
Q Consensus 156 Ai~~lng~~l~g~~l~v~~~~~~~-----------------------~~~~---------~------------~~~~~~~ 191 (629)
|.+.+....+....+++.|.-... ++.. . ......+
T Consensus 437 Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t 516 (725)
T KOG0110|consen 437 AFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETET 516 (725)
T ss_pred HHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccch
Confidence 999998887777666654431100 0000 0 0001124
Q ss_pred cccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCC----CceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEeccc
Q 043470 192 NLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG----TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267 (629)
Q Consensus 192 ~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g----~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~ 267 (629)
.+||+||.++++.++|...|.+.|.|.++.|....++ .|.|||||+|.+.++|..|++.|+|..+.|..|++..+.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 4999999999999999999999999999988776654 355999999999999999999999999999999999987
Q ss_pred chHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeC-CCCCeeeEEEEEeCCHHH
Q 043470 268 KKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEE 346 (629)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~-~~g~~kg~~fV~f~~~~~ 346 (629)
.+.... .. ........+++|+|+|||...+-.+++++|..||.|.+|+|... ..+.++|||||.|-++.+
T Consensus 597 ~k~~~~--~g-------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~e 667 (725)
T KOG0110|consen 597 NKPAST--VG-------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPRE 667 (725)
T ss_pred Cccccc--cc-------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHH
Confidence 222111 11 11222334789999999999999999999999999999999987 345579999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEeccchHH
Q 043470 347 ASKAVNTFHGYMLHRKPLYVAIAQRKED 374 (629)
Q Consensus 347 A~~A~~~l~~~~~~g~~l~v~~a~~k~~ 374 (629)
|.+|+..|....+.||.|.+.||.....
T Consensus 668 a~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 668 AKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHHhhcccceechhhheehhccchH
Confidence 9999999999999999999999987655
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=3.7e-27 Score=256.05 Aligned_cols=178 Identities=24% Similarity=0.463 Sum_probs=153.4
Q ss_pred cccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecc
Q 043470 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266 (629)
Q Consensus 188 ~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a 266 (629)
...++|||+||+.++++++|+++|++||.|.+|.++.+. +|+++|||||+|.+.++|.+|++.+||..+.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 345789999999999999999999999999999999885 8999999999999999999999999999999999999865
Q ss_pred cchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHH
Q 043470 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPE 345 (629)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~ 345 (629)
........... . ........++|||+||+.++++++|+++|+.||.|++|+|.+|+ +|++||||||+|.+.+
T Consensus 185 ~~~p~a~~~~~----~---~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 185 SNMPQAQPIID----M---VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred ccccccccccc----c---ccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 43321110000 0 00011234689999999999999999999999999999999986 5789999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 346 EASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 346 ~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
+|.+|++.||+..++|+.|+|.++..+
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 999999999999999999999998754
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=7e-27 Score=233.13 Aligned_cols=172 Identities=26% Similarity=0.495 Sum_probs=149.9
Q ss_pred cccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCe-eCC--eEEEE
Q 043470 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSV-IGS--KVLYA 263 (629)
Q Consensus 188 ~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~-~~g--~~l~v 263 (629)
...-++||+.+|..|+|+||+++|++||.|.+|.+++|+ ++.++|||||.|.+.++|.+|+.+||... +.| ..+.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 455689999999999999999999999999999999997 79999999999999999999999998754 444 45666
Q ss_pred ecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCC
Q 043470 264 ARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS 343 (629)
Q Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~ 343 (629)
..+....++. ....+|||+-|++.+||.|++++|++||.|++|.|++|+++.|||||||+|.+
T Consensus 112 k~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 112 KYADGERERI-----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred cccchhhhcc-----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 6665544332 22357999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCce-eC--CeEEEEEeccchHHHH
Q 043470 344 PEEASKAVNTFHGYM-LH--RKPLYVAIAQRKEDRQ 376 (629)
Q Consensus 344 ~~~A~~A~~~l~~~~-~~--g~~l~v~~a~~k~~~~ 376 (629)
.|-|..|++.|||.. +. ..+|.|+||..+.+|.
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 999999999999954 43 5799999998766554
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.1e-26 Score=226.43 Aligned_cols=169 Identities=22% Similarity=0.498 Sum_probs=153.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCCC
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD 91 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~ 91 (629)
|+||||.+..++.|+.|+..|..||+|.||.+.+|..|++.+|||||+|+-+|.|..|++.||+..+.||.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999755433
Q ss_pred CC---------cccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhC
Q 043470 92 PD---------ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLN 161 (629)
Q Consensus 92 ~~---------~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~ln 161 (629)
+. .....-..|||..+.++.+++||+..|+.||.|+.|++..+. .+..|||+|++|.+..+-.+|+..+|
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 21 111234679999999999999999999999999999999998 66799999999999999999999999
Q ss_pred CCcccCceeeeecccccCC
Q 043470 162 GTTVGDKRIYVGRFIKKSD 180 (629)
Q Consensus 162 g~~l~g~~l~v~~~~~~~~ 180 (629)
-..+.|..++|+.++....
T Consensus 274 lFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred hhhcccceEecccccCCCc
Confidence 9999999999998876543
No 29
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=2.4e-26 Score=204.98 Aligned_cols=170 Identities=31% Similarity=0.505 Sum_probs=152.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
....+||||||+..++|+.|+|+|-++|+|++|++.+|+.|....|||||+|.+.|||+-|++.||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeE-eEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCccc
Q 043470 89 CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS-CKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVG 166 (629)
Q Consensus 89 ~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s-~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~ 166 (629)
......-. -..++||+||++.+|++.|+++|+.||.+.+ -+++.|. +|+++|+|||.|.+.|.+.+|+..+||..+.
T Consensus 87 s~~~~nl~-vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 87 SAHQKNLD-VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred cccccccc-ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 73322222 2379999999999999999999999998876 4677777 6999999999999999999999999999999
Q ss_pred CceeeeecccccC
Q 043470 167 DKRIYVGRFIKKS 179 (629)
Q Consensus 167 g~~l~v~~~~~~~ 179 (629)
++.+.|..+..+.
T Consensus 166 nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 166 NRPITVSYAFKKD 178 (203)
T ss_pred CCceEEEEEEecC
Confidence 9999998776543
No 30
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=1.3e-25 Score=237.74 Aligned_cols=172 Identities=30% Similarity=0.424 Sum_probs=152.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC--eeeeee
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG--KMLRIS 86 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g--~~i~I~ 86 (629)
...++|||+|||.++++++|+++|+.||.|..+++++|..++.++|||||+|.+.++|++|++.||+..+.| .+|++.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 356799999999999999999999999999999999999899999999999999999999999999998877 678888
Q ss_pred ccCCCCCc------------------c-----------------------------------------------------
Q 043470 87 WSCRDPDA------------------R----------------------------------------------------- 95 (629)
Q Consensus 87 ~s~~~~~~------------------~----------------------------------------------------- 95 (629)
|+...... +
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 76422100 0
Q ss_pred -------------------cCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHH
Q 043470 96 -------------------KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANA 155 (629)
Q Consensus 96 -------------------~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~ 155 (629)
.....+|||+|||.++++++|+++|+.||+|.+|+|..|. +|.++|||||+|.+.++|..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0001259999999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHhCCCcccCceeeeecccccCC
Q 043470 156 AIENLNGTTVGDKRIYVGRFIKKSD 180 (629)
Q Consensus 156 Ai~~lng~~l~g~~l~v~~~~~~~~ 180 (629)
|++.+||..+.|+.|.|.+...+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999988766543
No 31
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=99.94 E-value=1.2e-27 Score=186.64 Aligned_cols=70 Identities=69% Similarity=0.957 Sum_probs=68.6
Q ss_pred ccccccCCCCHHHHHHHHHhhhhhhhhhcCCCCccchhhhhccCChHHHHHhcCChHHHHHHHHHHHHHH
Q 043470 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVL 604 (629)
Q Consensus 535 ~~~~~l~~~~~~~q~~~~ge~l~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 604 (629)
.++++|+++++++||++|||+|||+|.+++|++||||||||||||++||++||+|+++|++||+||++||
T Consensus 3 ~~~~~la~~~~~~qk~~LGe~Ly~~V~~~~p~~A~KITGMLLe~~~~ell~ll~~~~~L~~kv~eA~~vL 72 (72)
T PF00658_consen 3 LTASALASASPEQQKQILGERLYPLVQAIYPELAGKITGMLLEMDNSELLHLLEDPELLREKVQEAIEVL 72 (72)
T ss_dssp TSHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred chHHHHhcCCHHHHHHHHhccccHHHHHhCcchhHHHHHHHhcCCHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 5889999999999999999999999999999999999999999999999999999999999999999997
No 32
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=1.3e-25 Score=223.78 Aligned_cols=236 Identities=19% Similarity=0.227 Sum_probs=199.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSE-FKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~-~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
+....|++||.|||+++.=++|+++|.. .|+|+-|.++.|. .++++|||.|+|+++|.+++|++.||...++|++|.|
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 3445678999999999999999999965 5799999999995 6789999999999999999999999999999999999
Q ss_pred eccCCCCCcc----cCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhC
Q 043470 86 SWSCRDPDAR----KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN 161 (629)
Q Consensus 86 ~~s~~~~~~~----~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~ln 161 (629)
.-.+.....+ -....+.|+.++....-++-|...|+.-|......+..|.++.+++..++.|++.-.+..++..++
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 6443211111 112367899999999999999999999998888888889999999999999999999999988766
Q ss_pred CCcccCceeeeecccccCCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCH
Q 043470 162 GTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNP 241 (629)
Q Consensus 162 g~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~ 241 (629)
....-.+.+.. + ..+...++||.||...+..+.|.+.|.--|.|+++.+-.|+.|.++||+.++|.++
T Consensus 199 l~~~Flr~~h~--f----------~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hp 266 (608)
T KOG4212|consen 199 LSASFLRSLHI--F----------SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHP 266 (608)
T ss_pred chhhhhhhccC--C----------CCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecch
Confidence 65544444432 1 12334679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCe
Q 043470 242 DDARRALEAMNGSV 255 (629)
Q Consensus 242 e~A~~Av~~l~g~~ 255 (629)
-.|.+|+..+++..
T Consensus 267 veavqaIsml~~~g 280 (608)
T KOG4212|consen 267 VEAVQAISMLDRQG 280 (608)
T ss_pred HHHHHHHHhhccCC
Confidence 99999999888543
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=3.7e-26 Score=235.64 Aligned_cols=327 Identities=20% Similarity=0.258 Sum_probs=229.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
..+..|++++--|...+++.+|+++|+.+|+|..|+++.|.++++++|.|||+|.+.+....|+ .|.+..+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 3445578999999999999999999999999999999999999999999999999999999999 589999999999998
Q ss_pred ccCCCC--------Cccc---C-CcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHH
Q 043470 87 WSCRDP--------DARK---S-GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESA 153 (629)
Q Consensus 87 ~s~~~~--------~~~~---s-~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A 153 (629)
.+.... .... . ....++|+||..++++++|+.+|+.||.|..+.+..|. +|.++||||++|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 775321 1111 1 11228999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHhCCCcccCceeeeecccccCCCCCC-CCccccccccccCCCCCc-CHHHHHHHhcccCCeeEEEEeeCCCCCce
Q 043470 154 NAAIENLNGTTVGDKRIYVGRFIKKSDRVLP-SPAAKYTNLFMKNLDSDV-TEEHLVEKFSKFGKIASLLIARDENGTSR 231 (629)
Q Consensus 154 ~~Ai~~lng~~l~g~~l~v~~~~~~~~~~~~-~~~~~~~~v~V~nLp~~~-t~e~L~~~F~~~G~v~~~~v~~~~~g~s~ 231 (629)
..|++.+||..+.|+.+.|.....+.+.... .....+.-.=-.+|+.-. ...+|...|.+.-.+ .+..
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~---~~~s------- 403 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGR---SLPS------- 403 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCc---cccc-------
Confidence 9999999999999999999877665543311 000011111112222221 123333333322111 1110
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCC-----
Q 043470 232 GFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT----- 306 (629)
Q Consensus 232 g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t----- 306 (629)
+...|..++..+......+....+....+... ...-...+-|+.++|+=+.-|
T Consensus 404 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~--------------~p~~~i~t~C~lL~nMFdpstete~n 461 (549)
T KOG0147|consen 404 --------TAISALLLLAKLASAAQFNGVVRVRSVDPADA--------------SPAFDIPTQCLLLSNMFDPSTETEPN 461 (549)
T ss_pred --------hhhhHHHhccccchHHhhcCCcCccccCcccc--------------ccccCCccHHHHHhhcCCcccccCcc
Confidence 11112222222221111111011111110000 000013445677777643322
Q ss_pred -----HHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 307 -----DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 307 -----~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
.||+.+.+++||.|..|.|-.+ |-||.||.|.+.+.|..|+++|||.+|.||.|..+|-.
T Consensus 462 ~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 462 WDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred hhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 2788899999999998888765 44899999999999999999999999999999999864
No 34
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=230.46 Aligned_cols=258 Identities=26% Similarity=0.442 Sum_probs=218.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
.+..+.|+|+|||..+..++|.++|..||+|..|.+.+... -|+|.|.++.+|..|+..|.+..++.-++++.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~------~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGT------GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcccc------eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 35567899999999999999999999999999996653322 399999999999999999999999999998888
Q ss_pred cCCCC-------------------------------------C-----------cccCCcccccccccchhhhhHHHHHH
Q 043470 88 SCRDP-------------------------------------D-----------ARKSGVANLFVKNLIESIDNVRLQEM 119 (629)
Q Consensus 88 s~~~~-------------------------------------~-----------~~~s~~~~v~V~nLp~~it~~~L~~~ 119 (629)
...+. + ........+||+||+.+.+.++|.+.
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 75320 0 00000123999999999999999999
Q ss_pred HccCCCeeEeEEeeCCCCC----ccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccccCCCCC---CCCcccccc
Q 043470 120 FQNFGNIISCKVATSEDGK----SKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVL---PSPAAKYTN 192 (629)
Q Consensus 120 fs~fG~I~s~kv~~d~~g~----skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~~~~---~~~~~~~~~ 192 (629)
|+..|.|+++.|....++. |.|||||+|.+.++|+.|++.|+|..+.|+.|.|..+..+..... .......++
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tK 615 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTK 615 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccce
Confidence 9999999999998877554 569999999999999999999999999999999988762221111 112233689
Q ss_pred ccccCCCCCcCHHHHHHHhcccCCeeEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHH
Q 043470 193 LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARD-ENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE 271 (629)
Q Consensus 193 v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~-~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~ 271 (629)
|+|+|+|+..+..+++.+|..||.+.+|.+... ..+.++|||||.|.+..+|..|++.|.+..+-|+.|.+.|+.....
T Consensus 616 IlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 616 ILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred eeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 999999999999999999999999999999887 4677899999999999999999999999999999999999987665
No 35
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.92 E-value=5.3e-24 Score=211.20 Aligned_cols=349 Identities=20% Similarity=0.288 Sum_probs=257.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCC--ceecCeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH--TQLHGKMLR 84 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~--~~i~g~~i~ 84 (629)
...+++.|+++|||++++|++|-+++..||.|+.+.+.+.+. .||++|.+.+.|.--+..... -.+.|++|.
T Consensus 24 ~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~y 97 (492)
T KOG1190|consen 24 MAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIY 97 (492)
T ss_pred ccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCccee
Confidence 445789999999999999999999999999999999988755 699999999987663322111 156788888
Q ss_pred eeccCCC-------C----------------------Cc--c-------cCCcccccccccchhhhhHHHHHHHccCCCe
Q 043470 85 ISWSCRD-------P----------------------DA--R-------KSGVANLFVKNLIESIDNVRLQEMFQNFGNI 126 (629)
Q Consensus 85 I~~s~~~-------~----------------------~~--~-------~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I 126 (629)
|.||... + +. . .+..-.++|.|+-..++-+-|+.+|++||.|
T Consensus 98 iq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~V 177 (492)
T KOG1190|consen 98 IQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFV 177 (492)
T ss_pred ehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhccee
Confidence 8887511 0 00 0 0112247889999999999999999999999
Q ss_pred eEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccc-----------cCCCC-----CCCC----
Q 043470 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIK-----------KSDRV-----LPSP---- 186 (629)
Q Consensus 127 ~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~-----------~~~~~-----~~~~---- 186 (629)
+.+.-....++ -.|+|+|.+.+.|..|...|+|..|.+....+....+ .+.|. .+..
T Consensus 178 lKIiTF~Knn~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p 254 (492)
T KOG1190|consen 178 LKIITFTKNNG---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQP 254 (492)
T ss_pred EEEEEEecccc---hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcccc
Confidence 87655554433 3599999999999999999999888654433221110 01110 0000
Q ss_pred -------------------------------------cc--ccccccccCCCCC-cCHHHHHHHhcccCCeeEEEEeeCC
Q 043470 187 -------------------------------------AA--KYTNLFMKNLDSD-VTEEHLVEKFSKFGKIASLLIARDE 226 (629)
Q Consensus 187 -------------------------------------~~--~~~~v~V~nLp~~-~t~e~L~~~F~~~G~v~~~~v~~~~ 226 (629)
.. ....|.|.||..+ +|.+.|..+|+-||.|.++++..++
T Consensus 255 ~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk 334 (492)
T KOG1190|consen 255 SLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK 334 (492)
T ss_pred ccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC
Confidence 00 1245677787666 8999999999999999999998853
Q ss_pred CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHH-------HHHHHhhhhHHHHHHhh----------h
Q 043470 227 NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE-------REQILRHQFEEKRKERI----------L 289 (629)
Q Consensus 227 ~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~-------~~~~~~~~~~~~~~~~~----------~ 289 (629)
+.-|.|.+.+...|.-|++.|+|..+.|++|+|..+..... ++..+...+....-.+. .
T Consensus 335 ----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni 410 (492)
T KOG1190|consen 335 ----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNI 410 (492)
T ss_pred ----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCccccccccc
Confidence 24799999999999999999999999999999988754321 11112222222111111 1
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR-KPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g-~~l~v~~ 368 (629)
-.++.+|+..|+|.+++||+|++.|..-|...+..... ++.+-++.+.+.+.|+|..|+..+|...++. ..++|+|
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff---~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF---QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 23456899999999999999999999998765555443 2345599999999999999999999999875 4999999
Q ss_pred ccc
Q 043470 369 AQR 371 (629)
Q Consensus 369 a~~ 371 (629)
.+.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 864
No 36
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.5e-24 Score=202.86 Aligned_cols=170 Identities=30% Similarity=0.567 Sum_probs=154.7
Q ss_pred ccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEec
Q 043470 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265 (629)
Q Consensus 187 ~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~ 265 (629)
....+|+.|.-||..+|+++|+.+|...|+|++|++++|+ +|.+-||+||+|.++++|.+|+..|||..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCH
Q 043470 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSP 344 (629)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~ 344 (629)
+.+.+. ...+.+|||.+||+..|..||+.+|++||.|..-+|+.|. +|.+||.|||.|+..
T Consensus 118 ARPSs~------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 118 ARPSSD------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred ccCChh------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 976643 2356799999999999999999999999999888888876 899999999999999
Q ss_pred HHHHHHHHHhCCceeC--CeEEEEEeccchHH
Q 043470 345 EEASKAVNTFHGYMLH--RKPLYVAIAQRKED 374 (629)
Q Consensus 345 ~~A~~A~~~l~~~~~~--g~~l~v~~a~~k~~ 374 (629)
++|+.|++.|||..-. ..+|.|+|+.....
T Consensus 180 ~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred hHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 9999999999997654 47999999986543
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=5.7e-24 Score=233.18 Aligned_cols=178 Identities=27% Similarity=0.453 Sum_probs=152.9
Q ss_pred cccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecc
Q 043470 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266 (629)
Q Consensus 188 ~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a 266 (629)
...++|||+|||.++++++|+++|++||.|.+|.++.+. +++++|||||+|.+.++|.+|+. +++..+.|+.|.|..+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 346789999999999999999999999999999999885 78999999999999999999996 8999999999999876
Q ss_pred cchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC-CCeeeEEEEEeCCHH
Q 043470 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPE 345 (629)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~-g~~kg~~fV~f~~~~ 345 (629)
........... ..........++|||+||+..+|+++|+++|+.||.|.+|.++.+.. |+++|||||+|.+.+
T Consensus 166 ~~~~~~~~~~~------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 166 QAEKNRAAKAA------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred chhhhhhhhcc------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 54433221100 00000112357899999999999999999999999999999999874 689999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 346 EASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 346 ~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
+|.+|++.|||..|.|++|.|.|+...
T Consensus 240 ~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 240 EAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999999998743
No 38
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.1e-22 Score=189.26 Aligned_cols=187 Identities=28% Similarity=0.462 Sum_probs=158.3
Q ss_pred ccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCee---CCeEEEEec
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVI---GSKVLYAAR 265 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~---~g~~l~v~~ 265 (629)
..+++||+-|...-.|||++.+|..||+|++|.+.+..+|.++||+||.|.++.+|..|+..|||... ....|.|..
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 66899999999999999999999999999999999999999999999999999999999999998653 245677877
Q ss_pred ccchHHHHHHHhhhh-----------------------------------------------------------------
Q 043470 266 AQKKAEREQILRHQF----------------------------------------------------------------- 280 (629)
Q Consensus 266 a~~~~~~~~~~~~~~----------------------------------------------------------------- 280 (629)
+....||........
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 766555421100000
Q ss_pred ----------------------------------------------------------------------------HH--
Q 043470 281 ----------------------------------------------------------------------------EE-- 282 (629)
Q Consensus 281 ----------------------------------------------------------------------------~~-- 282 (629)
..
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00
Q ss_pred -----------------HHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCH
Q 043470 283 -----------------KRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSP 344 (629)
Q Consensus 283 -----------------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~ 344 (629)
..........||||||-.||.+..|.||.+.|-.||.|.+.||+.|+ +++||+||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00011124478999999999999999999999999999999999997 789999999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEeccchHHH
Q 043470 345 EEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375 (629)
Q Consensus 345 ~~A~~A~~~l~~~~~~g~~l~v~~a~~k~~~ 375 (629)
.+|+.||..|||..|+-|+|+|.+.++|+..
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999988753
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=3.2e-22 Score=178.64 Aligned_cols=170 Identities=31% Similarity=0.540 Sum_probs=151.9
Q ss_pred ccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEeccc
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~ 267 (629)
...+|||+||+..++++-|.++|-+.|.|.++.+.+|. +...+||||++|.+.++|.-|++-||...+-|+.|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45789999999999999999999999999999999997 67799999999999999999999999999999999998886
Q ss_pred chHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEE-EEEeeCCC-CCeeeEEEEEeCCHH
Q 043470 268 KKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITS-AKVMRDEK-GINKGFGFVCFSSPE 345 (629)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-~~v~~~~~-g~~kg~~fV~f~~~~ 345 (629)
... .....+.+|||+||++++++.-|-+.|+.||.+.+ -+++++++ |.++|||||.|.+.+
T Consensus 88 ~~~-----------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 88 AHQ-----------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred ccc-----------------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 211 12234578999999999999999999999997754 68888875 889999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEeccchHHH
Q 043470 346 EASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375 (629)
Q Consensus 346 ~A~~A~~~l~~~~~~g~~l~v~~a~~k~~~ 375 (629)
.+.+|+..+||..++++++.|+++.+++.+
T Consensus 151 asd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 999999999999999999999999876553
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=3.4e-21 Score=188.22 Aligned_cols=174 Identities=25% Similarity=0.519 Sum_probs=153.0
Q ss_pred cccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccc
Q 043470 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268 (629)
Q Consensus 190 ~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~ 268 (629)
-++|||+.+++++.++.|+..|.+||.|+++.+..|. +++.+||+||+|+-+|.|.-|++.+||..++||.|.|.+.+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 3689999999999999999999999999999999886 899999999999999999999999999999999999998766
Q ss_pred hHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCC-CeeeEEEEEeCCHHHH
Q 043470 269 KAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKG-INKGFGFVCFSSPEEA 347 (629)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g-~~kg~~fV~f~~~~~A 347 (629)
....+..+..-.+..+ .-.+|||..+..+.+|+||+..|+.||.|.+|.+.+++++ ..||||||+|.+..+-
T Consensus 193 mpQAQpiID~vqeeAk-------~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAK-------KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred CcccchHHHHHHHHHH-------hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 5444433322222111 1137999999999999999999999999999999999865 4899999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEecc
Q 043470 348 SKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 348 ~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..|+..||-..++|..|+|.-+-
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHHhhhcchhhcccceEeccccc
Confidence 99999999999999999998664
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=2.3e-21 Score=184.80 Aligned_cols=148 Identities=24% Similarity=0.498 Sum_probs=138.7
Q ss_pred ccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchH
Q 043470 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKA 270 (629)
Q Consensus 191 ~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~ 270 (629)
.++||+|||.+.++.+|+.+|++||.|..|.|+++ ||||..++...+..|+..||+..++|..|.|..+..|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 36899999999999999999999999999999965 99999999999999999999999999999998887652
Q ss_pred HHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHH
Q 043470 271 EREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKA 350 (629)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A 350 (629)
..+++|+|+||.+.++.++||..|++||.|.+|+|++| |+||.|+-.++|..|
T Consensus 76 --------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 76 --------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEA 128 (346)
T ss_pred --------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHH
Confidence 24578999999999999999999999999999999987 999999999999999
Q ss_pred HHHhCCceeCCeEEEEEeccch
Q 043470 351 VNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 351 ~~~l~~~~~~g~~l~v~~a~~k 372 (629)
+++|++.+|.|+++.|.+..++
T Consensus 129 ir~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred Hhcccccccccceeeeeeeccc
Confidence 9999999999999999998654
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=5.2e-21 Score=182.44 Aligned_cols=149 Identities=26% Similarity=0.446 Sum_probs=138.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCCCC
Q 043470 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRDP 92 (629)
Q Consensus 13 sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~~ 92 (629)
.|||||||..+++.+|+.+|++||+|++|.|+++ |+||-.++...|+.|+..|++..|+|..|.|.-|+.+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc-
Confidence 6999999999999999999999999999999986 9999999999999999999999999999999987755
Q ss_pred CcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeee
Q 043470 93 DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYV 172 (629)
Q Consensus 93 ~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v 172 (629)
.....+++|+||.+.+++++|+..|.+||++.+|+|.+ +|+||||+..++|..|++.|++..+.|+.+.|
T Consensus 75 ---sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------dy~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 75 ---SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred ---CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec-------ceeEEEEeeccchHHHHhcccccccccceeee
Confidence 33457899999999999999999999999999999975 59999999999999999999999999999999
Q ss_pred ecccccCC
Q 043470 173 GRFIKKSD 180 (629)
Q Consensus 173 ~~~~~~~~ 180 (629)
....++-.
