Query 043470
Match_columns 629
No_of_seqs 429 out of 2990
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 08:53:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.5E-43 8.6E-48 360.6 30.9 257 9-386 20-278 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.5E-42 5.2E-47 356.2 26.6 252 6-372 36-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 5.7E-33 1.9E-37 271.4 16.2 173 7-180 11-183 (213)
4 4f02_A Polyadenylate-binding p 100.0 2.2E-31 7.4E-36 260.1 22.5 175 188-379 13-188 (213)
5 1g9l_A Polyadenylate-binding p 100.0 5.7E-33 2E-37 241.4 8.5 92 535-626 53-144 (144)
6 1ifw_A Polyadenylate-binding p 100.0 9.8E-33 3.4E-37 221.1 6.8 79 532-610 4-84 (92)
7 2dyd_A Poly(A)-binding protein 100.0 3.9E-33 1.3E-37 220.0 2.1 77 534-610 8-84 (85)
8 3kuj_A Polyadenylate-binding p 100.0 2.5E-32 8.5E-37 217.7 5.7 80 534-613 6-85 (88)
9 1nmr_A Poly(A)-binding protein 100.0 7.1E-33 2.4E-37 218.5 1.1 75 534-608 9-83 (85)
10 3md3_A Nuclear and cytoplasmic 100.0 2.4E-30 8.3E-35 241.7 18.4 164 12-176 1-165 (166)
11 1l3k_A Heterogeneous nuclear r 100.0 4.6E-30 1.6E-34 247.0 18.8 176 4-181 6-186 (196)
12 3md3_A Nuclear and cytoplasmic 100.0 8.1E-30 2.8E-34 238.1 19.3 165 191-371 1-166 (166)
13 1b7f_A Protein (SXL-lethal pro 100.0 8.6E-30 2.9E-34 238.7 19.3 163 10-174 2-167 (168)
14 1fxl_A Paraneoplastic encephal 100.0 1.2E-29 4.3E-34 237.1 20.3 162 10-173 1-165 (167)
15 1l3k_A Heterogeneous nuclear r 100.0 4.9E-29 1.7E-33 239.8 22.0 178 186-377 9-188 (196)
16 2qfj_A FBP-interacting repress 100.0 3.7E-29 1.3E-33 244.5 19.9 177 189-372 27-205 (216)
17 2qfj_A FBP-interacting repress 100.0 3E-29 1E-33 245.1 18.6 171 10-180 27-207 (216)
18 1fxl_A Paraneoplastic encephal 100.0 8.9E-29 3E-33 231.3 20.1 162 190-369 2-167 (167)
19 1b7f_A Protein (SXL-lethal pro 100.0 4.5E-29 1.5E-33 233.8 18.0 163 189-369 2-168 (168)
20 3nmr_A Cugbp ELAV-like family 100.0 5.1E-29 1.7E-33 234.9 18.4 165 10-175 2-174 (175)
21 2cjk_A Nuclear polyadenylated 100.0 1.5E-29 5E-34 236.9 12.2 165 9-178 1-166 (167)
22 3nmr_A Cugbp ELAV-like family 100.0 1E-28 3.5E-33 232.8 17.7 165 189-370 2-175 (175)
23 2cjk_A Nuclear polyadenylated 100.0 9.4E-29 3.2E-33 231.4 15.6 163 189-372 2-166 (167)
24 1fje_B Nucleolin RBD12, protei 100.0 7.9E-29 2.7E-33 234.0 9.5 167 6-178 8-174 (175)
25 1i2t_A HYD protein; four alpha 100.0 2.2E-29 7.4E-34 186.6 4.2 61 548-608 1-61 (61)
26 2yh0_A Splicing factor U2AF 65 100.0 1.5E-28 5.2E-33 236.7 10.4 164 9-179 2-195 (198)
27 3tyt_A Heterogeneous nuclear r 100.0 1E-27 3.6E-32 231.9 16.2 155 9-169 2-194 (205)
28 3smz_A Protein raver-1, ribonu 100.0 2.3E-27 7.9E-32 242.1 19.3 172 9-180 93-266 (284)
29 2g4b_A Splicing factor U2AF 65 99.9 2.1E-27 7.2E-32 223.3 16.5 158 9-175 2-171 (172)
30 2g4b_A Splicing factor U2AF 65 99.9 2.5E-27 8.4E-32 222.9 16.2 158 189-370 3-172 (172)
31 1fje_B Nucleolin RBD12, protei 99.9 5.1E-28 1.8E-32 228.4 11.2 165 187-372 10-174 (175)
32 3pgw_A U1-A; protein-RNA compl 99.9 6.6E-27 2.3E-31 238.4 19.4 178 188-371 7-282 (282)
33 3tyt_A Heterogeneous nuclear r 99.9 9.7E-28 3.3E-32 232.2 12.3 176 189-369 3-204 (205)
34 3pgw_A U1-A; protein-RNA compl 99.9 7.7E-27 2.6E-31 238.0 19.1 163 6-175 4-280 (282)
35 2adc_A Polypyrimidine tract-bi 99.9 6.8E-27 2.3E-31 230.8 17.4 167 2-177 25-227 (229)
36 2yh0_A Splicing factor U2AF 65 99.9 4.7E-26 1.6E-30 219.2 18.4 179 189-373 3-195 (198)
37 3sde_A Paraspeckle component 1 99.9 6.5E-26 2.2E-30 228.3 20.0 157 187-372 19-179 (261)
38 3sde_A Paraspeckle component 1 99.9 3.7E-26 1.3E-30 230.1 16.8 159 8-180 19-181 (261)
39 2ghp_A U4/U6 snRNA-associated 99.9 2.4E-26 8.3E-31 235.5 15.6 167 10-178 116-291 (292)
40 1qm9_A Polypyrimidine tract-bi 99.9 3.6E-26 1.2E-30 220.3 14.4 159 10-177 2-196 (198)
41 2adc_A Polypyrimidine tract-bi 99.9 1.5E-26 5.2E-31 228.3 10.0 177 188-372 32-228 (229)
42 1qm9_A Polypyrimidine tract-bi 99.9 1.1E-25 3.8E-30 216.9 10.4 175 190-372 3-197 (198)
43 4f25_A Polyadenylate-binding p 99.8 1.8E-20 6.1E-25 163.8 10.8 104 10-115 4-113 (115)
44 2kn4_A Immunoglobulin G-bindin 99.8 1.2E-20 4E-25 174.9 8.4 148 219-372 2-150 (158)
45 4fxv_A ELAV-like protein 1; RN 99.8 1.1E-19 3.8E-24 154.1 12.1 83 289-371 15-98 (99)
46 4fxv_A ELAV-like protein 1; RN 99.8 2.3E-19 7.8E-24 152.2 11.7 81 9-89 17-97 (99)
47 3s8s_A Histone-lysine N-methyl 99.8 1.5E-18 5.3E-23 149.9 14.4 89 291-379 4-93 (110)
48 2kn4_A Immunoglobulin G-bindin 99.8 8.5E-19 2.9E-23 162.3 12.3 139 40-180 2-152 (158)
49 2i2y_A Fusion protein consists 99.8 3.1E-19 1.1E-23 163.8 8.0 138 228-372 10-148 (150)
50 3s8s_A Histone-lysine N-methyl 99.8 2.2E-18 7.6E-23 148.9 12.1 84 8-91 3-86 (110)
51 2lxi_A RNA-binding protein 10; 99.8 7.1E-19 2.4E-23 146.7 7.3 83 11-93 1-85 (91)
52 4f25_A Polyadenylate-binding p 99.8 8.2E-19 2.8E-23 153.2 7.5 108 98-206 4-113 (115)
53 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.8E-18 1.6E-22 140.4 10.6 83 9-91 4-86 (87)
54 2dnz_A Probable RNA-binding pr 99.7 1.1E-17 3.8E-22 140.7 12.3 87 8-94 2-88 (95)
55 1x5u_A Splicing factor 3B subu 99.7 1.1E-17 3.6E-22 143.6 12.4 91 4-94 8-98 (105)
56 2la6_A RNA-binding protein FUS 99.7 1.1E-17 3.8E-22 141.9 11.9 86 4-89 6-99 (99)
57 2lkz_A RNA-binding protein 5; 99.7 2.5E-18 8.5E-23 144.2 7.6 83 7-89 5-93 (95)
58 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7.7E-18 2.6E-22 138.5 10.4 83 7-89 3-85 (85)
59 3q2s_C Cleavage and polyadenyl 99.7 2.8E-18 9.6E-23 168.4 8.7 85 292-376 67-154 (229)
60 1whw_A Hypothetical protein ri 99.7 1.5E-17 5.1E-22 141.0 11.7 88 7-94 4-91 (99)
61 2dgs_A DAZ-associated protein 99.7 2E-17 6.9E-22 140.2 12.5 89 5-94 4-92 (99)
62 3md1_A Nuclear and cytoplasmic 99.7 1.6E-17 5.5E-22 135.9 11.5 81 11-91 1-81 (83)
63 2dgo_A Cytotoxic granule-assoc 99.7 2.7E-17 9.2E-22 143.6 13.6 92 5-96 9-100 (115)
64 2jrs_A RNA-binding protein 39; 99.7 1.6E-17 5.3E-22 143.3 11.9 87 5-91 20-106 (108)
65 3md1_A Nuclear and cytoplasmic 99.7 1.8E-17 6.3E-22 135.5 11.7 81 293-373 1-82 (83)
66 2cq0_A Eukaryotic translation 99.7 1.7E-17 5.8E-22 141.8 11.9 88 6-93 10-97 (103)
67 3lqv_A PRE-mRNA branch site pr 99.7 8.1E-18 2.8E-22 146.9 10.1 106 7-125 4-109 (115)
68 2cpz_A CUG triplet repeat RNA- 99.7 2.1E-17 7.2E-22 144.2 12.7 87 7-93 21-107 (115)
69 2dnm_A SRP46 splicing factor; 99.7 1E-17 3.4E-22 143.2 10.3 89 4-92 6-94 (103)
70 1x5s_A Cold-inducible RNA-bind 99.7 1.4E-17 4.8E-22 142.0 10.9 91 5-95 6-96 (102)
71 2cqc_A Arginine/serine-rich sp 99.7 2.2E-17 7.6E-22 138.8 11.9 85 5-89 9-93 (95)
72 2e5h_A Zinc finger CCHC-type a 99.7 1.8E-17 6.1E-22 139.1 11.3 84 6-89 11-94 (94)
73 1x5t_A Splicing factor 3B subu 99.7 1.5E-17 5.1E-22 140.2 10.7 85 9-93 3-88 (96)
74 2x1f_A MRNA 3'-END-processing 99.7 1.8E-17 6.1E-22 139.7 11.0 83 10-92 1-83 (96)
75 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.7E-17 9.2E-22 135.8 11.7 81 292-372 5-86 (87)
76 2lxi_A RNA-binding protein 10; 99.7 2.8E-18 9.7E-23 143.1 5.8 81 293-373 1-84 (91)
77 2i2y_A Fusion protein consists 99.7 8.4E-18 2.9E-22 154.2 9.5 124 50-178 10-148 (150)
78 1x4h_A RNA-binding protein 28; 99.7 3.7E-17 1.3E-21 141.7 12.7 90 4-93 8-103 (111)
79 2cph_A RNA binding motif prote 99.7 3E-17 1E-21 141.2 12.1 91 4-94 8-100 (107)
80 2cpf_A RNA binding motif prote 99.7 3.1E-17 1.1E-21 138.7 11.7 85 9-93 3-90 (98)
81 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.4E-17 8.1E-22 140.6 10.8 88 6-93 7-94 (102)
82 2div_A TRNA selenocysteine ass 99.7 3.7E-17 1.3E-21 138.6 11.9 85 7-91 5-94 (99)
83 2do4_A Squamous cell carcinoma 99.7 4.9E-17 1.7E-21 138.1 12.6 86 6-92 12-97 (100)
84 1p27_B RNA-binding protein 8A; 99.7 2.2E-17 7.6E-22 141.8 10.6 85 7-91 19-103 (106)
85 3p5t_L Cleavage and polyadenyl 99.7 8.4E-18 2.9E-22 139.9 7.7 81 12-92 2-84 (90)
86 2lkz_A RNA-binding protein 5; 99.7 6.2E-18 2.1E-22 141.7 6.8 79 293-371 9-94 (95)
87 2do4_A Squamous cell carcinoma 99.7 4E-17 1.4E-21 138.7 11.7 83 291-373 15-97 (100)
88 2dnh_A Bruno-like 5, RNA bindi 99.7 6.3E-17 2.1E-21 138.7 13.0 86 7-93 11-99 (105)
89 1sjq_A Polypyrimidine tract-bi 99.7 3E-17 1E-21 139.1 10.6 83 7-95 12-96 (105)
90 2dng_A Eukaryotic translation 99.7 6.3E-17 2.1E-21 138.2 12.7 88 4-93 8-95 (103)
91 2dhg_A TRNA selenocysteine ass 99.7 5.4E-17 1.8E-21 138.9 12.2 88 5-93 3-92 (104)
92 2dgp_A Bruno-like 4, RNA bindi 99.7 2.9E-17 1E-21 141.1 10.6 90 4-93 6-98 (106)
93 2wbr_A GW182, gawky, LD47780P; 99.7 2.2E-17 7.4E-22 133.4 8.8 75 292-371 6-80 (89)
94 3ns6_A Eukaryotic translation 99.7 1.1E-17 3.8E-22 142.1 7.5 83 292-374 5-95 (100)
95 3n9u_C Cleavage and polyadenyl 99.7 7.5E-17 2.6E-21 148.4 13.6 87 292-378 54-143 (156)
96 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.8E-17 9.6E-22 153.1 10.8 139 236-376 11-156 (165)
97 2cqi_A Nucleolysin TIAR; RNA r 99.7 7.7E-17 2.6E-21 137.7 12.6 89 4-94 8-96 (103)
98 2ywk_A Putative RNA-binding pr 99.7 5.2E-17 1.8E-21 136.5 11.3 81 291-371 14-94 (95)
99 2dgv_A HnRNP M, heterogeneous 99.7 6.8E-17 2.3E-21 134.9 11.9 86 5-92 2-87 (92)
100 2cqd_A RNA-binding region cont 99.7 7.2E-17 2.5E-21 141.1 12.3 88 5-93 11-98 (116)
101 2kxn_B Transformer-2 protein h 99.7 3.5E-17 1.2E-21 145.7 10.4 87 5-91 40-126 (129)
102 2fy1_A RNA-binding motif prote 99.7 7.5E-17 2.6E-21 140.9 12.3 85 7-92 3-87 (116)
103 3s7r_A Heterogeneous nuclear r 99.7 6.6E-17 2.3E-21 133.5 11.3 83 5-88 5-87 (87)
104 2ywk_A Putative RNA-binding pr 99.7 4.4E-17 1.5E-21 137.0 10.4 84 5-89 10-93 (95)
105 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.3E-17 1.5E-21 133.9 10.0 80 291-370 5-85 (85)
106 3p5t_L Cleavage and polyadenyl 99.7 1.4E-17 4.8E-22 138.6 7.1 81 294-374 2-85 (90)
107 1whw_A Hypothetical protein ri 99.7 2.9E-17 9.9E-22 139.2 9.2 84 291-374 6-90 (99)
108 2d9p_A Polyadenylate-binding p 99.7 1.9E-17 6.4E-22 141.5 8.1 85 289-374 11-95 (103)
109 2dnh_A Bruno-like 5, RNA bindi 99.7 3.5E-17 1.2E-21 140.4 9.6 84 291-374 13-99 (105)
110 1oo0_B CG8781-PA, drosophila Y 99.7 3.9E-17 1.3E-21 141.3 10.0 87 6-92 21-107 (110)
111 2cpe_A RNA-binding protein EWS 99.7 8.4E-17 2.9E-21 139.9 12.0 88 6-93 10-105 (113)
112 3ulh_A THO complex subunit 4; 99.7 7E-17 2.4E-21 139.0 11.4 84 5-89 23-106 (107)
113 2dh8_A DAZ-associated protein 99.7 8.5E-17 2.9E-21 137.9 11.9 88 5-93 10-97 (105)
114 2d9p_A Polyadenylate-binding p 99.7 1E-16 3.4E-21 137.0 12.2 85 7-93 11-95 (103)
115 1wi8_A EIF-4B, eukaryotic tran 99.7 7.5E-17 2.6E-21 138.0 11.3 89 5-95 9-98 (104)
116 2khc_A Testis-specific RNP-typ 99.7 3.8E-17 1.3E-21 143.3 9.7 83 7-89 36-118 (118)
117 2x1f_A MRNA 3'-END-processing 99.7 5.6E-17 1.9E-21 136.7 10.3 83 293-375 2-85 (96)
118 1sjq_A Polypyrimidine tract-bi 99.7 2E-17 6.7E-22 140.2 7.4 80 290-374 13-94 (105)
119 1p1t_A Cleavage stimulation fa 99.7 2.5E-17 8.7E-22 140.9 8.3 88 5-92 2-89 (104)
120 1u6f_A Tcubp1, RNA-binding pro 99.7 1E-16 3.5E-21 144.9 12.6 87 7-93 38-124 (139)
121 1x4e_A RNA binding motif, sing 99.7 2.1E-17 7E-22 136.0 7.3 82 8-89 2-83 (85)
122 2cpz_A CUG triplet repeat RNA- 99.7 6.9E-17 2.3E-21 141.0 10.8 84 291-374 23-107 (115)
123 1s79_A Lupus LA protein; RRM, 99.7 3.7E-17 1.3E-21 139.4 8.8 82 292-374 10-91 (103)
124 2cq3_A RNA-binding protein 9; 99.7 2.1E-16 7.1E-21 135.0 13.4 88 4-93 8-95 (103)
125 2hvz_A Splicing factor, argini 99.7 3.6E-17 1.2E-21 139.2 8.6 92 12-108 1-100 (101)
126 2rs2_A Musashi-1, RNA-binding 99.7 7.5E-17 2.6E-21 139.2 10.7 85 7-92 21-105 (109)
127 3ns6_A Eukaryotic translation 99.7 2.1E-17 7.3E-22 140.3 7.1 81 9-89 4-91 (100)
128 3r27_A HnRNP L, heterogeneous 99.7 4E-17 1.4E-21 136.9 8.6 80 289-373 17-98 (100)
129 3ulh_A THO complex subunit 4; 99.7 1.2E-16 4.2E-21 137.4 11.9 81 290-370 26-106 (107)
130 2cq0_A Eukaryotic translation 99.7 9E-17 3.1E-21 137.3 10.7 84 290-373 12-96 (103)
131 2dgo_A Cytotoxic granule-assoc 99.7 1.4E-16 4.7E-21 139.0 12.0 84 290-373 12-96 (115)
132 2cqc_A Arginine/serine-rich sp 99.7 1.6E-16 5.5E-21 133.4 11.9 82 290-371 12-94 (95)
133 2fy1_A RNA-binding motif prote 99.7 5.8E-17 2E-21 141.6 9.4 82 291-372 5-86 (116)
134 2do0_A HnRNP M, heterogeneous 99.7 1.4E-16 4.9E-21 138.6 11.9 82 291-372 13-94 (114)
135 2dnz_A Probable RNA-binding pr 99.7 8.1E-17 2.8E-21 135.3 9.9 82 292-373 4-86 (95)
136 1s79_A Lupus LA protein; RRM, 99.7 5.3E-17 1.8E-21 138.4 8.8 81 8-90 8-88 (103)
137 3ucg_A Polyadenylate-binding p 99.7 1.1E-16 3.6E-21 132.8 10.5 81 10-91 5-85 (89)
138 2do0_A HnRNP M, heterogeneous 99.7 2.7E-16 9.2E-21 136.9 13.5 86 5-91 9-94 (114)
139 2cqg_A TDP-43, TAR DNA-binding 99.7 3.3E-16 1.1E-20 133.8 13.7 88 5-94 9-96 (103)
140 2cpf_A RNA binding motif prote 99.7 1.1E-16 3.6E-21 135.5 10.5 82 292-373 4-89 (98)
141 2la6_A RNA-binding protein FUS 99.7 1.1E-16 3.7E-21 135.7 10.5 81 290-370 10-99 (99)
142 1x5t_A Splicing factor 3B subu 99.7 4.8E-17 1.6E-21 137.0 8.3 83 292-374 4-88 (96)
143 2lea_A Serine/arginine-rich sp 99.7 1.2E-17 4.2E-22 150.0 4.6 121 233-372 6-127 (135)
144 3n9u_C Cleavage and polyadenyl 99.7 1.2E-16 4.1E-21 146.9 11.3 81 10-90 54-136 (156)
145 2mss_A Protein (musashi1); RNA 99.7 5E-17 1.7E-21 130.2 7.7 75 13-88 1-75 (75)
146 2dgx_A KIAA0430 protein; RRM d 99.7 9.3E-17 3.2E-21 135.3 9.6 80 291-372 7-90 (96)
147 1p27_B RNA-binding protein 8A; 99.7 1.3E-16 4.3E-21 137.1 10.7 83 291-373 21-104 (106)
148 2dgw_A Probable RNA-binding pr 99.7 2.6E-16 8.8E-21 131.1 12.1 85 5-92 4-88 (91)
149 2cqp_A RNA-binding protein 12; 99.7 9.6E-17 3.3E-21 135.7 9.6 85 7-91 11-95 (98)
150 2cq3_A RNA-binding protein 9; 99.7 1.7E-16 5.8E-21 135.5 11.2 83 290-373 12-94 (103)
151 2wbr_A GW182, gawky, LD47780P; 99.7 1.1E-16 3.7E-21 129.4 9.2 75 9-89 5-79 (89)
152 2e5h_A Zinc finger CCHC-type a 99.7 1.2E-16 4E-21 134.1 9.9 80 291-370 14-94 (94)
153 2db1_A Heterogeneous nuclear r 99.7 1.1E-16 3.8E-21 140.3 10.0 84 291-375 15-101 (118)
154 1p1t_A Cleavage stimulation fa 99.7 1.3E-16 4.5E-21 136.5 10.3 85 293-377 8-93 (104)
155 4a8x_A RNA-binding protein wit 99.7 1.1E-16 3.9E-21 132.3 9.6 83 9-91 2-85 (88)
156 3ex7_B RNA-binding protein 8A; 99.7 1.1E-16 3.7E-21 142.1 10.1 88 5-92 16-103 (126)
157 2dhg_A TRNA selenocysteine ass 99.7 8.2E-17 2.8E-21 137.7 8.8 84 291-374 7-92 (104)
158 1oo0_B CG8781-PA, drosophila Y 99.7 9.2E-17 3.1E-21 139.0 9.0 85 290-374 23-108 (110)
159 1x5u_A Splicing factor 3B subu 99.7 8.8E-17 3E-21 137.8 8.8 85 290-374 12-97 (105)
160 2hgl_A HNRPF protein, heteroge 99.7 8E-17 2.7E-21 144.2 8.8 84 291-375 42-128 (136)
161 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.4E-17 1.8E-21 137.9 7.2 83 7-91 15-98 (100)
162 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.9E-17 1.7E-21 130.9 6.6 76 12-88 1-76 (77)
163 2dgs_A DAZ-associated protein 99.7 1.4E-16 4.7E-21 135.1 9.6 83 291-374 8-91 (99)
164 2dgv_A HnRNP M, heterogeneous 99.7 1.5E-16 5.1E-21 132.9 9.7 82 291-373 6-87 (92)
165 2jrs_A RNA-binding protein 39; 99.7 1.2E-16 4E-21 137.8 9.3 83 291-373 24-107 (108)
166 3r27_A HnRNP L, heterogeneous 99.7 1.5E-16 5E-21 133.5 9.6 80 6-91 16-97 (100)
167 3ucg_A Polyadenylate-binding p 99.7 1.9E-16 6.5E-21 131.3 10.3 79 293-372 6-85 (89)
168 2cqb_A Peptidyl-prolyl CIS-tra 99.7 9.4E-17 3.2E-21 136.9 8.5 84 291-374 10-94 (102)
169 2cpy_A RNA-binding protein 12; 99.7 7.8E-17 2.7E-21 140.4 8.2 86 291-377 13-99 (114)
170 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.1E-16 7.1E-21 135.0 10.7 83 291-374 13-95 (103)
171 2m2b_A RNA-binding protein 10; 99.7 7.3E-17 2.5E-21 144.2 8.1 84 7-91 19-108 (131)
172 2kt5_A RNA and export factor-b 99.7 2.4E-16 8.2E-21 139.5 11.1 85 7-92 31-115 (124)
173 2dgw_A Probable RNA-binding pr 99.7 2.8E-16 9.7E-21 130.9 10.9 80 291-372 8-87 (91)
174 2ek1_A RNA-binding protein 12; 99.7 8.8E-17 3E-21 135.1 7.9 82 8-89 12-93 (95)
175 1x4a_A Splicing factor, argini 99.7 4.9E-16 1.7E-20 134.1 12.7 85 6-93 17-101 (109)
176 2cph_A RNA binding motif prote 99.7 1.5E-16 5.1E-21 136.9 9.3 85 290-374 12-99 (107)
177 2lea_A Serine/arginine-rich sp 99.7 7.7E-17 2.6E-21 144.7 7.7 89 4-92 40-128 (135)
178 4a8x_A RNA-binding protein wit 99.7 1.1E-16 3.6E-21 132.5 7.6 81 292-372 3-85 (88)
179 2dnn_A RNA-binding protein 12; 99.7 2.6E-16 8.9E-21 135.3 10.1 79 293-373 16-94 (109)
180 2div_A TRNA selenocysteine ass 99.7 2.1E-16 7.1E-21 133.9 9.4 82 291-372 7-94 (99)
181 2a3j_A U1 small nuclear ribonu 99.7 1.8E-16 6.3E-21 140.1 9.3 85 5-92 23-111 (127)
182 2err_A Ataxin-2-binding protei 99.7 1.4E-16 4.7E-21 137.6 8.4 82 290-372 26-107 (109)
183 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.2E-16 1.8E-20 143.1 12.7 86 7-92 35-120 (156)
184 1wex_A Hypothetical protein (r 99.7 4.2E-16 1.4E-20 132.9 11.1 85 3-93 7-93 (104)
185 2kt5_A RNA and export factor-b 99.7 2.4E-16 8.2E-21 139.5 10.0 82 291-372 33-114 (124)
186 1wez_A HnRNP H', FTP-3, hetero 99.7 2.9E-16 9.8E-21 133.7 10.0 84 6-92 10-93 (102)
187 2dnm_A SRP46 splicing factor; 99.7 1.1E-16 3.9E-21 136.6 7.5 82 291-372 11-93 (103)
188 1x5s_A Cold-inducible RNA-bind 99.7 1.4E-16 4.7E-21 135.8 7.9 83 291-373 10-93 (102)
189 2cq4_A RNA binding motif prote 99.7 2E-16 6.8E-21 137.8 9.1 82 293-375 25-107 (114)
190 2ytc_A PRE-mRNA-splicing facto 99.7 5.4E-16 1.9E-20 127.3 11.2 82 2-89 3-85 (85)
191 1x4h_A RNA-binding protein 28; 99.7 2.4E-16 8.2E-21 136.5 9.5 84 291-374 13-103 (111)
192 2cpi_A CCR4-NOT transcription 99.7 2.1E-16 7.3E-21 136.9 9.2 83 291-373 13-102 (111)
193 2cq1_A PTB-like protein L; RRM 99.7 2.6E-16 8.9E-21 133.3 9.5 80 290-374 12-93 (101)
194 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.7E-16 1.3E-20 141.3 11.1 82 7-88 59-140 (140)
195 2dis_A Unnamed protein product 99.7 3.2E-16 1.1E-20 135.3 10.2 86 8-93 5-94 (109)
196 2khc_A Testis-specific RNP-typ 99.7 1.7E-16 5.9E-21 139.1 8.6 81 290-370 37-118 (118)
197 1x4b_A Heterogeneous nuclear r 99.7 4.9E-16 1.7E-20 135.7 11.5 83 11-94 27-109 (116)
198 2dgx_A KIAA0430 protein; RRM d 99.7 4.1E-16 1.4E-20 131.3 10.5 83 7-92 5-91 (96)
199 2jwn_A Embryonic polyadenylate 99.7 4.5E-16 1.5E-20 137.7 11.3 81 11-92 36-116 (124)
200 1x4d_A Matrin 3; structural ge 99.7 7.9E-17 2.7E-21 136.5 6.1 77 291-372 13-92 (102)
201 3s7r_A Heterogeneous nuclear r 99.7 6.5E-16 2.2E-20 127.5 11.5 79 290-369 8-87 (87)
202 2cpy_A RNA-binding protein 12; 99.7 2.3E-16 7.8E-21 137.4 9.1 83 7-91 11-94 (114)
203 2dha_A FLJ20171 protein; RRM d 99.7 2.4E-16 8.1E-21 138.5 9.2 87 290-377 20-110 (123)
204 2kxn_B Transformer-2 protein h 99.7 1.3E-16 4.4E-21 142.0 7.6 84 290-373 43-127 (129)
205 2ki2_A SS-DNA binding protein 99.7 5.6E-17 1.9E-21 134.9 4.9 80 12-92 2-81 (90)
206 2ad9_A Polypyrimidine tract-bi 99.7 4.2E-16 1.4E-20 135.4 10.5 83 7-95 27-111 (119)
207 2dng_A Eukaryotic translation 99.7 5.4E-16 1.8E-20 132.4 11.0 82 290-373 12-94 (103)
208 2cpe_A RNA-binding protein EWS 99.6 2.3E-16 8E-21 137.1 8.9 85 290-374 12-105 (113)
209 1wi8_A EIF-4B, eukaryotic tran 99.6 2.5E-16 8.6E-21 134.7 8.9 83 290-374 12-96 (104)
210 2ad9_A Polypyrimidine tract-bi 99.6 1.7E-16 5.7E-21 138.0 7.8 80 290-374 28-109 (119)
211 2fc9_A NCL protein; structure 99.6 5.9E-16 2E-20 131.7 11.1 85 5-93 9-93 (101)
212 2jvr_A Nucleolar protein 3; RN 99.6 2.3E-16 7.8E-21 136.0 8.5 85 7-95 24-109 (111)
213 2err_A Ataxin-2-binding protei 99.6 3.6E-16 1.2E-20 135.0 9.8 83 7-91 25-107 (109)
214 1u6f_A Tcubp1, RNA-binding pro 99.6 2.6E-16 8.9E-21 142.2 9.2 84 291-374 40-124 (139)
215 1wg5_A Heterogeneous nuclear r 99.6 5.9E-16 2E-20 132.4 10.8 84 7-92 11-95 (104)
216 2a3j_A U1 small nuclear ribonu 99.6 2.6E-16 8.8E-21 139.2 8.7 85 291-377 27-115 (127)
217 2mss_A Protein (musashi1); RNA 99.6 1.4E-16 4.7E-21 127.6 6.3 74 295-369 1-75 (75)
218 1x5o_A RNA binding motif, sing 99.6 4.8E-16 1.7E-20 135.3 10.2 82 291-372 23-112 (114)
219 2cpi_A CCR4-NOT transcription 99.6 3.7E-16 1.3E-20 135.4 9.4 84 9-92 13-102 (111)
220 2j76_E EIF-4B, EIF4B, eukaryot 99.6 6.5E-17 2.2E-21 137.4 4.5 82 290-373 16-99 (100)
221 2fc8_A NCL protein; structure 99.6 9.3E-16 3.2E-20 130.6 11.7 86 6-94 10-95 (102)
222 2cqp_A RNA-binding protein 12; 99.6 2.7E-16 9.1E-21 133.0 8.2 82 291-372 13-95 (98)
223 1x4c_A Splicing factor, argini 99.6 1.1E-15 3.7E-20 131.7 12.1 82 4-92 8-94 (108)
224 1wez_A HnRNP H', FTP-3, hetero 99.6 2.2E-16 7.6E-21 134.4 7.6 80 291-372 13-92 (102)
225 2ek1_A RNA-binding protein 12; 99.6 2.7E-16 9.1E-21 132.1 8.1 80 292-371 14-94 (95)
226 1x4d_A Matrin 3; structural ge 99.6 3.1E-16 1.1E-20 132.8 8.4 82 7-94 11-95 (102)
227 2dh8_A DAZ-associated protein 99.6 3.7E-16 1.3E-20 133.9 9.0 84 290-374 13-97 (105)
228 1wel_A RNA-binding protein 12; 99.6 3.1E-16 1E-20 138.8 8.7 86 291-377 23-109 (124)
229 2dnq_A RNA-binding protein 4B; 99.6 1.1E-15 3.8E-20 127.0 11.5 80 7-94 4-83 (90)
230 2cq4_A RNA binding motif prote 99.6 3.3E-16 1.1E-20 136.4 8.6 78 12-90 26-103 (114)
231 2hgl_A HNRPF protein, heteroge 99.6 3.7E-16 1.3E-20 139.8 9.1 82 6-89 39-123 (136)
232 2dgp_A Bruno-like 4, RNA bindi 99.6 2.5E-16 8.5E-21 135.2 7.7 83 291-373 11-97 (106)
233 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.8E-16 2.3E-20 143.7 11.3 87 7-93 68-154 (165)
234 2cq1_A PTB-like protein L; RRM 99.6 1.2E-15 4.2E-20 129.2 11.8 81 7-93 11-93 (101)
235 2db1_A Heterogeneous nuclear r 99.6 4.1E-16 1.4E-20 136.6 9.2 82 7-90 13-97 (118)
236 1wg5_A Heterogeneous nuclear r 99.6 2.6E-16 9E-21 134.6 7.6 82 291-373 13-95 (104)
237 1nu4_A U1A RNA binding domain; 99.6 3.1E-16 1E-20 132.3 7.7 85 5-92 2-90 (97)
238 3ex7_B RNA-binding protein 8A; 99.6 3.7E-16 1.3E-20 138.6 8.6 85 290-374 19-104 (126)
239 1x4a_A Splicing factor, argini 99.6 6.5E-16 2.2E-20 133.3 9.9 80 291-372 20-99 (109)
240 2nlw_A Eukaryotic translation 99.6 2E-16 6.7E-21 135.6 6.4 80 292-372 14-100 (105)
241 2nlw_A Eukaryotic translation 99.6 5E-16 1.7E-20 133.1 8.9 82 7-90 11-99 (105)
242 2cqd_A RNA-binding region cont 99.6 6.4E-16 2.2E-20 135.0 9.8 82 290-372 14-96 (116)
243 2krb_A Eukaryotic translation 99.6 1.5E-16 5.1E-21 129.5 5.3 74 293-367 1-81 (81)
244 2jwn_A Embryonic polyadenylate 99.6 8.5E-16 2.9E-20 135.9 10.5 78 293-371 36-114 (124)
245 2lmi_A GRSF-1, G-rich sequence 99.6 1.3E-16 4.6E-21 137.2 5.1 84 291-375 9-95 (107)
246 1x4g_A Nucleolysin TIAR; struc 99.6 1.2E-15 3.9E-20 131.8 11.0 84 7-96 21-104 (109)
247 2krb_A Eukaryotic translation 99.6 4.4E-16 1.5E-20 126.7 7.8 73 11-85 1-80 (81)
248 2rs2_A Musashi-1, RNA-binding 99.6 4E-16 1.4E-20 134.6 8.0 83 291-374 23-106 (109)
249 1x4e_A RNA binding motif, sing 99.6 1.3E-16 4.4E-21 131.1 4.6 80 291-370 3-83 (85)
250 1h2v_Z 20 kDa nuclear CAP bind 99.6 7E-16 2.4E-20 142.3 10.0 84 291-374 37-121 (156)
251 1why_A Hypothetical protein ri 99.6 1.5E-15 5.2E-20 128.0 11.1 81 6-92 12-94 (97)
252 2cqg_A TDP-43, TAR DNA-binding 99.6 1.7E-15 5.9E-20 129.2 11.6 82 291-374 13-95 (103)
253 1wex_A Hypothetical protein (r 99.6 4.1E-16 1.4E-20 133.0 7.5 79 291-374 13-93 (104)
254 3pgw_S U1-70K; protein-RNA com 99.6 7.1E-17 2.4E-21 173.1 3.4 82 292-373 101-183 (437)
255 2fc9_A NCL protein; structure 99.6 7E-16 2.4E-20 131.2 8.9 79 291-372 13-91 (101)
256 1iqt_A AUF1, heterogeneous nuc 99.6 2.4E-16 8.4E-21 126.1 5.6 75 13-88 1-75 (75)
257 1x5o_A RNA binding motif, sing 99.6 1.6E-15 5.5E-20 132.0 11.1 82 7-89 21-110 (114)
258 2dnn_A RNA-binding protein 12; 99.6 6.9E-16 2.4E-20 132.7 8.6 79 8-89 13-91 (109)
259 2jvr_A Nucleolar protein 3; RN 99.6 5.7E-16 1.9E-20 133.5 8.0 78 292-372 27-105 (111)
260 2m2b_A RNA-binding protein 10; 99.6 1E-16 3.5E-21 143.3 3.4 81 291-372 21-108 (131)
261 2cpj_A Non-POU domain-containi 99.6 1.6E-15 5.5E-20 128.4 10.6 81 7-93 11-91 (99)
262 2la4_A Nuclear and cytoplasmic 99.6 1.3E-15 4.5E-20 129.4 10.1 78 7-90 23-100 (101)
263 2ki2_A SS-DNA binding protein 99.6 1.8E-16 6E-21 131.8 4.4 80 294-374 2-82 (90)
264 1fj7_A Nucleolin RBD1, protein 99.6 1.6E-16 5.3E-21 135.2 4.2 84 7-92 13-96 (101)
265 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.1E-16 1.1E-20 126.2 5.6 75 294-369 1-76 (77)
266 1nu4_A U1A RNA binding domain; 99.6 4.5E-16 1.6E-20 131.3 6.8 84 290-375 5-92 (97)
267 2la4_A Nuclear and cytoplasmic 99.6 8.8E-16 3E-20 130.6 8.6 77 291-372 25-101 (101)
268 1x4b_A Heterogeneous nuclear r 99.6 9.1E-16 3.1E-20 134.0 8.7 82 292-374 26-108 (116)
269 2cpx_A Hypothetical protein FL 99.6 4.3E-16 1.5E-20 135.9 6.6 87 7-93 21-107 (115)
270 2dgt_A RNA-binding protein 30; 99.6 3.3E-15 1.1E-19 124.6 11.7 81 5-93 4-84 (92)
271 3lqv_A PRE-mRNA branch site pr 99.6 1.1E-15 3.6E-20 133.4 8.9 81 291-373 6-86 (115)
272 1wel_A RNA-binding protein 12; 99.6 4.5E-16 1.6E-20 137.7 6.6 83 7-90 21-103 (124)
273 2lcw_A RNA-binding protein FUS 99.4 4.5E-17 1.5E-21 142.4 0.0 90 7-96 3-100 (116)
274 2lmi_A GRSF-1, G-rich sequence 99.6 6.1E-16 2.1E-20 133.0 7.0 83 6-90 6-91 (107)
275 2jvo_A Nucleolar protein 3; nu 99.6 2.4E-15 8.2E-20 129.5 10.7 78 7-92 27-104 (108)
276 2dnp_A RNA-binding protein 14; 99.6 2.8E-15 9.5E-20 124.6 10.6 80 6-93 4-83 (90)
277 1x4c_A Splicing factor, argini 99.6 2.1E-15 7.1E-20 130.0 10.1 75 292-372 14-93 (108)
278 3q2s_C Cleavage and polyadenyl 99.6 1.2E-15 4.1E-20 149.6 9.6 81 10-90 67-149 (229)
279 2jvo_A Nucleolar protein 3; nu 99.6 1.4E-15 4.7E-20 130.9 8.9 80 289-375 27-106 (108)
280 1why_A Hypothetical protein ri 99.6 1.5E-15 5.1E-20 128.1 8.9 78 291-373 15-94 (97)
281 2dis_A Unnamed protein product 99.6 9.7E-16 3.3E-20 132.2 7.9 84 291-374 6-94 (109)
282 1x4f_A Matrin 3; structural ge 99.6 3.3E-16 1.1E-20 134.5 4.8 80 290-374 22-104 (112)
283 2dnq_A RNA-binding protein 4B; 99.6 1.9E-15 6.4E-20 125.6 9.2 76 291-373 6-81 (90)
284 1x4f_A Matrin 3; structural ge 99.6 7.6E-16 2.6E-20 132.3 6.9 80 7-92 21-103 (112)
285 2xnq_A Nuclear polyadenylated 99.6 2.6E-15 9E-20 126.6 10.2 77 289-372 18-95 (97)
286 2xs2_A Deleted in azoospermia- 99.6 9.3E-16 3.2E-20 130.7 7.3 81 292-374 8-88 (102)
287 2xnq_A Nuclear polyadenylated 99.6 3.5E-15 1.2E-19 125.8 10.8 77 7-91 18-95 (97)
288 1x4g_A Nucleolysin TIAR; struc 99.6 2.6E-15 8.9E-20 129.5 9.8 79 290-373 22-100 (109)
289 2dgu_A Heterogeneous nuclear r 99.6 4.5E-15 1.6E-19 126.6 11.2 82 4-93 4-85 (103)
290 2xs2_A Deleted in azoospermia- 99.6 7.8E-16 2.7E-20 131.1 6.3 84 5-91 3-86 (102)
291 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.3E-15 7.8E-20 136.0 9.7 79 291-369 61-140 (140)
292 2ytc_A PRE-mRNA-splicing facto 99.6 2.9E-15 9.8E-20 123.0 9.1 75 291-370 10-85 (85)
293 2hvz_A Splicing factor, argini 99.6 9.1E-16 3.1E-20 130.5 6.3 76 294-373 1-76 (101)
294 2e5j_A Methenyltetrahydrofolat 99.6 3.8E-15 1.3E-19 125.6 10.0 80 7-91 15-94 (97)
295 2f3j_A RNA and export factor b 99.6 2.9E-15 9.9E-20 140.8 10.1 84 7-91 84-167 (177)
296 2j8a_A Histone-lysine N-methyl 99.6 2.9E-15 9.9E-20 129.1 9.1 79 294-372 3-96 (136)
297 2kvi_A Nuclear polyadenylated 99.6 2.5E-15 8.5E-20 126.5 8.6 79 6-92 5-84 (96)
298 2hgm_A HNRPF protein, heteroge 99.6 8.4E-16 2.9E-20 135.3 5.7 82 291-374 40-123 (126)
299 1fjc_A Nucleolin RBD2, protein 99.6 1.8E-15 6E-20 127.4 7.5 79 291-373 14-92 (96)
300 2cq2_A Hypothetical protein LO 99.6 1.5E-15 5.2E-20 130.5 7.0 77 290-371 22-105 (114)
301 1whx_A Hypothetical protein ri 99.6 1E-15 3.5E-20 132.5 6.1 78 8-91 7-84 (111)
302 1wg1_A KIAA1579 protein, homol 99.6 4E-15 1.4E-19 123.0 9.3 77 9-92 3-79 (88)
303 2cpj_A Non-POU domain-containi 99.6 1.9E-15 6.5E-20 128.0 7.4 77 291-372 13-89 (99)
304 1wf1_A RNA-binding protein RAL 99.6 6.9E-15 2.3E-19 127.1 10.9 77 8-92 24-101 (110)
305 2dgt_A RNA-binding protein 30; 99.6 6.2E-15 2.1E-19 123.0 10.3 75 291-372 8-82 (92)
306 1whx_A Hypothetical protein ri 99.6 2E-15 6.8E-20 130.7 7.4 76 292-372 9-84 (111)
307 2cqh_A IGF-II mRNA-binding pro 99.6 4.3E-15 1.5E-19 124.2 9.1 80 7-93 4-85 (93)
308 2hgn_A Heterogeneous nuclear r 99.6 4.4E-16 1.5E-20 139.8 3.2 82 291-374 44-125 (139)
309 2e5j_A Methenyltetrahydrofolat 99.6 2.2E-15 7.4E-20 127.1 7.2 79 291-373 17-95 (97)
310 2diu_A KIAA0430 protein; struc 99.6 8E-15 2.7E-19 119.5 10.1 75 10-94 7-87 (96)
311 2kvi_A Nuclear polyadenylated 99.6 1.8E-15 6.2E-20 127.3 6.5 79 290-375 7-86 (96)
312 2hgn_A Heterogeneous nuclear r 99.6 1.3E-15 4.5E-20 136.6 5.9 83 7-92 42-124 (139)
313 2pe8_A Splicing factor 45; RRM 99.6 1.2E-14 4.2E-19 124.0 11.6 82 290-371 5-93 (105)
314 2dha_A FLJ20171 protein; RRM d 99.6 3.5E-15 1.2E-19 131.0 8.3 79 9-89 21-103 (123)
315 2f3j_A RNA and export factor b 99.6 3.1E-15 1.1E-19 140.6 8.5 82 291-372 86-167 (177)
316 2fc8_A NCL protein; structure 99.6 5E-15 1.7E-19 126.1 9.0 82 290-374 12-94 (102)
317 3d2w_A TAR DNA-binding protein 99.6 5.9E-15 2E-19 122.2 9.1 78 290-375 8-87 (89)
318 2hgm_A HNRPF protein, heteroge 99.6 3.7E-15 1.3E-19 131.2 8.1 81 7-90 38-120 (126)
319 2dnp_A RNA-binding protein 14; 99.6 6.6E-15 2.2E-19 122.3 9.1 75 291-372 7-81 (90)
320 2lcw_A RNA-binding protein FUS 99.3 2.2E-16 7.4E-21 138.0 0.0 84 292-375 6-98 (116)
321 1fjc_A Nucleolin RBD2, protein 99.6 3.9E-15 1.3E-19 125.3 7.7 81 7-92 12-92 (96)
322 1x5p_A Negative elongation fac 99.6 2.5E-14 8.6E-19 120.5 12.7 79 7-93 11-89 (97)
