BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043471
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 144/225 (64%), Gaps = 4/225 (1%)
Query: 239 QQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGD 298
+ FL+N QY G+ YE +FG ++S+GG+E TK+ ++ ++L KVLD+G G+GGG
Sbjct: 11 KTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGC 70
Query: 299 FYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358
Y+ +K+ H GID+ N+++ A ER G + FE D K +PEN+FD+IYSRD
Sbjct: 71 MYINEKYGAHTHGIDICSNIVNMANERVSG-NNKIIFEANDILTKEFPENNFDLIYSRDA 129
Query: 359 ILH--IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQRGYDLHDVKSY 415
ILH +++K LF+ +KWLKP GT+LI+DYC + EF EY+KQR Y L V+ Y
Sbjct: 130 ILHLSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEY 189
Query: 416 GQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
+L F +++++D ++ + Q+L+ E + ++K+ F+K FSE
Sbjct: 190 ADILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKLFSE 234
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIK-KNEEVNGH 98
E ++LS + E VL+ G+G+G + +K G H +D +++ NE V+G+
Sbjct: 42 EATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN 101
Query: 99 FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158
+ F D+ + + F E++ D+++S +++LS + KL ++ KWLK G +
Sbjct: 102 -NKIIFEANDILTKE--FPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLIT 158
Query: 159 ESC 161
+ C
Sbjct: 159 DYC 161
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 144/225 (64%), Gaps = 4/225 (1%)
Query: 239 QQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGD 298
+ FL+N QY G+ YE +FG ++S+GG+E TK+ ++ ++L KVLD+G G+GGG
Sbjct: 11 KTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGC 70
Query: 299 FYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358
Y+ +K+ H GID+ N+++ A ER G + FE D K +PEN+FD+IYSRD
Sbjct: 71 XYINEKYGAHTHGIDICSNIVNXANERVSG-NNKIIFEANDILTKEFPENNFDLIYSRDA 129
Query: 359 ILH--IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQRGYDLHDVKSY 415
ILH +++K LF+ +KWLKP GT+LI+DYC + EF EY+KQR Y L V+ Y
Sbjct: 130 ILHLSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEY 189
Query: 416 GQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
+L F +++++D ++ + Q+L+ E + ++K+ F+K FSE
Sbjct: 190 ADILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKLFSE 234
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKK-NEEVNGH 98
E ++LS + E VL+ G+G+G + +K G H +D +++ NE V+G+
Sbjct: 42 EATKKILSDIELNENSKVLDIGSGLGGGCXYINEKYGAHTHGIDICSNIVNXANERVSGN 101
Query: 99 FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158
+ F D+ + + F E++ D+++S +++LS + KL ++ KWLK G +
Sbjct: 102 -NKIIFEANDILTKE--FPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLIT 158
Query: 159 ESC 161
+ C
Sbjct: 159 DYC 161
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 144/225 (64%), Gaps = 4/225 (1%)
Query: 239 QQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGD 298
+ FL+N Q+ G+ YE +FG ++S+GG+E TK+ ++ ++L KVLD+G G+GGG
Sbjct: 11 KTFLENNQFTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGC 70
Query: 299 FYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358
Y+ +K+ H GID+ N+++ A ER G + FE D K +PEN+FD+IYSRD
Sbjct: 71 MYINEKYGAHTHGIDICSNIVNMANERVSG-NNKIIFEANDILTKEFPENNFDLIYSRDA 129
Query: 359 ILH--IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQRGYDLHDVKSY 415
ILH +++K LF+ +KWLKP GT+LI+DYC + EF EY+KQR Y L V+ Y
Sbjct: 130 ILHLSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEY 189
Query: 416 GQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
+L F +++++D ++ + Q+L+ E + ++K+ F+K FSE
Sbjct: 190 ADILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKLFSE 234
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIK-KNEEVNGH 98
E ++LS + E VL+ G+G+G + +K G H +D +++ NE V+G+
Sbjct: 42 EATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN 101
Query: 99 FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158
+ F D+ + + F E++ D+++S +++LS + KL ++ KWLK G +
Sbjct: 102 -NKIIFEANDILTKE--FPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLIT 158
Query: 159 ESC 161
+ C
Sbjct: 159 DYC 161
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 143/225 (63%), Gaps = 4/225 (1%)
Query: 239 QQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGD 298
+ FL+N QY G+ YE +FG ++S+GG+E TK+ ++ ++L KVLD+G G+GGG
Sbjct: 11 KTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGC 70
Query: 299 FYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358
Y+ +K+ H GID+ N+++ A ER G + FE D K +PEN+FD+IYSRD
Sbjct: 71 MYINEKYGAHTHGIDICSNIVNMANERVSG-NNKIIFEANDILTKEFPENNFDLIYSRDA 129
Query: 359 I--LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQRGYDLHDVKSY 415
I L +++K LF+ +KWLKP GT+LI+DYC + EF EY+KQR Y L V+ Y
Sbjct: 130 ILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEY 189
Query: 416 GQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
+L F +++++D ++ + Q+L+ E + ++K+ F+K FSE
Sbjct: 190 ADILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKLFSE 234
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIK-KNEEVNGH 98
E ++LS + E VL+ G+G+G + +K G H +D +++ NE V+G+
Sbjct: 42 EATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN 101
Query: 99 FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158
+ F D+ + + F E++ D+++S ++ LS + KL ++ KWLK G +
Sbjct: 102 -NKIIFEANDILTKE--FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLIT 158
Query: 159 ESC 161
+ C
Sbjct: 159 DYC 161
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GL 329
T E +A LD++ G +VLDVGCGIG +A DV V GI +S ++ A RA GL
Sbjct: 50 TDEXIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL 109
Query: 330 KCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388
V F AD + + SFD +++ +++ H D+ + + L+PGGTV I+D+
Sbjct: 110 ANRVTFSYADAXDLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADFV 168
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG 328
IET + + K K G KVLD+ CG+GG F + D + VVG+D+S + I A E A
Sbjct: 25 IETLEPLLXKYXKKRG-KVLDLACGVGGFSFLLED-YGFEVVGVDISEDXIRKAREYAKS 82
Query: 329 LKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGG 380
+ +VEF V D K ++ + +FD + D+I+H + + +FK + LKP G
Sbjct: 83 RESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG 136
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 36 SDLDKEE---RPEVL-SLLPPYEGK--TVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI 89
+D++ +E R E L LL Y K VL+ G+G F+ L V+ +D + I
Sbjct: 14 TDINSQEYRSRIETLEPLLXKYXKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDXI 73
Query: 90 KKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKW 148
+K E E NV+F+ D + L+F + + D + +++ E+ ++ + + +
Sbjct: 74 RKAREYAKSRESNVEFIVGD--ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRV 131
Query: 149 LKVGG 153
LK G
Sbjct: 132 LKPSG 136
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 265 STGGIETTKEFVAKLDLKP---GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISF 321