T Consensus 145 q~stsrlr 152 (346)
T KOG0109|consen 145 QLSTSRLR 152 (346)
T ss_pred eeeccccc
Confidence 87766543
No 43
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.84 E-value=5.8e-19 Score=173.41 Aligned_cols=342 Identities=18% Similarity=0.229 Sum_probs=252.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHh--cCCceecCee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV--KNHTQLHGKM 82 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~--ln~~~i~g~~ 82 (629)
|-.+.++..|.|++|...++|++|.+.++.+|+|.-+.+...++ .|.|+|++.+.|+.|+.. -|...+.|+.
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCch
Confidence 44566778999999999999999999999999998887776543 699999999999999853 2344667888
Q ss_pred eeeeccCCCCCcc-------cCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHH
Q 043470 83 LRISWSCRDPDAR-------KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANA 155 (629)
Q Consensus 83 i~I~~s~~~~~~~-------~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~ 155 (629)
.-+.+|..+-..| -...--+.|-|--+.||.+-|+.+....|.|+.+.|... +| -.|.|+|++.+.|++
T Consensus 99 Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 99 ALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQR 174 (494)
T ss_pred hhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHH
Confidence 8888884332111 111222445677788999999999999999999888865 34 469999999999999
Q ss_pred HHHHhCCCcccCce--eeeecccccCC-----------------------------CCC---------------------
Q 043470 156 AIENLNGTTVGDKR--IYVGRFIKKSD-----------------------------RVL--------------------- 183 (629)
Q Consensus 156 Ai~~lng~~l~g~~--l~v~~~~~~~~-----------------------------~~~--------------------- 183 (629)
|...|||..|-... |.+...++..- |..
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred HHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcc
Confidence 99999998764432 33322211100 000
Q ss_pred --------------------------CCCccccccccccCCCCC-cCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEE
Q 043470 184 --------------------------PSPAAKYTNLFMKNLDSD-VTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236 (629)
Q Consensus 184 --------------------------~~~~~~~~~v~V~nLp~~-~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV 236 (629)
+........+.|-+|... ++.+.|+++|..||.|..+++++... |-+.|
T Consensus 255 g~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamV 330 (494)
T KOG1456|consen 255 GDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMV 330 (494)
T ss_pred cccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEE
Confidence 001112234667777665 67889999999999999999998654 47999
Q ss_pred EeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHH-----------------HHHhhhh--HHHHHHhhhhcccceee
Q 043470 237 NFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAERE-----------------QILRHQF--EEKRKERILKYKGSNVY 297 (629)
Q Consensus 237 ~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~-----------------~~~~~~~--~~~~~~~~~~~~~~~l~ 297 (629)
++-+..+.++|+..||+..+.|.+|.+..+....... .....++ .....+.....+++.|.
T Consensus 331 emgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLH 410 (494)
T KOG1456|consen 331 EMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLH 410 (494)
T ss_pred EcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeE
Confidence 9999999999999999999999999887764431110 0000111 11112223345688899
Q ss_pred eecCCCCCCHHHHHHHHhcCCC-eEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 043470 298 VKNIDDDVTDEELKAHFSQCGT-ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361 (629)
Q Consensus 298 V~nl~~~~t~~~l~~~F~~~G~-v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g 361 (629)
.-|.|..+|||.|.++|..-+. -++++|+..++-+| --|.++|++.++|..|+..+|...+.+
T Consensus 411 ffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserS-ssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 411 FFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERS-SSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred EecCCCccCHHHHHHHhhhcCCCcceEEeeccccccc-ccceeeeehHHHHHHHHHHhccccccC
Confidence 9999999999999999988764 47888887765443 368999999999999999999988854
No 44
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.82 E-value=3.1e-19 Score=182.29 Aligned_cols=338 Identities=18% Similarity=0.234 Sum_probs=239.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
.....--|.++.||+++|++||.++|+.++ |.++.+.|+ ++|..|-|||+|.+.+|+++||+. +-..+..+-|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEE
Confidence 345556899999999999999999999997 788666654 788999999999999999999974 7777777888887
Q ss_pred ccCCCC-------Cccc--CCcccccccccchhhhhHHHHHHHccCCCeeE-eEEeeCCCCCccceEEEEEcCHHHHHHH
Q 043470 87 WSCRDP-------DARK--SGVANLFVKNLIESIDNVRLQEMFQNFGNIIS-CKVATSEDGKSKGHGFVQFETEESANAA 156 (629)
Q Consensus 87 ~s~~~~-------~~~~--s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s-~kv~~d~~g~skg~afV~f~~~e~A~~A 156 (629)
-+..++ .... .....|.+++||.++++++|.++|+..--+.. +.+..+..+++.|-|||+|++.|.|+.|
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHH
Confidence 664332 1112 24567899999999999999999998754444 4466677899999999999999999999
Q ss_pred HHHhCCCcccCceeeeecccccC------------------C-----CC-------------------------------
Q 043470 157 IENLNGTTVGDKRIYVGRFIKKS------------------D-----RV------------------------------- 182 (629)
Q Consensus 157 i~~lng~~l~g~~l~v~~~~~~~------------------~-----~~------------------------------- 182 (629)
+.. +...+..+.|.|-.+.... + +.
T Consensus 162 l~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~ 240 (510)
T KOG4211|consen 162 LGR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYP 240 (510)
T ss_pred HHH-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCc
Confidence 975 4455555555543221000 0 00
Q ss_pred --C----------------CC---------------CccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCC
Q 043470 183 --L----------------PS---------------PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGT 229 (629)
Q Consensus 183 --~----------------~~---------------~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~ 229 (629)
. .. .......+...+||...++.+|.++|+..-.+ .+.+-...+|+
T Consensus 241 ~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr 319 (510)
T KOG4211|consen 241 SLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGR 319 (510)
T ss_pred cccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCc
Confidence 0 00 00001347778999999999999999987666 78888888999
Q ss_pred ceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHHH---------------------------------
Q 043470 230 SRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQIL--------------------------------- 276 (629)
Q Consensus 230 s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~--------------------------------- 276 (629)
..|-++|+|.++++|..|+.. ++..+..+.+....-..........
T Consensus 320 ~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~ 398 (510)
T KOG4211|consen 320 ATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGGGNGGGG 398 (510)
T ss_pred cCCcceeecccchhhHhhhcc-CCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccccccccCCCCCcc
Confidence 999999999999999999965 3334443333221110000000000
Q ss_pred hhh-----------------hHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEE
Q 043470 277 RHQ-----------------FEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFV 339 (629)
Q Consensus 277 ~~~-----------------~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV 339 (629)
+.. +....-.......--+|-.+.+|...++.++.++|..++ --.+.+..|..++..|-|-|
T Consensus 399 ~~~~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~~-~a~~~~~yd~~~~~~~~a~~ 477 (510)
T KOG4211|consen 399 RGSPYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPIR-PAQVELLYDHQFQRSGDARV 477 (510)
T ss_pred ccCCCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhcccccC-cccccccccccccccCceeE
Confidence 000 000000000111223477888899999999999999885 46778888888888899999
Q ss_pred EeCCHHHHHHHHH
Q 043470 340 CFSSPEEASKAVN 352 (629)
Q Consensus 340 ~f~~~~~A~~A~~ 352 (629)
.|.+.++++.|+.
T Consensus 478 ~~~~~~~~q~a~~ 490 (510)
T KOG4211|consen 478 IFYNRKDYQDALM 490 (510)
T ss_pred EEechhhhHHHHH
Confidence 9999999999996
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.79 E-value=3.6e-19 Score=178.02 Aligned_cols=247 Identities=19% Similarity=0.224 Sum_probs=208.5
Q ss_pred ccccccccchhhhhHHHHHHHc-cCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeeccccc
Q 043470 100 ANLFVKNLIESIDNVRLQEMFQ-NFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178 (629)
Q Consensus 100 ~~v~V~nLp~~it~~~L~~~fs-~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~ 178 (629)
+.+||.|||++....+|+++|. +.|.|..|.+..|+.|+++|+|.|+|++.|.+++|++.||...++|+.|.|+.....
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~ 124 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDE 124 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCch
Confidence 4599999999999999999996 578999999999999999999999999999999999999999999999999754433
Q ss_pred CCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 043470 179 SDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGS 258 (629)
Q Consensus 179 ~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g 258 (629)
..-..........++|+.++....-...|...|+--|.+..-.+.+|.++.+++..+++|++.-.+..++..++......
T Consensus 125 q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Fl 204 (608)
T KOG4212|consen 125 QRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFL 204 (608)
T ss_pred hhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhh
Confidence 22222233344578999999999999999999988887777778889999999999999998888888777655444444
Q ss_pred eEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEE
Q 043470 259 KVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGF 338 (629)
Q Consensus 259 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~f 338 (629)
+.+.. .. .+....+||.||+..+..+.|.+.|.--|.|+++.+-.|+.|.++||+.
T Consensus 205 r~~h~-f~-----------------------pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~v 260 (608)
T KOG4212|consen 205 RSLHI-FS-----------------------PPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAV 260 (608)
T ss_pred hhccC-CC-----------------------CCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeE
Confidence 43332 11 1122369999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 339 VCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 339 V~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
++|+.+-+|..||..+++.-+..++..+.+..
T Consensus 261 i~y~hpveavqaIsml~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 261 IEYDHPVEAVQAISMLDRQGLFDRRMTVRLDR 292 (608)
T ss_pred EEecchHHHHHHHHhhccCCCccccceeeccc
Confidence 99999999999999999888888888888843
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3.4e-18 Score=161.11 Aligned_cols=187 Identities=33% Similarity=0.516 Sum_probs=152.7
Q ss_pred CeeeeeeccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHH
Q 043470 80 GKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIEN 159 (629)
Q Consensus 80 g~~i~I~~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~ 159 (629)
+|+|.|... |.+.|....+++||+-|.+.-+++|++.+|..||.|.+|.+....+|.+||++||.|.+..+|..||+.
T Consensus 2 nrpiqvkpa--dsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 2 NRPIQVKPA--DSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred CCCcccccc--ccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHH
Confidence 456666543 334555577899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCc-ccC--ceeeeecccccCCCCC-----------------------------------------------------
Q 043470 160 LNGTT-VGD--KRIYVGRFIKKSDRVL----------------------------------------------------- 183 (629)
Q Consensus 160 lng~~-l~g--~~l~v~~~~~~~~~~~----------------------------------------------------- 183 (629)
|+|.. +.| ..+.|+.....++|..
T Consensus 80 LHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~ 159 (371)
T KOG0146|consen 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFA 159 (371)
T ss_pred hcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhH
Confidence 98844 333 3455544433332210
Q ss_pred --------------------------------------------------------------------------------
Q 043470 184 -------------------------------------------------------------------------------- 183 (629)
Q Consensus 184 -------------------------------------------------------------------------------- 183 (629)
T Consensus 160 ~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~v 239 (371)
T KOG0146|consen 160 AAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTV 239 (371)
T ss_pred HHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccc
Confidence
Q ss_pred ---------------------------------------CCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEee
Q 043470 184 ---------------------------------------PSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIAR 224 (629)
Q Consensus 184 ---------------------------------------~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~ 224 (629)
.....+.+|+||-.||.+..+.+|..+|-+||.|.+.++..
T Consensus 240 a~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv 319 (371)
T KOG0146|consen 240 ADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV 319 (371)
T ss_pred cchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee
Confidence 01112338999999999999999999999999999999888
Q ss_pred CC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccc
Q 043470 225 DE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268 (629)
Q Consensus 225 ~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~ 268 (629)
|+ +..+++|+||.|+++.+|..|+..+||..|+=+.|+|....+
T Consensus 320 DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 320 DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 75 889999999999999999999999999999988887755443
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.73 E-value=3.2e-18 Score=172.12 Aligned_cols=174 Identities=30% Similarity=0.502 Sum_probs=150.0
Q ss_pred ccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEeccc
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~ 267 (629)
+.+++||++|+++++++.|++.|+.||+|..|.+++|. +++++||+||+|.+.+....++.. ....+.++.+.+.++-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 56789999999999999999999999999999999996 799999999999999999888864 4567889998888886
Q ss_pred chHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHH
Q 043470 268 KKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEE 346 (629)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~ 346 (629)
+..+...... ......|||++|+..++++++++.|.+||.|..+.++.|. ..+++||+||.|.+++.
T Consensus 84 ~r~~~~~~~~------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 84 SREDQTKVGR------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDS 151 (311)
T ss_pred Cccccccccc------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccc
Confidence 6544322111 1145689999999999999999999999999999999986 67899999999999888
Q ss_pred HHHHHHHhCCceeCCeEEEEEeccchHHHH
Q 043470 347 ASKAVNTFHGYMLHRKPLYVAIAQRKEDRQ 376 (629)
Q Consensus 347 A~~A~~~l~~~~~~g~~l~v~~a~~k~~~~ 376 (629)
+.+++. ..-..|+++.+.|..|.+|+...
T Consensus 152 Vdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 152 VDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cceecc-cceeeecCceeeEeeccchhhcc
Confidence 888874 67788999999999999988764
No 48
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.72 E-value=1.2e-17 Score=173.01 Aligned_cols=182 Identities=23% Similarity=0.399 Sum_probs=153.2
Q ss_pred CccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEe
Q 043470 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264 (629)
Q Consensus 186 ~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~ 264 (629)
.....+++|+-.+....+.-+|.++|+.+|.|..+.++.|. +++++|.+||+|.+.++...|+ .|.|..+.|..|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 34456789999999999999999999999999999999886 8999999999999999999999 689999999999998
Q ss_pred cccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCC
Q 043470 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSS 343 (629)
Q Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~ 343 (629)
.......+.+.....+.. .....+...|||+||-.++++++|+.+|+.||.|+.|.++.|. +|++||||||+|.+
T Consensus 254 ~sEaeknr~a~~s~a~~~----k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQG----KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred ccHHHHHHHHhccccccc----cccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 765544442222111110 0111122339999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 344 PEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 344 ~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
.++|.+|+..|||.++.|+.|+|.....+
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEEeeee
Confidence 99999999999999999999999987644
No 49
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.72 E-value=1.4e-16 Score=163.02 Aligned_cols=264 Identities=20% Similarity=0.298 Sum_probs=198.9
Q ss_pred CcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccc
Q 043470 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIK 177 (629)
Q Consensus 98 ~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~ 177 (629)
....|.+++||+++|.++|+++|+.++ |.++++.+ .+|+..|-|||+|+++|++.+|+++ +.+.+..+.|.|-....
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCC
Confidence 345688899999999999999999984 66644433 3699999999999999999999984 77888888888865532
Q ss_pred cC-----CCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeE-EEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 043470 178 KS-----DRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS-LLIARDENGTSRGFGFVNFDNPDDARRALEAM 251 (629)
Q Consensus 178 ~~-----~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~-~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l 251 (629)
.. +...+........|.+.+||+.++++||.++|+..-.|.. +.+..+..+++.|-+||+|++.+.|++|+..
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r- 164 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR- 164 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-
Confidence 21 1111222235567899999999999999999998877766 5567777889999999999999999999976
Q ss_pred CCCeeCCeEEEEecccchHHHHHHHhh--------hhHH------------HHH--------------------------
Q 043470 252 NGSVIGSKVLYAARAQKKAEREQILRH--------QFEE------------KRK-------------------------- 285 (629)
Q Consensus 252 ~g~~~~g~~l~v~~a~~~~~~~~~~~~--------~~~~------------~~~-------------------------- 285 (629)
|...++.+.|.|.++.....+...... .++. .+.
T Consensus 165 hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d 244 (510)
T KOG4211|consen 165 HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQD 244 (510)
T ss_pred HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccc
Confidence 677888999999888665554433000 0000 000
Q ss_pred -----------------H----h--------hhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeE
Q 043470 286 -----------------E----R--------ILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF 336 (629)
Q Consensus 286 -----------------~----~--------~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~ 336 (629)
+ + .....+..++.++||...++.+|.++|+..-. ..|.|-..++|+..|-
T Consensus 245 ~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p-~~v~i~ig~dGr~TGE 323 (510)
T KOG4211|consen 245 YGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNP-YRVHIEIGPDGRATGE 323 (510)
T ss_pred cccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCc-eeEEEEeCCCCccCCc
Confidence 0 0 00112256889999999999999999998644 4888888899999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 337 ~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
|+|+|.|.++|..|+. -++..++.+.+..-
T Consensus 324 AdveF~t~edav~Ams-kd~anm~hrYVElF 353 (510)
T KOG4211|consen 324 ADVEFATGEDAVGAMG-KDGANMGHRYVELF 353 (510)
T ss_pred ceeecccchhhHhhhc-cCCcccCcceeeec
Confidence 9999999999999995 45555555555443
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=1.5e-16 Score=142.42 Aligned_cols=150 Identities=20% Similarity=0.346 Sum_probs=127.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
..+.+++|||||||.++-|.+|.++|.+||.|..|.+.. ....-+||||+|+++.||+.|+.--++..+.|-.++|.
T Consensus 2 ~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~---r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 2 SGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN---RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred CCcccceEEecCCCcchhhccHHHHHhhhcceEEEEecc---CCCCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 356789999999999999999999999999999998742 33457899999999999999999999999999999999
Q ss_pred ccCCCC------------------------CcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccce
Q 043470 87 WSCRDP------------------------DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGH 142 (629)
Q Consensus 87 ~s~~~~------------------------~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~ 142 (629)
|.+.-- ...+-....|.|.+||++-+.++|++.+...|.|-...+..| |+
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~ 152 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GV 152 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cc
Confidence 987321 011112346999999999999999999999999987777765 58
Q ss_pred EEEEEcCHHHHHHHHHHhCCCcc
Q 043470 143 GFVQFETEESANAAIENLNGTTV 165 (629)
Q Consensus 143 afV~f~~~e~A~~Ai~~lng~~l 165 (629)
+.|+|...|+-.-|+.+|....+
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeeeehhhHHHHHHhhccccc
Confidence 99999999999999998876543
No 51
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=2.8e-16 Score=165.51 Aligned_cols=253 Identities=22% Similarity=0.373 Sum_probs=196.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcC-----------C-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCC
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEF-----------K-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~-----------G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~ 75 (629)
.+..+.+||++++..++|+....+|+.- | .|+++.++.+++ +||++|.+.++|+.|+. +++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~n------fa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKN------FAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccccc------ceeEEecCCCchhhhhc-ccc
Confidence 3445799999999999999999999765 4 588888887654 99999999999999995 788
Q ss_pred ceecCeeeeeeccCCCC-----------------Cc----ccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeC
Q 043470 76 TQLHGKMLRISWSCRDP-----------------DA----RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS 134 (629)
Q Consensus 76 ~~i~g~~i~I~~s~~~~-----------------~~----~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d 134 (629)
..+.|.++++.-.+... .. .-.....++|++|+..+++..+.++...||++....+..|
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d 324 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD 324 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecc
Confidence 88899888775433211 00 1112356999999999999999999999999999999998
Q ss_pred C-CCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccccCCCCCCCCc------------------cccccccc
Q 043470 135 E-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPA------------------AKYTNLFM 195 (629)
Q Consensus 135 ~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~~~~~~~~------------------~~~~~v~V 195 (629)
. +|.++||||.+|.+......|+..+||+.+.++.+.|............... .....+.+
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L 404 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCL 404 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhh
Confidence 8 6999999999999999999999999999999999998766543332111100 11112222
Q ss_pred cCCCC--C-cC-------HHHHHHHhcccCCeeEEEEeeC-C---CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEE
Q 043470 196 KNLDS--D-VT-------EEHLVEKFSKFGKIASLLIARD-E---NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVL 261 (629)
Q Consensus 196 ~nLp~--~-~t-------~e~L~~~F~~~G~v~~~~v~~~-~---~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l 261 (629)
.|+-. + .+ -|+++..|++||.|.+|.+.+. . .....|..||+|.+.+++++|.++|+|..++++.+
T Consensus 405 ~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 405 TNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred hhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 22210 0 01 2455667889999999999887 2 35667789999999999999999999999999998
Q ss_pred EEeccc
Q 043470 262 YAARAQ 267 (629)
Q Consensus 262 ~v~~a~ 267 (629)
...+..
T Consensus 485 vtsYyd 490 (500)
T KOG0120|consen 485 VASYYD 490 (500)
T ss_pred EEEecC
Confidence 877654
No 52
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.70 E-value=3.1e-17 Score=165.05 Aligned_cols=173 Identities=28% Similarity=0.480 Sum_probs=155.0
Q ss_pred CcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeeccc
Q 043470 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176 (629)
Q Consensus 98 ~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~ 176 (629)
..+.+||++|+.+++++.|++.|+.||.|..|.++.|. +++++||+||+|++.+...+++.. ....+.++.|.+....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 46889999999999999999999999999999999999 899999999999999999999973 5577899999999888
Q ss_pred ccCCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCe
Q 043470 177 KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSV 255 (629)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~ 255 (629)
++.+............|||+.|+.+++++++++.|++||.|..+.++.|. +.+.+||+||.|.+.+++.+++. ..-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 88776655555567799999999999999999999999999888888875 78999999999999999999886 46778
Q ss_pred eCCeEEEEecccchHHH
Q 043470 256 IGSKVLYAARAQKKAER 272 (629)
Q Consensus 256 ~~g~~l~v~~a~~~~~~ 272 (629)
+.++.+.|.+|.++...
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999888653
No 53
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=2.4e-16 Score=143.32 Aligned_cols=85 Identities=31% Similarity=0.507 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
..+++|||+|||+++||++|+++|++||.|.+|+|++|..|++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 043470 89 CRDPD 93 (629)
Q Consensus 89 ~~~~~ 93 (629)
...+.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76544
No 54
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=2.2e-16 Score=166.22 Aligned_cols=267 Identities=19% Similarity=0.340 Sum_probs=200.8
Q ss_pred cccccccccchhhhhHHHHHHHccC-----------C-CeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCccc
Q 043470 99 VANLFVKNLIESIDNVRLQEMFQNF-----------G-NIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG 166 (629)
Q Consensus 99 ~~~v~V~nLp~~it~~~L~~~fs~f-----------G-~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~ 166 (629)
...++|.+++..++++.+..+|..- | .+++|.+.. .+.++|++|.+.+.|..++. +++..+.
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhhc-ccchhhC
Confidence 4568999999999999999888763 2 367776654 57899999999999999997 6888888
Q ss_pred CceeeeecccccCCC-----------------CCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CC
Q 043470 167 DKRIYVGRFIKKSDR-----------------VLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NG 228 (629)
Q Consensus 167 g~~l~v~~~~~~~~~-----------------~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g 228 (629)
|..+.+......... ...........+||++|+..+++.++.++.+.||.+....+..+. +|
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 887766443222111 011222344679999999999999999999999999999888775 68
Q ss_pred CceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHHHhhhhH------HHHHHhhhhcccceeeeecCC
Q 043470 229 TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFE------EKRKERILKYKGSNVYVKNID 302 (629)
Q Consensus 229 ~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~V~nl~ 302 (629)
.++||+|.+|.+......|++.|||..++++.|.|.++............... ..............|-+.|+=
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~V 408 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVV 408 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcC
Confidence 99999999999999999999999999999999999988665443332222000 000011222233334444431
Q ss_pred C--C-CCH-------HHHHHHHhcCCCeEEEEEeeC-CC---CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 303 D--D-VTD-------EELKAHFSQCGTITSAKVMRD-EK---GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 303 ~--~-~t~-------~~l~~~F~~~G~v~~~~v~~~-~~---g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
. + .+| |+++..|++||.|.+|.+.++ .+ ...-|..||+|.+.+++++|.++|+|+.|+++.+..+|
T Consensus 409 t~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 409 TPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred CHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 1 1 111 667788899999999999988 32 33667899999999999999999999999999999998
Q ss_pred ccc
Q 043470 369 AQR 371 (629)
Q Consensus 369 a~~ 371 (629)
-..
T Consensus 489 yde 491 (500)
T KOG0120|consen 489 YDE 491 (500)
T ss_pred cCH
Confidence 753
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.67 E-value=8.7e-16 Score=143.46 Aligned_cols=160 Identities=22% Similarity=0.373 Sum_probs=134.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHH----HHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCe
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFD----AFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGK 81 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~----~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~ 81 (629)
.+-.++.||||.||+..+.-++|+. +|++||.|++|.+++ |.+.+|.|||.|.+.+.|..|++.|++..+.|+
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK 80 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGK 80 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCc
Confidence 3445566999999999999988766 999999999999986 667899999999999999999999999999999
Q ss_pred eeeeeccCCCCCcc------------------------------------------------cCCcccccccccchhhhh
Q 043470 82 MLRISWSCRDPDAR------------------------------------------------KSGVANLFVKNLIESIDN 113 (629)
Q Consensus 82 ~i~I~~s~~~~~~~------------------------------------------------~s~~~~v~V~nLp~~it~ 113 (629)
+++|.|++.+.+.- ......+|+.|||...+.
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~ 160 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESES 160 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhH
Confidence 99999998553211 122345899999999999
Q ss_pred HHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCccc-Cceeee
Q 043470 114 VRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG-DKRIYV 172 (629)
Q Consensus 114 ~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~-g~~l~v 172 (629)
+.+.++|..|.-...+.+... .++.|||+|.++..|..|...+.+..+. ...+.+
T Consensus 161 e~l~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 161 EMLSDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred HHHHHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 999999999998888777764 4678999999999999999999987775 444444
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.67 E-value=1.6e-16 Score=144.54 Aligned_cols=83 Identities=25% Similarity=0.508 Sum_probs=77.9
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
...+++|||+||++++|+++|+++|++||.|.+|+++.|. +++++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999986 789999999999999999999999999999999999999
Q ss_pred ccch
Q 043470 369 AQRK 372 (629)
Q Consensus 369 a~~k 372 (629)
+..+
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 9754
No 57
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.64 E-value=1.3e-14 Score=144.94 Aligned_cols=244 Identities=20% Similarity=0.274 Sum_probs=187.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee--eeeccC-
Q 043470 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML--RISWSC- 89 (629)
Q Consensus 13 sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i--~I~~s~- 89 (629)
+++|+|+-..++-+-|+.+|++||.|..|..+....+ -.|.|+|.+.+.|..|...|++..|..-.| ||.||+
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~----FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNG----FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccc----hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 7789999999999999999999999999988765332 369999999999999999999998887544 666664
Q ss_pred ------------CC---CCccc---------------------------------------------CCcccccccccch
Q 043470 90 ------------RD---PDARK---------------------------------------------SGVANLFVKNLIE 109 (629)
Q Consensus 90 ------------~~---~~~~~---------------------------------------------s~~~~v~V~nLp~ 109 (629)
|| +.+.- +....|.|.||..