323 1sjr_A Polypyrimidine tract-bi 99.6 7.8E-15 2.7E-19 133.9 10.2 81 7-91 42-124 (164)
324 2cpx_A Hypothetical protein FL 99.6 2.8E-15 9.6E-20 130.6 6.9 81 291-374 23-107 (115)
325 3egn_A RNA-binding protein 40; 99.6 2.5E-15 8.6E-20 136.4 6.8 86 290-375 42-133 (143)
326 1iqt_A AUF1, heterogeneous nuc 99.6 1.2E-15 3.9E-20 122.2 4.0 74 295-369 1-75 (75)
327 2cpd_A Apobec-1 stimulating pr 99.6 2.7E-14 9.2E-19 120.8 12.7 79 7-93 11-91 (99)
328 2cqh_A IGF-II mRNA-binding pro 99.6 2.2E-15 7.6E-20 126.0 5.8 77 291-373 6-84 (93)
329 1wg1_A KIAA1579 protein, homol 99.6 5.6E-15 1.9E-19 122.2 8.1 75 292-372 4-78 (88)
330 1fj7_A Nucleolin RBD1, protein 99.6 3E-16 1E-20 133.5 0.3 81 292-374 16-97 (101)
331 2cpd_A Apobec-1 stimulating pr 99.6 1.2E-14 4.3E-19 122.9 10.3 76 291-373 13-90 (99)
332 2e5g_A U6 snRNA-specific termi 99.6 2.2E-14 7.7E-19 120.1 11.7 79 8-92 5-83 (94)
333 1sjr_A Polypyrimidine tract-bi 99.6 7E-15 2.4E-19 134.3 9.2 77 293-372 46-124 (164)
334 2j8a_A Histone-lysine N-methyl 99.6 7.3E-15 2.5E-19 126.6 8.5 78 12-89 3-94 (136)
335 2dgu_A Heterogeneous nuclear r 99.6 1.1E-14 3.7E-19 124.3 9.4 77 291-374 9-85 (103)
336 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-14 5.1E-19 127.2 10.4 76 294-373 29-107 (130)
337 3pgw_S U1-70K; protein-RNA com 99.5 1.5E-15 5E-20 162.9 4.6 152 28-179 9-183 (437)
338 3zzy_A Polypyrimidine tract-bi 99.5 1.6E-14 5.5E-19 127.0 10.4 77 10-91 27-106 (130)
339 1x5p_A Negative elongation fac 99.5 1.4E-14 4.7E-19 122.1 9.5 76 291-373 13-88 (97)
340 1wf1_A RNA-binding protein RAL 99.5 8.1E-15 2.8E-19 126.7 8.1 74 292-372 26-100 (110)
341 2e44_A Insulin-like growth fac 99.5 1.6E-14 5.4E-19 121.5 9.3 81 7-91 11-92 (96)
342 3egn_A RNA-binding protein 40; 99.5 3.5E-15 1.2E-19 135.4 5.5 85 7-91 41-130 (143)
343 2cq2_A Hypothetical protein LO 99.5 1.4E-14 4.8E-19 124.5 8.4 81 7-93 21-108 (114)
344 3beg_B Splicing factor, argini 99.5 1.1E-14 3.7E-19 126.9 7.5 78 5-89 10-92 (115)
345 3d2w_A TAR DNA-binding protein 99.5 2E-14 6.9E-19 119.0 8.3 80 5-91 5-84 (89)
346 2e44_A Insulin-like growth fac 99.5 1.9E-14 6.6E-19 120.9 8.2 79 292-373 14-93 (96)
347 2diu_A KIAA0430 protein; struc 99.5 1.3E-14 4.6E-19 118.2 6.7 71 294-373 10-85 (96)
348 2e5g_A U6 snRNA-specific termi 99.5 2.6E-14 8.8E-19 119.7 8.4 76 292-372 7-82 (94)
349 2dnl_A Cytoplasmic polyadenyla 99.5 3E-14 1E-18 123.9 9.1 79 7-88 4-85 (114)
350 2e5i_A Heterogeneous nuclear r 99.5 4.4E-14 1.5E-18 123.7 9.8 75 294-373 26-103 (124)
351 2pe8_A Splicing factor 45; RRM 99.5 6.2E-14 2.1E-18 119.6 10.4 82 8-89 5-92 (105)
352 3beg_B Splicing factor, argini 99.5 1.9E-14 6.4E-19 125.4 7.2 74 292-371 15-93 (115)
353 2e5i_A Heterogeneous nuclear r 99.5 7.7E-14 2.6E-18 122.2 10.9 74 12-91 26-102 (124)
354 2hzc_A Splicing factor U2AF 65 99.5 3.3E-14 1.1E-18 117.1 8.2 73 8-87 3-86 (87)
355 1wf0_A TDP-43, TAR DNA-binding 99.5 2.7E-14 9.3E-19 118.0 7.5 78 9-93 3-80 (88)
356 2voo_A Lupus LA protein; RNA-b 99.5 8.6E-14 2.9E-18 132.7 11.3 80 292-372 108-187 (193)
357 2bz2_A Negative elongation fac 99.5 9.3E-14 3.2E-18 122.0 9.6 79 7-93 35-113 (121)
358 2voo_A Lupus LA protein; RNA-b 99.5 1.2E-13 4.2E-18 131.6 11.0 79 11-91 109-187 (193)
359 2bz2_A Negative elongation fac 99.5 3.9E-14 1.3E-18 124.4 6.9 79 290-375 36-114 (121)
360 2hzc_A Splicing factor U2AF 65 99.5 8.7E-14 3E-18 114.6 8.5 71 292-368 5-86 (87)
361 3u1l_A PRE-mRNA-splicing facto 99.5 7E-14 2.4E-18 136.4 8.6 82 6-93 129-231 (240)
362 1jmt_A Splicing factor U2AF 35 99.5 3.8E-14 1.3E-18 120.8 5.9 72 298-369 20-103 (104)
363 1wf0_A TDP-43, TAR DNA-binding 99.5 2.6E-14 8.7E-19 118.1 4.6 77 292-374 4-80 (88)
364 2dnl_A Cytoplasmic polyadenyla 99.5 5.3E-14 1.8E-18 122.3 6.6 77 292-371 7-87 (114)
365 3v4m_A Splicing factor U2AF 65 99.5 1.2E-13 4.2E-18 117.8 8.2 82 291-372 3-97 (105)
366 3ue2_A Poly(U)-binding-splicin 99.4 3.8E-13 1.3E-17 117.0 10.0 82 290-371 17-108 (118)
367 3u1l_A PRE-mRNA-splicing facto 99.4 1.5E-13 5E-18 134.1 7.6 78 292-374 133-231 (240)
368 2dit_A HIV TAT specific factor 99.4 7.1E-13 2.4E-17 114.7 9.3 80 291-373 13-103 (112)
369 2dit_A HIV TAT specific factor 99.4 3.1E-12 1.1E-16 110.7 12.2 85 5-93 9-104 (112)
370 3v4m_A Splicing factor U2AF 65 99.3 1.8E-12 6.2E-17 110.5 8.4 81 9-89 3-95 (105)
371 1jmt_A Splicing factor U2AF 35 99.3 5.1E-13 1.8E-17 113.8 4.3 72 16-88 20-103 (104)
372 3ue2_A Poly(U)-binding-splicin 99.3 3.7E-12 1.3E-16 110.7 9.1 81 9-89 18-107 (118)
373 2d9o_A DNAJ (HSP40) homolog, s 99.3 2E-11 6.9E-16 102.7 12.6 80 8-94 7-93 (100)
374 3s6e_A RNA-binding protein 39; 99.3 9.7E-12 3.3E-16 107.3 9.2 79 292-373 6-94 (114)
375 3tht_A Alkylated DNA repair pr 99.2 8.9E-12 3E-16 128.0 8.2 76 290-370 15-97 (345)
376 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.2E-11 4.2E-16 104.0 7.5 64 303-372 27-90 (100)
377 3tht_A Alkylated DNA repair pr 99.2 3.5E-11 1.2E-15 123.6 8.9 77 7-89 14-97 (345)
378 3s6e_A RNA-binding protein 39; 99.2 9.9E-11 3.4E-15 101.0 9.7 79 7-89 3-91 (114)
379 1owx_A Lupus LA protein, SS-B, 99.0 6.8E-10 2.3E-14 95.8 9.1 82 290-376 15-100 (121)
380 2dnr_A Synaptojanin-1; RRM dom 99.0 7.7E-10 2.6E-14 89.3 7.7 74 290-371 4-85 (91)
381 1owx_A Lupus LA protein, SS-B, 98.9 3.9E-09 1.3E-13 91.1 8.6 76 8-89 15-94 (121)
382 3dxb_A Thioredoxin N-terminall 98.9 3.6E-09 1.2E-13 103.0 8.3 69 304-372 140-213 (222)
383 2dnr_A Synaptojanin-1; RRM dom 98.9 7.9E-09 2.7E-13 83.4 8.6 74 9-91 5-86 (91)
384 1ufw_A Synaptojanin 2; RNP dom 98.8 4.8E-09 1.7E-13 85.0 5.4 73 290-370 12-93 (95)
385 3dxb_A Thioredoxin N-terminall 98.6 4.3E-08 1.5E-12 95.4 8.3 81 9-89 122-211 (222)
386 1ufw_A Synaptojanin 2; RNP dom 98.6 3.6E-08 1.2E-12 79.9 5.6 73 7-88 11-92 (95)
387 2l9w_A U4/U6 snRNA-associated- 98.3 2.3E-06 8E-11 70.6 8.2 73 292-369 20-97 (117)
388 2dhx_A Poly (ADP-ribose) polym 97.9 6.6E-05 2.2E-09 61.6 10.4 89 9-112 6-99 (104)
389 1wey_A Calcipressin 1; structu 97.8 4.8E-05 1.6E-09 62.7 6.6 75 11-91 5-84 (104)
390 1wey_A Calcipressin 1; structu 97.5 0.00011 3.8E-09 60.6 5.7 73 293-370 5-82 (104)
391 2l9w_A U4/U6 snRNA-associated- 97.5 0.00041 1.4E-08 57.3 8.9 71 10-86 20-95 (117)
392 1uw4_A UPF3X; nonsense mediate 97.4 0.00059 2E-08 55.3 8.3 68 12-79 2-71 (91)
393 2dhx_A Poly (ADP-ribose) polym 96.7 0.0073 2.5E-07 49.5 8.5 70 292-369 7-81 (104)
394 1whv_A Poly(A)-specific ribonu 96.6 0.0052 1.8E-07 49.8 6.9 59 7-74 12-70 (100)
395 1wwh_A Nucleoporin 35, nucleop 96.4 0.008 2.7E-07 51.0 7.4 73 7-87 20-93 (119)
396 2l08_A Regulator of nonsense t 96.4 0.0036 1.2E-07 51.0 4.7 70 10-79 8-79 (97)
397 1wwh_A Nucleoporin 35, nucleop 96.3 0.022 7.7E-07 48.2 9.7 77 291-374 22-99 (119)
398 1uw4_A UPF3X; nonsense mediate 96.1 0.028 9.5E-07 45.4 8.9 67 294-360 2-71 (91)
399 1whv_A Poly(A)-specific ribonu 96.0 0.015 5.1E-07 47.1 6.6 53 295-355 18-70 (100)
400 3ctr_A Poly(A)-specific ribonu 95.8 0.008 2.7E-07 48.8 4.2 53 13-74 8-60 (101)
401 3pq1_A Poly(A) RNA polymerase; 95.6 0.0048 1.7E-07 65.4 2.8 56 11-72 53-108 (464)
402 3ctr_A Poly(A)-specific ribonu 95.1 0.023 8E-07 46.1 4.6 53 295-355 8-60 (101)
403 3p3d_A Nucleoporin 53; structu 93.7 0.069 2.4E-06 45.8 4.7 75 294-370 8-97 (132)
404 2l08_A Regulator of nonsense t 92.4 0.25 8.5E-06 40.2 6.0 77 293-369 9-93 (97)
405 3pq1_A Poly(A) RNA polymerase; 91.8 0.082 2.8E-06 56.0 3.2 55 294-353 54-108 (464)
406 3p3d_A Nucleoporin 53; structu 90.9 0.28 9.5E-06 42.1 5.0 76 11-88 7-96 (132)
407 3d45_A Poly(A)-specific ribonu 81.1 2.4 8.2E-05 45.6 7.0 57 11-76 440-496 (507)
408 2z73_A Rhodopsin; visual pigme 80.0 0.35 1.2E-05 51.0 0.0 9 100-108 69-77 (448)
409 3d45_A Poly(A)-specific ribonu 69.2 8.2 0.00028 41.4 7.3 54 294-355 441-494 (507)
410 2g0c_A ATP-dependent RNA helic 52.8 14 0.00046 28.1 3.9 59 304-370 12-75 (76)
411 3j21_T 50S ribosomal protein L 42.4 67 0.0023 25.2 6.4 56 295-352 24-81 (86)
412 3lcn_C MRNA transport factor G 28.0 67 0.0023 19.1 3.1 19 591-609 9-27 (29)
413 3u5e_X 60S ribosomal protein L 25.2 1.2E+02 0.0042 26.0 5.7 56 295-352 80-137 (142)
414 4a17_R RPL23A, 60S ribosomal p 24.5 1.3E+02 0.0043 26.2 5.7 56 295-352 88-145 (150)
415 4bby_A Alkyldihydroxyacetoneph 23.9 69 0.0024 35.4 5.1 56 300-355 350-409 (658)
416 4eyt_A Telomerase associated p 23.0 2.7E+02 0.0092 21.7 8.9 71 7-85 8-85 (129)
417 2g0c_A ATP-dependent RNA helic 21.9 69 0.0024 24.0 3.3 58 22-88 12-74 (76)
418 1vq8_S 50S ribosomal protein L 21.1 1.5E+02 0.005 23.1 5.0 53 295-349 23-77 (85)
419 2gle_A Neurabin-1; SAM domain, 21.0 81 0.0028 23.5 3.5 42 569-610 31-73 (74)
420 2wx3_A MRNA-decapping enzyme 1 20.6 41 0.0014 23.4 1.4 21 581-601 18-38 (51)
421 3iz5_X 60S ribosomal protein L 20.2 1.2E+02 0.0041 26.5 4.7 56 295-352 90-147 (152)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.5e-43 Score=360.57 Aligned_cols=257 Identities=23% Similarity=0.318 Sum_probs=232.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
+++++|||+|||.++|+++|+++|+.|| |.+|++ ++++|||||.|.+.++|++|++.||+..+.|++|+|.|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3578999999999999999999999999 999988 347789999999999999999999999999999999997
Q ss_pred CCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcccC
Q 043470 89 CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGD 167 (629)
Q Consensus 89 ~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g 167 (629)
..+ .+|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|++.++|..+.|
T Consensus 93 ~~~--------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 93 PTD--------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp CCS--------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCC--------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 643 789999999999999999999999999999999887 89999999999999999999999999999999
Q ss_pred ceeeeecccccCCCCCCCCccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHH
Q 043470 168 KRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRA 247 (629)
Q Consensus 168 ~~l~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~A 247 (629)
+.|.|.+........
T Consensus 165 ~~i~v~~a~~~~~~~----------------------------------------------------------------- 179 (284)
T 3smz_A 165 RTLYVHWTDAGQLTP----------------------------------------------------------------- 179 (284)
T ss_dssp EECEEEECCGGGCCT-----------------------------------------------------------------
T ss_pred cEEEEEECCCCCCCc-----------------------------------------------------------------
Confidence 999997654321100
Q ss_pred HHHhCCCeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCC-CHHHHHHHHhcCCCeEEEEEe
Q 043470 248 LEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDV-TDEELKAHFSQCGTITSAKVM 326 (629)
Q Consensus 248 v~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~-t~~~l~~~F~~~G~v~~~~v~ 326 (629)
....+++|||+|||+++ |+++|+++|+.||.|.+|+|+
T Consensus 180 -----------------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~ 218 (284)
T 3smz_A 180 -----------------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLA 218 (284)
T ss_dssp -----------------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEE
T ss_pred -----------------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEE
Confidence 00245689999999995 999999999999999999999
Q ss_pred eCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccchHHHHHHHHHHHHhh
Q 043470 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQH 386 (629)
Q Consensus 327 ~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~~~~~~~~~~~~~~ 386 (629)
.+.+|.++|||||+|.+.++|.+|+..|||..++|++|.|.|+.++..++.++.++....
T Consensus 219 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~aaq 278 (284)
T 3smz_A 219 CGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQ 278 (284)
T ss_dssp ECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHHHT
T ss_pred ECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhHHH
Confidence 999999999999999999999999999999999999999999999999888777766543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.5e-42 Score=356.23 Aligned_cols=252 Identities=18% Similarity=0.332 Sum_probs=216.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
...+..++|||+|||.++|+++|+++|+.||+|.+|+|++|..+ ++|||||.|.+.++|++|++ +|+..+.|++|+|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEE
Confidence 35667899999999999999999999999999999999998654 57999999999999999995 8999999999999
Q ss_pred eccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcc
Q 043470 86 SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV 165 (629)
Q Consensus 86 ~~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l 165 (629)
.|+
T Consensus 113 ~~~----------------------------------------------------------------------------- 115 (292)
T 2ghp_A 113 SHL----------------------------------------------------------------------------- 115 (292)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred EEC-----------------------------------------------------------------------------
Confidence 862
Q ss_pred cCceeeeecccccCCCCCCCCccccccccccCCCCCcCHHHHHHHhcccC-CeeEEEEeeCCCCCceeEEEEEeCCHHHH
Q 043470 166 GDKRIYVGRFIKKSDRVLPSPAAKYTNLFMKNLDSDVTEEHLVEKFSKFG-KIASLLIARDENGTSRGFGFVNFDNPDDA 244 (629)
Q Consensus 166 ~g~~l~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G-~v~~~~v~~~~~g~s~g~afV~F~~~e~A 244 (629)
..++|||+|||.++++++|+++|+.|| .|.++.+..+..|.++|||||.|.+.++|
T Consensus 116 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a 172 (292)
T 2ghp_A 116 -----------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDA 172 (292)
T ss_dssp -----------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHH
T ss_pred -----------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHH
Confidence 146899999999999999999999999 99999999988889999999999999999
Q ss_pred HHHHHHhCCCeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCC-CCHHHHHHHHhcCCCeEEE
Q 043470 245 RRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDD-VTDEELKAHFSQCGTITSA 323 (629)
Q Consensus 245 ~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~~ 323 (629)
.+|++.|++..+.|+.|.|.++......... ......+++|||+|||+. +|+++|+++|+.||.|.+|
T Consensus 173 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~-----------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v 241 (292)
T 2ghp_A 173 RYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT-----------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKI 241 (292)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCC--------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEE
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCCcccccc-----------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEE
Confidence 9999999999999999999998765432211 123446789999999999 9999999999999999999
Q ss_pred EEeeCCC--CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 324 KVMRDEK--GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 324 ~v~~~~~--g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
+++.+.+ |.++|||||+|.+.++|.+|+ .|||..|+|++|.|.|+.+|
T Consensus 242 ~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 242 NIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp ECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999987 999999999999999999999 99999999999999999876
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5.7e-33 Score=271.37 Aligned_cols=173 Identities=53% Similarity=0.885 Sum_probs=160.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
+..+.++|||+|||+++||++|+++|++||+|.+|+|++|..|++++|||||.|.+.++|++|++.+|+..+.|+.+++.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCccc
Q 043470 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG 166 (629)
Q Consensus 87 ~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~ 166 (629)
|+............+|||+||+.++++++|+++|+.||.|.+|+|..|..+ ++|||||+|.+.++|.+|++.|||..+.
T Consensus 91 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 91 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp ECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-CceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 999887777778889999999999999999999999999999999998644 8999999999999999999999999999
Q ss_pred CceeeeecccccCC
Q 043470 167 DKRIYVGRFIKKSD 180 (629)
Q Consensus 167 g~~l~v~~~~~~~~ 180 (629)
|+.|.|.++.++.+
T Consensus 170 g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 170 DRKVFVGRFKSRKE 183 (213)
T ss_dssp TEECEEEECCCHHH
T ss_pred CEEEEEEEcCCCcc
Confidence 99999988766543
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=2.2e-31 Score=260.13 Aligned_cols=175 Identities=36% Similarity=0.593 Sum_probs=157.4
Q ss_pred cccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecc
Q 043470 188 AKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266 (629)
Q Consensus 188 ~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a 266 (629)
...++|||+|||.++++++|+++|++||.|.+|.++++. +++++|||||+|.+.++|.+|++.+++..+.|+.+.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 345789999999999999999999999999999999885 7999999999999999999999999999999999999988
Q ss_pred cchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHH
Q 043470 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEE 346 (629)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~ 346 (629)
....... ....++|||+||++++|+++|+++|+.||.|++|+|+.|++ .++|||||+|.+.++
T Consensus 93 ~~~~~~~----------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 93 QRDPSLR----------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCTHHH----------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHH
T ss_pred ccccccc----------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHH
Confidence 6553321 12346899999999999999999999999999999999864 489999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEeccchHHHHHHH
Q 043470 347 ASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL 379 (629)
Q Consensus 347 A~~A~~~l~~~~~~g~~l~v~~a~~k~~~~~~~ 379 (629)
|.+|++.|||..|+|++|.|.+++++.++....
T Consensus 156 a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 188 (213)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCHHHHHHHH
T ss_pred HHHHHHHhCCCEECCEEEEEEEcCCCcccchhh
Confidence 999999999999999999999999887766543
No 5
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=99.98 E-value=5.7e-33 Score=241.41 Aligned_cols=92 Identities=53% Similarity=0.780 Sum_probs=85.5
Q ss_pred ccccccCCCCHHHHHHHHHhhhhhhhhhcCCCCccchhhhhccCChHHHHHhcCChHHHHHHHHHHHHHHHHHHhccccc
Q 043470 535 MLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVSTQ 614 (629)
Q Consensus 535 ~~~~~l~~~~~~~q~~~~ge~l~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~ 614 (629)
+++++|++++|++||+||||+|||+|++++|++||||||||||||++|||+||+|+|+|++||+||++||++|++++...
T Consensus 53 l~as~La~a~p~eQkq~LGE~LyplV~~~~p~~A~KITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~~~~~ 132 (144)
T 1g9l_A 53 LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQ 132 (144)
T ss_dssp CSHHHHTTCTTTTTTTTTTSSSHHHHHHHTTSCCSSHHHHTTTSSSHHHHHHHHCTTHHHHHHHHHHHHHHTTSSSTTCC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999876667
Q ss_pred cccCCCCccccc
Q 043470 615 EAIHPNYLSAEV 626 (629)
Q Consensus 615 ~~~~~~~~~~~~ 626 (629)
+.+++....++|
T Consensus 133 ~~~~~~~~~~~~ 144 (144)
T 1g9l_A 133 KAVNSATGVPTV 144 (144)
T ss_dssp CCCSSSCSSCCC
T ss_pred hhhccccccCCC
Confidence 777777665543
No 6
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=99.97 E-value=9.8e-33 Score=221.08 Aligned_cols=79 Identities=28% Similarity=0.330 Sum_probs=75.8
Q ss_pred CCCccccccCCCCHHHHHHHHHhhhhhhhhh--cCCCCccchhhhhccCChHHHHHhcCChHHHHHHHHHHHHHHHHHHh
Q 043470 532 KPDMLNGMLAAPSPEQQKQILGERLYPLVEK--HKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEA 609 (629)
Q Consensus 532 ~~~~~~~~l~~~~~~~q~~~~ge~l~~~~~~--~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~ 609 (629)
+.++++++|++++|++||+||||+|||+|++ ++|++||||||||||||++|||+||+|+++|++||+||++||++|++
T Consensus 4 ~~p~~a~~la~~~p~~Qkq~LGE~LyplV~~~~~~pelAgKITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~ 83 (92)
T 1ifw_A 4 GSPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKK 83 (92)
T ss_dssp SCSSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHhcCChHHHHHHHHHHHHHHHHHhhcCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999999 99999999999999999999999999999999999999999999996
Q ss_pred c
Q 043470 610 K 610 (629)
Q Consensus 610 ~ 610 (629)
.
T Consensus 84 ~ 84 (92)
T 1ifw_A 84 E 84 (92)
T ss_dssp S
T ss_pred h
Confidence 3
No 7
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.97 E-value=3.9e-33 Score=219.97 Aligned_cols=77 Identities=51% Similarity=0.793 Sum_probs=74.2
Q ss_pred CccccccCCCCHHHHHHHHHhhhhhhhhhcCCCCccchhhhhccCChHHHHHhcCChHHHHHHHHHHHHHHHHHHhc
Q 043470 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610 (629)
Q Consensus 534 ~~~~~~l~~~~~~~q~~~~ge~l~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~ 610 (629)
.+++++|++++|++||++|||+|||+|++++|++||||||||||||++|||+||+|+|+|++||+||++||++|+++
T Consensus 8 ~~~as~La~~~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~Ell~Lles~e~L~~kv~EA~~vL~~~~~~ 84 (85)
T 2dyd_A 8 GALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQH 84 (85)
T ss_dssp TTSCHHHHCCCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHCHHHHHHHTTCSHHHHHHHHHHHHHHTSCSSC
T ss_pred hhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhhc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999998753
No 8
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=99.97 E-value=2.5e-32 Score=217.69 Aligned_cols=80 Identities=58% Similarity=0.865 Sum_probs=75.6
Q ss_pred CccccccCCCCHHHHHHHHHhhhhhhhhhcCCCCccchhhhhccCChHHHHHhcCChHHHHHHHHHHHHHHHHHHhcccc
Q 043470 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAKVST 613 (629)
Q Consensus 534 ~~~~~~l~~~~~~~q~~~~ge~l~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~ 613 (629)
.+++++||+++|++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|+.||+||++||+.|+.++.+
T Consensus 6 ~l~~s~la~a~p~~Qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~~e~L~~kV~EA~~vL~~~~~~~~~ 85 (88)
T 3kuj_A 6 PLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 85 (88)
T ss_dssp CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cchHHHHHcCCHHHHHHHHHHHhHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999987754
No 9
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=99.97 E-value=7.1e-33 Score=218.49 Aligned_cols=75 Identities=51% Similarity=0.725 Sum_probs=73.1
Q ss_pred CccccccCCCCHHHHHHHHHhhhhhhhhhcCCCCccchhhhhccCChHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 043470 534 DMLNGMLAAPSPEQQKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSE 608 (629)
Q Consensus 534 ~~~~~~l~~~~~~~q~~~~ge~l~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~ 608 (629)
++++++||+++|++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|+
T Consensus 9 ~l~~s~La~a~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~ElL~Lle~~e~L~~kV~EA~~vL~~~~ 83 (85)
T 1nmr_A 9 QNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRHM 83 (85)
T ss_dssp CTTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCCC
T ss_pred ccCHHHHHcCChHHHHHHHHHHHHHHHHHhCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999876
No 10
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-30 Score=241.67 Aligned_cols=164 Identities=25% Similarity=0.498 Sum_probs=155.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCCC
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD 91 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~ 91 (629)
|+|||+|||.++|+++|+++|+.||+|.+|+++++.. ++++|||||+|.+.++|++|++.||+..+.|+.++|.|+...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999964 679999999999999999999999999999999999999888
Q ss_pred CCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcccCcee
Q 043470 92 PDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRI 170 (629)
Q Consensus 92 ~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l 170 (629)
.........+|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|++.++|..+.|+.|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 77777788899999999999999999999999999999999985 89999999999999999999999999999999999
Q ss_pred eeeccc
Q 043470 171 YVGRFI 176 (629)
Q Consensus 171 ~v~~~~ 176 (629)
.|.+..
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 997653
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=4.6e-30 Score=246.98 Aligned_cols=176 Identities=22% Similarity=0.435 Sum_probs=153.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
.|.++...++|||+|||+++||++|+++|+.||.|.+|+|++|..+++++|||||.|.+.++|++||+. ++..+.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 455677889999999999999999999999999999999999999999999999999999999999986 8899999999
Q ss_pred eeeccCCCCCccc----CCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHH
Q 043470 84 RISWSCRDPDARK----SGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIE 158 (629)
Q Consensus 84 ~I~~s~~~~~~~~----s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~ 158 (629)
+|.|+........ ....+|||+|||.++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 9999875543222 234789999999999999999999999999999999997 89999999999999999999998
Q ss_pred HhCCCcccCceeeeecccccCCC
Q 043470 159 NLNGTTVGDKRIYVGRFIKKSDR 181 (629)
Q Consensus 159 ~lng~~l~g~~l~v~~~~~~~~~ 181 (629)
. ++..++|+.|.|.+..++.+.
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp C-SCCEETTEECEEEECC-----
T ss_pred h-CCcEECCEEEEEEecCChhHh
Confidence 6 899999999999988776654
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.1e-30 Score=238.11 Aligned_cols=165 Identities=30% Similarity=0.511 Sum_probs=152.3
Q ss_pred ccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchH
Q 043470 191 TNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKA 270 (629)
Q Consensus 191 ~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~ 270 (629)
++|||+|||.++++++|+++|++||.|.++.+..+.+++++|||||+|.+.++|.+|++.+++..+.|+.|.+.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 47999999999999999999999999999999999989999999999999999999999999999999999999886542
Q ss_pred HHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeC-CCCCeeeEEEEEeCCHHHHHH
Q 043470 271 EREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASK 349 (629)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~-~~g~~kg~~fV~f~~~~~A~~ 349 (629)
. .....+++|||+|||.++|+++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+
T Consensus 81 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 Q----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp C----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred C----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 1 12345679999999999999999999999999999999998 578999999999999999999
Q ss_pred HHHHhCCceeCCeEEEEEeccc
Q 043470 350 AVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 350 A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
|++.|||..++|++|.|.||++
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999864
No 13
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=8.6e-30 Score=238.67 Aligned_cols=163 Identities=29% Similarity=0.493 Sum_probs=152.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
++++|||+|||+++|+++|+++|+.||+|.+|++.++..+++++|||||+|.+.++|++|++.|++..+.|++|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcccC-
Q 043470 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGD- 167 (629)
Q Consensus 90 ~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g- 167 (629)
.... .....+|+|+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|++.++|..+.|
T Consensus 82 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 82 PGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 6543 3445789999999999999999999999999999999988 89999999999999999999999999999977
Q ss_pred -ceeeeec
Q 043470 168 -KRIYVGR 174 (629)
Q Consensus 168 -~~l~v~~ 174 (629)
+.|.|.+
T Consensus 160 ~~~l~V~~ 167 (168)
T 1b7f_A 160 SQPLSVRL 167 (168)
T ss_dssp SSCCEEEE
T ss_pred CeEEEEEe
Confidence 8887754
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.2e-29 Score=237.07 Aligned_cols=162 Identities=30% Similarity=0.544 Sum_probs=151.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
++++|||+|||+++||++|+++|+.||+|.+|+++++..+++++|||||+|.+.++|++|++.||+..+.|++|+|.|+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcccCc
Q 043470 90 RDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDK 168 (629)
Q Consensus 90 ~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~ 168 (629)
... ......+|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|++.+||..+.|+
T Consensus 81 ~~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 81 PSS--ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCC--GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCc--ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 553 33445789999999999999999999999999999999987 899999999999999999999999999999997
Q ss_pred e--eeee
Q 043470 169 R--IYVG 173 (629)
Q Consensus 169 ~--l~v~ 173 (629)
. |.|.
