Query 043471
Match_columns 485
No_of_seqs 410 out of 5482
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:25:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02336 phosphoethanolamine N 100.0 3.7E-56 8E-61 453.6 43.2 452 20-471 3-454 (475)
2 PTZ00098 phosphoethanolamine N 100.0 6.6E-30 1.4E-34 238.7 25.5 229 239-468 8-239 (263)
3 COG2230 Cfa Cyclopropane fatty 100.0 1.1E-29 2.4E-34 231.1 21.7 229 227-471 17-263 (283)
4 PF02353 CMAS: Mycolic acid cy 100.0 2.1E-29 4.5E-34 234.3 20.3 225 236-471 19-257 (273)
5 PRK11705 cyclopropane fatty ac 99.9 1.2E-24 2.7E-29 212.8 20.1 217 236-471 125-352 (383)
6 COG2226 UbiE Methylase involve 99.9 3.9E-24 8.4E-29 191.9 18.5 161 271-431 39-224 (238)
7 PF01209 Ubie_methyltran: ubiE 99.9 8.1E-24 1.8E-28 192.6 10.8 160 274-433 38-222 (233)
8 COG2226 UbiE Methylase involve 99.9 4.5E-23 9.8E-28 185.1 13.8 156 1-163 1-160 (238)
9 PLN02244 tocopherol O-methyltr 99.9 5E-22 1.1E-26 192.5 22.0 171 270-440 100-287 (340)
10 PLN02233 ubiquinone biosynthes 99.9 1.3E-21 2.7E-26 182.7 19.3 159 275-433 65-250 (261)
11 PF01209 Ubie_methyltran: ubiE 99.9 2.7E-22 5.9E-27 182.7 7.7 143 14-163 10-157 (233)
12 smart00828 PKS_MT Methyltransf 99.9 1.3E-20 2.7E-25 173.2 17.3 174 285-466 1-178 (224)
13 PRK14103 trans-aconitate 2-met 99.9 6.1E-21 1.3E-25 178.5 15.2 153 271-430 17-183 (255)
14 PRK01544 bifunctional N5-gluta 99.9 7.3E-20 1.6E-24 185.6 23.6 277 54-386 138-462 (506)
15 TIGR02752 MenG_heptapren 2-hep 99.8 1E-19 2.2E-24 168.1 18.5 162 272-433 34-220 (231)
16 PLN02396 hexaprenyldihydroxybe 99.8 4.2E-20 9.1E-25 175.6 15.3 150 282-432 130-290 (322)
17 PTZ00098 phosphoethanolamine N 99.8 1.2E-19 2.6E-24 169.6 17.7 161 33-195 31-198 (263)
18 KOG1540 Ubiquinone biosynthesi 99.8 1.6E-19 3.4E-24 158.1 16.4 156 273-428 90-278 (296)
19 PLN02233 ubiquinone biosynthes 99.8 3.2E-20 7E-25 173.2 12.8 177 12-195 34-244 (261)
20 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.7E-20 5.9E-25 163.5 10.6 150 282-432 58-216 (243)
21 PLN02490 MPBQ/MSBQ methyltrans 99.8 6.9E-19 1.5E-23 167.6 18.5 159 273-437 102-262 (340)
22 PRK15068 tRNA mo(5)U34 methylt 99.8 5.8E-19 1.2E-23 169.2 18.1 161 273-434 112-277 (322)
23 PLN02244 tocopherol O-methyltr 99.8 1.5E-19 3.3E-24 175.3 14.0 149 43-195 102-274 (340)
24 PRK11036 putative S-adenosyl-L 99.8 3.6E-19 7.8E-24 166.5 15.8 157 272-430 34-206 (255)
25 TIGR00452 methyltransferase, p 99.8 1.5E-18 3.3E-23 164.1 18.9 161 273-434 111-276 (314)
26 PF13489 Methyltransf_23: Meth 99.8 6.1E-20 1.3E-24 159.7 7.2 137 281-428 20-160 (161)
27 PRK01683 trans-aconitate 2-met 99.8 1.9E-18 4.1E-23 162.3 17.6 152 271-427 19-183 (258)
28 PLN02396 hexaprenyldihydroxybe 99.8 4E-19 8.7E-24 168.9 13.0 139 53-195 130-285 (322)
29 PF08241 Methyltransf_11: Meth 99.8 5.4E-19 1.2E-23 139.0 11.1 94 59-157 1-95 (95)
30 PRK11873 arsM arsenite S-adeno 99.8 3.9E-18 8.5E-23 161.3 18.3 154 279-432 73-231 (272)
31 PRK11207 tellurite resistance 99.8 1.8E-18 3.9E-23 154.7 15.1 139 44-188 20-161 (197)
32 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.6E-19 3.5E-24 158.7 8.0 106 53-162 58-164 (243)
33 PRK08317 hypothetical protein; 99.8 5E-18 1.1E-22 158.0 18.7 161 272-432 8-177 (241)
34 PRK10258 biotin biosynthesis p 99.8 2.6E-18 5.7E-23 160.6 16.6 158 270-436 29-191 (251)
35 PF08241 Methyltransf_11: Meth 99.8 9.6E-19 2.1E-23 137.6 10.4 95 288-384 1-95 (95)
36 PF05891 Methyltransf_PK: AdoM 99.8 1.3E-18 2.8E-23 151.7 11.6 185 8-196 4-198 (218)
37 COG4106 Tam Trans-aconitate me 99.8 3.4E-18 7.4E-23 146.0 13.9 189 270-463 17-231 (257)
38 PRK11207 tellurite resistance 99.8 1.1E-17 2.3E-22 149.8 16.7 147 274-431 21-170 (197)
39 PRK11036 putative S-adenosyl-L 99.8 3.1E-18 6.8E-23 160.1 13.5 148 44-195 35-203 (255)
40 KOG1270 Methyltransferases [Co 99.8 9E-19 1.9E-23 154.7 9.1 144 284-431 90-249 (282)
41 COG2230 Cfa Cyclopropane fatty 99.8 3.9E-18 8.4E-23 155.8 12.2 117 42-163 60-180 (283)
42 TIGR00477 tehB tellurite resis 99.8 8.4E-18 1.8E-22 150.2 13.7 141 44-189 20-161 (195)
43 TIGR03840 TMPT_Se_Te thiopurin 99.8 2.2E-17 4.9E-22 148.4 16.3 144 41-189 21-178 (213)
44 TIGR02752 MenG_heptapren 2-hep 99.8 4.3E-18 9.2E-23 157.2 11.8 145 11-162 5-154 (231)
45 PF03848 TehB: Tellurite resis 99.8 6.7E-18 1.4E-22 146.9 12.2 140 45-189 21-161 (192)
46 PRK15451 tRNA cmo(5)U34 methyl 99.8 2.1E-17 4.5E-22 153.5 16.1 145 281-427 54-226 (247)
47 TIGR00477 tehB tellurite resis 99.8 2.2E-17 4.8E-22 147.5 15.6 150 273-433 20-171 (195)
48 PRK00216 ubiE ubiquinone/menaq 99.8 5.4E-17 1.2E-21 150.9 18.9 163 271-433 39-227 (239)
49 PRK14103 trans-aconitate 2-met 99.8 9.8E-18 2.1E-22 156.9 13.7 140 44-193 19-178 (255)
50 PF12847 Methyltransf_18: Meth 99.8 7.6E-18 1.6E-22 136.9 11.3 103 54-159 1-111 (112)
51 PRK10258 biotin biosynthesis p 99.8 6.2E-18 1.4E-22 158.0 12.0 118 38-162 26-143 (251)
52 TIGR00452 methyltransferase, p 99.7 1.1E-17 2.4E-22 158.3 13.4 147 44-195 111-269 (314)
53 PRK15068 tRNA mo(5)U34 methylt 99.7 1.3E-17 2.9E-22 159.8 13.9 147 44-195 112-270 (322)
54 PF02353 CMAS: Mycolic acid cy 99.7 6.2E-18 1.3E-22 157.6 11.1 117 42-163 50-170 (273)
55 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 1.3E-16 2.8E-21 146.7 18.6 162 272-434 28-213 (223)
56 PF13489 Methyltransf_23: Meth 99.7 9.4E-18 2E-22 145.9 10.4 132 52-195 20-159 (161)
57 KOG1540 Ubiquinone biosynthesi 99.7 1.8E-17 3.8E-22 145.3 11.8 128 30-161 76-216 (296)
58 TIGR00740 methyltransferase, p 99.7 5E-17 1.1E-21 150.6 15.6 145 281-427 51-223 (239)
59 PF05401 NodS: Nodulation prot 99.7 1.3E-17 2.9E-22 142.7 10.4 137 44-189 32-170 (201)
60 PLN02336 phosphoethanolamine N 99.7 3.2E-17 6.8E-22 167.6 15.2 150 42-195 254-410 (475)
61 PRK13255 thiopurine S-methyltr 99.7 1.3E-16 2.9E-21 144.0 16.8 140 45-189 28-181 (218)
62 PRK11783 rlmL 23S rRNA m(2)G24 99.7 5.3E-16 1.1E-20 164.0 24.1 138 271-432 528-681 (702)
63 PF12847 Methyltransf_18: Meth 99.7 1.6E-17 3.5E-22 135.0 9.5 103 283-386 1-111 (112)
64 PLN02490 MPBQ/MSBQ methyltrans 99.7 2.4E-17 5.2E-22 157.1 11.9 153 38-196 96-253 (340)
65 PRK05785 hypothetical protein; 99.7 7.7E-17 1.7E-21 147.1 14.7 90 283-379 51-140 (226)
66 KOG1270 Methyltransferases [Co 99.7 7.4E-18 1.6E-22 148.9 7.6 101 55-162 90-198 (282)
67 PF13847 Methyltransf_31: Meth 99.7 3.4E-17 7.4E-22 140.7 11.4 106 282-388 2-112 (152)
68 TIGR02072 BioC biotin biosynth 99.7 2.1E-16 4.6E-21 146.9 17.1 142 282-430 33-175 (240)
69 PF13847 Methyltransf_31: Meth 99.7 3.8E-17 8.2E-22 140.4 10.7 106 53-161 2-112 (152)
70 TIGR03587 Pse_Me-ase pseudamin 99.7 1.2E-16 2.7E-21 143.0 13.7 101 53-161 42-144 (204)
71 PF13649 Methyltransf_25: Meth 99.7 2E-17 4.4E-22 131.5 7.1 94 58-153 1-101 (101)
72 PRK12335 tellurite resistance 99.7 1.6E-16 3.4E-21 151.0 14.2 137 48-189 114-251 (287)
73 PRK12335 tellurite resistance 99.7 3.3E-16 7.1E-21 148.8 16.1 140 283-433 120-261 (287)
74 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.6E-16 3.6E-21 147.5 12.9 105 53-161 55-166 (247)
75 KOG4300 Predicted methyltransf 99.7 2.9E-16 6.3E-21 133.2 12.6 146 283-430 76-231 (252)
76 TIGR00740 methyltransferase, p 99.7 1.4E-16 3.1E-21 147.6 11.8 106 53-162 52-164 (239)
77 smart00828 PKS_MT Methyltransf 99.7 3.1E-16 6.8E-21 144.0 13.7 135 56-195 1-140 (224)
78 TIGR02021 BchM-ChlM magnesium 99.7 3.2E-16 6.9E-21 143.3 13.6 162 272-439 42-214 (219)
79 PRK05785 hypothetical protein; 99.7 1.5E-16 3.2E-21 145.2 11.3 130 10-152 8-140 (226)
80 TIGR02716 C20_methyl_CrtF C-20 99.7 1.7E-15 3.6E-20 145.7 18.8 155 272-429 138-304 (306)
81 COG4106 Tam Trans-aconitate me 99.7 1.3E-16 2.9E-21 136.4 9.2 109 44-160 20-130 (257)
82 PF08003 Methyltransf_9: Prote 99.7 3.7E-16 8.1E-21 142.6 12.4 152 40-196 101-264 (315)
83 smart00138 MeTrc Methyltransfe 99.7 6.1E-16 1.3E-20 144.4 13.8 173 213-386 18-242 (264)
84 PRK05134 bifunctional 3-demeth 99.7 1.1E-15 2.4E-20 141.3 15.0 157 274-431 39-205 (233)
85 PRK01683 trans-aconitate 2-met 99.7 4.2E-16 9.2E-21 146.4 11.9 110 42-159 19-130 (258)
86 PF08003 Methyltransf_9: Prote 99.7 1.5E-15 3.3E-20 138.6 14.7 160 274-434 106-270 (315)
87 PRK00107 gidB 16S rRNA methylt 99.7 3.9E-15 8.4E-20 130.8 16.7 125 281-431 43-169 (187)
88 KOG2361 Predicted methyltransf 99.7 2.9E-16 6.4E-21 136.9 9.4 181 11-196 33-234 (264)
89 PRK00216 ubiE ubiquinone/menaq 99.7 1.3E-15 2.9E-20 141.5 14.5 146 10-162 10-161 (239)
90 PRK06922 hypothetical protein; 99.7 2.2E-15 4.7E-20 152.0 16.7 110 280-389 415-540 (677)
91 PF05401 NodS: Nodulation prot 99.7 4.1E-15 9E-20 127.4 15.8 141 274-429 33-177 (201)
92 PRK11873 arsM arsenite S-adeno 99.7 4.8E-16 1E-20 147.0 11.1 141 51-195 74-226 (272)
93 KOG1271 Methyltransferases [Ge 99.7 2.2E-16 4.7E-21 131.1 7.3 170 5-192 9-198 (227)
94 PF03848 TehB: Tellurite resis 99.7 1.7E-15 3.7E-20 131.8 13.0 147 274-431 21-169 (192)
95 TIGR03840 TMPT_Se_Te thiopurin 99.7 9.7E-15 2.1E-19 131.4 18.3 152 269-431 20-187 (213)
96 PRK08317 hypothetical protein; 99.6 2.1E-15 4.5E-20 140.3 14.3 152 41-196 6-173 (241)
97 TIGR02021 BchM-ChlM magnesium 99.6 1.4E-15 3.1E-20 139.0 12.4 151 41-196 40-203 (219)
98 PLN02585 magnesium protoporphy 99.6 3.6E-15 7.7E-20 141.5 14.9 156 271-434 129-302 (315)
99 PRK11705 cyclopropane fatty ac 99.6 1.7E-15 3.6E-20 148.6 12.8 115 43-163 156-271 (383)
100 TIGR02081 metW methionine bios 99.6 6.2E-15 1.3E-19 132.0 15.3 142 282-432 12-168 (194)
101 TIGR01983 UbiG ubiquinone bios 99.6 6.8E-15 1.5E-19 135.2 16.0 150 283-433 45-205 (224)
102 TIGR00537 hemK_rel_arch HemK-r 99.6 8.4E-15 1.8E-19 129.4 15.9 134 277-433 13-167 (179)
103 PF13649 Methyltransf_25: Meth 99.6 2.6E-16 5.7E-21 125.1 5.6 94 287-380 1-101 (101)
104 PF08242 Methyltransf_12: Meth 99.6 6.2E-17 1.3E-21 128.3 1.5 95 59-155 1-99 (99)
105 PF08242 Methyltransf_12: Meth 99.6 9E-17 1.9E-21 127.4 2.3 95 288-382 1-99 (99)
106 smart00138 MeTrc Methyltransfe 99.6 2.5E-15 5.5E-20 140.2 11.6 107 52-160 97-243 (264)
107 PRK13255 thiopurine S-methyltr 99.6 4.1E-14 8.9E-19 127.8 18.8 153 269-432 23-191 (218)
108 TIGR02072 BioC biotin biosynth 99.6 2E-15 4.4E-20 140.3 10.5 115 42-162 19-138 (240)
109 PLN02232 ubiquinone biosynthes 99.6 5.4E-15 1.2E-19 127.6 12.3 124 310-433 1-149 (160)
110 PRK05134 bifunctional 3-demeth 99.6 5.9E-15 1.3E-19 136.4 13.5 170 14-195 17-201 (233)
111 PRK06202 hypothetical protein; 99.6 4.5E-15 9.7E-20 136.9 12.5 145 281-430 58-221 (232)
112 PRK07580 Mg-protoporphyrin IX 99.6 1.4E-14 3E-19 133.8 15.8 154 281-443 61-227 (230)
113 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 1.2E-14 2.5E-19 133.6 15.0 118 40-161 25-145 (223)
114 TIGR00138 gidB 16S rRNA methyl 99.6 1.9E-14 4.1E-19 126.4 15.5 128 283-433 42-171 (181)
115 PF07021 MetW: Methionine bios 99.6 7E-15 1.5E-19 125.9 12.2 145 281-434 11-170 (193)
116 PRK13256 thiopurine S-methyltr 99.6 1.7E-14 3.7E-19 129.3 15.2 138 47-189 36-188 (226)
117 PRK04266 fibrillarin; Provisio 99.6 4.9E-14 1.1E-18 127.8 18.4 141 278-433 67-212 (226)
118 PRK06922 hypothetical protein; 99.6 5.5E-15 1.2E-19 149.1 13.0 111 53-163 417-541 (677)
119 PRK06202 hypothetical protein; 99.6 6.7E-15 1.5E-19 135.7 12.6 142 51-198 57-221 (232)
120 PLN02585 magnesium protoporphy 99.6 4.2E-15 9.1E-20 141.0 11.4 146 42-194 129-294 (315)
121 TIGR03587 Pse_Me-ase pseudamin 99.6 1.4E-14 3E-19 129.8 13.1 102 281-389 41-145 (204)
122 PF03141 Methyltransf_29: Puta 99.6 1.6E-15 3.5E-20 146.8 7.4 115 42-163 101-223 (506)
123 PRK08287 cobalt-precorrin-6Y C 99.6 6.4E-14 1.4E-18 124.7 17.0 134 273-431 21-156 (187)
124 PRK00107 gidB 16S rRNA methylt 99.6 6.4E-15 1.4E-19 129.5 9.3 98 54-160 45-146 (187)
125 PRK11088 rrmA 23S rRNA methylt 99.6 3.9E-14 8.4E-19 133.7 15.1 97 281-388 83-183 (272)
126 COG4976 Predicted methyltransf 99.6 2.7E-15 5.8E-20 129.4 5.9 155 270-434 112-268 (287)
127 PRK15001 SAM-dependent 23S rib 99.6 6.3E-13 1.4E-17 128.8 23.1 114 272-386 217-340 (378)
128 PRK07580 Mg-protoporphyrin IX 99.6 3.5E-14 7.5E-19 131.1 13.4 146 45-195 51-210 (230)
129 PRK00121 trmB tRNA (guanine-N( 99.6 2.6E-14 5.6E-19 128.4 11.9 125 283-427 40-177 (202)
130 PRK13944 protein-L-isoaspartat 99.6 4.7E-14 1E-18 127.1 13.6 111 270-386 59-173 (205)
131 TIGR02716 C20_methyl_CrtF C-20 99.6 5.2E-14 1.1E-18 135.4 14.6 147 44-195 139-302 (306)
132 PRK14967 putative methyltransf 99.6 2.6E-13 5.5E-18 124.2 18.4 143 270-433 23-186 (223)
133 TIGR02469 CbiT precorrin-6Y C5 99.6 7E-14 1.5E-18 115.7 13.1 112 272-386 8-122 (124)
134 TIGR00537 hemK_rel_arch HemK-r 99.6 3.3E-14 7.2E-19 125.5 11.8 131 44-193 9-159 (179)
135 KOG4300 Predicted methyltransf 99.5 1.8E-14 4E-19 122.3 8.9 110 50-162 72-185 (252)
136 PF05724 TPMT: Thiopurine S-me 99.5 5.4E-14 1.2E-18 126.6 12.6 145 41-192 24-183 (218)
137 TIGR01983 UbiG ubiquinone bios 99.5 4.4E-14 9.5E-19 129.8 11.8 173 11-196 7-200 (224)
138 PRK08287 cobalt-precorrin-6Y C 99.5 6.8E-14 1.5E-18 124.5 12.5 132 41-196 18-153 (187)
139 PRK13942 protein-L-isoaspartat 99.5 9.7E-14 2.1E-18 125.6 13.6 111 269-385 62-175 (212)
140 TIGR02469 CbiT precorrin-6Y C5 99.5 4.2E-14 9.1E-19 117.0 10.1 113 41-159 6-122 (124)
141 TIGR00138 gidB 16S rRNA methyl 99.5 3.4E-14 7.3E-19 124.8 9.9 97 53-158 41-141 (181)
142 KOG1541 Predicted protein carb 99.5 1.5E-13 3.3E-18 118.0 12.6 114 269-387 34-161 (270)
143 TIGR01177 conserved hypothetic 99.5 1.1E-13 2.5E-18 134.0 13.4 138 270-432 169-316 (329)
144 PRK00377 cbiT cobalt-precorrin 99.5 3.4E-13 7.4E-18 121.0 15.4 130 274-426 31-165 (198)
145 PRK14968 putative methyltransf 99.5 3E-13 6.4E-18 120.8 14.9 134 275-430 15-172 (188)
146 PRK00121 trmB tRNA (guanine-N( 99.5 2.4E-14 5.3E-19 128.5 7.8 115 45-160 32-157 (202)
147 PRK11088 rrmA 23S rRNA methylt 99.5 6.9E-14 1.5E-18 132.0 10.8 95 53-161 84-183 (272)
148 KOG2361 Predicted methyltransf 99.5 5.5E-14 1.2E-18 122.8 9.2 145 286-430 74-236 (264)
149 TIGR02081 metW methionine bios 99.5 3.1E-13 6.8E-18 120.9 14.4 141 44-196 5-164 (194)
150 PLN03075 nicotianamine synthas 99.5 2.3E-13 5E-18 126.3 13.7 112 274-386 114-233 (296)
151 PRK13944 protein-L-isoaspartat 99.5 7.6E-14 1.6E-18 125.7 10.3 108 41-158 59-172 (205)
152 PF05175 MTS: Methyltransferas 99.5 1.3E-13 2.8E-18 120.4 10.9 112 273-385 21-139 (170)
153 PRK14966 unknown domain/N5-glu 99.5 6.5E-13 1.4E-17 128.6 16.5 127 282-429 250-403 (423)
154 TIGR00080 pimt protein-L-isoas 99.5 3.4E-13 7.4E-18 122.7 13.7 110 270-385 64-176 (215)
155 PTZ00146 fibrillarin; Provisio 99.5 1.2E-12 2.5E-17 121.0 17.2 150 270-433 116-273 (293)
156 COG4976 Predicted methyltransf 99.5 2.2E-14 4.8E-19 123.8 5.2 152 40-196 111-262 (287)
157 PF07021 MetW: Methionine bios 99.5 3.5E-13 7.7E-18 115.5 12.5 138 45-194 6-162 (193)
158 PRK00517 prmA ribosomal protei 99.5 5.4E-13 1.2E-17 124.1 14.9 120 281-431 117-238 (250)
159 TIGR03534 RF_mod_PrmC protein- 99.5 8.2E-13 1.8E-17 123.7 16.2 138 270-430 75-240 (251)
160 KOG1541 Predicted protein carb 99.5 1.2E-13 2.5E-18 118.7 9.3 119 38-160 32-161 (270)
161 PRK13942 protein-L-isoaspartat 99.5 2E-13 4.3E-18 123.5 10.3 111 38-158 60-175 (212)
162 PRK04266 fibrillarin; Provisio 99.5 4.6E-13 9.9E-18 121.5 12.6 136 49-196 67-207 (226)
163 TIGR00080 pimt protein-L-isoas 99.5 2.1E-13 4.5E-18 124.1 10.4 108 41-158 64-176 (215)
164 PRK09489 rsmC 16S ribosomal RN 99.5 5.2E-13 1.1E-17 128.7 13.3 114 271-386 184-303 (342)
165 PRK13256 thiopurine S-methyltr 99.5 3.4E-12 7.4E-17 114.6 17.5 152 266-429 26-195 (226)
166 TIGR00406 prmA ribosomal prote 99.5 1E-12 2.3E-17 124.6 15.0 131 274-431 151-283 (288)
167 PLN03075 nicotianamine synthas 99.5 3E-13 6.5E-18 125.5 10.9 111 46-159 115-233 (296)
168 PRK00377 cbiT cobalt-precorrin 99.5 5.8E-13 1.3E-17 119.5 12.3 132 40-192 26-163 (198)
169 PF05175 MTS: Methyltransferas 99.5 2.1E-13 4.6E-18 119.0 8.5 112 44-158 21-139 (170)
170 COG2518 Pcm Protein-L-isoaspar 99.5 1.3E-12 2.8E-17 113.9 13.1 111 270-387 59-170 (209)
171 PRK14121 tRNA (guanine-N(7)-)- 99.4 4.1E-13 8.8E-18 129.3 10.8 117 44-160 112-236 (390)
172 TIGR00091 tRNA (guanine-N(7)-) 99.4 3.4E-13 7.4E-18 120.5 9.6 104 283-386 16-132 (194)
173 PRK15001 SAM-dependent 23S rib 99.4 5.9E-13 1.3E-17 129.0 11.8 113 44-159 218-340 (378)
174 TIGR03533 L3_gln_methyl protei 99.4 4.4E-12 9.5E-17 119.8 17.5 138 270-430 107-273 (284)
175 TIGR03438 probable methyltrans 99.4 7E-13 1.5E-17 126.6 12.1 108 54-161 63-179 (301)
176 COG4123 Predicted O-methyltran 99.4 1.5E-12 3.2E-17 117.3 13.4 131 280-431 41-194 (248)
177 COG2242 CobL Precorrin-6B meth 99.4 4.4E-12 9.5E-17 108.1 15.0 135 271-429 22-159 (187)
178 PRK11188 rrmJ 23S rRNA methylt 99.4 1.3E-12 2.8E-17 117.7 12.4 106 272-387 39-166 (209)
179 PRK11188 rrmJ 23S rRNA methylt 99.4 8.7E-13 1.9E-17 118.8 11.2 107 45-160 41-166 (209)
180 PRK09328 N5-glutamine S-adenos 99.4 5.6E-12 1.2E-16 119.7 17.2 137 271-429 96-260 (275)
181 COG2264 PrmA Ribosomal protein 99.4 2.1E-12 4.5E-17 119.4 13.7 135 272-432 152-289 (300)
182 TIGR00091 tRNA (guanine-N(7)-) 99.4 3.3E-13 7.2E-18 120.5 8.3 107 54-160 16-133 (194)
183 PF05891 Methyltransf_PK: AdoM 99.4 6.8E-13 1.5E-17 116.0 9.5 160 268-432 34-202 (218)
184 TIGR01177 conserved hypothetic 99.4 1.5E-12 3.2E-17 126.2 13.0 135 38-192 166-309 (329)
185 PRK00312 pcm protein-L-isoaspa 99.4 3.4E-12 7.4E-17 116.0 14.0 111 270-387 65-176 (212)
186 KOG3010 Methyltransferase [Gen 99.4 1E-12 2.3E-17 115.0 9.7 98 57-157 36-135 (261)
187 PRK14968 putative methyltransf 99.4 3.1E-12 6.7E-17 114.1 13.1 133 44-194 13-168 (188)
188 KOG1271 Methyltransferases [Ge 99.4 3.6E-12 7.7E-17 106.3 12.2 137 271-428 51-202 (227)
189 TIGR00536 hemK_fam HemK family 99.4 7.1E-12 1.5E-16 118.9 16.1 138 270-429 100-267 (284)
190 PF13659 Methyltransf_26: Meth 99.4 6.9E-13 1.5E-17 108.5 7.8 103 284-386 1-115 (117)
191 COG2813 RsmC 16S RNA G1207 met 99.4 2.3E-11 5.1E-16 111.7 18.3 114 271-386 146-266 (300)