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 11 00000 0123456667664
Q ss_pred -hhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccccCCCC------
Q 043470 110 -SIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRV------ 182 (629)
Q Consensus 110 -~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~~~------ 182 (629)
.+|.+.|+-+|..||+|..++|...+ +-.|+|++.+...|.-|++.|+|..+.|++|+|...+...-..
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~ 383 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQE 383 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCc
Confidence 58999999999999999999999864 4679999999999999999999999999999997654321100
Q ss_pred ---C------------C-CCc-------cccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeC
Q 043470 183 ---L------------P-SPA-------AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFD 239 (629)
Q Consensus 183 ---~------------~-~~~-------~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~ 239 (629)
. . ... +...++...|+|.++++|++++.|..-|-..+....- ++.+.++++.++
T Consensus 384 d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff---~kd~kmal~q~~ 460 (492)
T KOG1190|consen 384 DQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF---QKDRKMALPQLE 460 (492)
T ss_pred cccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---CCCcceeecccC
Confidence 0 0 001 1223567899999999999999998887654433222 245669999999
Q ss_pred CHHHHHHHHHHhCCCeeCCe-EEEEeccc
Q 043470 240 NPDDARRALEAMNGSVIGSK-VLYAARAQ 267 (629)
Q Consensus 240 ~~e~A~~Av~~l~g~~~~g~-~l~v~~a~ 267 (629)
+.|+|..|+-.++...++.. .|+|..++
T Consensus 461 sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 461 SVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred ChhHhhhhccccccccCCCCceEEEEeec
Confidence 99999999999988887655 78887764
No 58
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.61 E-value=2.6e-14 Score=141.45 Aligned_cols=272 Identities=18% Similarity=0.211 Sum_probs=196.6
Q ss_pred cccccccchhhhhHHHHHHHccCCCeeEeEEeeC-CCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccccC
Q 043470 101 NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATS-EDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179 (629)
Q Consensus 101 ~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d-~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~ 179 (629)
-+..++|++..++.++..+|+...-..-...++. ..|...|.+.|.|-+.|.-..|++. +.+.+.++.+.|-......
T Consensus 62 vvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ge~ 140 (508)
T KOG1365|consen 62 VVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATGEE 140 (508)
T ss_pred EEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCchh
Confidence 3556799999999999999986532222222222 3677889999999999999999985 5566777777664432221
Q ss_pred CCC----------CCCCccccccccccCCCCCcCHHHHHHHhccc----CCeeEEEEeeCCCCCceeEEEEEeCCHHHHH
Q 043470 180 DRV----------LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKF----GKIASLLIARDENGTSRGFGFVNFDNPDDAR 245 (629)
Q Consensus 180 ~~~----------~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~----G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~ 245 (629)
-.. ..-...+.--|.+++||++.++.++.++|.+. |....+.+++..+|+.+|-+||.|..+++|.
T Consensus 141 f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq 220 (508)
T KOG1365|consen 141 FLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQ 220 (508)
T ss_pred heEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHH
Confidence 110 01111234457789999999999999999632 2455778888889999999999999999999
Q ss_pred HHHHHhCCCeeCCeEEEEecccchHHHHHHHhhhhHHHHH--------------HhhhhcccceeeeecCCCCCCHHHHH
Q 043470 246 RALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRK--------------ERILKYKGSNVYVKNIDDDVTDEELK 311 (629)
Q Consensus 246 ~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~V~nl~~~~t~~~l~ 311 (629)
.|+.+ |...++.|.|.+.++... +-.+.+.+.....-- .........+|.+++||++.+.|||.
T Consensus 221 ~aL~k-hrq~iGqRYIElFRSTaa-Evqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL 298 (508)
T KOG1365|consen 221 FALRK-HRQNIGQRYIELFRSTAA-EVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDIL 298 (508)
T ss_pred HHHHH-HHHHHhHHHHHHHHHhHH-HHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHH
Confidence 99986 566677777777665443 333333332211000 00001124679999999999999999
Q ss_pred HHHhcCC-CeEE--EEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccchHHH
Q 043470 312 AHFSQCG-TITS--AKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR 375 (629)
Q Consensus 312 ~~F~~~G-~v~~--~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~~~ 375 (629)
++|..|. .|.. |.+..+..|+..|-|||.|.+.|+|..|....|++...+|.|.|--+.-.+..
T Consensus 299 ~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln 365 (508)
T KOG1365|consen 299 DFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELN 365 (508)
T ss_pred HHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHH
Confidence 9999996 4444 88899999999999999999999999999998888877888888777655544
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=2e-14 Score=114.20 Aligned_cols=70 Identities=44% Similarity=0.722 Sum_probs=68.0
Q ss_pred eeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 043470 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365 (629)
Q Consensus 296 l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 365 (629)
|||+|||.++|+++|+++|+.||.|..++++.+..+.++|||||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988899999999999999999999999999999999985
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.55 E-value=4.2e-14 Score=132.29 Aligned_cols=175 Identities=25% Similarity=0.392 Sum_probs=142.9
Q ss_pred cccccccCCCCCcCHHHHHH----HhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEec
Q 043470 190 YTNLFMKNLDSDVTEEHLVE----KFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265 (629)
Q Consensus 190 ~~~v~V~nLp~~~t~e~L~~----~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~ 265 (629)
+.++||.||...+..++|+. +|++||.|..|...+ +.+.||-|||.|.+.+.|..|+..|+|..+-|+.+.+.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 44899999999999999988 999999998877764 568999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhhhhHHHHH----H----------------------------hhhhcccceeeeecCCCCCCHHHHHHH
Q 043470 266 AQKKAEREQILRHQFEEKRK----E----------------------------RILKYKGSNVYVKNIDDDVTDEELKAH 313 (629)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~----~----------------------------~~~~~~~~~l~V~nl~~~~t~~~l~~~ 313 (629)
|..++.-.......+..... + .....+...||+.|||.+++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 98775433221100000000 0 011345678999999999999999999
Q ss_pred HhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEecc
Q 043470 314 FSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH-RKPLYVAIAQ 370 (629)
Q Consensus 314 F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~ 370 (629)
|..|...+.++++.. -++.|||+|.+...|..|.+.+.+..+- ...+.|.+++
T Consensus 167 f~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999876 3568999999999999999999998886 7888888764
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=2.9e-14 Score=113.27 Aligned_cols=70 Identities=43% Similarity=0.766 Sum_probs=67.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 14 LyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
|||+|||.++|+++|+++|+.||.|..+.+.++ .++++.|||||.|.+.++|++|++.|++..+.|+.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 7888999999999999999999999999999999986
No 62
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.53 E-value=1.9e-13 Score=134.22 Aligned_cols=179 Identities=20% Similarity=0.306 Sum_probs=140.2
Q ss_pred cccccccccCCCCCcCHHHHHHHhcccCCee--------EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 043470 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIA--------SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSK 259 (629)
Q Consensus 188 ~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~--------~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~ 259 (629)
...++|||.|||.++|.+++.++|+++|.|. .|++.++..|+.+|-|.++|-..++..-|+..|++..+.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3457799999999999999999999999875 37888899999999999999999999999999999999999
Q ss_pred EEEEecccchHH--HHHHHh--------hhhHHHH-------H---HhhhhcccceeeeecCCC----CCC-------HH
Q 043470 260 VLYAARAQKKAE--REQILR--------HQFEEKR-------K---ERILKYKGSNVYVKNIDD----DVT-------DE 308 (629)
Q Consensus 260 ~l~v~~a~~~~~--~~~~~~--------~~~~~~~-------~---~~~~~~~~~~l~V~nl~~----~~t-------~~ 308 (629)
.|.|.+|+-... .....+ .+..... . .....-..++|.++|+=. ..+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999999843211 100000 0000000 0 011222457888999832 122 37
Q ss_pred HHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 309 ELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 309 ~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
+|++.+++||.|.+|.|... .+.|.+-|.|.+.++|..||+.|+|+.|+||.|.-++.
T Consensus 292 dl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 88899999999999999754 45689999999999999999999999999999987775
No 63
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.6e-14 Score=120.62 Aligned_cols=89 Identities=21% Similarity=0.403 Sum_probs=82.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
-+.+++||||||...++|++|+++|+++|+|..|.+=-|+.+....|||||+|.+.+||+.||.-++++.+..++|+|-|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccc
Q 043470 88 SCRDPDARK 96 (629)
Q Consensus 88 s~~~~~~~~ 96 (629)
..--.+.++
T Consensus 113 D~GF~eGRQ 121 (153)
T KOG0121|consen 113 DAGFVEGRQ 121 (153)
T ss_pred cccchhhhh
Confidence 875544333
No 64
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.50 E-value=5.7e-13 Score=123.10 Aligned_cols=231 Identities=17% Similarity=0.249 Sum_probs=136.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceec---Ceeeee
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVC-KDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLH---GKMLRI 85 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~-rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~---g~~i~I 85 (629)
.-|+|||.+||.|+...+||.+|..|---++..+. .++...-.+-+|||.|.+..+|..|+..||+..|. +..++|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 35899999999999999999999998544444443 22222223479999999999999999999999875 889999
Q ss_pred eccCCCCCcccCCcc-------cccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHH
Q 043470 86 SWSCRDPDARKSGVA-------NLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIE 158 (629)
Q Consensus 86 ~~s~~~~~~~~s~~~-------~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~ 158 (629)
.+++.+....+.... -+-+.+-..........+.-+..-+-.++. +-+.....---.+...+.-..+..
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~----~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQ----EPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccC----CccccccCCCccccchhhhhhhhh
Confidence 988866543332211 111111111111000111000000000000 001000000002222222222222
Q ss_pred HhCCCcccCceeeeecccccCCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEe
Q 043470 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238 (629)
Q Consensus 159 ~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F 238 (629)
+.-... + .-...+........+.++||-||..++++++|+.+|+.|.....+++.. +.| ...+|++|
T Consensus 189 ~~P~a~--a--------~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g--~~vaf~~~ 255 (284)
T KOG1457|consen 189 KAPSAN--A--------HLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGG--MPVAFADF 255 (284)
T ss_pred cCCccc--c--------hhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCC--cceEeecH
Confidence 111100 0 0011112223345678899999999999999999999998776665543 333 34899999
Q ss_pred CCHHHHHHHHHHhCCCeeC
Q 043470 239 DNPDDARRALEAMNGSVIG 257 (629)
Q Consensus 239 ~~~e~A~~Av~~l~g~~~~ 257 (629)
++.+.|..|+..|.|..+.
T Consensus 256 ~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 256 EEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHHHHHHHhhcceec
Confidence 9999999999999887653
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=7.5e-14 Score=131.01 Aligned_cols=81 Identities=31% Similarity=0.484 Sum_probs=77.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCC
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR 90 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~ 90 (629)
+++|.|.||+.+++|.+|.++|.+||+|..|.|.+|+.||.++|||||.|.+.+||.+||+.||+.-+..-.++|.||..
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKP 268 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q 043470 91 D 91 (629)
Q Consensus 91 ~ 91 (629)
.
T Consensus 269 ~ 269 (270)
T KOG0122|consen 269 S 269 (270)
T ss_pred C
Confidence 3
No 66
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=3.8e-14 Score=132.63 Aligned_cols=78 Identities=27% Similarity=0.467 Sum_probs=71.4
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
.-++|||++|+|++.+|+|+++|++||+|.++.|+.|+ +|+|||||||+|.+.++|++|++..| -.|+||+..|.+|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 34689999999999999999999999999999999997 79999999999999999999998544 57899999999885
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=2.2e-13 Score=108.32 Aligned_cols=70 Identities=31% Similarity=0.665 Sum_probs=65.7
Q ss_pred eeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 043470 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365 (629)
Q Consensus 296 l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 365 (629)
|||+|||+++++++|+++|+.||.|..+++..+++|.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999998899999999999999999999999999999999985
No 68
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.48 E-value=7.4e-13 Score=130.81 Aligned_cols=260 Identities=20% Similarity=0.258 Sum_probs=190.8
Q ss_pred CcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHh--CCCcccCceeeeecc
Q 043470 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENL--NGTTVGDKRIYVGRF 175 (629)
Q Consensus 98 ~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~l--ng~~l~g~~l~v~~~ 175 (629)
..--|.|++|-..+++.+|.+.++.||.|.-+..+. .+..++|+|++.+.|..++... +...+.|..-.+...
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P-----~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP-----HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEecc-----ccceeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 345688999999999999999999999997666554 5678999999999999998642 334456666555555
Q ss_pred cccC-CCCCCCCcccccc--ccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 043470 176 IKKS-DRVLPSPAAKYTN--LFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252 (629)
Q Consensus 176 ~~~~-~~~~~~~~~~~~~--v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~ 252 (629)
++.. +|...+....... +.|-|--..+|-+-|..++...|.|..+.|++. + ---|.|+|++.+.|++|.+.||
T Consensus 105 tsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-n---gVQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 105 TSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-N---GVQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred hhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-c---ceeeEEeechhHHHHHHHhhcc
Confidence 3332 2222222222222 334565666899999999999999999999875 3 2369999999999999999999
Q ss_pred CCee--CCeEEEEecccchHH---------HHHHHh---hhh--------------------HHHH--------------
Q 043470 253 GSVI--GSKVLYAARAQKKAE---------REQILR---HQF--------------------EEKR-------------- 284 (629)
Q Consensus 253 g~~~--~g~~l~v~~a~~~~~---------~~~~~~---~~~--------------------~~~~-------------- 284 (629)
|..| +-..|++.++.+... ++..+. ..+ +...
T Consensus 181 GADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p 260 (494)
T KOG1456|consen 181 GADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGP 260 (494)
T ss_pred cccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCC
Confidence 9876 345666766644211 100000 000 0000
Q ss_pred ------------HH------hhhhcccceeeeecCCCC-CCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHH
Q 043470 285 ------------KE------RILKYKGSNVYVKNIDDD-VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPE 345 (629)
Q Consensus 285 ------------~~------~~~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~ 345 (629)
.. .....+++.+.|-+|+.. ++.+.|+.+|..||.|+.|++|+.+. |.|.|++.|..
T Consensus 261 ~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~ 336 (494)
T KOG1456|consen 261 PHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAY 336 (494)
T ss_pred CCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHH
Confidence 00 011235788999999875 78899999999999999999999754 58999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEecc
Q 043470 346 EASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 346 ~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
+.++|++.||+..+.|.+|.|.+++
T Consensus 337 aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 337 AVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred HHHHHHHHhccCccccceEEEeecc
Confidence 9999999999999999999998875
No 69
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=5.2e-13 Score=119.84 Aligned_cols=172 Identities=22% Similarity=0.361 Sum_probs=132.6
Q ss_pred ccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccc
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~ 268 (629)
..+.|||+|||.++.+.+|.++|-+||.|..|.+.... ..-+|+||+|++..+|..|+..-+|..++|..|.|..+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 45789999999999999999999999999999887543 2345999999999999999999999999999999988765
Q ss_pred hHHHHHHHhhhhHHH---------HHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEE
Q 043470 269 KAEREQILRHQFEEK---------RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFV 339 (629)
Q Consensus 269 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV 339 (629)
-...... ...+... ..-...+-..-.|.|.+||.+-+-.||+++..+-|.|....+.+| |++.|
T Consensus 83 gr~s~~~-~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV 155 (241)
T KOG0105|consen 83 GRSSSDR-RGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVV 155 (241)
T ss_pred CCccccc-ccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceee
Confidence 4211000 0000000 000001112346999999999999999999999999999999887 48999
Q ss_pred EeCCHHHHHHHHHHhCCceeC--CeEEEEEec
Q 043470 340 CFSSPEEASKAVNTFHGYMLH--RKPLYVAIA 369 (629)
Q Consensus 340 ~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~a 369 (629)
+|...|+.+-|+..|....+. |...++.+.
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred eeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 999999999999999876664 445544443
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=9.6e-14 Score=135.30 Aligned_cols=82 Identities=29% Similarity=0.530 Sum_probs=76.3
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
+....+|||.|||...-|-||+.+|.+||.|.+|+|+.++.| |||||||+|++.++|++|.++|||..|.||+|.|..|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 334568999999999999999999999999999999999877 8999999999999999999999999999999999998
Q ss_pred cch
Q 043470 370 QRK 372 (629)
Q Consensus 370 ~~k 372 (629)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 643
No 71
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.44 E-value=4.6e-13 Score=106.52 Aligned_cols=70 Identities=36% Similarity=0.660 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 14 LyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
|||+|||+++++++|+++|+.+|.|..|++.+++. ++++|+|||+|.+.++|++|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999998999999875
No 72
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.44 E-value=1.4e-12 Score=129.32 Aligned_cols=253 Identities=17% Similarity=0.258 Sum_probs=183.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLA-SVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~-si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
.+..+..++||+..+..+|..+|....-.. .+-+|.. ..++..|.|.|.|.+.+.-+.|++. +...+.++.|.|.-+
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~-~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka 136 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLN-AQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKA 136 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeeh-hhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeecc
Confidence 345778899999999999999998764333 2334443 4566779999999999999999975 666677888888765
Q ss_pred CCCC--------------CcccCCcccccccccchhhhhHHHHHHHccC----CCeeEeEEeeCCCCCccceEEEEEcCH
Q 043470 89 CRDP--------------DARKSGVANLFVKNLIESIDNVRLQEMFQNF----GNIISCKVATSEDGKSKGHGFVQFETE 150 (629)
Q Consensus 89 ~~~~--------------~~~~s~~~~v~V~nLp~~it~~~L~~~fs~f----G~I~s~kv~~d~~g~skg~afV~f~~~ 150 (629)
..+. -..+...--|..++||.+.+..++.++|..- |..+.+-+.+..+|+..|-|||.|.++
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 5332 1222223346778999999999999999631 244455566667999999999999999
Q ss_pred HHHHHHHHHhCCCcccCceeeeecccccC--------C-----------------CCCCCCccccccccccCCCCCcCHH
Q 043470 151 ESANAAIENLNGTTVGDKRIYVGRFIKKS--------D-----------------RVLPSPAAKYTNLFMKNLDSDVTEE 205 (629)
Q Consensus 151 e~A~~Ai~~lng~~l~g~~l~v~~~~~~~--------~-----------------~~~~~~~~~~~~v~V~nLp~~~t~e 205 (629)
++|+.|+.+ +...+.-|.|.+-+++... . +..........+|.+++||++.+.|
T Consensus 217 e~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvE 295 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVE 295 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHH
Confidence 999999986 4344444444443222110 0 0001112235689999999999999
Q ss_pred HHHHHhcccCC-eeE--EEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEec
Q 043470 206 HLVEKFSKFGK-IAS--LLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265 (629)
Q Consensus 206 ~L~~~F~~~G~-v~~--~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~ 265 (629)
+|.++|..|-. |.. +++..+..|+..|-+||+|.+.++|..|....+.+...++.+.|..
T Consensus 296 dIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 296 DILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred HHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 99999998875 333 7788888999999999999999999999988877666566665543
No 73
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.43 E-value=1.2e-12 Score=140.46 Aligned_cols=81 Identities=22% Similarity=0.370 Sum_probs=74.5
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...+++|||+.|+.++++.||..+|+.||.|.+|.++. ++|||||++....+|.+|+.+|++..+.++.|+|+|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 44689999999999999999999999999999999987 4889999999999999999999999999999999999
Q ss_pred cchHHH
Q 043470 370 QRKEDR 375 (629)
Q Consensus 370 ~~k~~~ 375 (629)
..+..+
T Consensus 493 ~g~G~k 498 (894)
T KOG0132|consen 493 VGKGPK 498 (894)
T ss_pred ccCCcc
Confidence 655443
No 74
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4e-13 Score=126.18 Aligned_cols=83 Identities=30% Similarity=0.566 Sum_probs=78.5
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
+...++|-|.||++++++++|+++|..||.|.+|.|.+|+ +|.+||||||.|.+.++|.+||+.|||.-++.=.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 3356789999999999999999999999999999999996 899999999999999999999999999999999999999
Q ss_pred ccch
Q 043470 369 AQRK 372 (629)
Q Consensus 369 a~~k 372 (629)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 75
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.42 E-value=1.4e-12 Score=132.57 Aligned_cols=125 Identities=30% Similarity=0.492 Sum_probs=109.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC-
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC- 89 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~- 89 (629)
.++|||+|||.++|+++|+++|..||+|..|++.+|+.+++++|||||.|.+.++|..|++.+++..|.|++|+|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999953
Q ss_pred ---CCCC------------------cccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC
Q 043470 90 ---RDPD------------------ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE 135 (629)
Q Consensus 90 ---~~~~------------------~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~ 135 (629)
.... ........+++.+++..++...+...|..+|.+....+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 1111 112234578899999999999999999999999766665554
No 76
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.2e-13 Score=130.77 Aligned_cols=166 Identities=26% Similarity=0.423 Sum_probs=131.6
Q ss_pred ccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchH
Q 043470 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKA 270 (629)
Q Consensus 191 ~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~ 270 (629)
..+||++|+..+.+++|..+|..||.+..+.+.. ||+||.|++..+|..|+..++++.+.+..+.+.++..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 3689999999999999999999999999888864 599999999999999999999999999988888876432
Q ss_pred HHHHHHhhhhH--HHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHH
Q 043470 271 EREQILRHQFE--EKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEAS 348 (629)
Q Consensus 271 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~ 348 (629)
.....-..... -...-.......+.|.|.++..++...+|.++|+.+|.++....+ ++++||+|++.++|.
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAK 147 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhh
Confidence 11100000000 000111113345789999999999999999999999999655553 459999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEecc
Q 043470 349 KAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 349 ~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
+|+..+++..+.++.|.+...-
T Consensus 148 ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 148 RALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hcchhccchhhcCceeeecccC
Confidence 9999999999999999995443
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.2e-13 Score=127.09 Aligned_cols=146 Identities=24% Similarity=0.439 Sum_probs=125.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCCC
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD 91 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~ 91 (629)
..+|||+||+.+.+.+|.++|..||.|..|.+.. ||+||.|.+.-||..|+..||+..|.|..+.++|....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999987743 58999999999999999999999999988999888731
Q ss_pred ------CC-------cc-----cCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHH
Q 043470 92 ------PD-------AR-----KSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESA 153 (629)
Q Consensus 92 ------~~-------~~-----~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A 153 (629)
+- .+ ......+++.++...+...+|.+.|..+|.+..... ..+++||+|++.++|
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhh
Confidence 10 00 112346888999999999999999999999843322 567999999999999
Q ss_pred HHHHHHhCCCcccCceeee
Q 043470 154 NAAIENLNGTTVGDKRIYV 172 (629)
Q Consensus 154 ~~Ai~~lng~~l~g~~l~v 172 (629)
.+|++.+++..+.++.|.+
T Consensus 147 ~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hhcchhccchhhcCceeee
Confidence 9999999999999999988
No 78
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=9.7e-13 Score=127.90 Aligned_cols=75 Identities=21% Similarity=0.374 Sum_probs=69.8
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
.++|||+||++.+|+++|+++|+.||.|++|+|+.|.. ++|||||+|.++++|..|+. |||..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 46899999999999999999999999999999998853 67999999999999999995 99999999999999853
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.40 E-value=2.8e-12 Score=118.59 Aligned_cols=170 Identities=21% Similarity=0.316 Sum_probs=123.8
Q ss_pred ccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC--CCCceeEEEEEeCCHHHHHHHHHHhCCCeeC---CeEE
Q 043470 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE--NGTSRGFGFVNFDNPDDARRALEAMNGSVIG---SKVL 261 (629)
Q Consensus 187 ~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~--~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~---g~~l 261 (629)
....+++||.+||.++...+|..+|..|-.-+.+.+.... ...++-++|+.|.++.+|..|+..|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3457899999999999999999999999777666665443 3356679999999999999999999999885 4556
Q ss_pred EEecccchHHHHHH--------------------Hh-hh----------------------------------hHH----
Q 043470 262 YAARAQKKAEREQI--------------------LR-HQ----------------------------------FEE---- 282 (629)
Q Consensus 262 ~v~~a~~~~~~~~~--------------------~~-~~----------------------------------~~~---- 282 (629)
.+..+.....+... .+ .. ++.
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 66555432211000 00 00 000
Q ss_pred ---------HHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 043470 283 ---------KRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353 (629)
Q Consensus 283 ---------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~ 353 (629)
..+-.......++|||.||..++||++|+.+|+.|-.....+|.. ++| -..||++|++.+.|+.|+..
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g--~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGG--MPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCC--cceEeecHHHHHHHHHHHHH
Confidence 000000011246799999999999999999999998887777754 344 34899999999999999999
Q ss_pred hCCcee
Q 043470 354 FHGYML 359 (629)
Q Consensus 354 l~~~~~ 359 (629)
|.|..+
T Consensus 268 lqg~~~ 273 (284)
T KOG1457|consen 268 LQGNLL 273 (284)
T ss_pred hhccee
Confidence 998776
No 80
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=6.4e-13 Score=118.68 Aligned_cols=79 Identities=30% Similarity=0.513 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
-.+.||||||+.++++.||..+|..||+|.+|+|-+. .-|||||+|+++-||+.|+..|++..|+|..|+|.+|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3679999999999999999999999999999999874 56899999999999999999999999999999999998
Q ss_pred CCCC
Q 043470 90 RDPD 93 (629)
Q Consensus 90 ~~~~ 93 (629)
-.+.
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6653
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.2e-12 Score=127.16 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
..++|||+||++++||++|+++|+.||.|.+|+|++|.. +.|||||.|.+.++|+.||. ||+..|.|+.|+|.++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 368999999999999999999999999999999999864 46899999999999999995 99999999999999876
No 82
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=6e-15 Score=159.97 Aligned_cols=321 Identities=18% Similarity=0.174 Sum_probs=239.9
Q ss_pred CeEEEcCCCCCCCHHHHH-HHHhcCCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 12 ASLYVGDLHPDVTDGELF-DAFSEFKSL-ASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~-~~Fs~~G~V-~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
+.++|.|-+...+...|. .+|+.|+-+ ..++. ..++..+..||+.-.++++|..++..+.......-.+.+.-+.