S G++ E+ A P G +++D+GCG G + + +V+G+DLS ++
Sbjct: 22 SIEGLDGAAEWPALRAXLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLAR 81
Query: 322 ALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGT 381
A RA G + +E AD K P++SFD+ YS + +++D LF++ + L PGG
Sbjct: 82 A--RAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGH 139
Query: 382 VLISDYCKSFGTPS 395
+ S + P+
Sbjct: 140 FVFSTEHPIYXAPA 153
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 283 PGQKVLDVGCGIGGGDFYMA-DKFDVHVVGIDLSINMISFALERA--IGLKCSVEFEVAD 339
PG KVL+ GCGIG +A + D + ID+S + A E G+K +V+F A+
Sbjct: 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQAN 95
Query: 340 CTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI------SDYCKSFGT 393
+ ++SFD I+ + H+Q KS K LKPGGT+ + S Y G
Sbjct: 96 IFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGK 155
Query: 394 PSVE-FSEYIKQRGYDLHDV---KSYGQMLKDAGFVDIIAEDR 432
++E ++ I+ + Y + + +L+++GF I E R
Sbjct: 156 KAIEAWNCLIRVQAYXKGNSLVGRQIYPLLQESGFEKIRVEPR 198
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 19/150 (12%)
Query: 27 EAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDF 84
EA+ L +A L+K + ++ PP G VLE G GIG T LAK + ++D
Sbjct: 14 EALRLSEQAETLEKLLHHD--TVYPP--GAKVLEAGCGIGAQTVILAKNNPDAEITSIDI 69
Query: 85 IDSVIKK---NEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKL 141
++K N E NG +NVKF+ A++ S L F + S D +F ++L +L E+
Sbjct: 70 SPESLEKARENTEKNG-IKNVKFLQANIFS--LPFEDSSFDHIFVCFVLEHLQSP--EEA 124
Query: 142 AERMVKWLKVGGYIFFRE----SC-FHQSG 166
+ + K LK GG I E SC FH G
Sbjct: 125 LKSLKKVLKPGGTITVIEGDHGSCYFHPEG 154
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 14/189 (7%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSI--NMISFALERAIGLKCSVEFEVA 338
L+ K LD+G G GG ++ KF V + ++++ N + GL ++ +
Sbjct: 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG 139
Query: 339 DCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF 398
+ +NS+D I+S+D LH DK +F+ + LKP G I+D K G
Sbjct: 140 SFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVXAITDPXKEDGIDKSSI 199
Query: 399 SEYIKQRGYDLHDVKSYG---QMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFI 455
+ + LHD S G + K+ G V + R + V K K I
Sbjct: 200 QPILDR--IKLHDXGSLGLYRSLAKECGLVTLRTFSRPDSLVH-------HYSKVKAELI 250
Query: 456 KDFSEVFCF 464
K SE+ F
Sbjct: 251 KRSSEIASF 259
>pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A
Sam-dependent Methyltransferase Of The Duf858/pfam05891
Family
Length = 254
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 37 DLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVN 96
D+D E ++ LP + L+ GAGIGR T L K D ++ V EE
Sbjct: 76 DVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHXLEEAK 133
Query: 97 GHFENV---KFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGG 153
KF+ A + T ++ D++ W +YL+D + K + + L G
Sbjct: 134 RELAGXPVGKFILASXET--ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNG 191
Query: 154 YIFFRESCFHQSGDS--KRKHNPTHYREPRFYSKVFKECQIQ 193
YIFF+E+C +GD K + + R Y ++F E ++
Sbjct: 192 YIFFKENC--STGDRFLVDKEDSSLTRSDIHYKRLFNESGVR 231
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 13/129 (10%)
Query: 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALE---R 325
IE ++ F+A L + LD G GIG + K DL + + LE R
Sbjct: 79 IEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL---YATTDL-LEPVKHXLEEAKR 134
Query: 326 AIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFK----WLKPGGT 381
+ +F +A T P N++D+I + T +++ D A F FFK L P G
Sbjct: 135 ELAGXPVGKFILASXETATLPPNTYDLIVIQWTAIYLTD--ADFVKFFKHCQQALTPNGY 192
Query: 382 VLISDYCKS 390
+ + C +
Sbjct: 193 IFFKENCST 201
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADC 340
++PG+++ D+GCG G +AD ++ V G+DLS + A E+A V+F V D
Sbjct: 31 VEPGKRIADIGCGTGTATLLLADHYE--VTGVDLSEEXLEIAQEKAXETNRHVDFWVQDX 88
Query: 341 TKKTYPENSFDVIYSRDTILHIQ---DKPALFKSFFKWLKPGGTVL 383
+ PE + D++ ++Q D F S + L GG +L
Sbjct: 89 RELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 267 GGIETTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER 325
G E T++ V+ ++ L K+ D+GCG GG ++AD + GIDL + I E
Sbjct: 29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN 88
Query: 326 AIGLKCSVEFEVADCTKKTYP--ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVL 383
A+ C+ + + P D+I+S I +I + + + K+LK GG +
Sbjct: 89 AVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGM-NEWSKYLKKGGFIA 147
Query: 384 ISD 386
+S+
Sbjct: 148 VSE 150
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 267 GGIETTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER 325
G E T++ V+ ++ L K+ D+GCG GG ++AD + GIDL + I E
Sbjct: 35 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN 94
Query: 326 AIGLKCSVEFEVADCTKKTYP--ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVL 383
A+ C+ + + P D+I+S I +I + + + K+LK GG +
Sbjct: 95 AVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGM-NEWSKYLKKGGFIA 153
Query: 384 ISD 386
+S+
Sbjct: 154 VSE 156
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSIN 317
KLDLKPG +LD+GCG G ++FDV+V+G+ LS N
Sbjct: 85 KLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKN 124
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSIN 317
+ KL L+PG +LDVGCG G +K+DV+VVG+ LS N
Sbjct: 57 LGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKN 98
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSIN 317
+ KL L+PG +LDVGCG G +K+DV+VVG+ LS N
Sbjct: 57 LGKLGLQPGXTLLDVGCGWGATXXRAVEKYDVNVVGLTLSKN 98
>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Sam
pdb|4F85|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase
pdb|4F86|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|B Chain B, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|C Chain C, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|D Chain D, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|E Chain E, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|F Chain F, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|G Chain G, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|H Chain H, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|I Chain I, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|J Chain J, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|K Chain K, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|L Chain L, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
Length = 320
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 78/186 (41%), Gaps = 7/186 (3%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLKCSVEFEVA 338
+ PG ++D GCG GG +F V G+ LS F RA +G+ V V
Sbjct: 123 VGPGDTLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAAQAEFGNRRARELGIDDHVRSRVC 182
Query: 339 DCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC--KSFGTPSV 396
+ + + + ++ ++ +++ D +F ++L+ GG + C +G PS