192 PF05724 TPMT: Thiopurine S-me 99.4 5.3E-12 1.2E-16 113.8 13.8 153 267-431 21-190 (218)
193 PRK00312 pcm protein-L-isoaspa 99.4 1.8E-12 3.9E-17 117.8 10.9 113 38-160 62-176 (212)
194 PRK14121 tRNA (guanine-N(7)-)- 99.4 2.7E-12 5.9E-17 123.7 12.6 114 273-386 112-235 (390)
195 PRK14967 putative methyltransf 99.4 2.8E-12 6E-17 117.4 12.1 114 45-161 27-161 (223)
196 smart00650 rADc Ribosomal RNA 99.4 2E-12 4.3E-17 113.0 10.3 110 44-158 3-112 (169)
197 PRK11805 N5-glutamine S-adenos 99.4 1.5E-11 3.2E-16 117.3 16.9 100 285-385 135-262 (307)
198 PF13659 Methyltransf_26: Meth 99.4 6.8E-13 1.5E-17 108.6 6.8 106 55-160 1-116 (117)
199 PRK09489 rsmC 16S ribosomal RN 99.4 6.4E-12 1.4E-16 121.3 14.5 113 44-160 186-304 (342)
200 PHA03411 putative methyltransf 99.4 7.4E-12 1.6E-16 114.4 14.0 126 282-426 63-209 (279)
201 KOG3010 Methyltransferase [Gen 99.4 7E-12 1.5E-16 109.8 12.9 101 286-388 36-139 (261)
202 PTZ00146 fibrillarin; Provisio 99.4 4.5E-12 9.7E-17 117.2 12.1 107 48-158 126-236 (293)
203 PRK07402 precorrin-6B methylas 99.4 1.4E-11 3E-16 110.5 15.0 110 274-387 31-143 (196)
204 PLN02232 ubiquinone biosynthes 99.4 2.2E-12 4.7E-17 111.3 8.9 113 80-196 1-144 (160)
205 TIGR03438 probable methyltrans 99.4 5.6E-12 1.2E-16 120.4 12.6 104 282-385 62-176 (301)
206 COG4123 Predicted O-methyltran 99.4 2.1E-12 4.6E-17 116.2 8.7 113 48-160 38-171 (248)
207 COG2518 Pcm Protein-L-isoaspar 99.4 3.7E-12 8.1E-17 111.1 9.7 108 42-159 60-169 (209)
208 PF06325 PrmA: Ribosomal prote 99.4 4.2E-12 9.2E-17 118.9 10.7 130 272-431 151-283 (295)
209 PF01135 PCMT: Protein-L-isoas 99.4 2.6E-12 5.6E-17 114.8 8.9 112 269-386 58-172 (209)
210 PHA03411 putative methyltransf 99.4 8.6E-12 1.9E-16 113.9 12.4 131 52-197 62-212 (279)
211 PRK07402 precorrin-6B methylas 99.4 4.4E-12 9.6E-17 113.7 10.4 115 40-161 26-144 (196)
212 PRK00517 prmA ribosomal protei 99.3 6.3E-12 1.4E-16 117.0 11.3 116 52-194 117-233 (250)
213 PRK01544 bifunctional N5-gluta 99.3 1.6E-11 3.6E-16 124.9 15.0 124 284-429 139-291 (506)
214 KOG1499 Protein arginine N-met 99.3 3.2E-12 6.9E-17 118.8 8.6 141 12-158 21-166 (346)
215 PRK13943 protein-L-isoaspartat 99.3 1.4E-11 3E-16 117.4 12.9 111 270-386 67-180 (322)
216 TIGR00406 prmA ribosomal prote 99.3 4.3E-12 9.2E-17 120.5 9.4 100 53-161 158-261 (288)
217 TIGR03534 RF_mod_PrmC protein- 99.3 1.4E-11 3E-16 115.4 12.8 132 43-194 77-236 (251)
218 PRK14966 unknown domain/N5-glu 99.3 1.3E-11 2.8E-16 119.7 12.2 120 54-192 251-398 (423)
219 TIGR03704 PrmC_rel_meth putati 99.3 5.7E-11 1.2E-15 110.1 15.8 137 271-430 73-239 (251)
220 COG2242 CobL Precorrin-6B meth 99.3 9.9E-12 2.1E-16 105.9 9.5 114 41-162 21-138 (187)
221 PRK10901 16S rRNA methyltransf 99.3 5.2E-11 1.1E-15 119.4 16.0 117 273-389 234-375 (427)
222 TIGR00563 rsmB ribosomal RNA s 99.3 4.4E-11 9.5E-16 120.0 15.1 122 272-393 227-375 (426)
223 smart00650 rADc Ribosomal RNA 99.3 5.4E-11 1.2E-15 103.9 13.6 109 273-386 3-113 (169)
224 COG2264 PrmA Ribosomal protein 99.3 2.1E-11 4.4E-16 112.9 11.2 120 53-196 161-285 (300)
225 PF06080 DUF938: Protein of un 99.3 7.4E-11 1.6E-15 102.9 14.0 163 271-433 13-194 (204)
226 cd02440 AdoMet_MTases S-adenos 99.3 2.8E-11 6E-16 96.2 10.7 100 286-385 1-103 (107)
227 TIGR03533 L3_gln_methyl protei 99.3 4.1E-11 8.9E-16 113.2 13.4 103 53-158 120-250 (284)
228 COG2519 GCD14 tRNA(1-methylade 99.3 6.4E-11 1.4E-15 105.6 13.6 133 271-429 82-218 (256)
229 PRK14901 16S rRNA methyltransf 99.3 5.8E-11 1.2E-15 119.4 14.6 116 274-389 243-387 (434)
230 PRK09328 N5-glutamine S-adenos 99.3 5E-11 1.1E-15 113.2 13.3 131 44-193 98-256 (275)
231 PF01135 PCMT: Protein-L-isoas 99.3 8.5E-12 1.8E-16 111.4 7.3 110 39-158 57-171 (209)
232 PF00891 Methyltransf_2: O-met 99.3 8.5E-11 1.9E-15 109.1 14.3 139 273-420 90-241 (241)
233 PRK13943 protein-L-isoaspartat 99.3 2.7E-11 5.9E-16 115.4 11.1 111 39-159 65-180 (322)
234 PRK10611 chemotaxis methyltran 99.3 6.8E-11 1.5E-15 110.4 13.2 171 212-385 40-261 (287)
235 PF05219 DREV: DREV methyltran 99.3 7.8E-11 1.7E-15 105.6 13.0 139 284-431 95-240 (265)
236 COG2890 HemK Methylase of poly 99.3 1.7E-10 3.7E-15 108.3 15.9 121 286-429 113-261 (280)
237 cd02440 AdoMet_MTases S-adenos 99.2 5.2E-11 1.1E-15 94.6 9.9 100 57-158 1-103 (107)
238 TIGR03704 PrmC_rel_meth putati 99.2 1.1E-10 2.4E-15 108.2 12.9 104 55-159 87-216 (251)
239 PRK14903 16S rRNA methyltransf 99.2 1.6E-10 3.4E-15 115.6 14.4 116 275-390 229-370 (431)
240 PRK10901 16S rRNA methyltransf 99.2 5.9E-11 1.3E-15 119.1 11.3 120 44-163 234-376 (427)
241 TIGR00536 hemK_fam HemK family 99.2 7E-11 1.5E-15 112.1 11.1 101 56-159 116-244 (284)
242 PF08704 GCD14: tRNA methyltra 99.2 2.1E-10 4.4E-15 104.6 13.6 136 270-430 27-170 (247)
243 PRK14904 16S rRNA methyltransf 99.2 1.1E-10 2.3E-15 117.9 12.9 114 275-389 242-380 (445)
244 PF05148 Methyltransf_8: Hypot 99.2 1.2E-10 2.5E-15 100.9 11.0 129 270-433 58-187 (219)
245 TIGR00438 rrmJ cell division p 99.2 6.3E-11 1.4E-15 105.5 9.8 99 52-159 30-146 (188)
246 TIGR00438 rrmJ cell division p 99.2 1.9E-10 4.1E-15 102.4 12.6 97 280-386 29-146 (188)
247 PRK11805 N5-glutamine S-adenos 99.2 6.5E-11 1.4E-15 112.9 10.0 101 55-158 134-262 (307)
248 KOG1269 SAM-dependent methyltr 99.2 3E-11 6.5E-16 116.1 7.6 246 52-437 108-358 (364)
249 PHA03412 putative methyltransf 99.2 4.1E-10 8.9E-15 100.6 14.0 137 54-197 49-200 (241)
250 KOG2940 Predicted methyltransf 99.2 2E-11 4.4E-16 105.5 5.4 154 284-438 73-236 (325)
251 PRK00811 spermidine synthase; 99.2 5.3E-11 1.2E-15 112.4 8.7 105 53-158 75-190 (283)
252 PRK14901 16S rRNA methyltransf 99.2 9.3E-11 2E-15 117.9 10.8 119 45-163 243-388 (434)
253 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.6E-10 5.7E-15 106.8 13.0 112 277-388 65-201 (264)
254 PF03291 Pox_MCEL: mRNA cappin 99.2 6.1E-11 1.3E-15 113.4 8.4 109 54-162 62-189 (331)
255 PF06325 PrmA: Ribosomal prote 99.2 9.6E-11 2.1E-15 109.8 9.4 116 52-194 159-278 (295)
256 PRK14904 16S rRNA methyltransf 99.2 1.7E-10 3.8E-15 116.3 11.7 123 38-163 234-381 (445)
257 COG2813 RsmC 16S RNA G1207 met 99.2 1.9E-10 4.1E-15 105.8 10.6 131 44-192 148-285 (300)
258 PRK14902 16S rRNA methyltransf 99.2 4.9E-10 1.1E-14 113.2 14.7 113 274-387 241-380 (444)
259 TIGR00563 rsmB ribosomal RNA s 99.2 1.8E-10 4E-15 115.6 11.1 123 41-163 225-372 (426)
260 PRK14903 16S rRNA methyltransf 99.2 1.5E-10 3.4E-15 115.7 10.5 122 41-163 224-370 (431)
261 PF01739 CheR: CheR methyltran 99.1 1E-10 2.3E-15 103.2 7.3 103 283-385 31-174 (196)
262 PRK14902 16S rRNA methyltransf 99.1 2.2E-10 4.8E-15 115.7 10.7 117 45-162 241-382 (444)
263 PF06080 DUF938: Protein of un 99.1 2.5E-10 5.5E-15 99.6 9.2 141 55-195 26-188 (204)
264 TIGR00446 nop2p NOL1/NOP2/sun 99.1 2.6E-10 5.7E-15 106.8 10.0 114 48-163 65-203 (264)
265 PRK04457 spermidine synthase; 99.1 1.8E-10 4E-15 107.4 8.8 117 41-158 52-176 (262)
266 PF00891 Methyltransf_2: O-met 99.1 4.3E-10 9.4E-15 104.4 11.3 111 44-164 90-204 (241)
267 COG2890 HemK Methylase of poly 99.1 3E-10 6.6E-15 106.6 10.2 113 57-191 113-254 (280)
268 PRK00811 spermidine synthase; 99.1 4.2E-10 9.2E-15 106.3 10.9 104 282-385 75-190 (283)
269 COG1041 Predicted DNA modifica 99.1 1E-09 2.2E-14 102.9 13.2 144 263-432 175-331 (347)
270 PLN02781 Probable caffeoyl-CoA 99.1 2.4E-10 5.2E-15 104.8 9.0 111 44-160 57-179 (234)
271 PRK04457 spermidine synthase; 99.1 6.5E-10 1.4E-14 103.7 11.7 105 282-387 65-178 (262)
272 PF03291 Pox_MCEL: mRNA cappin 99.1 3.3E-10 7.2E-15 108.4 9.4 106 283-388 62-188 (331)
273 KOG3045 Predicted RNA methylas 99.1 6.7E-10 1.4E-14 98.1 10.2 126 271-433 167-293 (325)
274 PF05219 DREV: DREV methyltran 99.1 6.9E-10 1.5E-14 99.6 10.4 124 27-161 62-190 (265)
275 PRK13168 rumA 23S rRNA m(5)U19 99.1 1.4E-09 3.1E-14 109.8 13.9 112 270-386 284-400 (443)
276 PF05148 Methyltransf_8: Hypot 99.1 6E-10 1.3E-14 96.5 9.5 127 36-194 53-180 (219)
277 PLN02672 methionine S-methyltr 99.1 1.2E-09 2.5E-14 118.2 13.9 125 284-429 119-301 (1082)
278 COG1352 CheR Methylase of chem 99.1 1.8E-09 3.9E-14 99.5 13.1 166 217-385 22-240 (268)
279 PF01739 CheR: CheR methyltran 99.1 4.1E-10 8.8E-15 99.5 8.1 106 53-160 30-176 (196)
280 KOG1975 mRNA cap methyltransfe 99.1 2.6E-10 5.5E-15 104.0 6.9 119 42-160 105-238 (389)
281 PRK01581 speE spermidine synth 99.1 2.5E-09 5.4E-14 101.8 13.7 138 283-436 150-302 (374)
282 PLN02366 spermidine synthase 99.1 5.5E-10 1.2E-14 105.9 9.3 117 42-158 76-205 (308)
283 PRK00274 ksgA 16S ribosomal RN 99.1 6.9E-10 1.5E-14 104.5 9.9 96 36-135 24-119 (272)
284 PLN02781 Probable caffeoyl-CoA 99.1 1.6E-09 3.4E-14 99.4 12.1 105 281-388 66-180 (234)
285 PRK13168 rumA 23S rRNA m(5)U19 99.1 3.3E-10 7.1E-15 114.4 8.3 111 44-160 287-401 (443)
286 PHA03412 putative methyltransf 99.1 1.1E-09 2.4E-14 97.8 10.4 93 284-381 50-158 (241)
287 PRK03612 spermidine synthase; 99.0 1E-09 2.2E-14 112.5 11.4 139 282-436 296-449 (521)
288 PRK14896 ksgA 16S ribosomal RN 99.0 8.4E-10 1.8E-14 103.1 9.5 93 38-135 13-105 (258)
289 KOG3045 Predicted RNA methylas 99.0 1.4E-09 3E-14 96.1 10.1 125 38-196 163-288 (325)
290 PRK10909 rsmD 16S rRNA m(2)G96 99.0 3.2E-09 7E-14 94.2 12.5 116 272-388 41-161 (199)
291 PRK10909 rsmD 16S rRNA m(2)G96 99.0 1.5E-09 3.3E-14 96.3 9.6 119 38-160 36-160 (199)
292 KOG2352 Predicted spermine/spe 99.0 4.4E-09 9.5E-14 102.3 13.3 103 56-160 50-162 (482)
293 KOG2899 Predicted methyltransf 99.0 2.2E-09 4.7E-14 94.1 10.1 101 283-385 58-208 (288)
294 PRK04148 hypothetical protein; 99.0 3.4E-09 7.3E-14 86.3 10.5 106 43-161 5-111 (134)
295 KOG3178 Hydroxyindole-O-methyl 99.0 6.1E-09 1.3E-13 97.4 13.6 102 56-164 179-280 (342)
296 PRK15128 23S rRNA m(5)C1962 me 99.0 1.1E-09 2.3E-14 107.9 8.6 107 54-161 220-341 (396)
297 PLN02476 O-methyltransferase 99.0 1.5E-09 3.2E-14 100.6 9.0 106 50-161 114-230 (278)
298 PLN02366 spermidine synthase 99.0 4.1E-09 8.9E-14 100.0 12.1 104 282-385 90-205 (308)
299 PLN02672 methionine S-methyltr 99.0 1E-09 2.2E-14 118.6 8.9 122 54-194 118-298 (1082)
300 PRK01581 speE spermidine synth 99.0 1.5E-09 3.3E-14 103.2 8.9 106 52-158 148-267 (374)
301 TIGR00417 speE spermidine synt 99.0 1.1E-09 2.3E-14 103.2 7.9 106 52-158 70-185 (270)
302 KOG2940 Predicted methyltransf 99.0 5.8E-10 1.3E-14 96.6 5.1 100 55-158 73-173 (325)
303 TIGR00417 speE spermidine synt 99.0 4.2E-09 9.2E-14 99.1 11.5 103 283-385 72-185 (270)
304 PRK11783 rlmL 23S rRNA m(2)G24 99.0 1E-09 2.2E-14 116.6 7.9 105 54-160 538-657 (702)
305 PRK10611 chemotaxis methyltran 99.0 3E-09 6.5E-14 99.4 10.2 105 55-160 116-263 (287)
306 PRK15128 23S rRNA m(5)C1962 me 99.0 6.7E-09 1.4E-13 102.3 12.8 104 283-386 220-339 (396)
307 TIGR00479 rumA 23S rRNA (uraci 99.0 8.8E-09 1.9E-13 103.9 14.1 111 271-385 280-395 (431)
308 PRK03522 rumB 23S rRNA methylu 99.0 9.9E-10 2.1E-14 105.8 6.7 107 48-160 167-275 (315)
309 PF02390 Methyltransf_4: Putat 99.0 1E-09 2.3E-14 97.4 6.2 104 57-160 20-134 (195)
310 KOG1975 mRNA cap methyltransfe 98.9 5.5E-09 1.2E-13 95.4 10.5 164 280-443 114-329 (389)
311 COG2519 GCD14 tRNA(1-methylade 98.9 7.1E-09 1.5E-13 92.7 11.0 115 38-162 78-198 (256)
312 KOG2899 Predicted methyltransf 98.9 2.7E-09 5.9E-14 93.5 8.1 105 53-158 57-208 (288)
313 COG3963 Phospholipid N-methylt 98.9 5.8E-09 1.3E-13 86.2 9.6 117 42-161 36-158 (194)
314 PTZ00338 dimethyladenosine tra 98.9 2.7E-09 5.9E-14 100.7 8.9 95 38-137 20-117 (294)
315 KOG2904 Predicted methyltransf 98.9 9E-09 1.9E-13 92.0 11.5 120 269-388 131-287 (328)
316 TIGR00755 ksgA dimethyladenosi 98.9 5.7E-09 1.2E-13 97.4 10.8 93 38-135 13-108 (253)
317 COG2263 Predicted RNA methylas 98.9 7.7E-08 1.7E-12 81.9 16.3 123 280-430 42-167 (198)
318 PF12147 Methyltransf_20: Puta 98.9 6E-08 1.3E-12 88.3 16.3 145 282-428 134-295 (311)
319 PRK00274 ksgA 16S ribosomal RN 98.9 5.7E-09 1.2E-13 98.3 9.9 87 270-359 29-115 (272)
320 PRK14896 ksgA 16S ribosomal RN 98.9 9.3E-09 2E-13 96.1 11.1 88 269-360 15-102 (258)
321 KOG2904 Predicted methyltransf 98.9 1E-08 2.3E-13 91.6 10.5 122 36-160 127-286 (328)
322 PF10294 Methyltransf_16: Puta 98.9 7.3E-09 1.6E-13 90.4 9.4 108 281-389 43-159 (173)
323 PF01596 Methyltransf_3: O-met 98.9 2E-09 4.2E-14 96.0 5.7 113 44-161 34-157 (205)
324 PRK03522 rumB 23S rRNA methylu 98.9 9.9E-09 2.2E-13 98.9 10.9 100 283-386 173-274 (315)
325 PF02390 Methyltransf_4: Putat 98.9 5.8E-09 1.2E-13 92.7 8.5 101 286-386 20-133 (195)
326 PRK11727 23S rRNA mA1618 methy 98.9 1E-08 2.2E-13 97.3 10.6 144 283-432 114-293 (321)
327 TIGR00479 rumA 23S rRNA (uraci 98.9 2.9E-09 6.4E-14 107.4 7.3 109 45-158 283-395 (431)
328 PRK03612 spermidine synthase; 98.9 4.8E-09 1E-13 107.6 8.4 106 53-159 296-415 (521)
329 KOG1500 Protein arginine N-met 98.9 1.1E-08 2.4E-13 93.7 9.3 116 39-158 162-281 (517)
330 COG2521 Predicted archaeal met 98.9 1.1E-08 2.3E-13 89.3 8.7 140 276-429 127-275 (287)
331 COG2263 Predicted RNA methylas 98.9 7.2E-09 1.6E-13 88.1 7.4 114 51-192 42-161 (198)
332 COG4122 Predicted O-methyltran 98.9 7.8E-09 1.7E-13 91.9 8.0 115 41-160 45-167 (219)
333 COG4122 Predicted O-methyltran 98.8 2.1E-08 4.6E-13 89.2 10.6 108 280-390 56-170 (219)
334 TIGR02085 meth_trns_rumB 23S r 98.8 7.8E-09 1.7E-13 101.8 8.5 105 50-160 229-335 (374)
335 PLN02476 O-methyltransferase 98.8 3.5E-08 7.5E-13 91.6 12.2 106 280-388 115-230 (278)
336 PF01596 Methyltransf_3: O-met 98.8 7.8E-09 1.7E-13 92.2 7.6 103 283-388 45-157 (205)
337 KOG1661 Protein-L-isoaspartate 98.8 4.7E-09 1E-13 90.2 5.8 105 44-158 70-192 (237)
338 TIGR00478 tly hemolysin TlyA f 98.8 1.4E-08 3.1E-13 91.7 9.0 101 44-158 64-170 (228)
339 KOG1331 Predicted methyltransf 98.8 7.7E-09 1.7E-13 93.6 6.7 116 38-163 31-147 (293)
340 COG1041 Predicted DNA modifica 98.8 2E-08 4.4E-13 94.3 9.7 123 36-160 179-311 (347)
341 COG0030 KsgA Dimethyladenosine 98.8 2.6E-08 5.6E-13 90.7 9.8 97 38-137 14-111 (259)
342 PF03141 Methyltransf_29: Puta 98.8 6.8E-09 1.5E-13 101.3 6.2 97 285-388 119-221 (506)
343 PF08704 GCD14: tRNA methyltra 98.8 2.3E-08 5E-13 91.3 9.3 136 38-195 24-167 (247)
344 PTZ00338 dimethyladenosine tra 98.8 2.6E-08 5.7E-13 94.1 10.0 88 270-360 23-112 (294)
345 COG0220 Predicted S-adenosylme 98.8 2.7E-08 5.9E-13 89.7 9.4 102 285-386 50-164 (227)
346 PF05185 PRMT5: PRMT5 arginine 98.8 2.1E-08 4.5E-13 100.1 9.4 101 55-158 187-296 (448)
347 PF07942 N2227: N2227-like pro 98.8 3.2E-07 6.8E-12 84.5 16.3 143 283-431 56-242 (270)
348 TIGR00755 ksgA dimethyladenosi 98.8 1.1E-07 2.4E-12 88.8 13.4 103 270-381 16-121 (253)
349 PF10294 Methyltransf_16: Puta 98.8 1.7E-08 3.8E-13 88.1 7.3 106 52-160 43-157 (173)
350 KOG1269 SAM-dependent methyltr 98.8 1.1E-08 2.3E-13 98.6 6.3 111 280-390 107-219 (364)
351 COG2521 Predicted archaeal met 98.8 1.7E-08 3.7E-13 88.1 6.9 139 48-194 128-272 (287)
352 KOG1661 Protein-L-isoaspartate 98.8 3.7E-08 8.1E-13 84.7 8.7 110 270-385 67-192 (237)
353 COG1352 CheR Methylase of chem 98.8 5.9E-08 1.3E-12 89.5 10.5 105 54-160 96-242 (268)
354 COG0220 Predicted S-adenosylme 98.7 2.2E-08 4.7E-13 90.4 7.4 107 53-159 47-164 (227)
355 KOG3191 Predicted N6-DNA-methy 98.7 4.8E-07 1.1E-11 76.1 14.4 126 284-430 44-192 (209)
356 PF01170 UPF0020: Putative RNA 98.7 9.1E-08 2E-12 84.0 10.7 116 270-385 15-150 (179)
357 COG3963 Phospholipid N-methylt 98.7 2.2E-07 4.7E-12 77.0 11.9 119 266-388 31-158 (194)
358 PLN02589 caffeoyl-CoA O-methyl 98.7 2.9E-08 6.3E-13 91.0 7.5 111 44-160 68-191 (247)
359 PF12147 Methyltransf_20: Puta 98.7 1.3E-07 2.8E-12 86.1 11.6 146 52-197 133-296 (311)
360 TIGR02085 meth_trns_rumB 23S r 98.7 8.1E-08 1.8E-12 94.6 11.3 101 282-386 232-334 (374)
361 PF11968 DUF3321: Putative met 98.7 3.4E-07 7.4E-12 80.2 13.3 118 285-431 53-181 (219)
362 TIGR00478 tly hemolysin TlyA f 98.7 1E-07 2.2E-12 86.2 10.4 144 270-431 61-217 (228)
363 PF02475 Met_10: Met-10+ like- 98.7 8.2E-08 1.8E-12 84.9 9.5 105 41-156 90-199 (200)
364 KOG1499 Protein arginine N-met 98.7 4.6E-08 9.9E-13 91.4 8.1 102 281-383 58-164 (346)
365 KOG3178 Hydroxyindole-O-methyl 98.7 2.4E-07 5.2E-12 86.9 12.7 145 284-436 178-335 (342)
366 PLN02589 caffeoyl-CoA O-methyl 98.7 9.1E-08 2E-12 87.7 9.1 103 283-388 79-192 (247)
367 TIGR00095 RNA methyltransferas 98.7 1.3E-07 2.8E-12 83.7 9.8 121 36-160 30-160 (189)
368 TIGR00095 RNA methyltransferas 98.7 4.7E-07 1E-11 80.1 13.2 104 283-387 49-160 (189)
369 PRK04148 hypothetical protein; 98.6 3.8E-07 8.3E-12 74.4 11.0 104 274-389 7-112 (134)
370 PF05185 PRMT5: PRMT5 arginine 98.6 1.5E-07 3.3E-12 93.9 10.3 99 284-383 187-294 (448)
371 PRK11727 23S rRNA mA1618 methy 98.6 1.5E-07 3.3E-12 89.4 9.1 76 53-128 113-197 (321)
372 TIGR03439 methyl_EasF probable 98.6 4.2E-07 9.2E-12 86.4 11.9 106 53-158 75-196 (319)
373 KOG3420 Predicted RNA methylas 98.6 8E-08 1.7E-12 77.4 5.6 84 278-361 43-126 (185)
374 KOG0820 Ribosomal RNA adenine 98.6 2.2E-07 4.7E-12 83.3 8.7 85 41-129 45-132 (315)
375 PLN02823 spermine synthase 98.6 1.7E-07 3.7E-12 90.0 8.8 102 53-158 102-219 (336)
376 PF01170 UPF0020: Putative RNA 98.6 1.3E-07 2.8E-12 83.0 7.0 121 35-157 9-149 (179)
377 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 1.7E-07 3.7E-12 85.8 7.8 142 52-194 54-234 (256)
378 KOG0820 Ribosomal RNA adenine 98.6 5.1E-07 1.1E-11 81.0 10.2 85 270-357 45-131 (315)
379 KOG3420 Predicted RNA methylas 98.5 6E-08 1.3E-12 78.1 3.6 79 50-130 44-124 (185)
380 PF02475 Met_10: Met-10+ like- 98.5 5E-07 1.1E-11 80.0 9.8 98 281-383 99-199 (200)
381 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.5 9E-08 2E-12 87.6 5.2 143 283-430 56-238 (256)
382 COG0030 KsgA Dimethyladenosine 98.5 6.4E-07 1.4E-11 81.8 10.5 87 270-358 17-104 (259)
383 COG1092 Predicted SAM-dependen 98.5 1.3E-07 2.7E-12 91.9 6.1 124 36-161 201-338 (393)
384 PF11968 DUF3321: Putative met 98.5 7.1E-07 1.5E-11 78.2 10.0 120 56-197 53-179 (219)