T Consensus 480 ~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~---~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 480 KAREIWNFIMTYGGGSIAGKWLEAINLEREYGDG---PSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred hhhHhhhccccCCcchHHHHHHHHHhHHHHhCCc---hhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence 466788888888888888 777776522 22222 1233356689999999999999998877766555444443222
Q ss_pred CCCCc-----ccCCcccccccccchhhhhH-HHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCC
Q 043470 90 RDPDA-----RKSGVANLFVKNLIESIDNV-RLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNG 162 (629)
Q Consensus 90 ~~~~~-----~~s~~~~v~V~nLp~~it~~-~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng 162 (629)
..... +.-......+.++.+....+ .....|..+|+|..+++.... .-.+..+.++.++...++..|.. ..+
T Consensus 557 ~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~ 635 (881)
T KOG0128|consen 557 PEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAG 635 (881)
T ss_pred HHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccc
Confidence 11111 11123455667777776555 678899999999988877632 33333478899999999998887 577
Q ss_pred CcccCceeeeecccccCCCCCCCCc----cccccccccCCCCCcCHHHHHHHhcccCCeeEEEEe-eCCCCCceeEEEEE
Q 043470 163 TTVGDKRIYVGRFIKKSDRVLPSPA----AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIA-RDENGTSRGFGFVN 237 (629)
Q Consensus 163 ~~l~g~~l~v~~~~~~~~~~~~~~~----~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~-~~~~g~s~g~afV~ 237 (629)
..+.++...++....+......... ....++|++||+..+.+++|...|..+|.+..+.+. ....++.||.||+.
T Consensus 636 ~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~ 715 (881)
T KOG0128|consen 636 GALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVE 715 (881)
T ss_pred cccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeE
Confidence 7788888888776665544322222 344679999999999999999999999988776655 44577899999999
Q ss_pred eCCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcC
Q 043470 238 FDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQC 317 (629)
Q Consensus 238 F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~ 317 (629)
|...+++.+|+....+..++ + ..|+|.|.|...|+++|+.+|+.+
T Consensus 716 F~~~~~~~aaV~f~d~~~~g-K----------------------------------~~v~i~g~pf~gt~e~~k~l~~~~ 760 (881)
T KOG0128|consen 716 FLKPEHAGAAVAFRDSCFFG-K----------------------------------ISVAISGPPFQGTKEELKSLASKT 760 (881)
T ss_pred eecCCchhhhhhhhhhhhhh-h----------------------------------hhhheeCCCCCCchHHHHhhcccc
Confidence 99999999999864433332 1 159999999999999999999999
Q ss_pred CCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 318 GTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 318 G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
|++++.+++..++|+.+|-+||.|.++.+|.+++.......+..+.+.|...++
T Consensus 761 gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 761 GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999999999999999999999999999988887777666666666543
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.37 E-value=1.3e-11 Score=121.54 Aligned_cols=168 Identities=20% Similarity=0.313 Sum_probs=135.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLA--------SVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLH 79 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~--------si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~ 79 (629)
+.-+.+|||.+||.++|-+++.++|++||-|. .|++.++.. |..+|-|.+.|.-.++.+.|+..|+...|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 33456899999999999999999999999774 388999865 889999999999999999999999999999
Q ss_pred CeeeeeeccCCC------------------------------------CCcccCCcccccccccchhh-----------h
Q 043470 80 GKMLRISWSCRD------------------------------------PDARKSGVANLFVKNLIESI-----------D 112 (629)
Q Consensus 80 g~~i~I~~s~~~------------------------------------~~~~~s~~~~v~V~nLp~~i-----------t 112 (629)
|+.|+|..++-. ...+.....+|.++|+=... -
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 999999866410 01122334567777764211 1
Q ss_pred hHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccccC
Q 043470 113 NVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179 (629)
Q Consensus 113 ~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~ 179 (629)
.++|.+-.++||.|.++.|.-. ...|.+-|.|.+.++|..||+.++|..+.|+.|....+..+.
T Consensus 290 kedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 3556777899999999888743 367889999999999999999999999999999887665443
No 84
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.3e-12 Score=116.66 Aligned_cols=77 Identities=31% Similarity=0.521 Sum_probs=71.9
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
-.+.|||+||+..+++.||+.+|..||.|.+|.|..+ ..|||||+|+++.+|..|+..|+|+.|.|..|.|++..-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4689999999999999999999999999999999986 457999999999999999999999999999999999863
Q ss_pred h
Q 043470 372 K 372 (629)
Q Consensus 372 k 372 (629)
+
T Consensus 85 ~ 85 (195)
T KOG0107|consen 85 R 85 (195)
T ss_pred C
Confidence 3
No 85
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.35 E-value=1.3e-12 Score=119.38 Aligned_cols=86 Identities=24% Similarity=0.396 Sum_probs=81.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
.|++...-.+|.|-||..-++.++|+.+|++||.|-+|.|.+|..|+.+.|||||.|....||+.|++.|++..+.|+.|
T Consensus 6 ~PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 6 PPPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred CCCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 46777778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccC
Q 043470 84 RISWSC 89 (629)
Q Consensus 84 ~I~~s~ 89 (629)
+|.++.
T Consensus 86 rVq~ar 91 (256)
T KOG4207|consen 86 RVQMAR 91 (256)
T ss_pred eehhhh
Confidence 998775
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.34 E-value=4e-12 Score=129.69 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=74.2
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEEe
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSP--EEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~--~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
..+.+|||+||++.+++++|+..|+.||.|.+|.|++ .+| ||||||+|.+. +++.+|+..|||..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 3457899999999999999999999999999999994 456 99999999987 789999999999999999999999
Q ss_pred ccchHHH
Q 043470 369 AQRKEDR 375 (629)
Q Consensus 369 a~~k~~~ 375 (629)
|++.-..
T Consensus 85 AKP~YLe 91 (759)
T PLN03213 85 AKEHYLA 91 (759)
T ss_pred ccHHHHH
Confidence 9866443
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.34 E-value=1.1e-12 Score=120.02 Aligned_cols=78 Identities=24% Similarity=0.472 Sum_probs=74.7
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
.+.|.|.||.+.++.++|+.+|++||.|-+|.|..|. +++++|||||.|.+..+|+.|++.|+|.+++|+.|.|.+|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 3679999999999999999999999999999999997 78899999999999999999999999999999999999885
No 88
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.34 E-value=4.4e-12 Score=128.85 Aligned_cols=166 Identities=32% Similarity=0.474 Sum_probs=126.0
Q ss_pred cccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccc
Q 043470 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268 (629)
Q Consensus 190 ~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~ 268 (629)
..+|||+||+.++++++|.++|.+||.|..+.+..+. ++.++|||||.|.+.+++..|++.+++..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999999985 899999999999999999999999999999999999999653
Q ss_pred ----hHHHHHH--HhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCC-eeeEEEEEe
Q 043470 269 ----KAEREQI--LRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI-NKGFGFVCF 341 (629)
Q Consensus 269 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~-~kg~~fV~f 341 (629)
....... ....................+++.+++..++..++...|..+|.+....+.....+. ...+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 2111100 000000011222334567889999999999999999999999999777776654432 344445555
Q ss_pred CCHHHHHHHHHHhC
Q 043470 342 SSPEEASKAVNTFH 355 (629)
Q Consensus 342 ~~~~~A~~A~~~l~ 355 (629)
.....+........
T Consensus 275 ~~~~~~~~~~~~~~ 288 (306)
T COG0724 275 EASKDALESNSRGN 288 (306)
T ss_pred hHHHhhhhhhcccc
Confidence 55555555554433
No 89
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=2.1e-12 Score=121.10 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
-.+||||+|+++++.+.|+++|++||+|++..|+.|+.|+||+||+||.|.+.+.|+||++.-| -.|.||+..++.+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 3589999999999999999999999999999999999999999999999999999999998633 46788887776544
No 90
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=8e-12 Score=98.88 Aligned_cols=72 Identities=44% Similarity=0.722 Sum_probs=68.1
Q ss_pred eeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
+|||+|||.++++++|+++|+.||.|..+.+..+. +.++|+|||+|.+.++|.+|++.+++..++|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999887 7789999999999999999999999999999999874
No 91
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=2.6e-13 Score=121.58 Aligned_cols=79 Identities=22% Similarity=0.541 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
..++=||||+||.+.||.||.-.||+||.|++|.++||+.||+|+||||+-|.+..+...|++.||+..|.||.|||-.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999999963
No 92
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=7.9e-12 Score=101.77 Aligned_cols=81 Identities=16% Similarity=0.316 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
++.-.+-|||+|||.++|.++.+++|.+||+|..|||--.+. .+|.|||.|++..||.+|++.|++..+.++.+.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 455678999999999999999999999999999999975544 56999999999999999999999999999999998
Q ss_pred ccCC
Q 043470 87 WSCR 90 (629)
Q Consensus 87 ~s~~ 90 (629)
+-+.
T Consensus 91 yyq~ 94 (124)
T KOG0114|consen 91 YYQP 94 (124)
T ss_pred ecCH
Confidence 7653
No 93
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.31 E-value=8.1e-12 Score=119.44 Aligned_cols=76 Identities=18% Similarity=0.317 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
+.+.+|||+||++++||++|+++|+.||+|.+|+|++|.. +.|+|||.|.++++|+.|+ .||+..|.+++|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 4568999999999999999999999999999999999854 5589999999999999999 59999999999999743
No 94
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=4.9e-12 Score=107.86 Aligned_cols=83 Identities=20% Similarity=0.438 Sum_probs=78.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
.+.-|+|.+++..+||++|.+.|..||+|.+|.+-.|+.|+..+|||+|+|.+.++|..|++.+|+..|.|+.|.|-|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 043470 90 RDP 92 (629)
Q Consensus 90 ~~~ 92 (629)
...
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 543
No 95
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=1.5e-11 Score=97.21 Aligned_cols=71 Identities=45% Similarity=0.759 Sum_probs=67.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 13 sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
+|||+|||.++++++|+++|+.||+|..+++.++. +.+.|+|||+|.+.++|++|++.+++..+.|+.++|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999886 678899999999999999999999999999999876
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.1e-11 Score=118.45 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=69.9
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
.+.+|||+||++.+|+++|+++|+.||.|.+|+|++| +.++|||||+|.++++|..|+ .|+|..|.+++|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 4679999999999999999999999999999999988 567799999999999999999 69999999999988855
No 97
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=7.4e-12 Score=105.95 Aligned_cols=81 Identities=28% Similarity=0.413 Sum_probs=74.1
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC-CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~-g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
-.+++|||+||+..++||+|-++|+++|.|..|.+=.|+. -..-|||||+|.+.++|..|++-++|..++.++|.+.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3578999999999999999999999999999999877764 347799999999999999999999999999999999997
Q ss_pred cc
Q 043470 370 QR 371 (629)
Q Consensus 370 ~~ 371 (629)
--
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 53
No 98
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1e-11 Score=121.25 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=72.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCCC
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD 91 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~ 91 (629)
++|||+|||...-|.||+.+|.+||+|++|.|+.+ .+.|+||+||.|++.+||+||.++||++.|.||+|.|+.+...
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 59999999999999999999999999999999975 4569999999999999999999999999999999999866533
No 99
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.2e-11 Score=119.53 Aligned_cols=79 Identities=19% Similarity=0.434 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
-+-+||||+-|+.+++|.+|...|+.||+|..|++++|..|++|+|||||+|.+..+-..|-+..++..|.|+.|-|-+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999999998854
No 100
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.5e-11 Score=118.75 Aligned_cols=82 Identities=18% Similarity=0.459 Sum_probs=77.0
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
.+=++|||+-|+.+++|++|+..|+.||.|+.|.++.|. +|+++|||||+|+++.+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 345899999999999999999999999999999999995 9999999999999999999999999999999999999987
Q ss_pred cch
Q 043470 370 QRK 372 (629)
Q Consensus 370 ~~k 372 (629)
..+
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 543
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.26 E-value=3.8e-11 Score=127.28 Aligned_cols=165 Identities=12% Similarity=0.000 Sum_probs=122.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
.-+..+-+-+...+.++.+.|++++|-.. .|.++.+..+...+.-.|-+||.|...+++.+|+.. |......|.+.|.
T Consensus 307 vv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~ 384 (944)
T KOG4307|consen 307 VVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTG 384 (944)
T ss_pred ccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhhhhcceeec
Confidence 33455667778899999999999998655 467777777766665589999999999999999964 6666666666553
Q ss_pred ccCCC-----------------------C-----C---------cccCCcccccccccchhhhhHHHHHHHccCCCeeE-
Q 043470 87 WSCRD-----------------------P-----D---------ARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIIS- 128 (629)
Q Consensus 87 ~s~~~-----------------------~-----~---------~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s- 128 (629)
-.-.+ + . ......+.|||+.||..++++++.++|++.-.|+.
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~ 464 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF 464 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhe
Confidence 22100 0 0 11122467999999999999999999999888777
Q ss_pred eEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeee
Q 043470 129 CKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG 173 (629)
Q Consensus 129 ~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~ 173 (629)
+.+....+++.++.|||.|..++++..|...-....+..+.|.|.
T Consensus 465 I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 465 IELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred eEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 667677799999999999999888887776544444455555553
No 102
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.26 E-value=7.8e-11 Score=126.82 Aligned_cols=109 Identities=24% Similarity=0.394 Sum_probs=90.2
Q ss_pred ccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccc
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~ 268 (629)
..++|||+.|+..+++.||.++|+.||+|.++.++ .+++||||.+.+..+|.+|+.+|+...+.++.|.+.|+-.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec-----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 34789999999999999999999999999999998 4689999999999999999999999999999999999988
Q ss_pred hHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHh
Q 043470 269 KAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFS 315 (629)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~ 315 (629)
+..+. +++. +....|=|.-|||+.-.++|+.+++
T Consensus 495 ~G~ks-e~k~------------~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 495 KGPKS-EYKD------------YWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred CCcch-hhhh------------hhhcccCeeEeehHhcCHHHHHhhh
Confidence 86655 3322 2234567888898843333655553
No 103
>smart00360 RRM RNA recognition motif.
Probab=99.26 E-value=2.4e-11 Score=95.71 Aligned_cols=70 Identities=43% Similarity=0.726 Sum_probs=66.9
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 16 VGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 16 V~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
|+|||.++++++|+++|+.||.|..+.++++..+++++|||||.|.+.++|.+|++.+++..+.|+.++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999999888899999999999999999999999999999999887
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.25 E-value=2.8e-11 Score=95.31 Aligned_cols=70 Identities=46% Similarity=0.731 Sum_probs=65.8
Q ss_pred eecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 298 VKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 298 V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
|+|||+++++++|+++|+.||.|..+++..++ ++.++|+|||+|.+.++|.+|++.+++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999886 48899999999999999999999999999999999874
No 105
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=8.6e-13 Score=118.31 Aligned_cols=77 Identities=25% Similarity=0.553 Sum_probs=73.2
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
+.-|||+|||.+.||.||.-+|++||+|..|.+++|+ +|+|+||||+||++-.+-.-|+..|||..|.||.|+|.-.
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4579999999999999999999999999999999996 8999999999999999999999999999999999999754
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.25 E-value=5.3e-11 Score=94.64 Aligned_cols=74 Identities=38% Similarity=0.682 Sum_probs=70.3
Q ss_pred eeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+.++|+|||+|.+.++|..|++.+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999988778899999999999999999999999999999999874
No 107
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=6e-11 Score=96.71 Aligned_cols=83 Identities=24% Similarity=0.415 Sum_probs=74.5
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
.++-|||+|||.++|.|+.-++|.+||.|..|+|-..+. .+|.|||.|++..+|.+|++.|+|..+.++.|.|-+.+.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 346799999999999999999999999999999976543 689999999999999999999999999999999999876
Q ss_pred hHHHH
Q 043470 372 KEDRQ 376 (629)
Q Consensus 372 k~~~~ 376 (629)
.+..+
T Consensus 95 ~~~~~ 99 (124)
T KOG0114|consen 95 EDAFK 99 (124)
T ss_pred HHHHH
Confidence 55443
No 108
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.24 E-value=1.3e-11 Score=129.91 Aligned_cols=81 Identities=26% Similarity=0.515 Sum_probs=79.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCCC
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD 91 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~ 91 (629)
++|||||+|++++|++|.++|+..|+|.++++..|+.||+++||||++|.+.++|++|++.||+..+.|++++|.|...+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998866
Q ss_pred C
Q 043470 92 P 92 (629)
Q Consensus 92 ~ 92 (629)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 109
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.1e-12 Score=116.47 Aligned_cols=82 Identities=28% Similarity=0.503 Sum_probs=77.0
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..++|||++|.+++||.-|...|-.||.|.+|.+..|- +++.||||||+|.-.|+|..|+..||+.++.||.|+|.||+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 44689999999999999999999999999999999884 78899999999999999999999999999999999999997
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 654
No 110
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=7e-11 Score=93.95 Aligned_cols=74 Identities=39% Similarity=0.713 Sum_probs=69.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 13 sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
+|+|++||.++++++|.++|..+|.|..+.+.++..+ ++.|+|||.|.+.++|..|++.+++..+.|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988665 6789999999999999999999999999999998865
No 111
>PLN03213 repressor of silencing 3; Provisional
Probab=99.22 E-value=3.1e-11 Score=123.26 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHhcCCceecCeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSP--HDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~--~~A~~Al~~ln~~~i~g~~i~ 84 (629)
+.....+||||||.+++|+++|..+|+.||.|.+|.|+|+ |+ +|||||+|.+. +++.+||+.||+..++|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 3445679999999999999999999999999999999965 55 89999999987 789999999999999999999
Q ss_pred eeccC
Q 043470 85 ISWSC 89 (629)
Q Consensus 85 I~~s~ 89 (629)
|.-++
T Consensus 82 VNKAK 86 (759)
T PLN03213 82 LEKAK 86 (759)
T ss_pred Eeecc
Confidence 98775
No 112
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=99.22 E-value=8.7e-10 Score=108.34 Aligned_cols=81 Identities=17% Similarity=0.294 Sum_probs=69.5
Q ss_pred eeeeecCCCCCCHHHHHHHHhcCC--CeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQCG--TITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~~G--~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
++||+||-|++||+||.+....-| .+.+++++.++ +|+|||||+|...+..+..+.++.|..+.|+|..-.|.-.+.
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~NK 161 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYNK 161 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccch
Confidence 799999999999999999998877 67788888876 899999999999998888889999999999998776665554
Q ss_pred hHHH
Q 043470 372 KEDR 375 (629)
Q Consensus 372 k~~~ 375 (629)
....
T Consensus 162 ~~~a 165 (498)
T KOG4849|consen 162 TNQA 165 (498)
T ss_pred hhHH
Confidence 4433
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.19 E-value=4.2e-11 Score=126.22 Aligned_cols=83 Identities=31% Similarity=0.536 Sum_probs=78.2
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
+++||||+|+++++++|.++|+..|.|.+++++.|+ +|++|||||++|.+.++|.+|++.|||..++|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999996 7999999999999999999999999999999999999999755
Q ss_pred HHHH
Q 043470 373 EDRQ 376 (629)
Q Consensus 373 ~~~~ 376 (629)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5443
No 114
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.18 E-value=9.4e-11 Score=88.70 Aligned_cols=56 Identities=36% Similarity=0.653 Sum_probs=51.5
Q ss_pred HHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 310 LKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 310 l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
|+++|++||.|.++.+..+. +++|||+|.+.++|.+|++.|||..++|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998764 589999999999999999999999999999999986
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=1.3e-10 Score=92.17 Aligned_cols=61 Identities=20% Similarity=0.432 Sum_probs=54.0
Q ss_pred HHHHHHHHh----cCCCeEEEE-EeeCC-C--CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 307 DEELKAHFS----QCGTITSAK-VMRDE-K--GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 307 ~~~l~~~F~----~~G~v~~~~-v~~~~-~--g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
+++|+++|+ .||.|.++. |..++ + |.++|||||+|.+.++|.+|++.|||+.++|+.|.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999996 55543 4 8899999999999999999999999999999999863
No 116
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.1e-11 Score=111.33 Aligned_cols=84 Identities=29% Similarity=0.517 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
....|+||||+|-.++||.-|...|-.||.|..|.+..|..+.+.+|||||+|...|||..||+.||...+.||.|||.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 043470 88 SCRD 91 (629)
Q Consensus 88 s~~~ 91 (629)
+...
T Consensus 87 AkP~ 90 (298)
T KOG0111|consen 87 AKPE 90 (298)
T ss_pred cCCc
Confidence 8754
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.5e-11 Score=113.57 Aligned_cols=157 Identities=20% Similarity=0.317 Sum_probs=132.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
.+++...++|||+||-..++|+.|.|+|-+.|+|..|.|..++ .+..+ ||||+|.++-+..-|++.+|+..+.++++.
T Consensus 3 aaaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 3 AAAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred CCCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 3566778999999999999999999999999999999887664 34444 999999999999999999999999999998
Q ss_pred eeccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCc
Q 043470 85 ISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTT 164 (629)
Q Consensus 85 I~~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~ 164 (629)
|.+-+... -.-|+..++.+.++..|+..|++....+-.+.+|..+.++|+.+-...+.-.++....++.
T Consensus 81 ~~~r~G~s-----------hapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 81 RTLRCGNS-----------HAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred cccccCCC-----------cchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 86433110 0127778899999999999999999999999999999999999998888889998888877
Q ss_pred ccCceeeeec
Q 043470 165 VGDKRIYVGR 174 (629)
Q Consensus 165 l~g~~l~v~~ 174 (629)
+.-+++.++-
T Consensus 150 ~~~~~~~~gg 159 (267)
T KOG4454|consen 150 LFQKKVTIGG 159 (267)
T ss_pred cCCCCccccc
Confidence 7777666643
No 118
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=7.7e-11 Score=100.63 Aligned_cols=82 Identities=23% Similarity=0.441 Sum_probs=76.6
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
..+.-|||.++-.+.++++|.+.|..||.|+.+.+-.|+ +|..|||++|+|++.++|++|+..+||..+-|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 456789999999999999999999999999999998875 8999999999999999999999999999999999999998
Q ss_pred cch
Q 043470 370 QRK 372 (629)
Q Consensus 370 ~~k 372 (629)
--+
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 643
No 119
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.13 E-value=3.1e-11 Score=114.11 Aligned_cols=173 Identities=23% Similarity=0.359 Sum_probs=136.7
Q ss_pred ccccccccCCCCCcCHHH-H--HHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEec
Q 043470 189 KYTNLFMKNLDSDVTEEH-L--VEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~-L--~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~ 265 (629)
..-..+++++...+..+- | ...|+.|-.+....+.++..+.-++++|+.|.....-.++-..-+++.++...+....
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 334556666666655544 3 6677877777777788888889999999999988888888777777777777655554
Q ss_pred ccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCH
Q 043470 266 AQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSP 344 (629)
Q Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~ 344 (629)
.+.-.. ............||.+.|..+++|+.|-..|.+|-.....++++|. +|+++||+||.|.++
T Consensus 175 gtswed------------Psl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~p 242 (290)
T KOG0226|consen 175 GTSWED------------PSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDP 242 (290)
T ss_pred ccccCC------------cccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCH
Confidence 433211 1112234456789999999999999999999999999999999985 899999999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEeccchH
Q 043470 345 EEASKAVNTFHGYMLHRKPLYVAIAQRKE 373 (629)
Q Consensus 345 ~~A~~A~~~l~~~~~~g~~l~v~~a~~k~ 373 (629)
.++..|+.+|+|+.++.++|.+.-...++
T Consensus 243 ad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 243 ADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 99999999999999999999877665555
No 120
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.11 E-value=2.1e-10 Score=86.73 Aligned_cols=56 Identities=32% Similarity=0.621 Sum_probs=51.5
Q ss_pred HHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 28 LFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 28 L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
|+++|++||.|.+|++.++. .++|||+|.+.++|++|++.||+..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998764 479999999999999999999999999999999986
No 121
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=2.6e-10 Score=119.36 Aligned_cols=150 Identities=19% Similarity=0.233 Sum_probs=104.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
.-+.++|+|-|||.+|++++|+++|+.||+|..|+.-+ ...|..||+|-|..+|++|++.||...|.|+.+.--.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 45678999999999999999999999999999976544 3568999999999999999999999999998886221
Q ss_pred cCCCC--------------------CcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEE
Q 043470 88 SCRDP--------------------DARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQF 147 (629)
Q Consensus 88 s~~~~--------------------~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f 147 (629)
+.+.. .........+|+- |++..+.--+..+++-+|.+.. .+++.-...-|+.|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-----~~~~~~~hq~~~~~ 220 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-----RETPLLNHQRFVEF 220 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-----ccccchhhhhhhhh
Confidence 11110 0001112234433 8887777555666666666543 12333333567788
Q ss_pred cCHHHHHHHHHHhCCCcccCce
Q 043470 148 ETEESANAAIENLNGTTVGDKR 169 (629)
Q Consensus 148 ~~~e~A~~Ai~~lng~~l~g~~ 169 (629)
.+..++..+.... |+.+.++.
T Consensus 221 ~~~~s~a~~~~~~-G~~~s~~~ 241 (549)
T KOG4660|consen 221 ADNRSYAFSEPRG-GFLISNSS 241 (549)
T ss_pred ccccchhhcccCC-ceecCCCC
Confidence 8877776665533 67766665
No 122
>smart00361 RRM_1 RNA recognition motif.
Probab=99.06 E-value=6.5e-10 Score=88.21 Aligned_cols=61 Identities=23% Similarity=0.351 Sum_probs=55.9
Q ss_pred HHHHHHHHh----cCCCeeEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 25 DGELFDAFS----EFKSLASVR-VCKDSTT--GRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 25 e~~L~~~Fs----~~G~V~si~-v~rd~~t--~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
+++|+++|+ .||.|.+|. |..|..+ ++++|||||.|.+.++|.+|++.||+..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999996 7777766 889999999999999999999999999999999876
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=4.6e-11 Score=130.23 Aligned_cols=233 Identities=16% Similarity=0.148 Sum_probs=185.3
Q ss_pred CCCCeEEEcCCCCCCCHH-HHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 9 TTPASLYVGDLHPDVTDG-ELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~-~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
...+..++.++-+..... .....|..+|.|..|++........+.-++++.+....+++.|.. ..+..+.++...+-.