Sbjct: 183 NMLDTPFEKGTVAASWNNESSMYV-DLHDVFAEHSRFLRVGGRYVTVTGCWNPRYGQPSK 241
Query: 397 EFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQV--LQRELDAIEKDKDAF 454
S+ ++H + Y + + D V D T + + L+ + ++AF
Sbjct: 242 WVSQINAHFECNIHSRREYLRAMADNRLVPQTVVDLTPETLPYWELRATSSLVTGIEEAF 301
Query: 455 IKDFSE 460
I+ + +
Sbjct: 302 IESYRD 307
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 285 QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT 344
++VLD+ CG G +A++ VVG+DL M+ A +A +EF D +
Sbjct: 43 RRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA 101
Query: 345 YPENSFDVI---YSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY-CKSFG 392
+ +N FD + +S +D LF + LKPGG V I+D+ C +G
Sbjct: 102 F-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG-VFITDFPCWFYG 151
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI----KKNEEVNGHFENVKFMCADV 109
E + VL+ G G T ELA++ V+ LD + ++ +K +E N E F+ DV
Sbjct: 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIE---FLQGDV 97
Query: 110 TSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSG 166
D+V M FS +MY ++++ KL ++ + LK GG C+ G
Sbjct: 98 LEIAFKNEFDAVTMFFST--IMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGG 152
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 26/183 (14%)
Query: 273 KEFVAKLDLKP--------GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFA-- 322
K + LDL P ++LD+GCG G +A K V GID++ I A
Sbjct: 12 KNIPSSLDLYPIIHNYLQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAET 70
Query: 323 LERAIGLK----CSVEFEVADCTKKTYPENSFDVIYSRDTILHIQD---KPALFKSFFKW 375
R+ GL EF+V + + ++ ++SFD + + + D + + K F+
Sbjct: 71 AARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRV 130
Query: 376 LKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQML---KDAGFVDIIAEDR 432
LKPG + + ++ +++ Y K+ +D K G L + G + IA
Sbjct: 131 LKPGAYLYLVEFGQNW-----HLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF 185
Query: 433 TEQ 435
TE+
Sbjct: 186 TEK 188
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 21/132 (15%)
Query: 44 PEVLSLLPPY-----EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIK-------- 90
P L L P E +L+ G G G+ + ELA K V +D I+
Sbjct: 15 PSSLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARS 74
Query: 91 --KNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSD-KEVEKLAERMVK 147
N++ G E F + +S L+F + S D L + D KE ++ + + +
Sbjct: 75 PGLNQKTGGKAE---FKVENASS--LSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFR 129
Query: 148 WLKVGGYIFFRE 159
LK G Y++ E
Sbjct: 130 VLKPGAYLYLVE 141
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSIN 317
+ KL+L+PG +LD+GCG G +K+DV+VVG+ LS N
Sbjct: 57 LGKLNLEPGMTLLDIGCGWGATMRRAIEKYDVNVVGLTLSEN 98
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 15/148 (10%)
Query: 267 GGIETTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER 325
G E T + ++ +D L + D+GCG GG +A + GID I +
Sbjct: 35 GSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKN 94
Query: 326 A--IGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVL 383
A + L+ V+ V ++ ++S D+I+S I +I + L K + +LKPGG +
Sbjct: 95 AEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGL-KEWRNYLKPGGYLA 153
Query: 384 ISDYCKSFGTPSVEFSEYIKQRGYDLHD 411
+S+ SV F++ QR ++HD
Sbjct: 154 VSE--------SVWFTD---QRPAEIHD 170
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 44 PEV----LSLLPPYEGKTVL-EFGAGIGRFTGELAKKA-GHVIALDFIDSVIK---KNEE 94
PEV LS + K+++ + G G G T LA+ G + +DF I+ KN E
Sbjct: 37 PEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAE 96
Query: 95 VNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGY 154
VK + + DL+F +DS+D+++S + + E+ + +LK GGY
Sbjct: 97 KLNLQNRVKGIVGSMD--DLSFEKDSLDLIWSEGAIYNIG---FERGLKEWRNYLKPGGY 151
Query: 155 IFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASGNSFELSLVGYKCIGAYV 214
+ ES + H+ F+ + E I ++ GY + ++
Sbjct: 152 LAVSESVWFTDQRPAEIHD--------FWMSAYTE--IDTVPNKVAQIQKAGYIPVATFI 201
Query: 215 KNKKNQNQICWI 226
+ CWI
Sbjct: 202 LPEN-----CWI 208
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 15/148 (10%)
Query: 267 GGIETTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER 325
G E T + ++ +D L + D+GCG GG +A + GID I +
Sbjct: 30 GSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKN 89
Query: 326 A--IGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVL 383
A + L+ V+ V ++ ++S D+I+S I +I + L K + +LKPGG +
Sbjct: 90 AEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFERGL-KEWRNYLKPGGYLA 148
Query: 384 ISDYCKSFGTPSVEFSEYIKQRGYDLHD 411
+S+ SV F++ QR ++HD
Sbjct: 149 VSE--------SVWFTD---QRPAEIHD 165
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 44 PEV----LSLLPPYEGKTVL-EFGAGIGRFTGELAKK-AGHVIALDFIDSVIK---KNEE 94
PEV LS + K+++ + G G G T LA+ G + +DF I+ KN E
Sbjct: 32 PEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAE 91
Query: 95 VNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGY 154
VK + + DL+F +DS+D+++S + + E+ + +LK GGY
Sbjct: 92 KLNLQNRVKGIVGSMD--DLSFEKDSLDLIWSEGAIYNIG---FERGLKEWRNYLKPGGY 146
Query: 155 IFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASGNSFELSLVGYKCIGAYV 214
+ ES + H+ F+ + E I ++ GY + ++
Sbjct: 147 LAVSESVWFTDQRPAEIHD--------FWMSAYTE--IDTVPNKVAQIQKAGYIPVATFI 196
Query: 215 KNKKNQNQICWI 226
+ CWI
Sbjct: 197 LPEN-----CWI 203
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI 327
KL+L+PG +LD+GCG G + ++DV+V+G+ LS N +A ++A+
Sbjct: 67 KLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSEN--QYAHDKAM 114
>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From
Mycobacterium Tuberculosis
Length = 287
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSIN 317
+ KL L+PG +LD+GCG G ++DV+VVG+ LS N
Sbjct: 57 LGKLGLQPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKN 98
>pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
Length = 312
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 5/147 (3%)
Query: 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC--SVEFEVADC 340
P ++D GCG GG +F V G+ LS F RA L+ V V +
Sbjct: 117 PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM 176
Query: 341 TKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC--KSFGTPSVEF 398
+ + + ++ ++ +++ D LF ++LK GG + C +G PS
Sbjct: 177 LDTPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWV 235
Query: 399 SEYIKQRGYDLHDVKSYGQMLKDAGFV 425
S+ ++H + Y + + D V
Sbjct: 236 SQINAHFECNIHSRREYLRAMADNRLV 262
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 19/121 (15%)
Query: 284 GQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFA-------LERAIGL--KC 331
G VLD+GCG G D Y+A K V+G+D+ N + A E+ G +
Sbjct: 84 GATVLDLGCGTGR-DVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRS 142
Query: 332 SVEF------EVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385
+V F +A + P++S D++ S +K ALFK + L+ GG + S
Sbjct: 143 NVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFS 202
Query: 386 D 386
D