385 PRK04338 N(2),N(2)-dimethylgua 98.5 5.8E-07 1.2E-11 88.2 9.9 98 284-385 58-157 (382)
386 PLN02823 spermine synthase 98.5 9.9E-07 2.1E-11 84.8 11.0 102 283-385 103-219 (336)
387 PRK11933 yebU rRNA (cytosine-C 98.5 1.7E-06 3.8E-11 86.8 12.9 110 280-389 110-245 (470)
388 PF03602 Cons_hypoth95: Conser 98.5 1.1E-07 2.5E-12 83.4 3.6 125 34-160 20-154 (183)
389 PRK00050 16S rRNA m(4)C1402 me 98.5 5.1E-07 1.1E-11 84.7 8.1 89 270-359 6-100 (296)
390 TIGR02143 trmA_only tRNA (urac 98.5 4.4E-07 9.5E-12 88.6 8.0 108 45-160 189-312 (353)
391 KOG1500 Protein arginine N-met 98.5 1.1E-06 2.4E-11 80.8 9.8 109 275-385 169-281 (517)
392 PRK05031 tRNA (uracil-5-)-meth 98.4 3.9E-07 8.4E-12 89.4 7.0 99 55-160 207-321 (362)
393 PF02527 GidB: rRNA small subu 98.4 1.8E-06 3.9E-11 75.6 10.4 124 286-432 51-176 (184)
394 PRK11933 yebU rRNA (cytosine-C 98.4 1E-06 2.3E-11 88.4 10.1 112 51-163 110-246 (470)
395 PF03602 Cons_hypoth95: Conser 98.4 4.4E-07 9.5E-12 79.7 6.5 123 267-389 24-156 (183)
396 KOG1331 Predicted methyltransf 98.4 3E-07 6.4E-12 83.4 5.3 111 270-391 34-148 (293)
397 PRK00050 16S rRNA m(4)C1402 me 98.4 3.4E-07 7.3E-12 85.9 5.8 84 44-127 9-97 (296)
398 PRK04338 N(2),N(2)-dimethylgua 98.4 5.7E-07 1.2E-11 88.3 7.6 96 55-158 58-157 (382)
399 COG0421 SpeE Spermidine syntha 98.4 2.8E-06 6E-11 79.3 11.4 101 285-385 78-189 (282)
400 COG1092 Predicted SAM-dependen 98.4 1.3E-06 2.9E-11 84.9 9.4 103 284-387 218-337 (393)
401 PF00398 RrnaAD: Ribosomal RNA 98.4 2.2E-06 4.8E-11 80.3 10.7 105 38-147 14-119 (262)
402 KOG2915 tRNA(1-methyladenosine 98.4 1.8E-05 3.9E-10 71.2 15.5 134 272-430 94-234 (314)
403 KOG3191 Predicted N6-DNA-methy 98.4 5E-06 1.1E-10 70.1 10.5 124 51-192 40-186 (209)
404 PF07942 N2227: N2227-like pro 98.3 5.7E-06 1.2E-10 76.3 12.0 137 54-195 56-238 (270)
405 TIGR02143 trmA_only tRNA (urac 98.3 2.5E-06 5.4E-11 83.3 10.2 108 272-386 187-311 (353)
406 PF08123 DOT1: Histone methyla 98.3 6E-07 1.3E-11 79.9 5.4 117 38-157 26-156 (205)
407 PF08123 DOT1: Histone methyla 98.3 1.2E-06 2.5E-11 78.1 7.1 115 270-385 29-157 (205)
408 KOG3987 Uncharacterized conser 98.3 2.3E-07 5E-12 79.4 2.3 136 284-429 113-258 (288)
409 COG0500 SmtA SAM-dependent met 98.3 7.2E-06 1.6E-10 71.4 11.9 102 287-391 52-160 (257)
410 KOG3987 Uncharacterized conser 98.3 4.9E-07 1.1E-11 77.5 3.8 121 27-158 82-206 (288)
411 PF09243 Rsm22: Mitochondrial 98.3 3.5E-06 7.6E-11 79.2 9.8 115 44-162 23-142 (274)
412 COG2520 Predicted methyltransf 98.3 3.4E-06 7.4E-11 80.2 9.7 113 40-162 176-292 (341)
413 COG0500 SmtA SAM-dependent met 98.3 7.5E-06 1.6E-10 71.2 11.2 102 58-163 52-159 (257)
414 PRK00536 speE spermidine synth 98.3 8.2E-06 1.8E-10 75.3 11.5 95 282-385 71-170 (262)
415 TIGR03439 methyl_EasF probable 98.3 2.3E-05 5E-10 74.7 14.9 111 273-385 68-196 (319)
416 PF01728 FtsJ: FtsJ-like methy 98.3 5.3E-07 1.1E-11 79.7 3.6 109 270-388 7-141 (181)
417 PRK05031 tRNA (uracil-5-)-meth 98.3 4.6E-06 1E-10 81.8 10.3 96 285-386 208-320 (362)
418 COG2265 TrmA SAM-dependent met 98.3 1.5E-05 3.2E-10 79.3 13.9 113 270-386 280-396 (432)
419 COG0742 N6-adenine-specific me 98.3 1.8E-05 3.9E-10 68.4 12.0 122 266-387 24-155 (187)
420 PF04672 Methyltransf_19: S-ad 98.2 8.7E-06 1.9E-10 74.5 10.7 141 285-427 70-232 (267)
421 PF09243 Rsm22: Mitochondrial 98.2 1.2E-05 2.5E-10 75.7 11.8 127 283-427 33-164 (274)
422 PF02384 N6_Mtase: N-6 DNA Met 98.2 4.8E-06 1E-10 80.4 9.3 118 270-387 33-184 (311)
423 PF10672 Methyltrans_SAM: S-ad 98.2 3.4E-06 7.3E-11 78.9 7.8 112 272-386 114-238 (286)
424 COG0144 Sun tRNA and rRNA cyto 98.2 4.6E-05 1E-09 74.3 15.5 115 277-391 150-293 (355)
425 PF10672 Methyltrans_SAM: S-ad 98.2 2.2E-06 4.9E-11 80.0 6.0 109 53-161 122-240 (286)
426 COG2520 Predicted methyltransf 98.2 2.1E-05 4.5E-10 74.9 12.6 128 281-426 186-315 (341)
427 PRK00536 speE spermidine synth 98.2 8.3E-06 1.8E-10 75.2 9.4 105 42-158 57-170 (262)
428 PF04816 DUF633: Family of unk 98.2 2.3E-05 4.9E-10 69.9 11.9 120 287-430 1-123 (205)
429 PF01728 FtsJ: FtsJ-like methy 98.2 1.8E-06 4E-11 76.2 4.5 108 44-160 10-140 (181)
430 COG4076 Predicted RNA methylas 98.2 2.7E-06 5.9E-11 71.8 5.1 104 52-159 30-135 (252)
431 PF02527 GidB: rRNA small subu 98.2 8.4E-06 1.8E-10 71.4 8.4 92 57-158 51-147 (184)
432 PF09445 Methyltransf_15: RNA 98.2 1.2E-06 2.6E-11 74.4 3.0 71 57-127 2-76 (163)
433 COG3897 Predicted methyltransf 98.1 8.2E-06 1.8E-10 69.8 7.6 116 269-388 65-181 (218)
434 PF01564 Spermine_synth: Sperm 98.1 3E-06 6.4E-11 78.3 5.4 107 52-159 74-191 (246)
435 COG0357 GidB Predicted S-adeno 98.1 2.4E-05 5.2E-10 69.6 10.7 127 284-433 68-197 (215)
436 COG2265 TrmA SAM-dependent met 98.1 4E-06 8.7E-11 83.3 6.2 112 44-160 283-397 (432)
437 COG0421 SpeE Spermidine syntha 98.1 1.2E-05 2.6E-10 75.1 8.8 113 44-158 63-189 (282)
438 COG0742 N6-adenine-specific me 98.1 2.6E-05 5.7E-10 67.3 10.3 124 34-159 21-154 (187)
439 KOG2730 Methylase [General fun 98.1 2.4E-06 5.2E-11 74.2 3.6 114 14-127 49-172 (263)
440 KOG1663 O-methyltransferase [S 98.1 3.1E-05 6.6E-10 68.4 10.4 103 51-158 70-182 (237)
441 PF01564 Spermine_synth: Sperm 98.1 1.7E-05 3.7E-10 73.3 9.0 105 282-386 75-191 (246)
442 PF01269 Fibrillarin: Fibrilla 98.1 3.6E-05 7.8E-10 67.9 10.2 103 48-158 67-177 (229)
443 PF00398 RrnaAD: Ribosomal RNA 98.1 2.7E-05 5.8E-10 73.0 10.2 104 270-378 17-123 (262)
444 COG0293 FtsJ 23S rRNA methylas 98.0 3.8E-05 8.3E-10 67.4 10.1 108 271-388 32-161 (205)
445 COG0293 FtsJ 23S rRNA methylas 98.0 4.1E-05 9E-10 67.2 10.0 111 41-160 31-160 (205)
446 PF05958 tRNA_U5-meth_tr: tRNA 98.0 6.1E-06 1.3E-10 80.6 5.4 67 44-111 187-255 (352)
447 PF01269 Fibrillarin: Fibrilla 98.0 0.00018 4E-09 63.5 13.7 149 270-432 57-213 (229)
448 KOG1663 O-methyltransferase [S 98.0 6.3E-05 1.4E-09 66.4 10.6 110 272-387 65-184 (237)
449 COG4798 Predicted methyltransf 98.0 4.9E-05 1.1E-09 64.9 9.4 145 274-428 39-202 (238)
450 TIGR02987 met_A_Alw26 type II 98.0 4.9E-05 1.1E-09 78.8 11.5 78 283-360 31-123 (524)
451 COG0144 Sun tRNA and rRNA cyto 98.0 4.6E-05 1E-09 74.3 10.4 121 44-164 146-293 (355)
452 COG1189 Predicted rRNA methyla 98.0 0.0001 2.2E-09 65.7 11.4 148 270-430 65-223 (245)
453 PF02384 N6_Mtase: N-6 DNA Met 97.9 1.9E-05 4.1E-10 76.3 7.1 123 38-160 30-184 (311)
454 KOG1709 Guanidinoacetate methy 97.9 6.5E-05 1.4E-09 65.2 9.1 104 282-385 100-205 (271)
455 PF09445 Methyltransf_15: RNA 97.9 1.2E-05 2.6E-10 68.4 4.3 70 286-356 2-76 (163)
456 COG0116 Predicted N6-adenine-s 97.9 0.00017 3.6E-09 69.3 12.4 117 270-386 178-344 (381)
457 KOG2352 Predicted spermine/spe 97.9 8.6E-05 1.9E-09 72.9 10.6 104 285-388 50-163 (482)
458 PF05958 tRNA_U5-meth_tr: tRNA 97.9 4.8E-05 1E-09 74.3 8.9 71 270-342 184-255 (352)
459 PRK11760 putative 23S rRNA C24 97.9 7.2E-05 1.6E-09 70.7 9.5 88 281-379 209-296 (357)
460 TIGR00308 TRM1 tRNA(guanine-26 97.9 2.7E-05 5.8E-10 76.1 7.0 98 55-159 45-147 (374)
461 PF04816 DUF633: Family of unk 97.9 0.00015 3.3E-09 64.7 11.2 115 58-195 1-120 (205)
462 PF04672 Methyltransf_19: S-ad 97.9 4.9E-05 1.1E-09 69.6 7.9 142 47-188 60-227 (267)
463 PRK11760 putative 23S rRNA C24 97.9 5.8E-05 1.3E-09 71.3 8.6 87 53-152 210-296 (357)
464 TIGR00308 TRM1 tRNA(guanine-26 97.9 9.2E-05 2E-09 72.4 10.3 98 284-385 45-146 (374)
465 PF03059 NAS: Nicotianamine sy 97.8 5.9E-05 1.3E-09 69.9 7.5 103 54-159 120-230 (276)
466 PRK13699 putative methylase; P 97.8 0.00058 1.3E-08 62.3 13.5 59 267-327 148-206 (227)
467 PF03059 NAS: Nicotianamine sy 97.8 0.0002 4.3E-09 66.4 10.5 103 284-386 121-230 (276)
468 KOG3201 Uncharacterized conser 97.8 4.5E-05 9.8E-10 63.0 5.5 152 274-448 20-179 (201)
469 COG3897 Predicted methyltransf 97.8 0.00011 2.3E-09 63.2 7.8 106 44-157 69-176 (218)
470 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00011 2.4E-09 69.4 8.8 112 277-388 79-221 (283)
471 TIGR02987 met_A_Alw26 type II 97.8 9.3E-05 2E-09 76.7 9.0 74 54-127 31-119 (524)
472 KOG2187 tRNA uracil-5-methyltr 97.7 3.6E-05 7.8E-10 75.6 4.8 111 46-159 375-490 (534)
473 COG0357 GidB Predicted S-adeno 97.7 9.3E-05 2E-09 65.9 6.9 94 55-157 68-166 (215)
474 COG4076 Predicted RNA methylas 97.7 0.0001 2.2E-09 62.5 6.2 97 285-385 34-134 (252)
475 PF13679 Methyltransf_32: Meth 97.7 0.00021 4.5E-09 60.1 8.2 99 281-385 23-130 (141)
476 COG0116 Predicted N6-adenine-s 97.7 0.00036 7.9E-09 67.1 10.5 124 34-159 171-344 (381)
477 COG1889 NOP1 Fibrillarin-like 97.7 0.0041 8.9E-08 53.9 15.6 148 270-432 60-215 (231)
478 PF13679 Methyltransf_32: Meth 97.6 0.00015 3.2E-09 61.1 6.8 89 52-147 23-122 (141)
479 PF13578 Methyltransf_24: Meth 97.6 1.5E-05 3.2E-10 63.6 0.3 97 59-159 1-105 (106)
480 COG4627 Uncharacterized protei 97.6 3.5E-05 7.7E-10 63.2 2.4 55 334-388 32-88 (185)
481 KOG1709 Guanidinoacetate methy 97.6 0.00032 6.9E-09 61.0 8.3 117 38-157 86-204 (271)
482 TIGR00006 S-adenosyl-methyltra 97.6 0.00029 6.2E-09 66.5 8.8 90 270-359 7-102 (305)
483 KOG2798 Putative trehalase [Ca 97.6 0.00055 1.2E-08 63.1 9.9 148 284-436 151-342 (369)
484 COG4262 Predicted spermidine s 97.6 0.00094 2E-08 62.8 11.4 104 282-386 288-407 (508)
485 KOG2915 tRNA(1-methyladenosine 97.6 0.00049 1.1E-08 62.2 9.1 107 41-154 92-204 (314)
486 COG1189 Predicted rRNA methyla 97.5 0.00036 7.7E-09 62.2 7.9 107 44-158 68-177 (245)
487 TIGR01444 fkbM_fam methyltrans 97.5 0.00027 5.8E-09 59.7 6.3 55 57-111 1-59 (143)
488 PF13578 Methyltransf_24: Meth 97.5 2.3E-05 4.9E-10 62.5 -0.3 96 288-386 1-105 (106)
489 COG4798 Predicted methyltransf 97.4 0.001 2.2E-08 57.1 9.0 144 45-194 39-200 (238)
490 COG1889 NOP1 Fibrillarin-like 97.4 0.0012 2.7E-08 57.0 9.7 102 49-158 71-179 (231)
491 PRK10742 putative methyltransf 97.4 0.00073 1.6E-08 61.3 8.5 89 273-362 76-177 (250)
492 KOG2730 Methylase [General fun 97.4 0.00019 4.2E-09 62.6 4.5 73 284-357 95-173 (263)
493 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.00013 2.8E-09 69.0 3.8 117 47-163 78-223 (283)
494 COG2384 Predicted SAM-dependen 97.4 0.0034 7.4E-08 55.4 12.1 123 282-428 15-140 (226)
495 PLN02668 indole-3-acetate carb 97.4 0.0088 1.9E-07 58.4 15.8 147 284-430 64-308 (386)
496 PF07091 FmrO: Ribosomal RNA m 97.4 0.00072 1.6E-08 61.1 7.8 92 271-363 91-185 (251)
497 KOG4589 Cell division protein 97.3 0.0018 3.9E-08 55.2 9.0 101 281-391 67-189 (232)
498 PF05971 Methyltransf_10: Prot 97.3 0.0016 3.6E-08 61.0 9.7 79 284-362 103-190 (299)
499 COG1064 AdhP Zn-dependent alco 97.3 0.0037 8E-08 59.7 11.9 101 276-389 159-262 (339)
500 KOG2187 tRNA uracil-5-methyltr 97.3 0.00045 9.7E-09 68.2 5.7 109 276-386 376-490 (534)
No 1
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=100.00 E-value=3.7e-56 Score=453.59 Aligned_cols=452 Identities=85% Similarity=1.359 Sum_probs=402.2
Q ss_pred cCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC
Q 043471 20 HSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF 99 (485)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~ 99 (485)
++...+.+.||.+..+..++...+..+++.+...++.+|||||||+|.++..|++.+.+|+|+|+|++|++.+++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~ 82 (475)
T PLN02336 3 HSVDLTVEAMMLDSKASDLDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHY 82 (475)
T ss_pred ccccccHHHHhhhcchhhcCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccC
Confidence 45567788899998888899999999999998878889999999999999999999889999999999999887765545
Q ss_pred CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCC
Q 043471 100 ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYRE 179 (485)
Q Consensus 100 ~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 179 (485)
+++.++++|+....+++++++||+|+|+.+++|++++....++++++++|+|||++++.+.+........+..++.+++.
T Consensus 83 ~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~ 162 (475)
T PLN02336 83 KNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYRE 162 (475)
T ss_pred CceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecC
Confidence 68999999997655677889999999999999999877889999999999999999999988766555666667888888
Q ss_pred hhHHHHHhhhcceecCCCCceeEEEeeeeecceEEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHh
Q 043471 180 PRFYSKVFKECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVF 259 (485)
Q Consensus 180 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 259 (485)
..+|.++|.++++....+.........+..++.+..+..+|....+..+.+.......|..+++...|...++..+..+|
T Consensus 163 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~f~ 242 (475)
T PLN02336 163 PRFYTKVFKECHTRDEDGNSFELSLVGCKCIGAYVKNKKNQNQICWLWQKVSSTNDKGFQRFLDNVQYKSSGILRYERVF 242 (475)
T ss_pred hHHHHHHHHHheeccCCCCEEEEEEEEeechhhhhhccCCcceEEEEEEeecCCcchhHHHHhhhhccccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999888877777776666778888888888888999999999
Q ss_pred ccccccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEcc
Q 043471 260 GVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVAD 339 (485)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d 339 (485)
|..+....+...++.+++.+.++++.+|||||||+|..+..+++..+++++|+|+|+.+++.|+++..+...++++.++|
T Consensus 243 g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d 322 (475)
T PLN02336 243 GEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVAD 322 (475)
T ss_pred CCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcC
Confidence 99999999988899999999888889999999999999999998778899999999999999999887666789999999
Q ss_pred CCCCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHH
Q 043471 340 CTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQML 419 (485)
Q Consensus 340 ~~~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 419 (485)
+...++++++||+|+|..+++|++++..++++++|+|||||+++++++......+...+..+....+..+.+..++.+++
T Consensus 323 ~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 323 CTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQML 402 (475)
T ss_pred cccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 99988888899999999999999999999999999999999999998877655555556666666666788999999999
Q ss_pred HhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhhhhhhhhhhcc
Q 043471 420 KDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCFFHLDCLS 471 (485)
Q Consensus 420 ~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
+++||+++.+++.+.+|..++..|.+.++....++...++++.+......+.
T Consensus 403 ~~aGF~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (475)
T PLN02336 403 KDAGFDDVIAEDRTDQFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWK 454 (475)
T ss_pred HHCCCeeeeeecchHHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999988887765554443
No 2
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.97 E-value=6.6e-30 Score=238.67 Aligned_cols=229 Identities=41% Similarity=0.765 Sum_probs=201.2
Q ss_pred HHhhhhhhccccchhHHHHHhccccccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHH
Q 043471 239 QQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINM 318 (485)
Q Consensus 239 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~ 318 (485)
+.|+|..+|+..++..|+.++|.+++++++.+.+..+++.+.++++.+|||||||+|..+..+++..+++|+|+|+|+.|
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~ 87 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKM 87 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999988777899999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCC-CC
Q 043471 319 ISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGT-PS 395 (485)
Q Consensus 319 ~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~ 395 (485)
++.|+++... ..++.+..+|+.+.++++++||+|++..+++|++ ++..++++++++|||||+++++++...... ..
T Consensus 88 ~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~ 166 (263)
T PTZ00098 88 VNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWD 166 (263)
T ss_pred HHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcH
Confidence 9999998754 4579999999998888889999999999999986 889999999999999999999987654421 22
Q ss_pred hhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhhhhhhhhh
Q 043471 396 VEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCFFHLD 468 (485)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (485)
..+..+.......+.+..++.++|+++||+++..++.+.++...+...++.++++++++.+.++++.......
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (263)
T PTZ00098 167 EEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLELLQVELKKLEEKKEEFLKLYSEKEYNSLKD 239 (263)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHHHHHHHHHHHhHHHHHHhcCHHHHHHHHH
Confidence 2233344444456789999999999999999999999999999999999999999999999999887665433
No 3
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.1e-29 Score=231.12 Aligned_cols=229 Identities=27% Similarity=0.445 Sum_probs=197.5
Q ss_pred HHHhhccCc---hhHHHhhhh-hhccccchhHHHHHhccccccCCc-------hHHHHHHHHHcCCCCCCEEEEECCCCC
Q 043471 227 WQKVRSQND---RGFQQFLDN-VQYKLNGILRYERVFGVGFVSTGG-------IETTKEFVAKLDLKPGQKVLDVGCGIG 295 (485)
Q Consensus 227 ~~~~~~~~~---~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~vLDiGcG~G 295 (485)
.+.+..+|+ +.|..|+|+ +.|++. |+.... ..+.+.+++.++++||++|||||||+|
T Consensus 17 ~~~i~~HYDl~n~fy~l~Ld~~~~Ysca------------yf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG 84 (283)
T COG2230 17 AENIQAHYDLSNDFYRLFLDPSMTYSCA------------YFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWG 84 (283)
T ss_pred hhhhhhHhhcchHHHHHhcCCCCceeeE------------EeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChh
Confidence 344444544 568899988 888886 444442 356778999999999999999999999
Q ss_pred hhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHH
Q 043471 296 GGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKS 371 (485)
Q Consensus 296 ~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~ 371 (485)
.+++++|++++++|+|+++|++|.+.+++++. ++..++++...|..+++ ++||-|+|.++++|+. +.+.+|+.