T Consensus 159 ~~~i~v~ 165 (167)
T 1fxl_A 159 TEPITVK 165 (167)
T ss_dssp SSCCEEE
T ss_pred ccceEEE
Confidence 6 5554
No 15
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=4.9e-29 Score=239.76 Aligned_cols=178 Identities=24% Similarity=0.445 Sum_probs=150.6
Q ss_pred CccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEe
Q 043470 186 PAAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAA 264 (629)
Q Consensus 186 ~~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~ 264 (629)
.....++|||+|||.++++++|+++|++||.|.++.++.+. +|.++|||||.|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 34567899999999999999999999999999999999885 689999999999999999999986 8899999999999
Q ss_pred cccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCC
Q 043470 265 RAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSS 343 (629)
Q Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~ 343 (629)
++........ .......++|||+|||+++|+++|+++|+.||.|.+|+++.+. +|.++|||||+|.+
T Consensus 88 ~~~~~~~~~~------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 155 (196)
T 1l3k_A 88 RAVSREDSQR------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155 (196)
T ss_dssp ECCC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cccCcccccc------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECC
Confidence 9876543221 1123356799999999999999999999999999999999986 78999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEeccchHHHHH
Q 043470 344 PEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQA 377 (629)
Q Consensus 344 ~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~~~~~ 377 (629)
.++|.+|+.. ++..|+|+.|.|.++.+++....
T Consensus 156 ~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 156 HDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 9999999986 89999999999999998877643
No 16
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3.7e-29 Score=244.48 Aligned_cols=177 Identities=25% Similarity=0.476 Sum_probs=154.6
Q ss_pred ccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEeccc
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~ 267 (629)
..++|||+|||.++++++|+++|++||.|.++.++.+. +|+++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45789999999999999999999999999999998886 88999999999999999999999999999999999998887
Q ss_pred chHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHH
Q 043470 268 KKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEE 346 (629)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~ 346 (629)
........... ........++|||+||+.++|+++|+++|+.||.|++|+++.+. +|.++|||||+|.+.++
T Consensus 107 ~~~~~~~~~~~-------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 107 NIGQAQPIIDQ-------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CCGGGHHHHHH-------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred Cccccchhhhh-------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 65433221111 11223456899999999999999999999999999999999985 78999999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEeccch
Q 043470 347 ASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 347 A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
|.+|++.|||..|+|+.|.|.++..+
T Consensus 180 A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred HHHHHHHccCCEeCCcEEEEEEecCC
Confidence 99999999999999999999998743
No 17
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3e-29 Score=245.11 Aligned_cols=171 Identities=23% Similarity=0.444 Sum_probs=154.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
.+++|||+|||.++||++|+++|+.||+|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCc---------ccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHH
Q 043470 90 RDPDA---------RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIEN 159 (629)
Q Consensus 90 ~~~~~---------~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~ 159 (629)
..... ......+|||+||+.++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 55321 12345789999999999999999999999999999999986 899999999999999999999999
Q ss_pred hCCCcccCceeeeecccccCC
Q 043470 160 LNGTTVGDKRIYVGRFIKKSD 180 (629)
Q Consensus 160 lng~~l~g~~l~v~~~~~~~~ 180 (629)
+||..+.|+.|.|.+...+..
T Consensus 187 l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCSS
T ss_pred ccCCEeCCcEEEEEEecCCCC
Confidence 999999999999988766543
No 18
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=8.9e-29 Score=231.27 Aligned_cols=162 Identities=31% Similarity=0.574 Sum_probs=150.1
Q ss_pred cccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccc
Q 043470 190 YTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268 (629)
Q Consensus 190 ~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~ 268 (629)
.++|||+|||.++++++|+++|++||.|.++.++.+. +|.++|||||+|.+.++|.+|++.+++..+.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4789999999999999999999999999999999987 899999999999999999999999999999999999998865
Q ss_pred hHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHH
Q 043470 269 KAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEA 347 (629)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A 347 (629)
... ....++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 421 2345789999999999999999999999999999999986 788999999999999999
Q ss_pred HHHHHHhCCceeCCeE--EEEEec
Q 043470 348 SKAVNTFHGYMLHRKP--LYVAIA 369 (629)
Q Consensus 348 ~~A~~~l~~~~~~g~~--l~v~~a 369 (629)
.+|++.|||..++|+. |+|+||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999964 888886
No 19
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=4.5e-29 Score=233.76 Aligned_cols=163 Identities=33% Similarity=0.567 Sum_probs=151.5
Q ss_pred ccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEeccc
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~ 267 (629)
..++|||+|||.++++++|+++|++||.|.++.++.+. +|.++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999998875 78999999999999999999999999999999999999987
Q ss_pred chHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHH
Q 043470 268 KKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEE 346 (629)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~ 346 (629)
.... ....++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++
T Consensus 82 ~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 82 PGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp CCSS------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCcc------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 5421 2346799999999999999999999999999999999987 89999999999999999
Q ss_pred HHHHHHHhCCceeCC--eEEEEEec
Q 043470 347 ASKAVNTFHGYMLHR--KPLYVAIA 369 (629)
Q Consensus 347 A~~A~~~l~~~~~~g--~~l~v~~a 369 (629)
|.+|++.|||..++| ++|+|+||
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999987 99999986
No 20
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=5.1e-29 Score=234.91 Aligned_cols=165 Identities=19% Similarity=0.363 Sum_probs=148.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHhcCCceec---Ceeee
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTG--RSTCYGYVNFLSPHDAIRAIEVKNHTQLH---GKMLR 84 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~--~s~G~AfV~F~~~~~A~~Al~~ln~~~i~---g~~i~ 84 (629)
.+++|||+|||+++||++|+++|+.||+|.+|+++++..++ +++|||||+|.+.++|++|++.||+..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998887 89999999999999999999999998776 67788
Q ss_pred eeccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCc
Q 043470 85 ISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTT 164 (629)
Q Consensus 85 I~~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~ 164 (629)
+.++..... ......+|||+|||.++++++|+++|+.||.|.++++..+.+|.++|||||+|.+.++|.+|++.+||..
T Consensus 82 ~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCC-SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred Ecccccccc-ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 877664432 2335678999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccC---ceeeeecc
Q 043470 165 VGD---KRIYVGRF 175 (629)
Q Consensus 165 l~g---~~l~v~~~ 175 (629)
+.+ +.|.|.++
T Consensus 161 ~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 161 TMEGCSSPMVVKFA 174 (175)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCCCCeEEEec
Confidence 753 88888653
No 21
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=1.5e-29 Score=236.93 Aligned_cols=165 Identities=21% Similarity=0.472 Sum_probs=150.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
+++++|||+|||.++||++|+++|+.||.|.+|++++|..+++++|||||.|.+.++|++|++. ...+.|+.|++.|+
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 3578999999999999999999999999999999999999999999999999999999999984 56899999999988
Q ss_pred CCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcccC
Q 043470 89 CRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGD 167 (629)
Q Consensus 89 ~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g 167 (629)
.... ......+|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|++ +++..+.|
T Consensus 79 ~~~~--~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 79 IPRD--EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CCHH--HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred cchh--hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 6542 22345789999999999999999999999999999999986 89999999999999999999998 89999999
Q ss_pred ceeeeeccccc
Q 043470 168 KRIYVGRFIKK 178 (629)
Q Consensus 168 ~~l~v~~~~~~ 178 (629)
+.|.|.++.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999877553
No 22
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=1e-28 Score=232.80 Aligned_cols=165 Identities=21% Similarity=0.407 Sum_probs=147.0
Q ss_pred ccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCC---CceeEEEEEeCCHHHHHHHHHHhCCCeeC---CeEEE
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENG---TSRGFGFVNFDNPDDARRALEAMNGSVIG---SKVLY 262 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g---~s~g~afV~F~~~e~A~~Av~~l~g~~~~---g~~l~ 262 (629)
..++|||+|||.++++++|+++|++||.|.++.++++..+ +++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 3578999999999999999999999999999999988754 89999999999999999999999998765 56677
Q ss_pred EecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeC
Q 043470 263 AARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFS 342 (629)
Q Consensus 263 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~ 342 (629)
+.++..... .....++|||+|||+++|+++|+++|+.||.|.+++++.+.+|.++|||||+|.
T Consensus 82 ~~~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKN-----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCC-----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred Ecccccccc-----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEEC
Confidence 766643321 123567899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCceeC---CeEEEEEecc
Q 043470 343 SPEEASKAVNTFHGYMLH---RKPLYVAIAQ 370 (629)
Q Consensus 343 ~~~~A~~A~~~l~~~~~~---g~~l~v~~a~ 370 (629)
+.++|.+|++.|||..+. +++|.|+||.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999998776 4999999984
No 23
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=9.4e-29 Score=231.42 Aligned_cols=163 Identities=31% Similarity=0.577 Sum_probs=149.4
Q ss_pred ccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEeccc
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDE-NGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~-~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~ 267 (629)
..++|||+|||.++++++|+++|++||.|.++.++.+. +|+++|||||.|.+.++|.+|++. +..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 35789999999999999999999999999999999884 799999999999999999999984 578999999999887
Q ss_pred chHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHH
Q 043470 268 KKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEE 346 (629)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~ 346 (629)
.+... ...++|||+|||+++|+++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++
T Consensus 80 ~~~~~------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 80 PRDEQ------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp CHHHH------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred chhhc------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 65432 135689999999999999999999999999999999985 79999999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEeccch
Q 043470 347 ASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 347 A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
|.+|++ +++..++|++|.|.|+.+|
T Consensus 142 a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999998 8999999999999999876
No 24
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=7.9e-29 Score=233.98 Aligned_cols=167 Identities=28% Similarity=0.421 Sum_probs=151.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
.++...++|||+|||.++|+++|+++|+.||.|.+ .++++..+++++|||||.|.+.++|++|++ ||+..|.|++|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 46677899999999999999999999999998877 445566788899999999999999999995 9999999999999
Q ss_pred eccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcc
Q 043470 86 SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTV 165 (629)
Q Consensus 86 ~~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l 165 (629)
.|+............+|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.++|..+
T Consensus 86 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 86 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp ECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred ecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 99988776667778899999999999999999999999988765 66889999999999999999999999999999
Q ss_pred cCceeeeeccccc
Q 043470 166 GDKRIYVGRFIKK 178 (629)
Q Consensus 166 ~g~~l~v~~~~~~ 178 (629)
.|+.|.|.+..++
T Consensus 162 ~g~~i~v~~a~~k 174 (175)
T 1fje_B 162 DGRSVSLYYTGEK 174 (175)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEecCCC
Confidence 9999999876543
No 25
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=99.95 E-value=2.2e-29 Score=186.58 Aligned_cols=61 Identities=48% Similarity=0.782 Sum_probs=59.6
Q ss_pred HHHHHHhhhhhhhhhcCCCCccchhhhhccCChHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 043470 548 QKQILGERLYPLVEKHKPDLVAKITGMLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSE 608 (629)
Q Consensus 548 q~~~~ge~l~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~ 608 (629)
||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|.
T Consensus 1 qkq~LGe~Lyp~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~~~ 61 (61)
T 1i2t_A 1 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAHG 61 (61)
T ss_dssp CHHHHHHHHHHHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhCcccccchhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999999999999999999999999999999873
No 26
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=1.5e-28 Score=236.72 Aligned_cols=164 Identities=21% Similarity=0.413 Sum_probs=144.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCce
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEF----K-------SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~----G-------~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~ 77 (629)
+.+++|||+|||+++||++|+++|+.| | .|.++++. +++|||||+|.+.++|++|+ .||+..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 467999999999999999999999999 4 55665553 46799999999999999999 799999
Q ss_pred ecCeeeeeeccCCCCCc------------------ccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCC
Q 043470 78 LHGKMLRISWSCRDPDA------------------RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGK 138 (629)
Q Consensus 78 i~g~~i~I~~s~~~~~~------------------~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~ 138 (629)
|.|++|+|.|+...... ......+|||+|||.++++++|+++|+.||.|.+|++..+. +|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 99999999998754211 11445789999999999999999999999999999999997 899
Q ss_pred ccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccccC
Q 043470 139 SKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKS 179 (629)
Q Consensus 139 skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~ 179 (629)
++|||||+|.+.++|.+|++.++|..+.|+.|.|.+..++.
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999998876543
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1e-27 Score=231.92 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=137.3
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 9 TTPASLYVGDLH-PDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 9 ~~~~sLyV~nLp-~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
.++++|||+||| .++|+++|+++|+.||.|.+|+|.++ ++|||||+|.+.++|++|++.||+..+.|++|+|.|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 79999999999999999999999876 368999999999999999999999999999999999
Q ss_pred cCCCCCc-----------------------c------------cCCcccccccccchhhhhHHHHHHHccCCCe--eEeE
Q 043470 88 SCRDPDA-----------------------R------------KSGVANLFVKNLIESIDNVRLQEMFQNFGNI--ISCK 130 (629)
Q Consensus 88 s~~~~~~-----------------------~------------~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I--~s~k 130 (629)
+...... + .....+|||+|||.++|+++|+++|+.||.| .+++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 8642110 0 0123469999999999999999999999999 8999
Q ss_pred EeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCce
Q 043470 131 VATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKR 169 (629)
Q Consensus 131 v~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~ 169 (629)
+..+. +.++|+|||+|++.++|.+|+..|||..+.++.
T Consensus 157 ~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 157 VFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp ECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 88876 556799999999999999999999999998874
No 28
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.3e-27 Score=242.05 Aligned_cols=172 Identities=23% Similarity=0.319 Sum_probs=159.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
...++|||+|||.++|+++|+++|+.||.|.+|++++|..+++++|||||.|.+.++|.+|++.||+..+.|++|+|.|+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-cccCCcccccccccchhh-hhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCccc
Q 043470 89 CRDPD-ARKSGVANLFVKNLIESI-DNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG 166 (629)
Q Consensus 89 ~~~~~-~~~s~~~~v~V~nLp~~i-t~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~ 166 (629)
..... .......+|||+|||.++ ++++|+++|+.||.|.++++..+.+|.++|+|||+|.+.++|.+|++.+||..+.
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 86542 233456789999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecccccCC
Q 043470 167 DKRIYVGRFIKKSD 180 (629)
Q Consensus 167 g~~l~v~~~~~~~~ 180 (629)
|+.|.|.+..++..
T Consensus 253 g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 253 GSHLRVSFCAPGPP 266 (284)
T ss_dssp TEECEEEECCSSSC
T ss_pred CeEEEEEEecCCCc
Confidence 99999988766544
No 29
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=2.1e-27 Score=223.32 Aligned_cols=158 Identities=23% Similarity=0.452 Sum_probs=144.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCce
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEF----K-------SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~----G-------~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~ 77 (629)
+++++|||+|||+++||++|+++|+.| | .|.++++.+ ++|||||+|.+.++|++|+ .||+..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 467899999999999999999999999 6 777777754 4789999999999999999 899999
Q ss_pred ecCeeeeeeccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHH
Q 043470 78 LHGKMLRISWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAA 156 (629)
Q Consensus 78 i~g~~i~I~~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~A 156 (629)
+.|++|+|.|+.... ......+|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|
T Consensus 75 ~~g~~i~v~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQ--PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp ETTEECEEECCSSCC--CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred ecCceeeecCCcccC--CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 999999999987553 23446899999999999999999999999999999999996 999999999999999999999
Q ss_pred HHHhCCCcccCceeeeecc
Q 043470 157 IENLNGTTVGDKRIYVGRF 175 (629)
Q Consensus 157 i~~lng~~l~g~~l~v~~~ 175 (629)
++.+||..+.|+.|.|.++
T Consensus 153 ~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 153 IAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHTTCEETTEECEEEEC
T ss_pred HHHcCCCEECCeEEEEEeC
Confidence 9999999999999999764
No 30
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=2.5e-27 Score=222.86 Aligned_cols=158 Identities=20% Similarity=0.437 Sum_probs=142.8
Q ss_pred ccccccccCCCCCcCHHHHHHHhccc----C-------CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeC
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKF----G-------KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG 257 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~----G-------~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~ 257 (629)
..++|||+|||.++++++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 45789999999999999999999999 6 66666665 45899999999999999999 89999999
Q ss_pred CeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeE
Q 043470 258 SKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGF 336 (629)
Q Consensus 258 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~ 336 (629)
|+.|.|.++..... ....++|||+|||+++|+++|+++|+.||.|.+++++.+. +|.++||
T Consensus 77 g~~i~v~~~~~~~~------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp TEECEEECCSSCCC------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred CceeeecCCcccCC------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 99999988754311 1236789999999999999999999999999999999995 8999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 337 GFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 337 ~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
|||+|.+.++|.+|++.|||..++|++|.|.||.
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999999999999973
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=5.1e-28 Score=228.37 Aligned_cols=165 Identities=22% Similarity=0.364 Sum_probs=145.9
Q ss_pred ccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecc
Q 043470 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266 (629)
Q Consensus 187 ~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a 266 (629)
....++|||+|||.++++++|+++|+.||.+..+.+....+|.++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 34578999999999999999999999999876644444457889999999999999999999 59999999999999998
Q ss_pred cchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHH
Q 043470 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEE 346 (629)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~ 346 (629)
..+.. ......++|||+|||.++|+++|+++|+.||.|..+ +.+|.++|||||+|.+.++
T Consensus 89 ~~~~~----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 89 KGRDS----------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp CCSSC----------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHH
T ss_pred CCccc----------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHH
Confidence 76421 112346799999999999999999999999988876 6678999999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEeccch
Q 043470 347 ASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 347 A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
|.+|++.|||..++|+.|.|.|+.+|
T Consensus 149 A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 149 AEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999865
No 32
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=6.6e-27 Score=238.44 Aligned_cols=178 Identities=20% Similarity=0.375 Sum_probs=148.2
Q ss_pred cccccccccCCCCCcCHHHHH----HHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEE
Q 043470 188 AKYTNLFMKNLDSDVTEEHLV----EKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYA 263 (629)
Q Consensus 188 ~~~~~v~V~nLp~~~t~e~L~----~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v 263 (629)
...++|||+||+.++++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.+|+..+.|+.|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 456899999999999999976 8999999999998886 6789999999999999999999999999999999999
Q ss_pred ecccchHHHHHHHhhhhHHHH-----------------H-----------------------------------------
Q 043470 264 ARAQKKAEREQILRHQFEEKR-----------------K----------------------------------------- 285 (629)
Q Consensus 264 ~~a~~~~~~~~~~~~~~~~~~-----------------~----------------------------------------- 285 (629)
.++..+..........+.... .
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998665432111000000000 0
Q ss_pred -----------------------------------HhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC
Q 043470 286 -----------------------------------ERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK 330 (629)
Q Consensus 286 -----------------------------------~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~ 330 (629)
.......+++|||+||++++|+++|+++|+.||.|.+|+++.++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 00112245789999999999999999999999999999999763
Q ss_pred CCeeeEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEeccc
Q 043470 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLH-RKPLYVAIAQR 371 (629)
Q Consensus 331 g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~ 371 (629)
+|||||+|.+.++|.+|++.|||..|+ |+.|+|.|+++
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 589999999999999999999999999 99999999863
No 33
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=9.7e-28 Score=232.17 Aligned_cols=176 Identities=16% Similarity=0.265 Sum_probs=142.8
Q ss_pred ccccccccCCC-CCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEeccc
Q 043470 189 KYTNLFMKNLD-SDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQ 267 (629)
Q Consensus 189 ~~~~v~V~nLp-~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~ 267 (629)
..++|||+||+ .++++++|+++|++||.|.++.++++ .+|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 45789999999 89999999999999999999999874 47899999999999999999999999999999999875
Q ss_pred chHHHHHH---Hh------hhhHHH----------HHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCe--EEEEEe
Q 043470 268 KKAEREQI---LR------HQFEEK----------RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTI--TSAKVM 326 (629)
Q Consensus 268 ~~~~~~~~---~~------~~~~~~----------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v--~~~~v~ 326 (629)
.+...... +. ..+... ........++++|||+|||+++|+++|+++|+.||.| .+++++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 33210000 00 000000 0000012346789999999999999999999999999 999999
Q ss_pred eCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe----EEEEEec
Q 043470 327 RDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK----PLYVAIA 369 (629)
Q Consensus 327 ~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~----~l~v~~a 369 (629)
.+. |.++|||||+|.+.++|.+|+..|||..|+|+ ++.|+|+
T Consensus 159 ~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 886 56679999999999999999999999999876 6777775
No 34
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=7.7e-27 Score=237.95 Aligned_cols=163 Identities=21% Similarity=0.365 Sum_probs=145.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCe
Q 043470 6 PTATTPASLYVGDLHPDVTDGELF----DAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGK 81 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~----~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~ 81 (629)
++.+++++|||+|||.++||++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|++|++.||+..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 466779999999999999999955 9999999999999986 677999999999999999999999999999999
Q ss_pred eeeeeccCCCCCc-------------------------------------------------------------------
Q 043470 82 MLRISWSCRDPDA------------------------------------------------------------------- 94 (629)
Q Consensus 82 ~i~I~~s~~~~~~------------------------------------------------------------------- 94 (629)
.|+|.|+..+...
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 9999998754320
Q ss_pred ------------------------------------------ccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEe
Q 043470 95 ------------------------------------------RKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVA 132 (629)
Q Consensus 95 ------------------------------------------~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~ 132 (629)
......+|||+||+.++++++|+++|+.||.|.+|++.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 11124569999999999999999999999999999999
Q ss_pred eCCCCCccceEEEEEcCHHHHHHHHHHhCCCccc-Cceeeeecc
Q 043470 133 TSEDGKSKGHGFVQFETEESANAAIENLNGTTVG-DKRIYVGRF 175 (629)
Q Consensus 133 ~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~-g~~l~v~~~ 175 (629)
.+. +|||||+|.+.++|.+|++.+||..+. |+.|.|.+.
T Consensus 241 ~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 241 PGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred cCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 653 689999999999999999999999999 999999765
No 35
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=6.8e-27 Score=230.84 Aligned_cols=167 Identities=22% Similarity=0.281 Sum_probs=147.0
Q ss_pred CCCCCCCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC
Q 043470 2 AVVPPTATTPASLYVGDLHP-DVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG 80 (629)
Q Consensus 2 ~~~p~~~~~~~sLyV~nLp~-~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g 80 (629)
+.++.+..++++|||+|||+ ++|+++|+++|+.||.|.+|++++|. +|||||+|.+.++|++|++.||+..|.|
T Consensus 25 ~~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 25 AIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp CCGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 33445677889999999999 99999999999999999999999875 6899999999999999999999999999
Q ss_pred eeeeeeccCCCCCc---------------------------------ccCCcccccccccchhhhhHHHHHHHccCC-Ce
Q 043470 81 KMLRISWSCRDPDA---------------------------------RKSGVANLFVKNLIESIDNVRLQEMFQNFG-NI 126 (629)
Q Consensus 81 ~~i~I~~s~~~~~~---------------------------------~~s~~~~v~V~nLp~~it~~~L~~~fs~fG-~I 126 (629)
+.|+|.|+...... ......+|||+|||.++++++|+++|+.|| .|
T Consensus 100 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i 179 (229)
T 2adc_A 100 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 179 (229)
T ss_dssp SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCE
T ss_pred eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCe
Confidence 99999998743100 011246799999999999999999999999 99
Q ss_pred eEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCccc-Cceeeeecccc
Q 043470 127 ISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVG-DKRIYVGRFIK 177 (629)
Q Consensus 127 ~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~-g~~l~v~~~~~ 177 (629)
.++++..+ ++|||||+|.+.++|.+|++.++|..+. |+.|.|.+..+
T Consensus 180 ~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 180 KGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred eEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99999754 5789999999999999999999999999 99999987644
No 36
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=4.7e-26 Score=219.21 Aligned_cols=179 Identities=18% Similarity=0.386 Sum_probs=145.9
Q ss_pred ccccccccCCCCCcCHHHHHHHhccc----C-------CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeC
Q 043470 189 KYTNLFMKNLDSDVTEEHLVEKFSKF----G-------KIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIG 257 (629)
Q Consensus 189 ~~~~v~V~nLp~~~t~e~L~~~F~~~----G-------~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~ 257 (629)
..++|||+|||.++++++|+++|++| | .|.++.+ ++++|||||+|.+.++|.+|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 35789999999999999999999999 4 5555555 366899999999999999999 89999999
Q ss_pred CeEEEEecccchHHHHHHHhhh--hHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCee
Q 043470 258 SKVLYAARAQKKAEREQILRHQ--FEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINK 334 (629)
Q Consensus 258 g~~l~v~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~k 334 (629)
|+.|.|.++............. ..............++|||+|||+++++++|+++|+.||.|.+|+++.+. +|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 9999999886541110000000 00000001112456899999999999999999999999999999999996 89999
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccchH
Q 043470 335 GFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373 (629)
Q Consensus 335 g~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~ 373 (629)
|||||+|.+.++|.+|++.|||..++|+.|.|.++.++.
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999999999999999998654
No 37
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=6.5e-26 Score=228.35 Aligned_cols=157 Identities=32% Similarity=0.525 Sum_probs=145.0
Q ss_pred ccccccccccCCCCCcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecc
Q 043470 187 AAKYTNLFMKNLDSDVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266 (629)
Q Consensus 187 ~~~~~~v~V~nLp~~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a 266 (629)
....++|||+|||.++|+++|+++|++||.|.++.+.+ ++|||||.|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45668899999999999999999999999999999864 4789999999999999999999999999999999987
Q ss_pred cchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHH
Q 043470 267 QKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEE 346 (629)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~ 346 (629)
.. +++|||+|||..+|+++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++
T Consensus 94 ~~------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 94 TH------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 149 (261)
T ss_dssp CC------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHH
T ss_pred cc------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHH
Confidence 53 568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CceeC---CeEEEEEeccch
Q 043470 347 ASKAVNTFH-GYMLH---RKPLYVAIAQRK 372 (629)
Q Consensus 347 A~~A~~~l~-~~~~~---g~~l~v~~a~~k 372 (629)
|.+|+..|| +..+. +++|.|.++...
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999999995 55554 999999999755
No 38
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=3.7e-26 Score=230.13 Aligned_cols=159 Identities=26% Similarity=0.413 Sum_probs=144.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
....++|||+|||+++|+++|+++|+.||.|.+|++.+ ++|||||.|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34557999999999999999999999999999999975 468999999999999999999999999999999999
Q ss_pred cCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhC-CCccc
Q 043470 88 SCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLN-GTTVG 166 (629)
Q Consensus 88 s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~ln-g~~l~ 166 (629)
+.. ..+|||+|||.++++++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.++ +..+.
T Consensus 93 a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 164 (261)
T 3sde_A 93 ATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLL 164 (261)
T ss_dssp CCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEES
T ss_pred ccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEe
Confidence 874 368999999999999999999999999999999999999999999999999999999999994 55544
Q ss_pred ---CceeeeecccccCC
Q 043470 167 ---DKRIYVGRFIKKSD 180 (629)
Q Consensus 167 ---g~~l~v~~~~~~~~ 180 (629)
++.+.|.+.....+
T Consensus 165 ~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 165 TTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp SSSCCBCEEEECCCEES
T ss_pred cCCCceEEEeeccccCc
Confidence 88888887765443
No 39
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=2.4e-26 Score=235.47 Aligned_cols=167 Identities=23% Similarity=0.343 Sum_probs=146.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
..++|||+|||.++|+++|+++|+.|| .|.+|+++++.. ++++|||||.|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999865 779999999999999999999999999999999999998
Q ss_pred CCCCCc-----ccCCcccccccccchh-hhhHHHHHHHccCCCeeEeEEeeCCC--CCccceEEEEEcCHHHHHHHHHHh
Q 043470 89 CRDPDA-----RKSGVANLFVKNLIES-IDNVRLQEMFQNFGNIISCKVATSED--GKSKGHGFVQFETEESANAAIENL 160 (629)
Q Consensus 89 ~~~~~~-----~~s~~~~v~V~nLp~~-it~~~L~~~fs~fG~I~s~kv~~d~~--g~skg~afV~f~~~e~A~~Ai~~l 160 (629)
...... ......+|||+|||.+ +++++|+++|+.||.|.+|++..+.+ |.++|||||+|.+.++|.+|+ .+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 755432 2335678999999999 99999999999999999999999887 999999999999999999999 99
Q ss_pred CCCcccCceeeeeccccc
Q 043470 161 NGTTVGDKRIYVGRFIKK 178 (629)
Q Consensus 161 ng~~l~g~~l~v~~~~~~ 178 (629)
||..+.|+.|.|.+..++
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999887653
No 40
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=3.6e-26 Score=220.29 Aligned_cols=159 Identities=23% Similarity=0.292 Sum_probs=142.1
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 10 TPASLYVGDLHP-DVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 10 ~~~sLyV~nLp~-~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
.+++|||+|||+ ++|+++|+++|+.||.|.+|+++++. +|||||+|.+.++|++|++.||+..+.|++|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999999874 679999999999999999999999999999999998
Q ss_pred CCCCCc---------------------------------ccCCcccccccccchhhhhHHHHHHHccCC-CeeEeEEeeC
Q 043470 89 CRDPDA---------------------------------RKSGVANLFVKNLIESIDNVRLQEMFQNFG-NIISCKVATS 134 (629)
Q Consensus 89 ~~~~~~---------------------------------~~s~~~~v~V~nLp~~it~~~L~~~fs~fG-~I~s~kv~~d 134 (629)
...... ......+|||+|||.++++++|+++|+.|| .|.++++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 754210 012256799999999999999999999999 9999999764
Q ss_pred CCCCccceEEEEEcCHHHHHHHHHHhCCCccc-Cceeeeecccc
Q 043470 135 EDGKSKGHGFVQFETEESANAAIENLNGTTVG-DKRIYVGRFIK 177 (629)
Q Consensus 135 ~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~-g~~l~v~~~~~ 177 (629)
++|+|||+|.+.++|.+|++.+||..+. |+.|.|.+..+
T Consensus 157 ----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 4789999999999999999999999999 99999977643
No 41
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=1.5e-26 Score=228.34 Aligned_cols=177 Identities=21% Similarity=0.333 Sum_probs=146.0
Q ss_pred cccccccccCCCC-CcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecc
Q 043470 188 AKYTNLFMKNLDS-DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARA 266 (629)
Q Consensus 188 ~~~~~v~V~nLp~-~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a 266 (629)
...++|||+|||. ++++++|+++|++||.|.++.++.+. +|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4568999999999 99999999999999999999999864 789999999999999999999999999999999988
Q ss_pred cchHHH-------HHHHhhhhHHH----------HHHhhhhcccceeeeecCCCCCCHHHHHHHHhcCC-CeEEEEEeeC
Q 043470 267 QKKAER-------EQILRHQFEEK----------RKERILKYKGSNVYVKNIDDDVTDEELKAHFSQCG-TITSAKVMRD 328 (629)
Q Consensus 267 ~~~~~~-------~~~~~~~~~~~----------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~~~v~~~ 328 (629)
...... .......+... .........+++|||+||++++++++|+++|+.|| .|.+|+++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 187 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 187 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC
Confidence 643110 00000000000 00001123468899999999999999999999999 9999999764
Q ss_pred CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEeccch
Q 043470 329 EKGINKGFGFVCFSSPEEASKAVNTFHGYMLH-RKPLYVAIAQRK 372 (629)
Q Consensus 329 ~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~k 372 (629)
++|||||+|.+.++|.+|++.|||..++ |++|+|.|++++
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 4789999999999999999999999999 999999999764
No 42
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=1.1e-25 Score=216.89 Aligned_cols=175 Identities=20% Similarity=0.319 Sum_probs=144.1
Q ss_pred cccccccCCCC-CcCHHHHHHHhcccCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccc
Q 043470 190 YTNLFMKNLDS-DVTEEHLVEKFSKFGKIASLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQK 268 (629)
Q Consensus 190 ~~~v~V~nLp~-~~t~e~L~~~F~~~G~v~~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~ 268 (629)
.++|||+|||. ++++++|+++|++||.|.++.+..+. +|||||+|.+.++|.+|++.+++..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 47899999999 99999999999999999999998764 78999999999999999999999999999999998864
Q ss_pred hHHHHHH-------HhhhhHHHHHH----------hhhhcccceeeeecCCCCCCHHHHHHHHhcCC-CeEEEEEeeCCC
Q 043470 269 KAEREQI-------LRHQFEEKRKE----------RILKYKGSNVYVKNIDDDVTDEELKAHFSQCG-TITSAKVMRDEK 330 (629)
Q Consensus 269 ~~~~~~~-------~~~~~~~~~~~----------~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~~~v~~~~~ 330 (629)
....... ....+...... ......+++|||+|||+++++++|+++|+.|| .|.+|+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--
Confidence 3210000 00000000000 00112478899999999999999999999999 9999999875
Q ss_pred CCeeeEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEeccch
Q 043470 331 GINKGFGFVCFSSPEEASKAVNTFHGYMLH-RKPLYVAIAQRK 372 (629)
Q Consensus 331 g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~k 372 (629)
.+|||||+|.+.++|.+|+..|||..++ |++|.|.|++++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3789999999999999999999999999 999999999754
No 43
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=1.8e-20 Score=163.81 Aligned_cols=104 Identities=25% Similarity=0.420 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
.+.+|||+|||+++||++|+++|+.||.|.+|+|++|. ++++|||||.|.+.++|++|++.||+..|.|+.|+|.|+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999995 4589999999999999999999999999999999999987
Q ss_pred CCCC------cccCCcccccccccchhhhhHH
Q 043470 90 RDPD------ARKSGVANLFVKNLIESIDNVR 115 (629)
Q Consensus 90 ~~~~------~~~s~~~~v~V~nLp~~it~~~ 115 (629)
.... .+.....+|||+||++++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 5432 2223346899999999998764
No 44
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=1.2e-20 Score=174.91 Aligned_cols=148 Identities=16% Similarity=0.202 Sum_probs=110.9
Q ss_pred EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeee
Q 043470 219 SLLIARDENGTSRGFGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYV 298 (629)
Q Consensus 219 ~~~v~~~~~g~s~g~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 298 (629)
++.++.+.. +++||+||+|.+.++|.+|++.+++....+..+.+......... ................++|||
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV-----TEGSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE-----ECCCCCSSCCCCCCBCCEEEE
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc-----cccccccccccCCCCCCEEEE
Confidence 345555544 78999999999999999999887754332222222211110000 000000001112345689999
Q ss_pred ecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 299 KNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 299 ~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
+|||+++|+++|+++|+.||.|.+|+++.|. +|.++|||||+|.+.++|.+|++.|||..|+|++|+|.+++.+
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 9999999999999999999999999999985 7999999999999999999999999999999999999999765
No 45
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=154.11 Aligned_cols=83 Identities=35% Similarity=0.674 Sum_probs=78.5
Q ss_pred hhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 289 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
..+++++|||+|||.++|+++|+++|++||.|.+|++++|+ +|.++|||||+|.+.++|.+|++.|||..++|++|+|.
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678999999999999999999999999999999999986 69999999999999999999999999999999999999
Q ss_pred eccc
Q 043470 368 IAQR 371 (629)
Q Consensus 368 ~a~~ 371 (629)
||++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9974
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=152.15 Aligned_cols=81 Identities=31% Similarity=0.502 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
..+++|||+|||.++||++|+++|+.||+|.+|+|++|+.|++++|||||+|.+.++|++|++.||+..|.|++|+|.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 043470 89 C 89 (629)
Q Consensus 89 ~ 89 (629)
+
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 5
No 47
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=149.92 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=82.2
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
.+.++|||+||++++++++|+++|++||.|.+|+|+.|+ +|++||||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999999997 4999999999999999999999999999999999999999
Q ss_pred cchHHHHHHH
Q 043470 370 QRKEDRQAHL 379 (629)
Q Consensus 370 ~~k~~~~~~~ 379 (629)
..+..+....
T Consensus 84 ~~~~~~~~~~ 93 (110)
T 3s8s_A 84 IKGQQRMKYY 93 (110)
T ss_dssp STTHHHHHHH
T ss_pred CCCcHHHHHH
Confidence 8877765443
No 48
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=8.5e-19 Score=162.30 Aligned_cols=139 Identities=13% Similarity=0.193 Sum_probs=112.4
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceec-------CeeeeeeccCC----CCCcccCCcccccccccc
Q 043470 40 SVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLH-------GKMLRISWSCR----DPDARKSGVANLFVKNLI 108 (629)
Q Consensus 40 si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~-------g~~i~I~~s~~----~~~~~~s~~~~v~V~nLp 108 (629)
++.|.++.. +++|||||+|.+.++|++|++.+++.... +......+... ..........+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 577888755 58999999999999999999887753222 22222221111 112233446899999999
Q ss_pred hhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccccCC
Q 043470 109 ESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKKSD 180 (629)
Q Consensus 109 ~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~ 180 (629)
.++++++|+++|+.||.|.+|++..|. +|.++|||||+|.+.++|.+|++.+||..+.|+.|.|.+......