Sbjct: 203 D 203
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 19/143 (13%)
Query: 54 EGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIK-KNEEVNGHFE--------- 100
EG TVL+ G G GR +L + G VI +D +D+ ++ + V H E
Sbjct: 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRS 142
Query: 101 NVKFMCADV----TSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIF 156
NV+F+ + T+ + SVD++ SN + ++K L + + + L+ GG ++
Sbjct: 143 NVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLA--LFKEIHRVLRDGGELY 200
Query: 157 FRESCFHQSGDSKRKHNPTHYRE 179
F + + + +P Y E
Sbjct: 201 FSDVYADRRLSEAAQQDPILYGE 223
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 285 QKVLDVGCGIGGGDFYMADKFDVHV---VGIDLSINMI----SFALERAIGLKCSVEFEV 337
+VLD+G G G + A F +V +G+D + + SFA E+ + +V F+
Sbjct: 23 HRVLDIGAGAG----HTALAFSPYVQECIGVDATKEXVEVASSFAQEKGVE---NVRFQQ 75
Query: 338 ADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387
+P++SFD+I R H D + + LK G L+ D+
Sbjct: 76 GTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH 125
>pdb|4DQ0|A Chain A, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|B Chain B, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|C Chain C, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|D Chain D, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
Length = 200
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 281 LKPGQKVLDVGCGIGGGDFYM-ADKFDVHVVGIDLSINMISFA-LERAIGLKC--SVEFE 336
+KPG K LD+GCG G Y+ A+ +DV N +S A +ER ++ ++
Sbjct: 32 VKPG-KTLDLGCGNGRNSLYLAANGYDVDA----WDKNAMSIANVERIKSIENLDNLHTR 86
Query: 337 VADCTKKTYPENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLI------SDYC 388
V D T+ + +D I S ++ ++ K P L + + KPGG LI +DY
Sbjct: 87 VVDLNNLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP 145
Query: 389 KSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRE 443
+ G P F E +R Y+ ++ Y + + + D +F +L R+
Sbjct: 146 CTVGFP-FAFKEGELRRYYEGWEMVKYNEDVGELHRTDANGNRIKLRFATMLARK 199
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENV 102
E + ++ P GKT L+ G G GR + LA V A D I E + + +N+
Sbjct: 27 EAVKVVKP--GKT-LDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNL 83
Query: 103 KFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGY 154
D+ +LTF + D + S +LM+L K + L M + K GGY
Sbjct: 84 HTRVVDLN--NLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY 132
>pdb|2XVA|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|C Chain C, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|D Chain D, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVM|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
pdb|2XVM|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
Length = 199
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 281 LKPGQKVLDVGCGIGGGDFYM-ADKFDVHVVGIDLSINMISFA-LERAIGLKC--SVEFE 336
+KPG K LD+GCG G Y+ A+ +DV N +S A +ER ++ ++
Sbjct: 31 VKPG-KTLDLGCGNGRNSLYLAANGYDVDA----WDKNAMSIANVERIKSIENLDNLHTR 85
Query: 337 VADCTKKTYPENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLI------SDYC 388
V D T+ + +D I S ++ ++ K P L + + KPGG LI +DY
Sbjct: 86 VVDLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP 144
Query: 389 KSFGTP 394
+ G P
Sbjct: 145 CTVGFP 150
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENV 102
E + ++ P GKT L+ G G GR + LA V A D I E + + +N+
Sbjct: 26 EAVKVVKP--GKT-LDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNL 82
Query: 103 KFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGY 154
D+ +LTF D + S +LM+L K + L M + K GGY
Sbjct: 83 HTRVVDLN--NLTFDR-QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY 131
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFA---LERAIGLKCSVEFE 336
+LKPG +L+VG G G +++ V I+ ++ FA LERA G+K +V
Sbjct: 88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA-GVK-NVHVI 145
Query: 337 VADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385
+ D +K P+ +DV I+ P + + + LK GG ++I
Sbjct: 146 LGDGSKGFPPKAPYDV------IIVTAGAPKIPEPLIEQLKIGGKLIIP 188
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDV-----HVVGIDLSINMISFALERA--IGLKCSV 333
LK G VLDVG G G FY+ + V ID+ M+++A E+ +GLK +V
Sbjct: 35 LKEGMTVLDVGTGAG---FYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NV 90
Query: 334 EFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKS--- 390
E ++ K P+N+ D I+ T + + + + KP + I D+ K
Sbjct: 91 EVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERD 150
Query: 391 FGTPSVE-FSEYIKQRGYDLHDVKSYGQMLKDAGF 424
G P E +SE+ G +L+DAG
Sbjct: 151 KGPPPEEVYSEW------------EVGLILEDAGI 173
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 54 EGKTVLEFGAGIGRFTGELAK---KAGHVIALDFIDSVIKKN-EEVNG-HFENVKFMCAD 108
EG TVL+ G G G + L+K + G V A+D + ++ E+VN +NV+ + ++
Sbjct: 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSE 96
Query: 109 VTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS 168
+ +++VD +F + LS E K E + + K Y+ + +
Sbjct: 97 ENK--IPLPDNTVDFIFMAFTFHELS--EPLKFLEELKRVAKPFAYL----AIIDWKKEE 148
Query: 169 KRKHNPTHYREPRFYSKVFKECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQ 222
+ K P YS+ ++DA + VG C G Y K + +
Sbjct: 149 RDKGPPPE----EVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIVKQEEE 198
>pdb|3OFJ|A Chain A, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9
pdb|3OFK|A Chain A, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
pdb|3OFK|B Chain B, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
pdb|3OFK|C Chain C, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
pdb|3OFK|D Chain D, Crystal Structure Of N-Methyltransferase Nods From
Bradyrhizobium Japonicum Wm9 In Complex With
S-Adenosyl-L-Homocysteine (Sah)
Length = 216
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 59 LEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSE 118
LE G G FT +LA + +D + I + + + ++ + D+ L FS
Sbjct: 56 LEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDI----LQFST 111
Query: 119 DSV-DMMFSNWLLMYLSDKEVEKLA-ERMVKWLKVGGYIFF 157
+ D++ +L YL D + A + MVK L GG++ F
Sbjct: 112 AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
>pdb|3E8S|A Chain A, Crystal Structure Of Putative Sam Dependent
Methyltransferase In Complex With Sah (Np_744700.1) From
Pseudomonas Putida Kt2440 At 2.10 A Resolution
Length = 227
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 264 VSTGGIETTKE------FVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSIN 317
V G IE+ ++ +A L +P ++VLD+GCG G +AD+ + VG+D
Sbjct: 28 VRHGAIESRRQVTDQAILLAILGRQP-ERVLDLGCGEGWLLRALADR-GIEAVGVDGDRT 85
Query: 318 MISFALERAIGLKCSVEFEVADCTKKTYP-ENSFDVIYSRDTILHIQDKPALFKSFFKWL 376
++ A RA G A + P +D+I + +LH QD L + L
Sbjct: 86 LVDAA--RAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLH-QDIIELLSAXRTLL 142
Query: 377 KPGGTVLI 384
PGG ++I
Sbjct: 143 VPGGALVI 150
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 288 LDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP- 346