T Consensus 85 ~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~ 161 (283)
T COG2230 85 GLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKK 161 (283)
T ss_pred HHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHH
Confidence 99999999999999999999999999999765 56668999999988764 5599999999999995 59999999
Q ss_pred HHhcCCCCcEEEEEecccCCC---CCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHH
Q 043471 372 FFKWLKPGGTVLISDYCKSFG---TPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIE 448 (485)
Q Consensus 372 ~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
++++|+|||++++........ ....+..+++.|.| .+++...+.+..+++||.+.+++....||+.++..|.++|+
T Consensus 162 ~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG-~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~ 240 (283)
T COG2230 162 VYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGG-ELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFE 240 (283)
T ss_pred HHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCC-cCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHH
Confidence 999999999999998766553 33456678888877 47789999999999999999999999999999999999999
Q ss_pred hcHHHHHHHhhhhhhhhhhhhcc
Q 043471 449 KDKDAFIKDFSEVFCFFHLDCLS 471 (485)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
.+++++...++++++++|...|.
T Consensus 241 ~~~~~a~~~~~e~~~r~w~~yl~ 263 (283)
T COG2230 241 ANRDEAIALYDERFYRMWELYLA 263 (283)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999988775
No 4
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.97 E-value=2.1e-29 Score=234.28 Aligned_cols=225 Identities=28% Similarity=0.448 Sum_probs=169.4
Q ss_pred hhHHHhhhh-hhccccchhHHHHHhcc--ccccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEE
Q 043471 236 RGFQQFLDN-VQYKLNGILRYERVFGV--GFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGI 312 (485)
Q Consensus 236 ~~~~~~~d~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~ 312 (485)
+.|..|+|+ +.|++. +|.. .-.......+++.+++++.++||.+|||||||+|.++..+++++|++|+|+
T Consensus 19 dfy~l~Ld~~m~YS~~-------~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gi 91 (273)
T PF02353_consen 19 DFYRLFLDPTMKYSCA-------YFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGI 91 (273)
T ss_dssp HHHTTTS-TT---S-----------SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEE
T ss_pred HHHHHhcCCCCCCCCe-------ecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEE
Confidence 557778877 777765 1111 111112235677889999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccccccc--CCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 313 DLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 313 D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
++|+++.+.+++++. ++..++++...|..+++ .+||.|++.++++|+ .+.+.+++++.++|||||++++....
T Consensus 92 tlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 92 TLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp ES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred ECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 999999999999887 44567999999998765 389999999999999 47899999999999999999998765
Q ss_pred cCCC-------CCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhh
Q 043471 389 KSFG-------TPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEV 461 (485)
Q Consensus 389 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (485)
.... .....+.+++.|.+ .+++.+++...++++||++.+++..+.||.+++..|.+++.++++++.+.|+++
T Consensus 169 ~~~~~~~~~~~~~~~~i~kyiFPgg-~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~~~i~~~~~~~ 247 (273)
T PF02353_consen 169 HRDPPYHAERRSSSDFIRKYIFPGG-YLPSLSEILRAAEDAGLEVEDVENLGRHYARTLRAWRENFDANREEIIALFDEE 247 (273)
T ss_dssp E--HHHHHCTTCCCHHHHHHTSTTS----BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHHSHHH
T ss_pred cccccchhhcCCCceEEEEeeCCCC-CCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 4332 12256778888876 477899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcc
Q 043471 462 FCFFHLDCLS 471 (485)
Q Consensus 462 ~~~~~~~~~~ 471 (485)
++|+|.-.|.
T Consensus 248 f~r~w~~yl~ 257 (273)
T PF02353_consen 248 FYRMWRYYLA 257 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 5
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.93 E-value=1.2e-24 Score=212.78 Aligned_cols=217 Identities=27% Similarity=0.374 Sum_probs=175.8
Q ss_pred hhHHHhhhh-hhccccchhHHHHHhccccccC------CchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCE
Q 043471 236 RGFQQFLDN-VQYKLNGILRYERVFGVGFVST------GGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308 (485)
Q Consensus 236 ~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~ 308 (485)
+.|..+++. |.|+++ +|.. ....+...+++.+.++++.+|||||||+|.++..+++..+++
T Consensus 125 ~~y~l~ld~~m~ys~g------------~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~ 192 (383)
T PRK11705 125 DLFEAMLDPRMQYSCG------------YWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVS 192 (383)
T ss_pred HHHHHhcCCCCccccc------------ccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCE
Confidence 347777766 666654 3322 123456678888899999999999999999999999887889
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 309 v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
|+|+|+|+.|++.|+++..+. .+++...|..++ +++||+|++..+++|+. +...+++++.++|||||++++++
T Consensus 193 V~giDlS~~~l~~A~~~~~~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 193 VVGVTISAEQQKLAQERCAGL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEEeCCHHHHHHHHHHhccC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999999999988643 478888887665 47899999999999985 46789999999999999999987
Q ss_pred cccCCC--CCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhhhhh
Q 043471 387 YCKSFG--TPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCF 464 (485)
Q Consensus 387 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (485)
...... .......+++.+.+ .+++.+++.+.++ .||++.+++..+.||.+++..|.++++++++++.+.|++++++
T Consensus 268 i~~~~~~~~~~~~i~~yifp~g-~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~~~~~~~~r 345 (383)
T PRK11705 268 IGSNKTDTNVDPWINKYIFPNG-CLPSVRQIAQASE-GLFVMEDWHNFGADYDRTLMAWHENFEAAWPELADNYSERFYR 345 (383)
T ss_pred ccCCCCCCCCCCCceeeecCCC-cCCCHHHHHHHHH-CCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 654432 12233445555544 4678888888766 5899999999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q 043471 465 FHLDCLS 471 (485)
Q Consensus 465 ~~~~~~~ 471 (485)
+|..+|.
T Consensus 346 ~w~~yl~ 352 (383)
T PRK11705 346 MWRYYLL 352 (383)
T ss_pred HHHHHHH
Confidence 9987765
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.92 E-value=3.9e-24 Score=191.94 Aligned_cols=161 Identities=30% Similarity=0.508 Sum_probs=134.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
.-+.+++.+...+|.+|||+|||||.++..+++.. ..+|+|+|+|+.|++.|+++....+ .+++|+++|++++||+++
T Consensus 39 Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 39 WRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 44577788777799999999999999999999987 3699999999999999999997543 249999999999999999
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH-H----------------------HHHHhc
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF-S----------------------EYIKQR 405 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-~----------------------~~~~~~ 405 (485)
+||+|.+..+|++++|++++|+|++|+|||||++++.+...+........ . .++...
T Consensus 119 sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eS 198 (238)
T COG2226 119 SFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAES 198 (238)
T ss_pred ccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHH
Confidence 99999999999999999999999999999999999998877654332111 1 111111
Q ss_pred CCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 406 GYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 406 ~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
...+++.+++.++++++||+.+..+.
T Consensus 199 i~~~p~~~~l~~~~~~~gf~~i~~~~ 224 (238)
T COG2226 199 IRRFPDQEELKQMIEKAGFEEVRYEN 224 (238)
T ss_pred HHhCCCHHHHHHHHHhcCceEEeeEe
Confidence 23567889999999999999887544
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.90 E-value=8.1e-24 Score=192.63 Aligned_cols=160 Identities=26% Similarity=0.474 Sum_probs=94.0
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~f 350 (485)
.+++.+...++.+|||+|||||.++..+++.. +.+|+|+|+|+.|++.|+++....+ .+++++++|++++|+++++|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sf 117 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSF 117 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-E
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCce
Confidence 45566677889999999999999999999876 3699999999999999999986432 38999999999999999999
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH----------------------HHHHHhcCCC
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF----------------------SEYIKQRGYD 408 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~----------------------~~~~~~~~~~ 408 (485)
|+|++..++++++|+.++++|++|+|||||++++.++..+.......+ ..++...-..
T Consensus 118 D~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 118 DAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp EEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----------------------------
T ss_pred eEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999877654221111 0111111124
Q ss_pred CCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 409 LHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 409 ~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
+++.+++.++|+++||+.+..+..+
T Consensus 198 f~~~~~~~~~l~~~Gf~~v~~~~~~ 222 (233)
T PF01209_consen 198 FPSPEELKELLEEAGFKNVEYRPLT 222 (233)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5678999999999999988765543
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.90 E-value=4.5e-23 Score=185.07 Aligned_cols=156 Identities=24% Similarity=0.341 Sum_probs=133.0
Q ss_pred CCCCCChhHHHHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--Cc
Q 043471 1 MGTQSNHGEREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GH 78 (485)
Q Consensus 1 ~~~~~~~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~ 78 (485)
|.|.......+.-+.++++.+..|...+ +-.....+..+++.+++.+...+|.+|||||||||..+..+++.. .+
T Consensus 1 ~~~~~~~~k~~~v~~vF~~ia~~YD~~n---~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~ 77 (238)
T COG2226 1 FKMVAKDEKQEKVQKVFDKVAKKYDLMN---DLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGE 77 (238)
T ss_pred CCcccccccHHHHHHHHHhhHHHHHhhc---ccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCce
Confidence 3444444455677888888888776444 334566788899999999988899999999999999999999984 79
Q ss_pred EEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEE
Q 043471 79 VIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIF 156 (485)
Q Consensus 79 v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 156 (485)
|+|+|+|++|++.|+++.... .+++|+++|++. +||+|++||+|.++..++++++ .+++|+|++|+|||||.++
T Consensus 78 v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~--LPf~D~sFD~vt~~fglrnv~d--~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 78 VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN--LPFPDNSFDAVTISFGLRNVTD--IDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred EEEEECCHHHHHHHHHHhhccCccceEEEEechhh--CCCCCCccCEEEeeehhhcCCC--HHHHHHHHHHhhcCCeEEE
Confidence 999999999999999997653 259999999999 8899999999999999999998 7799999999999999999
Q ss_pred EEeccCC
Q 043471 157 FRESCFH 163 (485)
Q Consensus 157 ~~~~~~~ 163 (485)
+.+....
T Consensus 154 vle~~~p 160 (238)
T COG2226 154 VLEFSKP 160 (238)
T ss_pred EEEcCCC
Confidence 9877643
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.90 E-value=5e-22 Score=192.54 Aligned_cols=171 Identities=27% Similarity=0.451 Sum_probs=137.8
Q ss_pred HHHHHHHHHcCC-----CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCC
Q 043471 270 ETTKEFVAKLDL-----KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTK 342 (485)
Q Consensus 270 ~~~~~~~~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~ 342 (485)
+....+++.+.+ .++.+|||||||+|.++..++++++++|+|+|+|+.|++.|+++.. +...++++.++|+.+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 456677887776 6788999999999999999999878899999999999999998765 344579999999999
Q ss_pred CCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----ChhHH----HHHHhcC-CCCCCH
Q 043471 343 KTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP-----SVEFS----EYIKQRG-YDLHDV 412 (485)
Q Consensus 343 ~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~----~~~~~~~-~~~~~~ 412 (485)
+|+++++||+|++..+++|++|+..++++++|+|||||++++.++......+ ..... ....... ....+.
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~ 259 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCST 259 (340)
T ss_pred CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCH
Confidence 9999999999999999999999999999999999999999998865432111 11111 1111111 123578
Q ss_pred HHHHHHHHhCCCeEEEEeecchHHHHHH
Q 043471 413 KSYGQMLKDAGFVDIIAEDRTEQFVQVL 440 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~~~~~~~~~~~ 440 (485)
+++.++++++||+++.+++.+.+..+..
T Consensus 260 ~~~~~~l~~aGf~~v~~~d~s~~v~~~~ 287 (340)
T PLN02244 260 SDYVKLAESLGLQDIKTEDWSEHVAPFW 287 (340)
T ss_pred HHHHHHHHHCCCCeeEeeeCcHHHHHHH
Confidence 9999999999999999998887655443
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.88 E-value=1.3e-21 Score=182.71 Aligned_cols=159 Identities=24% Similarity=0.358 Sum_probs=126.8
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhc----CCCCCeEEEEccCCCCCCCCC
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAI----GLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~----~~~~~i~~~~~d~~~~~~~~~ 348 (485)
+++.+.+.++.+|||+|||+|.++..+++..+ .+|+|+|+|++|++.|+++.. ....+++++++|+.++|++++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~ 144 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC 144 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence 34556677889999999999999999988753 599999999999999987753 223479999999999999999
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHH---------------------HHhcCC
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY---------------------IKQRGY 407 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~---------------------~~~~~~ 407 (485)
+||+|++..+++|++++..++++++|+|||||++++.++..........+..+ ....-.
T Consensus 145 sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~ 224 (261)
T PLN02233 145 YFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSIN 224 (261)
T ss_pred CEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876543211111110 000012
Q ss_pred CCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 408 DLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 408 ~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
.+.+.+++.++|+++||+++......
T Consensus 225 ~f~s~~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 225 EYLTGEELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred hcCCHHHHHHHHHHCCCCEEEEEEcC
Confidence 36789999999999999988765543
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.86 E-value=2.7e-22 Score=182.65 Aligned_cols=143 Identities=22% Similarity=0.341 Sum_probs=89.9
Q ss_pred HHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHH
Q 043471 14 KNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIK 90 (485)
Q Consensus 14 ~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~ 90 (485)
++.++..+..|..-.. -.....+..+++.+++.+...+|.+|||+|||||..+..++++ ..+|+|+|+|++|++
T Consensus 10 ~~~Fd~ia~~YD~~n~---~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~ 86 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMND---LLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLE 86 (233)
T ss_dssp ------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHH
T ss_pred HHHHHHHHHHhCCCcc---ccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHH
Confidence 5567777776664322 1334456677788888888888999999999999999999986 358999999999999
Q ss_pred HHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 91 KNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 91 ~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.|+++... ..+++++++|+++ +|+++++||+|++++.++++++ ..++++|++|+|||||.+++.+....
T Consensus 87 ~a~~k~~~~~~~~i~~v~~da~~--lp~~d~sfD~v~~~fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 87 VARKKLKREGLQNIEFVQGDAED--LPFPDNSFDAVTCSFGLRNFPD--RERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp HHHHHHHHTT--SEEEEE-BTTB----S-TT-EEEEEEES-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HHHHHHHhhCCCCeeEEEcCHHH--hcCCCCceeEEEHHhhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 99988643 2489999999999 7789999999999999999998 66999999999999999999876543
No 12
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.86 E-value=1.3e-20 Score=173.25 Aligned_cols=174 Identities=21% Similarity=0.391 Sum_probs=139.4
Q ss_pred CEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 285 QKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
++|||||||+|..+..+++.+ +++++|+|+|+.+++.+++++.. +..++++...|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 379999999999999999886 57999999999999999998753 456789999999777664 58999999999999
Q ss_pred cCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHH
Q 043471 362 IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQ 441 (485)
Q Consensus 362 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~ 441 (485)
++++..++++++++|||||++++.++......... . ........+..+|.++++++||++++..+.+.+|.+.+
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~---~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~l- 153 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIE--H---EETTSYLVTREEWAELLARNNLRVVEGVDASLEIANFL- 153 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCcccc--c---cccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhhc-
Confidence 99999999999999999999999986432211100 0 00112356889999999999999999999999998765
Q ss_pred HHHHHHHhcHHHHHH-Hhhhhhhhhh
Q 043471 442 RELDAIEKDKDAFIK-DFSEVFCFFH 466 (485)
Q Consensus 442 ~~~~~~~~~~~~~~~-~~~~~~~~~~ 466 (485)
|...+.++++++.. .+++.+.+.|
T Consensus 154 -~~~~f~~~~~~~~~~~~~~~~~~~~ 178 (224)
T smart00828 154 -YDPGFEDNLERLYQDDLDEVTKRHF 178 (224)
T ss_pred -cChhHHHHHHHhccccchHHHHHHH
Confidence 66777777777666 3666566655
No 13
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.86 E-value=6.1e-21 Score=178.49 Aligned_cols=153 Identities=21% Similarity=0.353 Sum_probs=120.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
....+++.+...++.+|||||||+|.++..++++. +.+|+|+|+|+.|++.|+++ ++++.++|+.+++ ++++
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-~~~~ 89 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWK-PKPD 89 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC-CCCC
Confidence 45678888888888999999999999999999876 57999999999999999764 5789999998774 5679
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh---------hHHHHHHh----cCCCCCCHHHHH
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV---------EFSEYIKQ----RGYDLHDVKSYG 416 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------~~~~~~~~----~~~~~~~~~~~~ 416 (485)
||+|+++.+++|++++..++++++++|||||++++..+......... .+...... .+..+.+.+.+.
T Consensus 90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 169 (255)
T PRK14103 90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYA 169 (255)
T ss_pred ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHH
Confidence 99999999999999999999999999999999999854321111100 11111111 122456899999
Q ss_pred HHHHhCCCeEEEEe
Q 043471 417 QMLKDAGFVDIIAE 430 (485)
Q Consensus 417 ~~l~~aGf~~~~~~ 430 (485)
++|+++||++...+
T Consensus 170 ~~l~~aGf~v~~~~ 183 (255)
T PRK14103 170 ELLTDAGCKVDAWE 183 (255)
T ss_pred HHHHhCCCeEEEEe
Confidence 99999999865433
No 14
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.86 E-value=7.3e-20 Score=185.55 Aligned_cols=277 Identities=18% Similarity=0.229 Sum_probs=175.8
Q ss_pred CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++... ..+++++++|+.+. ++.++||+|+|+-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~---~~~~~fDlIvsNP 214 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN---IEKQKFDFIVSNP 214 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh---CcCCCccEEEECC
Confidence 3468999999999999999876 56999999999999999987532 24789999997542 2356899999862
Q ss_pred h--------------hhccCh----------HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHH
Q 043471 129 L--------------LMYLSD----------KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYS 184 (485)
Q Consensus 129 ~--------------~~~~~~----------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (485)
. ..|-+. ..+..+++++.++|+|||.+++. ... ...+...
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~---------------~q~~~v~ 278 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF---------------KQEEAVT 278 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC---------------chHHHHH
Confidence 1 111110 12456788899999999999884 221 1455677
Q ss_pred HHhhhcceec------CCCCceeEEEeeeeecc-eEEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHH
Q 043471 185 KVFKECQIQD------ASGNSFELSLVGYKCIG-AYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYER 257 (485)
Q Consensus 185 ~~~~~~~~~~------~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 257 (485)
+++.+.|+.. ..|.. ....+.-..+. .+.+...+. +.......+..++....-+.
T Consensus 279 ~~~~~~g~~~~~~~~D~~g~~-R~v~~~~~~~~rs~~rr~g~~---------~~~~q~~~~e~~~p~~~i~~-------- 340 (506)
T PRK01544 279 QIFLDHGYNIESVYKDLQGHS-RVILISPINLNRSYARRIGKS---------LSGVQQNLLDNELPKYLFSK-------- 340 (506)
T ss_pred HHHHhcCCCceEEEecCCCCc-eEEEeccccCCcceeccCCCC---------CCHHHHHHHHhhhhhhCCCH--------
Confidence 7777777632 22211 00000000000 000110000 00000000111111111000
Q ss_pred HhccccccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEE
Q 043471 258 VFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEF 335 (485)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~ 335 (485)
+.+.-..+..+||||||.|.++..+|... ...++|+|++...+..+..+....+ .|+.+
T Consensus 341 -------------------eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~ 401 (506)
T PRK01544 341 -------------------EKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLL 401 (506)
T ss_pred -------------------HHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEE
Confidence 11212235689999999999999999986 6799999999998888777654322 37777
Q ss_pred EEccCCCC--CCCCCCccEEEEcccccccCC--------HHHHHHHHHhcCCCCcEEEEEe
Q 043471 336 EVADCTKK--TYPENSFDVIYSRDTILHIQD--------KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 336 ~~~d~~~~--~~~~~~fD~i~~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...|+..+ -++++++|.|+.++.=-|.+. .+.+++.+.++|||||.+.+.+
T Consensus 402 ~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 402 FPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 77776432 367789999999765544421 5678999999999999998874
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.84 E-value=1e-19 Score=168.08 Aligned_cols=162 Identities=22% Similarity=0.436 Sum_probs=129.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
...+++.+.++++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+ .++++..+|+.+.+++++
T Consensus 34 ~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 34 RKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3567788888889999999999999999999875 4699999999999999999875332 478999999998888888
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh------------HH----------HHHHhcC
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE------------FS----------EYIKQRG 406 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~------------~~----------~~~~~~~ 406 (485)
+||+|++..+++|++++.++++++.++|+|||++++.+...+....... +. .......
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 193 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQEST 193 (231)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765432211000 00 0011112
Q ss_pred CCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 407 YDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 407 ~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
..+++.+++.++|+++||+++++....
T Consensus 194 ~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 194 RDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 246788999999999999998876544
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.84 E-value=4.2e-20 Score=175.58 Aligned_cols=150 Identities=18% Similarity=0.221 Sum_probs=119.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCCCCccEEEEcccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... ...++++.++|++++++++++||+|++.+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 35679999999999999999876 78999999999999999987642 2347899999999888778899999999999
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEecccCCCC------CChhHHHHHHhcC---CCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGT------PSVEFSEYIKQRG---YDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
+|++|+..+++++.++|||||.+++++....... ............. ..+++++++.++|+++||+++++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 9999999999999999999999999987543210 0000111111111 146789999999999999998775
Q ss_pred ec
Q 043471 431 DR 432 (485)
Q Consensus 431 ~~ 432 (485)
-.
T Consensus 289 G~ 290 (322)
T PLN02396 289 GF 290 (322)
T ss_pred ee
Confidence 43
No 17
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.83 E-value=1.2e-19 Score=169.57 Aligned_cols=161 Identities=24% Similarity=0.390 Sum_probs=129.3
Q ss_pred CCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccC
Q 043471 33 SKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
...++...+....+++.+...++.+|||||||+|..+..+++. +.+|+|+|+|++|++.|+++....+++.+..+|+..
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~ 110 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILK 110 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCccc
Confidence 4445555567788999999899999999999999999999875 779999999999999999987655689999999987
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc------CCCCCCCCChhHHHH
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR------KHNPTHYREPRFYSK 185 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 185 (485)
.++++++||+|++..+++|++..+...++++++++|||||.+++.++.......... ........+++.|..
T Consensus 111 --~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 111 --KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGD 188 (263)
T ss_pred --CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence 667789999999999999998555889999999999999999998875433211110 011223347889999
Q ss_pred HhhhcceecC
Q 043471 186 VFKECQIQDA 195 (485)
Q Consensus 186 ~~~~~~~~~~ 195 (485)
+++++||..+
T Consensus 189 ~l~~aGF~~v 198 (263)
T PTZ00098 189 LIKSCNFQNV 198 (263)
T ss_pred HHHHCCCCee
Confidence 9999999553
No 18
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.83 E-value=1.6e-19 Score=158.13 Aligned_cols=156 Identities=26% Similarity=0.395 Sum_probs=128.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC-------CEEEEEeCCHHHHHHHHHHhc--CCCC--CeEEEEccCC
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD-------VHVVGIDLSINMISFALERAI--GLKC--SVEFEVADCT 341 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-------~~v~g~D~s~~~~~~a~~~~~--~~~~--~i~~~~~d~~ 341 (485)
...+..+....++++||++||||.++..+.+..+ .+|+.+|+||.|++.++++.. ++.. .+.++.+|++
T Consensus 90 d~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 90 DMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE 169 (296)
T ss_pred HHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence 3567778888899999999999999998888652 689999999999999999874 3333 4899999999
Q ss_pred CCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH-HH------------------
Q 043471 342 KKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE-YI------------------ 402 (485)
Q Consensus 342 ~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~------------------ 402 (485)
++||++.+||..++.+.+....++++++++++|+|||||++.+.++...+..+..++.. +.
T Consensus 170 ~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sY 249 (296)
T KOG1540|consen 170 DLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSY 249 (296)
T ss_pred cCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhh
Confidence 99999999999999999999999999999999999999999999988776433222111 11
Q ss_pred ---HhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 403 ---KQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 403 ---~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
...-..+++.+++..+.+++||..+.
T Consensus 250 qYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 250 QYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 11112567889999999999999875
No 19
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.83 E-value=3.2e-20 Score=173.24 Aligned_cols=177 Identities=17% Similarity=0.168 Sum_probs=131.5
Q ss_pred HHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHH
Q 043471 12 IQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSV 88 (485)
Q Consensus 12 ~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~ 88 (485)
.-+++|+..+..|...... ........+++.+++.+...++.+|||+|||+|.++..++++ + .+|+|+|+|++|
T Consensus 34 ~v~~~f~~~A~~YD~~~~~---~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~m 110 (261)
T PLN02233 34 ERQALFNRIAPVYDNLNDL---LSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQ 110 (261)
T ss_pred HHHHHHHHhhhHHHHhhhh---hcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHH
Confidence 4577888877776632211 111223345556666777778899999999999999999886 3 489999999999
Q ss_pred HHHHHHHcC-----CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 89 IKKNEEVNG-----HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 89 ~~~a~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
++.|+++.. ...+++++++|+.+ +|+++++||+|+++.+++|+++ ...++++++|+|||||++++.+....
T Consensus 111 l~~A~~r~~~~~~~~~~~i~~~~~d~~~--lp~~~~sfD~V~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 111 LAVAASRQELKAKSCYKNIEWIEGDATD--LPFDDCYFDAITMGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred HHHHHHHhhhhhhccCCCeEEEEccccc--CCCCCCCEeEEEEecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 999987642 12479999999988 6788999999999999999987 66999999999999999999887643
Q ss_pred CCCcccc--------------C--CC-C---------CCCCChhHHHHHhhhcceecC
Q 043471 164 QSGDSKR--------------K--HN-P---------THYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 164 ~~~~~~~--------------~--~~-~---------~~~~~~~~~~~~~~~~~~~~~ 195 (485)
....... . .. . ..+.+++.+.++++++||...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~ 244 (261)
T PLN02233 187 TQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSA 244 (261)
T ss_pred CcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEE
Confidence 3211000 0 00 0 123477788889999998654
No 20
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.83 E-value=2.7e-20 Score=163.49 Aligned_cols=150 Identities=25% Similarity=0.345 Sum_probs=118.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
-+|.+|||||||.|.++..+|+. |++|+|+|+|+.+++.|+.+....+..+++.....+++....++||+|+|.++++|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 37889999999999999999988 89999999999999999998876666777888888887655589999999999999
Q ss_pred cCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh--HHHHH---HhcCC----CCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 362 IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE--FSEYI---KQRGY----DLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 362 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~---~~~~~----~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
++|+..+++.+.+++||||.+++++.+......... ..+++ .|.+. .+.-++++...+..+|+.+.+....