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999999999999999999986 899999999999999999999999999999999999998776543
No 49
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=3.1e-19 Score=163.76 Aligned_cols=138 Identities=22% Similarity=0.266 Sum_probs=112.3
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHh-CCCeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCC
Q 043470 228 GTSRGFGFVNFDNPDDARRALEAM-NGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVT 306 (629)
Q Consensus 228 g~s~g~afV~F~~~e~A~~Av~~l-~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 306 (629)
.+.+|+++++|.+.++|.+|++.+ |+..++| .+.+..+.......... ...............++|||+|||+++|
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS--HHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS--SSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc--ccccccccccCCCCCCEEEEeCCCCCCC
Confidence 367899999999999999999999 9999999 99998775431100000 0000000111234568999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 307 DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 307 ~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|++.|||..++|++|+|.|++.+
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999987 6899999999999999999999999999999999999865
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=148.91 Aligned_cols=84 Identities=14% Similarity=0.185 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
+.+.++|||+|||+++||++|+++|++||.|.+|+|++|..|++++|||||.|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 043470 88 SCRD 91 (629)
Q Consensus 88 s~~~ 91 (629)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8644
No 51
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=7.1e-19 Score=146.70 Aligned_cols=83 Identities=18% Similarity=0.355 Sum_probs=77.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcC-CceecCeeeeeecc
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKN-HTQLHGKMLRISWS 88 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln-~~~i~g~~i~I~~s 88 (629)
+++|||+|||+++||++|+++|+.|| .|.+|+|++|+.|++++|||||+|.+.++|++||+.++ +..|.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999999874 56899999999999
Q ss_pred CCCCC
Q 043470 89 CRDPD 93 (629)
Q Consensus 89 ~~~~~ 93 (629)
...+.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86543
No 52
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=8.2e-19 Score=153.22 Aligned_cols=108 Identities=46% Similarity=0.809 Sum_probs=75.8
Q ss_pred CcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeecccc
Q 043470 98 GVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIK 177 (629)
Q Consensus 98 ~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~ 177 (629)
+.++|||+|||.++++++|+++|+.||.|.+|+|..+.. .++|||||+|++.++|.+|++.+++..+.|+.|.|.++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 457899999999999999999999999999999999874 4899999999999999999999999999999999998877
Q ss_pred cCCCC--CCCCccccccccccCCCCCcCHHH
Q 043470 178 KSDRV--LPSPAAKYTNLFMKNLDSDVTEEH 206 (629)
Q Consensus 178 ~~~~~--~~~~~~~~~~v~V~nLp~~~t~e~ 206 (629)
+..+. ........++|||+||++++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 66543 233445678999999999998864
No 53
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=140.39 Aligned_cols=83 Identities=35% Similarity=0.657 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
.+.++|||+|||.++|+++|+++|+.||.|.+|++.+|..+++++|||||+|.+.++|++|++.||+..+.|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 043470 89 CRD 91 (629)
Q Consensus 89 ~~~ 91 (629)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=140.67 Aligned_cols=87 Identities=33% Similarity=0.547 Sum_probs=81.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
+.++++|||+|||.++|+++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 043470 88 SCRDPDA 94 (629)
Q Consensus 88 s~~~~~~ 94 (629)
+......
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9866543
No 55
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=143.59 Aligned_cols=91 Identities=29% Similarity=0.455 Sum_probs=84.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
.+....+.++|||+|||.++|+++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCc
Q 043470 84 RISWSCRDPDA 94 (629)
Q Consensus 84 ~I~~s~~~~~~ 94 (629)
+|.|+......
T Consensus 88 ~v~~a~~~~~~ 98 (105)
T 1x5u_A 88 RVNKASAHNKN 98 (105)
T ss_dssp EEEETTTTSCC
T ss_pred EEEECCCCCcC
Confidence 99999876543
No 56
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=141.85 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=81.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCC
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLAS--------VRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH 75 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~s--------i~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~ 75 (629)
.++++...++|||+|||.++|+++|+++|+.||.|.+ |++.+|+.+++++|||||+|.+.++|++|++.||+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 4557778899999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ceecCeeeeeeccC
Q 043470 76 TQLHGKMLRISWSC 89 (629)
Q Consensus 76 ~~i~g~~i~I~~s~ 89 (629)
..|.|+.|+|.|++
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999874
No 57
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=144.17 Aligned_cols=83 Identities=17% Similarity=0.383 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC--eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc----eecC
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKS--LASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT----QLHG 80 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~--V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~----~i~g 80 (629)
....-.||||+|||+++||++|+++|++||. |.+|++++|+.|++++|||||+|.+.++|++|++.||+. .|.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3445679999999999999999999999994 679999999999999999999999999999999999987 4899
Q ss_pred eeeeeeccC
Q 043470 81 KMLRISWSC 89 (629)
Q Consensus 81 ~~i~I~~s~ 89 (629)
++|+|.|++
T Consensus 85 r~i~V~~Ak 93 (95)
T 2lkz_A 85 KTIGVDFAK 93 (95)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEcc
Confidence 999999986
No 58
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=7.7e-18 Score=138.46 Aligned_cols=83 Identities=31% Similarity=0.496 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...+.++|||+|||.++|+++|+++|+.||.|.+|++.+|..+++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 043470 87 WSC 89 (629)
Q Consensus 87 ~s~ 89 (629)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 59
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=2.8e-18 Score=168.37 Aligned_cols=85 Identities=25% Similarity=0.309 Sum_probs=78.8
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCC--CeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCG--TITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
..++|||+||++++|+++|+++|+.|| .|++|+|+.|+ +|++||||||+|.+.++|.+||+.||+..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 99999999995 899999999999999999999999999999999999999
Q ss_pred ccchHHHH
Q 043470 369 AQRKEDRQ 376 (629)
Q Consensus 369 a~~k~~~~ 376 (629)
++++....
T Consensus 147 a~~~~~~~ 154 (229)
T 3q2s_C 147 VNKQFLSQ 154 (229)
T ss_dssp CCHHHHHH
T ss_pred CCCCccch
Confidence 98776544
No 60
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=141.03 Aligned_cols=88 Identities=23% Similarity=0.382 Sum_probs=82.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...++++|||+|||.++|+++|+++|+.||+|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccCCCCCc
Q 043470 87 WSCRDPDA 94 (629)
Q Consensus 87 ~s~~~~~~ 94 (629)
|+......
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99876543
No 61
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=140.22 Aligned_cols=89 Identities=16% Similarity=0.349 Sum_probs=82.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
.++..+.++|||+|||.++|+++|+++|+.||.|.+|+|++|..+++++|||||+|.+.++|++|++ ||+..|.|++|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 4566778999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred eeccCCCCCc
Q 043470 85 ISWSCRDPDA 94 (629)
Q Consensus 85 I~~s~~~~~~ 94 (629)
|.|+......
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999866443
No 62
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=1.6e-17 Score=135.87 Aligned_cols=81 Identities=40% Similarity=0.624 Sum_probs=77.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCC
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR 90 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~ 90 (629)
+.+|||+|||.++|+++|+++|+.||+|.+|++.+|..+++++|||||.|.+.++|++|++.||+..+.|++|+|.|+..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 043470 91 D 91 (629)
Q Consensus 91 ~ 91 (629)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 63
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=2.7e-17 Score=143.56 Aligned_cols=92 Identities=35% Similarity=0.640 Sum_probs=84.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
..+..+.++|||+|||.++|+++|+++|+.||.|.+|+|++|..+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCccc
Q 043470 85 ISWSCRDPDARK 96 (629)
Q Consensus 85 I~~s~~~~~~~~ 96 (629)
|.|+...+....
T Consensus 89 V~~a~~~~~~~~ 100 (115)
T 2dgo_A 89 TNWATRKPPAPK 100 (115)
T ss_dssp EEESSCCCCCSC
T ss_pred EEEccCCCCCCc
Confidence 999987654433
No 64
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=143.27 Aligned_cols=87 Identities=31% Similarity=0.530 Sum_probs=82.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
+....++++|||+|||.++|+++|+++|+.||+|.+|+++++..+++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44666778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 043470 85 ISWSCRD 91 (629)
Q Consensus 85 I~~s~~~ 91 (629)
|.|+...
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9998754
No 65
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=1.8e-17 Score=135.54 Aligned_cols=81 Identities=32% Similarity=0.605 Sum_probs=76.9
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~-~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
+++|||+|||.++++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..++|++|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999998 4789999999999999999999999999999999999999987
Q ss_pred hH
Q 043470 372 KE 373 (629)
Q Consensus 372 k~ 373 (629)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 66
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=141.80 Aligned_cols=88 Identities=26% Similarity=0.445 Sum_probs=82.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
....+.++|||+|||.++|+++|+++|+.||+|.+|+|++|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 35667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 043470 86 SWSCRDPD 93 (629)
Q Consensus 86 ~~s~~~~~ 93 (629)
.|+.....
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99986643
No 67
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=8.1e-18 Score=146.89 Aligned_cols=106 Identities=16% Similarity=0.296 Sum_probs=94.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
++.++++|||+|||.++|+++|+++|+.||.|.+|++.++. +++|||||.|.+.++|++|++.||+..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999764 468999999999999999999999999999999999
Q ss_pred ccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCC
Q 043470 87 WSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGN 125 (629)
Q Consensus 87 ~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~ 125 (629)
|+...... ++++...++++|.++|+.||-
T Consensus 81 ~a~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh----------hhhhHhHhHHHHHHHHHHhCC
Confidence 98744322 678899999999999999983
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=2.1e-17 Score=144.24 Aligned_cols=87 Identities=28% Similarity=0.440 Sum_probs=81.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...+.++|||+|||.++|+++|+++|+.||.|.+|+|++|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 043470 87 WSCRDPD 93 (629)
Q Consensus 87 ~s~~~~~ 93 (629)
|+.....
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9986543
No 69
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=143.24 Aligned_cols=89 Identities=19% Similarity=0.288 Sum_probs=84.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
.++...+.++|||+|||.++|+++|+++|+.||.|.+|+|++|..|++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCC
Q 043470 84 RISWSCRDP 92 (629)
Q Consensus 84 ~I~~s~~~~ 92 (629)
+|.|+....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dnm_A 86 RVQVARYGR 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEECCcCC
Confidence 999998653
No 70
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=142.00 Aligned_cols=91 Identities=30% Similarity=0.478 Sum_probs=84.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
.....+.++|||+|||.++|+++|+++|+.||+|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCcc
Q 043470 85 ISWSCRDPDAR 95 (629)
Q Consensus 85 I~~s~~~~~~~ 95 (629)
|.|+......+
T Consensus 86 v~~a~~~~~~~ 96 (102)
T 1x5s_A 86 VDQAGKSSDNR 96 (102)
T ss_dssp EEEEECCCCCC
T ss_pred EEECCCCCCCC
Confidence 99998765443
No 71
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=138.77 Aligned_cols=85 Identities=27% Similarity=0.356 Sum_probs=80.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
..++.++++|||+|||.++|+++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccC
Q 043470 85 ISWSC 89 (629)
Q Consensus 85 I~~s~ 89 (629)
|.|+.
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99986
No 72
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=139.08 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=79.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
....+.++|||+|||.++|+++|+++|+.||+|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccC
Q 043470 86 SWSC 89 (629)
Q Consensus 86 ~~s~ 89 (629)
.|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 73
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=140.16 Aligned_cols=85 Identities=26% Similarity=0.553 Sum_probs=80.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASV-RVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si-~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
.++++|||+|||.++|+++|+++|+.||.|.+| +|++|..+++++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 043470 88 SCRDPD 93 (629)
Q Consensus 88 s~~~~~ 93 (629)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 986543
No 74
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=1.8e-17 Score=139.74 Aligned_cols=83 Identities=23% Similarity=0.420 Sum_probs=79.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
++++|||+|||.++++++|+++|+.||.|.+|++.+|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 043470 90 RDP 92 (629)
Q Consensus 90 ~~~ 92 (629)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 75
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=135.83 Aligned_cols=81 Identities=30% Similarity=0.525 Sum_probs=75.6
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46799999999999999999999999999999999985 88999999999999999999999999999999999999998
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 76
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-18 Score=143.05 Aligned_cols=81 Identities=19% Similarity=0.418 Sum_probs=74.5
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCC-CeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEec
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCG-TITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTF-HGYMLHRKPLYVAIA 369 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~~a 369 (629)
+++|||+|||.++|+++|+++|+.|| .|++|+|++|+ +|.+||||||+|.+.++|.+|++.+ |+..++|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999986 6899999999999999999999987 456799999999999
Q ss_pred cchH
Q 043470 370 QRKE 373 (629)
Q Consensus 370 ~~k~ 373 (629)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8764
No 77
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=8.4e-18 Score=154.15 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=110.8
Q ss_pred CCcceEEEEEeCCHHHHHHHHHhc-CCceecCeeeeeeccCCC--------------CCcccCCcccccccccchhhhhH
Q 043470 50 GRSTCYGYVNFLSPHDAIRAIEVK-NHTQLHGKMLRISWSCRD--------------PDARKSGVANLFVKNLIESIDNV 114 (629)
Q Consensus 50 ~~s~G~AfV~F~~~~~A~~Al~~l-n~~~i~g~~i~I~~s~~~--------------~~~~~s~~~~v~V~nLp~~it~~ 114 (629)
...+|+++|+|.+.++|++|++.+ |+..+.| .+++.++... .........+|||+|||.+++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 457899999999999999999999 9999999 9999988652 12333456889999999999999
Q ss_pred HHHHHHccCCCeeEeEEeeCCCCCccceEEEEEcCHHHHHHHHHHhCCCcccCceeeeeccccc
Q 043470 115 RLQEMFQNFGNIISCKVATSEDGKSKGHGFVQFETEESANAAIENLNGTTVGDKRIYVGRFIKK 178 (629)
Q Consensus 115 ~L~~~fs~fG~I~s~kv~~d~~g~skg~afV~f~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~ 178 (629)
+|+++|+.||.|.+|++..+ ++|||||+|.+.++|..|++.+||..+.|+.|.|.+...+
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999876 6899999999999999999999999999999999876543
No 78
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=141.66 Aligned_cols=90 Identities=19% Similarity=0.382 Sum_probs=84.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcC------Cce
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKN------HTQ 77 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln------~~~ 77 (629)
.+....+.++|||+|||.++|+++|+++|+.||.|.+|+|++|..+++++|||||.|.+.++|++|++.|| +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ecCeeeeeeccCCCCC
Q 043470 78 LHGKMLRISWSCRDPD 93 (629)
Q Consensus 78 i~g~~i~I~~s~~~~~ 93 (629)
|.|+.|+|.|+.....
T Consensus 88 ~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSSCEEEEECCCCCCC
T ss_pred EcCEEEEEEECCCCcc
Confidence 9999999999986543
No 79
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=141.25 Aligned_cols=91 Identities=26% Similarity=0.487 Sum_probs=84.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHhc-CCceecCe
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKD-STTGRSTCYGYVNFLSPHDAIRAIEVK-NHTQLHGK 81 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd-~~t~~s~G~AfV~F~~~~~A~~Al~~l-n~~~i~g~ 81 (629)
.++.....++|||+|||.++|+++|+++|+.||.|.+|+|+++ ..+++++|||||+|.+.++|++|++.| |+..|.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3456677899999999999999999999999999999999999 789999999999999999999999999 99999999
Q ss_pred eeeeeccCCCCCc
Q 043470 82 MLRISWSCRDPDA 94 (629)
Q Consensus 82 ~i~I~~s~~~~~~ 94 (629)
.|+|.|+..+...
T Consensus 88 ~l~v~~a~~~~~~ 100 (107)
T 2cph_A 88 RLVLEWADSEVTV 100 (107)
T ss_dssp BCEEEECCCCCCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999876543
No 80
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-17 Score=138.74 Aligned_cols=85 Identities=21% Similarity=0.370 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDST---TGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~---t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
.++++|||+|||.++||++|+++|+.||+|.+|++.+|.. |++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999877 7789999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 043470 86 SWSCRDPD 93 (629)
Q Consensus 86 ~~s~~~~~ 93 (629)
.|+.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99986644
No 81
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=140.61 Aligned_cols=88 Identities=30% Similarity=0.429 Sum_probs=82.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
....+.++|||+|||.++|+++|+++|+.||.|.+|+|++|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 043470 86 SWSCRDPD 93 (629)
Q Consensus 86 ~~s~~~~~ 93 (629)
.|+.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 2cqb_A 87 NLAKPMRI 94 (102)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99986543
No 82
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=138.58 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCee---
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLA-SVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKM--- 82 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~-si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~--- 82 (629)
....+++|||+|||.++||++|+++|+.||.|. +|+|++|+.+++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 455689999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred -eeeeccCCC
Q 043470 83 -LRISWSCRD 91 (629)
Q Consensus 83 -i~I~~s~~~ 91 (629)
|+|.|+...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999998754
No 83
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.9e-17 Score=138.13 Aligned_cols=86 Identities=16% Similarity=0.320 Sum_probs=80.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
....+.++|||+|||.++|+++|+++|+.||.|.+|++.+|. +++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 355667899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 043470 86 SWSCRDP 92 (629)
Q Consensus 86 ~~s~~~~ 92 (629)
.|+...+
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9987654
No 84
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=141.85 Aligned_cols=85 Identities=22% Similarity=0.413 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...++++|||+|||.++|+++|+++|+.||+|.+|++++|..|++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 44566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 043470 87 WSCRD 91 (629)
Q Consensus 87 ~s~~~ 91 (629)
|+...
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98754
No 85
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=8.4e-18 Score=139.93 Aligned_cols=81 Identities=20% Similarity=0.320 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFK--SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G--~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
.+|||+|||.++||++|+++|+.|| .|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 043470 90 RDP 92 (629)
Q Consensus 90 ~~~ 92 (629)
..+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 86
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-18 Score=141.74 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=73.1
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCC--eEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCc----eeCCeEEE
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGT--ITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGY----MLHRKPLY 365 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~--v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~----~~~g~~l~ 365 (629)
-.+|||+|||+++|+++|+++|++||. |.+|++++|+ +|++||||||+|.+.++|.+|++.|||. .++||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 358999999999999999999999995 6799999986 6899999999999999999999999996 58999999
Q ss_pred EEeccc
Q 043470 366 VAIAQR 371 (629)
Q Consensus 366 v~~a~~ 371 (629)
|+||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999974
No 87
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=138.67 Aligned_cols=83 Identities=22% Similarity=0.399 Sum_probs=79.2
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++|+++|+++|+.||.|.+|+++.+++|.++|||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
.+.
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 88
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=6.3e-17 Score=138.74 Aligned_cols=86 Identities=21% Similarity=0.336 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC---eee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG---KML 83 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g---~~i 83 (629)
...+.++|||+|||.++|+++|+++|+.||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+..+.| ++|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999997 78999999999999999999999999999998 999
Q ss_pred eeeccCCCCC
Q 043470 84 RISWSCRDPD 93 (629)
Q Consensus 84 ~I~~s~~~~~ 93 (629)
+|.|+.....
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987654
No 89
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=139.10 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCC--ceecCeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH--TQLHGKMLR 84 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~--~~i~g~~i~ 84 (629)
++.++++|||+|||+++||++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.|++ ..|.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 5677899999999999999999999999999999999975 58999999999999999998864 689999999
Q ss_pred eeccCCCCCcc
Q 043470 85 ISWSCRDPDAR 95 (629)
Q Consensus 85 I~~s~~~~~~~ 95 (629)
|.|+.......
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998765443
No 90
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.3e-17 Score=138.25 Aligned_cols=88 Identities=22% Similarity=0.357 Sum_probs=81.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
.+.+..+.++|||+|||.++|+++|+++|+.|| |.+|+|++|..|++++|||||+|.+.++|++|+ .||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 345666788999999999999999999999997 999999999999999999999999999999999 899999999999
Q ss_pred eeeccCCCCC
Q 043470 84 RISWSCRDPD 93 (629)
Q Consensus 84 ~I~~s~~~~~ 93 (629)
+|.|+.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999986543
No 91
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.4e-17 Score=138.91 Aligned_cols=88 Identities=33% Similarity=0.499 Sum_probs=81.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCce-ecCee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSE-FKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ-LHGKM 82 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~-~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~-i~g~~ 82 (629)
.++..++++|||+|||.++|+++|+++|+. ||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+.. |.|++
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 345667899999999999999999999999 9999999999998 99999999999999999999999999999 99999
Q ss_pred eeeeccCCCCC
Q 043470 83 LRISWSCRDPD 93 (629)
Q Consensus 83 i~I~~s~~~~~ 93 (629)
|+|.|+.....
T Consensus 82 l~v~~a~~~~~ 92 (104)
T 2dhg_A 82 VRLSVAIPKAS 92 (104)
T ss_dssp CCCCBCCCCCS
T ss_pred EEEEEccCCCc
Confidence 99999976543
No 92
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=2.9e-17 Score=141.09 Aligned_cols=90 Identities=14% Similarity=0.282 Sum_probs=83.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee---cC
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQL---HG 80 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i---~g 80 (629)
.+....+.++|||+|||.++||++|+++|+.||.|.+|+|++|..+++++|||||+|.+.++|++|++.||+..+ .|
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 344667788999999999999999999999999999999999999999999999999999999999999999987 89
Q ss_pred eeeeeeccCCCCC
Q 043470 81 KMLRISWSCRDPD 93 (629)
Q Consensus 81 ~~i~I~~s~~~~~ 93 (629)
++|+|.|+.....
T Consensus 86 ~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 86 RPIQVKPADSESR 98 (106)
T ss_dssp SCCEEEECCCCSC
T ss_pred ceEEEEECCcccc
Confidence 9999999986543
No 93
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2.2e-17 Score=133.44 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=70.9
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
.+..|||+||++.+|+++|+++|.+||.|.++++.. +||||||+|.++++|.+|++.||+..++|++|+|++|..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 467899999999999999999999999999999965 699999999999999999999999999999999999953
No 94
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=1.1e-17 Score=142.13 Aligned_cols=83 Identities=28% Similarity=0.400 Sum_probs=78.1
Q ss_pred ccceeeeecCCC------CCCHHHHHHHHhcCCCeEEEEEeeCCC-CCeeeEEEEEeCCHHHHHHHHHHhCCceeCC-eE
Q 043470 292 KGSNVYVKNIDD------DVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHR-KP 363 (629)
Q Consensus 292 ~~~~l~V~nl~~------~~t~~~l~~~F~~~G~v~~~~v~~~~~-g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g-~~ 363 (629)
.+++|||+|||. ++++++|+++|++||.|.+|+|+.++. |++||||||+|.+.++|.+|++.|||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357899999999 999999999999999999999999975 9999999999999999999999999999999 99
Q ss_pred EEEEeccchHH
Q 043470 364 LYVAIAQRKED 374 (629)
Q Consensus 364 l~v~~a~~k~~ 374 (629)
|+|.++.+++.
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99999987654
No 95
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=7.5e-17 Score=148.35 Aligned_cols=87 Identities=23% Similarity=0.301 Sum_probs=80.0
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCC--CeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCG--TITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
..++|||+||++++|+++|+++|+.|| .|.+|+|+.|+ +|++||||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999995 799999999999999999999999999999999999999
Q ss_pred ccchHHHHHH
Q 043470 369 AQRKEDRQAH 378 (629)
Q Consensus 369 a~~k~~~~~~ 378 (629)
+.++...+..
T Consensus 134 a~~~~~~~~e 143 (156)
T 3n9u_C 134 ATRQNLSQFE 143 (156)
T ss_dssp CCHHHHHHHH
T ss_pred cCCCcchhhh
Confidence 9887665543
No 96
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=2.8e-17 Score=153.14 Aligned_cols=139 Identities=15% Similarity=0.277 Sum_probs=79.2
Q ss_pred EEeCCHHHHHHHHHHhCCCeeC--CeEEEEecccchHHHHHHHhhh----hHHHHHHhhhhcccceeeeecCCCCCCHHH
Q 043470 236 VNFDNPDDARRALEAMNGSVIG--SKVLYAARAQKKAEREQILRHQ----FEEKRKERILKYKGSNVYVKNIDDDVTDEE 309 (629)
Q Consensus 236 V~F~~~e~A~~Av~~l~g~~~~--g~~l~v~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 309 (629)
..|++.++|..++..+++.... |+.....+... .+....... .............+++|||+|||+++++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTR--EAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccc--ccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 6788999999999888876554 33333333211 110000000 000111112234567899999999999999
Q ss_pred HHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccchHHHH
Q 043470 310 LKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQ 376 (629)
Q Consensus 310 l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~~~~ 376 (629)
|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+..+..+.
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999999984 88999999999999999999999999999999999999998776544
No 97
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.7e-17 Score=137.70 Aligned_cols=89 Identities=26% Similarity=0.490 Sum_probs=80.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
.+......++|||+|||.++|+++|+++|+.||.|.+|+|++|..+ ++|||||+|.+.++|++|++.||+..|.|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3446677899999999999999999999999999999999998544 68999999999999999999999999999999
Q ss_pred eeeccCCCCCc
Q 043470 84 RISWSCRDPDA 94 (629)
Q Consensus 84 ~I~~s~~~~~~ 94 (629)
+|.|+......
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2cqi_A 86 KVNWATTPSSQ 96 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccc
Confidence 99999875443
No 98
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=136.50 Aligned_cols=81 Identities=33% Similarity=0.579 Sum_probs=77.4
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++++++|+++|+.||.|.+|+++.+++|.++|||||+|.+.++|.+|++.||+..++|++|+|.+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 043470 371 R 371 (629)
Q Consensus 371 ~ 371 (629)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 99
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=6.8e-17 Score=134.93 Aligned_cols=86 Identities=24% Similarity=0.316 Sum_probs=80.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
|....+.++|||+|||.++|+++|+++|+.||.|.+|++.++ +++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 2 SSGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp CCSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 455677899999999999999999999999999999999985 788999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 043470 85 ISWSCRDP 92 (629)
Q Consensus 85 I~~s~~~~ 92 (629)
|.|+....
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 99998654
No 100
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.2e-17 Score=141.08 Aligned_cols=88 Identities=26% Similarity=0.376 Sum_probs=81.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
+......++|||+|||.++||++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++|++.+|+ .|.|++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34566778999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred eeccCCCCC
Q 043470 85 ISWSCRDPD 93 (629)
Q Consensus 85 I~~s~~~~~ 93 (629)
|.|+.....
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999976543
No 101
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=3.5e-17 Score=145.74 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=82.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
+.++.++++|||+|||.++|+++|+++|+.||+|.+|+|++|..+++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 043470 85 ISWSCRD 91 (629)
Q Consensus 85 I~~s~~~ 91 (629)
|.|+..+
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9998754
No 102
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=7.5e-17 Score=140.87 Aligned_cols=85 Identities=26% Similarity=0.481 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
+....++|||+|||.++|+++|+++|+.||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 043470 87 WSCRDP 92 (629)
Q Consensus 87 ~s~~~~ 92 (629)
|+....
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 997553
No 103
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=6.6e-17 Score=133.51 Aligned_cols=83 Identities=20% Similarity=0.433 Sum_probs=76.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
+....+.++|||+|||+++|+++|+++|+.||.|.+|++++|..|++++|||||.|.+.++|++|++. ++..|.|+.|+
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999965 77889999999
Q ss_pred eecc
Q 043470 85 ISWS 88 (629)
Q Consensus 85 I~~s 88 (629)
|.|+
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 104
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=4.4e-17 Score=136.99 Aligned_cols=84 Identities=27% Similarity=0.555 Sum_probs=78.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
+......++|||+|||+++|+++|+++|+.||+|.+|+|++|.. ++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 34566778999999999999999999999999999999999975 88999999999999999999999999999999999
Q ss_pred eeccC
Q 043470 85 ISWSC 89 (629)
Q Consensus 85 I~~s~ 89 (629)
|.|+.
T Consensus 89 V~~a~ 93 (95)
T 2ywk_A 89 VSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 99975
No 105
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=4.3e-17 Score=133.95 Aligned_cols=80 Identities=29% Similarity=0.476 Sum_probs=76.0
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~-~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++++++|+++|+.||.|.+|+++.+ .+|.++|||||+|.+.++|.+|++.|||..++|++|+|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999988 57889999999999999999999999999999999999998
Q ss_pred c
Q 043470 370 Q 370 (629)
Q Consensus 370 ~ 370 (629)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 106
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=1.4e-17 Score=138.60 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=71.5
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCC--CeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCG--TITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
.+|||+||++++|+++|+++|+.|| .|.+|+++.|+ +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 99999999986 89999999999999999999999999999999999999997
Q ss_pred chHH
Q 043470 371 RKED 374 (629)
Q Consensus 371 ~k~~ 374 (629)
.+..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 107
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=139.23 Aligned_cols=84 Identities=27% Similarity=0.421 Sum_probs=79.4
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
..+++|||+|||+++|+++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|||..|+|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356899999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred cchHH
Q 043470 370 QRKED 374 (629)
Q Consensus 370 ~~k~~ 374 (629)
+.+..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 87654
No 108
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=141.52 Aligned_cols=85 Identities=61% Similarity=0.981 Sum_probs=80.1
Q ss_pred hhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 289 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.+ +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456789999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred ccchHH
Q 043470 369 AQRKED 374 (629)
Q Consensus 369 a~~k~~ 374 (629)
++.+..
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 987654
No 109
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=3.5e-17 Score=140.36 Aligned_cols=84 Identities=27% Similarity=0.464 Sum_probs=79.5
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC---eEEEEE
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR---KPLYVA 367 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g---~~l~v~ 367 (629)
..+++|||+|||+++++++|+++|+.||.|.+|+|+.+++|.++|||||+|.+.++|.+|++.|||..+.| ++|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred eccchHH
Q 043470 368 IAQRKED 374 (629)
Q Consensus 368 ~a~~k~~ 374 (629)
|++.+..
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987654
No 110
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=3.9e-17 Score=141.30 Aligned_cols=87 Identities=20% Similarity=0.423 Sum_probs=81.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
....++++|||+|||.++|+++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 043470 86 SWSCRDP 92 (629)
Q Consensus 86 ~~s~~~~ 92 (629)
.|+...+
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9987553
No 111
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.4e-17 Score=139.94 Aligned_cols=88 Identities=23% Similarity=0.367 Sum_probs=82.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCce
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLA--------SVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~--------si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~ 77 (629)
......++|||+|||.++|+++|+++|+.||.|. .|+|++|+.+++++|||||+|.+.++|++|++.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3566789999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred ecCeeeeeeccCCCCC
Q 043470 78 LHGKMLRISWSCRDPD 93 (629)
Q Consensus 78 i~g~~i~I~~s~~~~~ 93 (629)
|.|+.|+|.|+.....
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987654
No 112
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=7e-17 Score=138.96 Aligned_cols=84 Identities=29% Similarity=0.396 Sum_probs=79.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
++...+.++|||+|||.++|+++|+++|+.||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4556678899999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred eeccC
Q 043470 85 ISWSC 89 (629)
Q Consensus 85 I~~s~ 89 (629)
|.|+.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 113
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.5e-17 Score=137.92 Aligned_cols=88 Identities=23% Similarity=0.306 Sum_probs=82.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
.......++|||+|||+++|+++|+++|+.||+|.+|+|++|..+++++|||||+|.+.++|++||+. |+..|.|+.|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred eeccCCCCC
Q 043470 85 ISWSCRDPD 93 (629)
Q Consensus 85 I~~s~~~~~ 93 (629)
|.|+.....
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999986543
No 114
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=136.96 Aligned_cols=85 Identities=32% Similarity=0.490 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...+.++|||+|||+++|+++|+++|+.||.|.+|++++| +++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4557789999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 043470 87 WSCRDPD 93 (629)
Q Consensus 87 ~s~~~~~ 93 (629)
|+.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9986644
No 115
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.5e-17 Score=138.02 Aligned_cols=89 Identities=21% Similarity=0.405 Sum_probs=81.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTT-GRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t-~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
+.+..+.++|||+|||.++|+++|+++|+.|| |.+|+|++|..| ++++|||||+|.+.++|++|| .||+..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34556678999999999999999999999999 999999999888 999999999999999999999 899999999999
Q ss_pred eeeccCCCCCcc
Q 043470 84 RISWSCRDPDAR 95 (629)
Q Consensus 84 ~I~~s~~~~~~~ 95 (629)
+|.|+.......
T Consensus 87 ~V~~a~~~~~~~ 98 (104)
T 1wi8_A 87 RVDVADQAQDKD 98 (104)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 999998665433
No 116
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=3.8e-17 Score=143.28 Aligned_cols=83 Identities=29% Similarity=0.449 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
+..+.++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 043470 87 WSC 89 (629)
Q Consensus 87 ~s~ 89 (629)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 117
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=5.6e-17 Score=136.65 Aligned_cols=83 Identities=28% Similarity=0.443 Sum_probs=78.4
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
+++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5789999999999999999999999999999999985 689999999999999999999999999999999999999987
Q ss_pred hHHH
Q 043470 372 KEDR 375 (629)
Q Consensus 372 k~~~ 375 (629)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7654
No 118
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=140.24 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=73.3
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEE
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH--GYMLHRKPLYVA 367 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~--~~~~~g~~l~v~ 367 (629)
...+++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||+|.+.++|.+|++.++ +..|+|++|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 456789999999999999999999999999999999975 7899999999999999999886 478999999999
Q ss_pred eccchHH
Q 043470 368 IAQRKED 374 (629)
Q Consensus 368 ~a~~k~~ 374 (629)
|++.+..
T Consensus 88 ~A~~~~~ 94 (105)
T 1sjq_A 88 FSNHKEL 94 (105)
T ss_dssp CCSSSSC
T ss_pred EcCCCCC
Confidence 9987654
No 119
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=140.93 Aligned_cols=88 Identities=26% Similarity=0.501 Sum_probs=82.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
|+...+.++|||+|||.++|+++|+++|+.||.|.+|+++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 44455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 043470 85 ISWSCRDP 92 (629)
Q Consensus 85 I~~s~~~~ 92 (629)
|.|+....
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99988653
No 120
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=144.90 Aligned_cols=87 Identities=24% Similarity=0.342 Sum_probs=81.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
+....++|||+|||.++||++|+++|+.||.|.+|+|++|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 043470 87 WSCRDPD 93 (629)
Q Consensus 87 ~s~~~~~ 93 (629)
|+.....
T Consensus 118 ~a~~~~~ 124 (139)
T 1u6f_A 118 LAASGHQ 124 (139)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9986543
No 121
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-17 Score=135.96 Aligned_cols=82 Identities=26% Similarity=0.462 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
+.++++|||+|||.++|+++|+++|+.||.|.+|++.+|..+++++|||||+|.+.++|++|++.||+..|.|+.+++.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 043470 88 SC 89 (629)
Q Consensus 88 s~ 89 (629)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 122
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.69 E-value=6.9e-17 Score=140.97 Aligned_cols=84 Identities=30% Similarity=0.591 Sum_probs=79.0
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.||+..|+|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 356899999999999999999999999999999999987 7999999999999999999999999999999999999999
Q ss_pred cchHH
Q 043470 370 QRKED 374 (629)
Q Consensus 370 ~~k~~ 374 (629)
+.+..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 86643
No 123
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-17 Score=139.35 Aligned_cols=82 Identities=26% Similarity=0.315 Sum_probs=76.8
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
..++|||+|||+++|+++|+++|+.||.|.+|+++.+..|.+||||||+|.+.++|.+|+. +++..++|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4578999999999999999999999999999999999889999999999999999999998 999999999999999875
Q ss_pred hHH
Q 043470 372 KED 374 (629)
Q Consensus 372 k~~ 374 (629)
...
T Consensus 89 ~~~ 91 (103)
T 1s79_A 89 YFA 91 (103)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 124
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=134.98 Aligned_cols=88 Identities=23% Similarity=0.326 Sum_probs=80.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
.+......++|||+|||.++|+++|+++|+.||.|.+|+|++|.. .++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345667789999999999999999999999999999999999854 389999999999999999999999999999999
Q ss_pred eeeccCCCCC
Q 043470 84 RISWSCRDPD 93 (629)
Q Consensus 84 ~I~~s~~~~~ 93 (629)
+|.|+.....
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 9999986643
No 125
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=3.6e-17 Score=139.18 Aligned_cols=92 Identities=28% Similarity=0.447 Sum_probs=82.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCCC
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD 91 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~ 91 (629)
++|||+|||.++|+++|+++|+.||+|.+|++.++ ++|||||+|.+.++|++|++.||+..+.|+.|+|.|+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 6789999999999999999999999999999999999765
Q ss_pred CCc--------ccCCcccccccccc
Q 043470 92 PDA--------RKSGVANLFVKNLI 108 (629)
Q Consensus 92 ~~~--------~~s~~~~v~V~nLp 108 (629)
+.. +.....+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 421 22235689999986
No 126
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=7.5e-17 Score=139.23 Aligned_cols=85 Identities=19% Similarity=0.344 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
+....++|||+|||.++||++|+++|+.||.|.+|+|++|..|++++|||||+|.+.++|++|++.++ ..|.|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEE
Confidence 56677899999999999999999999999999999999999999999999999999999999999865 89999999999
Q ss_pred ccCCCC
Q 043470 87 WSCRDP 92 (629)
Q Consensus 87 ~s~~~~ 92 (629)
|+....