+D+G G G +A + D + +D S + AL+ + ++ P
Sbjct: 48 IDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQGDVHNIPI 107
Query: 347 -ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
+N D+I SR ++ +D F+ ++ LK GG I
Sbjct: 108 EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYI 146
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 279 LDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVA 338
L+ +PG+ +LD+GCG G +A V+G D + I E+A + F+VA
Sbjct: 53 LNPQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATXI----EKARQNYPHLHFDVA 107
Query: 339 DCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGG 380
D + + D ++S + +++ A S + LK GG
Sbjct: 108 DA-RNFRVDKPLDAVFSNAXLHWVKEPEAAIASIHQALKSGG 148
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Query: 267 GGIETTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISF--AL 323
G E T + ++ +D L + D+GCG GG +A V G+D I
Sbjct: 29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTXVLAGHVTGQVTGLDFLSGFIDIFNRN 88
Query: 324 ERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVL 383
R GL+ V V + D+I+S I +I + L + K+LK GG +
Sbjct: 89 ARQSGLQNRVTGIVGSXDDLPFRNEELDLIWSEGAIYNIGFERGL-NEWRKYLKKGGYLA 147
Query: 384 ISDYCKSF 391
+S+ C F
Sbjct: 148 VSE-CSWF 154
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 260 GVGFVSTGGIETTKEFVAKL--DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSIN 317
G+ F TG ETT+ + L L+PG KVLD+G G G A+K +G+D+
Sbjct: 96 GMAF-GTGHAETTRLALKALARHLRPGDKVLDLGTG-SGVLAIAAEKLGGKALGVDIDPM 153
Query: 318 MISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLK 377
++ A A F + + P FD++ + L+ + AL + + L
Sbjct: 154 VLPQAEANAKRNGVRPRF-LEGSLEAALPFGPFDLLVAN---LYAELHAALAPRYREALV 209
Query: 378 PGGTVLISDYCK 389
PGG L++ K
Sbjct: 210 PGGRALLTGILK 221
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDV--HVVGIDLS 315
+KPG+K+L++GCG G +AD+ HV GID++
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIA 77
>pdb|4GEK|A Chain A, Crystal Structure Of Wild-Type Cmoa From E.Coli
pdb|4GEK|G Chain G, Crystal Structure Of Wild-Type Cmoa From E.Coli
Length = 261
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVH-----VVGIDLSINMISFALERAIGLKCSVEF 335
++PG +V D+GC +G + + ++H ++ ID S MI K
Sbjct: 68 VQPGTQVYDLGCSLGAATLSV--RRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPV 125
Query: 336 EV--ADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386
+V D S V+ L ++ AL ++ L PGG +++S+
Sbjct: 126 DVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 178
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 285 QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG-LKCSVEFEVADCTKK 343
+ VLD+GCG G Y A+ V+GIDLS M++ A + + C + + D +
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIE 105
Query: 344 TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385
++++V+ S + +I + K + LK G+ + S
Sbjct: 106 P---DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS 144
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 260 GVGFVSTGGIETTKEFVAKL--DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSIN 317
G+ F TG ETT+ + L L+PG KVLD+G G G A+K +G+D+
Sbjct: 96 GMAF-GTGHHETTRLALKALARHLRPGDKVLDLGTG-SGVLAIAAEKLGGKALGVDIDPM 153
Query: 318 MISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLK 377
++ A A F + + P FD++ + L+ + AL + + L
Sbjct: 154 VLPQAEANAKRNGVRPRF-LEGSLEAALPFGPFDLLVAN---LYAELHAALAPRYREALV 209
Query: 378 PGGTVLISDYCK 389
PGG L++ K
Sbjct: 210 PGGRALLTGILK 221
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 55 GKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEV---NGHFENVKFMCADVTS 111
GKTVL+ GAG G + A+ + ++ ++ EV NG + V + V +
Sbjct: 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVET 143
Query: 112 PDLTFSEDSVDMMFSNWL-LMYLSDKEVEKLAERMVKWLKVGGYIF 156
+L + VD + S W+ L + + + KWLK GG +
Sbjct: 144 VELP---EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADC 340
L PG+ +L+VG G G +++ VG++ S ++ RA + A
Sbjct: 34 LPPGESLLEVGAGTG---YWLRRLPYPQKVGVEPSEAXLAVGRRRA----PEATWVRAWG 86
Query: 341 TKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385
+P SFDV+ T+ ++D + + L+PGG +++
Sbjct: 87 EALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVG 131
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADC 340
+K +VLDVGCG G G + ++ + VG+D+S I ER G S F D
Sbjct: 51 VKKEAEVLDVGCGDGYGTYKLS-RTGYKAVGVDISEVXIQKGKERGEGPDLS--FIKGDL 107
Query: 341 TKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS-----------DYCK 389
+ + F+ I + +++ ++ + LK G I+ Y +
Sbjct: 108 SSLPFENEQFEAIXAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPR 167
Query: 390 SFGTPSV-------EFSEYIKQRGYDLHD 411
+G V EF + +K++G+ + D
Sbjct: 168 LYGKDVVCNTXXPWEFEQLVKEQGFKVVD 196
>pdb|3E23|A Chain A, Crystal Structure Of The Rpa2492 Protein In Complex With
Sam From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr299
Length = 211
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 280 DLKPGQKVLDVGCGIG-GGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVA 338
+L G K+L++GCG G + +A FDV D S + + A R + F
Sbjct: 40 ELPAGAKILELGCGAGYQAEAXLAAGFDVDAT--DGSPELAAEASRRLGRPVRTXLFHQL 97
Query: 339 DCTKKTYPENSFDVIYSRDTILHI-QDKPA-LFKSFFKWLKPGGTVLIS 385
D +++D +++ +LH+ +D+ A + K ++ LKPGG S
Sbjct: 98 DAI------DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYAS 140
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 21/116 (18%)
Query: 279 LDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGID---LSINMISFALERA------IGL 329
LDLKPG KVL++G G G ++ A +VG D +SI I E+A +G
Sbjct: 73 LDLKPGMKVLEIGTGCG---YHAA--VTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY 127
Query: 330 KCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385
+V V D T P +D IY+ P + + + LK GG +L+
Sbjct: 128 D-NVIVIVGDGTLGYEPLAPYDRIYTTAA------GPKIPEPLIRQLKDGGKLLMP 176
>pdb|2P35|A Chain A, Crystal Structure Of Trans-Aconitate Methyltransferase
From Agrobacterium Tumefaciens
pdb|2P35|B Chain B, Crystal Structure Of Trans-Aconitate Methyltransferase
From Agrobacterium Tumefaciens
Length = 259
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVV-GIDLSINMISFALERAI 327
++ +A++ L+ D+GCG G + D++ V+V+ GID + LE+A
Sbjct: 19 TRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDX----LEKAA 74
Query: 328 GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
+ F AD P D++Y+ + D A+ L+ GG + +
Sbjct: 75 DRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVPDHLAVLSQLXDQLESGGVLAV 130
>pdb|3OCJ|A Chain A, The Crystal Structure Of A Possilbe Exported Protein From
Bordetella Parapertussis
Length = 305
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 37/194 (19%)
Query: 281 LKPGQKVLDVGCGIGGGDFYM--ADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFE 336
L+PG V V CG + + V +VGID + A A G L +
Sbjct: 116 LRPGCVVASVPCGWXSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLH 175