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCC
Confidence 344677888888877776 578999999999999987632222233388999999999999995 577778888877766
Q ss_pred cCCCCCcccCC--------cccccccccchhhhhHHHHHHHccCCCeeEeEEe-eCCCCCccceEEEEEcCHHHHHHHHH
Q 043470 88 SCRDPDARKSG--------VANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA-TSEDGKSKGHGFVQFETEESANAAIE 158 (629)
Q Consensus 88 s~~~~~~~~s~--------~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~-~d~~g~skg~afV~f~~~e~A~~Ai~ 158 (629)
+.......... ..++||+||+..+.+.+|.+.|..+|.+..+.+. ....+.-+|+||+.|...+++.+|+.
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 65443222211 3468999999999999999999999988877766 34478899999999999999999998
Q ss_pred HhCCCcccCceeeeecccccCCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEe
Q 043470 159 NLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNF 238 (629)
Q Consensus 159 ~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F 238 (629)
...++.+. ...|+|.|.|+..|+++++.+|.++|.++++.++....|+.+|.+||.|
T Consensus 728 f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y 784 (881)
T KOG0128|consen 728 FRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDY 784 (881)
T ss_pred hhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccC
Confidence 65544433 2468899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEec
Q 043470 239 DNPDDARRALEAMNGSVIGSKVLYAAR 265 (629)
Q Consensus 239 ~~~e~A~~Av~~l~g~~~~g~~l~v~~ 265 (629)
.+..++.+++.......+..+.+.+..
T Consensus 785 ~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 785 NTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred CCcchhhhhcccchhhhhhhcCccccc
Confidence 999999999877665555444444433
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.4e-10 Score=110.73 Aligned_cols=85 Identities=24% Similarity=0.361 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
..++...|||-.|.+-+|.++|.-+||.||+|.+|.|+||..|+.|+.||||+|.+.++.++|.-.|++..|..+.|.|-
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 043470 87 WSCRD 91 (629)
Q Consensus 87 ~s~~~ 91 (629)
||+..
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 98844
No 125
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.95 E-value=1.3e-09 Score=103.30 Aligned_cols=171 Identities=22% Similarity=0.381 Sum_probs=140.0
Q ss_pred ccccccccchhhhhHH-H--HHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeeccc
Q 043470 100 ANLFVKNLIESIDNVR-L--QEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFI 176 (629)
Q Consensus 100 ~~v~V~nLp~~it~~~-L--~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~ 176 (629)
...++.++-.++..+- | ...|+.+-.+...++..+..+.-.+++|+.|.....-.++-..-+++.+.-..|......
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 3445555555544433 3 677887777888888888888899999999998888777777667777776667777767
Q ss_pred ccCCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCe
Q 043470 177 KKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSV 255 (629)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~ 255 (629)
.+.+-...+......+||.+.|.-+++++-|...|.+|-......++++. +|+++||+||.|.++.++..|+.+++|+.
T Consensus 177 swedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky 256 (290)
T KOG0226|consen 177 SWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY 256 (290)
T ss_pred ccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc
Confidence 77776666777778899999999999999999999999988888888885 89999999999999999999999999999
Q ss_pred eCCeEEEEecccchH
Q 043470 256 IGSKVLYAARAQKKA 270 (629)
Q Consensus 256 ~~g~~l~v~~a~~~~ 270 (629)
++.+.|.+..+..+.
T Consensus 257 VgsrpiklRkS~wke 271 (290)
T KOG0226|consen 257 VGSRPIKLRKSEWKE 271 (290)
T ss_pred cccchhHhhhhhHHh
Confidence 999998876665554
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.89 E-value=2.4e-08 Score=106.52 Aligned_cols=248 Identities=15% Similarity=0.100 Sum_probs=162.2
Q ss_pred ccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccccCC
Q 043470 102 LFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180 (629)
Q Consensus 102 v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~ 180 (629)
+-+++...+.+..+++++|... .|-+..+..+. .+...|.++|.|....++++|+.. |.+..-++.+.+........
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcccc
Confidence 3456777778888888888753 45555565555 444478999999999999999974 55666666666644322110
Q ss_pred C-----------------------------C----CCCCccccccccccCCCCCcCHHHHHHHhcccCCeeE-EEEeeCC
Q 043470 181 R-----------------------------V----LPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIAS-LLIARDE 226 (629)
Q Consensus 181 ~-----------------------------~----~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~-~~v~~~~ 226 (629)
. . ..-......+|||..||..+++.++-++|...-.|++ |.+.+..
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P 471 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP 471 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC
Confidence 0 0 0111223468999999999999999999998877776 7777778
Q ss_pred CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHH---HHHHHhhhh---HHHHHHhhhh-c------cc
Q 043470 227 NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAE---REQILRHQF---EEKRKERILK-Y------KG 293 (629)
Q Consensus 227 ~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~---~~~~~~~~~---~~~~~~~~~~-~------~~ 293 (629)
+++.++.|||.|.+++++.+|...-+...++.+.|.|....++.. +..+...+. +.+..+...+ . ..
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m~~ek~~~~~~~lq~~~~dqre~~l~~p~~~v~~~~ 551 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAMMMEKNGEQGIKLQQSDKDQRETALDGPIPSVSMVP 551 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEeechhhHHHHHHHhHHHHHHHhhhhhHHHHHhhcCCccchhhhh
Confidence 899999999999999999998887777788889999988877654 211111111 1111111111 1 11
Q ss_pred ceeeeecCCC-CCCHHHHHHHHhcC-CCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHH
Q 043470 294 SNVYVKNIDD-DVTDEELKAHFSQC-GTITSAKVMRDEKGINKGFGFVCFSSPEEASKAV 351 (629)
Q Consensus 294 ~~l~V~nl~~-~~t~~~l~~~F~~~-G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~ 351 (629)
.+-.+.+.++ +++..+.+.+...- -.-...-+.+|..+++++-+||.|.+...+.+-.
T Consensus 552 ~~~~~~~~~~F~~~~rr~~~e~~~~~~~~n~~p~~~dN~~~~~~~~~v~~~n~p~~r~~~ 611 (944)
T KOG4307|consen 552 SKEQRSHEDDFDKKSRRSRWENTSPIRSPNRSPLRRDNRDRSRSRSPVRRRNSPRRREEH 611 (944)
T ss_pred hhhhhccCcccccchHHHHhhhcCCccCccccccccccCCcccccCccccCCCccccchh
Confidence 2233445553 44444444333221 1223345566677889999999999877776655
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.88 E-value=4.7e-09 Score=96.99 Aligned_cols=84 Identities=23% Similarity=0.346 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEF-KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~-G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
.....-+||+.+|.-+.|.+|..+|.++ |.|..+|+-|.+.||.|+|||||+|.+.+.|+-|-++||+..+.|+-+.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445589999999999999999999999 688888888999999999999999999999999999999999999988877
Q ss_pred ccCCC
Q 043470 87 WSCRD 91 (629)
Q Consensus 87 ~s~~~ 91 (629)
+-...
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 65433
No 128
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=4e-09 Score=104.31 Aligned_cols=76 Identities=26% Similarity=0.520 Sum_probs=68.9
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHH-hCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT-FHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~-l~~~~~~g~~l~v~~a 369 (629)
..-.+|||++|-+.++|.+|+++|.+||+|+++.++.. ++||||+|.+.++|+.|..+ +|...|+|++|.|.|.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 34578999999999999999999999999999999874 56999999999999999975 5667789999999999
Q ss_pred cc
Q 043470 370 QR 371 (629)
Q Consensus 370 ~~ 371 (629)
..
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 129
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.8e-08 Score=104.90 Aligned_cols=152 Identities=20% Similarity=0.314 Sum_probs=114.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCC--Ccce---EEEEEeCCHHHHHHHHHhcCC----ce-
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTG--RSTC---YGYVNFLSPHDAIRAIEVKNH----TQ- 77 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~--~s~G---~AfV~F~~~~~A~~Al~~ln~----~~- 77 (629)
++-++.|+||.||++++|+.|...|..||.+.-=.--+....+ -.+| |+|+.|+++.....-|..... ..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 4456799999999999999999999999975321111221111 1355 999999999998777655332 11
Q ss_pred ------ecCeeeeee-ccC------CCCCcccCCcccccccccchhhhhHHHHHHHc-cCCCeeEeEEeeC-CCCCccce
Q 043470 78 ------LHGKMLRIS-WSC------RDPDARKSGVANLFVKNLIESIDNVRLQEMFQ-NFGNIISCKVATS-EDGKSKGH 142 (629)
Q Consensus 78 ------i~g~~i~I~-~s~------~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs-~fG~I~s~kv~~d-~~g~skg~ 142 (629)
++.+.+.|. |-- .+.+..-....+|||++||.-++.++|..+|. -||.|+-+-|-+| +-+..+|-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 122333333 211 23445556678999999999999999999999 7999999999999 58899999
Q ss_pred EEEEEcCHHHHHHHHHH
Q 043470 143 GFVQFETEESANAAIEN 159 (629)
Q Consensus 143 afV~f~~~e~A~~Ai~~ 159 (629)
|-|.|.+..+-.+||+.
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999999999985
No 130
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=2e-09 Score=99.74 Aligned_cols=137 Identities=28% Similarity=0.425 Sum_probs=118.9
Q ss_pred cccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEeccc
Q 043470 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267 (629)
Q Consensus 188 ~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~ 267 (629)
...++|||.|+...++++-|.++|-+-|.|..+.|..+.+++.+ |+||.|++..+..-|++.+||..+.+..+.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~---- 81 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR---- 81 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc----
Confidence 45678999999999999999999999999999999999888888 9999999999999999999998887766544
Q ss_pred chHHHHHHHhhhhHHHHHHhhhhcccceeeeec----CCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCC
Q 043470 268 KKAEREQILRHQFEEKRKERILKYKGSNVYVKN----IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS 343 (629)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----l~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~ 343 (629)
+++.++ |+..++++.+.+.|+.-|.++.+++..+.+|+.+.++|+++-.
T Consensus 82 ---------------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr 134 (267)
T KOG4454|consen 82 ---------------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQR 134 (267)
T ss_pred ---------------------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhh
Confidence 466677 7888999999999999999999999999999999999998766
Q ss_pred HHHHHHHHHHhCC
Q 043470 344 PEEASKAVNTFHG 356 (629)
Q Consensus 344 ~~~A~~A~~~l~~ 356 (629)
.-..-.++....+
T Consensus 135 ~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 135 LCAVPFALDLYQG 147 (267)
T ss_pred hhcCcHHhhhhcc
Confidence 5555555554443
No 131
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=7.7e-09 Score=102.34 Aligned_cols=80 Identities=28% Similarity=0.524 Sum_probs=71.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHh-cCCceecCeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV-KNHTQLHGKML 83 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~-ln~~~i~g~~i 83 (629)
|+......+|||++|-..++|.+|+++|.+||+|.+|++.... |+|||+|.+.+.|+.|.+. +|...|+|++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 5556667899999999999999999999999999999998753 4999999999999999865 56678899999
Q ss_pred eeeccCC
Q 043470 84 RISWSCR 90 (629)
Q Consensus 84 ~I~~s~~ 90 (629)
.|.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999986
No 132
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.9e-09 Score=102.91 Aligned_cols=85 Identities=25% Similarity=0.410 Sum_probs=79.2
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
.++...|||..|..-+|++||.-+|+.||.|.+|.|++|. +|.+-.||||+|++.+++++|.=.|.+..|+.+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 4567889999999999999999999999999999999996 788999999999999999999999999999999999999
Q ss_pred ccchHH
Q 043470 369 AQRKED 374 (629)
Q Consensus 369 a~~k~~ 374 (629)
+++-..
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 976543
No 133
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.81 E-value=9e-09 Score=95.12 Aligned_cols=80 Identities=31% Similarity=0.475 Sum_probs=72.4
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcC-CCeEEEEEeeC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQC-GTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~-G~v~~~~v~~~-~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...+||+.++.-+.+.+|..+|.+| |.|+.+++-++ ++|.|||||||+|++++.|.-|.+.||++.+.++-|.|.+--
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3469999999999999999999999 67788888666 589999999999999999999999999999999999999875
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 54
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=1.7e-08 Score=105.09 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=74.2
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
...++||||.+|...+-..||+.+|++||.|..++|+.+. .--.++|+||++.+.++|++||..||...++|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 4568899999999999999999999999999999999985 333689999999999999999999999999999999998
Q ss_pred cc
Q 043470 369 AQ 370 (629)
Q Consensus 369 a~ 370 (629)
++
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 74
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.65 E-value=6.5e-08 Score=94.15 Aligned_cols=80 Identities=28% Similarity=0.468 Sum_probs=75.8
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
.+.|+|.||+..++++||+++|..||.++.+-|..++.|.+.|.|-|.|...++|.+|++.+||..++|++|.+.+....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999998887544
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=2.2e-08 Score=110.15 Aligned_cols=159 Identities=23% Similarity=0.314 Sum_probs=134.4
Q ss_pred ccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccc
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~ 268 (629)
..++||++||+..+++.+|+..|..+|.|..+.+.+-.-+...-|+|+.|.+.+.+.+|...+.+..|....+.....+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 45789999999999999999999999999999987765555566999999999999999999888887765555544432
Q ss_pred hHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHH
Q 043470 269 KAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEAS 348 (629)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~ 348 (629)
+ ....+.+++++|..|+....|...|..||.|..|.+-. |++ |++|.|.+...|+
T Consensus 451 k--------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---gq~--yayi~yes~~~aq 505 (975)
T KOG0112|consen 451 K--------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---GQP--YAYIQYESPPAAQ 505 (975)
T ss_pred c--------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc---CCc--ceeeecccCccch
Confidence 2 23456899999999999999999999999999877754 333 9999999999999
Q ss_pred HHHHHhCCceeCC--eEEEEEeccch
Q 043470 349 KAVNTFHGYMLHR--KPLYVAIAQRK 372 (629)
Q Consensus 349 ~A~~~l~~~~~~g--~~l~v~~a~~k 372 (629)
.|++.|.|..|+| +.+.|.|+...
T Consensus 506 ~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred hhHHHHhcCcCCCCCcccccccccCC
Confidence 9999999999985 78999998754
No 137
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.56 E-value=1.4e-07 Score=98.50 Aligned_cols=83 Identities=24% Similarity=0.528 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCC
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR 90 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~ 90 (629)
+|.|||.+|...+--.+|..+|++||+|+..+|+.+..+-.-.||+||.+.+.++|.+||+.|+.+.++|+.|.|...+.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 46899999999888899999999999999999999888877899999999999999999999999999999999998876
Q ss_pred CCC
Q 043470 91 DPD 93 (629)
Q Consensus 91 ~~~ 93 (629)
.+.
T Consensus 485 Ep~ 487 (940)
T KOG4661|consen 485 EPG 487 (940)
T ss_pred Ccc
Confidence 553
No 138
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.55 E-value=3.5e-08 Score=99.76 Aligned_cols=176 Identities=22% Similarity=0.307 Sum_probs=134.6
Q ss_pred ccccccccCCCCCcCHHHHHHHhcccCCeeEEEEee-CCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEeccc
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIAR-DENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~-~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~ 267 (629)
..+..|++++...+.+.+...++..+|....+.+.. .....+++++++.|...+.+..++.........+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 467899999999999988889999999766655544 4578899999999999999999998655445544443332222
Q ss_pred chHHHHHHHhhhhHHHHHHhhhhcccceee-eecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHH
Q 043470 268 KKAEREQILRHQFEEKRKERILKYKGSNVY-VKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPE 345 (629)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~ 345 (629)
....+ ......+.......++| |++|+..+++++|+.+|..+|.|..+++..++ .|.++||++|+|.+..
T Consensus 167 ~~~~~--------~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 167 RRGLR--------PKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred ccccc--------ccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 21100 00011112223334555 99999999999999999999999999999886 7889999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEeccchH
Q 043470 346 EASKAVNTFHGYMLHRKPLYVAIAQRKE 373 (629)
Q Consensus 346 ~A~~A~~~l~~~~~~g~~l~v~~a~~k~ 373 (629)
.+..++.. ....++++++.+.......
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 239 SKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hHHHHhhc-ccCcccCcccccccCCCCc
Confidence 99999987 8889999999999886553
No 139
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=6.6e-07 Score=93.50 Aligned_cols=152 Identities=22% Similarity=0.328 Sum_probs=110.0
Q ss_pred cccccccccchhhhhHHHHHHHccCCCeeE-eE--EeeCCCCCccc---eEEEEEcCHHHHHHHHHHhCCC---------
Q 043470 99 VANLFVKNLIESIDNVRLQEMFQNFGNIIS-CK--VATSEDGKSKG---HGFVQFETEESANAAIENLNGT--------- 163 (629)
Q Consensus 99 ~~~v~V~nLp~~it~~~L~~~fs~fG~I~s-~k--v~~d~~g~skg---~afV~f~~~e~A~~Ai~~lng~--------- 163 (629)
.+.|||++||.+++++.|...|..||.+.- .- ......-..+| |.|+-|+++.+...-+..+.-.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vs 338 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVS 338 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEe
Confidence 568999999999999999999999997642 11 11111223456 9999999999998888765420
Q ss_pred --cccCceeeeecccccCC---CCCCCCccccccccccCCCCCcCHHHHHHHhc-ccCCeeEEEEeeC-CCCCceeEEEE
Q 043470 164 --TVGDKRIYVGRFIKKSD---RVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFS-KFGKIASLLIARD-ENGTSRGFGFV 236 (629)
Q Consensus 164 --~l~g~~l~v~~~~~~~~---~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~-~~G~v~~~~v~~~-~~g~s~g~afV 236 (629)
.+..+.|.|..+.-... ......-...++|||++||.-++-++|..+|+ -||.|..+.|-.| +-+=.+|-|-|
T Consensus 339 s~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRV 418 (520)
T KOG0129|consen 339 SPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRV 418 (520)
T ss_pred cCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCccee
Confidence 01112222222211111 01123334568999999999999999999998 8999999999888 45678899999
Q ss_pred EeCCHHHHHHHHHH
Q 043470 237 NFDNPDDARRALEA 250 (629)
Q Consensus 237 ~F~~~e~A~~Av~~ 250 (629)
+|.+..+-.+|+++
T Consensus 419 tFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 419 TFSNQQAYIKAISA 432 (520)
T ss_pred eecccHHHHHHHhh
Confidence 99999999999975
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.53 E-value=4.8e-07 Score=75.46 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceec----Ceeeee
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEF--KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLH----GKMLRI 85 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~--G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~----g~~i~I 85 (629)
+||.|+|||...|.++|.+++... |...-+-+.-|-.++.++|||||+|.+.++|.+..+.+++..+. .+.|.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988765 56677788889899999999999999999999999999998765 577788
Q ss_pred eccC
Q 043470 86 SWSC 89 (629)
Q Consensus 86 ~~s~ 89 (629)
.|+.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8775
No 141
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.43 E-value=1.9e-07 Score=94.38 Aligned_cols=170 Identities=21% Similarity=0.268 Sum_probs=135.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
+..+++|++++-..+.+.++-.++..+|.+...++........++|++++.|...+.+..|+.......+.++.+..-..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45789999999999999999999999998888888776677789999999999999999999764444444444433322
Q ss_pred CCCC--------CcccCCccccc-ccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHH
Q 043470 89 CRDP--------DARKSGVANLF-VKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158 (629)
Q Consensus 89 ~~~~--------~~~~s~~~~v~-V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~ 158 (629)
.... ........+++ +.+++.+++.++|+..|..+|.|..+++..++ ++..+|++||.|.....+..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 2211 12223344566 99999999999999999999999999999888 89999999999999999999998
Q ss_pred HhCCCcccCceeeeecccccC
Q 043470 159 NLNGTTVGDKRIYVGRFIKKS 179 (629)
Q Consensus 159 ~lng~~l~g~~l~v~~~~~~~ 179 (629)
. ....+.++.+.+.....+.
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred c-ccCcccCcccccccCCCCc
Confidence 7 7777788877776554443
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.41 E-value=8e-07 Score=86.62 Aligned_cols=82 Identities=32% Similarity=0.395 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
...+..|+|.|||+.|+++||.|+|..||.+..+-|-.| .+++|+|.|-|.|...+||++|++.+|+..+.|+++.|..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 334468999999999999999999999998888877666 5788999999999999999999999999999999998875
Q ss_pred cCC
Q 043470 88 SCR 90 (629)
Q Consensus 88 s~~ 90 (629)
...
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 543
No 143
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=1.7e-07 Score=103.31 Aligned_cols=158 Identities=20% Similarity=0.304 Sum_probs=132.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
+...+++|++|||+..+++.+|+..|..+|.|.+|.|-+-. -++-.-||||.|.+...+-+|+-.+.+..|....+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 56778999999999999999999999999999999887643 23456799999999999999999988888877788887
Q ss_pred ccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCccc
Q 043470 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG 166 (629)
Q Consensus 87 ~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~ 166 (629)
+.+. .......+++++|.+-.....|...|..||.|..+.+-. ...|+||.|++...++.|...+-|..+.
T Consensus 447 lG~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G 517 (975)
T KOG0112|consen 447 LGQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLG 517 (975)
T ss_pred cccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCC
Confidence 6653 334467899999999999999999999999998765543 3469999999999999999999999886
Q ss_pred C--ceeeeec
Q 043470 167 D--KRIYVGR 174 (629)
Q Consensus 167 g--~~l~v~~ 174 (629)
+ +.+.|..
T Consensus 518 ~P~~r~rvdl 527 (975)
T KOG0112|consen 518 GPPRRLRVDL 527 (975)
T ss_pred CCCccccccc
Confidence 6 4455533
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.38 E-value=7.1e-07 Score=93.94 Aligned_cols=80 Identities=28% Similarity=0.424 Sum_probs=68.8
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
....|||+|||.+++.++|+++|..||.|+...|.... .++..+||||+|.+.+++..|+.+ +-..+++++|.|+-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34559999999999999999999999999999887754 455559999999999999999974 4788999999999765
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
..
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 43
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.34 E-value=5.7e-07 Score=87.94 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
...+++||+|+...+|-+++..+|+.||.|..|.|..|+.++.++|||||+|.+.+.++.|+. ||+..|.|+.+.+.|-
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 345799999999999999999999999999999999999999999999999999999999998 9999999999998866
Q ss_pred CC
Q 043470 89 CR 90 (629)
Q Consensus 89 ~~ 90 (629)
..
T Consensus 178 r~ 179 (231)
T KOG4209|consen 178 RT 179 (231)
T ss_pred ee
Confidence 53
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.34 E-value=6.9e-07 Score=95.98 Aligned_cols=82 Identities=28% Similarity=0.491 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDS---TTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~---~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...-|||+||++.++|..|...|..||+|.+|+|..-+ -.++..-|+||.|.+..||++|++.|++..+.+..+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 34589999999999999999999999999999998543 234456689999999999999999999999999999999
Q ss_pred ccCCC
Q 043470 87 WSCRD 91 (629)
Q Consensus 87 ~s~~~ 91 (629)
|++..
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 99643
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.31 E-value=2.6e-06 Score=67.47 Aligned_cols=70 Identities=21% Similarity=0.241 Sum_probs=49.4
Q ss_pred CeEEEcCCCCCCCHHH----HHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 12 ASLYVGDLHPDVTDGE----LFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~----L~~~Fs~~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
..|||.|||.+.+-.. |..++.-|| .|.+| +.|.|+|.|.+.+.|++|.+.|++..+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999999866 467777886 88876 23579999999999999999999999999999999
Q ss_pred ccCCC
Q 043470 87 WSCRD 91 (629)
Q Consensus 87 ~s~~~ 91 (629)
|+...
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 88543
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.26 E-value=1.6e-06 Score=91.42 Aligned_cols=78 Identities=26% Similarity=0.488 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
..+|||+|||.++++++|+++|..||+|+..+|......+++.+||||.|.+.++++.||+. +-..|.++.+.|.--.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34699999999999999999999999999888876544445559999999999999999986 6788889999997433
No 149
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.23 E-value=8.1e-06 Score=68.17 Aligned_cols=80 Identities=25% Similarity=0.340 Sum_probs=69.1
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcC--CCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQC--GTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLH----RKPLYV 366 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~----g~~l~v 366 (629)
++|-|+|||...|.++|.+++... |....+-+..|- ++-..|||||.|.+++.|.+-.+.++|+.+. .|.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998663 777888887774 5668999999999999999999999998874 688899
Q ss_pred EeccchH
Q 043470 367 AIAQRKE 373 (629)
Q Consensus 367 ~~a~~k~ 373 (629)
.+|+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9997543
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.21 E-value=1.9e-06 Score=84.29 Aligned_cols=82 Identities=30% Similarity=0.458 Sum_probs=74.9
Q ss_pred hhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC-CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 289 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~-g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
.......+||+|++..+|.+++..+|+.||.|..+.+..|.+ |++|||+||+|.+.+.+..|+. |++..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 344567899999999999999999999999999999999974 5799999999999999999998 99999999999999
Q ss_pred eccc
Q 043470 368 IAQR 371 (629)
Q Consensus 368 ~a~~ 371 (629)
+.+.
T Consensus 176 ~~r~ 179 (231)
T KOG4209|consen 176 LKRT 179 (231)
T ss_pred eeee
Confidence 8753
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.21 E-value=1.9e-06 Score=92.74 Aligned_cols=81 Identities=23% Similarity=0.450 Sum_probs=73.8
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC----CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE----KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~----~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 365 (629)
....+||||+||+..++++.|...|..||.|-+++||-.+ .-..+.||||.|-+..+|.+|++.|+|.++.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3467899999999999999999999999999999998764 234667999999999999999999999999999999
Q ss_pred EEecc
Q 043470 366 VAIAQ 370 (629)
Q Consensus 366 v~~a~ 370 (629)
+.|++
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99985
No 152
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=9.5e-07 Score=93.15 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=63.9
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 365 (629)
...+|+|-|||..|++++|+++|+.||+|+.|+.-.. .+|.+||+|.|..+|.+|+++||+..+.|+.|.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4568999999999999999999999999999776554 567899999999999999999999999999987
No 153
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.08 E-value=1.2e-05 Score=87.40 Aligned_cols=10 Identities=0% Similarity=-0.027 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 043470 150 EESANAAIEN 159 (629)
Q Consensus 150 ~e~A~~Ai~~ 159 (629)
...+.+|++.