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987654
No 127
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=2.1e-17 Score=140.34 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC-e
Q 043470 9 TTPASLYVGDLHP------DVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG-K 81 (629)
Q Consensus 9 ~~~~sLyV~nLp~------~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g-~ 81 (629)
..+++|||+|||. ++++++|+++|++||.|.+|+|++|..|++++|||||.|.+.++|++|++.||+..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred eeeeeccC
Q 043470 82 MLRISWSC 89 (629)
Q Consensus 82 ~i~I~~s~ 89 (629)
.|+|.|+.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999875
No 128
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=4e-17 Score=136.88 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=73.3
Q ss_pred hhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEE
Q 043470 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM--LHRKPLYV 366 (629)
Q Consensus 289 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~--~~g~~l~v 366 (629)
...++++|||+|||+++|+++|+++|++||.|++|++++ +||||||+|.+.++|.+|++.|++.. ++|++|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345678999999999999999999999999999999985 47899999999999999999999875 78999999
Q ss_pred EeccchH
Q 043470 367 AIAQRKE 373 (629)
Q Consensus 367 ~~a~~k~ 373 (629)
.|++.++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 129
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=1.2e-16 Score=137.40 Aligned_cols=81 Identities=27% Similarity=0.463 Sum_probs=77.8
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...+++|||+|||+++|+++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 043470 370 Q 370 (629)
Q Consensus 370 ~ 370 (629)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 130
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9e-17 Score=137.26 Aligned_cols=84 Identities=25% Similarity=0.479 Sum_probs=79.0
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
....++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4457899999999999999999999999999999999985 789999999999999999999999999999999999999
Q ss_pred ccchH
Q 043470 369 AQRKE 373 (629)
Q Consensus 369 a~~k~ 373 (629)
++.+.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98664
No 131
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.69 E-value=1.4e-16 Score=139.01 Aligned_cols=84 Identities=31% Similarity=0.539 Sum_probs=78.8
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
....++|||+|||+++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999985 899999999999999999999999999999999999999
Q ss_pred ccchH
Q 043470 369 AQRKE 373 (629)
Q Consensus 369 a~~k~ 373 (629)
+..+.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98653
No 132
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=133.45 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=76.9
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
...+++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|||..++|++|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999999986 488999999999999999999999999999999999999
Q ss_pred ccc
Q 043470 369 AQR 371 (629)
Q Consensus 369 a~~ 371 (629)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 133
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=141.58 Aligned_cols=82 Identities=24% Similarity=0.535 Sum_probs=78.5
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++|+++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
.+
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 134
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=138.64 Aligned_cols=82 Identities=34% Similarity=0.596 Sum_probs=78.1
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..+++|||+||++++++++|+++|+.||.|.+|+|+.+++|.++|||||+|.+.++|.+|++.||+..|+|+.|.|.+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 135
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.1e-17 Score=135.32 Aligned_cols=82 Identities=29% Similarity=0.586 Sum_probs=77.6
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
.+++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|++|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 56899999999999999999999999999999999986 58899999999999999999999999999999999999997
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
.+.
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 136
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.3e-17 Score=138.43 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
....++|||+|||+++|+++|.++|+.||+|.+|+|++|.. ++++|||||+|.+.++|++|++ +++..|.|+.|+|.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999977 9999999999999999999998 899999999999998
Q ss_pred cCC
Q 043470 88 SCR 90 (629)
Q Consensus 88 s~~ 90 (629)
...
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 753
No 137
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=1.1e-16 Score=132.84 Aligned_cols=81 Identities=19% Similarity=0.351 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccC
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSC 89 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~ 89 (629)
..++|||+|||.++|+++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.|+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999999999999999999999999999 899999999999999987
Q ss_pred CC
Q 043470 90 RD 91 (629)
Q Consensus 90 ~~ 91 (629)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 138
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-16 Score=136.91 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=80.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
.....++++|||+|||.++|+++|+++|+.||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3456678999999999999999999999999999999999997 689999999999999999999999999999999999
Q ss_pred eeccCCC
Q 043470 85 ISWSCRD 91 (629)
Q Consensus 85 I~~s~~~ 91 (629)
|.|+...
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 9998744
No 139
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-16 Score=133.76 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=80.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
+....+.++|||+|||.++|+++|+++|+.||.|.+|+|++|..+++++|||||+|.+.++|++||+ +...|.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3455677899999999999999999999999999999999999999999999999999999999998 46789999999
Q ss_pred eeccCCCCCc
Q 043470 85 ISWSCRDPDA 94 (629)
Q Consensus 85 I~~s~~~~~~ 94 (629)
|.|+......
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999876543
No 140
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=135.47 Aligned_cols=82 Identities=34% Similarity=0.630 Sum_probs=76.7
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC--C--CeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK--G--INKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~--g--~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
.+++|||+|||+++++++|+++|+.||.|.+|+++.+.. | .++|||||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 567999999999999999999999999999999998864 4 899999999999999999999999999999999999
Q ss_pred eccchH
Q 043470 368 IAQRKE 373 (629)
Q Consensus 368 ~a~~k~ 373 (629)
+++.+.
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 997653
No 141
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=135.70 Aligned_cols=81 Identities=27% Similarity=0.464 Sum_probs=76.3
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEE--------EEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITS--------AKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~ 360 (629)
....++|||+||++++++++|+++|+.||.|.+ |+++.++ +|+++|||||+|.+.++|.+|++.|||..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345789999999999999999999999999999 9999984 6999999999999999999999999999999
Q ss_pred CeEEEEEecc
Q 043470 361 RKPLYVAIAQ 370 (629)
Q Consensus 361 g~~l~v~~a~ 370 (629)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999984
No 142
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.8e-17 Score=137.00 Aligned_cols=83 Identities=30% Similarity=0.612 Sum_probs=78.2
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEE-EEeeC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSA-KVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~-~v~~~-~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
.+++|||+|||+++++++|+++|+.||.|.+| +++.+ .+|.++|||||+|.+.++|.+|++.|||..++|++|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 99998 58899999999999999999999999999999999999999
Q ss_pred cchHH
Q 043470 370 QRKED 374 (629)
Q Consensus 370 ~~k~~ 374 (629)
..+..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 86643
No 143
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=1.2e-17 Score=149.98 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=78.9
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCeeCCeEEEEecccchHHHHHHHhhhhHHHHHHhhhhcccceeeeecCCCCCCHHHHHH
Q 043470 233 FGFVNFDNPDDARRALEAMNGSVIGSKVLYAARAQKKAEREQILRHQFEEKRKERILKYKGSNVYVKNIDDDVTDEELKA 312 (629)
Q Consensus 233 ~afV~F~~~e~A~~Av~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~ 312 (629)
+.|++|++...+..|++.+++....++.-. .+... ......+++|||+|||+++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~-~~~~~------------------~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSM-SYGRP------------------PPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp -----------------------------C-CSCCS------------------CSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCC-CcCCC------------------CCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 568888888889999998887665554311 11110 11233567899999999999999999
Q ss_pred HHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 313 HFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 313 ~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
+|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|+|++|+|.|++.+
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999886 7899999999999999999999999999999999999999765
No 144
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=146.94 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFK--SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G--~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
..++|||+|||+++||++|+++|+.|| .|.+|+|++|+.|++++|||||+|.+.++|++||+.||+..|.|+.|+|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 347999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 043470 88 SCR 90 (629)
Q Consensus 88 s~~ 90 (629)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 863
No 145
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=5e-17 Score=130.18 Aligned_cols=75 Identities=23% Similarity=0.370 Sum_probs=72.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 13 sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
+|||+|||+++|+++|+++|+.||+|.+|++.+|..+++++|||||+|.+.++|++|++ ||+..|.|++|+|.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 8999999999999885
No 146
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.3e-17 Score=135.31 Aligned_cols=80 Identities=26% Similarity=0.380 Sum_probs=75.3
Q ss_pred cccceeeeecCCCCCCHHHHH----HHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 043470 291 YKGSNVYVKNIDDDVTDEELK----AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 366 (629)
..+++|||+|||+++++++|+ ++|++||.|.+|+++.++.+ +|||||+|.+.++|.+|++.|||..++|++|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 356799999999999999999 99999999999999998776 899999999999999999999999999999999
Q ss_pred Eeccch
Q 043470 367 AIAQRK 372 (629)
Q Consensus 367 ~~a~~k 372 (629)
.+++.+
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 999754
No 147
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=137.06 Aligned_cols=83 Identities=23% Similarity=0.436 Sum_probs=78.0
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
..+++|||+|||+++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456889999999999999999999999999999999986 5899999999999999999999999999999999999999
Q ss_pred cchH
Q 043470 370 QRKE 373 (629)
Q Consensus 370 ~~k~ 373 (629)
..+.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8653
No 148
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=131.15 Aligned_cols=85 Identities=16% Similarity=0.334 Sum_probs=79.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
.+.....++|||+|||.++|+++|+++|+.| .|.+|++++| .+++++|||||+|.+.++|++|++ ||+..|.|+.|+
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~ 80 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIE 80 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEE
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEE
Confidence 3455678899999999999999999999999 9999999999 889999999999999999999999 999999999999
Q ss_pred eeccCCCC
Q 043470 85 ISWSCRDP 92 (629)
Q Consensus 85 I~~s~~~~ 92 (629)
|.|+...+
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99988664
No 149
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=9.6e-17 Score=135.73 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
.....++|||+|||.++|+++|+++|+.||.|.+++++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 043470 87 WSCRD 91 (629)
Q Consensus 87 ~s~~~ 91 (629)
|+...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 150
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=135.52 Aligned_cols=83 Identities=30% Similarity=0.517 Sum_probs=77.4
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
....++|||+|||+++|+++|+++|+.||.|.+|+++.+..+ ++|||||+|.+.++|.+|++.||+..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345689999999999999999999999999999999998765 8999999999999999999999999999999999999
Q ss_pred cchH
Q 043470 370 QRKE 373 (629)
Q Consensus 370 ~~k~ 373 (629)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2cq3_A 91 TARV 94 (103)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8653
No 151
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.1e-16 Score=129.37 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
..+..||||||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3567999999999999999999999999999999965 6899999999999999999999999999999999887
Q ss_pred C
Q 043470 89 C 89 (629)
Q Consensus 89 ~ 89 (629)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 152
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=134.05 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=75.6
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.||+..++|++|+|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 356799999999999999999999999999999999986 4889999999999999999999999999999999999998
Q ss_pred c
Q 043470 370 Q 370 (629)
Q Consensus 370 ~ 370 (629)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 153
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=1.1e-16 Score=140.26 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=78.7
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCC---eEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGT---ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 35678999999999999999999999999 899999999999999999999999999999999 99999999999999
Q ss_pred eccchHHH
Q 043470 368 IAQRKEDR 375 (629)
Q Consensus 368 ~a~~k~~~ 375 (629)
++..++..
T Consensus 94 ~a~~~~~~ 101 (118)
T 2db1_A 94 KSHRTEMD 101 (118)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99876543
No 154
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=136.46 Aligned_cols=85 Identities=29% Similarity=0.496 Sum_probs=79.9
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
.++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 4689999999999999999999999999999999985 789999999999999999999999999999999999999998
Q ss_pred hHHHHH
Q 043470 372 KEDRQA 377 (629)
Q Consensus 372 k~~~~~ 377 (629)
+..+..
T Consensus 88 ~~~~~~ 93 (104)
T 1p1t_A 88 EKNKEE 93 (104)
T ss_dssp TTHHHH
T ss_pred ccchhh
Confidence 776643
No 155
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=132.27 Aligned_cols=83 Identities=20% Similarity=0.398 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGR-STCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~-s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
..+++|||+|||.++|+++|+++|+.||.|.+|++.+|..++. ++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999988766 899999999999999999999999999999999998
Q ss_pred cCCC
Q 043470 88 SCRD 91 (629)
Q Consensus 88 s~~~ 91 (629)
+...
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8643
No 156
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=1.1e-16 Score=142.10 Aligned_cols=88 Identities=23% Similarity=0.421 Sum_probs=82.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
|....++++|||+|||.++|+++|+++|+.||.|.+|+|.+|..+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 043470 85 ISWSCRDP 92 (629)
Q Consensus 85 I~~s~~~~ 92 (629)
|.|+....
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99997554
No 157
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=8.2e-17 Score=137.74 Aligned_cols=84 Identities=29% Similarity=0.489 Sum_probs=79.4
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhc-CCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEEe
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQ-CGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM-LHRKPLYVAI 368 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~-~~g~~l~v~~ 368 (629)
..+++|||+|||+++|+++|+++|+. ||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.||+.. ++|++|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45689999999999999999999999 999999999999999999999999999999999999999999 9999999999
Q ss_pred ccchHH
Q 043470 369 AQRKED 374 (629)
Q Consensus 369 a~~k~~ 374 (629)
+..+..
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 976643
No 158
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=9.2e-17 Score=138.97 Aligned_cols=85 Identities=20% Similarity=0.401 Sum_probs=79.1
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
...+++|||+|||+++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456889999999999999999999999999999999885 789999999999999999999999999999999999999
Q ss_pred ccchHH
Q 043470 369 AQRKED 374 (629)
Q Consensus 369 a~~k~~ 374 (629)
+..+..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987643
No 159
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.8e-17 Score=137.81 Aligned_cols=85 Identities=29% Similarity=0.493 Sum_probs=79.4
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
....++|||+|||+++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456899999999999999999999999999999999987 789999999999999999999999999999999999999
Q ss_pred ccchHH
Q 043470 369 AQRKED 374 (629)
Q Consensus 369 a~~k~~ 374 (629)
+..+..
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 986643
No 160
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=8e-17 Score=144.16 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=78.9
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCC---eEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGT---ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.|++|+++|||||+|.+.++|.+|++ +|+..|+||.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 35678999999999999999999999999 899999999999999999999999999999999 99999999999999
Q ss_pred eccchHHH
Q 043470 368 IAQRKEDR 375 (629)
Q Consensus 368 ~a~~k~~~ 375 (629)
++..++..
T Consensus 121 ~a~~~e~~ 128 (136)
T 2hgl_A 121 KSHRTEMD 128 (136)
T ss_dssp ECCHHHHH
T ss_pred ECChHHHH
Confidence 99877654
No 161
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=5.4e-17 Score=137.88 Aligned_cols=83 Identities=20% Similarity=0.424 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDS-TTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~-~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
.....++|||+|||.++|+++|+++|+.|| |.+|+|.+|. .+++++|||||+|.+.++|++|+ .||+..|.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 556678999999999999999999999999 9999999998 68999999999999999999999 89999999999999
Q ss_pred eccCCC
Q 043470 86 SWSCRD 91 (629)
Q Consensus 86 ~~s~~~ 91 (629)
.|+...
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998754
No 162
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.9e-17 Score=130.92 Aligned_cols=76 Identities=21% Similarity=0.392 Sum_probs=73.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
++|||+|||.++|+++|+++|++||+|.+|++.+|..+++++|||||.|.+.++|++|++.++ ..+.|++|+|.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999999999999999999999999999999999 9999999999886
No 163
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=135.06 Aligned_cols=83 Identities=27% Similarity=0.470 Sum_probs=77.5
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++ +|+..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999985 68899999999999999999998 9999999999999999
Q ss_pred cchHH
Q 043470 370 QRKED 374 (629)
Q Consensus 370 ~~k~~ 374 (629)
..+..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 86643
No 164
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=1.5e-16 Score=132.85 Aligned_cols=82 Identities=30% Similarity=0.510 Sum_probs=77.1
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..+++|||+|||+++++++|+++|+.||.|.+|+++.+ +|.++|||||+|.+.++|.+|++.||+..++|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45689999999999999999999999999999999985 78999999999999999999999999999999999999997
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
.+.
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 165
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=137.75 Aligned_cols=83 Identities=30% Similarity=0.559 Sum_probs=78.1
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
..+++|||+|||.++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999999985 6889999999999999999999999999999999999999
Q ss_pred cchH
Q 043470 370 QRKE 373 (629)
Q Consensus 370 ~~k~ 373 (629)
+++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8763
No 166
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=133.48 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCce--ecCeee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ--LHGKML 83 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~--i~g~~i 83 (629)
....++++|||+|||.++||++|+++|++||.|.+|++++ ++|||||+|.+.++|++|++.||+.. |.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3456789999999999999999999999999999999985 45899999999999999999999875 789999
Q ss_pred eeeccCCC
Q 043470 84 RISWSCRD 91 (629)
Q Consensus 84 ~I~~s~~~ 91 (629)
+|.||+..
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999754
No 167
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.67 E-value=1.9e-16 Score=131.28 Aligned_cols=79 Identities=28% Similarity=0.577 Sum_probs=75.1
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
.++|||+|||+++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|+ .+||..++|+.|.|.+++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4689999999999999999999999999999999986 8899999999999999999999 9999999999999999975
Q ss_pred h
Q 043470 372 K 372 (629)
Q Consensus 372 k 372 (629)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 168
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.4e-17 Score=136.86 Aligned_cols=84 Identities=27% Similarity=0.431 Sum_probs=78.3
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~-~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++++++|+++|+.||.|.+|+++.+ .+|.++|||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35689999999999999999999999999999999988 46889999999999999999999999999999999999999
Q ss_pred cchHH
Q 043470 370 QRKED 374 (629)
Q Consensus 370 ~~k~~ 374 (629)
+.+..
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86543
No 169
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.8e-17 Score=140.35 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=80.2
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCe-EEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTI-TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v-~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.|.+|+++|||||+|.+.++|.+|++. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356789999999999999999999999999 999999999999999999999999999999987 999999999999999
Q ss_pred cchHHHHH
Q 043470 370 QRKEDRQA 377 (629)
Q Consensus 370 ~~k~~~~~ 377 (629)
..++.+..
T Consensus 92 ~~~~~~~~ 99 (114)
T 2cpy_A 92 TLEDMREI 99 (114)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 88776653
No 170
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=134.97 Aligned_cols=83 Identities=27% Similarity=0.372 Sum_probs=77.1
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++++++|+++|+.||.|.+|+++.+..+ ++|||||+|.+.++|.+|++.||+..|+|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 45689999999999999999999999999999999998654 79999999999999999999999999999999999998
Q ss_pred chHH
Q 043470 371 RKED 374 (629)
Q Consensus 371 ~k~~ 374 (629)
.+..
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 7543
No 171
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=7.3e-17 Score=144.24 Aligned_cols=84 Identities=18% Similarity=0.396 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc----eecC
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLAS--VRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT----QLHG 80 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~s--i~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~----~i~g 80 (629)
.....++|||+|||+++||++|+++|+.||.|.+ |+|++|+.|++++|||||+|.+. +|++|++.||+. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4556789999999999999999999999999977 99999999999999999999999 999999999999 9999
Q ss_pred eeeeeeccCCC
Q 043470 81 KMLRISWSCRD 91 (629)
Q Consensus 81 ~~i~I~~s~~~ 91 (629)
+.|+|.|+...
T Consensus 98 r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 KTINVEFAKGS 108 (131)
T ss_dssp CCCCCEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999998754
No 172
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=2.4e-16 Score=139.46 Aligned_cols=85 Identities=28% Similarity=0.378 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...++++|||+|||.++++++|+++|+.||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45667899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 043470 87 WSCRDP 92 (629)
Q Consensus 87 ~s~~~~ 92 (629)
|+....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 998653
No 173
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=130.89 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=76.4
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++++++|+++|+.| .|.+|+++.+.+|+++|||||+|.+.++|.+|++ +||..|+|+.|.|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 356799999999999999999999999 9999999999999999999999999999999999 99999999999999997
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
.+
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 174
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=8.8e-17 Score=135.12 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
.+..++|||+|||.++|+++|+++|+.||.|.+++++++..+++++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 043470 88 SC 89 (629)
Q Consensus 88 s~ 89 (629)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 175
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.9e-16 Score=134.15 Aligned_cols=85 Identities=21% Similarity=0.461 Sum_probs=77.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
....+.++|||+|||.++|+++|+++|+.||.|.+|+|..+ ++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 35567789999999999999999999999999999999654 458999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 043470 86 SWSCRDPD 93 (629)
Q Consensus 86 ~~s~~~~~ 93 (629)
.|+.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99986543
No 176
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=136.86 Aligned_cols=85 Identities=28% Similarity=0.477 Sum_probs=79.0
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC--CCCeeeEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE--KGINKGFGFVCFSSPEEASKAVNTF-HGYMLHRKPLYV 366 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~--~g~~kg~~fV~f~~~~~A~~A~~~l-~~~~~~g~~l~v 366 (629)
....++|||+|||+++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.| |+..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 3457899999999999999999999999999999999984 8899999999999999999999999 999999999999
Q ss_pred EeccchHH
Q 043470 367 AIAQRKED 374 (629)
Q Consensus 367 ~~a~~k~~ 374 (629)
.|+..+..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99986643
No 177
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.66 E-value=7.7e-17 Score=144.73 Aligned_cols=89 Identities=24% Similarity=0.357 Sum_probs=83.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
+|++....++|||+|||.++|+++|+++|+.||.|.+|+|++|..+++++|||||+|.+.++|++|++.||+..|.|++|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 45566678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCC
Q 043470 84 RISWSCRDP 92 (629)
Q Consensus 84 ~I~~s~~~~ 92 (629)
+|.|+....
T Consensus 120 ~V~~a~~~~ 128 (135)
T 2lea_A 120 RVQMARYGR 128 (135)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998653
No 178
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=132.49 Aligned_cols=81 Identities=22% Similarity=0.405 Sum_probs=75.3
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC--CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK--GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~--g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
..++|||+|||.++|+++|+++|+.||.|.+|+++.+.. +.++|||||+|.+.++|.+|++.|||..++|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999998863 338999999999999999999999999999999999999
Q ss_pred cch
Q 043470 370 QRK 372 (629)
Q Consensus 370 ~~k 372 (629)
...
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 179
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=135.30 Aligned_cols=79 Identities=19% Similarity=0.353 Sum_probs=74.6
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
.++|||+|||+++|+++|+++|+.| .|.+|+|+.|++|+++|||||+|.+.++|.+|+ .+|+..|+||.|.|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 3589999999999999999999999 899999999999999999999999999999999 69999999999999998765
Q ss_pred H
Q 043470 373 E 373 (629)
Q Consensus 373 ~ 373 (629)
+
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 180
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=133.90 Aligned_cols=82 Identities=20% Similarity=0.373 Sum_probs=77.1
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeE-EEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTIT-SAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP----L 364 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~-~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~----l 364 (629)
..+++|||+|||+++++++|+++|+.||.|. +|+++.++ +|.++|||||+|.+.++|.+|++.|||..++|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3568999999999999999999999999999 99999986 7899999999999999999999999999999999 9
Q ss_pred EEEeccch
Q 043470 365 YVAIAQRK 372 (629)
Q Consensus 365 ~v~~a~~k 372 (629)
+|.|++..
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99998753
No 181
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=140.12 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=76.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELF----DAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG 80 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~----~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g 80 (629)
+++..++++|||+|||+++++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|++|++.||+..|.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3456678899999999999998865 7999999999998854 67799999999999999999999999999999
Q ss_pred eeeeeeccCCCC
Q 043470 81 KMLRISWSCRDP 92 (629)
Q Consensus 81 ~~i~I~~s~~~~ 92 (629)
++|+|.|+....
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999998664
No 182
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=137.60 Aligned_cols=82 Identities=29% Similarity=0.492 Sum_probs=76.9
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
....++|||+||+.++++++|+++|+.||.|.+|+++.+.. .++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 44678999999999999999999999999999999999864 48999999999999999999999999999999999999
Q ss_pred cch
Q 043470 370 QRK 372 (629)
Q Consensus 370 ~~k 372 (629)
+.+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 865
No 183
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=5.2e-16 Score=143.13 Aligned_cols=86 Identities=22% Similarity=0.403 Sum_probs=81.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...+.++|||+|||.++||++|+++|+.||+|.+|+|++|..|++++|||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 043470 87 WSCRDP 92 (629)
Q Consensus 87 ~s~~~~ 92 (629)
|+....
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 997654
No 184
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-16 Score=132.88 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=75.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc--eecC
Q 043470 3 VVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT--QLHG 80 (629)
Q Consensus 3 ~~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~--~i~g 80 (629)
..+....++++|||+|||.++||++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|++. .|.|
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 7 GSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34556678899999999999999999999999999999999864 589999999999999999988754 5999
Q ss_pred eeeeeeccCCCCC
Q 043470 81 KMLRISWSCRDPD 93 (629)
Q Consensus 81 ~~i~I~~s~~~~~ 93 (629)
++|+|.|+.....
T Consensus 81 r~l~V~~a~~~~~ 93 (104)
T 1wex_A 81 QQAFFNYSTSKRI 93 (104)
T ss_dssp SBCEEEECSSSSC
T ss_pred EEEEEEEccCccc
Confidence 9999999986543
No 185
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=2.4e-16 Score=139.45 Aligned_cols=82 Identities=27% Similarity=0.455 Sum_probs=78.1
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..+++|||+||++++++++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
.+
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 186
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=133.74 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=76.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
..+...++|||+|||+++||++|+++|+.||. ++|+|++|. +++++|||||+|.+.++|++||+ +|+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 35567789999999999999999999999995 599999997 89999999999999999999995 7999999999999
Q ss_pred eccCCCC
Q 043470 86 SWSCRDP 92 (629)
Q Consensus 86 ~~s~~~~ 92 (629)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9887654
No 187
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=136.59 Aligned_cols=82 Identities=22% Similarity=0.343 Sum_probs=77.3
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 356899999999999999999999999999999999986 4889999999999999999999999999999999999999
Q ss_pred cch
Q 043470 370 QRK 372 (629)
Q Consensus 370 ~~k 372 (629)
+.+
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 754
No 188
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=135.81 Aligned_cols=83 Identities=24% Similarity=0.470 Sum_probs=77.9
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++++++|+++|+.||.|.+|+++.++ ++.++|||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999999999985 6889999999999999999999999999999999999999
Q ss_pred cchH
Q 043470 370 QRKE 373 (629)
Q Consensus 370 ~~k~ 373 (629)
+.+.
T Consensus 90 ~~~~ 93 (102)
T 1x5s_A 90 GKSS 93 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8664
No 189
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=137.80 Aligned_cols=82 Identities=21% Similarity=0.434 Sum_probs=76.9
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC-CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK-GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~-g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
.++|||+||++++++++|+++|+.||.|.+|+++.++. |.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 47899999999999999999999999999999999874 889999999999999999999 9999999999999999987
Q ss_pred hHHH
Q 043470 372 KEDR 375 (629)
Q Consensus 372 k~~~ 375 (629)
+..+
T Consensus 104 ~~~~ 107 (114)
T 2cq4_A 104 EKNR 107 (114)
T ss_dssp HHHH
T ss_pred CccC
Confidence 6543
No 190
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.4e-16 Score=127.33 Aligned_cols=82 Identities=23% Similarity=0.425 Sum_probs=75.5
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhc-CCceecC
Q 043470 2 AVVPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK-NHTQLHG 80 (629)
Q Consensus 2 ~~~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~l-n~~~i~g 80 (629)
+..|+...+.++|||+|||.++|+++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.| |+..+.|
T Consensus 3 ~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 3 SGSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp CCCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 34566778889999999999999999999999999999999997 3689999999999999999998 9999999
Q ss_pred eeeeeeccC
Q 043470 81 KMLRISWSC 89 (629)
Q Consensus 81 ~~i~I~~s~ 89 (629)
++|+|.|++
T Consensus 77 ~~l~v~~ak 85 (85)
T 2ytc_A 77 RRLNVKWGR 85 (85)
T ss_dssp EECCEEECC
T ss_pred CEEEEEecC
Confidence 999999974
No 191
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=136.50 Aligned_cols=84 Identities=25% Similarity=0.428 Sum_probs=78.4
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhC------CceeCCeE
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFH------GYMLHRKP 363 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~------~~~~~g~~ 363 (629)
..+++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.+| +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457899999999999999999999999999999999985 58899999999999999999999999 99999999
Q ss_pred EEEEeccchHH
Q 043470 364 LYVAIAQRKED 374 (629)
Q Consensus 364 l~v~~a~~k~~ 374 (629)
|.|.++..+..
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999987643
No 192
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=136.89 Aligned_cols=83 Identities=16% Similarity=0.280 Sum_probs=76.4
Q ss_pred cccceeeeecCCCCCCHHHHH---HHHhcCCCeEEEEEeeCCC----CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 043470 291 YKGSNVYVKNIDDDVTDEELK---AHFSQCGTITSAKVMRDEK----GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~---~~F~~~G~v~~~~v~~~~~----g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~ 363 (629)
...++|||+|||+++++++|+ ++|++||.|.+|+++.+.. +.++|||||+|.+.++|.+|++.|||..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356789999999999999999 9999999999999998863 367799999999999999999999999999999
Q ss_pred EEEEeccchH
Q 043470 364 LYVAIAQRKE 373 (629)
Q Consensus 364 l~v~~a~~k~ 373 (629)
|+|.|+..+.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998763
No 193
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=133.33 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=72.5
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEE
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF--HGYMLHRKPLYVA 367 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l--~~~~~~g~~l~v~ 367 (629)
..++++|||+|||+++++++|+++|++||.|++|.++.+ ||||||+|.+.++|.+|++.+ ++..++|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 346789999999999999999999999999999999874 789999999999999999976 5688999999999
Q ss_pred eccchHH
Q 043470 368 IAQRKED 374 (629)
Q Consensus 368 ~a~~k~~ 374 (629)
|++.+..
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9986643
No 194
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=141.26 Aligned_cols=82 Identities=32% Similarity=0.522 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...+.++|||+|||.++|+++|+++|+.||+|.+|+|.+|..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 043470 87 WS 88 (629)
Q Consensus 87 ~s 88 (629)
|+
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 195
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.2e-16 Score=135.29 Aligned_cols=86 Identities=16% Similarity=0.315 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHhcC--CceecCeee
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKS-LASVRVC-KDSTTGRSTCYGYVNFLSPHDAIRAIEVKN--HTQLHGKML 83 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~-V~si~v~-rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln--~~~i~g~~i 83 (629)
..+.++|||+|||.++|+++|+++|+.||. |.+|++. +|..+++++|||||+|.+.++|++|++.|| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 446789999999999999999999999998 9999999 888899999999999999999999999996 589999999
Q ss_pred eeeccCCCCC
Q 043470 84 RISWSCRDPD 93 (629)
Q Consensus 84 ~I~~s~~~~~ 93 (629)
+|.|+.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986644
No 196
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=1.7e-16 Score=139.09 Aligned_cols=81 Identities=31% Similarity=0.608 Sum_probs=75.7
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
...+++|||+|||+++++++|+++|++||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456899999999999999999999999999999999885 689999999999999999999999999999999999999
Q ss_pred cc
Q 043470 369 AQ 370 (629)
Q Consensus 369 a~ 370 (629)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 197
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.9e-16 Score=135.71 Aligned_cols=83 Identities=19% Similarity=0.380 Sum_probs=78.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCC
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR 90 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~ 90 (629)
.++|||+|||.++|+++|+++|+.||.|.+|+|++|..+++++|||||.|.+.++|++||+. ++..|.|+.|+|.|+..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 37999999999999999999999999999999999999999999999999999999999987 99999999999999986
Q ss_pred CCCc
Q 043470 91 DPDA 94 (629)
Q Consensus 91 ~~~~ 94 (629)
....
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 6543
No 198
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=131.34 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCee
Q 043470 7 TATTPASLYVGDLHPDVTDGELF----DAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKM 82 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~----~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~ 82 (629)
+....++|||+|||.++|+++|+ ++|+.||.|.+|+|.+|..+ +|||||+|.+.++|++|++.||+..|.|++
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34456799999999999999999 99999999999999998776 789999999999999999999999999999
Q ss_pred eeeeccCCCC
Q 043470 83 LRISWSCRDP 92 (629)
Q Consensus 83 i~I~~s~~~~ 92 (629)
|+|.|+...+
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999997553
No 199
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=4.5e-16 Score=137.67 Aligned_cols=81 Identities=21% Similarity=0.364 Sum_probs=77.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCC
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR 90 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~ 90 (629)
.++|||+|||.++|+++|+++|+.||.|.+|+|++|..+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.|+..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 479999999999999999999999999999999999999999999999999999999999 7999999999999999875
Q ss_pred CC
Q 043470 91 DP 92 (629)
Q Consensus 91 ~~ 92 (629)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 200
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.9e-17 Score=136.45 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=70.7
Q ss_pred cccceeeeecCCC-CCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 043470 291 YKGSNVYVKNIDD-DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG--YMLHRKPLYVA 367 (629)
Q Consensus 291 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~--~~~~g~~l~v~ 367 (629)
.++++|||+|||+ ++|+++|+++|++||.|++|+|+++ ||||||+|.+.++|.+|++.||+ ..|.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3578999999999 9999999999999999999999875 58999999999999999999886 45999999999
Q ss_pred eccch
Q 043470 368 IAQRK 372 (629)
Q Consensus 368 ~a~~k 372 (629)
+++.+
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99854
No 201
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=6.5e-16 Score=127.48 Aligned_cols=79 Identities=20% Similarity=0.405 Sum_probs=73.3
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
....++|||+|||+++++++|+++|+.||.|.+|+++.++ +|+++|||||+|.+.++|.+|++ +++..++|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3456899999999999999999999999999999999986 59999999999999999999995 588899999999998
Q ss_pred c
Q 043470 369 A 369 (629)
Q Consensus 369 a 369 (629)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 202
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=137.39 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSL-ASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V-~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
.+...++|||+|||.++|+++|+++|+.||.| .+|+|++|. +++++|||||+|.+.++|++||+. |+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 55677899999999999999999999999999 899999998 999999999999999999999987 999999999999
Q ss_pred eccCCC
Q 043470 86 SWSCRD 91 (629)
Q Consensus 86 ~~s~~~ 91 (629)
.|+...
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998643
No 203
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=138.53 Aligned_cols=87 Identities=24% Similarity=0.243 Sum_probs=79.3
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCe----EEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTI----TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v----~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 365 (629)
....++|||+|||+++|+++|+++|+.||.| .+|+|+.+.+|+++|||||+|.+.++|.+|++. |+..++||.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3456899999999999999999999999875 799999999999999999999999999999986 99999999999
Q ss_pred EEeccchHHHHH
Q 043470 366 VAIAQRKEDRQA 377 (629)
Q Consensus 366 v~~a~~k~~~~~ 377 (629)
|..+..++.++.
T Consensus 99 V~~a~~~e~~~~ 110 (123)
T 2dha_A 99 LFRSTAAEVQQV 110 (123)
T ss_dssp CEEECHHHHHHH
T ss_pred EEECCHHHHHHH
Confidence 999987766554
No 204
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.65 E-value=1.3e-16 Score=142.04 Aligned_cols=84 Identities=23% Similarity=0.364 Sum_probs=78.5
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
...+++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|||..|+|++|+|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999985 688999999999999999999999999999999999999
Q ss_pred ccchH
Q 043470 369 AQRKE 373 (629)
Q Consensus 369 a~~k~ 373 (629)
+..+.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98764
No 205
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=5.6e-17 Score=134.87 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=74.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCCC
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCRD 91 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~~ 91 (629)
++|||+|||.++|+++|+++|+.||+|.+|++++|..+++++|||||+|.+.+ |++|++.||+..+.|++|+|.|+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999998765
Q ss_pred C
Q 043470 92 P 92 (629)
Q Consensus 92 ~ 92 (629)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 206
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.2e-16 Score=135.42 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCC--ceecCeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH--TQLHGKMLR 84 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~--~~i~g~~i~ 84 (629)
...++++|||+|||+++||++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.|++ ..|.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 5567889999999999999999999999999999999975 58999999999999999998874 579999999
Q ss_pred eeccCCCCCcc
Q 043470 85 ISWSCRDPDAR 95 (629)
Q Consensus 85 I~~s~~~~~~~ 95 (629)
|.|+.......
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998665433
No 207
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=5.4e-16 Score=132.41 Aligned_cols=82 Identities=27% Similarity=0.444 Sum_probs=76.2
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
....++|||+|||+++++++|+++|+.|| |.+|+++.+. +|+++|||||+|.+.++|.+|+ .||+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999997 9999999997 5899999999999999999999 8999999999999999
Q ss_pred ccchH
Q 043470 369 AQRKE 373 (629)
Q Consensus 369 a~~k~ 373 (629)
+..+.
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98653
No 208
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=137.08 Aligned_cols=85 Identities=32% Similarity=0.527 Sum_probs=78.8
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeE--------EEEEeeC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTIT--------SAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~--------~~~v~~~-~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~ 360 (629)
....++|||+|||+++|+++|+++|+.||.|. .|+|+.+ .+|.++|||||+|.+.++|.+|++.|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34678999999999999999999999999999 6999998 57999999999999999999999999999999
Q ss_pred CeEEEEEeccchHH
Q 043470 361 RKPLYVAIAQRKED 374 (629)
Q Consensus 361 g~~l~v~~a~~k~~ 374 (629)
|+.|+|.+++.+..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999986643
No 209
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=134.73 Aligned_cols=83 Identities=25% Similarity=0.410 Sum_probs=77.1
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC--CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK--GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~--g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
....++|||+|||+++++++|+++|+.|| |.+|+|+.++. |.++|||||+|.+.++|.+|+ .||+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 99999999874 899999999999999999999 999999999999999
Q ss_pred eccchHH
Q 043470 368 IAQRKED 374 (629)
Q Consensus 368 ~a~~k~~ 374 (629)
++..+..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987643
No 210
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=137.99 Aligned_cols=80 Identities=21% Similarity=0.354 Sum_probs=73.2
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG--YMLHRKPLYVA 367 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~--~~~~g~~l~v~ 367 (629)
..++++|||+|||+++|+++|+++|++||.|++|+|+.+ ||||||+|.+.++|.+|++.+++ ..|+|++|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 446789999999999999999999999999999999975 79999999999999999998874 68999999999
Q ss_pred eccchHH
Q 043470 368 IAQRKED 374 (629)
Q Consensus 368 ~a~~k~~ 374 (629)
|++.++.
T Consensus 103 ~a~~k~~ 109 (119)
T 2ad9_A 103 FSNHKEL 109 (119)
T ss_dssp ECSSSSC
T ss_pred EccCCCC
Confidence 9987654
No 211
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.9e-16 Score=131.66 Aligned_cols=85 Identities=20% Similarity=0.361 Sum_probs=77.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
+....+.++|||+|||.++|+++|+++|+.||.| +++++ .+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 4456678999999999999999999999999976 67777 7888999999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 043470 85 ISWSCRDPD 93 (629)
Q Consensus 85 I~~s~~~~~ 93 (629)
|.|+.....