Query: 337 VADCTKKTYPENSFDVIYSRDTILHIQDKPA---LFKSFFKWLKPGGTVLISDYCKSFGT 393
D K E +D++ S ++ D L++ F++ LKPGG ++ SF T
Sbjct: 176 RQDAWKLDTREG-YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT-----SFLT 229
Query: 394 PSVEFSE--YIKQRGYDLHD------------------VKSYGQ---MLKDAGFVDI-IA 429
P S + D HD ++++ Q L++AGF D+
Sbjct: 230 PPPALSPDSPWDXQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFE 289
Query: 430 EDRTEQFVQVLQRE 443
+DR F V+ R+
Sbjct: 290 DDRARLFPTVIARK 303
>pdb|3OU2|A Chain A, Dhpi-Sah Complex Structure
pdb|3OU6|A Chain A, Dhpi-Sam Complex
pdb|3OU6|B Chain B, Dhpi-Sam Complex
pdb|3OU6|C Chain C, Dhpi-Sam Complex
pdb|3OU6|D Chain D, Dhpi-Sam Complex
pdb|3OU7|A Chain A, Dhpi-Sam-Hep Complex
pdb|3OU7|B Chain B, Dhpi-Sam-Hep Complex
pdb|3OU7|C Chain C, Dhpi-Sam-Hep Complex
pdb|3OU7|D Chain D, Dhpi-Sam-Hep Complex
Length = 218
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 58 VLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH-FENVKFMCADV--TSPDL 114
VLE +G G +T L+ A V ALD +I E H +NV+F D+ +PD
Sbjct: 50 VLELASGTGYWTRHLSGLADRVTALDGSAEMIA---EAGRHGLDNVEFRQQDLFDWTPDR 106
Query: 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQ 164
+ D+V F++W L ++ D E E + + GG + F + H+
Sbjct: 107 QW--DAV--FFAHW-LAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHE 151
>pdb|2OY0|A Chain A, Crystal Structure Of The West Nile Virus Methyltransferase
pdb|2OY0|B Chain B, Crystal Structure Of The West Nile Virus Methyltransferase
Length = 262
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 262 GFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVV 310
G + G + V + L+P KV+D+GCG GG +YMA + V V
Sbjct: 47 GHPVSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEV 95
>pdb|3LKZ|A Chain A, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
pdb|3LKZ|B Chain B, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
Length = 321
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 262 GFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVV 310
G + G + V + L+P KV+D+GCG GG +YMA + V V
Sbjct: 73 GHPVSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEV 121
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVT 110
++G+ VLE G GIG +T +A+ V++++ + ++ ++ N+K + D T
Sbjct: 69 HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKXYNYASKLLSYYNNIKLILGDGT 126
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEV 337
+LDL GQKVL++G GIG +A+ D VV ++++ ++A + + +++ +
Sbjct: 65 ELDLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKXYNYA-SKLLSYYNNIKLIL 122
Query: 338 ADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385
D T E +D + T P L ++ LK GG ++
Sbjct: 123 GDGTLGYEEEKPYDRVVVWAT------APTLLCKPYEQLKEGGIXILP 164
>pdb|3LCC|A Chain A, Structure Of A Sam-Dependent Halide Methyltransferase From
Arabidopsis Thaliana
Length = 235
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 16/153 (10%)
Query: 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFE--VADC 340
P + L GCG GG D + VVG+D+S + ++ A E G E+ V +
Sbjct: 66 PLGRALVPGCG-GGHDVVAMASPERFVVGLDISESALAKANE-TYGSSPKAEYFSFVKED 123
Query: 341 TKKTYPENSFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF 398
P FD+I+ I+ +PA KS ++ LKP G ++ Y
Sbjct: 124 VFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY---------PI 174
Query: 399 SEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431
++++ Y + DV ++ ++L GF + E+
Sbjct: 175 TDHVGGPPYKV-DVSTFEEVLVPIGFKAVSVEE 206
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 58 VLEFGAGIGRFTGELAKKAGHVIALDFI--DSVIKKNEEVNGHFENVK-FMCADVTSPDL 114
L+ GAGIGR T L + + I D +++ + + V+ + C + D
Sbjct: 83 ALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ--DF 140
Query: 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160
T DS D+++ W++ +L+D+ + + R L+ G I +++
Sbjct: 141 TPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN 186
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDV------HVVGIDLSINMISFALE 324
LKPG + +DVG G G MA K +V +V+G++ ++++F+LE
Sbjct: 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE 127
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVAD 339
+L+P ++L +GCG + + +V +D S +++ A++ + +E D
Sbjct: 39 ELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYS-SVVVAAMQACYAHVPQLRWETMD 97
Query: 340 CTKKTYPENSFDVIYSRDTI 359
K +P SFDV+ + T+
Sbjct: 98 VRKLDFPSASFDVVLEKGTL 117
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 276 VAKLDLKPGQKVLDVGCGIGG-GDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS 332
VA L ++V+D+GCG G + D F + G+D+S + A ER L+
Sbjct: 22 VAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLP 79
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 276 VAKLDLKPGQKVLDVGCGIGG-GDFYMADKFDVHVVGIDLSINMISFALERAIGLKC 331
VA L ++V+D+GCG G + D F + G+D+S + A ER L+
Sbjct: 12 VAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRL 68
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 58 VLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKK---NEEVNGHFENVKF 104
VL+ G+G FT LA +A V+ ++ + ++++K N +NG +NV F
Sbjct: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG-LQNVTF 338
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALE 324
DL + VLDVGCG G + A HV+G+D+S ++I A E
Sbjct: 35 DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKE 78
>pdb|3PX2|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123n Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX2|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123n Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 262
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 286 KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER 325
+LDV CG G ++AD F V G++LS +M++ A R
Sbjct: 53 SLLDVACGTGMHLRHLADSFGT-VEGLELSADMLAIARRR 91
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFE 336
+LD K VLD+GCG G AD ++ G+D+S I A +R V F
Sbjct: 81 RLDDK-ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----QVTFC 135
Query: 337 VADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385
VA + + + S D I+ I P + + +KPGG V+ +
Sbjct: 136 VASSHRLPFSDTSXDA------IIRIY-APCKAEELARVVKPGGWVITA 177
>pdb|3PFG|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sam And
Dtdp-Phenol
pdb|3PFH|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
pdb|3PFH|D Chain D, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
Length = 263
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 286 KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER 325
+LDV CG G ++AD F V G++LS +M++ A R
Sbjct: 53 SLLDVACGTGMHLRHLADSFGT-VEGLELSADMLAIARRR 91
>pdb|3PX3|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX3|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 263
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 286 KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER 325
+LDV CG G ++AD F V G++LS +M++ A R
Sbjct: 53 SLLDVACGTGMHLRHLADSFGT-VEGLELSADMLAIARRR 91