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 999999999999999999999999887543211100 01111 11121 2345678888888889988766443
No 21
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.82 E-value=6.9e-19 Score=167.62 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=126.0
Q ss_pred HHHHHHcCC-CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 273 KEFVAKLDL-KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 273 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
..+++.+.+ .++.+|||||||+|.++..+++.. +.+++++|+|+.|++.|+++.. ..++++..+|+.++++++++|
T Consensus 102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~~sF 179 (340)
T PLN02490 102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPTDYA 179 (340)
T ss_pred HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCCCce
Confidence 345565544 467899999999999999888875 4699999999999999998754 236889999999999888999
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|+|++..+++|++++..++++++++|||||++++.+..... .+...........+.+.+++.++|+++||+.+.++
T Consensus 180 DvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~----~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT----FWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred eEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc----hhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999999999999999999887543221 11111111111234678999999999999999998
Q ss_pred ecchHHH
Q 043471 431 DRTEQFV 437 (485)
Q Consensus 431 ~~~~~~~ 437 (485)
+....+.
T Consensus 256 ~i~~~~~ 262 (340)
T PLN02490 256 RIGPKWY 262 (340)
T ss_pred EcChhhc
Confidence 8776543
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.82 E-value=5.8e-19 Score=169.22 Aligned_cols=161 Identities=24% Similarity=0.287 Sum_probs=123.0
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHH--hcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER--AIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~--~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
..++..+...++.+|||||||+|.++..++......|+|+|+|+.++..++.. ..+...++.+..+|+.++|+ +++|
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~F 190 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAF 190 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCc
Confidence 34455665556789999999999999999987444799999999999765443 22234579999999999987 7889
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCC--hhHHHHHH-hcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPS--VEFSEYIK-QRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
|+|+|..+++|..++..+|++++++|+|||.+++.++........ .....+.. +..+..++...+.++|+++||+++
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE
Confidence 999999999999999999999999999999999986543322111 11111211 112235689999999999999999
Q ss_pred EEeecch
Q 043471 428 IAEDRTE 434 (485)
Q Consensus 428 ~~~~~~~ 434 (485)
.+.+.+.
T Consensus 271 ~~~~~~~ 277 (322)
T PRK15068 271 RIVDVSV 277 (322)
T ss_pred EEEeCCC
Confidence 8877654
No 23
>PLN02244 tocopherol O-methyltransferase
Probab=99.81 E-value=1.5e-19 Score=175.25 Aligned_cols=149 Identities=19% Similarity=0.253 Sum_probs=116.8
Q ss_pred hHHHhccCCC-----CCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCC
Q 043471 43 RPEVLSLLPP-----YEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPD 113 (485)
Q Consensus 43 ~~~~~~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~ 113 (485)
...+++.+.. .++.+|||||||+|.++..|+++ +.+|+|+|+|+.|++.|+++... .++++++++|+.+
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~-- 179 (340)
T PLN02244 102 IEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN-- 179 (340)
T ss_pred HHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc--
Confidence 3445666655 67889999999999999999987 78999999999999999886532 2479999999988
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc---------------cCCCCCCCC
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK---------------RKHNPTHYR 178 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---------------~~~~~~~~~ 178 (485)
+++++++||+|++..+++|+++ ...++++++++|||||.+++.++......... .......+.
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~ 257 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWC 257 (340)
T ss_pred CCCCCCCccEEEECCchhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCC
Confidence 6778899999999999999998 56999999999999999999876532111000 011112234
Q ss_pred ChhHHHHHhhhcceecC
Q 043471 179 EPRFYSKVFKECQIQDA 195 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (485)
+.+.+..+++++||..+
T Consensus 258 s~~~~~~~l~~aGf~~v 274 (340)
T PLN02244 258 STSDYVKLAESLGLQDI 274 (340)
T ss_pred CHHHHHHHHHHCCCCee
Confidence 67889999999998553
No 24
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.81 E-value=3.6e-19 Score=166.47 Aligned_cols=157 Identities=21% Similarity=0.218 Sum_probs=121.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCC-CCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKT-YPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~-~~~~ 348 (485)
...+++.+. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++... ...+++++++|+.+++ ++++
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 456777775 45679999999999999999987 78999999999999999998764 3457899999987763 5568
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCC-------ChhHHHHHH---hc---CCCCCCHHHH
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP-------SVEFSEYIK---QR---GYDLHDVKSY 415 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~~~~---~~---~~~~~~~~~~ 415 (485)
+||+|++..+++|+.++..+++++.++|||||++++..++...... ......... .. .....+++++
T Consensus 112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 191 (255)
T PRK11036 112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQV 191 (255)
T ss_pred CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999988655321100 000000000 00 0124678999
Q ss_pred HHHHHhCCCeEEEEe
Q 043471 416 GQMLKDAGFVDIIAE 430 (485)
Q Consensus 416 ~~~l~~aGf~~~~~~ 430 (485)
.++|+++||+++...
T Consensus 192 ~~~l~~aGf~~~~~~ 206 (255)
T PRK11036 192 YQWLEEAGWQIMGKT 206 (255)
T ss_pred HHHHHHCCCeEeeee
Confidence 999999999998554
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.81 E-value=1.5e-18 Score=164.13 Aligned_cols=161 Identities=19% Similarity=0.240 Sum_probs=120.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHH--hcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER--AIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~--~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
..++..+...++++|||||||+|.++..++......|+|+|+|+.|+..++.. ......++.+..+++.+++.. .+|
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~F 189 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAF 189 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCc
Confidence 34666666677899999999999999888877434799999999999765432 222234678888888888754 589
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCC--hhHHHHHH-hcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPS--VEFSEYIK-QRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
|+|+|..+++|.+++..+|++++++|||||.+++.+......... .....+.. ...+..++...+..+|+++||+.+
T Consensus 190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V 269 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENF 269 (314)
T ss_pred CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEE
Confidence 999999999999999999999999999999999986543221110 01111111 122346789999999999999999
Q ss_pred EEeecch
Q 043471 428 IAEDRTE 434 (485)
Q Consensus 428 ~~~~~~~ 434 (485)
++.+...
T Consensus 270 ~i~~~~~ 276 (314)
T TIGR00452 270 RILDVLK 276 (314)
T ss_pred EEEeccC
Confidence 8876544
No 26
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.80 E-value=6.1e-20 Score=159.71 Aligned_cols=137 Identities=33% Similarity=0.557 Sum_probs=108.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
..++.+|||||||+|.++..+++. +.+++|+|+++.+++. .++.....+....+.++++||+|+|+.+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK---------RNVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH---------TTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh---------hhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 567889999999999999999776 7799999999999988 134455554445555678999999999999
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH--HHHh--cCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE--YIKQ--RGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
|++|+..+++++.++|||||+++++++...... ...+.. +... .+..+++.+++.++++++||++++
T Consensus 90 ~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 90 HLPDPEEFLKELSRLLKPGGYLVISDPNRDDPS-PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp GSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHH-HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred hcccHHHHHHHHHHhcCCCCEEEEEEcCCcchh-hhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999987653210 001111 1111 234678999999999999999875
No 27
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.80 E-value=1.9e-18 Score=162.28 Aligned_cols=152 Identities=23% Similarity=0.392 Sum_probs=119.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
....++..+.+.++.+|||||||+|.++..+++.+ +.+|+|+|+|+.|++.|+++.. ++.+..+|+..+. ++++
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~-~~~~ 93 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQ-PPQA 93 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccC-CCCC
Confidence 46678888888889999999999999999999876 5799999999999999998853 6889999998764 4568
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh---------hHHHHHHhcC---CCCCCHHHHHH
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV---------EFSEYIKQRG---YDLHDVKSYGQ 417 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------~~~~~~~~~~---~~~~~~~~~~~ 417 (485)
||+|+++.+++|++++..++++++++|||||.++++........... .+.......+ ..+.+...+.+
T Consensus 94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 173 (258)
T PRK01683 94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD 173 (258)
T ss_pred ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence 99999999999999999999999999999999999743221111100 1111111111 24467788999
Q ss_pred HHHhCCCeEE
Q 043471 418 MLKDAGFVDI 427 (485)
Q Consensus 418 ~l~~aGf~~~ 427 (485)
++..+|+.+.
T Consensus 174 ~l~~~g~~v~ 183 (258)
T PRK01683 174 ALAPAACRVD 183 (258)
T ss_pred HHHhCCCcee
Confidence 9999998763
No 28
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.80 E-value=4e-19 Score=168.87 Aligned_cols=139 Identities=13% Similarity=0.216 Sum_probs=111.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
.++.+|||||||+|.++..|++.|.+|+|||+|+++++.|+++... ..+++++++|+++ +++++++||+|+|..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~--l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK--LADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH--hhhccCCCCEEEEhhH
Confidence 4677999999999999999999899999999999999999976532 2379999999987 5567789999999999
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCC-------------ccccCCC-CCCCCChhHHHHHhhhcceecC
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSG-------------DSKRKHN-PTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
++|+++ ...+++++.++|||||.+++++.+..... ....... ...+.+++.+...++++||...
T Consensus 208 LeHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 208 IEHVAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred HHhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 999998 56999999999999999999876532110 0001111 1123478999999999998543
No 29
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.80 E-value=5.4e-19 Score=139.05 Aligned_cols=94 Identities=32% Similarity=0.551 Sum_probs=83.1
Q ss_pred EEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHH
Q 043471 59 LEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKE 137 (485)
Q Consensus 59 LDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~ 137 (485)
||+|||+|..+..|+++ +.+|+|+|+|+++++.++++... .++++.++|+++ +++++++||+|++..+++|+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~--l~~~~~sfD~v~~~~~~~~~~~-- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAED--LPFPDNSFDVVFSNSVLHHLED-- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTS--SSS-TT-EEEEEEESHGGGSSH--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHh--CccccccccccccccceeeccC--
Confidence 89999999999999999 88999999999999999998764 467799999998 6789999999999999999966
Q ss_pred HHHHHHHHHhhcccCcEEEE
Q 043471 138 VEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 138 ~~~~l~~~~~~L~pgG~l~~ 157 (485)
..++++++.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 77999999999999999986
No 30
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.79 E-value=3.9e-18 Score=161.31 Aligned_cols=154 Identities=33% Similarity=0.429 Sum_probs=121.8
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEE
Q 043471 279 LDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYS 355 (485)
Q Consensus 279 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~ 355 (485)
..++++.+|||+|||+|..+..+++..+ .+|+|+|+|+.|++.|+++....+ .++++..+|+.++++++++||+|++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 3567899999999999998887776653 479999999999999999875433 3789999999999888889999999
Q ss_pred cccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH--HHHhcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 356 RDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE--YIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
+.+++|.++...++++++++|||||++++.++......+...... .+........+..++.++|+++||..+.+...
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~ 231 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPK 231 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEec
Confidence 999999999999999999999999999999876544332221111 11111123457889999999999999877543
No 31
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.79 E-value=1.8e-18 Score=154.75 Aligned_cols=139 Identities=22% Similarity=0.267 Sum_probs=105.5
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
+.+++.+...++.+|||+|||+|..+..|+++|.+|+|+|+|++|++.+++.... ..++++.++|+.+. ++ +++|
T Consensus 20 ~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--~~-~~~f 96 (197)
T PRK11207 20 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL--TF-DGEY 96 (197)
T ss_pred HHHHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC--Cc-CCCc
Confidence 4566666666778999999999999999999999999999999999999876543 24688999998874 33 3679
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE-EeccCCCCCccccCCCCCCCCChhHHHHHhh
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF-RESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (485)
|+|+|+.++||+++.....+++++.++|+|||++++ ........ . ....+.+....+.+...++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~--~~~~~~~~~~~~el~~~~~ 161 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-P--CTVGFPFAFKEGELRRYYE 161 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-C--CCCCCCCccCHHHHHHHhC
Confidence 999999999999876788999999999999999655 33322211 1 1112233345666776665
No 32
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.79 E-value=1.6e-19 Score=158.67 Aligned_cols=106 Identities=23% Similarity=0.273 Sum_probs=93.9
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEEhhhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~ 131 (485)
.+|.+|||||||-|.++..+|+.|++|+|+|+|+++++.|+.+....+ ++++.+..+++ +....++||+|+|..+++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed--l~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED--LASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHH--HHhcCCCccEEEEhhHHH
Confidence 578999999999999999999999999999999999999998765433 56788888887 433448999999999999
Q ss_pred ccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 132 YLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
|+++ .+.+++.|.+++||||.+++++++.
T Consensus 136 Hv~d--p~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 136 HVPD--PESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ccCC--HHHHHHHHHHHcCCCcEEEEecccc
Confidence 9999 4589999999999999999998763
No 33
>PRK08317 hypothetical protein; Provisional
Probab=99.79 E-value=5e-18 Score=157.95 Aligned_cols=161 Identities=30% Similarity=0.442 Sum_probs=128.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
...+++.+.+.++.+|||+|||+|.++..+++.+ +.+++|+|+|+.+++.++++......++.+...|+...++++++
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 3456778888899999999999999999999876 36999999999999999988555556899999999988888889
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCC----CCChhH---HHHHHhcCCCCCCHHHHHHHHHhC
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFG----TPSVEF---SEYIKQRGYDLHDVKSYGQMLKDA 422 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~a 422 (485)
||+|++..+++|++++..+++++.++|||||.+++.++..... ...... ...+........+...+.++|+++
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 167 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREA 167 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999987542211 111111 122222223445567899999999
Q ss_pred CCeEEEEeec
Q 043471 423 GFVDIIAEDR 432 (485)
Q Consensus 423 Gf~~~~~~~~ 432 (485)
||+++.++..
T Consensus 168 Gf~~~~~~~~ 177 (241)
T PRK08317 168 GLTDIEVEPY 177 (241)
T ss_pred CCCceeEEEE
Confidence 9998766544
No 34
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.79 E-value=2.6e-18 Score=160.55 Aligned_cols=158 Identities=18% Similarity=0.287 Sum_probs=125.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
.....+++.+...++.+|||+|||+|.++..+++. +.+++++|+|+.|++.|+++.. ...++++|+..+|+++++
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~~~~~~ 103 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCcCCCCc
Confidence 34556777776666789999999999999998876 6899999999999999998753 356889999999988899
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHH-----hcCCCCCCHHHHHHHHHhCCC
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIK-----QRGYDLHDVKSYGQMLKDAGF 424 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~aGf 424 (485)
||+|+++.++++.+++..+++++.++|||||.++++.+..... ..+...+. +....+.+.+++.+++...|+
T Consensus 104 fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~---~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 180 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL---PELHQAWQAVDERPHANRFLPPDAIEQALNGWRY 180 (251)
T ss_pred EEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch---HHHHHHHHHhccCCccccCCCHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999997654321 12222211 223467789999999999998
Q ss_pred eEEEEeecchHH
Q 043471 425 VDIIAEDRTEQF 436 (485)
Q Consensus 425 ~~~~~~~~~~~~ 436 (485)
+. ..+..+..|
T Consensus 181 ~~-~~~~~~~~f 191 (251)
T PRK10258 181 QH-HIQPITLWF 191 (251)
T ss_pred ee-eeeEEEEEC
Confidence 64 444444433
No 35
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.78 E-value=9.6e-19 Score=137.61 Aligned_cols=95 Identities=36% Similarity=0.653 Sum_probs=84.5
Q ss_pred EEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccCCHHH
Q 043471 288 LDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPA 367 (485)
Q Consensus 288 LDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~ 367 (485)
||+|||+|..+..++++.+.+++|+|+++.+++.++++... .++.+..+|+.++|+++++||+|++..+++|++++..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~ 78 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEA 78 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCccccccccccccccceeeccCHHH
Confidence 89999999999999988567999999999999999998763 3566999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEE
Q 043471 368 LFKSFFKWLKPGGTVLI 384 (485)
Q Consensus 368 ~l~~~~~~LkpgG~l~i 384 (485)
+++++.|+|||||+++|
T Consensus 79 ~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 79 ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCeEEeC
Confidence 99999999999999986
No 36
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.78 E-value=1.3e-18 Score=151.68 Aligned_cols=185 Identities=23% Similarity=0.327 Sum_probs=139.0
Q ss_pred hHHHHHHHHhhhcCcCcchhhhhcC-CCcCccChhhhHHHhccCCCC------CCCcEEEEcCCCCcchHHH-HhhcCcE
Q 043471 8 GEREIQKNYWMEHSANLTVEAMMLD-SKASDLDKEERPEVLSLLPPY------EGKTVLEFGAGIGRFTGEL-AKKAGHV 79 (485)
Q Consensus 8 ~~~~~~~~yw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l-~~~~~~v 79 (485)
.-+..++.||++.++ +.+.|+.. ..-+..+-...+.+|..+... ...+.||+|||.|+.+..| .+...+|
T Consensus 4 ~~y~~a~~YW~~v~a--tvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~V 81 (218)
T PF05891_consen 4 IWYEKAKEYWENVPA--TVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEV 81 (218)
T ss_dssp HHHHHHHHHHHTS-S--SHHHHTTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEE
T ss_pred cHHHHHHHHHcCCCC--CccccccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEe
Confidence 346788999998666 67788854 233334445667788877654 3468999999999999866 4557799
Q ss_pred EEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 80 IALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 80 ~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
..+|.++.+++.|++.... ....++.+..+.++ ..+.++||+|++.+++.|++|....++|++|...|+|||.|++
T Consensus 82 DlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f--~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 82 DLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF--TPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp EEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc--cCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 9999999999999988765 23468888888884 3346799999999999999999999999999999999999999
Q ss_pred EeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 158 RESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
.+..........+..+....++.+.++++|+++|+..+.
T Consensus 160 KEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 160 KENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp EEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred EecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEE
Confidence 998876665566777888888999999999999995433
No 37
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.78 E-value=3.4e-18 Score=146.02 Aligned_cols=189 Identities=23% Similarity=0.388 Sum_probs=143.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
+.+..++..+.+.+..+|.|+|||+|..+..|++++ ++.++|+|-|++|++.|++++. +++|..+|+.+.. +..
T Consensus 17 RPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----~~~f~~aDl~~w~-p~~ 91 (257)
T COG4106 17 RPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----DATFEEADLRTWK-PEQ 91 (257)
T ss_pred CcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----CCceecccHhhcC-CCC
Confidence 456789999999989999999999999999999998 7899999999999999998875 7899999999875 467
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh---------HHHHHHhc---CCCCCCHHHHH
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE---------FSEYIKQR---GYDLHDVKSYG 416 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---------~~~~~~~~---~~~~~~~~~~~ 416 (485)
++|+++++.+|++++|..++|.++...|.|||.+.++.+.......... +...+... .....++..+.
T Consensus 92 ~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy 171 (257)
T COG4106 92 PTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYY 171 (257)
T ss_pred ccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHH
Confidence 8999999999999999999999999999999999999665544333221 22222221 23567899999
Q ss_pred HHHHhCCCeEEEEeecchH----------HHH--HHHHHHHHH-HhcHHHHHHHhhhhhh
Q 043471 417 QMLKDAGFVDIIAEDRTEQ----------FVQ--VLQRELDAI-EKDKDAFIKDFSEVFC 463 (485)
Q Consensus 417 ~~l~~aGf~~~~~~~~~~~----------~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ 463 (485)
++|...+-++-..+..=.| |.+ .|+.+++.+ ++.+..|++.|.+...
T Consensus 172 ~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l~ 231 (257)
T COG4106 172 ELLAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALLA 231 (257)
T ss_pred HHhCcccceeeeeeeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHHHH
Confidence 9999998776554432221 111 233344444 5556666666655443
No 38
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.77 E-value=1.1e-17 Score=149.81 Aligned_cols=147 Identities=20% Similarity=0.273 Sum_probs=113.3
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccE
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
.+++.+...++.+|||+|||+|..+..++++ +.+|+|+|+|+.|++.++++....+ .++++...|+.+.+++ ++||+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 98 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDF 98 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCE
Confidence 5556666667789999999999999999988 7899999999999999998775433 3588888999887764 67999
Q ss_pred EEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 353 IYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 353 i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|+++.+++|++ +...+++++.++|||||.+++.........+.. .......+.+++.+.++ ||+++..+
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~-------~~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-------VGFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC-------CCCCCccCHHHHHHHhC--CCeEEEee
Confidence 99999998875 578999999999999999766543322211100 00112357888888887 89988775
Q ss_pred e
Q 043471 431 D 431 (485)
Q Consensus 431 ~ 431 (485)
+
T Consensus 170 ~ 170 (197)
T PRK11207 170 E 170 (197)
T ss_pred C
Confidence 4
No 39
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.77 E-value=3.1e-18 Score=160.12 Aligned_cols=148 Identities=20% Similarity=0.260 Sum_probs=115.6
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~ 120 (485)
..+++.++ .++.+|||+|||+|.++..|++.+.+|+|+|+|++|++.|+++.... ++++++++|+.++. ++++++
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~-~~~~~~ 112 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA-QHLETP 112 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh-hhcCCC
Confidence 45666666 45679999999999999999999999999999999999999876432 47899999998742 245689
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC--------------Cc----cccCCCCCCCCChhH
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS--------------GD----SKRKHNPTHYREPRF 182 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~--------------~~----~~~~~~~~~~~~~~~ 182 (485)
||+|++..+++|+++ ...+++++.++|||||++++...+.... .. ......+.+..+++.
T Consensus 113 fD~V~~~~vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 190 (255)
T PRK11036 113 VDLILFHAVLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQ 190 (255)
T ss_pred CCEEEehhHHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHH
Confidence 999999999999987 4589999999999999999876553210 00 001112334457889
Q ss_pred HHHHhhhcceecC
Q 043471 183 YSKVFKECQIQDA 195 (485)
Q Consensus 183 ~~~~~~~~~~~~~ 195 (485)
+.++++++||...
T Consensus 191 l~~~l~~aGf~~~ 203 (255)
T PRK11036 191 VYQWLEEAGWQIM 203 (255)
T ss_pred HHHHHHHCCCeEe
Confidence 9999999999654
No 40
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.77 E-value=9e-19 Score=154.66 Aligned_cols=144 Identities=26% Similarity=0.367 Sum_probs=112.7
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC---CCC----CeEEEEccCCCCCCCCCCccEEEEc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG---LKC----SVEFEVADCTKKTYPENSFDVIYSR 356 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~---~~~----~i~~~~~d~~~~~~~~~~fD~i~~~ 356 (485)
|++|||+|||+|-++..|++. |+.|+|+|+++.|++.|++.... +.. ++++.+.+++... +.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 578999999999999999976 89999999999999999998542 122 3566667776653 559999999
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCC--ChhHHHH---HHhcC----CCCCCHHHHHHHHHhCCCeEE
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP--SVEFSEY---IKQRG----YDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~~~~~~~---~~~~~----~~~~~~~~~~~~l~~aGf~~~ 427 (485)
++++|+.|++.++..+.++|||||++++++..+.-... .-.+.++ +-|.| ..+.++.++...++++|+++.
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~ 245 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVN 245 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchh
Confidence 99999999999999999999999999999877643211 1111222 22222 246789999999999999887
Q ss_pred EEee
Q 043471 428 IAED 431 (485)
Q Consensus 428 ~~~~ 431 (485)
.+..
T Consensus 246 ~v~G 249 (282)
T KOG1270|consen 246 DVVG 249 (282)
T ss_pred hhhc
Confidence 6644
No 41
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=3.9e-18 Score=155.80 Aligned_cols=117 Identities=17% Similarity=0.221 Sum_probs=104.1
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~ 117 (485)
..+.+++++..++|++|||||||+|.+++++|+. +.+|+|+++|+++.+.+++++... .+++++..|..++.
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---- 135 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---- 135 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----
Confidence 4456788999999999999999999999999998 799999999999999999965432 38999999988843
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+.||.|+|.++++|++..+...+++.+.++|+|||.+++..+...
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 459999999999999998899999999999999999999877644
No 42
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=8.4e-18 Score=150.20 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=104.9
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCee
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D 122 (485)
+.+++.+...++.+|||+|||+|.++.+|+++|.+|+|+|+|+.|++.++++....+ ++++..+|+... ++ +++||
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~--~~-~~~fD 96 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA--AL-NEDYD 96 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc--cc-cCCCC
Confidence 455666666667899999999999999999999999999999999999887653222 477778887653 33 35899
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
+|+++.+++|++.+....++++++++|+|||++++.+...... ........+..+++.+...|..
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~--~~~~~~~~~~~~~~el~~~f~~ 161 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD--YPCHMPFSFTFKEDELRQYYAD 161 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC--CCCCCCcCccCCHHHHHHHhCC
Confidence 9999999999987668899999999999999966643322111 1111112234467777777763
No 43
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.76 E-value=2.2e-17 Score=148.44 Aligned_cols=144 Identities=16% Similarity=0.188 Sum_probs=107.5
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--------------CCCCeEEEE
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--------------HFENVKFMC 106 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--------------~~~~~~~~~ 106 (485)
+....++..+...++.+|||+|||.|+.+.+||++|.+|+|+|+|+.+++.+.+..+ ...++++++
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC 100 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence 344445544444567899999999999999999999999999999999998654322 123689999
Q ss_pred eeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHH
Q 043471 107 ADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKV 186 (485)
Q Consensus 107 ~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (485)
+|+.+++.. ..+.||.|+...+++|++.+.+..+++.+.++|+|||.+++........ ....+.+..+++.+.+.
T Consensus 101 ~D~~~~~~~-~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~----~~~gpp~~~~~~eL~~~ 175 (213)
T TIGR03840 101 GDFFALTAA-DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQS----EMAGPPFSVSPAEVEAL 175 (213)
T ss_pred ccCCCCCcc-cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCC----CCCCcCCCCCHHHHHHH
Confidence 999884321 1357999999999999998889999999999999999866654433211 11223444577778887
Q ss_pred hhh
Q 043471 187 FKE 189 (485)
Q Consensus 187 ~~~ 189 (485)
|..