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999986644
No 212
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=2.3e-16 Score=135.99 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
.++..++|||+|||+++|+++|+++|+.|| .|..|+|..+ +++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 8999988632 47899999999999999999999999999999999
Q ss_pred eccCCCCCcc
Q 043470 86 SWSCRDPDAR 95 (629)
Q Consensus 86 ~~s~~~~~~~ 95 (629)
.|+...+..+
T Consensus 100 ~~a~~~p~~r 109 (111)
T 2jvr_A 100 ERDDNPPPIR 109 (111)
T ss_dssp EESCC-----
T ss_pred EECCCCCCCC
Confidence 9998665443
No 213
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=134.97 Aligned_cols=83 Identities=23% Similarity=0.357 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
.....++|||+|||.++|+++|+++|+.||.|.+|++++|. ++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 55567899999999999999999999999999999999985 3589999999999999999999999999999999999
Q ss_pred ccCCC
Q 043470 87 WSCRD 91 (629)
Q Consensus 87 ~s~~~ 91 (629)
|+...
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98754
No 214
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=142.19 Aligned_cols=84 Identities=30% Similarity=0.464 Sum_probs=78.5
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+||++++++++|+++|+.||.|++|+++.++ +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 346799999999999999999999999999999999986 5889999999999999999999999999999999999999
Q ss_pred cchHH
Q 043470 370 QRKED 374 (629)
Q Consensus 370 ~~k~~ 374 (629)
+.+..
T Consensus 120 ~~~~~ 124 (139)
T 1u6f_A 120 ASGHQ 124 (139)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 215
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.9e-16 Score=132.41 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLAS-VRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~s-i~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
+....++|||+|||+++||++|+++|+.||.|.+ |+|++| .+++++|||||+|.+.++|++||+. |+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 4456789999999999999999999999999987 999998 8899999999999999999999997 999999999999
Q ss_pred eccCCCC
Q 043470 86 SWSCRDP 92 (629)
Q Consensus 86 ~~s~~~~ 92 (629)
.++.+..
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9887553
No 216
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=139.18 Aligned_cols=85 Identities=27% Similarity=0.421 Sum_probs=76.7
Q ss_pred cccceeeeecCCCCCCHHHHH----HHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 043470 291 YKGSNVYVKNIDDDVTDEELK----AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 366 (629)
..+++|||+||++.+++++|+ ++|++||.|.+|.+.. +|++||||||+|.+.++|.+|++.|||..|.|++|+|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 457899999999999999876 6999999999988864 5889999999999999999999999999999999999
Q ss_pred EeccchHHHHH
Q 043470 367 AIAQRKEDRQA 377 (629)
Q Consensus 367 ~~a~~k~~~~~ 377 (629)
.|++.+.....
T Consensus 105 ~~a~~~~~~~~ 115 (127)
T 2a3j_A 105 TFSETPQSQVA 115 (127)
T ss_dssp EECCCCCHHHH
T ss_pred EEccCcchhcc
Confidence 99998766543
No 217
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=1.4e-16 Score=127.61 Aligned_cols=74 Identities=28% Similarity=0.445 Sum_probs=70.8
Q ss_pred eeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
+|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++ +|+..++|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999986 78999999999999999999997 9999999999999876
No 218
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.8e-16 Score=135.31 Aligned_cols=82 Identities=23% Similarity=0.533 Sum_probs=77.2
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee--------CCe
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML--------HRK 362 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~--------~g~ 362 (629)
...++|||+|||+++|+++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 356899999999999999999999999999999999999999999999999999999999999999999 688
Q ss_pred EEEEEeccch
Q 043470 363 PLYVAIAQRK 372 (629)
Q Consensus 363 ~l~v~~a~~k 372 (629)
+|.|.|+.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999754
No 219
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.7e-16 Score=135.37 Aligned_cols=84 Identities=21% Similarity=0.411 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHhcCCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHhcCCceecCee
Q 043470 9 TTPASLYVGDLHPDVTDGELF---DAFSEFKSLASVRVCKDSTTG---RSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKM 82 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~---~~Fs~~G~V~si~v~rd~~t~---~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~ 82 (629)
...++|||+|||+++||++|+ ++|++||+|.+|+|.+|..++ +++|||||+|.+.++|++|++.||+..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456799999999999999999 999999999999999987754 56699999999999999999999999999999
Q ss_pred eeeeccCCCC
Q 043470 83 LRISWSCRDP 92 (629)
Q Consensus 83 i~I~~s~~~~ 92 (629)
|+|.|+...+
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 220
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=6.5e-17 Score=137.36 Aligned_cols=82 Identities=23% Similarity=0.391 Sum_probs=74.7
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC--CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE--KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~--~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
....++|||+||++++++++|+++|+.|| |.+|+++.+. +|+++|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999986 7999999999999999999999 899999999999999
Q ss_pred eccchH
Q 043470 368 IAQRKE 373 (629)
Q Consensus 368 ~a~~k~ 373 (629)
+++.+.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998653
No 221
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.3e-16 Score=130.64 Aligned_cols=86 Identities=26% Similarity=0.473 Sum_probs=78.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
....+.++|||+|||.++|+++|+++|+.| .+|++++|..+++++|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 356677899999999999999999999976 48899999999999999999999999999999999999999999999
Q ss_pred eccCCCCCc
Q 043470 86 SWSCRDPDA 94 (629)
Q Consensus 86 ~~s~~~~~~ 94 (629)
.|+......
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999876543
No 222
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-16 Score=132.97 Aligned_cols=82 Identities=21% Similarity=0.277 Sum_probs=75.4
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~-~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++++++|+++|+.||.|.+++++.+ .+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999999998877776 47889999999999999999999999999999999999998
Q ss_pred cch
Q 043470 370 QRK 372 (629)
Q Consensus 370 ~~k 372 (629)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 223
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=131.69 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=76.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC---
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG--- 80 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g--- 80 (629)
.|+.....++|||+|||.++|+++|+++|+.||.|.+|+|++| |||||+|.+.++|++||+.||+..|.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 8 GPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp SCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 3556677899999999999999999999999999999999987 799999999999999999999999999
Q ss_pred --eeeeeeccCCCC
Q 043470 81 --KMLRISWSCRDP 92 (629)
Q Consensus 81 --~~i~I~~s~~~~ 92 (629)
+.|+|.|+....
T Consensus 81 ~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 81 ETAYIRVKVDGPRS 94 (108)
T ss_dssp CEEEEEEEESSCCS
T ss_pred cceEEEEEeCCCCC
Confidence 999999998654
No 224
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-16 Score=134.42 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=74.2
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++|+++|+++|+.||.| +|+|+.|++|++||||||+|.+.++|.+|+ .+|+..|+|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 356789999999999999999999999955 999999999999999999999999999999 589999999999999987
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 225
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=2.7e-16 Score=132.13 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=73.5
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..++|||+|||+++++++|+++|+.||.|.+++++.+. +|+++|||||+|.+.++|.+|++.||+..|+|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45799999999999999999999999999988888764 68899999999999999999999999999999999999986
Q ss_pred c
Q 043470 371 R 371 (629)
Q Consensus 371 ~ 371 (629)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 226
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=132.80 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc--eecCeee
Q 043470 7 TATTPASLYVGDLHP-DVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT--QLHGKML 83 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~-~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~--~i~g~~i 83 (629)
...++++|||+|||+ ++||++|+++|++||.|.+|+|.++ +|||||+|.+.++|++|++.||+. .|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345788999999999 9999999999999999999999875 379999999999999999998864 5999999
Q ss_pred eeeccCCCCCc
Q 043470 84 RISWSCRDPDA 94 (629)
Q Consensus 84 ~I~~s~~~~~~ 94 (629)
+|.|+......
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 1x4d_A 85 RVHLSQKYKRI 95 (102)
T ss_dssp EEEEECCCTTS
T ss_pred EEEECCCCCCC
Confidence 99999865433
No 227
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=133.95 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=77.9
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
....++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++. |+..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999984 789999999999999999999998 99999999999999
Q ss_pred ccchHH
Q 043470 369 AQRKED 374 (629)
Q Consensus 369 a~~k~~ 374 (629)
+..+..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 986643
No 228
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=138.77 Aligned_cols=86 Identities=17% Similarity=0.233 Sum_probs=77.5
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEE-EEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITS-AKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++|+++|+++|+.||.|.+ +.+..+.+|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 35689999999999999999999999999988 555556789999999999999999999999 9999999999999999
Q ss_pred cchHHHHH
Q 043470 370 QRKEDRQA 377 (629)
Q Consensus 370 ~~k~~~~~ 377 (629)
..++....
T Consensus 102 ~~~~~~~~ 109 (124)
T 1wel_A 102 TKKGMLEK 109 (124)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98776543
No 229
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=126.99 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=73.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
+..+.++|||+|||.++|+++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678899999999999999999999999999999997 3699999999999999999999999999999999
Q ss_pred ccCCCCCc
Q 043470 87 WSCRDPDA 94 (629)
Q Consensus 87 ~s~~~~~~ 94 (629)
|+......
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99866543
No 230
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-16 Score=136.41 Aligned_cols=78 Identities=23% Similarity=0.271 Sum_probs=75.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCC
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR 90 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~ 90 (629)
++|||+|||.++|+++|+++|+.||.|.+|+|++|..+++++|||||+|.+.++|++|| .||+..|.|+.|+|.|+..
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 69999999999999999999999999999999999999999999999999999999999 8999999999999999864
No 231
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=3.7e-16 Score=139.82 Aligned_cols=82 Identities=16% Similarity=0.172 Sum_probs=76.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKS---LASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKM 82 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~---V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~ 82 (629)
++....++|||+|||+++||++|+++|+.||. |.+|+|++|.. ++++|||||+|.+.++|++||+ ||+..|.|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34556789999999999999999999999999 89999999987 9999999999999999999999 9999999999
Q ss_pred eeeeccC
Q 043470 83 LRISWSC 89 (629)
Q Consensus 83 i~I~~s~ 89 (629)
|+|.++.
T Consensus 117 i~V~~a~ 123 (136)
T 2hgl_A 117 IEVFKSH 123 (136)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9999875
No 232
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=2.5e-16 Score=135.23 Aligned_cols=83 Identities=24% Similarity=0.471 Sum_probs=77.5
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCcee---CCeEEEE
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYML---HRKPLYV 366 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~---~g~~l~v 366 (629)
...++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.||+..+ .|++|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 456899999999999999999999999999999999986 589999999999999999999999999987 8999999
Q ss_pred EeccchH
Q 043470 367 AIAQRKE 373 (629)
Q Consensus 367 ~~a~~k~ 373 (629)
.++..+.
T Consensus 91 ~~a~~~~ 97 (106)
T 2dgp_A 91 KPADSES 97 (106)
T ss_dssp EECCCCS
T ss_pred EECCccc
Confidence 9998654
No 233
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.64 E-value=6.8e-16 Score=143.72 Aligned_cols=87 Identities=20% Similarity=0.421 Sum_probs=80.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...++++|||+|||.++|+++|+++|+.||.|.+|+|+++..|++++|||||.|.+.++|++||+.||+..|.|++|+|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 043470 87 WSCRDPD 93 (629)
Q Consensus 87 ~s~~~~~ 93 (629)
|+...+.
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9976543
No 234
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=129.18 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcC--CceecCeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKN--HTQLHGKMLR 84 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln--~~~i~g~~i~ 84 (629)
...++++|||+|||.++||++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.|+ +..|.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 5567789999999999999999999999999999999875 6899999999999999999774 6789999999
Q ss_pred eeccCCCCC
Q 043470 85 ISWSCRDPD 93 (629)
Q Consensus 85 I~~s~~~~~ 93 (629)
|.|+.....
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999986543
No 235
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=4.1e-16 Score=136.57 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKS---LASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~---V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
.....++|||+|||+++||++|+++|+.||. |.+|+|++|.. ++++|||||+|.+.++|++||+ +|+..|.|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 4456789999999999999999999999998 89999999976 8999999999999999999999 89999999999
Q ss_pred eeeccCC
Q 043470 84 RISWSCR 90 (629)
Q Consensus 84 ~I~~s~~ 90 (629)
+|.++.+
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998763
No 236
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.6e-16 Score=134.60 Aligned_cols=82 Identities=23% Similarity=0.274 Sum_probs=76.6
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEE-EEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITS-AKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++|+++|+++|+.||.|.+ |+|+.+.+|+++|||||+|.+.++|.+|++. |+..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 35689999999999999999999999999987 9999999999999999999999999999987 999999999999998
Q ss_pred cchH
Q 043470 370 QRKE 373 (629)
Q Consensus 370 ~~k~ 373 (629)
..++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 237
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=3.1e-16 Score=132.31 Aligned_cols=85 Identities=20% Similarity=0.337 Sum_probs=75.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELF----DAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG 80 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~----~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g 80 (629)
+++..++++|||+|||.++|+++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|++|++.||+..|.|
T Consensus 2 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 2 VPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp ----CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 3466788999999999999999999 9999999999999874 56788999999999999999999999999999
Q ss_pred eeeeeeccCCCC
Q 043470 81 KMLRISWSCRDP 92 (629)
Q Consensus 81 ~~i~I~~s~~~~ 92 (629)
++|+|.|+..+.
T Consensus 79 ~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 KPMRIQYAKTDS 90 (97)
T ss_dssp EECEEEECSSCC
T ss_pred cEEEEEEccCCC
Confidence 999999998764
No 238
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=3.7e-16 Score=138.63 Aligned_cols=85 Identities=22% Similarity=0.423 Sum_probs=79.0
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
...+++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456899999999999999999999999999999999986 889999999999999999999999999999999999999
Q ss_pred ccchHH
Q 043470 369 AQRKED 374 (629)
Q Consensus 369 a~~k~~ 374 (629)
+..+..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 976543
No 239
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.5e-16 Score=133.33 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=74.6
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++|+++|+++|+.||.|.+|++..+ +.++|||||+|.+.++|.+|++.||+..|+|+.|.|.|++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 35689999999999999999999999999999999765 5689999999999999999999999999999999999997
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
.+
T Consensus 98 ~~ 99 (109)
T 1x4a_A 98 SG 99 (109)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 240
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=135.65 Aligned_cols=80 Identities=28% Similarity=0.393 Sum_probs=74.7
Q ss_pred ccceeeeecCCCCC------CHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 043470 292 KGSNVYVKNIDDDV------TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK-PL 364 (629)
Q Consensus 292 ~~~~l~V~nl~~~~------t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~-~l 364 (629)
.+++|||+|||+.+ |+++|+++|+.||.|.+|+++ ..+|.++|||||+|.+.++|.+|+..|||..|+|+ +|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 46799999999999 789999999999999999998 56889999999999999999999999999999998 99
Q ss_pred EEEeccch
Q 043470 365 YVAIAQRK 372 (629)
Q Consensus 365 ~v~~a~~k 372 (629)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99999754
No 241
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=5e-16 Score=133.09 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCC------CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC
Q 043470 7 TATTPASLYVGDLHPDV------TDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG 80 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~------te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g 80 (629)
+...+++|||+|||.++ |+++|+++|+.||.|.+|+|.+ .+++++|||||+|.+.++|++|++.||+..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 45557899999999999 7899999999999999999984 678999999999999999999999999999999
Q ss_pred e-eeeeeccCC
Q 043470 81 K-MLRISWSCR 90 (629)
Q Consensus 81 ~-~i~I~~s~~ 90 (629)
+ +|+|.|+..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999864
No 242
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.4e-16 Score=134.98 Aligned_cols=82 Identities=23% Similarity=0.391 Sum_probs=76.4
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
....++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.+++ .|+|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 3456899999999999999999999999999999999985 689999999999999999999999998 89999999999
Q ss_pred ccch
Q 043470 369 AQRK 372 (629)
Q Consensus 369 a~~k 372 (629)
+..+
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9654
No 243
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=129.50 Aligned_cols=74 Identities=30% Similarity=0.448 Sum_probs=68.6
Q ss_pred cceeeeecCCCCC------CHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe-EEE
Q 043470 293 GSNVYVKNIDDDV------TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK-PLY 365 (629)
Q Consensus 293 ~~~l~V~nl~~~~------t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~-~l~ 365 (629)
+++|||+|||+.+ ++++|+++|++||.|.+|+++ ..+|+++|||||+|.+.++|.+|++.|||..++|+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3689999999999 679999999999999999988 56889999999999999999999999999999999 887
Q ss_pred EE
Q 043470 366 VA 367 (629)
Q Consensus 366 v~ 367 (629)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 244
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=8.5e-16 Score=135.90 Aligned_cols=78 Identities=28% Similarity=0.553 Sum_probs=74.4
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
.++|||+||++++|+++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 4689999999999999999999999999999999984 7899999999999999999999 8999999999999999874
No 245
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=137.19 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=78.7
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCC---eEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGT---ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
..+++|||+|||+++|+++|+++|+.||. |.+|+|+.+++|+++|||||+|.+.++|.+|++ +|+..++|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35688999999999999999999999998 999999999999999999999999999999999 99999999999999
Q ss_pred eccchHHH
Q 043470 368 IAQRKEDR 375 (629)
Q Consensus 368 ~a~~k~~~ 375 (629)
++..++..
T Consensus 88 ~a~~~~~~ 95 (107)
T 2lmi_A 88 EINNEDVD 95 (107)
T ss_dssp ECCHHHHH
T ss_pred ECCHHHHH
Confidence 99876644
No 246
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=131.78 Aligned_cols=84 Identities=25% Similarity=0.503 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
+....++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||.|.+.++|++|++.||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556789999999999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred ccCCCCCccc
Q 043470 87 WSCRDPDARK 96 (629)
Q Consensus 87 ~s~~~~~~~~ 96 (629)
|+...+....
T Consensus 95 ~a~~~~~~~~ 104 (109)
T 1x4g_A 95 WGKESPDMTS 104 (109)
T ss_dssp CCCCCCSSCC
T ss_pred ecCCCCCCCC
Confidence 9988765443
No 247
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=4.4e-16 Score=126.73 Aligned_cols=73 Identities=16% Similarity=0.320 Sum_probs=68.6
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCe-ee
Q 043470 11 PASLYVGDLHPDV------TDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGK-ML 83 (629)
Q Consensus 11 ~~sLyV~nLp~~~------te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~-~i 83 (629)
+++|||+|||.++ |+++|+++|++||+|.+|++.+ .+++++|||||+|.+.++|++|++.||+..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 7899999999999999999884 5789999999999999999999999999999999 88
Q ss_pred ee
Q 043470 84 RI 85 (629)
Q Consensus 84 ~I 85 (629)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 87
No 248
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=4e-16 Score=134.62 Aligned_cols=83 Identities=25% Similarity=0.409 Sum_probs=74.7
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
..+++|||+||++++|+++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 356899999999999999999999999999999999986 5899999999999999999999976 59999999999999
Q ss_pred cchHH
Q 043470 370 QRKED 374 (629)
Q Consensus 370 ~~k~~ 374 (629)
..+..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86643
No 249
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-16 Score=131.12 Aligned_cols=80 Identities=28% Similarity=0.414 Sum_probs=75.0
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
..+++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 356899999999999999999999999999999999985 6899999999999999999999999999999999988876
Q ss_pred c
Q 043470 370 Q 370 (629)
Q Consensus 370 ~ 370 (629)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 250
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=7e-16 Score=142.26 Aligned_cols=84 Identities=25% Similarity=0.324 Sum_probs=78.6
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999987 5889999999999999999999999999999999999999
Q ss_pred cchHH
Q 043470 370 QRKED 374 (629)
Q Consensus 370 ~~k~~ 374 (629)
..+..
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86543
No 251
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=128.05 Aligned_cols=81 Identities=23% Similarity=0.394 Sum_probs=74.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceec--Ceee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLH--GKML 83 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~--g~~i 83 (629)
....++++|||+|||.++||++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.||+..|. |+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 35566789999999999999999999999999999999864 579999999999999999999999999 9999
Q ss_pred eeeccCCCC
Q 043470 84 RISWSCRDP 92 (629)
Q Consensus 84 ~I~~s~~~~ 92 (629)
+|.|+...+
T Consensus 86 ~V~~a~~~~ 94 (97)
T 1why_A 86 RVDFAKSGP 94 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998654
No 252
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=129.24 Aligned_cols=82 Identities=28% Similarity=0.409 Sum_probs=75.7
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++ ++..++|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 456889999999999999999999999999999999986 69999999999999999999998 577999999999999
Q ss_pred cchHH
Q 043470 370 QRKED 374 (629)
Q Consensus 370 ~~k~~ 374 (629)
..+..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 87643
No 253
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.1e-16 Score=132.95 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=71.2
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEEEe
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGY--MLHRKPLYVAI 368 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~~ 368 (629)
.++++|||+|||+++++++|+++|++||.|.+|.++.+ ||||||+|.+.++|.+|++.|++. .++|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 35679999999999999999999999999999999864 789999999999999999988754 59999999999
Q ss_pred ccchHH
Q 043470 369 AQRKED 374 (629)
Q Consensus 369 a~~k~~ 374 (629)
++.+..
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 986643
No 254
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=7.1e-17 Score=173.15 Aligned_cols=82 Identities=16% Similarity=0.387 Sum_probs=77.4
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..++|||+||++++|+++|+++|+.||.|+.|+|+.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999985 78999999999999999999999999999999999999998
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
.+.
T Consensus 181 ~~~ 183 (437)
T 3pgw_S 181 GRT 183 (437)
T ss_pred CCC
Confidence 653
No 255
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=7e-16 Score=131.16 Aligned_cols=79 Identities=23% Similarity=0.419 Sum_probs=73.6
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++|+++|+++|+.||.| +++.+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 356899999999999999999999999977 67777789999999999999999999999999999999999999997
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
.+
T Consensus 90 ~~ 91 (101)
T 2fc9_A 90 PR 91 (101)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 256
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=2.4e-16 Score=126.12 Aligned_cols=75 Identities=17% Similarity=0.355 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 13 sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
+|||+|||.++|+++|+++|+.||+|.+|++.+|..+++++|||||+|.+.++|++|++. ++..+.|+.|+|.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999985 888999999999874
No 257
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=132.00 Aligned_cols=82 Identities=23% Similarity=0.339 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee--------
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQL-------- 78 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i-------- 78 (629)
.....++|||+|||.++|+++|+++|+.||.|.+|+|++|. +++++|||||.|.+.++|++|++.||+..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred cCeeeeeeccC
Q 043470 79 HGKMLRISWSC 89 (629)
Q Consensus 79 ~g~~i~I~~s~ 89 (629)
.+++|+|.|+.
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 57788888876
No 258
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6.9e-16 Score=132.65 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
....++|||+|||+++||++|+++|+.| .|.+|+|++|.. ++++|||||+|.+.++|++|| .+|+..|.|+.|+|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3345699999999999999999999999 899999999965 899999999999999999999 6899999999999987
Q ss_pred cC
Q 043470 88 SC 89 (629)
Q Consensus 88 s~ 89 (629)
+.
T Consensus 90 a~ 91 (109)
T 2dnn_A 90 AT 91 (109)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 259
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=5.7e-16 Score=133.49 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=71.9
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCC-CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCG-TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
.+++|||+|||+++++++|+++|+.|| .|..++|..+ .++|||||+|.+.++|.+|++.|||..|+|+.|+|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 467999999999999999999999999 9999998643 489999999999999999999999999999999999997
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 260
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=1e-16 Score=143.31 Aligned_cols=81 Identities=19% Similarity=0.427 Sum_probs=76.6
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEE--EEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITS--AKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGY----MLHRKP 363 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~----~~~g~~ 363 (629)
...++|||+||++++|+++|+++|+.||.|.+ |+|+.|+ +|++||||||+|.+. +|.+|+..|||. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45678999999999999999999999999977 9999998 899999999999999 999999999999 999999
Q ss_pred EEEEeccch
Q 043470 364 LYVAIAQRK 372 (629)
Q Consensus 364 l~v~~a~~k 372 (629)
|+|.+++.+
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999865
No 261
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=128.45 Aligned_cols=81 Identities=28% Similarity=0.504 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...+.++|||+|||.++|+++|+++|+.||+|.+|++.++ +|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 5567789999999999999999999999999999999864 6899999999999999999999999999999999
Q ss_pred ccCCCCC
Q 043470 87 WSCRDPD 93 (629)
Q Consensus 87 ~s~~~~~ 93 (629)
|+.....
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9987643
No 262
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.3e-15 Score=129.44 Aligned_cols=78 Identities=15% Similarity=0.333 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
.+..+++|||+|||.++|+++|+++|+.||.|.+|++.+ ++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344578999999999999999999999999999999983 67899999999999999999999999999999999
Q ss_pred ccCC
Q 043470 87 WSCR 90 (629)
Q Consensus 87 ~s~~ 90 (629)
|+..
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9864
No 263
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=1.8e-16 Score=131.85 Aligned_cols=80 Identities=30% Similarity=0.448 Sum_probs=72.3
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.+ |.+|+..|||..++|+.|+|.+|..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999999986 5899999999999999 99999999999999999999999765
Q ss_pred HH
Q 043470 373 ED 374 (629)
Q Consensus 373 ~~ 374 (629)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 264
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-16 Score=135.24 Aligned_cols=84 Identities=29% Similarity=0.438 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
.....++|||+|||.++|+++|+++|+.||.|.+ ++++|..+++++|||||+|.+.++|++|++ ||+..|.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999999988 777888889999999999999999999998 99999999999999
Q ss_pred ccCCCC
Q 043470 87 WSCRDP 92 (629)
Q Consensus 87 ~s~~~~ 92 (629)
|+....
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 997653
No 265
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.1e-16 Score=126.16 Aligned_cols=75 Identities=27% Similarity=0.442 Sum_probs=71.7
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
++|||+|||+++++++|+++|++||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.++ ..++|++|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999986 68999999999999999999999999 9999999999987
No 266
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=4.5e-16 Score=131.25 Aligned_cols=84 Identities=27% Similarity=0.489 Sum_probs=77.0
Q ss_pred hcccceeeeecCCCCCCHHHHH----HHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 043470 290 KYKGSNVYVKNIDDDVTDEELK----AHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 365 (629)
...+++|||+|||+++++++|+ ++|+.||.|.+|+++. +|.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 3467899999999999999999 9999999999999984 477899999999999999999999999999999999
Q ss_pred EEeccchHHH
Q 043470 366 VAIAQRKEDR 375 (629)
Q Consensus 366 v~~a~~k~~~ 375 (629)
|.+++.+...
T Consensus 83 v~~a~~~~~~ 92 (97)
T 1nu4_A 83 IQYAKTDSDI 92 (97)
T ss_dssp EEECSSCCTH
T ss_pred EEEccCCCcc
Confidence 9999877654
No 267
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=8.8e-16 Score=130.56 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=72.0
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..+++|||+||++++++++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|+..|||..++|+.|+|.|++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 346899999999999999999999999999999998 368999999999999999999999999999999999997
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
.+
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 268
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.1e-16 Score=134.01 Aligned_cols=82 Identities=27% Similarity=0.430 Sum_probs=76.4
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|++. ++..|+|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 34789999999999999999999999999999999985 589999999999999999999987 9999999999999998
Q ss_pred chHH
Q 043470 371 RKED 374 (629)
Q Consensus 371 ~k~~ 374 (629)
.+..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7643
No 269
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-16 Score=135.85 Aligned_cols=87 Identities=24% Similarity=0.373 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...++++|||+|||.++|+++|+++|+.||.|.+|.+..+..+++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45567899999999999999999999999999544333333488899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 043470 87 WSCRDPD 93 (629)
Q Consensus 87 ~s~~~~~ 93 (629)
|+.....
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9986543
No 270
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=124.62 Aligned_cols=81 Identities=26% Similarity=0.470 Sum_probs=74.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
++.....++|||+|||.++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 456677899999999999999999999999999999999854 999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 043470 85 ISWSCRDPD 93 (629)
Q Consensus 85 I~~s~~~~~ 93 (629)
|.|+.....
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 999986543
No 271
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=1.1e-15 Score=133.37 Aligned_cols=81 Identities=21% Similarity=0.353 Sum_probs=75.2
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..+++|||+|||+++++++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|.|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 45689999999999999999999999999999999976 5679999999999999999999999999999999999998
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
.+.
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 543
No 272
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-16 Score=137.67 Aligned_cols=83 Identities=13% Similarity=0.245 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
.....++|||+|||+++||++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|++||+ ||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34456899999999999999999999999999987777777899999999999999999999999 99999999999999
Q ss_pred ccCC
Q 043470 87 WSCR 90 (629)
Q Consensus 87 ~s~~ 90 (629)
|+..
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8764
No 273
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.5e-17 Score=142.41 Aligned_cols=90 Identities=21% Similarity=0.355 Sum_probs=83.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLAS--------VRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQL 78 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~s--------i~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i 78 (629)
+..+.++|||+|||.++|+++|+++|+.||.|.+ |+|++|..+++++|||||+|.+.++|++|++.||+..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567889999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred cCeeeeeeccCCCCCccc
Q 043470 79 HGKMLRISWSCRDPDARK 96 (629)
Q Consensus 79 ~g~~i~I~~s~~~~~~~~ 96 (629)
.|++|+|.|+...+....
T Consensus 83 ~g~~l~V~~a~~~~~~~~ 100 (116)
T 2lcw_A 83 SGNPIKVSFATRRADFNR 100 (116)
Confidence 999999999987654433
No 274
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=6.1e-16 Score=133.04 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=77.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKS---LASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKM 82 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~---V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~ 82 (629)
......++|||+|||+++|+++|+++|+.||. |.+|+|++|.. ++++|||||+|.+.++|++||+ +|+..+.|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 35567789999999999999999999999988 99999999977 9999999999999999999999 8999999999
Q ss_pred eeeeccCC
Q 043470 83 LRISWSCR 90 (629)
Q Consensus 83 i~I~~s~~ 90 (629)
|+|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99998763
No 275
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=2.4e-15 Score=129.46 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
....+++|||+|||.++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 55677899999999999999999999999999999998 5799999999999999999999999999999999
Q ss_pred ccCCCC
Q 043470 87 WSCRDP 92 (629)
Q Consensus 87 ~s~~~~ 92 (629)
|+...+
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 988654
No 276
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=124.57 Aligned_cols=80 Identities=24% Similarity=0.367 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 6 PTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
....+.++|||+|||.++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567889999999999999999999999999999999864 9999999999999999999999999999999
Q ss_pred eccCCCCC
Q 043470 86 SWSCRDPD 93 (629)
Q Consensus 86 ~~s~~~~~ 93 (629)
.|+.....
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99986643
No 277
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=129.96 Aligned_cols=75 Identities=24% Similarity=0.353 Sum_probs=71.5
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEEE
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR-----KPLYV 366 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g-----~~l~v 366 (629)
..++|||+|||+++|+++|+++|+.||.|.+|+|+.+ |||||+|.+.++|.+|++.||+..|+| +.|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4689999999999999999999999999999999986 799999999999999999999999999 99999
Q ss_pred Eeccch
Q 043470 367 AIAQRK 372 (629)
Q Consensus 367 ~~a~~k 372 (629)
.+++++
T Consensus 88 ~~a~~~ 93 (108)
T 1x4c_A 88 KVDGPR 93 (108)
T ss_dssp EESSCC
T ss_pred EeCCCC
Confidence 999874
No 278
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.61 E-value=1.2e-15 Score=149.59 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFK--SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G--~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
..++|||+||++++||++|+++|+.|| .|.+|+|++|+.|++++|||||.|.+.++|++||+.||+..|.|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 043470 88 SCR 90 (629)
Q Consensus 88 s~~ 90 (629)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 863
No 279
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=1.4e-15 Score=130.95 Aligned_cols=80 Identities=29% Similarity=0.524 Sum_probs=72.8
Q ss_pred hhcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 289 LKYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 289 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
....+++|||+||++++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++.|||..++|+.|.|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred ccchHHH
Q 043470 369 AQRKEDR 375 (629)
Q Consensus 369 a~~k~~~ 375 (629)
++.+..+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9876543
No 280
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=128.11 Aligned_cols=78 Identities=18% Similarity=0.372 Sum_probs=72.6
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEe
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH--RKPLYVAI 368 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~ 368 (629)
...++|||+|||+++|+++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++.||+..++ |+.|+|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 35689999999999999999999999999999999864 789999999999999999999999999 99999999
Q ss_pred ccchH
Q 043470 369 AQRKE 373 (629)
Q Consensus 369 a~~k~ 373 (629)
++.+.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98653
No 281
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.7e-16 Score=132.23 Aligned_cols=84 Identities=20% Similarity=0.255 Sum_probs=75.8
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCC-eEEEEEe-eCC-CCCeeeEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGT-ITSAKVM-RDE-KGINKGFGFVCFSSPEEASKAVNTFH--GYMLHRKPLY 365 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-v~~~~v~-~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~--~~~~~g~~l~ 365 (629)
...++|||+|||+++|+++|+++|+.||. |.+|.++ .+. +|.++|||||+|.+.++|.+|++.|| +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35679999999999999999999999998 9999998 554 57899999999999999999999996 5899999999
Q ss_pred EEeccchHH
Q 043470 366 VAIAQRKED 374 (629)
Q Consensus 366 v~~a~~k~~ 374 (629)
|.|+..+..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999986543
No 282
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.3e-16 Score=134.54 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=71.6
Q ss_pred hcccceeeeecCCCC-CCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 043470 290 KYKGSNVYVKNIDDD-VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH--GYMLHRKPLYV 366 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~--~~~~~g~~l~v 366 (629)
...+++|||+|||++ +++++|+++|++||.|.+|+|++ +||||||+|.+.++|.+|++.|| +..|+|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999998 99999999999999999999975 47999999999999999999886 45699999999
Q ss_pred EeccchHH
Q 043470 367 AIAQRKED 374 (629)
Q Consensus 367 ~~a~~k~~ 374 (629)
.|++.+..
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99986643
No 283
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=125.59 Aligned_cols=76 Identities=24% Similarity=0.505 Sum_probs=71.4
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++++++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++.||+..++|+.|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 356899999999999999999999999999999997 5799999999999999999999999999999999998
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
.+.
T Consensus 79 ~~~ 81 (90)
T 2dnq_A 79 NKS 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 284
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=7.6e-16 Score=132.31 Aligned_cols=80 Identities=8% Similarity=0.181 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCC--ceecCeee
Q 043470 7 TATTPASLYVGDLHPD-VTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH--TQLHGKML 83 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~-~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~--~~i~g~~i 83 (629)
+..++++|||+|||++ +||++|+++|+.||.|.+|+|.+ ++|||||+|.+.++|++|++.||+ ..|.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4567889999999998 99999999999999999999975 468999999999999999998864 56999999
Q ss_pred eeeccCCCC
Q 043470 84 RISWSCRDP 92 (629)
Q Consensus 84 ~I~~s~~~~ 92 (629)
+|.|+....
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999998654
No 285
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=2.6e-15 Score=126.56 Aligned_cols=77 Identities=23% Similarity=0.369 Sum_probs=71.3
Q ss_pred hhcccceeeeecCCC-CCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 289 LKYKGSNVYVKNIDD-DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 289 ~~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
....+++|||+||++ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344678999999998 99999999999999999999983 7899999999999999999999999999999999
Q ss_pred eccch
Q 043470 368 IAQRK 372 (629)
Q Consensus 368 ~a~~k 372 (629)
+++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99765
No 286
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=9.3e-16 Score=130.66 Aligned_cols=81 Identities=30% Similarity=0.573 Sum_probs=76.4
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
..++|||+|||+++++++|+++|+.||.|.+|+++.+++|.++|||||+|.+.++|.+|++ ++..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4579999999999999999999999999999999999999999999999999999999998 99999999999999987
Q ss_pred hHH
Q 043470 372 KED 374 (629)
Q Consensus 372 k~~ 374 (629)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 654
No 287
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=3.5e-15 Score=125.80 Aligned_cols=77 Identities=23% Similarity=0.499 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 7 TATTPASLYVGDLHP-DVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~-~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
..+++++|||+|||. ++|+++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 566789999999998 99999999999999999999983 589999999999999999999999999999999
Q ss_pred eccCCC
Q 043470 86 SWSCRD 91 (629)
Q Consensus 86 ~~s~~~ 91 (629)
.|+...
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998754
No 288
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=129.54 Aligned_cols=79 Identities=27% Similarity=0.448 Sum_probs=74.1
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
....++|||+|||.++++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 446789999999999999999999999999999999986 789999999999999999999999999999999999
Q ss_pred cchH
Q 043470 370 QRKE 373 (629)
Q Consensus 370 ~~k~ 373 (629)
+.+.
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 289
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=4.5e-15 Score=126.62 Aligned_cols=82 Identities=27% Similarity=0.387 Sum_probs=74.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 4 VPPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 4 ~p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
.+....+.++|||+|||.++|+++|+++|+.||.|.+|++.+ |||||+|.+.++|++|++.||+..|.|+.|
T Consensus 4 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 4 GSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 455666789999999999999999999999999999999975 499999999999999999999999999999
Q ss_pred eeeccCCCCC
Q 043470 84 RISWSCRDPD 93 (629)
Q Consensus 84 ~I~~s~~~~~ 93 (629)
+|.|+.....
T Consensus 76 ~v~~a~~~~~ 85 (103)
T 2dgu_A 76 EIVFAKPPDQ 85 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCcc
Confidence 9999976543
No 290
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.59 E-value=7.8e-16 Score=131.13 Aligned_cols=84 Identities=27% Similarity=0.562 Sum_probs=77.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
|.....+++|||+|||.++|+++|+++|+.||.|.+|++.+|. +++++|||||+|.+.++|++|++ ++..+.|+.|.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 4555667899999999999999999999999999999999998 99999999999999999999998 89999999999
Q ss_pred eeccCCC
Q 043470 85 ISWSCRD 91 (629)
Q Consensus 85 I~~s~~~ 91 (629)
|.|+...
T Consensus 80 v~~a~~~ 86 (102)
T 2xs2_A 80 LGPAIRK 86 (102)
T ss_dssp EEEEEEC
T ss_pred EEECCcC
Confidence 9988754
No 291
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=136.04 Aligned_cols=79 Identities=29% Similarity=0.476 Sum_probs=74.2
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~-~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...++|||+|||.++++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35679999999999999999999999999999999998 47899999999999999999999999999999999999986
No 292
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=122.97 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=70.6
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTF-HGYMLHRKPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~~a 369 (629)
...++|||+|||.++++++|+++|++||.|.+|+++. ++|||||+|.+.++|.+|++.| ++..++|++|+|.|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4568999999999999999999999999999999987 4789999999999999999999 999999999999998
Q ss_pred c
Q 043470 370 Q 370 (629)
Q Consensus 370 ~ 370 (629)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 293
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=9.1e-16 Score=130.46 Aligned_cols=76 Identities=28% Similarity=0.477 Sum_probs=72.4
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccchH
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKE 373 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k~ 373 (629)
++|||+|||+++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|++.|||..++|+.|.|.+++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999987 78999999999999999999999999999999999998664
No 294
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.8e-15 Score=125.62 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
....+++|||+|||.++|+++|+++|+.||.|. ++++.+ +++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445578999999999999999999999999997 677654 578999999999999999999999999999999999
Q ss_pred ccCCC
Q 043470 87 WSCRD 91 (629)
Q Consensus 87 ~s~~~ 91 (629)
|+...