T Consensus 209 ~~eiIrClka 218 (1102)
T KOG1924|consen 209 LQEIIRCLKA 218 (1102)
T ss_pred HHHHHHHHHH
Confidence 4445555554
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.07 E-value=1.5e-06 Score=88.15 Aligned_cols=151 Identities=23% Similarity=0.404 Sum_probs=118.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc-eecCeeeeeeccC
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT-QLHGKMLRISWSC 89 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~-~i~g~~i~I~~s~ 89 (629)
..||++||.+.++.++|..+|.... +...-.+++ .|||||++.+..-|.+|++++++. .+.|+++.+..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 3689999999999999999997763 112212222 379999999999999999999985 7889999987665
Q ss_pred CCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCce
Q 043470 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKR 169 (629)
Q Consensus 90 ~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~ 169 (629)
.. +-..+.+-|.|+++..-.+.|..+...||++.+|....-. ...-.--|+|.+.+.++.||.+++|..+.+..
T Consensus 75 ~k----kqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~--~etavvnvty~~~~~~~~ai~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 75 PK----KQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD--SETAVVNVTYSAQQQHRQAIHKLNGPQLENQH 148 (584)
T ss_pred hH----HHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc--hHHHHHHHHHHHHHHHHHHHHhhcchHhhhhh
Confidence 32 1223558999999999999999999999999999875432 11222346788899999999999999999888
Q ss_pred eeeecc
Q 043470 170 IYVGRF 175 (629)
Q Consensus 170 l~v~~~ 175 (629)
+.+++.
T Consensus 149 ~k~~Yi 154 (584)
T KOG2193|consen 149 LKVGYI 154 (584)
T ss_pred hhcccC
Confidence 887654
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.03 E-value=2.2e-06 Score=86.16 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=118.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEee---cCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee-ee
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCK---DSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML-RI 85 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~r---d~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i-~I 85 (629)
....|.|.||.+.+|.++++.+|...|.|..++++. |....-..-.|||.|.+...+..|-.. .++.|-++.+ .+
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEE
Confidence 344899999999999999999999999999999985 222223467899999999999999864 4554444444 44
Q ss_pred eccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcc
Q 043470 86 SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV 165 (629)
Q Consensus 86 ~~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l 165 (629)
.+.... +.... +|..+++-. +...++. .+|.++
T Consensus 85 p~~~~~-------------------~p~r~---af~~l~~~n------------------------avprll~-pdg~Lp 117 (479)
T KOG4676|consen 85 PYGDEV-------------------IPDRF---AFVELADQN------------------------AVPRLLP-PDGVLP 117 (479)
T ss_pred ecCCCC-------------------CccHH---HHHhcCccc------------------------ccccccC-CCCccC
Confidence 332211 11111 333332211 1111111 133222
Q ss_pred cCceeeeecccccCCCCCC---------CCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEE
Q 043470 166 GDKRIYVGRFIKKSDRVLP---------SPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFV 236 (629)
Q Consensus 166 ~g~~l~v~~~~~~~~~~~~---------~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV 236 (629)
....+...-.....-...+ ....-.++++|.+|...|...++-+.|..+|+|....+... ....+|-+
T Consensus 118 ~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask---~~s~~c~~ 194 (479)
T KOG4676|consen 118 GDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASK---SRSSSCSH 194 (479)
T ss_pred CCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc---CCCcchhh
Confidence 2222211111100000000 01112267999999999999999999999999976655432 33346668
Q ss_pred EeCCHHHHHHHHHHhCCCeeC
Q 043470 237 NFDNPDDARRALEAMNGSVIG 257 (629)
Q Consensus 237 ~F~~~e~A~~Av~~l~g~~~~ 257 (629)
.|....+...|+.. +|..+.
T Consensus 195 sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 195 SFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hHhhhhhHHHHHHh-cchhhh
Confidence 99888888888864 455443
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.92 E-value=3.9e-05 Score=60.97 Aligned_cols=70 Identities=21% Similarity=0.371 Sum_probs=48.3
Q ss_pred ceeeeecCCCCCCHH----HHHHHHhcCC-CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 294 SNVYVKNIDDDVTDE----ELKAHFSQCG-TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~----~l~~~F~~~G-~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
+-|||.|||.+.+-. .|+.++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|..|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 469999999988864 4666777886 666553 35899999999999999999999999999999999
Q ss_pred ccch
Q 043470 369 AQRK 372 (629)
Q Consensus 369 a~~k 372 (629)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8543
No 157
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.83 E-value=6.7e-05 Score=81.90 Aligned_cols=6 Identities=33% Similarity=0.877 Sum_probs=2.3
Q ss_pred hhccCC
Q 043470 574 MLLEMD 579 (629)
Q Consensus 574 m~l~~~ 579 (629)
|+||.|
T Consensus 721 ~ILevn 726 (1102)
T KOG1924|consen 721 VILEVN 726 (1102)
T ss_pred HHhhcc
Confidence 334433
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.76 E-value=5.6e-05 Score=64.70 Aligned_cols=78 Identities=23% Similarity=0.451 Sum_probs=48.6
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC-----CceeCCeEEEEE
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH-----GYMLHRKPLYVA 367 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~-----~~~~~g~~l~v~ 367 (629)
|+.|+|.+++..++.++|++.|+.||.|..|.+....+ .|+|.|.+.++|.+|+..+. +..+.+..+.+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT-----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46799999999999999999999999999988876433 79999999999999998664 346778888888
Q ss_pred eccchHHH
Q 043470 368 IAQRKEDR 375 (629)
Q Consensus 368 ~a~~k~~~ 375 (629)
+-.-.++.
T Consensus 76 vLeGeeE~ 83 (105)
T PF08777_consen 76 VLEGEEEE 83 (105)
T ss_dssp ---HHHHH
T ss_pred ECCCHHHH
Confidence 76654443
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.74 E-value=3.5e-05 Score=77.63 Aligned_cols=87 Identities=18% Similarity=0.275 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCce
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLA--------SVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~--------si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~ 77 (629)
+..+...+|||-.||..+++.+|+++|.+||.|. .|.|.+|+.|.+++|-|.|.|.+...|+.|++.++...
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 3445567999999999999999999999999873 48899999999999999999999999999999999999
Q ss_pred ecCeeeeeeccCCCC
Q 043470 78 LHGKMLRISWSCRDP 92 (629)
Q Consensus 78 i~g~~i~I~~s~~~~ 92 (629)
+.|..|.|.++.+.+
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999997776553
No 160
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.67 E-value=4.7e-06 Score=83.90 Aligned_cols=211 Identities=18% Similarity=0.196 Sum_probs=124.6
Q ss_pred CcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC----CCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeee
Q 043470 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE----DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVG 173 (629)
Q Consensus 98 ~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~----~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~ 173 (629)
..+-|-|.||+++++.+.++.+|.-.|.|..+.+.... .......|||.|.+...+..|-. |.+..+-++.+.|.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 34578899999999999999999999999998888643 33456789999999999888876 55566666666553
Q ss_pred cccccCCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 043470 174 RFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNG 253 (629)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g 253 (629)
.... .+.++.. .|..++.-+.+--.... +|
T Consensus 85 p~~~-----------------------~~~p~r~--af~~l~~~navprll~p-------------------------dg 114 (479)
T KOG4676|consen 85 PYGD-----------------------EVIPDRF--AFVELADQNAVPRLLPP-------------------------DG 114 (479)
T ss_pred ecCC-----------------------CCCccHH--HHHhcCcccccccccCC-------------------------CC
Confidence 3211 1111111 33333332222111111 11
Q ss_pred CeeCCeEEEEecccchH-HHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCC
Q 043470 254 SVIGSKVLYAARAQKKA-EREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI 332 (629)
Q Consensus 254 ~~~~g~~l~v~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~ 332 (629)
..+....|......+.. .....|...++..+-+.. ..+++|.+|...+...++.+.|..+|+|....+... .
T Consensus 115 ~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleei----rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask---~ 187 (479)
T KOG4676|consen 115 VLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEI----RRTREVQSLISAAILPESGESFERKGEVSYAHTASK---S 187 (479)
T ss_pred ccCCCCccccccCCccceecCCCCChHhhhhhhHHH----Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc---C
Confidence 11111111000000000 000111122222222221 157999999999999999999999999987776543 2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 333 NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 333 ~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
..-+|-|.|........|+. ++|..+.-....++
T Consensus 188 ~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~a 221 (479)
T KOG4676|consen 188 RSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRA 221 (479)
T ss_pred CCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhh
Confidence 33467789988777778875 66766653333333
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.57 E-value=7.2e-05 Score=74.30 Aligned_cols=73 Identities=23% Similarity=0.385 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 13 SLYVGDLHPDVTDGELFDAFSEFK--SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 13 sLyV~nLp~~~te~~L~~~Fs~~G--~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
.+|||||-+.+|++||.+.+...| .+.+++++.++..+.|+|||+|...+.+..++-|+.|-...|+|+.-.|
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 799999999999999999998888 7889999999999999999999999999999999999999999976555
No 162
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.55 E-value=0.00013 Score=62.47 Aligned_cols=60 Identities=28% Similarity=0.427 Sum_probs=40.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT 76 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~ 76 (629)
++.|.|.+++.+++.++|.+.|+.||.|..|.+.+... .|||.|.+.++|++|++.+...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 35789999999999999999999999999999887644 6999999999999999876654
No 163
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.51 E-value=1.5e-05 Score=80.94 Aligned_cols=155 Identities=20% Similarity=0.300 Sum_probs=122.1
Q ss_pred ccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCc-ccCceeeeeccccc
Q 043470 100 ANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTT-VGDKRIYVGRFIKK 178 (629)
Q Consensus 100 ~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~-l~g~~l~v~~~~~~ 178 (629)
..++++||.+..+..+|..+|...---.+-.++. ..||+||.+.+...|.+|++.++|+. +.|+++.+.....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 3589999999999999999998653222222222 35899999999999999999999854 68888888777666
Q ss_pred CCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 043470 179 SDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGS 258 (629)
Q Consensus 179 ~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g 258 (629)
..+ .+.+-|.|++....++-|..+...||.+.+|......+. .-..-|+|...+.+..|+..+++..+..
T Consensus 77 kqr--------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl~g~Q~en 146 (584)
T KOG2193|consen 77 KQR--------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKLNGPQLEN 146 (584)
T ss_pred HHH--------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhhcchHhhh
Confidence 544 356899999999999999999999999998876443221 1123467888899999999999999988
Q ss_pred eEEEEecccch
Q 043470 259 KVLYAARAQKK 269 (629)
Q Consensus 259 ~~l~v~~a~~~ 269 (629)
..+.+.+....
T Consensus 147 ~~~k~~YiPde 157 (584)
T KOG2193|consen 147 QHLKVGYIPDE 157 (584)
T ss_pred hhhhcccCchh
Confidence 88888776554
No 164
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=5.3e-05 Score=85.41 Aligned_cols=64 Identities=27% Similarity=0.402 Sum_probs=59.9
Q ss_pred HHHHHHHhhhhhhhhhcCCCCccchhhhhccCChHHHHHhcCChHHHHHHHHHHH--HHHHHHHhc
Q 043470 547 QQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAV--QVLKLSEAK 610 (629)
Q Consensus 547 ~q~~~~ge~l~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~--~~~~~~~~~ 610 (629)
-.+|.|||+||+.++.+.|.+|.||||||||.....+|.+|..++.|+..|++|+ +++..|-.+
T Consensus 2606 Ae~Q~la~l~wgqhe~~l~a~~s~~sGfL~dek~~g~llgi~ce~p~eafVdaa~ndd~i~~H~qe 2671 (3015)
T KOG0943|consen 2606 AERQALAELLWGQHEAMLPAFASKISGFLLDEKPAGLLLGIACEDPLEAFVDAAMNDDLIIAHGQE 2671 (3015)
T ss_pred hhhccchhhcchhhhhHHHHHHHhhhhhhhccchHHHHHHHhhcCcHHHHHHHhcchHHHHHHHHH
Confidence 3588999999999999999999999999999999999999999999999999999 888888643
No 165
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.42 E-value=0.00011 Score=74.12 Aligned_cols=82 Identities=28% Similarity=0.490 Sum_probs=71.7
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEE--------EEEeeC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITS--------AKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------~~v~~~-~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~ 362 (629)
...+|||-++++.+++.+|.++|.++|.|.. |.|.+| +++.+||-|.|.|.+...|+.|+..++++.|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4468999999999999999999999998853 334444 3788999999999999999999999999999999
Q ss_pred EEEEEeccchH
Q 043470 363 PLYVAIAQRKE 373 (629)
Q Consensus 363 ~l~v~~a~~k~ 373 (629)
.|+|.+|..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999987654
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.35 E-value=0.00038 Score=66.99 Aligned_cols=89 Identities=24% Similarity=0.297 Sum_probs=80.3
Q ss_pred HHHHHHHHhCCCeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEE
Q 043470 243 DARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITS 322 (629)
Q Consensus 243 ~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~ 322 (629)
-|..|..+|.+....++.|.|.++..+ .|||.||...+.-|.|.+.|+.||.|++
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a-------------------------~l~V~nl~~~~sndll~~~f~~fg~~e~ 60 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA-------------------------ELYVVNLMQGASNDLLEQAFRRFGPIER 60 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc-------------------------eEEEEecchhhhhHHHHHhhhhcCccch
Confidence 456777788999999999999988652 5999999999999999999999999999
Q ss_pred EEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 043470 323 AKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG 356 (629)
Q Consensus 323 ~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~ 356 (629)
..+..|..++..+-++|.|...-.|.+|+...+.
T Consensus 61 av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 61 AVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred heeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 9999999999999999999999999999986643
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00083 Score=71.18 Aligned_cols=78 Identities=29% Similarity=0.357 Sum_probs=64.8
Q ss_pred ccceeeeecCCCCCC------HHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC-CeEE
Q 043470 292 KGSNVYVKNIDDDVT------DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH-RKPL 364 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t------~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l 364 (629)
-.++|+|.|+|---. ..-|.++|+++|.|....+..++.|.++||.|++|.+..+|..|++.+||+.++ .+..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 346789999885322 244677899999999999999998899999999999999999999999999987 4566
Q ss_pred EEEec
Q 043470 365 YVAIA 369 (629)
Q Consensus 365 ~v~~a 369 (629)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 66654
No 168
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.14 E-value=0.00088 Score=66.53 Aligned_cols=80 Identities=26% Similarity=0.387 Sum_probs=64.3
Q ss_pred ceeeeecCCCCCCHHH----H--HHHHhcCCCeEEEEEeeCC--CCCeee-E-EEEEeCCHHHHHHHHHHhCCceeCCeE
Q 043470 294 SNVYVKNIDDDVTDEE----L--KAHFSQCGTITSAKVMRDE--KGINKG-F-GFVCFSSPEEASKAVNTFHGYMLHRKP 363 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~----l--~~~F~~~G~v~~~~v~~~~--~g~~kg-~-~fV~f~~~~~A~~A~~~l~~~~~~g~~ 363 (629)
.-+||-+|+..+-+|+ | .++|.+||.|..|.|-+.. .+...+ + .+|+|.+.|+|.+||.+.+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 3479999999887776 2 5789999999999886653 111122 2 399999999999999999999999999
Q ss_pred EEEEeccchH
Q 043470 364 LYVAIAQRKE 373 (629)
Q Consensus 364 l~v~~a~~k~ 373 (629)
|+.+|...|-
T Consensus 195 lkatYGTTKY 204 (480)
T COG5175 195 LKATYGTTKY 204 (480)
T ss_pred EeeecCchHH
Confidence 9999986653
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.11 E-value=0.00082 Score=64.72 Aligned_cols=88 Identities=26% Similarity=0.381 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCceecCeeeeeeccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEE
Q 043470 65 DAIRAIEVKNHTQLHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGF 144 (629)
Q Consensus 65 ~A~~Al~~ln~~~i~g~~i~I~~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~af 144 (629)
-|+.|-..|++...+|+.++|.|... ..|+|.||..-++++.+..-|+.||+|....+..|..++..+-++
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~ 76 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGI 76 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccch
Confidence 46666777789999999999998763 468999999999999999999999999999999999999999999
Q ss_pred EEEcCHHHHHHHHHHhC
Q 043470 145 VQFETEESANAAIENLN 161 (629)
Q Consensus 145 V~f~~~e~A~~Ai~~ln 161 (629)
|.|...-.|..|+..++
T Consensus 77 v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 77 VEFAKKPNARKAARRCR 93 (275)
T ss_pred hhhhcchhHHHHHHHhc
Confidence 99999999999998764
No 170
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.07 E-value=0.0012 Score=48.80 Aligned_cols=52 Identities=23% Similarity=0.505 Sum_probs=41.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAI 70 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al 70 (629)
+.|-|.+.+++..+ +++.+|+.+|+|+.+.+-... -+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 56788888877664 455689999999998886322 27999999999999996
No 171
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.05 E-value=0.0013 Score=48.64 Aligned_cols=52 Identities=25% Similarity=0.419 Sum_probs=41.7
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHH
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAV 351 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~ 351 (629)
+.|-|.+.+.+.. +++..+|..||+|..+.+... +-+.+|+|.++.+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 4677888886655 446669999999999988732 348999999999999985
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.00 E-value=0.00029 Score=67.94 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=56.1
Q ss_pred HHHHHHHh-cCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 308 EELKAHFS-QCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 308 ~~l~~~F~-~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
|||...|+ +||+|+.++|-.+-.-.-+|-++|.|..+++|.+|++.||+.+++|++|...+..--
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 55666666 899999998887765567889999999999999999999999999999999987533
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.99 E-value=0.00068 Score=69.65 Aligned_cols=67 Identities=22% Similarity=0.302 Sum_probs=56.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec---C--CCCCc--------ceEEEEEeCCHHHHHHHHHhcCCc
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKD---S--TTGRS--------TCYGYVNFLSPHDAIRAIEVKNHT 76 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd---~--~t~~s--------~G~AfV~F~~~~~A~~Al~~ln~~ 76 (629)
++++|.+-|||.|-.-+.|.++|+.+|.|.+||||+. . ..+.+ +-+|+|+|...+.|.+|.+.||..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999999999999999999999999976 1 11211 457999999999999999987653
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.92 E-value=0.00043 Score=71.09 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=61.9
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeC---C---CCC--------eeeEEEEEeCCHHHHHHHHHHhCC
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD---E---KGI--------NKGFGFVCFSSPEEASKAVNTFHG 356 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~---~---~g~--------~kg~~fV~f~~~~~A~~A~~~l~~ 356 (629)
.++++|.+.|||.+-..+.|.++|+.+|.|.+|+|... + .|. .+-||||+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46789999999999999999999999999999999876 2 121 256899999999999999998765
Q ss_pred ceeCCeEEEEEe
Q 043470 357 YMLHRKPLYVAI 368 (629)
Q Consensus 357 ~~~~g~~l~v~~ 368 (629)
....-.-|+|.+
T Consensus 309 e~~wr~glkvkL 320 (484)
T KOG1855|consen 309 EQNWRMGLKVKL 320 (484)
T ss_pred hhhhhhcchhhh
Confidence 443333444443
No 175
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.81 E-value=0.0025 Score=63.37 Aligned_cols=77 Identities=23% Similarity=0.471 Sum_probs=61.7
Q ss_pred eEEEcCCCCCCCHHHH------HHHHhcCCCeeEEEEeecCCCCCc-ceEE--EEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 13 SLYVGDLHPDVTDGEL------FDAFSEFKSLASVRVCKDSTTGRS-TCYG--YVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 13 sLyV~nLp~~~te~~L------~~~Fs~~G~V~si~v~rd~~t~~s-~G~A--fV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
-+||-+|++.+..+++ .++|.+||.|..|-|-+...+-.+ .+.+ ||.|.+.+||.+||...++..+.||.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 5899999998777662 689999999999988765421111 1223 999999999999999999999999999
Q ss_pred eeeccC
Q 043470 84 RISWSC 89 (629)
Q Consensus 84 ~I~~s~ 89 (629)
+..|-.
T Consensus 196 katYGT 201 (480)
T COG5175 196 KATYGT 201 (480)
T ss_pred eeecCc
Confidence 887654
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.65 E-value=0.0061 Score=59.69 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCCeEEEEEeeCCCCC--eeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 307 DEELKAHFSQCGTITSAKVMRDEKGI--NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 307 ~~~l~~~F~~~G~v~~~~v~~~~~g~--~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
++++++.+++||.|..|.|+.+++-. ----.||+|+..++|.+|+-.|||+.|+|+.+...|-+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 46789999999999999999885321 1123799999999999999999999999999988876533
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.63 E-value=0.00087 Score=64.72 Aligned_cols=63 Identities=22% Similarity=0.363 Sum_probs=53.5
Q ss_pred HHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 26 GELFDAFS-EFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 26 ~~L~~~Fs-~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
++|+..|+ +||+|+++.||.. ..-.-.|-+||.|...++|++|++.||+.-+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45666666 9999999999964 334467899999999999999999999999999999887765
No 178
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.51 E-value=0.0021 Score=61.97 Aligned_cols=74 Identities=23% Similarity=0.389 Sum_probs=62.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC--------CCcc----eEEEEEeCCHHHHHHHHHhcCCce
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTT--------GRST----CYGYVNFLSPHDAIRAIEVKNHTQ 77 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t--------~~s~----G~AfV~F~~~~~A~~Al~~ln~~~ 77 (629)
..-.||+++||+.++-.-|+++|+.||.|-.|.+-....+ +.+. --++|+|.+...|.++-+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988876544 2222 236799999999999999999999
Q ss_pred ecCeee
Q 043470 78 LHGKML 83 (629)
Q Consensus 78 i~g~~i 83 (629)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998643
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.49 E-value=0.013 Score=49.33 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=51.7
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEE-EeeC-------CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK-VMRD-------EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~-v~~~-------~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~ 363 (629)
..+.|.|=+.|.. ....|.++|++||+|.+.. +.++ +.-....+..|+|+++.+|.+||. .||..|+|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3456888898887 5566889999999997775 1111 001123489999999999999996 7999998864
Q ss_pred -EEEEecc
Q 043470 364 -LYVAIAQ 370 (629)
Q Consensus 364 -l~v~~a~ 370 (629)
+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4577763
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.41 E-value=0.012 Score=49.57 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=50.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEe-ecC------CCCCcceEEEEEeCCHHHHHHHHHhcCCceecCee
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVC-KDS------TTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKM 82 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~-rd~------~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~ 82 (629)
..+.|.|-+.|++ ....|.+.|++||.|++..-+ ++. .......+-.|.|.++.+|.+||.. |+..|.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4567888888888 556777889999999887511 100 0001234889999999999999975 999998854
Q ss_pred e-eeecc
Q 043470 83 L-RISWS 88 (629)
Q Consensus 83 i-~I~~s 88 (629)
+ -|.|.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 45554
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.39 E-value=0.015 Score=52.05 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccchHH
Q 043470 308 EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKED 374 (629)
Q Consensus 308 ~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~~ 374 (629)
.+|.+.|..||+|.-+++..+ .-+|+|.+-+.|.+|+. ++|..++|+.|.|++..+.-.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 367788999999998888764 68999999999999995 999999999999999875443
No 182
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.36 E-value=0.0023 Score=61.66 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=60.2
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC---------CCeee----EEEEEeCCHHHHHHHHHHhCCcee
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK---------GINKG----FGFVCFSSPEEASKAVNTFHGYML 359 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~---------g~~kg----~~fV~f~~~~~A~~A~~~l~~~~~ 359 (629)
.-.||+++||...+-..||++|+.||.|-.|.+-.... |..++ -|.|+|.+-..|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 34799999999999999999999999999999876531 22222 268999999999999999999999
Q ss_pred CCeE
Q 043470 360 HRKP 363 (629)
Q Consensus 360 ~g~~ 363 (629)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9865
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.22 E-value=0.0074 Score=64.63 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=67.3
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhc-CCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee---CCeEEEE
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQ-CGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML---HRKPLYV 366 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~---~g~~l~v 366 (629)
..+..|||.||-.-+|.-.|++++.+ .|.|++..|-+ -|-.|||.|.+.++|......|||... +.|.|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 35678999999999999999999995 66777664432 345899999999999999999999776 6899999
Q ss_pred EeccchHHHH
Q 043470 367 AIAQRKEDRQ 376 (629)
Q Consensus 367 ~~a~~k~~~~ 376 (629)
.|....+...
T Consensus 517 df~~~deld~ 526 (718)
T KOG2416|consen 517 DFVRADELDK 526 (718)
T ss_pred eecchhHHHH
Confidence 9998776654
No 184
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.20 E-value=0.014 Score=52.22 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=54.2
Q ss_pred CCCCCeEEEcCCCC------CCCH---HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee
Q 043470 8 ATTPASLYVGDLHP------DVTD---GELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQL 78 (629)
Q Consensus 8 ~~~~~sLyV~nLp~------~~te---~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i 78 (629)
+++..||.|.=+.+ ...+ .+|.+.|+.||.|.-||+..+ .-+|.|.+.++|-+|++ +++..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 34445888876662 2332 367899999999999999876 36999999999999996 799999
Q ss_pred cCeeeeeeccCCC
Q 043470 79 HGKMLRISWSCRD 91 (629)
Q Consensus 79 ~g~~i~I~~s~~~ 91 (629)
.|+.++|.....+
T Consensus 95 ~g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 NGRTLKIRLKTPD 107 (146)
T ss_dssp TTEEEEEEE----
T ss_pred CCEEEEEEeCCcc
Confidence 9999999855444
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.50 E-value=0.044 Score=53.88 Aligned_cols=64 Identities=25% Similarity=0.381 Sum_probs=52.0
Q ss_pred HHHHHHHhcccCCeeEEEEeeCCCC--CceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEeccc
Q 043470 204 EEHLVEKFSKFGKIASLLIARDENG--TSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267 (629)
Q Consensus 204 ~e~L~~~F~~~G~v~~~~v~~~~~g--~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~ 267 (629)
++++.+.+++||.|..|.|.-..+. .-.-..||+|++.++|.+|+-.|||..|+|+.+......
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4678889999999999988766421 112257999999999999999999999999998876654
No 186
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.34 E-value=0.035 Score=59.33 Aligned_cols=74 Identities=24% Similarity=0.422 Sum_probs=59.9
Q ss_pred cccccccCCCCCc------CHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 043470 190 YTNLFMKNLDSDV------TEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYA 263 (629)
Q Consensus 190 ~~~v~V~nLp~~~------t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v 263 (629)
.+.|+|.|+|.-- -..-|..+|+++|.+..+.+..+..|.++||.|++|.+..+|..|++.|||+.+.-..-..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4567777776542 1234567899999999999998988889999999999999999999999999887554333
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.17 E-value=0.088 Score=46.48 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=59.9
Q ss_pred CCCCCeEEEcCCCCCCCH----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 8 ATTPASLYVGDLHPDVTD----GELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te----~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
.++-.+|.|+=|..++.. ..+-..++.||+|.+|..|-.. .|.|.|.+..+|=+|+..++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 345568999888776544 3356678999999999999532 599999999999999998776 6678888
Q ss_pred eeeccCCC
Q 043470 84 RISWSCRD 91 (629)
Q Consensus 84 ~I~~s~~~ 91 (629)
+..|-++-
T Consensus 155 qCsWqqrF 162 (166)
T PF15023_consen 155 QCSWQQRF 162 (166)
T ss_pred Eeeccccc
Confidence 88887753
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.90 E-value=0.31 Score=41.98 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=58.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC---e
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG---K 81 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g---~ 81 (629)
++.+....+.+.-.|.-++-++|..+.+.+- .|..+||+||.. .+.-.+.+.|.+.++|....+.+|+..+.. .