T Consensus 176 f~~ 178 (213)
T TIGR03840 176 YGG 178 (213)
T ss_pred hcC
Confidence 763
No 44
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.76 E-value=4.3e-18 Score=157.24 Aligned_cols=145 Identities=19% Similarity=0.293 Sum_probs=115.9
Q ss_pred HHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChH
Q 043471 11 EIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDS 87 (485)
Q Consensus 11 ~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~ 87 (485)
+.-+.+|+..+..|...... ........+++.+++.+...++.+|||+|||+|..+..+++. +.+|+|+|+|++
T Consensus 5 ~~~~~~f~~~a~~yd~~~~~---~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~ 81 (231)
T TIGR02752 5 ERVHKVFEKIYKKYDRMNSV---ISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSEN 81 (231)
T ss_pred HHHHHHHHHhhhHHhHHHHH---hcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHH
Confidence 44566677766666542211 223345567788899998888999999999999999999876 358999999999
Q ss_pred HHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 88 VIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 88 ~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+++.|+++... .++++++++|+.. +++++++||+|++..+++|+++ ..++++++.++|+|||.+++.+...
T Consensus 82 ~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 82 MLSVGRQKVKDAGLHNVELVHGNAME--LPFDDNSFDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred HHHHHHHHHHhcCCCceEEEEechhc--CCCCCCCccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCC
Confidence 99999987532 3479999999987 5567889999999999999988 5689999999999999999876543
No 45
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.76 E-value=6.7e-18 Score=146.87 Aligned_cols=140 Identities=22% Similarity=0.284 Sum_probs=100.2
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeE
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
.+++.+...++.++||+|||.|+.+++||++|.+|+++|+|+..++.+++.....+ .++..+.|+.+.. + ++.||+
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~--~-~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD--F-PEEYDF 97 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS----TTTEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc--c-cCCcCE
Confidence 34445555667899999999999999999999999999999999998777653322 5999999998844 3 368999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
|++..+++|+..+.++++++.+...++|||++++....... .......+.+...++.++.++..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~--d~p~~~~~~f~~~~~EL~~~y~d 161 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETP--DYPCPSPFPFLLKPGELREYYAD 161 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--S--SS--SS--S--B-TTHHHHHTTT
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccC--CCCCCCCCCcccCHHHHHHHhCC
Confidence 99999999999888999999999999999998885433221 11222233444466777777764
No 46
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.76 E-value=2.1e-17 Score=153.50 Aligned_cols=145 Identities=19% Similarity=0.326 Sum_probs=111.3
Q ss_pred CCCCCEEEEECCCCChhHHHHhhc---CCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCCCCccEEEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADK---FDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPENSFDVIYS 355 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~i~~ 355 (485)
+.++.+|||+|||+|..+..+++. .+.+++|+|+|+.|++.|++++... ..+++++++|+.+.+++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 457789999999999999888873 2679999999999999999998643 34799999999988754 5999999
Q ss_pred cccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh-----HHHHHHh----------------cCCCCCCH
Q 043471 356 RDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE-----FSEYIKQ----------------RGYDLHDV 412 (485)
Q Consensus 356 ~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----~~~~~~~----------------~~~~~~~~ 412 (485)
+.+++|++ ++..++++++++|||||.+++.+........... +..+... ......+.
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 99999995 3568999999999999999999855433221111 1111100 11234578
Q ss_pred HHHHHHHHhCCCeEE
Q 043471 413 KSYGQMLKDAGFVDI 427 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~ 427 (485)
++..++|+++||+.+
T Consensus 212 ~~~~~~L~~aGF~~v 226 (247)
T PRK15451 212 ETHKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHHHcCchhH
Confidence 899999999999754
No 47
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=2.2e-17 Score=147.49 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=114.1
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
..+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.++++....+.++.+...|+...+++ ++||+
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 97 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDF 97 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCE
Confidence 45556666556679999999999999999987 78999999999999999887754444577778888766654 67999
Q ss_pred EEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 353 IYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 353 i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|+++.+++|++ +...++++++++|||||++++.++......+... + .....+.+++.+++. +|+++...
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~------~-~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHM------P-FSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCC------C-cCccCCHHHHHHHhC--CCeEEEee
Confidence 99999999884 5678999999999999997766544332211110 1 112467899999886 59998876
Q ss_pred ecc
Q 043471 431 DRT 433 (485)
Q Consensus 431 ~~~ 433 (485)
...
T Consensus 169 e~~ 171 (195)
T TIGR00477 169 EAV 171 (195)
T ss_pred ccc
Confidence 543
No 48
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.76 E-value=5.4e-17 Score=150.85 Aligned_cols=163 Identities=27% Similarity=0.479 Sum_probs=128.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYP 346 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~ 346 (485)
....++..+...++.+|||+|||+|.++..+++..+ .+++++|+++.+++.+++++.. ...++.+..+|+.+.+++
T Consensus 39 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 39 WRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 345566667667788999999999999999998863 7999999999999999998754 345789999999988877
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHH----------------------HHh
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY----------------------IKQ 404 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~----------------------~~~ 404 (485)
.++||+|++..++++..++..+++++.++|+|||.+++.+............... ..+
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAE 198 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHH
Confidence 7899999999999999999999999999999999999887654332211110000 000
Q ss_pred cCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 405 RGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 405 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
....+++.+++.++|+++||+++.+....
T Consensus 199 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 227 (239)
T PRK00216 199 SIRAFPDQEELAAMLEEAGFERVRYRNLT 227 (239)
T ss_pred HHHhCCCHHHHHHHHHhCCCceeeeeeee
Confidence 01235678899999999999998887644
No 49
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.75 E-value=9.8e-18 Score=156.88 Aligned_cols=140 Identities=19% Similarity=0.265 Sum_probs=110.9
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
..+++.+...++.+|||||||+|.++..++++ +.+|+|+|+|+.|++.|+++ +++++++|+.+ ++ ++++|
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~--~~-~~~~f 90 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRD--WK-PKPDT 90 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhh--CC-CCCCc
Confidence 56788888888899999999999999999988 67999999999999999873 68899999987 43 56799
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCc------------ccc------CCCCCCCCChhHH
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD------------SKR------KHNPTHYREPRFY 183 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------------~~~------~~~~~~~~~~~~~ 183 (485)
|+|+|+.++||+++ ..+++++++++|||||.+++..+....... ... ........+++.+
T Consensus 91 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 168 (255)
T PRK14103 91 DVVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGY 168 (255)
T ss_pred eEEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHH
Confidence 99999999999987 569999999999999999996432111000 000 0011233478889
Q ss_pred HHHhhhccee
Q 043471 184 SKVFKECQIQ 193 (485)
Q Consensus 184 ~~~~~~~~~~ 193 (485)
...++++||.
T Consensus 169 ~~~l~~aGf~ 178 (255)
T PRK14103 169 AELLTDAGCK 178 (255)
T ss_pred HHHHHhCCCe
Confidence 9999999985
No 50
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.75 E-value=7.6e-18 Score=136.93 Aligned_cols=103 Identities=26% Similarity=0.468 Sum_probs=86.7
Q ss_pred CCCcEEEEcCCCCcchHHHHh--hcCcEEEEeCChHHHHHHHHHc---CCCCCeEEEEeec-cCCCCCCCCCCeeEEEhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAK--KAGHVIALDFIDSVIKKNEEVN---GHFENVKFMCADV-TSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~giD~s~~~~~~a~~~~---~~~~~~~~~~~d~-~~~~~~~~~~~~D~v~~~ 127 (485)
++.+|||||||+|.++..+++ .+.+|+|+|+|+++++.|+++. ...++++++++|+ .... ..+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD---FLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT---TSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc---cCCCCCEEEEC
Confidence 578999999999999999999 5889999999999999999987 3446999999999 3322 24579999999
Q ss_pred h-hhhccC-hHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 128 W-LLMYLS-DKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 128 ~-~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+ +++++. .++..++++++.+.|+|||++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 555443 3457899999999999999999964
No 51
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.75 E-value=6.2e-18 Score=158.03 Aligned_cols=118 Identities=19% Similarity=0.392 Sum_probs=102.7
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
++......+++.++..++.+|||+|||+|.++..|++.+.+|+|+|+|+.|++.|+++.. ...++++|++. ++++
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~--~~~~ 100 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA---ADHYLAGDIES--LPLA 100 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCCEEEcCccc--CcCC
Confidence 455666777888877677899999999999999999889999999999999999998753 45789999988 6677
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+++||+|+++.+++|+++ ...++.++.++|+|||.++++....
T Consensus 101 ~~~fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCcEEEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 889999999999999988 6699999999999999999986653
No 52
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.75 E-value=1.1e-17 Score=158.28 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=111.9
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHH---HcCCCCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEE---VNGHFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~---~~~~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..++..+...++++|||||||+|.++..++..|+ .|+|+|+|+.|+..++. ......++.+..+++.+ ++. .+
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~--lp~-~~ 187 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ--LHE-LY 187 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH--CCC-CC
Confidence 3566777778899999999999999999988876 69999999999876433 22333578889999887 443 35
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc--------ccCCCCCCCCChhHHHHHhhhcc
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS--------KRKHNPTHYREPRFYSKVFKECQ 191 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 191 (485)
+||+|+|+++++|.++ ...++++++++|+|||.+++.+......... .+....+...+...+..+++++|
T Consensus 188 ~FD~V~s~gvL~H~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aG 265 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVG 265 (314)
T ss_pred CcCEEEEcchhhccCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCC
Confidence 8999999999999988 5689999999999999999976543321110 01112234447788999999999
Q ss_pred eecC
Q 043471 192 IQDA 195 (485)
Q Consensus 192 ~~~~ 195 (485)
|+.+
T Consensus 266 F~~V 269 (314)
T TIGR00452 266 FENF 269 (314)
T ss_pred CeEE
Confidence 9654
No 53
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.75 E-value=1.3e-17 Score=159.82 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=113.0
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHH---cCCCCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEV---NGHFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~---~~~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..++..++..++.+|||||||+|.++..+++.|. .|+|+|+|+.++..++.. .....++.++.+|+++ +++ ++
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~--lp~-~~ 188 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ--LPA-LK 188 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH--CCC-cC
Confidence 4556677777889999999999999999999876 599999999998765432 2223589999999988 555 68
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc----c----cCCCCCCCCChhHHHHHhhhcc
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS----K----RKHNPTHYREPRFYSKVFKECQ 191 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~ 191 (485)
+||+|+|.++++|..+ ...+++++++.|+|||.+++.+......... . .........+.+.+..+++++|
T Consensus 189 ~FD~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG 266 (322)
T PRK15068 189 AFDTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAG 266 (322)
T ss_pred CcCEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcC
Confidence 9999999999999987 5689999999999999999976543322110 0 1111223447788999999999
Q ss_pred eecC
Q 043471 192 IQDA 195 (485)
Q Consensus 192 ~~~~ 195 (485)
|+.+
T Consensus 267 F~~i 270 (322)
T PRK15068 267 FKDV 270 (322)
T ss_pred CceE
Confidence 9654
No 54
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.75 E-value=6.2e-18 Score=157.56 Aligned_cols=117 Identities=17% Similarity=0.208 Sum_probs=93.6
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~ 117 (485)
....+++.+..++|.+|||||||.|.++.+++++ |++|+|+.+|++.++.+++++... .++++..+|..+++
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---- 125 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---- 125 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC----
Confidence 3456789999999999999999999999999998 999999999999999999876543 37999999998733
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.+||.|+|..+++|++.++++.+++++.++|+|||.+++..++..
T Consensus 126 -~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 126 -GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred -CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 499999999999999887799999999999999999999766643
No 55
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.74 E-value=1.3e-16 Score=146.67 Aligned_cols=162 Identities=27% Similarity=0.435 Sum_probs=126.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
...+++.+...++.+|||+|||+|.++..+++... .+++++|+++.+++.++++.. ...++.+..+|+.+.+++.++
T Consensus 28 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 28 RRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCCc
Confidence 34566666666888999999999999999998864 599999999999999999875 445789999999998877789
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH----HH------------------HHHhcCC
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF----SE------------------YIKQRGY 407 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~----~~------------------~~~~~~~ 407 (485)
||+|++..+++|.+++..+++++.++|+|||++++.+............ .. +......
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIR 186 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHH
Confidence 9999999999999999999999999999999999987654332111100 00 0000011
Q ss_pred CCCCHHHHHHHHHhCCCeEEEEeecch
Q 043471 408 DLHDVKSYGQMLKDAGFVDIIAEDRTE 434 (485)
Q Consensus 408 ~~~~~~~~~~~l~~aGf~~~~~~~~~~ 434 (485)
.+.+..+|.++|+++||+++.++....
T Consensus 187 ~~~~~~~~~~~l~~aGf~~~~~~~~~~ 213 (223)
T TIGR01934 187 AFPSQEELAAMLKEAGFEEVRYRSLTF 213 (223)
T ss_pred hCCCHHHHHHHHHHcCCccceeeeeec
Confidence 345788999999999999988766543
No 56
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.74 E-value=9.4e-18 Score=145.89 Aligned_cols=132 Identities=27% Similarity=0.409 Sum_probs=103.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~ 131 (485)
..++.+|||||||+|.++..+++.+.+|+|+|+|+.+++. .++.....+... .+.++++||+|+|+.+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQD--PPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------TTSEEEEEECHT--HHCHSSSEEEEEEESSGG
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhh--hhccccchhhHhhHHHHh
Confidence 5678899999999999999998889999999999999988 234455544443 445678999999999999
Q ss_pred ccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC-------CccccC-CCCCCCCChhHHHHHhhhcceecC
Q 043471 132 YLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS-------GDSKRK-HNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
|+++ ...+++++.++|||||+++++++..... ...... .....+.+.+.++.+++++||...
T Consensus 90 ~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 90 HLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp GSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred hccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 9998 6799999999999999999998865310 001111 123345588999999999999653
No 57
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.74 E-value=1.8e-17 Score=145.33 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=110.1
Q ss_pred hcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--c------CcEEEEeCChHHHHHHHHHcCC---
Q 043471 30 MLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--A------GHVIALDFIDSVIKKNEEVNGH--- 98 (485)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~------~~v~giD~s~~~~~~a~~~~~~--- 98 (485)
|+|...-..+.-|...+...+.+.++.++||++||||.++..+.+. . .+|+.+|+||+|++.++++...
T Consensus 76 mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l 155 (296)
T KOG1540|consen 76 MNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL 155 (296)
T ss_pred HHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC
Confidence 4444555566667778889999999999999999999999888875 2 5899999999999999998732
Q ss_pred C--CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 99 F--ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 99 ~--~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
. +.+.++.+|+++ +||++++||..++.+.+..+++ +++.+++++|+|||||++.+.+..
T Consensus 156 ~~~~~~~w~~~dAE~--LpFdd~s~D~yTiafGIRN~th--~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 156 KASSRVEWVEGDAED--LPFDDDSFDAYTIAFGIRNVTH--IQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred CcCCceEEEeCCccc--CCCCCCcceeEEEecceecCCC--HHHHHHHHHHhcCCCcEEEEEEcc
Confidence 1 259999999999 8899999999999999999999 779999999999999999887664
No 58
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.74 E-value=5e-17 Score=150.64 Aligned_cols=145 Identities=19% Similarity=0.347 Sum_probs=112.9
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCCCCccEEEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPENSFDVIYS 355 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~i~~ 355 (485)
..++.+|||+|||+|..+..+++++ +++++|+|+|+.|++.|++++... ..+++++++|+.+.+++ .+|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 3577899999999999999998863 679999999999999999987643 34789999999988764 5899999
Q ss_pred cccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh-HH----HHHHh----------------cCCCCCCH
Q 043471 356 RDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE-FS----EYIKQ----------------RGYDLHDV 412 (485)
Q Consensus 356 ~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~----~~~~~----------------~~~~~~~~ 412 (485)
..+++|++ ++..++++++++|||||.+++.+........... +. .+... ......+.
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 99999985 4678999999999999999999865433221111 10 01000 12246789
Q ss_pred HHHHHHHHhCCCeEE
Q 043471 413 KSYGQMLKDAGFVDI 427 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~ 427 (485)
+++.++|+++||+.+
T Consensus 209 ~~~~~~l~~aGF~~~ 223 (239)
T TIGR00740 209 ETHKARLKNVGFSHV 223 (239)
T ss_pred HHHHHHHHHcCCchH
Confidence 999999999999854
No 59
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.74 E-value=1.3e-17 Score=142.67 Aligned_cols=137 Identities=23% Similarity=0.356 Sum_probs=102.8
Q ss_pred HHHhc-cCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCee
Q 043471 44 PEVLS-LLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 44 ~~~~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
..++. .++...-.++||+|||+|.++..|+.+...++++|+|+.+++.|+++....++|+++++|+... .|.++||
T Consensus 32 ~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~---~P~~~FD 108 (201)
T PF05401_consen 32 RATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF---WPEGRFD 108 (201)
T ss_dssp HHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT------SS-EE
T ss_pred HHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC---CCCCCee
Confidence 34554 5777777899999999999999999999999999999999999999999888999999999764 3679999
Q ss_pred EEEhhhhhhccCh-HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 123 MMFSNWLLMYLSD-KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 123 ~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
+|+++.+++|+.+ ++...++..+...|+|||.+++.+.... .-...+ +....+.+..+|.+
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-----~c~~wg-h~~ga~tv~~~~~~ 170 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-----NCRRWG-HAAGAETVLEMLQE 170 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-----HHHHTT--S--HHHHHHHHHH
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-----cccccC-cccchHHHHHHHHH
Confidence 9999999999975 5688999999999999999999765311 111111 22266777777765
No 60
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.73 E-value=3.2e-17 Score=167.57 Aligned_cols=150 Identities=25% Similarity=0.385 Sum_probs=119.5
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~ 119 (485)
..+.+++.+...++.+|||||||+|..+..|++. +.+|+|+|+|+++++.|+++.... .+++|+++|+.. .+++++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~--~~~~~~ 331 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTK--KTYPDN 331 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc--CCCCCC
Confidence 4566777777777889999999999999999886 789999999999999998875432 379999999987 556778
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc-----CCCCCCCCChhHHHHHhhhcceec
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR-----KHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
+||+|+|..+++|+++ ...++++++++|+|||.+++.++.......... ........+.+.+.+.++++||..
T Consensus 332 ~fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~ 409 (475)
T PLN02336 332 SFDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDD 409 (475)
T ss_pred CEEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCee
Confidence 9999999999999998 569999999999999999998876432211110 011233457788999999999855
Q ss_pred C
Q 043471 195 A 195 (485)
Q Consensus 195 ~ 195 (485)
.
T Consensus 410 i 410 (475)
T PLN02336 410 V 410 (475)
T ss_pred e
Confidence 3
No 61
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.73 E-value=1.3e-16 Score=143.96 Aligned_cols=140 Identities=15% Similarity=0.154 Sum_probs=104.5
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--------------CCCeEEEEeecc
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--------------FENVKFMCADVT 110 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--------------~~~~~~~~~d~~ 110 (485)
..+..+...++.+|||+|||.|..+.+||++|++|+|+|+|+.+++.+.+..+. ..++++.++|+.
T Consensus 28 ~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 28 KYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred HHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECccc
Confidence 333334445678999999999999999999999999999999999987543221 247899999998
Q ss_pred CCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 111 SPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 111 ~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
++.. ...+.||.|+...+++|++.+.+.++++.+.++|+|||++++........ ....|.+..+++.+.+.++.
T Consensus 108 ~l~~-~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~----~~~gPp~~~~~~el~~~~~~ 181 (218)
T PRK13255 108 ALTA-ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQE----ELAGPPFSVSDEEVEALYAG 181 (218)
T ss_pred CCCc-ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCc----cCCCCCCCCCHHHHHHHhcC
Confidence 8431 12368999999999999998889999999999999999755432222211 11223345577888888864
No 62
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.73 E-value=5.3e-16 Score=163.99 Aligned_cols=138 Identities=20% Similarity=0.231 Sum_probs=100.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcC--CC-CCeEEEEccCCCCC-C
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIG--LK-CSVEFEVADCTKKT-Y 345 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~--~~-~~i~~~~~d~~~~~-~ 345 (485)
..+.++..+ .++.+|||+|||+|.++..++.. |+ +|+++|+|+.+++.|++++.. +. .+++++++|+.+.. -
T Consensus 528 ~~R~~~~~~--~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~ 604 (702)
T PRK11783 528 PTRRMIGQM--AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE 604 (702)
T ss_pred HHHHHHHHh--cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH
Confidence 344455544 24789999999999999999987 54 799999999999999999863 33 46899999976531 1
Q ss_pred CCCCccEEEEcccc-----------cccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHH
Q 043471 346 PENSFDVIYSRDTI-----------LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKS 414 (485)
Q Consensus 346 ~~~~fD~i~~~~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (485)
..++||+|++.... ....+...++..+.++|+|||.++++.... ..+ .
T Consensus 605 ~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-------------------~~~--~ 663 (702)
T PRK11783 605 AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-------------------GFK--M 663 (702)
T ss_pred cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-------------------cCC--h
Confidence 14689999996432 112345678899999999999998874211 011 1
Q ss_pred HHHHHHhCCCeEEEEeec
Q 043471 415 YGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 415 ~~~~l~~aGf~~~~~~~~ 432 (485)
..+.+.++|+.+..++..
T Consensus 664 ~~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 664 DEEGLAKLGLKAEEITAK 681 (702)
T ss_pred hHHHHHhCCCeEEEEecC
Confidence 267788899988777643
No 63
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.73 E-value=1.6e-17 Score=134.96 Aligned_cols=103 Identities=32% Similarity=0.595 Sum_probs=87.7
Q ss_pred CCCEEEEECCCCChhHHHHhhc-CCCEEEEEeCCHHHHHHHHHHh--cCCCCCeEEEEccC-CCCCCCCCCccEEEEcc-
Q 043471 283 PGQKVLDVGCGIGGGDFYMADK-FDVHVVGIDLSINMISFALERA--IGLKCSVEFEVADC-TKKTYPENSFDVIYSRD- 357 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~--~~~~~~i~~~~~d~-~~~~~~~~~fD~i~~~~- 357 (485)
|+.+|||||||+|.++..+++. .+.+++|+|+|+.+++.|+++. .+...+++++++|+ ..... .++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 5789999999999999999994 3889999999999999999998 45667999999999 33333 46799999999
Q ss_pred ccccc---CCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 358 TILHI---QDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 358 ~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+++++ ++..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55544 456889999999999999999975
No 64
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.73 E-value=2.4e-17 Score=157.08 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=116.6
Q ss_pred cChhhhHHHhccCCC-CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC
Q 043471 38 LDKEERPEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL 114 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~ 114 (485)
+....+..+++.+.. .++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|+++.. ..+++++.+|+.+ +
T Consensus 96 ~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~--l 172 (340)
T PLN02490 96 WTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAED--L 172 (340)
T ss_pred chHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHh--C
Confidence 445566667776654 35789999999999999988876 4689999999999999998754 2578999999988 6
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccC-CCC-CCCCChhHHHHHhhhcce
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRK-HNP-THYREPRFYSKVFKECQI 192 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 192 (485)
++++++||+|+++.+++|+++ ....+++++++|+|||.+++.+..... ....+. ... ....+.+.+.++++++||
T Consensus 173 p~~~~sFDvVIs~~~L~~~~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~-~~~~r~~~~~~~~~~t~eEl~~lL~~aGF 249 (340)
T PLN02490 173 PFPTDYADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACLIGPVHPT-FWLSRFFADVWMLFPKEEEYIEWFTKAGF 249 (340)
T ss_pred CCCCCceeEEEEcChhhhCCC--HHHHHHHHHHhcCCCcEEEEEEecCcc-hhHHHHhhhhhccCCCHHHHHHHHHHCCC
Confidence 677889999999999999988 458999999999999999886543211 111110 000 112467889999999999
Q ss_pred ecCC
Q 043471 193 QDAS 196 (485)
Q Consensus 193 ~~~~ 196 (485)
....
T Consensus 250 ~~V~ 253 (340)
T PLN02490 250 KDVK 253 (340)
T ss_pred eEEE
Confidence 6543
No 65
>PRK05785 hypothetical protein; Provisional
Probab=99.73 E-value=7.7e-17 Score=147.06 Aligned_cols=90 Identities=23% Similarity=0.329 Sum_probs=82.1
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI 362 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 362 (485)
++.+|||+|||||.++..+++..+.+|+|+|+|++|++.|+++. .++++|++++|+++++||+|++..+++|+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 46799999999999999999876579999999999999998752 35789999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCC
Q 043471 363 QDKPALFKSFFKWLKPG 379 (485)
Q Consensus 363 ~~~~~~l~~~~~~Lkpg 379 (485)
+|+++++++++|+|||.
T Consensus 124 ~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 124 DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCHHHHHHHHHHHhcCc
Confidence 99999999999999994
No 66
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.73 E-value=7.4e-18 Score=148.91 Aligned_cols=101 Identities=20% Similarity=0.293 Sum_probs=87.9
Q ss_pred CCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC--------CeEEEEeeccCCCCCCCCCCeeEEEh
Q 043471 55 GKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE--------NVKFMCADVTSPDLTFSEDSVDMMFS 126 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~~~~~~~d~~~~~~~~~~~~~D~v~~ 126 (485)
|.+|||+|||+|.++..||+.|++|+|||++++|++.|++.....| ++++...+++... +.||+|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-----~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-----GKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-----cccceeee
Confidence 5789999999999999999999999999999999999999844322 3667777777632 56999999
Q ss_pred hhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 127 NWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+.+++|+.+ .+.++..+.+.|||||.+++++.+.
T Consensus 165 sevleHV~d--p~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 165 SEVLEHVKD--PQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHHhC--HHHHHHHHHHHhCCCCceEeeehhh
Confidence 999999998 6699999999999999999987653
No 67
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.72 E-value=3.4e-17 Score=140.65 Aligned_cols=106 Identities=34% Similarity=0.599 Sum_probs=93.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCCCccEEEEc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPENSFDVIYSR 356 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~~fD~i~~~ 356 (485)
+++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|++++...+ .++++.++|+.+++ ++ ++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 457899999999999999999543 6799999999999999999876333 27999999999976 55 789999999
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.+++|+.++..+++++.++|+|||.+++.+..