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMA 302
V LDL PG +VL+ G G GG ++A
Sbjct: 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLA 115
>pdb|2I6G|A Chain A, Crystal Structure Of A Putative Methyltransferase (Tehb,
Stm1608) From Salmonella Typhimurium Lt2 At 1.90 A
Resolution
pdb|2I6G|B Chain B, Crystal Structure Of A Putative Methyltransferase (Tehb,
Stm1608) From Salmonella Typhimurium Lt2 At 1.90 A
Resolution
Length = 199
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 21/148 (14%)
Query: 283 PGQKVLDVGCGIGGGDFYM-ADKFDVHVVGIDLSINMISFA-LER---AIGLKCSVEFEV 337
PG + LD+GCG G Y+ A+ +DV N S A LER A GL +++ ++
Sbjct: 32 PG-RTLDLGCGNGRNSLYLAANGYDVTA----WDXNPASXANLERIXAAEGLD-NLQTDL 85
Query: 338 ADCTKKTYPENSFDVIYSR--DTILHIQDKPALFKSFFKWLKPGGTVLI------SDYCK 389
D T+ + +D I S L Q P L + + PGG LI D+
Sbjct: 86 VDLNTLTF-DGEYDFILSTVVXXFLEAQTIPGLIANXQRCTXPGGYNLIVAAXDTPDFPC 144
Query: 390 SFGTPSVEFSEYIKQRGYDLHDVKSYGQ 417
+ G P F E +R Y+ D Y +
Sbjct: 145 TVGFP-FAFXEGELRRYYEGWDXLXYNE 171
>pdb|4E2Z|A Chain A, X-Ray Structure Of The H225n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC 331
++F+A P ++++GC G + V +G + S + + A E+ I ++
Sbjct: 96 ARDFLATELTGPDPFIVEIGCN-DGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRT 154
Query: 332 SV-EFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386
E AD ++T E +VIY+ +T+ HI ++ + L P G + D
Sbjct: 155 DFFEKATADDVRRT--EGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFED 208
>pdb|4E2Y|A Chain A, X-Ray Structure Of The E224q Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC 331
++F+A P ++++GC G + V +G + S + + A E+ I ++
Sbjct: 96 ARDFLATELTGPDPFIVEIGCN-DGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRT 154
Query: 332 SV-EFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386
E AD ++T E +VIY+ +T+ HI ++ + L P G + D
Sbjct: 155 DFFEKATADDVRRT--EGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFED 208
>pdb|3NDI|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosylmethionine And Dtmp
pdb|3NDJ|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosyl-L-Homocysteine And Sugar Product
pdb|4E32|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Dtdp-Sugar
Substrate
pdb|4E33|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Reduced
Dtdp-Sugar Substrate
Length = 416
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC 331
++F+A P ++++GC G + V +G + S + + A E+ I ++
Sbjct: 96 ARDFLATELTGPDPFIVEIGCN-DGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRT 154
Query: 332 SV-EFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386
E AD ++T E +VIY+ +T+ HI ++ + L P G + D
Sbjct: 155 DFFEKATADDVRRT--EGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFED 208
>pdb|4E31|A Chain A, X-Ray Structure Of The Y76f Mutant Of Tcab9, A
C-3'-Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC 331
++F+A P ++++GC G + V +G + S + + A E+ I ++
Sbjct: 96 ARDFLATELTGPDPFIVEIGCN-DGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRT 154
Query: 332 SV-EFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386
E AD ++T E +VIY+ +T+ HI ++ + L P G + D
Sbjct: 155 DFFEKATADDVRRT--EGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFED 208
>pdb|4E2X|A Chain A, X-Ray Structure Of The Y222f Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC 331
++F+A P ++++GC G + V +G + S + + A E+ I ++
Sbjct: 96 ARDFLATELTGPDPFIVEIGCN-DGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRT 154
Query: 332 SV-EFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386
E AD ++T E +VIY+ +T+ HI ++ + L P G + D
Sbjct: 155 DFFEKATADDVRRT--EGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFED 208
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 58 VLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKK---NEEVNGHFENVKF 104
VL+ G G FT LA +A V+ ++ + ++++K N +NG +NV F
Sbjct: 290 VLDLFCGXGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG-LQNVTF 338
>pdb|3ELD|A Chain A, Wesselsbron Methyltransferase In Complex With Sinefungin
pdb|3ELU|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adomet
pdb|3ELW|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adomet
And Gpppg
pdb|3ELY|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adohcy
pdb|3EMB|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adomet
And 7megpppg
pdb|3EMD|A Chain A, Wesselsbron Virus Methyltransferase In Complex With
Sinefungin And 7megpppa
Length = 300
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 226 IWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTG----GIETTKEFVAKLD- 280
+W+ R N G Q+F +YK++ I +R ++ G GI ++ AK+
Sbjct: 19 VWK--RQLNMLGKQEF---ERYKVSDITEVDRTAARRYLKEGRTDVGISVSRG-AAKIRW 72
Query: 281 ------LKPGQKVLDVGCGIGGGDFYMADKFDVHVV-GIDLSI 316
L+ +VLD+GCG GG +Y A + +V V G L I
Sbjct: 73 LHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI 115
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 263 FVSTGGIETTKE-----FVAKLDLKPGQKVLDVGCGIGGGDFYMADK 304
F+ G+ TKE + KL+L V+DVGCG GG +A +
Sbjct: 10 FIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGXTVEIAKR 56
>pdb|4HYR|A Chain A, Structure Of Putative Glucarate Dehydratase From
Acidaminococcus Sp. D21 With Unusual Static Disorder
pdb|4HYR|B Chain B, Structure Of Putative Glucarate Dehydratase From
Acidaminococcus Sp. D21 With Unusual Static Disorder
Length = 452
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 196 SGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQ 233
S N F++SL +GA V + N WIWQ+ R +
Sbjct: 338 SNNHFDISLAXCVHVGAAVPGEYNALDTHWIWQEGRER 375
>pdb|1R6A|A Chain A, Structure Of The Dengue Virus 2'o Methyltransferase In
Complex With S-Adenosyl Homocysteine And Ribavirin 5'
Triphosphate
Length = 295
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 247 YKLNGILRYERVFGVGFVSTG---------GIETTKEFVAKLDLKPGQKVLDVGCGIGGG 297
YK +GI +R + G G + FV + + P KV+D+GCG GG
Sbjct: 27 YKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGW 86
Query: 298 DFYMADKFDVHVV 310
+Y +V V
Sbjct: 87 SYYCGGLKNVREV 99
>pdb|1L9K|A Chain A, Dengue Methyltransferase
pdb|2P1D|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With Gtp And S-Adenosyl-L-Homocysteine
pdb|2P3L|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With Gpppa And S-Adenosyl-L-Homocysteine
pdb|2P3O|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With 7megpppa And S-adenosyl-l-homocysteine
pdb|2P3Q|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With Gpppg And S-Adenosyl-L-Homocysteine
pdb|2P40|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With 7megpppg
pdb|2P41|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With 7megpppg2'ome And S-Adenosyl-L-Homocysteine
Length = 305
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 247 YKLNGILRYERVFGVGFVSTG---------GIETTKEFVAKLDLKPGQKVLDVGCGIGGG 297