T Consensus 8 ~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE 85 (110)
T PF07576_consen 8 PDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPE 85 (110)
T ss_pred CCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCCc
Confidence 3444455555555555666677777777664 678999999854 366789999999999999999999987753 4
Q ss_pred eeeeecc
Q 043470 82 MLRISWS 88 (629)
Q Consensus 82 ~i~I~~s 88 (629)
.|.|.|.
T Consensus 86 ~ChvvfV 92 (110)
T PF07576_consen 86 TCHVVFV 92 (110)
T ss_pred eeEEEEE
Confidence 5655443
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.90 E-value=0.074 Score=42.62 Aligned_cols=58 Identities=21% Similarity=0.385 Sum_probs=44.4
Q ss_pred cccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 043470 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMN 252 (629)
Q Consensus 188 ~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~ 252 (629)
.....||--.+|.+|...||.++|+.||.| .+..+.|. -|||...+.+.+..++..+.
T Consensus 6 P~RdHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 6 PSRDHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -SGCCEEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred CCcceEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 344567767799999999999999999998 67777653 59999999999999988875
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.88 E-value=0.055 Score=57.76 Aligned_cols=70 Identities=21% Similarity=0.380 Sum_probs=58.0
Q ss_pred cceeeeecCCCCCCHHHHHHHHhc--CCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEEe
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQ--CGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG--YMLHRKPLYVAI 368 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~--~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~--~~~~g~~l~v~~ 368 (629)
.|.|.++-|++.+-.|+++.+|+. +-.+.+|.+..+.+ .||+|++..||+.|.+.|.. +.|.||+|...+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 366889999999999999999975 77899999987643 79999999999999987754 567787775443
No 191
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.56 E-value=0.03 Score=60.11 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=61.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee---cC
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFS-EFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQL---HG 80 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs-~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i---~g 80 (629)
|+-...+..|||.||-...|.-+|.+++. ..|.|++.+| |++ +..|||.|.+.++|..-+..||+..+ ++
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh----hcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 44555677999999999999999999998 5557776633 433 33799999999999999999999754 34
Q ss_pred eeeeeeccCCC
Q 043470 81 KMLRISWSCRD 91 (629)
Q Consensus 81 ~~i~I~~s~~~ 91 (629)
+.|.+.|...+
T Consensus 512 K~L~adf~~~d 522 (718)
T KOG2416|consen 512 KHLIADFVRAD 522 (718)
T ss_pred ceeEeeecchh
Confidence 66666655443
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.55 E-value=0.13 Score=41.32 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=43.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCC
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~ 75 (629)
+......||+ .|......||+++|+.||.| .|.-+-| | .|||...+.+.|..++..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d--T-----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND--T-----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT--T-----EEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC--C-----cEEEEeecHHHHHHHHHHhcc
Confidence 3344477787 89999999999999999974 4444444 2 599999999999999988765
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.32 E-value=0.051 Score=51.24 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=46.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhc-CCCe---eEEEEeecC-CCC-CcceEEEEEeCCHHHHHHHHHhcCCceec
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSE-FKSL---ASVRVCKDS-TTG-RSTCYGYVNFLSPHDAIRAIEVKNHTQLH 79 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~-~G~V---~si~v~rd~-~t~-~s~G~AfV~F~~~~~A~~Al~~ln~~~i~ 79 (629)
.....|.|+.||+..||+++.+.++. ++.- ..+.-..+. ..+ ....-|||.|.+.+++....+.+++..|.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 34568999999999999999998877 5544 233211221 111 12456999999999999999999997664
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.10 E-value=0.14 Score=48.54 Aligned_cols=62 Identities=29% Similarity=0.281 Sum_probs=47.5
Q ss_pred CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcC--CceecCeeeeeeccCCC
Q 043470 24 TDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKN--HTQLHGKMLRISWSCRD 91 (629)
Q Consensus 24 te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln--~~~i~g~~i~I~~s~~~ 91 (629)
..+.|+++|..++.+.++.+.+ +.+=..|.|.+.++|++|...|+ +..+.|..+++.|.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4578999999999999998886 44568999999999999999999 89999999999998544
No 195
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.08 E-value=0.28 Score=37.33 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=42.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcC----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEF----KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~----G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~l 73 (629)
.+|+|+++. +.+.++|+.+|..| ++ ..|.=+-|. -|=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999984 58889999999999 53 456556663 3889999999999999754
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.91 E-value=0.27 Score=37.43 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=43.6
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcC---CCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQC---GTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~---G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l 354 (629)
..|+|.+++ +.+-++|+.+|..| .....|.-+.|. -|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 469999985 58888899999999 235667777763 3889999999999999754
No 197
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=93.72 E-value=0.43 Score=45.61 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=6.8
Q ss_pred eEEEEEeCCHHHHHH
Q 043470 335 GFGFVCFSSPEEASK 349 (629)
Q Consensus 335 g~~fV~f~~~~~A~~ 349 (629)
|.++-|+.-..+...
T Consensus 49 glsihcmqvhketid 63 (341)
T KOG2893|consen 49 GLSIHCMQVHKETID 63 (341)
T ss_pred Cceeehhhhhhhhhh
Confidence 445555544444333
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.61 E-value=0.18 Score=44.58 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=55.2
Q ss_pred cccceeeeecCCCCC----CHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 043470 291 YKGSNVYVKNIDDDV----TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~----t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 366 (629)
.+-.+|.|+=|..++ +-..+...++.||.|.+|...- +--|.|.|.+..+|-+|+.+++. ..-|..+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 344577776665553 2234455678899999999864 34699999999999999999887 566788888
Q ss_pred Eeccc
Q 043470 367 AIAQR 371 (629)
Q Consensus 367 ~~a~~ 371 (629)
+|-++
T Consensus 157 sWqqr 161 (166)
T PF15023_consen 157 SWQQR 161 (166)
T ss_pred ecccc
Confidence 88653
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.09 E-value=0.033 Score=56.29 Aligned_cols=79 Identities=22% Similarity=0.401 Sum_probs=62.0
Q ss_pred ceeeeecCCCCCCHHHHH---HHHhcCCCeEEEEEeeCCC--CCeee--EEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 043470 294 SNVYVKNIDDDVTDEELK---AHFSQCGTITSAKVMRDEK--GINKG--FGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~---~~F~~~G~v~~~~v~~~~~--g~~kg--~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 366 (629)
.-+||-+|+....++.+. +.|.+||.|.+|.+..+.. ..+-+ -++|+|...++|..||...+|...+|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 347888998887766664 4789999999999988762 11111 2799999999999999999999999999877
Q ss_pred Eeccch
Q 043470 367 AIAQRK 372 (629)
Q Consensus 367 ~~a~~k 372 (629)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 777544
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.62 E-value=0.56 Score=36.26 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 22 DVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 22 ~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
.++-++++..+..|+- ..| ..|+ .|| ||.|.+..+|++|....++..+.+-.+.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 6788999999999973 444 4442 256 9999999999999999998887765543
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.58 E-value=0.072 Score=59.65 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=64.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee--cCeeeeeeccCC
Q 043470 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQL--HGKMLRISWSCR 90 (629)
Q Consensus 13 sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i--~g~~i~I~~s~~ 90 (629)
..++.|.+-..+..-|.-+|+.||.|.+++..||-. .|.|.|.+.+.|..|++.|++.++ -|-+.+|++++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 567778888899999999999999999999998855 799999999999999999999866 488999998873
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.99 E-value=1.1 Score=38.49 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=51.5
Q ss_pred eeeeecCCCCCCHHHHHHHHhcC-CCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQC-GTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~~-G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g 361 (629)
.+-+...++.++.++|..+.+.+ ..|..++|++|.. ..+--+.+.|.+.++|..-...+||+.|+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34455566667777887666666 4788999998743 256678999999999999999999999874
No 203
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.47 E-value=0.68 Score=36.80 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHhcCC-----CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 303 DDVTDEELKAHFSQCG-----TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 303 ~~~t~~~l~~~F~~~G-----~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
+.++..+|..++..-+ .|-.|.|..+ |.||+-.. +.|..+++.|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5688888888887764 6678888776 99999887 6899999999999999999999875
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.04 E-value=0.12 Score=54.24 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=58.3
Q ss_pred ceeeeecCCCCC-CHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 294 SNVYVKNIDDDV-TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 294 ~~l~V~nl~~~~-t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
+.|-+.-.+... |-++|..+|..||+|..|.|-.. .--|.|+|.+..+|-+|.. .++..|+++.|+|.|.+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 344455555553 55889999999999999998664 2369999999999988885 799999999999999864
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.62 E-value=0.51 Score=44.66 Aligned_cols=60 Identities=28% Similarity=0.276 Sum_probs=46.0
Q ss_pred CHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEecc
Q 043470 306 TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH--GYMLHRKPLYVAIAQ 370 (629)
Q Consensus 306 t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~--~~~~~g~~l~v~~a~ 370 (629)
..+.|+++|..|+.+....+++. -+-..|.|.+.++|.+|...++ +..+.|+.++|-|++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999988888764 3357899999999999999999 999999999999984
No 206
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.30 E-value=0.19 Score=52.91 Aligned_cols=77 Identities=16% Similarity=0.274 Sum_probs=61.4
Q ss_pred CCCCeEEEcCCCCCCC-HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 9 TTPASLYVGDLHPDVT-DGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~t-e~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
...+.|-+.-.|...+ .++|...|.+||.|..|.|--. .--|.|.|.+..+|-+|-. ..+..|+|+.|+|.|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 3456677777777654 5899999999999999988543 1248999999999976664 589999999999999
Q ss_pred cCCCC
Q 043470 88 SCRDP 92 (629)
Q Consensus 88 s~~~~ 92 (629)
.+..+
T Consensus 443 hnps~ 447 (526)
T KOG2135|consen 443 HNPSP 447 (526)
T ss_pred ecCCc
Confidence 88654
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.21 E-value=1.2 Score=34.41 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 043470 304 DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366 (629)
Q Consensus 304 ~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 366 (629)
.++-++++..+..|+ -.+|..|.+| =||.|.+.++|.++....+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999995 3345566554 389999999999999999999988777654
No 208
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=90.10 E-value=6.4 Score=39.42 Aligned_cols=183 Identities=13% Similarity=0.213 Sum_probs=108.9
Q ss_pred ccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC--------CCCceeEEEEEeCCHHHHHHHHH----HhC--CC
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE--------NGTSRGFGFVNFDNPDDARRALE----AMN--GS 254 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~--------~g~s~g~afV~F~~~e~A~~Av~----~l~--g~ 254 (629)
..+.+.+.|+..+++-..+-..|-+||.|+++.++.+. ..+......+.|-+.+.+-.... .|+ ..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999998765 23444577888988876654322 221 12
Q ss_pred eeCCeEEEEecccch---HHH-HHH--Hh-hh-hHHHHHHhhhhcccceeeeecCCCCC-CHHHHHHHHh---cCC----
Q 043470 255 VIGSKVLYAARAQKK---AER-EQI--LR-HQ-FEEKRKERILKYKGSNVYVKNIDDDV-TDEELKAHFS---QCG---- 318 (629)
Q Consensus 255 ~~~g~~l~v~~a~~~---~~~-~~~--~~-~~-~~~~~~~~~~~~~~~~l~V~nl~~~~-t~~~l~~~F~---~~G---- 318 (629)
.+....|.+....-+ ... +.+ .. .. .....-+-.....+++|.|.-= ..+ +++-+.+.+. .=+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 244444444433211 000 000 00 00 0111112223344566776644 344 3333333331 112
Q ss_pred CeEEEEEeeCC---CCCeeeEEEEEeCCHHHHHHHHHHhC--CceeC-CeEEEEEeccch
Q 043470 319 TITSAKVMRDE---KGINKGFGFVCFSSPEEASKAVNTFH--GYMLH-RKPLYVAIAQRK 372 (629)
Q Consensus 319 ~v~~~~v~~~~---~g~~kg~~fV~f~~~~~A~~A~~~l~--~~~~~-g~~l~v~~a~~k 372 (629)
.+++|.++.-. +.-++.||.++|-+..=|...++-+. +...+ .+...|.++...
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~~ 232 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPHA 232 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCcc
Confidence 57888887653 34467899999999999988887554 44444 677888877644
No 209
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=89.97 E-value=6.2 Score=39.53 Aligned_cols=154 Identities=15% Similarity=0.228 Sum_probs=97.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC-------CCCCcceEEEEEeCCHHHHHHH----HHhcCC
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDS-------TTGRSTCYGYVNFLSPHDAIRA----IEVKNH 75 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~-------~t~~s~G~AfV~F~~~~~A~~A----l~~ln~ 75 (629)
+.-.+|+|...|+..+++-..+...|-+||+|++|.++.+. ..........+-|-+.+.+-.. ++.|+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999875 1112335678899998875433 222221
Q ss_pred --ceecCeeeeeeccCC-----C----C---------------CcccCCcccccccccchhhhhHHH-H---HHHccCCC
Q 043470 76 --TQLHGKMLRISWSCR-----D----P---------------DARKSGVANLFVKNLIESIDNVRL-Q---EMFQNFGN 125 (629)
Q Consensus 76 --~~i~g~~i~I~~s~~-----~----~---------------~~~~s~~~~v~V~nLp~~it~~~L-~---~~fs~fG~ 125 (629)
+.++...+.+.|..- + . -.....++.|.|.=- ..++.+++ . .++..-++
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCC
Confidence 245566666665541 0 0 011222344444322 22323222 2 23333343
Q ss_pred ----eeEeEEeeCC---CCCccceEEEEEcCHHHHHHHHHHhC
Q 043470 126 ----IISCKVATSE---DGKSKGHGFVQFETEESANAAIENLN 161 (629)
Q Consensus 126 ----I~s~kv~~d~---~g~skg~afV~f~~~e~A~~Ai~~ln 161 (629)
++++.++... ....+.||.++|-+..-|.+.++-+.
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 5666666543 55678899999999999999988655
No 210
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.33 E-value=0.15 Score=51.57 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=59.5
Q ss_pred eEEEcCCCCCCCHHHH---HHHHhcCCCeeEEEEeecCC-CCC--cceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 13 SLYVGDLHPDVTDGEL---FDAFSEFKSLASVRVCKDST-TGR--STCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 13 sLyV~nLp~~~te~~L---~~~Fs~~G~V~si~v~rd~~-t~~--s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
-+||-+|+..+..+.+ .+.|.+||.|.+|.+.++.. ... ...-+||.|...+||.+||+..++....|+.++..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 5678888877655544 47899999999999998763 111 23348999999999999999999999999887665
Q ss_pred ccC
Q 043470 87 WSC 89 (629)
Q Consensus 87 ~s~ 89 (629)
+..
T Consensus 159 ~gt 161 (327)
T KOG2068|consen 159 LGT 161 (327)
T ss_pred hCC
Confidence 443
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.71 E-value=0.9 Score=45.29 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=45.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 14 LYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 14 LyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
|-|-+.|+.. -..|..+|++||.|++...-+ .--+-+|.|.+..+|.+||.. |++.|.|..+
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 3344555432 356788999999988764432 234899999999999999975 8888887544
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.55 E-value=1 Score=44.88 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=55.6
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEeccc
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK-PLYVAIAQR 371 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~-~l~v~~a~~ 371 (629)
...|-|-+++..- -.-|..+|++||+|.+..-. .+| .|-.|.|.+.-+|.+||. .||++|+|. -|-|+-+..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~ng---NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--SNG---NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC--CCC---ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 3456666766543 34578899999999876654 233 389999999999999996 799999875 445666666
Q ss_pred hHHH
Q 043470 372 KEDR 375 (629)
Q Consensus 372 k~~~ 375 (629)
|...
T Consensus 270 ksvi 273 (350)
T KOG4285|consen 270 KSVI 273 (350)
T ss_pred HHHh
Confidence 6554
No 213
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.30 E-value=2.1 Score=46.17 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=58.4
Q ss_pred HHHHHHHhCCCcccCceeeeecccccCCCCCCCCccccccccccCCCCCcCHHHHHHHhcc--cCCeeEEEEeeCCCCCc
Q 043470 153 ANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSK--FGKIASLLIARDENGTS 230 (629)
Q Consensus 153 A~~Ai~~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~--~G~v~~~~v~~~~~g~s 230 (629)
..++++..-+..+..+-..|.. ..+.+-|.++.|+..+..|+++.+|+. +-.+.+|.+..+.
T Consensus 150 I~Evlresp~VqvDekgekVrp------------~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---- 213 (684)
T KOG2591|consen 150 IVEVLRESPNVQVDEKGEKVRP------------NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---- 213 (684)
T ss_pred HHHHHhcCCCceeccCcccccc------------CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----
Confidence 3455554444555554444422 223456788999999999999999964 6678888886543
Q ss_pred eeEEEEEeCCHHHHHHHHHHhC
Q 043470 231 RGFGFVNFDNPDDARRALEAMN 252 (629)
Q Consensus 231 ~g~afV~F~~~e~A~~Av~~l~ 252 (629)
-.||+|++..||+.|.+.|.
T Consensus 214 --nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 214 --NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred --ceEEEeecchhHHHHHHHHH
Confidence 47999999999999998764
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=85.82 E-value=0.52 Score=53.13 Aligned_cols=72 Identities=28% Similarity=0.349 Sum_probs=62.3
Q ss_pred eeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEEeccch
Q 043470 296 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML--HRKPLYVAIAQRK 372 (629)
Q Consensus 296 l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~~a~~k 372 (629)
.++.|..-..+..-|-.+|+.||.|.+++-.++-+ .+.|.|.+.+.|..|++.++|+.+ .|-+.+|.+|+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 45666677788899999999999999999988755 699999999999999999999886 4788999998744
No 215
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.71 E-value=1.5 Score=41.24 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=50.5
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhc-CCCe---EEEEEeeCC--CC-CeeeEEEEEeCCHHHHHHHHHHhCCceeCC---
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQ-CGTI---TSAKVMRDE--KG-INKGFGFVCFSSPEEASKAVNTFHGYMLHR--- 361 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v---~~~~v~~~~--~g-~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g--- 361 (629)
.++.|.|++||...|++++.+.++. ++.- ..+.-.... .. ..-.-|+|.|.+.+++..-...++|..|-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999998887 6655 233311221 11 122358999999999999999999987732
Q ss_pred --eEEEEEecc
Q 043470 362 --KPLYVAIAQ 370 (629)
Q Consensus 362 --~~l~v~~a~ 370 (629)
.+..|.+|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 355666664
No 216
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=85.62 E-value=36 Score=32.94 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=15.8
Q ss_pred CCCeeeEEEEEeCCHHHHHHHHH
Q 043470 330 KGINKGFGFVCFSSPEEASKAVN 352 (629)
Q Consensus 330 ~g~~kg~~fV~f~~~~~A~~A~~ 352 (629)
-|.+--|--|.-++.+..-.|+.
T Consensus 48 pglsihcmqvhketid~ip~av~ 70 (341)
T KOG2893|consen 48 PGLSIHCMQVHKETIDKIPAAVH 70 (341)
T ss_pred CCceeehhhhhhhhhhccccccc
Confidence 35566677777777777777764
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.10 E-value=2.7 Score=44.40 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=59.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG 80 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g 80 (629)
+++.|.|--+|..+|-.||..++..+- .|.+|+++||..- +.-...|.|.+.+||..+-+.+|+..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 378999999999999999999887765 7899999998543 45578899999999999999999987753
No 218
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.07 E-value=0.056 Score=59.14 Aligned_cols=72 Identities=22% Similarity=0.263 Sum_probs=62.2
Q ss_pred CccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEec
Q 043470 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAAR 265 (629)
Q Consensus 186 ~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~ 265 (629)
......+|||+|+...+..+-+..+...+|.|.++.... |||..|..+.....|+..++...+++..+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345567899999999999999999999999998876654 999999999999999999988888888776654
No 219
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=83.97 E-value=0.53 Score=51.80 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=63.9
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++||+|+...+.++-++.+...+|.|.+++... |||+.|.....+.+|+..++...++|+.+.+...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 456899999999999999999999999999999876 9999999999999999999999999988877764
No 220
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.78 E-value=4.1 Score=44.36 Aligned_cols=79 Identities=24% Similarity=0.251 Sum_probs=62.9
Q ss_pred hcccceeeeecCCCC-CCHHHHHHHHhcC----CCeEEEEEeeCCC-----------CC---------------------
Q 043470 290 KYKGSNVYVKNIDDD-VTDEELKAHFSQC----GTITSAKVMRDEK-----------GI--------------------- 332 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~-~t~~~l~~~F~~~----G~v~~~~v~~~~~-----------g~--------------------- 332 (629)
...+.+|-|-|++|. +..++|.-+|+.| |.|.+|.|..... |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445678999999997 8899999999887 6999999977542 22
Q ss_pred ----------------eeeEEEEEeCCHHHHHHHHHHhCCceeCCe--EEEEEe
Q 043470 333 ----------------NKGFGFVCFSSPEEASKAVNTFHGYMLHRK--PLYVAI 368 (629)
Q Consensus 333 ----------------~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~--~l~v~~ 368 (629)
.--||.|+|.+.+.|.+......|..|..- .+.+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 124799999999999999999999998744 444444
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.45 E-value=5.1 Score=31.75 Aligned_cols=57 Identities=16% Similarity=0.359 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHhcCC-----CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 22 DVTDGELFDAFSEFK-----SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 22 ~~te~~L~~~Fs~~G-----~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
.++..+|..++...+ .|-.|+|..+ |+||+-.. +.|+.+++.|++..++|++++|..
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 577788888887774 4567888765 88998654 488999999999999999999864
No 222
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.01 E-value=5.7 Score=42.05 Aligned_cols=77 Identities=26% Similarity=0.378 Sum_probs=63.0
Q ss_pred cccccccCCCCCcCHHHHHHHhcccC-CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCC------eEEE
Q 043470 190 YTNLFMKNLDSDVTEEHLVEKFSKFG-KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGS------KVLY 262 (629)
Q Consensus 190 ~~~v~V~nLp~~~t~e~L~~~F~~~G-~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g------~~l~ 262 (629)
.+.|+|-.+|..++..||..++..+- .|..+.+++|.. ..+-...|.|.+.++|....+.+||+.|+. ..|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~ 152 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM-PNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLY 152 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC-CceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEE
Confidence 67899999999999999999988765 578899999654 445578999999999999999999999864 3455
Q ss_pred Eeccc
Q 043470 263 AARAQ 267 (629)
Q Consensus 263 v~~a~ 267 (629)
|.+..
T Consensus 153 V~~ve 157 (493)
T KOG0804|consen 153 VDRVE 157 (493)
T ss_pred EEEEE
Confidence 55443
No 223
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.25 E-value=11 Score=41.24 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=65.7
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhcC----CCeeEEEEeecC----------CCC---------------------
Q 043470 7 TATTPASLYVGDLHPD-VTDGELFDAFSEF----KSLASVRVCKDS----------TTG--------------------- 50 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~-~te~~L~~~Fs~~----G~V~si~v~rd~----------~t~--------------------- 50 (629)
-...+++|-|=||.++ +.-.+|+-+|+.| |.|.+|.||... ++|
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 4667889999999995 7778999999988 699999999521 111
Q ss_pred ----------------CcceEEEEEeCCHHHHHHHHHhcCCceec--CeeeeeeccCC
Q 043470 51 ----------------RSTCYGYVNFLSPHDAIRAIEVKNHTQLH--GKMLRISWSCR 90 (629)
Q Consensus 51 ----------------~s~G~AfV~F~~~~~A~~Al~~ln~~~i~--g~~i~I~~s~~ 90 (629)
.-.-||.|.|.+.+.|...-+.+.+..+. +..+-++|-..
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 23468899999999999999999998886 45566655543
No 224
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=72.20 E-value=2.6 Score=39.03 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=56.6
Q ss_pred eEEEcCCCCCCCH-----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCe-eeeee
Q 043470 13 SLYVGDLHPDVTD-----GELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGK-MLRIS 86 (629)
Q Consensus 13 sLyV~nLp~~~te-----~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~-~i~I~ 86 (629)
++.+-+++..+.. +.-..+|.+|.+....+++| +++.--|+|.+++.|..|.-.++...|.|+ .+...
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 5677777775433 23467788887777666665 556788999999999999999999999998 88888
Q ss_pred ccCCC
Q 043470 87 WSCRD 91 (629)
Q Consensus 87 ~s~~~ 91 (629)
+.+..
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 87754
No 225
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=67.35 E-value=3.2 Score=34.09 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=44.6
Q ss_pred EEEEeCCHHHHHHHHHhcCCc-eecCeeeeeeccCCC-------CCcccCCcccccccccchhhhhHHHHHHHc
Q 043470 56 GYVNFLSPHDAIRAIEVKNHT-QLHGKMLRISWSCRD-------PDARKSGVANLFVKNLIESIDNVRLQEMFQ 121 (629)
Q Consensus 56 AfV~F~~~~~A~~Al~~ln~~-~i~g~~i~I~~s~~~-------~~~~~s~~~~v~V~nLp~~it~~~L~~~fs 121 (629)
|+|.|.+..-|++-++.-.+. .+.+..++|.-+.-. .-......++|.|.|||...++++|+|..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999753332 444555555433211 111223457899999999999999987644
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=67.24 E-value=21 Score=29.06 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=45.9
Q ss_pred eeeeecCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQ-CG-TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l 354 (629)
+-|+-.++...+..+|++.++. || .|.+|..+.-..|. --|||++..-++|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~--KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE--KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--EEEEEEeCCCCcHHHHHHhh
Confidence 5677778899999999999988 66 77888887765443 35999999988888876543
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=66.16 E-value=4.5 Score=37.55 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=51.0
Q ss_pred ceeeeecCCCCCCH-----HHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEE
Q 043470 294 SNVYVKNIDDDVTD-----EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK-PLYVA 367 (629)
Q Consensus 294 ~~l~V~nl~~~~t~-----~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~-~l~v~ 367 (629)
+.+.+.+++..+.. .....+|..|-+.....+++ +.++.-|.|.+.+.|..|...+++..|.|+ .+..-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 45667777665332 33445555555444444443 456778899999999999999999999998 78777
Q ss_pred eccc
Q 043470 368 IAQR 371 (629)
Q Consensus 368 ~a~~ 371 (629)
+++.