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98754
No 295
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=2.9e-15 Score=140.80 Aligned_cols=84 Identities=29% Similarity=0.393 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...++++|||+|||.++|+++|+++|+.||+|.+|+|++|. +++++|||||.|.+.++|++|++.||+..|.|++|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccCCC
Q 043470 87 WSCRD 91 (629)
Q Consensus 87 ~s~~~ 91 (629)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98754
No 296
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.9e-15 Score=129.11 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=71.4
Q ss_pred ceeeeecC----CCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCC----HHH----HHHHHH--HhCCce
Q 043470 294 SNVYVKNI----DDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSS----PEE----ASKAVN--TFHGYM 358 (629)
Q Consensus 294 ~~l~V~nl----~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~----~~~----A~~A~~--~l~~~~ 358 (629)
++|||+|| ++.+++++|+++|+.||.|.+|+++.|+ +|.++|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999997 78999999999996 433 889988 789999
Q ss_pred eCCeEEEEEeccch
Q 043470 359 LHRKPLYVAIAQRK 372 (629)
Q Consensus 359 ~~g~~l~v~~a~~k 372 (629)
|+|++|+|.+.+.-
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999998643
No 297
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.5e-15 Score=126.50 Aligned_cols=79 Identities=23% Similarity=0.486 Sum_probs=70.7
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 6 PTATTPASLYVGDLHP-DVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~-~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
.+..++++|||+|||. ++|+++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..+.|++|+
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3456788999999998 99999999999999999999984 57999999999999999999999999999999
Q ss_pred eeccCCCC
Q 043470 85 ISWSCRDP 92 (629)
Q Consensus 85 I~~s~~~~ 92 (629)
|.|+....
T Consensus 77 V~~a~~~~ 84 (96)
T 2kvi_A 77 LEVSSSNA 84 (96)
T ss_dssp EEEEECCC
T ss_pred EEEcCcCC
Confidence 99997554
No 298
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=8.4e-16 Score=135.31 Aligned_cols=82 Identities=26% Similarity=0.250 Sum_probs=75.0
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeE--EEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTIT--SAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~--~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
...++|||+|||+++|+++|+++|+.| .|. +|+|+.|++|++||||||+|.+.++|.+|++ +++..|+||.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 356789999999999999999999999 576 9999999999999999999999999999998 578999999999999
Q ss_pred ccchHH
Q 043470 369 AQRKED 374 (629)
Q Consensus 369 a~~k~~ 374 (629)
+.+++.
T Consensus 118 a~~~e~ 123 (126)
T 2hgm_A 118 SSQEEV 123 (126)
T ss_dssp ECHHHH
T ss_pred CCHHHh
Confidence 976654
No 299
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-15 Score=127.38 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=72.4
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 356799999999999999999999999988776 4568899999999999999999999999999999999999997
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
.+.
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 300
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-15 Score=130.51 Aligned_cols=77 Identities=21% Similarity=0.462 Sum_probs=69.9
Q ss_pred hcccceeee--ecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee-----CCe
Q 043470 290 KYKGSNVYV--KNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML-----HRK 362 (629)
Q Consensus 290 ~~~~~~l~V--~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~-----~g~ 362 (629)
..++++||| +||++++|+++|+++|++||.|++|.++. .||||||+|.+.++|.+|++.|||+.+ .|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 345788999 66999999999999999999999998864 378999999999999999999999998 799
Q ss_pred EEEEEeccc
Q 043470 363 PLYVAIAQR 371 (629)
Q Consensus 363 ~l~v~~a~~ 371 (629)
+|+|.|++.
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999999864
No 301
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1e-15 Score=132.49 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
.+..++|||+|||.++|+++|+++|+.||.|.+|++.+ ++|||||+|.+.++|++|++.||+..|.|++|+|.|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999998874 568999999999999999999999999999999999
Q ss_pred cCCC
Q 043470 88 SCRD 91 (629)
Q Consensus 88 s~~~ 91 (629)
+..+
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8754
No 302
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=4e-15 Score=123.05 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
+..++|||+|||+++||++|+++|++| .|.+|++. +++|||||+|.+.++|++|++.||+..+.|++|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 567899999999999999999999999 99999984 58899999999999999999999999999999999999
Q ss_pred CCCC
Q 043470 89 CRDP 92 (629)
Q Consensus 89 ~~~~ 92 (629)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8764
No 303
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.9e-15 Score=127.97 Aligned_cols=77 Identities=29% Similarity=0.441 Sum_probs=72.3
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|||..++|++|.|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 35679999999999999999999999999999999864 7899999999999999999999999999999999997
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
.+
T Consensus 88 ~~ 89 (99)
T 2cpj_A 88 HS 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 304
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=6.9e-15 Score=127.11 Aligned_cols=77 Identities=21% Similarity=0.380 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 8 ATTPASLYVGDLHPD-VTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~-~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...+++|||+|||.+ +|+++|+++|+.||.|.+|++ ++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344589999999999 999999999999999999998 46899999999999999999999999999999999
Q ss_pred ccCCCC
Q 043470 87 WSCRDP 92 (629)
Q Consensus 87 ~s~~~~ 92 (629)
|+....
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997543
No 305
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.2e-15 Score=122.99 Aligned_cols=75 Identities=23% Similarity=0.464 Sum_probs=70.7
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++++++|+++|+.||.|.+|+++++ ||||+|.+.++|.+|++.||+..++|+.|+|.+++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45689999999999999999999999999999999854 99999999999999999999999999999999997
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
.+
T Consensus 81 ~~ 82 (92)
T 2dgt_A 81 SR 82 (92)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 306
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2e-15 Score=130.68 Aligned_cols=76 Identities=24% Similarity=0.302 Sum_probs=71.0
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
..++|||+|||+++++++|+++|+.||.|.+|.++. ++|||||+|.+.++|.+|++.|||..|+|++|+|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 457999999999999999999999999999999874 578999999999999999999999999999999999964
Q ss_pred h
Q 043470 372 K 372 (629)
Q Consensus 372 k 372 (629)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 307
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-15 Score=124.20 Aligned_cols=80 Identities=31% Similarity=0.510 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCC-ceecCeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKS-LASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNH-TQLHGKMLR 84 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~-V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~-~~i~g~~i~ 84 (629)
.....++|||+|||.++||++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||+ ..|.|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4556789999999999999999999999999 6666663 578999999999999999999999 999999999
Q ss_pred eeccCCCCC
Q 043470 85 ISWSCRDPD 93 (629)
Q Consensus 85 I~~s~~~~~ 93 (629)
|.|+.....
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999986543
No 308
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=4.4e-16 Score=139.81 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=76.3
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++|+++|+++|+.|| |.+|+|+.|++|++||||||+|.+.++|.+|+ .+|+..|+|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3567899999999999999999999999 77999999999999999999999999999999 799999999999999998
Q ss_pred chHH
Q 043470 371 RKED 374 (629)
Q Consensus 371 ~k~~ 374 (629)
.++.
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 309
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=127.11 Aligned_cols=79 Identities=23% Similarity=0.383 Sum_probs=72.1
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++++++|+++|+.||.|. ++++.+ .++|||||+|.+.++|.+|++.|||..|+|+.|.|.+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3468999999999999999999999999997 677653 678999999999999999999999999999999999998
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
.+.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 310
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=8e-15 Score=119.49 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=66.9
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 10 TPAS-LYVGDLHPDVTDGE----LFDAFSEFK-SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 10 ~~~s-LyV~nLp~~~te~~----L~~~Fs~~G-~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
++.| |||+|||.++++++ |+++|+.|| +|.+| |+ |+|||.|.+.++|++|++.||+..+.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3445 99999999999988 669999995 99998 33 999999999999999999999999999999
Q ss_pred eeeccCCCCCc
Q 043470 84 RISWSCRDPDA 94 (629)
Q Consensus 84 ~I~~s~~~~~~ 94 (629)
+|.|++.+.+.
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999876543
No 311
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.8e-15 Score=127.33 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=71.3
Q ss_pred hcccceeeeecCCC-CCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDD-DVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
...+++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|||..+.|++|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34678999999998 99999999999999999999984 68999999999999999999999999999999999
Q ss_pred ccchHHH
Q 043470 369 AQRKEDR 375 (629)
Q Consensus 369 a~~k~~~ 375 (629)
+..+...
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9766543
No 312
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=1.3e-15 Score=136.65 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
.....++|||+|||+++||++|+++|+.|| |++|+|++|.. ++++|||||+|.+.++|++|| .+|+..|.|+.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 445678999999999999999999999999 67999999975 999999999999999999999 789999999999999
Q ss_pred ccCCCC
Q 043470 87 WSCRDP 92 (629)
Q Consensus 87 ~s~~~~ 92 (629)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 887654
No 313
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.2e-14 Score=123.99 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=73.4
Q ss_pred hcccceeeeecCCC-----CCCHHHHHHHHhcCCCeEEEEEeeCCC--CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 043470 290 KYKGSNVYVKNIDD-----DVTDEELKAHFSQCGTITSAKVMRDEK--GINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362 (629)
Q Consensus 290 ~~~~~~l~V~nl~~-----~~t~~~l~~~F~~~G~v~~~~v~~~~~--g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~ 362 (629)
...+++|+|+|+.+ +-++++|+++|++||.|.+|+|+.+++ +.++|||||+|.+.++|.+|++.|||+.|+||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45678999999963 236899999999999999999999863 68999999999999999999999999999999
Q ss_pred EEEEEeccc
Q 043470 363 PLYVAIAQR 371 (629)
Q Consensus 363 ~l~v~~a~~ 371 (629)
.|+|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999975
No 314
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.5e-15 Score=131.02 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCe----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSL----ASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V----~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
...++|||+|||+++||++|+++|+.||+| .+|+|++| .+++++|||||+|.+.++|++||+. |+..|.|+.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999975 69999999 5899999999999999999999986 99999999999
Q ss_pred eeccC
Q 043470 85 ISWSC 89 (629)
Q Consensus 85 I~~s~ 89 (629)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 97654
No 315
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=3.1e-15 Score=140.56 Aligned_cols=82 Identities=27% Similarity=0.455 Sum_probs=78.2
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..+++|||+||++++++++|+++|+.||.|++|.|+.+.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 316
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5e-15 Score=126.08 Aligned_cols=82 Identities=29% Similarity=0.487 Sum_probs=73.9
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
....++|||+|||+++++++|+++|+.|+ +|+++.+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34678999999999999999999999874 67777774 789999999999999999999999999999999999999
Q ss_pred ccchHH
Q 043470 369 AQRKED 374 (629)
Q Consensus 369 a~~k~~ 374 (629)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987644
No 317
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=5.9e-15 Score=122.22 Aligned_cols=78 Identities=26% Similarity=0.443 Sum_probs=63.9
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEE
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYM--LHRKPLYVA 367 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~--~~g~~l~v~ 367 (629)
....++|||+|||+++|+++|+++|++||.|.+|+|+.+ +||||||+|.+.++|.+ +++.. +.|+.|.|+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 446789999999999999999999999999999999985 89999999999999983 55655 469999999
Q ss_pred eccchHHH
Q 043470 368 IAQRKEDR 375 (629)
Q Consensus 368 ~a~~k~~~ 375 (629)
++.++..+
T Consensus 80 ~a~~k~~~ 87 (89)
T 3d2w_A 80 NAEPKHNK 87 (89)
T ss_dssp ECC-----
T ss_pred EcCCCCcC
Confidence 99877553
No 318
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.57 E-value=3.7e-15 Score=131.17 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCee--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLA--SVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~--si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
.+...++|||+|||+++||++|+++|+.| .|+ +|+|++|.. ++++|||||+|.+.++|++||+. ++..|.|+.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 45567899999999999999999999999 577 999999977 99999999999999999999985 77999999999
Q ss_pred eeccCC
Q 043470 85 ISWSCR 90 (629)
Q Consensus 85 I~~s~~ 90 (629)
|.++.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987753
No 319
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.6e-15 Score=122.28 Aligned_cols=75 Identities=21% Similarity=0.443 Sum_probs=70.6
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++|+++|+++|+.||.|.+|+++++ ||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 45689999999999999999999999999999999854 99999999999999999999999999999999997
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
.+
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 320
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=2.2e-16 Score=138.01 Aligned_cols=84 Identities=29% Similarity=0.488 Sum_probs=77.9
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEE--------EEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITS--------AKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRK 362 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~ 362 (629)
..++|||+|||+++++++|+++|+.||.|.+ |+++.++ +|.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4578999999999999999999999999999 8999884 689999999999999999999999999999999
Q ss_pred EEEEEeccchHHH
Q 043470 363 PLYVAIAQRKEDR 375 (629)
Q Consensus 363 ~l~v~~a~~k~~~ 375 (629)
+|+|.+++.+..+
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999876543
No 321
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=3.9e-15 Score=125.25 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...+.++|||+|||.++|+++|+++|+.||.|..| ..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34557899999999999999999999999987665 3577899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 043470 87 WSCRDP 92 (629)
Q Consensus 87 ~s~~~~ 92 (629)
|+....
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 987553
No 322
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.5e-14 Score=120.53 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
...+.++|||+|| ++|+++|+++|+.||.|.+|+|. +++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4456789999996 99999999999999999999984 467899999999999999999999999999999999
Q ss_pred ccCCCCC
Q 043470 87 WSCRDPD 93 (629)
Q Consensus 87 ~s~~~~~ 93 (629)
|+...+.
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9987654
No 323
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=7.8e-15 Score=133.95 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC--eeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG--KMLR 84 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g--~~i~ 84 (629)
++....+|||+||++++||++|+++|++||.|.+|+|..+ +++|||||+|.+.++|++|++.||+..|.| +.|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 4444568999999999999999999999999999999754 257899999999999999999999999976 9999
Q ss_pred eeccCCC
Q 043470 85 ISWSCRD 91 (629)
Q Consensus 85 I~~s~~~ 91 (629)
|.|+...
T Consensus 118 V~~Ak~~ 124 (164)
T 1sjr_A 118 IDFSKLT 124 (164)
T ss_dssp EEECSSS
T ss_pred EEEecCC
Confidence 9999855
No 324
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-15 Score=130.63 Aligned_cols=81 Identities=26% Similarity=0.424 Sum_probs=73.2
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCe----EEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTI----TSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v----~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 366 (629)
..+++|||+|||+++|+++|+++|+.||.| ..+++. +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 356899999999999999999999999998 455554 6889999999999999999999999999999999999
Q ss_pred EeccchHH
Q 043470 367 AIAQRKED 374 (629)
Q Consensus 367 ~~a~~k~~ 374 (629)
.|+..+..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99987643
No 325
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=2.5e-15 Score=136.38 Aligned_cols=86 Identities=27% Similarity=0.452 Sum_probs=74.2
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEE------EEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSA------KVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP 363 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~------~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~ 363 (629)
...+++|||+|||+++|+++|+++|+.||.|.+| .+....+|.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3467899999999999999999999999998874 1222246899999999999999999999999999999999
Q ss_pred EEEEeccchHHH
Q 043470 364 LYVAIAQRKEDR 375 (629)
Q Consensus 364 l~v~~a~~k~~~ 375 (629)
|.|.+++....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999765443
No 326
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=1.2e-15 Score=122.15 Aligned_cols=74 Identities=19% Similarity=0.358 Sum_probs=69.6
Q ss_pred eeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE-KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~-~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
+|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++ +++..++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999885 58899999999999999999998 4899999999999875
No 327
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.7e-14 Score=120.82 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEF--KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~--G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
...+.++|||+|||.++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 45667899999999999999999999999 899999875 46999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 043470 85 ISWSCRDPD 93 (629)
Q Consensus 85 I~~s~~~~~ 93 (629)
|.|+.....
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999986543
No 328
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.2e-15 Score=125.98 Aligned_cols=77 Identities=23% Similarity=0.412 Sum_probs=69.8
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCC-eEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEEe
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGT-ITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHG-YMLHRKPLYVAI 368 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~-~~~~g~~l~v~~ 368 (629)
...++|||+|||+++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 35679999999999999999999999999 6766663 578999999999999999999999 999999999999
Q ss_pred ccchH
Q 043470 369 AQRKE 373 (629)
Q Consensus 369 a~~k~ 373 (629)
++.+.
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98653
No 329
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=5.6e-15 Score=122.15 Aligned_cols=75 Identities=27% Similarity=0.375 Sum_probs=70.1
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
..++|||+|||+++++++|+++|++| .|.+|++. +++|||||+|.+.++|.+|++.|||..++|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 35789999999999999999999999 99999984 5899999999999999999999999999999999999865
Q ss_pred h
Q 043470 372 K 372 (629)
Q Consensus 372 k 372 (629)
+
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 330
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=3e-16 Score=133.47 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=73.2
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~-~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..++|||+|||+++|+++|+++|+.||.|.+ .++.+ .+|.++|||||+|.+.++|.+|++ |||..|+|+.|.|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5679999999999999999999999999988 44444 468899999999999999999998 99999999999999998
Q ss_pred chHH
Q 043470 371 RKED 374 (629)
Q Consensus 371 ~k~~ 374 (629)
.+..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 331
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=122.90 Aligned_cols=76 Identities=25% Similarity=0.491 Sum_probs=70.5
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcC--CCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQC--GTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
...++|||+|||+++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 356899999999999999999999999 999999875 56999999999999999999999999999999999
Q ss_pred ccchH
Q 043470 369 AQRKE 373 (629)
Q Consensus 369 a~~k~ 373 (629)
++.+.
T Consensus 86 a~~~~ 90 (99)
T 2cpd_A 86 AKPVD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98653
No 332
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.2e-14 Score=120.08 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeec
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISW 87 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~ 87 (629)
....++|||+|||.++|+++|+++|+.||.|.+| +.|..+++ ||||+|.+.++|++|++ ||+..|.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 4456899999999999999999999999999987 56666665 99999999999999999 999999999999998
Q ss_pred cCCCC
Q 043470 88 SCRDP 92 (629)
Q Consensus 88 s~~~~ 92 (629)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 87543
No 333
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=7e-15 Score=134.25 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=70.8
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEecc
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR--KPLYVAIAQ 370 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~ 370 (629)
..+|||+||++.+|+++|+++|++||.|++|+++.+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 356899999999999999999999999999999765 268999999999999999999999999955 999999998
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
.+
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 66
No 334
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.55 E-value=7.3e-15 Score=126.61 Aligned_cols=78 Identities=12% Similarity=0.178 Sum_probs=71.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--hcCCce
Q 043470 12 ASLYVGDL----HPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS----PHD----AIRAIE--VKNHTQ 77 (629)
Q Consensus 12 ~sLyV~nL----p~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~----~~~----A~~Al~--~ln~~~ 77 (629)
..|||+|| |+.++|++|+++|+.||+|.+++++.|+.|++|+|||||.|.+ +++ |.+|++ .||+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 899988 789999
Q ss_pred ecCeeeeeeccC
Q 043470 78 LHGKMLRISWSC 89 (629)
Q Consensus 78 i~g~~i~I~~s~ 89 (629)
|.|++|+|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998543
No 335
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=1.1e-14 Score=124.25 Aligned_cols=77 Identities=26% Similarity=0.472 Sum_probs=71.3
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
...++|||+|||+++|+++|+++|+.||.|.+|++++ |||||+|.+.++|.+|++.||+..|+|+.|.|.|+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 3567899999999999999999999999999999974 499999999999999999999999999999999998
Q ss_pred chHH
Q 043470 371 RKED 374 (629)
Q Consensus 371 ~k~~ 374 (629)
.+..
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 6644
No 336
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=1.5e-14 Score=127.25 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=69.9
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEecc
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF-GFVCFSSPEEASKAVNTFHGYMLHR--KPLYVAIAQ 370 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~-~fV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~ 370 (629)
..|||+||++.+|+++|+++|++||.|.+|+++.+ ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 45889999999999999999999999999999875 3678 9999999999999999999999988 999999998
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
.++
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 653
No 337
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.55 E-value=1.5e-15 Score=162.92 Aligned_cols=152 Identities=18% Similarity=0.325 Sum_probs=113.9
Q ss_pred HHHHHhcCCCeeEEEEee----cC-CCCCcceEE--EEEeCCHHHHHHHHHhcCCceecCe---------------eeee
Q 043470 28 LFDAFSEFKSLASVRVCK----DS-TTGRSTCYG--YVNFLSPHDAIRAIEVKNHTQLHGK---------------MLRI 85 (629)
Q Consensus 28 L~~~Fs~~G~V~si~v~r----d~-~t~~s~G~A--fV~F~~~~~A~~Al~~ln~~~i~g~---------------~i~I 85 (629)
|.++|..+++|..|..+. +. .+....|++ |+.|.+..++..++..++......+ .+.+
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 789999999999884443 22 222233444 7888887666555544333222211 1222
Q ss_pred eccCCCCCcccCCcccccccccchhhhhHHHHHHHccCCCeeEeEEeeCC-CCCccceEEEEEcCHHHHHHHHHHhCCCc
Q 043470 86 SWSCRDPDARKSGVANLFVKNLIESIDNVRLQEMFQNFGNIISCKVATSE-DGKSKGHGFVQFETEESANAAIENLNGTT 164 (629)
Q Consensus 86 ~~s~~~~~~~~s~~~~v~V~nLp~~it~~~L~~~fs~fG~I~s~kv~~d~-~g~skg~afV~f~~~e~A~~Ai~~lng~~ 164 (629)
.....++........+|||+||+..+|+++|.++|+.||.|..|+|+.+. +|.++|||||+|.+.++|..||+.|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 22233344444556899999999999999999999999999999999986 89999999999999999999999999999
Q ss_pred ccCceeeeecccccC
Q 043470 165 VGDKRIYVGRFIKKS 179 (629)
Q Consensus 165 l~g~~l~v~~~~~~~ 179 (629)
|.|+.|.|.+.....
T Consensus 169 i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 169 IDGRRVLVDVERGRT 183 (437)
T ss_pred ECCEEEEEEEeCCCC
Confidence 999999998876543
No 338
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=1.6e-14 Score=127.02 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHhcCCceecC--eeeeee
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCY-GYVNFLSPHDAIRAIEVKNHTQLHG--KMLRIS 86 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~-AfV~F~~~~~A~~Al~~ln~~~i~g--~~i~I~ 86 (629)
.--.|||+||++++||++|+++|++||.|.+|++.++ ++|+ |||+|.+.++|++|++.||+..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3347889999999999999999999999999999874 3577 9999999999999999999999998 899999
Q ss_pred ccCCC
Q 043470 87 WSCRD 91 (629)
Q Consensus 87 ~s~~~ 91 (629)
|++.+
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 99855
No 339
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=122.13 Aligned_cols=76 Identities=29% Similarity=0.421 Sum_probs=70.0
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
..+++|||+|+ ++|+++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|++.|||..|+|++|+|.|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 35689999996 89999999999999999999994 478999999999999999999999999999999999997
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
.+.
T Consensus 86 ~~~ 88 (97)
T 1x5p_A 86 KQP 88 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 340
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.54 E-value=8.1e-15 Score=126.66 Aligned_cols=74 Identities=27% Similarity=0.472 Sum_probs=69.9
Q ss_pred ccceeeeecCCCC-CCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 292 KGSNVYVKNIDDD-VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 292 ~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
.+++|||+||+++ +++++|+++|+.||.|.+|++ ++|||||+|.+.++|.+|++.||+..|+|+.|.|.+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4579999999999 999999999999999999999 57899999999999999999999999999999999997
Q ss_pred ch
Q 043470 371 RK 372 (629)
Q Consensus 371 ~k 372 (629)
.+
T Consensus 99 ~~ 100 (110)
T 1wf1_A 99 EP 100 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 341
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=121.47 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEE-EeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVR-VCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~-v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
....+++|||+|||+++|+++|+++|+.||.|.+|+ |.+|..++ .|||+|.+.++|++|++.||+..|.|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 344578999999999999999999999999999995 88876654 4999999999999999999999999999999
Q ss_pred eccCCC
Q 043470 86 SWSCRD 91 (629)
Q Consensus 86 ~~s~~~ 91 (629)
.|+...
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 998765
No 342
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=3.5e-15 Score=135.43 Aligned_cols=85 Identities=18% Similarity=0.306 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCe
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVR--V---CKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGK 81 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~--v---~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~ 81 (629)
...++++|||+|||+++|+++|+++|+.||.|.++. + ++...+++++|||||.|.+.++|++|++.||+..|.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 456778999999999999999999999999988741 1 12234788999999999999999999999999999999
Q ss_pred eeeeeccCCC
Q 043470 82 MLRISWSCRD 91 (629)
Q Consensus 82 ~i~I~~s~~~ 91 (629)
+|+|.|+...
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999754
No 343
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=124.46 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=71.9
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee-----c
Q 043470 7 TATTPASLYV--GDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQL-----H 79 (629)
Q Consensus 7 ~~~~~~sLyV--~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i-----~ 79 (629)
...++++||| |||+.++||++|+++|++||.|.+|.|.. ++|||||+|.+.++|++|++.||+..| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4456789999 77999999999999999999999998864 368999999999999999999999988 6
Q ss_pred CeeeeeeccCCCCC
Q 043470 80 GKMLRISWSCRDPD 93 (629)
Q Consensus 80 g~~i~I~~s~~~~~ 93 (629)
|+++.|.|+...+.
T Consensus 95 g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 95 KITLYLNFVEKVQW 108 (114)
T ss_dssp EEECEEEEESCCCC
T ss_pred CcEEEEEecccCcc
Confidence 89999998876543
No 344
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=1.1e-14 Score=126.90 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=65.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCee--
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKM-- 82 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~-- 82 (629)
|+..+..++|||+|||.++|+++|+++|+.||.|.+|+|++| |||||+|.+.++|++||+.||+..|.|+.
T Consensus 10 pp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 10 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp -------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 344467789999999999999999999999999999999876 89999999999999999999999999998
Q ss_pred ---eeeeccC
Q 043470 83 ---LRISWSC 89 (629)
Q Consensus 83 ---i~I~~s~ 89 (629)
|+|..+.
T Consensus 83 ~~~i~v~~~~ 92 (115)
T 3beg_B 83 TAYIRVKVDG 92 (115)
T ss_dssp CCBCEEEECC
T ss_pred eEEEEeccCC
Confidence 5555444
No 345
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=2e-14 Score=119.00 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=63.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 5 PPTATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
.....+..+|||+|||+++||++|+++|++||.|.+|+|.+| ++|||||+|.+.++|+++.. ....+.|+.|+
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~ 77 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG--EDLIIKGISVH 77 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT--CEEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC--CCcccCCEEEE
Confidence 345667889999999999999999999999999999999875 78999999999999994322 13345699999
Q ss_pred eeccCCC
Q 043470 85 ISWSCRD 91 (629)
Q Consensus 85 I~~s~~~ 91 (629)
|.|+...
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9988744
No 346
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=120.93 Aligned_cols=79 Identities=24% Similarity=0.332 Sum_probs=71.7
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEE-EeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAK-VMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~-v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
.+++|||+|||+++++++|+++|+.||.|.+|+ ++.++. .|.|||+|.+.++|.+|++.|||..++|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 467899999999999999999999999999995 777643 3449999999999999999999999999999999998
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
.++
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 347
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=118.19 Aligned_cols=71 Identities=17% Similarity=0.324 Sum_probs=64.2
Q ss_pred ceeeeecCCCCCCHHH----HHHHHhcC-CCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 043470 294 SNVYVKNIDDDVTDEE----LKAHFSQC-GTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAI 368 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~----l~~~F~~~-G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 368 (629)
+.|||+|||+++++++ |+++|++| |.|.+| +| |||||+|.+.++|++|++.|+|..+.||+|+|.|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 4499999999999988 55899999 599998 23 8999999999999999999999999999999999
Q ss_pred ccchH
Q 043470 369 AQRKE 373 (629)
Q Consensus 369 a~~k~ 373 (629)
|+.+.
T Consensus 81 A~~~s 85 (96)
T 2diu_A 81 TPKNR 85 (96)
T ss_dssp SCCSC
T ss_pred cCCCc
Confidence 98654
No 348
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=119.72 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=67.2
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
..++|||+|||+++|+++|+++|+.||.|.+| +....+|. ||||+|.+.++|.+|++ |||..|+|+.|.|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 34689999999999999999999999999998 33333444 99999999999999999 999999999999998865
Q ss_pred h
Q 043470 372 K 372 (629)
Q Consensus 372 k 372 (629)
+
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 4
No 349
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3e-14 Score=123.88 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=68.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTT---GRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t---~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
....+++|||+|||+++||++|+++|++||+|. ++++.+..+ ++++|||||+|.+.++|++||+.|+ .+.|+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 456789999999999999999999999999999 888888877 6999999999999999999999883 3566666
Q ss_pred eeecc
Q 043470 84 RISWS 88 (629)
Q Consensus 84 ~I~~s 88 (629)
.+..+
T Consensus 81 ~~~~~ 85 (114)
T 2dnl_A 81 LCVSS 85 (114)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 55543
No 350
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=4.4e-14 Score=123.73 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=68.0
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEecc
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGF-GFVCFSSPEEASKAVNTFHGYMLHR--KPLYVAIAQ 370 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~-~fV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~ 370 (629)
..|||+||++.+|+++|+++|++||.|.+|+|+.. +|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 34789999999999999999999999999999763 276 9999999999999999999999987 699999998
Q ss_pred chH
Q 043470 371 RKE 373 (629)
Q Consensus 371 ~k~ 373 (629)
.+.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 664
No 351
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=6.2e-14 Score=119.60 Aligned_cols=82 Identities=9% Similarity=0.144 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHhcCCceecCe
Q 043470 8 ATTPASLYVGDLHP-----DVTDGELFDAFSEFKSLASVRVCKDSTT-GRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGK 81 (629)
Q Consensus 8 ~~~~~sLyV~nLp~-----~~te~~L~~~Fs~~G~V~si~v~rd~~t-~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~ 81 (629)
+.++++|+|.||-. +.++++|++.|++||.|.+|+|++|..+ ++++|||||.|.+.++|++|++.||+..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46789999999963 3478999999999999999999998654 68999999999999999999999999999999
Q ss_pred eeeeeccC
Q 043470 82 MLRISWSC 89 (629)
Q Consensus 82 ~i~I~~s~ 89 (629)
.|+|.|+.
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999876
No 352
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=1.9e-14 Score=125.40 Aligned_cols=74 Identities=24% Similarity=0.362 Sum_probs=66.4
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeE-----EEE
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKP-----LYV 366 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~-----l~v 366 (629)
..++|||+|||+++++++|+++|+.||.|.+|+|+.+ |||||+|.+.++|.+|++.|||..|+|+. +.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3578999999999999999999999999999999876 79999999999999999999999999998 666
Q ss_pred Eeccc
Q 043470 367 AIAQR 371 (629)
Q Consensus 367 ~~a~~ 371 (629)
..+..
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 66554
No 353
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=7.7e-14 Score=122.20 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=66.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHhcCCceecC--eeeeeecc
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCY-GYVNFLSPHDAIRAIEVKNHTQLHG--KMLRISWS 88 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~-AfV~F~~~~~A~~Al~~ln~~~i~g--~~i~I~~s 88 (629)
..|||+||++++|+++|+++|++||.|.+|+|.+. + |+ |||+|.+.++|++|++.||+..|.| ++|+|.|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----N-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----S-SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----C-CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 35789999999999999999999999999999752 2 75 9999999999999999999999988 58999998
Q ss_pred CCC
Q 043470 89 CRD 91 (629)
Q Consensus 89 ~~~ 91 (629)
...
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 354
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=3.3e-14 Score=117.12 Aligned_cols=73 Identities=21% Similarity=0.430 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Q 043470 8 ATTPASLYVGDLHPDVTDGELFDAFSEF----K-------SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT 76 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~~te~~L~~~Fs~~----G-------~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~ 76 (629)
.++.++|||+|||.++|+++|+++|+.| | .|.+|++.++ +|||||+|.+.++|++|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4567899999999999999999999999 8 8999999865 689999999999999999 99999
Q ss_pred eecCeeeeeec
Q 043470 77 QLHGKMLRISW 87 (629)
Q Consensus 77 ~i~g~~i~I~~ 87 (629)
.|.|+.|+|..
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999964
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=117.99 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
..+++|||+|||.++||++|+++|+.||+|.+|+|.++ ++|||||+|.+.++|++|+.. ...+.|+.|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 46799999999999999999999999999999999875 779999999999999876542 45668999999998
Q ss_pred CCCCC
Q 043470 89 CRDPD 93 (629)
Q Consensus 89 ~~~~~ 93 (629)
.....
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=8.6e-14 Score=132.69 Aligned_cols=80 Identities=26% Similarity=0.315 Sum_probs=74.0
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
..++|||+|||+++|+++|+++|+.||.|.+|++.++.+|.++|||||+|.+.++|.+|+..++ ..++|++|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 3468999999999999999999999999999999999999999999999999999999997665 589999999999865
Q ss_pred h
Q 043470 372 K 372 (629)
Q Consensus 372 k 372 (629)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 357
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=9.3e-14 Score=121.97 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRIS 86 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~ 86 (629)
.+.++++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4556789999996 79999999999999999999996 477899999999999999999999999999999999
Q ss_pred ccCCCCC
Q 043470 87 WSCRDPD 93 (629)
Q Consensus 87 ~s~~~~~ 93 (629)
|+...+.
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9986643
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.48 E-value=1.2e-13 Score=131.61 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=72.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeeccCC
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWSCR 90 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s~~ 90 (629)
.++|||+|||.++|+++|.++|+.||.|.+|+++++. +++++|||||+|.+.++|++|++.++ ..|.|++|+|.|...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4899999999999999999999999999999999985 58899999999999999999998765 489999999998764
Q ss_pred C
Q 043470 91 D 91 (629)
Q Consensus 91 ~ 91 (629)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=3.9e-14 Score=124.39 Aligned_cols=79 Identities=28% Similarity=0.381 Sum_probs=71.4
Q ss_pred hcccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 043470 290 KYKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIA 369 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 369 (629)
...+++|||+|+ ++|+++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 346789999996 69999999999999999999996 47899999999999999999999999999999999999
Q ss_pred cchHHH
Q 043470 370 QRKEDR 375 (629)
Q Consensus 370 ~~k~~~ 375 (629)
+.+...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 876543
No 360
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.47 E-value=8.7e-14 Score=114.55 Aligned_cols=71 Identities=27% Similarity=0.528 Sum_probs=66.4
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcC----C-------CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQC----G-------TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G-------~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~ 360 (629)
..++|||+|||+++++++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 45789999999999999999999999 8 9999999864 789999999999999999 99999999
Q ss_pred CeEEEEEe
Q 043470 361 RKPLYVAI 368 (629)
Q Consensus 361 g~~l~v~~ 368 (629)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999873
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=7e-14 Score=136.36 Aligned_cols=82 Identities=26% Similarity=0.436 Sum_probs=72.0
Q ss_pred CCCCCCCeEEEcCCCCCC---------CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Q 043470 6 PTATTPASLYVGDLHPDV---------TDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT 76 (629)
Q Consensus 6 ~~~~~~~sLyV~nLp~~~---------te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~ 76 (629)
+.....++||||||+.++ +|++|+++|+.||+|.+|+|++ ++|||||.|.+.++|+.|++.|++.
T Consensus 129 s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 129 SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp --CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 345678999999999998 7999999999999999999985 5789999999999999999999999
Q ss_pred ee------------cCeeeeeeccCCCCC
Q 043470 77 QL------------HGKMLRISWSCRDPD 93 (629)
Q Consensus 77 ~i------------~g~~i~I~~s~~~~~ 93 (629)
.| .|+.|+|.|+..++.
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 99 899999999997754
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=3.8e-14 Score=120.84 Aligned_cols=72 Identities=21% Similarity=0.367 Sum_probs=62.9
Q ss_pred eecCCCCCCHHHHHHHH------------hcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 043470 298 VKNIDDDVTDEELKAHF------------SQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLY 365 (629)
Q Consensus 298 V~nl~~~~t~~~l~~~F------------~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~ 365 (629)
+.||++.+++++|+++| ++||.|.+|+|+++.+|+++|||||+|.+.++|.+|++.|||+.++||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566666666555555 999999999999998899999999999999999999999999999999999
Q ss_pred EEec
Q 043470 366 VAIA 369 (629)
Q Consensus 366 v~~a 369 (629)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 363
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.6e-14 Score=118.14 Aligned_cols=77 Identities=23% Similarity=0.418 Sum_probs=66.5
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 371 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 371 (629)
.+++|||+|||+++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|... ...++|+.|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 4689999999999999999999999999999999875 789999999999999764321 3456899999999986
Q ss_pred hHH
Q 043470 372 KED 374 (629)
Q Consensus 372 k~~ 374 (629)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 364
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.3e-14 Score=122.33 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=67.7
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC----CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK----GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~----g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
..++|||+|||+++|+++|+++|++||.|. +.++.+.. |+++|||||+|.+.++|.+|++.|+ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 467899999999999999999999999999 88877653 7899999999999999999999985 4788888887
Q ss_pred eccc
Q 043470 368 IAQR 371 (629)
Q Consensus 368 ~a~~ 371 (629)
.+..