YK +GI +R + G G + FV + + P KV+D+GCG GG
Sbjct: 37 YKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGW 96
Query: 298 DFYMADKFDVHVV 310
+Y +V V
Sbjct: 97 SYYCGGLKNVREV 109
>pdb|2PX2|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Monoclinic Form 1)
pdb|2PX2|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Monoclinic Form 1)
pdb|2PX4|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Monoclinic Form 2)
pdb|2PX5|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Orthorhombic Crystal Form)
pdb|2PX5|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-O Methyltransferase Domain In Complex With Sah
(Orthorhombic Crystal Form)
pdb|2PXA|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-o Methyltransferase Domain In Complex With Sah
And Gtpg
pdb|2PXA|B Chain B, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-o Methyltransferase Domain In Complex With Sah
And Gtpg
pdb|2PXC|A Chain A, Crystal Structure Of The Murray Valley Encephalitis Virus
Ns5 2'-o Methyltransferase Domain In Complex With Sam
And Gtpa
Length = 269
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 268 GIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVV 310
G + V + ++P KV+D+GCG GG +Y A +V V
Sbjct: 58 GTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEV 100
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 57 TVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT 115
VLE G G G T ELAK A V ++ S+ ++ + N++ + D DL
Sbjct: 24 VVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLN 82
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 57 TVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT 115
VLE G G G T ELAK A V ++ S+ ++ + N++ + D DL
Sbjct: 26 VVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLN 84
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 57 TVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT 115
VLE G G G T ELAK A V ++ S+ ++ + N++ + D DL
Sbjct: 53 VVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLN 111
>pdb|3EVG|A Chain A, Crystal Structure Of Dengue-2 Virus Methyltransferase
Complexed With S-Adenosyl-L-Homocysteine
Length = 275
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 247 YKLNGILRYERVFGVGFVSTG---------GIETTKEFVAKLDLKPGQKVLDVGCGIGGG 297
YK +GI +R + G G + FV + + P KV+D+GCG GG
Sbjct: 28 YKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNMVTPEGKVVDLGCGRGGW 87
Query: 298 DFYMADKFDVHVV 310
+Y +V V
Sbjct: 88 SYYCGGLKNVREV 100
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 27/118 (22%)
Query: 53 YEGKTVLEFGAGIG-------------RFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF 99
+EGKTVL+ G G G + E K A H AL +++ E + G
Sbjct: 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSV 121
Query: 100 ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEV-EKLAERMVKWLKVGGYIF 156
E D++ P + VD++ S W+ +L + + + + +WLK G ++
Sbjct: 122 E-------DISLP------EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMY 166
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKC 331
K + +L K G VLD+GCG GGD ++ + G+D++ I+ A RA +K
Sbjct: 54 KACLIRLYTKRGDSVLDLGCG-KGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK- 111
Query: 332 SVEFEVADCTKKTYPEN-----SFDVIYSRDTILHIQDKPALF----KSFFKWLKPGGTV 382
F+V + +Y + FDVI S+ + + ++ + L+PGG
Sbjct: 112 -RRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYF 170
Query: 383 LIS 385
+++
Sbjct: 171 IMT 173
>pdb|3GCZ|A Chain A, Yokose Virus Methyltransferase In Complex With Adomet
Length = 282
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 227 WQKVRSQNDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTG---GIETTKEFVAKLD--- 280
W+K N G QF QYK + IL +R + G GI ++ AKL
Sbjct: 30 WKK--QLNKLGKTQF---EQYKRSCILEVDRTHARDSLENGIQNGIAVSRGS-AKLRWME 83
Query: 281 ----LKPGQKVLDVGCGIGGGDFYMADKFDVHVV 310
+KP V+D+GCG GG +Y A +V V
Sbjct: 84 ERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKV 117
>pdb|3CGG|A Chain A, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
pdb|3CGG|B Chain B, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
Length = 195
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK 343
G K+LD GCG G Y++ K V+G DL +I +A + + V D +
Sbjct: 47 GAKILDAGCGQGRIGGYLS-KQGHDVLGTDLDPILIDYAKQDF----PEARWVVGDLSVD 101
Query: 344 TYPENSFDVIYSRDTI 359
E FD+I S +
Sbjct: 102 QISETDFDLIVSAGNV 117
>pdb|3M70|A Chain A, Crystal Structure Of Tehb From Haemophilus Influenzae
Length = 286
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 286 KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTY 345
KVLD+GCG G Y++ V D + N I+F E ++ + D
Sbjct: 123 KVLDLGCGQGRNSLYLS-LLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI 181
Query: 346 PENSFDVIYSRDT--ILHIQDKPALFKSFFKWLKPGGTVLI 384
EN +D I S L+ + P++ K+ + GG LI
Sbjct: 182 QEN-YDFIVSTVVFXFLNRERVPSIIKNXKEHTNVGGYNLI 221
>pdb|2XBM|A Chain A, Crystal Structure Of The Dengue Virus Methyltransferase
Bound To A 5'-Capped Octameric Rna
pdb|2XBM|B Chain B, Crystal Structure Of The Dengue Virus Methyltransferase
Bound To A 5'-Capped Octameric Rna
pdb|2XBM|C Chain C, Crystal Structure Of The Dengue Virus Methyltransferase
Bound To A 5'-Capped Octameric Rna
pdb|2XBM|D Chain D, Crystal Structure Of The Dengue Virus Methyltransferase
Bound To A 5'-Capped Octameric Rna
Length = 263
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMA 302
FV + + P +V+D+GCG GG +Y A
Sbjct: 65 FVERNMVIPEGRVIDLGCGRGGWSYYCA 92
>pdb|3P8Z|A Chain A, Dengue Methyltransferase Bound To A Sam-Based Inhibitor
pdb|3P8Z|C Chain C, Dengue Methyltransferase Bound To A Sam-Based Inhibitor
pdb|3P97|A Chain A, Dengue 3 Ns5 Methyltransferase Bound To The Substrate
S-Adenosyl Methionine
pdb|3P97|C Chain C, Dengue 3 Ns5 Methyltransferase Bound To The Substrate
S-Adenosyl Methionine
Length = 267
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMA 302
FV + + P +V+D+GCG GG +Y A
Sbjct: 70 FVERNMVIPEGRVIDLGCGRGGWSYYCA 97
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 57 TVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKK-NEEVNGH--FENVKFMCADVTSPD 113
VLE G G G T +L +KA V+A + ++ + ++ V G ++ + DV D
Sbjct: 31 VVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 90
Query: 114 LTFSEDSV 121
L F + V
Sbjct: 91 LPFFDTCV 98
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 56 KTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCA---DV 109
K VLEFG G G L++ AG V + ++ K ++ F +NVKF D
Sbjct: 93 KRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA 152
Query: 110 TSPDLTFSEDSVDM 123
P+ F VD+
Sbjct: 153 EVPEGIFHAAFVDV 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,941,885
Number of Sequences: 62578
Number of extensions: 649622
Number of successful extensions: 2079
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1975
Number of HSP's gapped (non-prelim): 143
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)