T Consensus 86 faQ~ 89 (193)
T KOG4019|consen 86 FAQP 89 (193)
T ss_pred EccC
Confidence 7764
No 228
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=66.12 E-value=14 Score=33.49 Aligned_cols=115 Identities=15% Similarity=0.098 Sum_probs=72.9
Q ss_pred EEEcCCC--CCCCHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCC
Q 043470 14 LYVGDLH--PDVTDGELFDAFSEF-KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR 90 (629)
Q Consensus 14 LyV~nLp--~~~te~~L~~~Fs~~-G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~ 90 (629)
..||.+- .+.+-..|.+.+... +....+.+..- ..++..+.|.+.+|+.++++. ....+.|..+.+..-..
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSP 91 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcc
Confidence 3344442 345666676666553 33223333321 235889999999999999974 66677887777763332
Q ss_pred CCCcccC----Ccccccccccchh-hhhHHHHHHHccCCCeeEeEEeeC
Q 043470 91 DPDARKS----GVANLFVKNLIES-IDNVRLQEMFQNFGNIISCKVATS 134 (629)
Q Consensus 91 ~~~~~~s----~~~~v~V~nLp~~-it~~~L~~~fs~fG~I~s~kv~~d 134 (629)
+...... -.-=|.|.|||.. .+++.+..+.+.+|.+..+...+.
T Consensus 92 ~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 92 DFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 2211111 1223667899988 577888999999999987766543
No 229
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=65.61 E-value=8.6 Score=34.94 Aligned_cols=86 Identities=15% Similarity=0.030 Sum_probs=59.8
Q ss_pred ccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccccCCCCCCCCccccccccccCCCCC-cCHHHHHHHhcccCCe
Q 043470 139 SKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSD-VTEEHLVEKFSKFGKI 217 (629)
Q Consensus 139 skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~-~t~e~L~~~F~~~G~v 217 (629)
..++..++|.+.+++.++++. ....+.+..+.+..+.+..............=|.|.+||.. ++++-++.+.+.+|.+
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~ 132 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEP 132 (153)
T ss_pred CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCe
Confidence 457899999999999999973 44556777777776654333211111112223667899998 6888899999999999
Q ss_pred eEEEEeeC
Q 043470 218 ASLLIARD 225 (629)
Q Consensus 218 ~~~~v~~~ 225 (629)
..+...+.
T Consensus 133 i~vD~~t~ 140 (153)
T PF14111_consen 133 IEVDENTL 140 (153)
T ss_pred EEEEcCCC
Confidence 88766543
No 230
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=65.00 E-value=27 Score=28.00 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=45.4
Q ss_pred eeeeecCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQ-CG-TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF 354 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l 354 (629)
+-|+-.++.+.+..+|++.++. || .|.+|..+.-+.+.. -|||++..-+.|......+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~K--KA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEK--KAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCce--EEEEEECCCCcHHHHHHhh
Confidence 5788888999999999999988 66 778888777654432 5999998888888776543
No 231
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=56.92 E-value=13 Score=38.82 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=47.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEee-cCCCCC-cceEEEEEeCCHHHHHHHHHhcCCcee
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFK-SLASVRVCK-DSTTGR-STCYGYVNFLSPHDAIRAIEVKNHTQL 78 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G-~V~si~v~r-d~~t~~-s~G~AfV~F~~~~~A~~Al~~ln~~~i 78 (629)
-..+.|..||+..++++|.+..+.+- .|....... +..... -.+.|||+|.+.++.....+.+++..|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 35788999999999999988888764 333333332 111111 146799999999998888887777544
No 232
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.19 E-value=27 Score=36.48 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=45.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCce
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~ 77 (629)
..|-|.|.|.....+||...|+.|+. ..++|.+--.| .||-.|.+...|..||- +.+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdt-----halaVFss~~~AaeaLt-~kh~~ 450 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDT-----HALAVFSSVNRAAEALT-LKHDW 450 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecc-----eeEEeecchHHHHHHhh-ccCce
Confidence 37899999999999999999999974 34444432222 69999999999999995 45443
No 233
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=54.59 E-value=1.3e+02 Score=34.50 Aligned_cols=6 Identities=50% Similarity=0.506 Sum_probs=2.3
Q ss_pred HHHHHH
Q 043470 600 AVQVLK 605 (629)
Q Consensus 600 a~~~~~ 605 (629)
|..+|+
T Consensus 553 AS~s~k 558 (830)
T KOG1923|consen 553 ASKSLK 558 (830)
T ss_pred HHhhHH
Confidence 333333
No 234
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=54.17 E-value=9.6 Score=31.33 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=43.6
Q ss_pred EEEEEcCHHHHHHHHHHhCC-CcccCceeee--ecccccCCCC-CCCCccccccccccCCCCCcCHHHHHHHhc
Q 043470 143 GFVQFETEESANAAIENLNG-TTVGDKRIYV--GRFIKKSDRV-LPSPAAKYTNLFMKNLDSDVTEEHLVEKFS 212 (629)
Q Consensus 143 afV~f~~~e~A~~Ai~~lng-~~l~g~~l~v--~~~~~~~~~~-~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~ 212 (629)
|+|+|++.+-|++.++.-.- ..+++..+.| .+.....-.. .-......++|.|.|||...++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999985322 2234444333 2222221110 111223457899999999999999988654
No 235
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.57 E-value=76 Score=34.10 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=9.2
Q ss_pred EEEeCCHHHHHHHHHHhC
Q 043470 338 FVCFSSPEEASKAVNTFH 355 (629)
Q Consensus 338 fV~f~~~~~A~~A~~~l~ 355 (629)
.+.|.+ ++++++.+.+.
T Consensus 318 e~dfSD-DEkEaeak~~k 334 (483)
T KOG2236|consen 318 EQDFSD-DEKEAEAKQMK 334 (483)
T ss_pred hhccch-HHHHHHHHHHH
Confidence 356666 55555555553
No 236
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=52.05 E-value=30 Score=26.94 Aligned_cols=63 Identities=8% Similarity=0.159 Sum_probs=49.3
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCCC
Q 043470 26 GELFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD 91 (629)
Q Consensus 26 ~~L~~~Fs~~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~ 91 (629)
++|.+-|...| +|.+|.-.+...++..+-.-||+.....+... .++=..+.+..+.|.+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 57888899999 88999888888788888888999888777333 34556778889999876543
No 237
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=50.53 E-value=31 Score=36.13 Aligned_cols=131 Identities=21% Similarity=0.283 Sum_probs=76.0
Q ss_pred CCCCCCCCCeEEEcCCCCC-CCHHHHHHHHhcC----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee
Q 043470 4 VPPTATTPASLYVGDLHPD-VTDGELFDAFSEF----KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQL 78 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~-~te~~L~~~Fs~~----G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i 78 (629)
.|..+..+..|-|-||.++ +.-.+|+-+|+.| |+|..|.||.. +|--. .|.-..+
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps------------efGke--------Rm~~e~v 198 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS------------EFGKE--------RMAAEHV 198 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh------------hhhHH--------HHhHhhc
Confidence 5667888899999999995 7778999999988 68888888764 22211 2222233
Q ss_pred cCeeeeeecc-CCCCCcccCCcccccc-----------cccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEE
Q 043470 79 HGKMLRISWS-CRDPDARKSGVANLFV-----------KNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQ 146 (629)
Q Consensus 79 ~g~~i~I~~s-~~~~~~~~s~~~~v~V-----------~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~ 146 (629)
.|-+-.|.-. ...++..+-+..+++. +.+...++--.|++.- + .....-||.|+
T Consensus 199 qGpprdif~~~d~~~ssqk~~~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyq-----l---------erlryYyAvve 264 (622)
T COG5638 199 QGPPRDIFTPADNQPSSQKFGDDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQ-----L---------ERLRYYYAVVE 264 (622)
T ss_pred cCCchhhccccccCcchhccCCccchhhhhcchhhhhhcccccchhHHHHHHHH-----h---------hhheeEEEEEE
Confidence 4433333221 1222223333233222 1111222222222110 0 12234589999
Q ss_pred EcCHHHHHHHHHHhCCCcccCc
Q 043470 147 FETEESANAAIENLNGTTVGDK 168 (629)
Q Consensus 147 f~~~e~A~~Ai~~lng~~l~g~ 168 (629)
+++.+.+...-..+.|..+...
T Consensus 265 c~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 265 CEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred eccchhhHHHHhccCccccccc
Confidence 9999999999999999887553
No 238
>PHA03378 EBNA-3B; Provisional
Probab=48.93 E-value=2.8e+02 Score=31.56 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=4.7
Q ss_pred ceeeeecCC
Q 043470 294 SNVYVKNID 302 (629)
Q Consensus 294 ~~l~V~nl~ 302 (629)
-|||-..|+
T Consensus 539 pcvy~~~l~ 547 (991)
T PHA03378 539 PCVYTEDLD 547 (991)
T ss_pred CceeecccC
Confidence 445555554
No 239
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=46.22 E-value=35 Score=26.58 Aligned_cols=62 Identities=10% Similarity=0.150 Sum_probs=48.7
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCC
Q 043470 26 GELFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR 90 (629)
Q Consensus 26 ~~L~~~Fs~~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~ 90 (629)
++|.+-|..+| +|..|+..+...++...-.-+|+.....+-.. .|+=..+.|+.+.|....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888999999 89999999888788888888999887766555 3455677888899876554
No 240
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=46.17 E-value=82 Score=33.25 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=8.8
Q ss_pred eeeecCCCCCCHHHHHHHHhc
Q 043470 296 VYVKNIDDDVTDEELKAHFSQ 316 (629)
Q Consensus 296 l~V~nl~~~~t~~~l~~~F~~ 316 (629)
+|+-+|+..-.++++-.-|+.
T Consensus 219 f~~p~l~~~g~~d~~ss~~ed 239 (487)
T KOG4672|consen 219 FRVPGLKPPGPPDGLSSNFED 239 (487)
T ss_pred ccccCCCCCCCCccccCCCCC
Confidence 444444444333444333433
No 241
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=42.04 E-value=33 Score=29.82 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=27.1
Q ss_pred eeeeecCCCC---------CCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCH
Q 043470 295 NVYVKNIDDD---------VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSP 344 (629)
Q Consensus 295 ~l~V~nl~~~---------~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~ 344 (629)
.+.|-|++.+ .+.++|++.|+.|..++ ++.+.+..| ..|+++|.|...
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECCC
Confidence 3556666433 35588999999998775 556666554 689999999774
No 242
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=39.62 E-value=94 Score=28.12 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=42.4
Q ss_pred eeeeecCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHH
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQ-CG-TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVN 352 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~ 352 (629)
+-|+--++...+..+|++.++. |+ .|.+|..+..+.|.- -|||++....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHHH
Confidence 5677778889999999999987 66 677777777666543 48999987777665443
No 243
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=38.83 E-value=1.5e+02 Score=31.82 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=3.4
Q ss_pred eeEEEEe
Q 043470 38 LASVRVC 44 (629)
Q Consensus 38 V~si~v~ 44 (629)
|++|.|+
T Consensus 50 lEsi~vv 56 (654)
T COG5180 50 LESIDVV 56 (654)
T ss_pred eeeeeee
Confidence 3455444
No 244
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=38.47 E-value=37 Score=29.52 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=30.9
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHH
Q 043470 13 SLYVGDLHPD---------VTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDA-IRAI 70 (629)
Q Consensus 13 sLyV~nLp~~---------~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A-~~Al 70 (629)
.+.|-|++.. .+.++|.+.|+.|.++ .++.+.+.. ...|++.|.|.+--.. ..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 4566677543 3458899999999986 477776644 4789999999875543 3444
No 245
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=37.78 E-value=70 Score=24.37 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCeEEEEEee
Q 043470 308 EELKAHFSQCGTITSAKVMR 327 (629)
Q Consensus 308 ~~l~~~F~~~G~v~~~~v~~ 327 (629)
.+||++|+..|.|.-+-+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999997666533
No 246
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.70 E-value=1.1e+02 Score=33.02 Aligned_cols=13 Identities=15% Similarity=0.485 Sum_probs=6.9
Q ss_pred EEEEEeCCHHHHH
Q 043470 233 FGFVNFDNPDDAR 245 (629)
Q Consensus 233 ~afV~F~~~e~A~ 245 (629)
|-.|.|.+.+.+.
T Consensus 261 ~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 261 YYVVRFNSEEEIS 273 (483)
T ss_pred eEEEecCchhhhh
Confidence 4455666655443
No 247
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=36.26 E-value=68 Score=24.44 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=16.2
Q ss_pred HHHHHHhcccCCeeEEEEee
Q 043470 205 EHLVEKFSKFGKIASLLIAR 224 (629)
Q Consensus 205 e~L~~~F~~~G~v~~~~v~~ 224 (629)
.+|+++|+..|.|.-+.+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 68999999999997666543
No 248
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.64 E-value=99 Score=30.74 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=25.9
Q ss_pred cccccccCCCCCc------------CHHHHHHHhcccCCeeEEEEe
Q 043470 190 YTNLFMKNLDSDV------------TEEHLVEKFSKFGKIASLLIA 223 (629)
Q Consensus 190 ~~~v~V~nLp~~~------------t~e~L~~~F~~~G~v~~~~v~ 223 (629)
..+|++.+||-.| +++.|+..|+.||+|..+.+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3567777766543 467899999999999988774
No 249
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=31.75 E-value=60 Score=27.87 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHhc---CCCeEEEEEeeC--CCCCeeeEEEEEeCCH
Q 043470 301 IDDDVTDEELKAHFSQ---CGTITSAKVMRD--EKGINKGFGFVCFSSP 344 (629)
Q Consensus 301 l~~~~t~~~l~~~F~~---~G~v~~~~v~~~--~~g~~kg~~fV~f~~~ 344 (629)
-|..+|..+|+++|++ |-.|+.-.|.+| +.|. -..||..|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~Gs-YRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGS-YRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCc-eEEEEEEeccc
Confidence 3567899999999976 666666666655 2332 23567766543
No 250
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=31.51 E-value=25 Score=36.92 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=49.9
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHHhc--CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 043470 12 ASLYVGDLHPDVTD--------GELFDAFSE--FKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71 (629)
Q Consensus 12 ~sLyV~nLp~~~te--------~~L~~~Fs~--~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~ 71 (629)
|.+|+.+.....+. +++...|.. ++++..|+..||.....+.|.-|++|.....|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 46666666654444 489999999 6799999999998788899999999999999999995
No 251
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=31.24 E-value=1.5e+02 Score=24.20 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=42.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHh
Q 043470 14 LYVGDLHPDVTDGELFDAFSE-FK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72 (629)
Q Consensus 14 LyV~nLp~~~te~~L~~~Fs~-~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ 72 (629)
-|+=..+.+++..+|.+.++. || .|.+|+.+.-.. ..-=|||.+....+|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 455567889999999988877 46 788888886542 334699999999998876543
No 252
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=29.50 E-value=53 Score=32.57 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=27.4
Q ss_pred ccceeeeecCCC------------CCCHHHHHHHHhcCCCeEEEEEee
Q 043470 292 KGSNVYVKNIDD------------DVTDEELKAHFSQCGTITSAKVMR 327 (629)
Q Consensus 292 ~~~~l~V~nl~~------------~~t~~~l~~~F~~~G~v~~~~v~~ 327 (629)
...+||+.+||- --+++.|+..|+.||.|..|.|..
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 345677777763 246788999999999999888854
No 253
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=27.58 E-value=42 Score=31.28 Aligned_cols=71 Identities=14% Similarity=0.025 Sum_probs=46.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTT-GRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t-~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
|++|.. +.+..-++|.++-+ |.+..|..-+.... ..-+|--||+|.+.+.|..++++ ......-..+..+|
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 455554 33344455555555 78888877654322 24578999999999999999976 44444445555555
No 254
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=25.67 E-value=3.7e+02 Score=27.53 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=6.1
Q ss_pred CCeeEEEEeecC
Q 043470 36 KSLASVRVCKDS 47 (629)
Q Consensus 36 G~V~si~v~rd~ 47 (629)
|.+-.|++.||.
T Consensus 15 Gslg~i~~rr~~ 26 (389)
T KOG2932|consen 15 GSLGQIRLRRDS 26 (389)
T ss_pred CcccceeecccC
Confidence 444555555543
No 255
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=25.58 E-value=51 Score=22.11 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHHhcCCC
Q 043470 21 PDVTDGELFDAFSEFKS 37 (629)
Q Consensus 21 ~~~te~~L~~~Fs~~G~ 37 (629)
.++++++|++.|++++.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 37899999999998753
No 256
>PF14893 PNMA: PNMA
Probab=25.56 E-value=39 Score=35.22 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=42.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC-CCeeEEEEe-----ecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc------e
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEF-KSLASVRVC-----KDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT------Q 77 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~-G~V~si~v~-----rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~------~ 77 (629)
..++|.|.+||.+++|++|.+.+... -++-..+|. ++.. .--|+|+|.. .+|+. .
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~----~~aalve~~e---------~~n~~~iP~~i~ 83 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN----AKAALVEFAE---------DVNYSLIPREIP 83 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc----cceeeeeccc---------ccchhhCchhcC
Confidence 45799999999999999999887652 233334443 2222 2257777653 23333 2
Q ss_pred ecCeeeeeeccCCC
Q 043470 78 LHGKMLRISWSCRD 91 (629)
Q Consensus 78 i~g~~i~I~~s~~~ 91 (629)
-+|.+++|.|-.+.
T Consensus 84 g~gg~W~Vv~~p~~ 97 (331)
T PF14893_consen 84 GKGGPWRVVFKPPA 97 (331)
T ss_pred CCCCceEEEecCCC
Confidence 24667777665443
No 257
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.36 E-value=17 Score=38.49 Aligned_cols=79 Identities=5% Similarity=-0.055 Sum_probs=63.6
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
+..|+..++...+++++.-.|..||.|..+..-+.. .|..+-.+||+-.+ ++|..+|..+.-..++|..++|+++..-
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 346788999999999999999999999887775554 34466678888877 7788888888888888999999988644
Q ss_pred H
Q 043470 373 E 373 (629)
Q Consensus 373 ~ 373 (629)
.
T Consensus 83 ~ 83 (572)
T KOG4365|consen 83 S 83 (572)
T ss_pred h
Confidence 3
No 258
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=25.09 E-value=4.6e+02 Score=23.20 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=50.2
Q ss_pred CCCCeEEEcCCCCC---CCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 9 TTPASLYVGDLHPD---VTDGELFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 9 ~~~~sLyV~nLp~~---~te~~L~~~Fs~~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
.+..+|.|+..+.. .+-..+++.++.-| .+.+|..-.| ...|.|.+.++-.+|.+.|....-.+-.+-
T Consensus 33 gedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VA 104 (127)
T PRK10629 33 QQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIA 104 (127)
T ss_pred CCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEE
Confidence 45567888877554 56678899999998 6777766544 478999999998888887776544443444
Q ss_pred ee
Q 043470 85 IS 86 (629)
Q Consensus 85 I~ 86 (629)
+.
T Consensus 105 ln 106 (127)
T PRK10629 105 QQ 106 (127)
T ss_pred Ee
Confidence 43
No 259
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=24.39 E-value=30 Score=28.18 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=21.0
Q ss_pred HHHHhhhhhhhhhc-----------CCCCccchhhhhcc
Q 043470 550 QILGERLYPLVEKH-----------KPDLVAKITGMLLE 577 (629)
Q Consensus 550 ~~~ge~l~~~~~~~-----------~~~~~~kitgm~l~ 577 (629)
-++||+++|++.++ +.+.+.+|+|.|=-
T Consensus 38 i~~Ge~~~p~~~~~~~~~~~~~a~~~~~c~~hv~G~lp~ 76 (90)
T PF07235_consen 38 ILLGEQAIPLVRRLLRGHPLTAAWFHAECVPHVFGQLPG 76 (90)
T ss_pred HhcccchhHHHHHHhcCCchhhhhhhccccccccCCCCC
Confidence 46899999999876 34567888887643
No 260
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=22.58 E-value=2e+02 Score=31.99 Aligned_cols=62 Identities=23% Similarity=0.143 Sum_probs=43.2
Q ss_pred HHHHHHHh----cCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 308 EELKAHFS----QCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 308 ~~l~~~F~----~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
-+|..+|. .+|.|+++.+-..+.-..+...++.|.+.++|..|+..+....+ .+..+++-..
T Consensus 204 ~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~--~p~~~el~d~ 269 (499)
T PRK11230 204 FDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAGI--IPGGLEMMDN 269 (499)
T ss_pred cchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhcCC--CcEEEEeeCH
Confidence 45666664 68999999887766555667888999999999999987643221 2444455443
No 261
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.39 E-value=1.4e+03 Score=27.30 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 043470 387 MAGIEGSSANVIPSGYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLPVNPKHNRQNRGRM 466 (629)
Q Consensus 387 ~~~~~~~~~~~~~~g~p~~~~~~ppg~~~~~pp~~~~~~~~~~~~~~~~p~~~~p~~~p~~~~~p~p~~~~~~~~~~~~~ 466 (629)
.......+.+..++-.+...+++|||.+ |+++..+..+.+.++..+|+++|+...++....- |..++.-.+...-.
T Consensus 28 a~~~~~~~~~p~p~~~~~~p~~~ppg~~---p~~~q~~~~~~~~p~~~~pg~~p~~sq~~~~a~~-p~~q~~~p~~~s~~ 103 (1007)
T KOG1984|consen 28 AQAMPNGSINPPPPMQGTGPRGPPPGAP---PQQPQSGQSPMARPPQRRPGPPPGVSQPNGFAAS-PSSQPSYPGRPSTP 103 (1007)
T ss_pred hhhccCCccCCCCCCCCCCCCCCCCCCC---CCCCCCCCCccCCCcccCCCCCCCCCcccccCCC-ccccCCCCCCCCCC
Q ss_pred CCCCCCcCccccccccc-cccccCCCCCCCCCCCCCcccCCCCcccCCCCCCCCCCccCCCCCCCCCC
Q 043470 467 NGNMLPQVGAHYMQQSS-QSAASSKDSSNQQKGGQSKYVPNGRIRELNKGSGVSLGTFNSGGVMARKP 533 (629)
Q Consensus 467 ~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (629)
++....-. +.. +....++..+.++......+ +.+..+.....+.+|++. .....++
T Consensus 104 g~p~~~gs------~~s~~~~~p~~~~~~gpp~g~~q~-~~~pls~~~~~~~~pq~s----~f~p~~~ 160 (1007)
T KOG1984|consen 104 GGPQAGGS------QSSFAAAGPSSGSGTGPPSGNSQG-PAGPLSQGPPTGGFPQPS----AFPPGPQ 160 (1007)
T ss_pred CCcccCCC------cccccccCCCCCCcCCCCCCccCC-CCCccccCCCCCCCCCCc----cCCCCcc
No 262
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=22.06 E-value=1.4e+02 Score=24.17 Aligned_cols=35 Identities=23% Similarity=0.166 Sum_probs=24.5
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Q 043470 37 SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT 76 (629)
Q Consensus 37 ~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~ 76 (629)
.|.||-+..+ .+||-||+=.+..+...|++.+.+.
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 5777755433 5789999999999999999876553
No 263
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=21.71 E-value=74 Score=38.10 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=7.6
Q ss_pred CChHHHHHhcCChHHH
Q 043470 578 MDNSELLLLLESPESL 593 (629)
Q Consensus 578 ~~~~~~~~~~~~~~~l 593 (629)
||.+-|..++-+...|
T Consensus 221 ~dde~v~dw~y~sr~l 236 (2365)
T COG5178 221 MDDEHVRDWVYTSRDL 236 (2365)
T ss_pred CCcHHHHHHHhhcccc
Confidence 4555555444444444
No 264
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.25 E-value=3.1e+02 Score=21.94 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=41.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 043470 13 SLYVGDLHPDVTDGELFDAFSE-FK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIE 71 (629)
Q Consensus 13 sLyV~nLp~~~te~~L~~~Fs~-~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~ 71 (629)
.-|+-..+.++|..+|.+.++. || .|.+|+...-.. ..-=|||.+....+|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 3566677899999999988877 46 788888876432 33469999998888876543
No 265
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.10 E-value=1.6e+02 Score=30.99 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=43.2
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCe-EEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTI-TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v-~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~ 353 (629)
..|-|-++|+..--+||...|+.|+.- -+|+-+.| -.+|-.|.+...|..|+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 457888999999999999999999632 44554544 2699999999999999973
No 266
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=20.78 E-value=72 Score=33.49 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=34.0
Q ss_pred hcccceeeeecCCCC-CCHHHHHHHHhcC----CCeEEEEEeeCCCC
Q 043470 290 KYKGSNVYVKNIDDD-VTDEELKAHFSQC----GTITSAKVMRDEKG 331 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~-~t~~~l~~~F~~~----G~v~~~~v~~~~~g 331 (629)
...+.+|-|-|++|. +..++|..+|+.| |.+..|.|...+-|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefG 189 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFG 189 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhh
Confidence 445678999999997 8889999999887 68888998776533
No 267
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=20.60 E-value=3.2e+02 Score=21.01 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCC---HHHHHHHHHhcCC
Q 043470 25 DGELFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVNFLS---PHDAIRAIEVKNH 75 (629)
Q Consensus 25 e~~L~~~Fs~~G-~V~si~v~rd~~t~~s~G~AfV~F~~---~~~A~~Al~~ln~ 75 (629)
-.++.+.|+.+| .|.+|.- |........-.-||.+.. ....+.+++.|..
T Consensus 13 L~~vL~~f~~~~vni~~I~S-rp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 13 LAKALKVFAERGINLTKIES-RPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHCCCCEEEEEe-eecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 578889999998 7777733 333333344566788874 5666777776543
No 268
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=20.24 E-value=1.6e+02 Score=29.48 Aligned_cols=50 Identities=8% Similarity=0.136 Sum_probs=37.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHH
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHD 65 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~ 65 (629)
..-|||+||+.++--.||...+.+-|- +-.++.+. ...|-||+-|-+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswk----g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWK----GHFGKCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCC-CceeEeee----cCCcceeEecCCccC
Confidence 357999999999999999999988873 33444433 245679999987654
Done!