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999999776
No 68
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.72 E-value=2.1e-16 Score=146.91 Aligned_cols=142 Identities=25% Similarity=0.373 Sum_probs=116.8
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
..+.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++.. .++.++.+|+.+.++++++||+|++..+++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 334799999999999999999875 4679999999999999998764 378899999999988889999999999999
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|+.++..+++++.++|+|||.+++..+.... ...+.......+..+.+.+++.++++++ |..+.+.
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGPGT---LHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCccC---HHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 9999999999999999999999998654432 1222222332445678899999999998 8876554
No 69
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.72 E-value=3.8e-17 Score=140.38 Aligned_cols=106 Identities=25% Similarity=0.492 Sum_probs=90.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
.++.+|||+|||+|.++..|++. +.+|+|+|+|++|++.|+++.. ..++++|+++|+.+++..++ ++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 45789999999999999999953 6799999999999999999643 33489999999998431134 899999999
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.+++|+++ ...+++++.++|+|||.+++.+..
T Consensus 81 ~~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD--PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999998 569999999999999999998775
No 70
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.71 E-value=1.2e-16 Score=143.04 Aligned_cols=101 Identities=16% Similarity=0.308 Sum_probs=87.9
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
.++.+|||||||+|..+..|++. +.+|+|+|+|++|++.|+++. +++.+.++|+.+ ++++++||+|+++.++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~---~~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD---PFKDNFFDLVLTKGVL 115 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC---CCCCCCEEEEEECChh
Confidence 35678999999999999999887 679999999999999999865 467888999875 4578899999999999
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+|++++...++++++.+++ ++++++.+..
T Consensus 116 ~hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 116 IHINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred hhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 9998777889999999998 5788887764
No 71
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.71 E-value=2e-17 Score=131.49 Aligned_cols=94 Identities=31% Similarity=0.527 Sum_probs=81.0
Q ss_pred EEEEcCCCCcchHHHHhhc-----CcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEhh-hhh
Q 043471 58 VLEFGAGIGRFTGELAKKA-----GHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFSN-WLL 130 (485)
Q Consensus 58 vLDiGcG~G~~~~~l~~~~-----~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~-~~~ 130 (485)
|||+|||+|..+..+++.. .+++|+|+|++|++.++++.... .+++++++|+.+ +++.+++||+|+++ .++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~--l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD--LPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC--HHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH--CcccCCCeeEEEEcCCcc
Confidence 7999999999999999874 79999999999999999986432 389999999988 66778899999995 559
Q ss_pred hccChHHHHHHHHHHHhhcccCc
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGG 153 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG 153 (485)
+|++++...++++++.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999889999999999999998
No 72
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.70 E-value=1.6e-16 Score=151.00 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=102.9
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEEh
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFS 126 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~~ 126 (485)
..+...++.+|||+|||+|..+.+|+++|.+|+|+|+|+.+++.++++....+ ++++...|+.... + +++||+|++
T Consensus 114 ~~~~~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~--~-~~~fD~I~~ 190 (287)
T PRK12335 114 EAVQTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS--I-QEEYDFILS 190 (287)
T ss_pred HHhhccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc--c-cCCccEEEE
Confidence 33333455699999999999999999999999999999999999988754322 7888888887643 2 578999999
Q ss_pred hhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 127 NWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
+.+++|++.+....+++++.++|+|||++++......... .......+...++.++++++.
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~--~~~~p~~~~~~~~el~~~~~~ 251 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY--PCPMPFSFTFKEGELKDYYQD 251 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC--CCCCCCCcccCHHHHHHHhCC
Confidence 9999999877788999999999999999766432211111 011111333467777777764
No 73
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.70 E-value=3.3e-16 Score=148.78 Aligned_cols=140 Identities=19% Similarity=0.262 Sum_probs=109.8
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI 362 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 362 (485)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++....+.++++...|+...++ +++||+|+++.+++|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 3459999999999999999987 7899999999999999998877555578888889877655 6789999999999998
Q ss_pred C--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 363 Q--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 363 ~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
+ +...+++++.++|+|||++++.........+.. .+ .....+..++.+.++. |+++...+..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~------~p-~~~~~~~~el~~~~~~--~~i~~~~e~~ 261 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP------MP-FSFTFKEGELKDYYQD--WEIVKYNENV 261 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC------CC-CCcccCHHHHHHHhCC--CEEEEEeccc
Confidence 5 678899999999999999777644332221110 01 1134678899998865 9998875433
No 74
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.70 E-value=1.6e-16 Score=147.50 Aligned_cols=105 Identities=20% Similarity=0.359 Sum_probs=90.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
.++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|+++... ..+++++++|+.+ +++ +.+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~--~~~--~~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD--IAI--ENASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh--CCC--CCCCEEe
Confidence 46789999999999999888873 57999999999999999998643 2379999999987 433 3599999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++.+++|+++.....++++++++|+|||.+++.+..
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999999998776789999999999999999998754
No 75
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.69 E-value=2.9e-16 Score=133.16 Aligned_cols=146 Identities=22% Similarity=0.248 Sum_probs=111.1
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC-CCCeE-EEEccCCCCC-CCCCCccEEEEcccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL-KCSVE-FEVADCTKKT-YPENSFDVIYSRDTI 359 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~i~-~~~~d~~~~~-~~~~~fD~i~~~~~~ 359 (485)
....|||+|||||..-.++-..-+++|+++|+++.|-+.+.+.++.. ..++. |++++.+++| ++++++|.|++..++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 34478999999998776665444789999999999999998887643 35677 9999999998 889999999999999
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh-hHHHHHHh------cCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV-EFSEYIKQ------RGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
+.+.|+.+.|+++.|+|||||++++.+....+-..-. -++....+ .| ...+. +..+.|+++-|+.+...
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dG-C~ltr-d~~e~Leda~f~~~~~k 231 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDG-CVLTR-DTGELLEDAEFSIDSCK 231 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccc-eEEeh-hHHHHhhhcccccchhh
Confidence 9999999999999999999999999987665432211 11222222 11 11233 45578888888876543
No 76
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.69 E-value=1.4e-16 Score=147.60 Aligned_cols=106 Identities=16% Similarity=0.275 Sum_probs=90.9
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
.++.+|||||||+|..+..++++ +.+|+|+|+|++|++.|+++... ..+++++++|+.+. ++ ..+|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~--~~--~~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV--EI--KNASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC--CC--CCCCEEe
Confidence 46779999999999999999875 56899999999999999987543 23689999999884 33 3589999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
++.+++|+++++...++++++++|+|||.+++++...
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 9999999987778899999999999999999987643
No 77
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.69 E-value=3.1e-16 Score=144.05 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=106.1
Q ss_pred CcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 56 KTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 56 ~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
.+|||||||+|..+..+++. +.+|+|+|+|+++++.++++... .++++++.+|+... ++ .++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~-~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PF-PDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CC-CCCCCEeehHHHH
Confidence 37999999999999999987 36899999999999999987543 24789999998763 33 3589999999999
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
+|+++ ...+++++.++|+|||++++.++...............+..+...|.+.++++||...
T Consensus 78 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 78 HHIKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred HhCCC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 99987 6799999999999999999987753221111112223335577889999999998553
No 78
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.69 E-value=3.2e-16 Score=143.28 Aligned_cols=162 Identities=22% Similarity=0.287 Sum_probs=119.2
Q ss_pred HHHHHHHcC--CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCCC
Q 043471 272 TKEFVAKLD--LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYPE 347 (485)
Q Consensus 272 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~~ 347 (485)
...+++.+. ..++.+|||+|||+|.++..+++. +.+++|+|+|+.|++.|++++.... .++.+.++|+...+
T Consensus 42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 117 (219)
T TIGR02021 42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--- 117 (219)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---
Confidence 344555554 456889999999999999999987 6799999999999999999886433 47899999998765
Q ss_pred CCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCC-ChhHHHHHHh----cCCCCCCHHHHHHHHH
Q 043471 348 NSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQ----RGYDLHDVKSYGQMLK 420 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~l~ 420 (485)
++||+|++..+++|++ +...+++++.+++++++.+.+.... .... ...+...+.. ....+++.+++.++++
T Consensus 118 ~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 195 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT--AWLAFLKMIGELFPGSSRATSAYLHPMTDLERALG 195 (219)
T ss_pred CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc--hHHHHHHHHHhhCcCcccccceEEecHHHHHHHHH
Confidence 7899999999999885 4678899999999877666553211 0000 0011111110 1123468899999999
Q ss_pred hCCCeEEEEeecchHHHHH
Q 043471 421 DAGFVDIIAEDRTEQFVQV 439 (485)
Q Consensus 421 ~aGf~~~~~~~~~~~~~~~ 439 (485)
++||+++..+.....+...
T Consensus 196 ~~Gf~v~~~~~~~~~~~~~ 214 (219)
T TIGR02021 196 ELGWKIVREGLVSTGFYNS 214 (219)
T ss_pred HcCceeeeeecccccchhh
Confidence 9999999988776665544
No 79
>PRK05785 hypothetical protein; Provisional
Probab=99.69 E-value=1.5e-16 Score=145.23 Aligned_cols=130 Identities=19% Similarity=0.269 Sum_probs=99.6
Q ss_pred HHHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCC--CCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCCh
Q 043471 10 REIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPP--YEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFID 86 (485)
Q Consensus 10 ~~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~ 86 (485)
.+.-++.|++.+..|.....+. ....+..+++.+++.+.. .++.+|||||||||.++..+++. +.+|+|+|+|+
T Consensus 8 ~~~v~~~f~~iA~~YD~~n~~~---s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~ 84 (226)
T PRK05785 8 WEELQEAYNKIPKAYDRANRFI---SFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE 84 (226)
T ss_pred HHHHHHHHHhhhHHHHHhhhhc---cCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH
Confidence 3445667888777766433221 112233445555544321 23779999999999999999988 68999999999
Q ss_pred HHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccC
Q 043471 87 SVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVG 152 (485)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg 152 (485)
+|++.|+++. .++++|++. +|+++++||+|+++.+++|+++ .++++++++|+|||.
T Consensus 85 ~Ml~~a~~~~------~~~~~d~~~--lp~~d~sfD~v~~~~~l~~~~d--~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 85 NMLKMNLVAD------DKVVGSFEA--LPFRDKSFDVVMSSFALHASDN--IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHhcc------ceEEechhh--CCCCCCCEEEEEecChhhccCC--HHHHHHHHHHHhcCc
Confidence 9999998752 467899988 7788999999999999999988 669999999999994
No 80
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.68 E-value=1.7e-15 Score=145.71 Aligned_cols=155 Identities=23% Similarity=0.353 Sum_probs=119.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~ 348 (485)
...+++.+.++++.+|||||||+|.++..+++++ +.+++++|. +.+++.+++++. ++..+++++.+|+.+.+++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-- 214 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-- 214 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--
Confidence 4456677778888999999999999999999987 579999997 789999988876 3456799999999876654
Q ss_pred CccEEEEcccccccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCC--hhHHHHHHhcC-----CCCCCHHHHHHHH
Q 043471 349 SFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPS--VEFSEYIKQRG-----YDLHDVKSYGQML 419 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~l 419 (485)
.+|+|++..++|+.++ ...++++++++|+|||++++.+......... ..+..+....+ ....+.+++.++|
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll 294 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEIL 294 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHH
Confidence 3799999999988854 3578999999999999999998755433211 11222222111 1234578999999
Q ss_pred HhCCCeEEEE
Q 043471 420 KDAGFVDIIA 429 (485)
Q Consensus 420 ~~aGf~~~~~ 429 (485)
+++||+.+.+
T Consensus 295 ~~aGf~~v~~ 304 (306)
T TIGR02716 295 ESLGYKDVTM 304 (306)
T ss_pred HHcCCCeeEe
Confidence 9999998764
No 81
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.68 E-value=1.3e-16 Score=136.38 Aligned_cols=109 Identities=25% Similarity=0.403 Sum_probs=99.9
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
+.++..++.....+|.|+|||+|..+..|+++ ++.++|+|.|++|++.|+++. ++++|..+|+.... ++...
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~---p~~~~ 93 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK---PEQPT 93 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC---CCCcc
Confidence 57888889999999999999999999999998 789999999999999998886 68999999999854 67899
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
|+++++.+++++++ ....+..+...|.|||.|.+.-+
T Consensus 94 dllfaNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 94 DLLFANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred chhhhhhhhhhccc--cHHHHHHHHHhhCCCceEEEECC
Confidence 99999999999998 67999999999999999999644
No 82
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.68 E-value=3.7e-16 Score=142.56 Aligned_cols=152 Identities=17% Similarity=0.165 Sum_probs=115.0
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHH---HHcCCCCCeEEEEeeccCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNE---EVNGHFENVKFMCADVTSPDLT 115 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~---~~~~~~~~~~~~~~d~~~~~~~ 115 (485)
.-...++...++..+|++|||||||+|+++..++++|+ .|+|+|.++-..-..+ +..+....+..+-..+++ ++
T Consensus 101 d~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~--Lp 178 (315)
T PF08003_consen 101 DWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED--LP 178 (315)
T ss_pred cchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh--cc
Confidence 34557788888888999999999999999999999987 5999999998776533 333322233444345666 55
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCC--------ccccCCCCCCCCChhHHHHHh
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSG--------DSKRKHNPTHYREPRFYSKVF 187 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 187 (485)
. .+.||+|+|.++|+|..+ .-..|++++..|+|||.+++.+....... ...+..+.++..+...+..++
T Consensus 179 ~-~~~FDtVF~MGVLYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl 255 (315)
T PF08003_consen 179 N-LGAFDTVFSMGVLYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWL 255 (315)
T ss_pred c-cCCcCEEEEeeehhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHH
Confidence 4 689999999999999998 45999999999999999999765544322 122233445556888999999
Q ss_pred hhcceecCC
Q 043471 188 KECQIQDAS 196 (485)
Q Consensus 188 ~~~~~~~~~ 196 (485)
+++||.++.
T Consensus 256 ~r~gF~~v~ 264 (315)
T PF08003_consen 256 ERAGFKDVR 264 (315)
T ss_pred HHcCCceEE
Confidence 999996644
No 83
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.67 E-value=6.1e-16 Score=144.38 Aligned_cols=173 Identities=18% Similarity=0.351 Sum_probs=118.2
Q ss_pred EEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHh------ccccccCCc-hHHH-HHHH----HHcC
Q 043471 213 YVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVF------GVGFVSTGG-IETT-KEFV----AKLD 280 (485)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~-~~~~----~~~~ 280 (485)
.+...+......++...+....-..+..|+....... +..+++.+. ...|++... .+.+ ..++ +...
T Consensus 18 ~~~~~k~~~l~~rl~~r~~~~~~~~~~~y~~~l~~~~-~~~e~~~l~~~lti~~T~FfR~~~~~~~l~~~vlp~l~~~~~ 96 (264)
T smart00138 18 VLTDYKRTLLQSRLSRRLRVLGLKDFSEYLELLTSHR-GEEELAELLDLMTTNETRFFRESKHFEALEEKVLPLLIASRR 96 (264)
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCC-cHHHHHHHHHHhhcCCCcccCCcHHHHHHHHHHhHHHHHhcC
Confidence 3444455566667777776666666777777654432 112222222 234444332 2222 2222 2223
Q ss_pred CCCCCEEEEECCCCCh----hHHHHhhcC------CCEEEEEeCCHHHHHHHHHHhcC----------------------
Q 043471 281 LKPGQKVLDVGCGIGG----GDFYMADKF------DVHVVGIDLSINMISFALERAIG---------------------- 328 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~----~~~~l~~~~------~~~v~g~D~s~~~~~~a~~~~~~---------------------- 328 (485)
..++.+|||+|||+|. +++.+++.. +.+|+|+|+|+.|++.|++....
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999996 455555532 36899999999999999985421
Q ss_pred ------CCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 329 ------LKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 329 ------~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...+|.|.+.|+.+.+++.++||+|+|.++++|++ +..+++++++++|+|||++++..
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 12368999999999887788999999999999996 45689999999999999999873
No 84
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.67 E-value=1.1e-15 Score=141.32 Aligned_cols=157 Identities=23% Similarity=0.298 Sum_probs=118.6
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-CCCCCccE
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-YPENSFDV 352 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~ 352 (485)
.+...+...++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.......+++...+..+.+ ..+++||+
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 117 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDV 117 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccE
Confidence 3334444567889999999999999988876 789999999999999999887654446788888877654 24578999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH--HHHHHh-------cCCCCCCHHHHHHHHHhCC
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF--SEYIKQ-------RGYDLHDVKSYGQMLKDAG 423 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~l~~aG 423 (485)
|++..+++|.+++..+++.+.++|+|||.+++..+........... ..+... ....+.+..++.++++++|
T Consensus 118 Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 197 (233)
T PRK05134 118 VTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAG 197 (233)
T ss_pred EEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCC
Confidence 9999999999999999999999999999999986542211000000 001100 1124568899999999999
Q ss_pred CeEEEEee
Q 043471 424 FVDIIAED 431 (485)
Q Consensus 424 f~~~~~~~ 431 (485)
|+++....
T Consensus 198 f~~v~~~~ 205 (233)
T PRK05134 198 LEVQDITG 205 (233)
T ss_pred CeEeeeee
Confidence 99987754
No 85
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=4.2e-16 Score=146.36 Aligned_cols=110 Identities=24% Similarity=0.386 Sum_probs=96.2
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..+.++..+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++. +++.++.+|+..+ . +++
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~--~-~~~ 92 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASW--Q-PPQ 92 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhcc--C-CCC
Confidence 3457777888888899999999999999999987 579999999999999999875 5789999999763 2 456
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+||+|+++.+++|+++ ...+++++.++|+|||.+++..
T Consensus 93 ~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 93 ALDLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CccEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEEC
Confidence 9999999999999988 5699999999999999999964
No 86
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.66 E-value=1.5e-15 Score=138.63 Aligned_cols=160 Identities=23% Similarity=0.282 Sum_probs=115.9
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHH--HHhcCCCCCeEEEEccCCCCCCCCCCcc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFAL--ERAIGLKCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~--~~~~~~~~~i~~~~~d~~~~~~~~~~fD 351 (485)
.+...+.--.|++|||||||.|..+..++.+....|+|+|+++...-+.+ +++.+....+.....-++++|. .++||
T Consensus 106 rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FD 184 (315)
T PF08003_consen 106 RLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFD 184 (315)
T ss_pred HHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcC
Confidence 34445533468899999999999999999884447999999987665533 2333333234444346677776 68999
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh--hHHHHHHh-cCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV--EFSEYIKQ-RGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+|+|.+|++|..++-..|++++..|+|||.+++.+..-....... .-..|.+. ..+..+|...+..+|+++||+.++
T Consensus 185 tVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 185 TVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred EEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 999999999999999999999999999999999876543322110 01112111 124567999999999999999998
Q ss_pred Eeecch
Q 043471 429 AEDRTE 434 (485)
Q Consensus 429 ~~~~~~ 434 (485)
+-+...
T Consensus 265 ~v~~~~ 270 (315)
T PF08003_consen 265 CVDVSP 270 (315)
T ss_pred EecCcc
Confidence 876553
No 87
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.66 E-value=3.9e-15 Score=130.83 Aligned_cols=125 Identities=26% Similarity=0.258 Sum_probs=101.3
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
++++.+|||+|||+|..+..++... +.+|+|+|+|+.|++.|+++....+ .++++..+|+.+.+. .++||+|+++.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence 3458899999999999999888754 6799999999999999999886544 259999999988776 67999999975
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
+.+.+.++++++++|||||++++.... .....+.++.+..|+.+..+..
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~---------------------~~~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKGR---------------------DPEEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeCC---------------------ChHHHHHHHHHhcCceEeeeEE
Confidence 457889999999999999999988421 1234567777778988765543
No 88
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.66 E-value=2.9e-16 Score=136.88 Aligned_cols=181 Identities=21% Similarity=0.285 Sum_probs=132.7
Q ss_pred HHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc----CcEEEEeCCh
Q 043471 11 EIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA----GHVIALDFID 86 (485)
Q Consensus 11 ~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~~v~giD~s~ 86 (485)
.++++|||. .|.+++..|...+.|+..+ -+.++...... ..+|||||||.|.....+.+.. -.|+++|.||
T Consensus 33 ~~~~k~wD~---fy~~~~~rFfkdR~wL~~E-fpel~~~~~~~-~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp 107 (264)
T KOG2361|consen 33 REASKYWDT---FYKIHENRFFKDRNWLLRE-FPELLPVDEKS-AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP 107 (264)
T ss_pred cchhhhhhh---hhhhccccccchhHHHHHh-hHHhhCccccC-hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCCh
Confidence 356889998 6667777665444443332 22222222222 2289999999999999998863 4799999999
Q ss_pred HHHHHHHHHcCCC-CCeEEEEeeccCCC--CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 87 SVIKKNEEVNGHF-ENVKFMCADVTSPD--LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 87 ~~~~~a~~~~~~~-~~~~~~~~d~~~~~--~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.+++..++..... .++...+.|++... -++..+++|.|++.++|.-++++...++++++.++|||||.|++.|....
T Consensus 108 ~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 108 RAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred HHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 9999999876533 36777888887654 34668899999999999999988899999999999999999999887653
Q ss_pred CCCc--------------cccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 164 QSGD--------------SKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 164 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
.... ........++.+.+.+..+|.++||....
T Consensus 188 DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~ 234 (264)
T KOG2361|consen 188 DLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQ 234 (264)
T ss_pred hHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhc
Confidence 2110 01123334666889999999999996544
No 89
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.66 E-value=1.3e-15 Score=141.48 Aligned_cols=146 Identities=24% Similarity=0.340 Sum_probs=114.5
Q ss_pred HHHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCCh
Q 043471 10 REIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFID 86 (485)
Q Consensus 10 ~~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~ 86 (485)
.+..+.+|++.+..|...... .........+..++..+...++.+|||+|||+|..+..+++.+ .+|+|+|+++
T Consensus 10 ~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 86 (239)
T PRK00216 10 QEKVAEMFDSIAPKYDLMNDL---LSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE 86 (239)
T ss_pred hHHHHHHHHHhhhhHHHHHHH---HhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH
Confidence 446678898877766421110 1112344556667777776678899999999999999998875 7999999999
Q ss_pred HHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 87 SVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 87 ~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
.+++.++++... ..+++++.+|+.+ .++++++||+|+++.++++..+ ...+++++.++|+|||.+++.+...
T Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 87 GMLAVGREKLRDLGLSGNVEFVQGDAEA--LPFPDNSFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred HHHHHHHHhhcccccccCeEEEeccccc--CCCCCCCccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecC
Confidence 999999997643 2478999999987 4456789999999999999987 6699999999999999999876543
No 90
>PRK06922 hypothetical protein; Provisional
Probab=99.66 E-value=2.2e-15 Score=152.00 Aligned_cols=110 Identities=25% Similarity=0.319 Sum_probs=94.0
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--CCCCCccEEEEc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--YPENSFDVIYSR 356 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~i~~~ 356 (485)
...++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|+++....+.++.++++|+.+++ +++++||+|+++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 34467899999999999998888865 679999999999999999887655557888999998877 778899999999
Q ss_pred cccccc-------------CCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 357 DTILHI-------------QDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 357 ~~~~~~-------------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
.++|++ .+...++++++++|||||++++.+...
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 998865 246789999999999999999987543
No 91
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.66 E-value=4.1e-15 Score=127.43 Aligned_cols=141 Identities=23% Similarity=0.378 Sum_probs=104.2
Q ss_pred HHHH-HcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 274 EFVA-KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 274 ~~~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
.++. .++-..-.++||+|||.|.++..|+.+. -+++++|+|+.+++.|++++.+.. +|++.+.|+.+. .|+++||+
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~-~V~~~~~dvp~~-~P~~~FDL 109 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLP-HVEWIQADVPEF-WPEGRFDL 109 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-S-SEEEEES-TTT----SS-EEE
T ss_pred HHHHHhcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCC-CeEEEECcCCCC-CCCCCeeE
Confidence 3443 4666666799999999999999999995 499999999999999999998764 899999999885 46799999
Q ss_pred EEEcccccccCC---HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 353 IYSRDTILHIQD---KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 353 i~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
|+++++++++.+ ...++..+...|+|||.+++..+.. ......| .....+.+.++|.+. |..++.
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd----------~~c~~wg-h~~ga~tv~~~~~~~-~~~~~~ 177 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD----------ANCRRWG-HAAGAETVLEMLQEH-LTEVER 177 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H----------HHHHHTT--S--HHHHHHHHHHH-SEEEEE
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC----------CcccccC-cccchHHHHHHHHHH-hhheeE
Confidence 999999999965 4568999999999999999986521 1222333 345788999999987 655543
No 92
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.66 E-value=4.8e-16 Score=147.05 Aligned_cols=141 Identities=22% Similarity=0.317 Sum_probs=106.8
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
...++.+|||||||+|..+..+++. + .+|+|+|+|++|++.|+++... ..+++++.+|+.+ +++++++||+|+
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~--l~~~~~~fD~Vi 151 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEA--LPVADNSVDVII 151 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhh--CCCCCCceeEEE
Confidence 4567889999999999988877765 4 3699999999999999986432 2589999999987 566788999999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc--c---C--CCCCCCCChhHHHHHhhhcceecC
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK--R---K--HNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~---~--~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
++.+++|.++ ...++++++++|||||++++.+.......... . . .......+...+..+++++||...
T Consensus 152 ~~~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 152 SNCVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred EcCcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence 9999999987 56899999999999999999876543211000 0 0 001112356678888888888543
No 93
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.65 E-value=2.2e-16 Score=131.11 Aligned_cols=170 Identities=19% Similarity=0.294 Sum_probs=118.0
Q ss_pred CChhHHHHHHHHhhh-cCcCcchhhhhcCCCcCccChhhhHHHhc----cCC---CCCC-CcEEEEcCCCCcchHHHHhh
Q 043471 5 SNHGEREIQKNYWME-HSANLTVEAMMLDSKASDLDKEERPEVLS----LLP---PYEG-KTVLEFGAGIGRFTGELAKK 75 (485)
Q Consensus 5 ~~~~~~~~~~~yw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~-~~vLDiGcG~G~~~~~l~~~ 75 (485)
++.+|....|.|||+ ++....-...-.|+..-|.......++++ .+. ..+. .+|||+|||+|.+...|++.