T Consensus 84 ~~~~ 87 (114)
T 2dnl_A 84 SSPT 87 (114)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 6543
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=1.2e-13 Score=117.79 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=71.4
Q ss_pred cccceeeeecCC--CCCC--------HHHHHHHHhcCCCeEEEEEeeCCCC---CeeeEEEEEeCCHHHHHHHHHHhCCc
Q 043470 291 YKGSNVYVKNID--DDVT--------DEELKAHFSQCGTITSAKVMRDEKG---INKGFGFVCFSSPEEASKAVNTFHGY 357 (629)
Q Consensus 291 ~~~~~l~V~nl~--~~~t--------~~~l~~~F~~~G~v~~~~v~~~~~g---~~kg~~fV~f~~~~~A~~A~~~l~~~ 357 (629)
.++++|.+.|+- .++. +++|++.|++||.|++|+|+++..+ .++|||||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 356789999983 3333 3799999999999999999998754 68999999999999999999999999
Q ss_pred eeCCeEEEEEeccch
Q 043470 358 MLHRKPLYVAIAQRK 372 (629)
Q Consensus 358 ~~~g~~l~v~~a~~k 372 (629)
.|+||.|.|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998654
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=3.8e-13 Score=117.00 Aligned_cols=82 Identities=17% Similarity=0.298 Sum_probs=72.1
Q ss_pred hcccceeeeecCCC--CC---CHHHHHHHHhcCCCeEEEEEeeCCC-----CCeeeEEEEEeCCHHHHHHHHHHhCCcee
Q 043470 290 KYKGSNVYVKNIDD--DV---TDEELKAHFSQCGTITSAKVMRDEK-----GINKGFGFVCFSSPEEASKAVNTFHGYML 359 (629)
Q Consensus 290 ~~~~~~l~V~nl~~--~~---t~~~l~~~F~~~G~v~~~~v~~~~~-----g~~kg~~fV~f~~~~~A~~A~~~l~~~~~ 359 (629)
..++++|+|+|+-. ++ .++||++.|++||.|.+|+|+.+.. ++++||+||+|.+.++|.+|++.|||+.|
T Consensus 17 ~~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 17 KQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HHSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 34678999999843 22 3689999999999999999999853 56899999999999999999999999999
Q ss_pred CCeEEEEEeccc
Q 043470 360 HRKPLYVAIAQR 371 (629)
Q Consensus 360 ~g~~l~v~~a~~ 371 (629)
+||.|+|.|+..
T Consensus 97 ~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 AGRKVVAEVYDQ 108 (118)
T ss_dssp TTEECEEEEECH
T ss_pred CCcEEEEEEcCh
Confidence 999999999864
No 367
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.42 E-value=1.5e-13 Score=134.11 Aligned_cols=78 Identities=27% Similarity=0.399 Sum_probs=70.3
Q ss_pred ccceeeeecCCCCC---------CHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee---
Q 043470 292 KGSNVYVKNIDDDV---------TDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML--- 359 (629)
Q Consensus 292 ~~~~l~V~nl~~~~---------t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~--- 359 (629)
..++|||+||+..+ ++++|+++|++||.|++|+|+. +||||||+|.+.++|..|++.|+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 56799999999998 7999999999999999999986 589999999999999999999999999
Q ss_pred ---------CCeEEEEEeccchHH
Q 043470 360 ---------HRKPLYVAIAQRKED 374 (629)
Q Consensus 360 ---------~g~~l~v~~a~~k~~ 374 (629)
+|+.|.|.||..+..
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccCCCCEEEEEEccCCCC
Confidence 899999999986544
No 368
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=7.1e-13 Score=114.73 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=69.4
Q ss_pred cccceeeeecCCCCCC-----------HHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee
Q 043470 291 YKGSNVYVKNIDDDVT-----------DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYML 359 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t-----------~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~ 359 (629)
..+++|+|+||.+..+ +++|+++|++||.|.+|.| .+. .++|||||+|.+.++|.+|++.|||..|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4578899999954432 5899999999999999966 543 3899999999999999999999999999
Q ss_pred CCeEEEEEeccchH
Q 043470 360 HRKPLYVAIAQRKE 373 (629)
Q Consensus 360 ~g~~l~v~~a~~k~ 373 (629)
+|++|.|.++..+.
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999997653
No 369
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.1e-12 Score=110.65 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=72.6
Q ss_pred CCCCCCCCeEEEcCCCCCCC-----------HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 043470 5 PPTATTPASLYVGDLHPDVT-----------DGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVK 73 (629)
Q Consensus 5 p~~~~~~~sLyV~nLp~~~t-----------e~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~l 73 (629)
...+.++++|+|.||-...+ +++|+++|++||.|.+|.| .|. .++|||||.|.+.++|++|++.|
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 34667889999999944332 6899999999999999966 453 37899999999999999999999
Q ss_pred CCceecCeeeeeeccCCCCC
Q 043470 74 NHTQLHGKMLRISWSCRDPD 93 (629)
Q Consensus 74 n~~~i~g~~i~I~~s~~~~~ 93 (629)
|+..|.|++|+|.|+.....
T Consensus 85 ng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TTCEETTEECEEEECCSCCC
T ss_pred CCCEECCcEEEEEEeCCCCC
Confidence 99999999999999876543
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=1.8e-12 Score=110.52 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=71.6
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhcCCCeeEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHhcCCc
Q 043470 9 TTPASLYVGDL--HPDVT--------DGELFDAFSEFKSLASVRVCKDSTT--GRSTCYGYVNFLSPHDAIRAIEVKNHT 76 (629)
Q Consensus 9 ~~~~sLyV~nL--p~~~t--------e~~L~~~Fs~~G~V~si~v~rd~~t--~~s~G~AfV~F~~~~~A~~Al~~ln~~ 76 (629)
.+++.|.|.|+ +.++. +++|++.|++||.|.+|+|+++..+ ++++|+|||.|.+.++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46889999998 33443 3789999999999999999998755 468999999999999999999999999
Q ss_pred eecCeeeeeeccC
Q 043470 77 QLHGKMLRISWSC 89 (629)
Q Consensus 77 ~i~g~~i~I~~s~ 89 (629)
.+.||.|++.|..
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999865
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.33 E-value=5.1e-13 Score=113.77 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=63.4
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 16 VGDLHPDVTDGELFDAF------------SEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 16 V~nLp~~~te~~L~~~F------------s~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
+.+|+.++++++|.+.| ++||.|.+|+|+++.. ++++|||||.|.+.++|++|++.||+..+.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667777776666 9999999999999864 7899999999999999999999999999999999
Q ss_pred eeecc
Q 043470 84 RISWS 88 (629)
Q Consensus 84 ~I~~s 88 (629)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=3.7e-12 Score=110.71 Aligned_cols=81 Identities=14% Similarity=0.215 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCC--C---CCHHHHHHHHhcCCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHhcCCceec
Q 043470 9 TTPASLYVGDLHP--D---VTDGELFDAFSEFKSLASVRVCKDST----TGRSTCYGYVNFLSPHDAIRAIEVKNHTQLH 79 (629)
Q Consensus 9 ~~~~sLyV~nLp~--~---~te~~L~~~Fs~~G~V~si~v~rd~~----t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~ 79 (629)
+++++|+|.|+-. + -.+++|++.|++||.|.+|+|++|.. +++++|++||.|.+.++|.+|++.||+..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3689999999942 2 24689999999999999999999865 4678999999999999999999999999999
Q ss_pred CeeeeeeccC
Q 043470 80 GKMLRISWSC 89 (629)
Q Consensus 80 g~~i~I~~s~ 89 (629)
||.|++.|..
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999865
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2e-11 Score=102.71 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCC-------CCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC
Q 043470 8 ATTPASLYVGDLH-------PDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG 80 (629)
Q Consensus 8 ~~~~~sLyV~nLp-------~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g 80 (629)
....++|.|.-.. .++||++|+++|++||.|.+|+|++ +++|||||+|.+.++|++|++.+++ +.|
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g 79 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVD 79 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCC
Confidence 3345678787665 4689999999999999999999983 5889999999999999999997544 679
Q ss_pred eeeeeeccCCCCCc
Q 043470 81 KMLRISWSCRDPDA 94 (629)
Q Consensus 81 ~~i~I~~s~~~~~~ 94 (629)
++|+|.|+...+..
T Consensus 80 ~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 80 NPLKISWLEGQPQD 93 (100)
T ss_dssp SBCEEECSSCCCCC
T ss_pred CeEEEEEccCCCCC
Confidence 99999999866543
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.28 E-value=9.7e-12 Score=107.33 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=67.7
Q ss_pred ccceeeeecCCCCCC----------HHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 043470 292 KGSNVYVKNIDDDVT----------DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t----------~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g 361 (629)
.+++|.++|+=..-. ++||++.|++||.|++|.|.++. ++||+||+|.+.++|.+|++.|||+.|+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 467888998843221 36899999999999999997753 58999999999999999999999999999
Q ss_pred eEEEEEeccchH
Q 043470 362 KPLYVAIAQRKE 373 (629)
Q Consensus 362 ~~l~v~~a~~k~ 373 (629)
|.|+|.|+....
T Consensus 83 R~i~v~~~~~~~ 94 (114)
T 3s6e_A 83 KMITAAYVPLPT 94 (114)
T ss_dssp EECEEEEECHHH
T ss_pred EEEEEEEEcHHH
Confidence 999999997543
No 375
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.24 E-value=8.9e-12 Score=128.05 Aligned_cols=76 Identities=22% Similarity=0.459 Sum_probs=66.5
Q ss_pred hcccceeeeec--CCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC---Ce--
Q 043470 290 KYKGSNVYVKN--IDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH---RK-- 362 (629)
Q Consensus 290 ~~~~~~l~V~n--l~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~---g~-- 362 (629)
..++.+|||+| |++.+|+++|+++|++||.|++|.+.. +||||||+|.+.++|.+|++.|||+.+- |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 34678999999 578999999999999999999987753 5799999999999999999999999872 34
Q ss_pred EEEEEecc
Q 043470 363 PLYVAIAQ 370 (629)
Q Consensus 363 ~l~v~~a~ 370 (629)
.|+|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 78999884
No 376
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=104.03 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 303 DDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 303 ~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|.+|++.+++ +.|++|.|.|++.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 468999999999999999999998 46899999999999999999997554 67999999999755
No 377
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.18 E-value=3.5e-11 Score=123.62 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=66.3
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceec---Ce
Q 043470 7 TATTPASLYVGD--LHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLH---GK 81 (629)
Q Consensus 7 ~~~~~~sLyV~n--Lp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~---g~ 81 (629)
+..++++|||+| |+.++||++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.||+..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 467788999999 578999999999999999999988753 4689999999999999999999999773 44
Q ss_pred --eeeeeccC
Q 043470 82 --MLRISWSC 89 (629)
Q Consensus 82 --~i~I~~s~ 89 (629)
++++.|..
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 56776654
No 378
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.16 E-value=9.9e-11 Score=100.96 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=67.8
Q ss_pred CCCCCCeEEEcCCCCCCC----------HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Q 043470 7 TATTPASLYVGDLHPDVT----------DGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT 76 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~t----------e~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~ 76 (629)
++.+++.|.|.|+=..-. +++|++.|++||.|.+|.|+++. ++|+|||.|.+.++|++|++.||+.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 345688999999843221 25789999999999999998763 5899999999999999999999999
Q ss_pred eecCeeeeeeccC
Q 043470 77 QLHGKMLRISWSC 89 (629)
Q Consensus 77 ~i~g~~i~I~~s~ 89 (629)
.+.|+.|++.|+.
T Consensus 79 ~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 79 WFAGKMITAAYVP 91 (114)
T ss_dssp EETTEECEEEEEC
T ss_pred EECCEEEEEEEEc
Confidence 9999999999875
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=6.8e-10 Score=95.84 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=73.4
Q ss_pred hcccceeeeecCCCC-CCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCC-HHHHHHHHHHhC--CceeCCeEEE
Q 043470 290 KYKGSNVYVKNIDDD-VTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSS-PEEASKAVNTFH--GYMLHRKPLY 365 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~-~~~A~~A~~~l~--~~~~~g~~l~ 365 (629)
-..|+.|||+||++. +++++|+++|+.||.|..|.+..+.. +|||.|.+ .++|..|+..+| +..|.|..+.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 457899999999999 99999999999999999999998754 69999999 899999999995 7889999999
Q ss_pred EEeccchHHHH
Q 043470 366 VAIAQRKEDRQ 376 (629)
Q Consensus 366 v~~a~~k~~~~ 376 (629)
+++..-.+++.
T Consensus 90 ~evL~GeeE~~ 100 (121)
T 1owx_A 90 WEVLEGEVEKE 100 (121)
T ss_dssp EEECCHHHHHH
T ss_pred EEECCCHHHHH
Confidence 99887666654
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=7.7e-10 Score=89.35 Aligned_cols=74 Identities=20% Similarity=0.330 Sum_probs=63.4
Q ss_pred hcccceeeeecCC----CCCCH----HHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 043470 290 KYKGSNVYVKNID----DDVTD----EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR 361 (629)
Q Consensus 290 ~~~~~~l~V~nl~----~~~t~----~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g 361 (629)
.++..+|+|.-.+ .++.+ .+|.+.|+.||+|..++++.| .+||+|.+.++|.+|++ |||..++|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 3456678887776 23444 779999999999999999987 38999999999999998 99999999
Q ss_pred eEEEEEeccc
Q 043470 362 KPLYVAIAQR 371 (629)
Q Consensus 362 ~~l~v~~a~~ 371 (629)
|.|+|+++.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999999875
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=3.9e-09 Score=91.07 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHhcC--CceecCeee
Q 043470 8 ATTPASLYVGDLHPD-VTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLS-PHDAIRAIEVKN--HTQLHGKML 83 (629)
Q Consensus 8 ~~~~~sLyV~nLp~~-~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~-~~~A~~Al~~ln--~~~i~g~~i 83 (629)
-.+++.|||+||+.+ +++++|+++|+.||.|..|.+.+|.. .|||.|.+ ..+|+.|++.|| +..|+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 356889999999999 99999999999999999999999866 49999999 899999999995 668888877
Q ss_pred eeeccC
Q 043470 84 RISWSC 89 (629)
Q Consensus 84 ~I~~s~ 89 (629)
++....
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 775443
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.86 E-value=3.6e-09 Score=103.04 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHhcCCCeEEEEEeeCC-----CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccch
Q 043470 304 DVTDEELKAHFSQCGTITSAKVMRDE-----KGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 372 (629)
Q Consensus 304 ~~t~~~l~~~F~~~G~v~~~~v~~~~-----~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~k 372 (629)
.-.+++|++.|++||.|.+++|.++. ++.++||+||+|.+.++|.+|+..|||+.++||.|.|.+....
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 34678999999999999999998764 3489999999999999999999999999999999999998643
No 383
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=7.9e-09 Score=83.45 Aligned_cols=74 Identities=20% Similarity=0.381 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCC----CC-CH---HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC
Q 043470 9 TTPASLYVGDLHP----DV-TD---GELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG 80 (629)
Q Consensus 9 ~~~~sLyV~nLp~----~~-te---~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g 80 (629)
++..+|.|.-++. +. ++ .+|.+.|+.||.|.+||+..|. +||.|.+.++|.+|++ ||+..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4445999988772 23 32 6789999999999999999874 8999999999999998 99999999
Q ss_pred eeeeeeccCCC
Q 043470 81 KMLRISWSCRD 91 (629)
Q Consensus 81 ~~i~I~~s~~~ 91 (629)
|.|+|.+...+
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999977654
No 384
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=4.8e-09 Score=85.05 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=63.1
Q ss_pred hcccceeeeecCCCC-----CCH----HHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 043470 290 KYKGSNVYVKNIDDD-----VTD----EELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLH 360 (629)
Q Consensus 290 ~~~~~~l~V~nl~~~-----~t~----~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~ 360 (629)
.++..+|+|.-++.. +.+ .+|.+.|+.||+|..+++..|+ +||+|.+.++|.+|++ |||..++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 456778999988632 333 6689999999999999999883 9999999999999998 9999999
Q ss_pred CeEEEEEecc
Q 043470 361 RKPLYVAIAQ 370 (629)
Q Consensus 361 g~~l~v~~a~ 370 (629)
||.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999999865
No 385
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.65 E-value=4.3e-08 Score=95.36 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHhcCCCeeEEEEeecCCC----CCcceEEEEEeCCHHHHHHHHHhcCCceec
Q 043470 9 TTPASLYVGDLHP-----DVTDGELFDAFSEFKSLASVRVCKDSTT----GRSTCYGYVNFLSPHDAIRAIEVKNHTQLH 79 (629)
Q Consensus 9 ~~~~sLyV~nLp~-----~~te~~L~~~Fs~~G~V~si~v~rd~~t----~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~ 79 (629)
..++.+.+.++-. +-.+++|++.|++||.|.+|.|+++..+ ++++|++||+|.+.++|.+|++.||+..+.
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 3445555555532 3456799999999999999999976544 489999999999999999999999999999
Q ss_pred CeeeeeeccC
Q 043470 80 GKMLRISWSC 89 (629)
Q Consensus 80 g~~i~I~~s~ 89 (629)
||.|++.++.
T Consensus 202 gr~i~~~~~~ 211 (222)
T 3dxb_A 202 GRKVVAEVYD 211 (222)
T ss_dssp SSBCEEEECC
T ss_pred CeEEEEEEcC
Confidence 9999999875
No 386
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=3.6e-08 Score=79.91 Aligned_cols=73 Identities=19% Similarity=0.383 Sum_probs=62.7
Q ss_pred CCCCCCeEEEcCCCCC------CCH---HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCce
Q 043470 7 TATTPASLYVGDLHPD------VTD---GELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQ 77 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~------~te---~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~ 77 (629)
-.++..||.|.-++.+ .++ .+|.+.|+.||.|..||+..|. +||+|.+.++|.+||+ ||+..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 4556669999988743 332 4689999999999999999884 8999999999999998 99999
Q ss_pred ecCeeeeeecc
Q 043470 78 LHGKMLRISWS 88 (629)
Q Consensus 78 i~g~~i~I~~s 88 (629)
+.|+.|+|.+.
T Consensus 82 v~Gr~L~V~~k 92 (95)
T 1ufw_A 82 VKGRAVKISGP 92 (95)
T ss_dssp ETTEEEEEECC
T ss_pred eCCeEEEEecc
Confidence 99999999864
No 387
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.3e-06 Score=70.59 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=67.5
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhcC-----CCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQC-----GTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~~-----G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 366 (629)
..++|-+-||||.+++..|+.+.++| |.|+.+.+..|..| |+|+|.+...|-+|.-.|+|..|.||.|+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-----Aivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-----AIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-----EEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-----eEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 36789999999999999999999999 99999999998654 999999999999999999999999999998
Q ss_pred Eec
Q 043470 367 AIA 369 (629)
Q Consensus 367 ~~a 369 (629)
.=.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 754
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=6.6e-05 Score=61.61 Aligned_cols=89 Identities=25% Similarity=0.296 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC-----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeee
Q 043470 9 TTPASLYVGDLHPDVTDGELFDAFSEF-----KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKML 83 (629)
Q Consensus 9 ~~~~sLyV~nLp~~~te~~L~~~Fs~~-----G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i 83 (629)
....+|.|.|||++++++.|.-+|+.- |+|.+|.... +-|+|.|.+.+.|++.|+. ....|+|.++
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 346799999999999999999999872 5999988764 2599999999999999974 4668888888
Q ss_pred eeeccCCCCCcccCCcccccccccchhhh
Q 043470 84 RISWSCRDPDARKSGVANLFVKNLIESID 112 (629)
Q Consensus 84 ~I~~s~~~~~~~~s~~~~v~V~nLp~~it 112 (629)
.|.-.. .....++++.+|++.++
T Consensus 77 sV~P~~------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAP------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECC------CCCCCCCCCCSCCCCCC
T ss_pred EEEcCC------CCCcceEeeecCCCCCC
Confidence 886322 12236789999998764
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=4.8e-05 Score=62.75 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=64.0
Q ss_pred CCeEEEcCCCCCCCH-----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeee
Q 043470 11 PASLYVGDLHPDVTD-----GELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRI 85 (629)
Q Consensus 11 ~~sLyV~nLp~~~te-----~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I 85 (629)
..+|+|.||+.++-. +.++++|..|+++.+....+. ..=.-|+|.+.++|.+|...|++..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 358999999986522 578999999999999887764 334799999999999999999999999999999
Q ss_pred eccCCC
Q 043470 86 SWSCRD 91 (629)
Q Consensus 86 ~~s~~~ 91 (629)
.|.+..
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998843
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=0.00011 Score=60.57 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=62.9
Q ss_pred cceeeeecCCCCC-C----HHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 043470 293 GSNVYVKNIDDDV-T----DEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVA 367 (629)
Q Consensus 293 ~~~l~V~nl~~~~-t----~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 367 (629)
.++|+|.||+.++ + .+.++++|..|+.+.+...++. -.-..|.|.++++|.+|...||+..|+|+.++|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4689999998865 2 2678999999999988887764 2247899999999999999999999999999999
Q ss_pred ecc
Q 043470 368 IAQ 370 (629)
Q Consensus 368 ~a~ 370 (629)
|++
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 997
No 391
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00041 Score=57.33 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC-----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeee
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEF-----KSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLR 84 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~-----G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~ 84 (629)
..++|-+-+||..++.+.|+.+++.+ |.|..|.+..|-. =|+|+|.+..+|-+|.=.|++..|.|+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 36899999999999999999999999 9999999988733 499999999999999988999999999999
Q ss_pred ee
Q 043470 85 IS 86 (629)
Q Consensus 85 I~ 86 (629)
+-
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 84
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.39 E-value=0.00059 Score=55.33 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=58.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHhcCCceec
Q 043470 12 ASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGR--STCYGYVNFLSPHDAIRAIEVKNHTQLH 79 (629)
Q Consensus 12 ~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~--s~G~AfV~F~~~~~A~~Al~~ln~~~i~ 79 (629)
..|.|++||+.+||+++.+.++.+..+.....+..+.+.+ ...-|||+|.+.+++....+.+++..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4789999999999999999999999888888776654433 3467999999999999999999988665
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.0073 Score=49.52 Aligned_cols=70 Identities=26% Similarity=0.336 Sum_probs=58.2
Q ss_pred ccceeeeecCCCCCCHHHHHHHHhc---C--CCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 043470 292 KGSNVYVKNIDDDVTDEELKAHFSQ---C--GTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYV 366 (629)
Q Consensus 292 ~~~~l~V~nl~~~~t~~~l~~~F~~---~--G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v 366 (629)
.+++|.|.|||..++++.|.-+|+. - |.|.+++... +-|+|+|.+.+.|.+.++. ....|++-+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 4678999999999999999999987 2 5899988865 3689999999999999972 256788888888
Q ss_pred Eec
Q 043470 367 AIA 369 (629)
Q Consensus 367 ~~a 369 (629)
.-.
T Consensus 79 ~P~ 81 (104)
T 2dhx_A 79 RPA 81 (104)
T ss_dssp EEC
T ss_pred EcC
Confidence 754
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.59 E-value=0.0052 Score=49.77 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=47.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKN 74 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln 74 (629)
.+.....++| +.|++....||+++|+.||. ..|+=+-| | .|||.|.+++.|..|+..++
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET--T-----EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 3444557777 99999999999999999984 34554545 2 59999999999999998764
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.43 E-value=0.008 Score=50.96 Aligned_cols=73 Identities=8% Similarity=0.078 Sum_probs=56.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecC-eeeee
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHG-KMLRI 85 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g-~~i~I 85 (629)
+....+-|.|-+.|++. -..|.+.|++||.|++..... ...+-+|.|.+..+|++||.. |+..|.| -.|-|
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV 91 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGV 91 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEE
Confidence 33446788999999885 567778899999999887632 234899999999999999975 9998875 44555
Q ss_pred ec
Q 043470 86 SW 87 (629)
Q Consensus 86 ~~ 87 (629)
.+
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.37 E-value=0.0036 Score=51.03 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=51.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHhcCCceec
Q 043470 10 TPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGR--STCYGYVNFLSPHDAIRAIEVKNHTQLH 79 (629)
Q Consensus 10 ~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~--s~G~AfV~F~~~~~A~~Al~~ln~~~i~ 79 (629)
.+-.|.|+.||+.+||+++.+.++.+=++.....+..+.+.+ ...-|||+|.+.++.....+.+++..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 355899999999999999988887764444333333322221 2356899999999999999999998764
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.34 E-value=0.022 Score=48.20 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=61.1
Q ss_pred cccceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEec
Q 043470 291 YKGSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHR-KPLYVAIA 369 (629)
Q Consensus 291 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g-~~l~v~~a 369 (629)
...+.|.|-+.+... -+.|..+|++||+|.+..... ...+..|.|.++.+|.+||. .||..|+| -.|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 345688999998885 666889999999999888722 23499999999999999996 69999985 67777776
Q ss_pred cchHH
Q 043470 370 QRKED 374 (629)
Q Consensus 370 ~~k~~ 374 (629)
..+..
T Consensus 95 ~d~~v 99 (119)
T 1wwh_A 95 IDKNV 99 (119)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 54444
No 398
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.14 E-value=0.028 Score=45.44 Aligned_cols=67 Identities=16% Similarity=0.309 Sum_probs=55.7
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCC---CCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEK---GINKGFGFVCFSSPEEASKAVNTFHGYMLH 360 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~---g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~ 360 (629)
++|.|++||...|++++.+.++....+.......... -..-.-|+|.|.+.+++....+.++|..|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999999999887777765431 122346999999999999999999998873
No 399
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.02 E-value=0.015 Score=47.09 Aligned_cols=53 Identities=30% Similarity=0.387 Sum_probs=43.1
Q ss_pred eeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~ 355 (629)
.++| ++|.++.-.||.++|+.||.|. |+-+.|. -|||.|.+++.|..|+..++
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 4556 9999999999999999998543 4444442 69999999999999998763
No 400
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.79 E-value=0.008 Score=48.82 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=44.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 043470 13 SLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKN 74 (629)
Q Consensus 13 sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln 74 (629)
.++| +.|++....||+++|+.|| -..|+=+-| | .|||.|.+++.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 5667 9999999999999999999 344555555 3 59999999999999999765
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.58 E-value=0.0048 Score=65.35 Aligned_cols=56 Identities=9% Similarity=0.154 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHh
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEV 72 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ 72 (629)
.|||+|. .|.++++.+|.++|++||+|.++...++.. -||.|+|.+.+++..+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 3799997 799999999999999999999998887643 5999999999999988764
No 402
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.08 E-value=0.023 Score=46.10 Aligned_cols=53 Identities=30% Similarity=0.388 Sum_probs=43.8
Q ss_pred eeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~ 355 (629)
.++| ++|.++.-.||.++|+.||.| .|+-+.|. -|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 4566 999999999999999999943 44555552 69999999999999999774
No 403
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.65 E-value=0.069 Score=45.84 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=54.7
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCeEE-EEEeeCC-------------CC-CeeeEEEEEeCCHHHHHHHHHHhCCce
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTITS-AKVMRDE-------------KG-INKGFGFVCFSSPEEASKAVNTFHGYM 358 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-~~v~~~~-------------~g-~~kg~~fV~f~~~~~A~~A~~~l~~~~ 358 (629)
+.|.|-+.|.+. ...+-+.|++||.|.+ ..+.++. .+ ....+..|+|++..+|.+|+. .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 457777776554 4557789999999865 2221100 00 134688999999999999996 79999
Q ss_pred eCCeEEEEEecc
Q 043470 359 LHRKPLYVAIAQ 370 (629)
Q Consensus 359 ~~g~~l~v~~a~ 370 (629)
|+|.-|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888875
No 404
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.37 E-value=0.25 Score=40.16 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=54.5
Q ss_pred cceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCC--CC-CeeeEEEEEeCCHHHHHHHHHHhCCceeCC-----eEE
Q 043470 293 GSNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDE--KG-INKGFGFVCFSSPEEASKAVNTFHGYMLHR-----KPL 364 (629)
Q Consensus 293 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~--~g-~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g-----~~l 364 (629)
+-.|.|+.||...|++++.+.++..-.+......... .+ ..-.-|+|.|.+.++...-.+.++|..|-+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4579999999999999999998876554332222211 11 111348999999999999999999988732 244
Q ss_pred EEEec
Q 043470 365 YVAIA 369 (629)
Q Consensus 365 ~v~~a 369 (629)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56665
No 405
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.80 E-value=0.082 Score=55.99 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=41.5
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNT 353 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~ 353 (629)
+.|+|. .+..+++.+|.++|++||.|.++....+ . .-|+.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~---g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-F---GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-S---SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-C---CeEEEEEeCCHHHHHHHHhc
Confidence 579997 6889999999999999999999988765 2 25999999999999977653
No 406
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.89 E-value=0.28 Score=42.11 Aligned_cols=76 Identities=14% Similarity=0.254 Sum_probs=51.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecCC--------CC-----CcceEEEEEeCCHHHHHHHHHhcCCc
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLAS-VRVCKDST--------TG-----RSTCYGYVNFLSPHDAIRAIEVKNHT 76 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~s-i~v~rd~~--------t~-----~s~G~AfV~F~~~~~A~~Al~~ln~~ 76 (629)
...|.|-+.|++. ...+.+.|++||.|++ +.+.++.. ++ ....+..|.|.+..+|.+||.. |+.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 3456677776554 4566688999998865 22221100 00 1246789999999999999975 999
Q ss_pred eecCeeeeeecc
Q 043470 77 QLHGKMLRISWS 88 (629)
Q Consensus 77 ~i~g~~i~I~~s 88 (629)
.|.|.-|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999976666543
No 407
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.09 E-value=2.4 Score=45.64 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=46.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Q 043470 11 PASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT 76 (629)
Q Consensus 11 ~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~ 76 (629)
...++|+ +|..+...+|+++|+.||. .+|+-+-| | .|||.|.+.++|..+++.++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd--t-----~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD--T-----SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS--S-----EEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC--C-----eEEEEECCHHHHHHHHHHHHhC
Confidence 4577787 8999999999999999994 45554433 2 5999999999999999987643
No 408
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=80.05 E-value=0.35 Score=51.00 Aligned_cols=9 Identities=56% Similarity=0.888 Sum_probs=4.4
Q ss_pred ccccccccc
Q 043470 100 ANLFVKNLI 108 (629)
Q Consensus 100 ~~v~V~nLp 108 (629)
.++++-||.
T Consensus 69 ~~~ll~~La 77 (448)
T 2z73_A 69 ANMFIINLA 77 (448)
T ss_dssp THHHHHHHH
T ss_pred cchHHHHHH
Confidence 345555544
No 409
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=69.20 E-value=8.2 Score=41.42 Aligned_cols=54 Identities=30% Similarity=0.372 Sum_probs=43.0
Q ss_pred ceeeeecCCCCCCHHHHHHHHhcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 043470 294 SNVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355 (629)
Q Consensus 294 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~ 355 (629)
..++|+ ++..+...+|.+.|+.||.| +|+-+.+ -.|||.|.+.+.|..+++.++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 345665 88888999999999999954 4444433 269999999999999999885
No 410
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=52.82 E-value=14 Score=28.10 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHhcCC-----CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 043470 304 DVTDEELKAHFSQCG-----TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQ 370 (629)
Q Consensus 304 ~~t~~~l~~~F~~~G-----~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 370 (629)
.++..+|...+..-+ .|-.+.+..+ |.||+-.. +.|..+++.|++..+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 456666766665443 5677888665 88999887 67888999999999999999988764
No 411
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.39 E-value=67 Score=25.17 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=43.0
Q ss_pred eeeeecCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHH
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQ-CG-TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVN 352 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~ 352 (629)
+-|+-.++...+..+|++.++. || .|.+|..+..+.|.. -|+|++..-.+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~K--KA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEK--KAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCE--EEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCce--EEEEEcCCCCcHHHHHH
Confidence 5677778889999999999987 66 778888877665533 48999988777776554
No 412
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=27.99 E-value=67 Score=19.11 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 043470 591 ESLAVKVEEAVQVLKLSEA 609 (629)
Q Consensus 591 ~~l~~~~~~a~~~~~~~~~ 609 (629)
++|+.||+|--++|+..+.
T Consensus 9 ~lLKKKIEEQr~i~~~~~H 27 (29)
T 3lcn_C 9 KLLKKKIEEQREILQKTHH 27 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 6799999999999987654
No 413
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=25.23 E-value=1.2e+02 Score=26.05 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=41.5
Q ss_pred eeeeecCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHH
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQ-CG-TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVN 352 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~ 352 (629)
+-|+--++...+..+|++.++. || .|.+|..+..+.|.- -|+|++....+|.....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTK--KAYVRLTADYDALDIAN 137 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCE--EEEEEECTTCCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCce--EEEEEeCCCCcHHHHHH
Confidence 4666777888999999998877 56 678888877666543 48899887666666544
No 414
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=24.53 E-value=1.3e+02 Score=26.25 Aligned_cols=56 Identities=14% Similarity=0.290 Sum_probs=41.6
Q ss_pred eeeeecCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHH
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQ-CG-TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVN 352 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~ 352 (629)
+-|+--++...+..+|++.++. || .|.+|..+..++|.- -|||++....+|.....
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~K--KAyV~La~~~dAldvAn 145 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNK--KAYIRLAADSDSLTLAN 145 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCE--EEEEEECSSSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcE--EEEEEcCCCCcHHHHHH
Confidence 4666677888999999998877 56 678888877766543 48899887666666544
No 415
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.95 E-value=69 Score=35.40 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=42.8
Q ss_pred cCCCCCCHHHHHHHH----hcCCCeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 043470 300 NIDDDVTDEELKAHF----SQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFH 355 (629)
Q Consensus 300 nl~~~~t~~~l~~~F----~~~G~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~~l~ 355 (629)
....+.+--||+.+| ..+|.|+++.+-.-+.-..+.++++.|.+.++|..++..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 334444445788888 36899999988766555677889999999999999998764
No 416
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=23.03 E-value=2.7e+02 Score=21.66 Aligned_cols=71 Identities=8% Similarity=0.104 Sum_probs=0.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCc-------eec
Q 043470 7 TATTPASLYVGDLHPDVTDGELFDAFSEFKSLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHT-------QLH 79 (629)
Q Consensus 7 ~~~~~~sLyV~nLp~~~te~~L~~~Fs~~G~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~-------~i~ 79 (629)
+....|-|.|-|+|..+-.+++.-...-.|.---+.-+.. .|.+.|.+.++-..|+..|-.. .|.
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyidg--------qamirfqnsdeqrlaiqkllnhnnnklqieir 79 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG--------QAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIR 79 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS--------CEEEEESSHHHHHHHHHHHEETTTTEEEEEET
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC--------eeEEEecCChHHHHHHHHHHhcCCCEEEEEEc
Q ss_pred Ceeeee
Q 043470 80 GKMLRI 85 (629)
Q Consensus 80 g~~i~I 85 (629)
|..|.|
T Consensus 80 gqicdv 85 (129)
T 4eyt_A 80 GQICDV 85 (129)
T ss_dssp TEEEEE
T ss_pred ceeeee
No 417
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=21.88 E-value=69 Score=23.95 Aligned_cols=58 Identities=14% Similarity=0.368 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHhcCC-----CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhcCCceecCeeeeeecc
Q 043470 22 DVTDGELFDAFSEFK-----SLASVRVCKDSTTGRSTCYGYVNFLSPHDAIRAIEVKNHTQLHGKMLRISWS 88 (629)
Q Consensus 22 ~~te~~L~~~Fs~~G-----~V~si~v~rd~~t~~s~G~AfV~F~~~~~A~~Al~~ln~~~i~g~~i~I~~s 88 (629)
.++..+|..++..-+ .|-.|+|..+ |.||+-.. +.|..+++.|+...++|+.++|..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 456667777776554 3556777543 78988654 4578888899999999999988654
No 418
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=21.13 E-value=1.5e+02 Score=23.13 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=39.0
Q ss_pred eeeeecCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHH
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQ-CG-TITSAKVMRDEKGINKGFGFVCFSSPEEASK 349 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~ 349 (629)
+-|+-.++...+.-+|++.++. || .|.+|.-+.-+.|.. -|+|++..-++|..
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~K--KA~VtL~~g~~aid 77 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEK--KAVVRLSEDDDAQE 77 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSE--EEEEEECTTSCHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCce--EEEEEECCCCcHHH
Confidence 5677778889999999999987 56 778888777655432 47888876655544
No 419
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=21.03 E-value=81 Score=23.49 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=30.1
Q ss_pred cchhh-hhccCChHHHHHhcCChHHHHHHHHHHHHHHHHHHhc
Q 043470 569 AKITG-MLLEMDNSELLLLLESPESLAVKVEEAVQVLKLSEAK 610 (629)
Q Consensus 569 ~kitg-m~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~ 610 (629)
..|+| .||.|+.++|-.|==..---+.||-.|+.-|+....+
T Consensus 31 ~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~~~ek 73 (74)
T 2gle_A 31 QNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMSLEK 73 (74)
T ss_dssp TTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHHHHHH
T ss_pred cCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 45666 7889999997665334345688888999988876543
No 420
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=20.58 E-value=41 Score=23.41 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.4
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 043470 581 SELLLLLESPESLAVKVEEAV 601 (629)
Q Consensus 581 ~~~~~~~~~~~~l~~~~~~a~ 601 (629)
+-|++||.+++.+-.++-||+
T Consensus 18 qaLihLIqnD~~Fl~~IHeAY 38 (51)
T 2wx3_A 18 DTLIHLIKNDSSFLSTLHEVY 38 (51)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 457899999999999999986
No 421
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=20.22 E-value=1.2e+02 Score=26.45 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=41.1
Q ss_pred eeeeecCCCCCCHHHHHHHHhc-CC-CeEEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHH
Q 043470 295 NVYVKNIDDDVTDEELKAHFSQ-CG-TITSAKVMRDEKGINKGFGFVCFSSPEEASKAVN 352 (629)
Q Consensus 295 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~~~v~~~~~g~~kg~~fV~f~~~~~A~~A~~ 352 (629)
+-|+-.++...+..+|++.++. || .|.+|..+..++|.- -|||++....+|.....
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKK--KAYVKLTPDYDALDVAN 147 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSE--EEEEEECTTSCHHHHHG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCce--EEEEEcCCCCcHHHHHH
Confidence 4666677788999999988877 55 678888877665543 48999987767666543
Done!