T Consensus 9 dl~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~e 88 (227)
T KOG1271|consen 9 DLGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKE 88 (227)
T ss_pred cccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHh
Confidence 488899999999998 33333222222344444554444444433 333 2233 39999999999999999998
Q ss_pred cC--cEEEEeCChHHHHHHHHHcC--CCCC-eEEEEeeccCCCCCCCCCCeeEEEhhhhhhcc------ChHHHHHHHHH
Q 043471 76 AG--HVIALDFIDSVIKKNEEVNG--HFEN-VKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL------SDKEVEKLAER 144 (485)
Q Consensus 76 ~~--~v~giD~s~~~~~~a~~~~~--~~~~-~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~------~~~~~~~~l~~ 144 (485)
|. ..+|+|+|+++++.|+..+. ..++ |+|.+.|+.+.+ +..++||+|.--+++--+ +...+.-++..
T Consensus 89 gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~--~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~ 166 (227)
T KOG1271|consen 89 GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD--FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDS 166 (227)
T ss_pred cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc--ccccceeEEeecCceeeeecCCCCcccceeeehhh
Confidence 64 58999999999999887543 2344 999999999853 456788888765544322 11223568888
Q ss_pred HHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 145 MVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 145 ~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
+.++|+|||+++|...++ +...+...+++.+|
T Consensus 167 v~~ll~~~gifvItSCN~----------------T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 167 VEKLLSPGGIFVITSCNF----------------TKDELVEEFENFNF 198 (227)
T ss_pred HhhccCCCcEEEEEecCc----------------cHHHHHHHHhcCCe
Confidence 999999999999987765 45566777777665
No 94
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.65 E-value=1.7e-15 Score=131.84 Aligned_cols=147 Identities=22% Similarity=0.313 Sum_probs=104.8
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEE
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVI 353 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i 353 (485)
.+++.+..-++.++||+|||.|+.+.+||++ |..|+++|+|+..++.+++.....+..++..+.|+.+..++ +.||+|
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEE
Confidence 3455555556679999999999999999998 89999999999999998887765555799999999888765 689999
Q ss_pred EEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 354 YSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 354 ~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
++..+++|++ ..+.+++.+...++|||++++......+..+.+. +.. ..+.+.++.+.+. |++++..++
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~------~~~-f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPS------PFP-FLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--------S---B-TTHHHHHTT--TSEEEEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCC------CCC-cccCHHHHHHHhC--CCeEEEEEc
Confidence 9999999884 5678999999999999999887654433222110 001 1234566666665 688877543
No 95
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.65 E-value=9.7e-15 Score=131.39 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=113.0
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC-------------CCCCeEE
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG-------------LKCSVEF 335 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~-------------~~~~i~~ 335 (485)
.+.+.++++.+...++.+|||+|||.|..+.+||++ |.+|+|+|+|+.+++.+.+...- ...++++
T Consensus 20 ~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 98 (213)
T TIGR03840 20 NPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEI 98 (213)
T ss_pred CHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEE
Confidence 345556666665567789999999999999999988 89999999999999986443210 1246899
Q ss_pred EEccCCCCCCC-CCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCH
Q 043471 336 EVADCTKKTYP-ENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDV 412 (485)
Q Consensus 336 ~~~d~~~~~~~-~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (485)
.++|+.+++.. .++||.|+...+++|++ .+..+++.+.++|||||++++..+........ .+ ....+.
T Consensus 99 ~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-------gp--p~~~~~ 169 (213)
T TIGR03840 99 FCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-------GP--PFSVSP 169 (213)
T ss_pred EEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-------Cc--CCCCCH
Confidence 99999887642 46799999999999995 46779999999999999877775544321110 01 124678
Q ss_pred HHHHHHHHhCCCeEEEEee
Q 043471 413 KSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~~ 431 (485)
+++.+++.. +|.+..++.
T Consensus 170 ~eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 170 AEVEALYGG-HYEIELLES 187 (213)
T ss_pred HHHHHHhcC-CceEEEEee
Confidence 899988864 576665544
No 96
>PRK08317 hypothetical protein; Provisional
Probab=99.65 E-value=2.1e-15 Score=140.30 Aligned_cols=152 Identities=24% Similarity=0.348 Sum_probs=116.0
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHc-CCCCCeEEEEeeccCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVN-GHFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~-~~~~~~~~~~~d~~~~~~~~ 116 (485)
..+..+++.+...++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.++++. ....++++..+|+.. .++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~ 83 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG--LPF 83 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc--CCC
Confidence 455677888888889999999999999999998863 58999999999999998872 233589999999987 456
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc------c----CC--CCCCCCChhHHH
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK------R----KH--NPTHYREPRFYS 184 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~----~~--~~~~~~~~~~~~ 184 (485)
++++||+|++..+++|+++ ...+++++.++|+|||++++.++......... . .. ..........+.
T Consensus 84 ~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLP 161 (241)
T ss_pred CCCCceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 7789999999999999988 56899999999999999999875432110000 0 00 001111345678
Q ss_pred HHhhhcceecCC
Q 043471 185 KVFKECQIQDAS 196 (485)
Q Consensus 185 ~~~~~~~~~~~~ 196 (485)
..++++||....
T Consensus 162 ~~l~~aGf~~~~ 173 (241)
T PRK08317 162 GLFREAGLTDIE 173 (241)
T ss_pred HHHHHcCCCcee
Confidence 889999986544
No 97
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.64 E-value=1.4e-15 Score=138.96 Aligned_cols=151 Identities=21% Similarity=0.242 Sum_probs=113.0
Q ss_pred hhhHHHhccCC--CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLLP--PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~ 115 (485)
..+..+++.+. ..++.+|||+|||+|.++..+++.+.+|+|+|+|++|+..|+++.... .++.+.++|+.. ++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~ 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS--LC 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh--CC
Confidence 44556666666 456889999999999999999998889999999999999999876432 378999999877 32
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC------Cccc--cCCCCCCCCChhHHHHHh
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS------GDSK--RKHNPTHYREPRFYSKVF 187 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~ 187 (485)
++||+|++..+++|++.+....+++++.+++++++++.+........ .... ......+..+++.+..++
T Consensus 118 ---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 194 (219)
T TIGR02021 118 ---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERAL 194 (219)
T ss_pred ---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHH
Confidence 78999999999999987668899999999999877766532211000 0000 111223344788899999
Q ss_pred hhcceecCC
Q 043471 188 KECQIQDAS 196 (485)
Q Consensus 188 ~~~~~~~~~ 196 (485)
+++||....
T Consensus 195 ~~~Gf~v~~ 203 (219)
T TIGR02021 195 GELGWKIVR 203 (219)
T ss_pred HHcCceeee
Confidence 999986544
No 98
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.64 E-value=3.6e-15 Score=141.52 Aligned_cols=156 Identities=22% Similarity=0.218 Sum_probs=106.1
Q ss_pred HHHHHHHHcCC---CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC------CCCeEEEEccCC
Q 043471 271 TTKEFVAKLDL---KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL------KCSVEFEVADCT 341 (485)
Q Consensus 271 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~~~i~~~~~d~~ 341 (485)
..+.+++.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++.... ..++.+...|+.
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 34445555432 25789999999999999999987 789999999999999999987532 235788888876
Q ss_pred CCCCCCCCccEEEEcccccccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH---HHHHHh-c---CCCCCCH
Q 043471 342 KKTYPENSFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF---SEYIKQ-R---GYDLHDV 412 (485)
Q Consensus 342 ~~~~~~~~fD~i~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~---~~~~~~-~---~~~~~~~ 412 (485)
.+ +++||+|+|..+++|+++ ...+++.+.+ +.+||. ++..... ......+ ...+.. . ...+++.
T Consensus 208 ~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~--~~~~~~l~~~g~~~~g~~~~~r~y~~s~ 280 (315)
T PLN02585 208 SL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPK--TLYYDILKRIGELFPGPSKATRAYLHAE 280 (315)
T ss_pred hc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCc--chHHHHHHHHHhhcCCCCcCceeeeCCH
Confidence 54 478999999999999865 3346666665 455554 4442111 1100101 111110 0 0124579
Q ss_pred HHHHHHHHhCCCeEEEEeecch
Q 043471 413 KSYGQMLKDAGFVDIIAEDRTE 434 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~~~~~ 434 (485)
+++.++|+++||++...+....
T Consensus 281 eel~~lL~~AGf~v~~~~~~~~ 302 (315)
T PLN02585 281 ADVERALKKAGWKVARREMTAT 302 (315)
T ss_pred HHHHHHHHHCCCEEEEEEEeec
Confidence 9999999999999987665443
No 99
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.64 E-value=1.7e-15 Score=148.62 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=98.9
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
...+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++... .++++..+|... + +++|
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~-l~v~~~~~D~~~--l---~~~f 229 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG-LPVEIRLQDYRD--L---NGQF 229 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-CeEEEEECchhh--c---CCCC
Confidence 345677788888999999999999999999986 78999999999999999998753 257888888765 2 4789
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
|+|++..+++|++......+++++.++|||||++++.++...
T Consensus 230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 999999999999877788999999999999999999876543
No 100
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.64 E-value=6.2e-15 Score=131.96 Aligned_cols=142 Identities=17% Similarity=0.302 Sum_probs=104.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCC-C-CCCCCCccEEEEcccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTK-K-TYPENSFDVIYSRDTI 359 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~i~~~~~~ 359 (485)
+++.+|||+|||+|.++..+++..+..++|+|+|+.+++.++++ +++++++|+.+ + ++++++||+|+++.++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 46779999999999999999877677899999999999998753 46788888865 3 3667899999999999
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEecccCCC-----------CCC-hhH-HHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFG-----------TPS-VEF-SEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----------~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+|++++..+++++.|++++ ++++.+..... .+. ..+ ..+....+..+.+.+++.++++++||++
T Consensus 86 ~~~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v 162 (194)
T TIGR02081 86 QATRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRI 162 (194)
T ss_pred HcCcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEE
Confidence 9999999999999887664 34442211000 000 000 0000111234678999999999999999
Q ss_pred EEEeec
Q 043471 427 IIAEDR 432 (485)
Q Consensus 427 ~~~~~~ 432 (485)
+.....
T Consensus 163 ~~~~~~ 168 (194)
T TIGR02081 163 LDRAAF 168 (194)
T ss_pred EEEEEe
Confidence 876544
No 101
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.64 E-value=6.8e-15 Score=135.21 Aligned_cols=150 Identities=25% Similarity=0.306 Sum_probs=114.7
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCCCCC-CCCccEEEEccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKKTYP-ENSFDVIYSRDTIL 360 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~~~~-~~~fD~i~~~~~~~ 360 (485)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+. ++.+...|+.+.+.. .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 4679999999999999988876 66899999999999999998764443 588888888776543 37899999999999
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH--HHHHH----h---cCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF--SEYIK----Q---RGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--~~~~~----~---~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
|+.++..+++++.++|+|||.+++.............. ..+.. . ....+.+..++.++++++||+++++..
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeee
Confidence 99999999999999999999999886543211000000 00110 0 112356788999999999999998765
Q ss_pred cc
Q 043471 432 RT 433 (485)
Q Consensus 432 ~~ 433 (485)
..
T Consensus 204 ~~ 205 (224)
T TIGR01983 204 LV 205 (224)
T ss_pred EE
Confidence 43
No 102
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.63 E-value=8.4e-15 Score=129.37 Aligned_cols=134 Identities=22% Similarity=0.242 Sum_probs=106.7
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEc
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSR 356 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~ 356 (485)
..+...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+.++++..+|..+.+ .++||+|+++
T Consensus 13 ~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n 89 (179)
T TIGR00537 13 ANLRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFN 89 (179)
T ss_pred HHHHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEEC
Confidence 3344445679999999999999999987 449999999999999999988655557888899987654 4589999999
Q ss_pred ccccccCC---------------------HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHH
Q 043471 357 DTILHIQD---------------------KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSY 415 (485)
Q Consensus 357 ~~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (485)
..+++.++ ...+++++.++|||||++++..... ....++
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~--------------------~~~~~~ 149 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL--------------------NGEPDT 149 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc--------------------CChHHH
Confidence 88876643 3567999999999999999885322 125678
Q ss_pred HHHHHhCCCeEEEEeecc
Q 043471 416 GQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 416 ~~~l~~aGf~~~~~~~~~ 433 (485)
.+.|++.||....+....
T Consensus 150 ~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 150 FDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHHHHhCCCeEEEEEEee
Confidence 899999999987776543
No 103
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.63 E-value=2.6e-16 Score=125.05 Aligned_cols=94 Identities=30% Similarity=0.567 Sum_probs=80.1
Q ss_pred EEEECCCCChhHHHHhhcC--C--CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEc-ccccc
Q 043471 287 VLDVGCGIGGGDFYMADKF--D--VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSR-DTILH 361 (485)
Q Consensus 287 vLDiGcG~G~~~~~l~~~~--~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~-~~~~~ 361 (485)
|||+|||+|..+..+++.+ + .+++|+|+|+.|++.++++....+.+++++++|+.++++.+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999876 3 79999999999999999998654558999999999988878899999995 45999
Q ss_pred cC--CHHHHHHHHHhcCCCCc
Q 043471 362 IQ--DKPALFKSFFKWLKPGG 380 (485)
Q Consensus 362 ~~--~~~~~l~~~~~~LkpgG 380 (485)
+. +...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 85 57789999999999998
No 104
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.63 E-value=6.2e-17 Score=128.29 Aligned_cols=95 Identities=23% Similarity=0.347 Sum_probs=62.8
Q ss_pred EEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCC--CeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccC
Q 043471 59 LEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFE--NVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLS 134 (485)
Q Consensus 59 LDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~ 134 (485)
||||||+|.++..+++. ..+++|+|+|+.|++.|+++..... +......+..+.......++||+|+++.++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999988 7899999999999988887765433 3333333333321111236999999999999996
Q ss_pred hHHHHHHHHHHHhhcccCcEE
Q 043471 135 DKEVEKLAERMVKWLKVGGYI 155 (485)
Q Consensus 135 ~~~~~~~l~~~~~~L~pgG~l 155 (485)
+ .+.++++++++|+|||.|
T Consensus 81 ~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-EE
T ss_pred h--HHHHHHHHHHHcCCCCCC
Confidence 6 779999999999999986
No 105
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.63 E-value=9e-17 Score=127.36 Aligned_cols=95 Identities=31% Similarity=0.517 Sum_probs=64.5
Q ss_pred EEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCCCccEEEEcccccccC
Q 043471 288 LDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 288 LDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~~fD~i~~~~~~~~~~ 363 (485)
||||||+|.++..+++.. ..+++|+|+|+.|++.|++++.... .+......+..+.. ...++||+|++..+++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 799999999999998885 5699999999999988888776544 23333333333321 1225999999999999999
Q ss_pred CHHHHHHHHHhcCCCCcEE
Q 043471 364 DKPALFKSFFKWLKPGGTV 382 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG~l 382 (485)
++..++++++++|||||++
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 106
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.62 E-value=2.5e-15 Score=140.21 Aligned_cols=107 Identities=22% Similarity=0.311 Sum_probs=87.9
Q ss_pred CCCCCcEEEEcCCCCc----chHHHHhh-------cCcEEEEeCChHHHHHHHHHcCC----------------------
Q 043471 52 PYEGKTVLEFGAGIGR----FTGELAKK-------AGHVIALDFIDSVIKKNEEVNGH---------------------- 98 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~----~~~~l~~~-------~~~v~giD~s~~~~~~a~~~~~~---------------------- 98 (485)
..++.+|+|+|||+|. ++..+++. +.+|+|+|+|+.|++.|++....
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999996 45555554 25799999999999999985310
Q ss_pred -------CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 99 -------FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 99 -------~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
-.+++|.++|+.+ .+++.++||+|+|.++++|++++...+++++++++|+|||++++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 0268999999988 44467899999999999999987788999999999999999999644
No 107
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.62 E-value=4.1e-14 Score=127.83 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=112.9
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC-------------CCCCeEE
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG-------------LKCSVEF 335 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~-------------~~~~i~~ 335 (485)
.+.+.+.+..+.+.++.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+...- ...++++
T Consensus 23 ~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 101 (218)
T PRK13255 23 NPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITI 101 (218)
T ss_pred CHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEE
Confidence 355566666666667789999999999999999987 89999999999999987432210 1346889
Q ss_pred EEccCCCCCCC-CCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCH
Q 043471 336 EVADCTKKTYP-ENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDV 412 (485)
Q Consensus 336 ~~~d~~~~~~~-~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (485)
.++|+.+++.. ...||+|+...+++|++ .+..+++.+.++|+|||++++......+.... ......+.
T Consensus 102 ~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~---------gPp~~~~~ 172 (218)
T PRK13255 102 YCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA---------GPPFSVSD 172 (218)
T ss_pred EECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC---------CCCCCCCH
Confidence 99999887533 25899999999999995 57789999999999999765543333221110 00124688
Q ss_pred HHHHHHHHhCCCeEEEEeec
Q 043471 413 KSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~~~ 432 (485)
+++.+++.. +|++..++..
T Consensus 173 ~el~~~~~~-~~~i~~~~~~ 191 (218)
T PRK13255 173 EEVEALYAG-CFEIELLERQ 191 (218)
T ss_pred HHHHHHhcC-CceEEEeeec
Confidence 999998853 3777766543
No 108
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.62 E-value=2e-15 Score=140.34 Aligned_cols=115 Identities=29% Similarity=0.483 Sum_probs=96.2
Q ss_pred hhHHHhccCCC---CCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC
Q 043471 42 ERPEVLSLLPP---YEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 42 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 116 (485)
....+++.+.. ..+.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++.. +++.++.+|+.. .++
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~--~~~ 94 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEK--LPL 94 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhh--CCC
Confidence 33444444442 345789999999999999999885 468999999999999998875 488999999988 556
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
++++||+|+++.+++|+.+ ...+++++.++|+|||.+++.++..
T Consensus 95 ~~~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 95 EDSSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred CCCceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 7889999999999999987 5689999999999999999986543
No 109
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.62 E-value=5.4e-15 Score=127.56 Aligned_cols=124 Identities=21% Similarity=0.304 Sum_probs=96.3
Q ss_pred EEEeCCHHHHHHHHHHhc--C--CCCCeEEEEccCCCCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 310 VGIDLSINMISFALERAI--G--LKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 310 ~g~D~s~~~~~~a~~~~~--~--~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
+|+|+|++|++.|+++.. . ...+++++++|+.++|+++++||+|++..++++++|+..++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999987654 1 124699999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCChhHH---------------------HHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 386 DYCKSFGTPSVEFS---------------------EYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 386 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
++..........+. .+....-..+.+.+++.++|+++||+.+.....+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 88754321110000 0110000145789999999999999988766544
No 110
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.62 E-value=5.9e-15 Score=136.41 Aligned_cols=170 Identities=14% Similarity=0.183 Sum_probs=120.5
Q ss_pred HHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHH
Q 043471 14 KNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNE 93 (485)
Q Consensus 14 ~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~ 93 (485)
..||+.+......+.+ .+.....+...+...++.+|||||||+|.++..+++.+.+|+++|+++.++..++
T Consensus 17 ~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~ 87 (233)
T PRK05134 17 ARWWDPNGEFKPLHRI---------NPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVAR 87 (233)
T ss_pred HHHhccCCCcHHHHHh---------hHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 5588775543333222 2333445555555667889999999999999999988899999999999999998
Q ss_pred HHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc----
Q 043471 94 EVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS---- 168 (485)
Q Consensus 94 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~---- 168 (485)
++.... .++++..+++.... ....++||+|+++.+++|.++ ...+++.+.++|+|||.+++..+........
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~Ii~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~ 164 (233)
T PRK05134 88 LHALESGLKIDYRQTTAEELA-AEHPGQFDVVTCMEMLEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIV 164 (233)
T ss_pred HHHHHcCCceEEEecCHHHhh-hhcCCCccEEEEhhHhhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHh
Confidence 865322 25788888887632 124579999999999999988 5689999999999999999976542111000
Q ss_pred ----------ccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 169 ----------KRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 169 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
........+.+.+.+..++.++||...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 165 GAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred hHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 000011123366778899999998654
No 111
>PRK06202 hypothetical protein; Provisional
Probab=99.61 E-value=4.5e-15 Score=136.91 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=105.3
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-----CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-----DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYS 355 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~ 355 (485)
..++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|+++... .++++...+...++.++++||+|++
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--PGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--CCCeEEEEecccccccCCCccEEEE
Confidence 3566799999999999988887532 35999999999999999887542 2466777777667667789999999
Q ss_pred cccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHH--H------HHHh----cCCCCCCHHHHHHHHHh
Q 043471 356 RDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFS--E------YIKQ----RGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 356 ~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~--~------~~~~----~~~~~~~~~~~~~~l~~ 421 (485)
+.++||+++. ..+++++.|+++ |.+++.+............. . +... .....++.+++.+++++
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~ 213 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ 213 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC
Confidence 9999999874 579999999998 66777766544211000000 0 0000 01246789999999999
Q ss_pred CCCeEEEEe
Q 043471 422 AGFVDIIAE 430 (485)
Q Consensus 422 aGf~~~~~~ 430 (485)
||++...-
T Consensus 214 -Gf~~~~~~ 221 (232)
T PRK06202 214 -GWRVERQW 221 (232)
T ss_pred -CCeEEecc
Confidence 99987643
No 112
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.61 E-value=1.4e-14 Score=133.79 Aligned_cols=154 Identities=23% Similarity=0.298 Sum_probs=108.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
..++.+|||+|||+|.++..+++. +..|+|+|+|+.|++.|+++....+ .++.+..+|+. ..+++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcch
Confidence 467789999999999999999987 6789999999999999999876433 47889888843 33578999999999
Q ss_pred ccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHH--------hcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 359 ILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIK--------QRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 359 ~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
++|++ +...+++++.+.+++++.+.+. .... . ......+. .......+..++.++++++||++..
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~~~--~~~~--~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 211 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFTFA--PYTP--L-LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVR 211 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEEEC--CccH--H-HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEe
Confidence 98875 4567888988877554443322 1110 0 01111110 1112345788999999999999998
Q ss_pred Eeecch-HHHHHHHHH
Q 043471 429 AEDRTE-QFVQVLQRE 443 (485)
Q Consensus 429 ~~~~~~-~~~~~~~~~ 443 (485)
...... .|...+..|
T Consensus 212 ~~~~~~~~~~~~~~~~ 227 (230)
T PRK07580 212 TERISSGFYFSRLLEA 227 (230)
T ss_pred eeeccchhHHHHHHHH
Confidence 876443 344444444
No 113
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.61 E-value=1.2e-14 Score=133.61 Aligned_cols=118 Identities=27% Similarity=0.419 Sum_probs=100.6
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC---cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG---HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 116 (485)
...+..+++.+...++.+|||+|||+|..+..+++... +++|+|+++.+++.++++.....+++++.+|+.+ .++
T Consensus 25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~ 102 (223)
T TIGR01934 25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA--LPF 102 (223)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc--CCC
Confidence 35556777777777889999999999999999998744 8999999999999999876533579999999987 556
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+.++||+|+++.+++|.++ ...+++++.++|+|||++++.+..
T Consensus 103 ~~~~~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 103 EDNSFDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CCCcEEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEec
Confidence 6789999999999999987 669999999999999999987654
No 114
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.61 E-value=1.9e-14 Score=126.37 Aligned_cols=128 Identities=23% Similarity=0.263 Sum_probs=96.4
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
++.+|||+|||+|.++..++... +.+|+|+|+|+.|++.++++....+ .+++++.+|+.+++ ..++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh---
Confidence 37899999999999999888664 4689999999999999988876443 36999999998864 357899999976
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
+.+.+.+++.+.++|+|||.+++..... .........+.+...||+.+.....+
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~~~~------------------~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYKGKK------------------YLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEcCCC------------------cHHHHHHHHHhhhhcCceEeeccccC
Confidence 3467788999999999999999873110 00012233344445899988775443
No 115
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.61 E-value=7e-15 Score=125.90 Aligned_cols=145 Identities=19% Similarity=0.356 Sum_probs=111.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC--CCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK--TYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~i~~~~~ 358 (485)
++|+.+|||+|||.|.++.+|.+..+++..|+|++++.+..|.++ .+.++++|+.+- .|++++||.|+.+.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 678999999999999999999987689999999999999988776 577899999763 488999999999999
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCC-----------CCCCh-hH-HHHHHhcCCCCCCHHHHHHHHHhCCCe
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF-----------GTPSV-EF-SEYIKQRGYDLHDVKSYGQMLKDAGFV 425 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----------~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~aGf~ 425 (485)
++++.++..+|+++.|+ |...+++.++... ..|.. .+ ..+......++.|..+.+++.++.|++
T Consensus 85 LQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~ 161 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIR 161 (193)
T ss_pred HHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCE
Confidence 99999999999999776 5567777543211 00100 00 011112233567899999999999999
Q ss_pred EEEEeecch
Q 043471 426 DIIAEDRTE 434 (485)
Q Consensus 426 ~~~~~~~~~ 434 (485)
+++......
T Consensus 162 I~~~~~~~~ 170 (193)
T PF07021_consen 162 IEERVFLDG 170 (193)
T ss_pred EEEEEEEcC
Confidence 987655443
No 116
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.61 E-value=1.7e-14 Score=129.34 Aligned_cols=138 Identities=13% Similarity=0.062 Sum_probs=107.7
Q ss_pred hccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--------------CCCCeEEEEeeccCC
Q 043471 47 LSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--------------HFENVKFMCADVTSP 112 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--------------~~~~~~~~~~d~~~~ 112 (485)
+..+...++.+||+.|||.|..+.+|+++|++|+|+|+|+.+++.+.+.++ ...++++.++|+.++
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence 344455567899999999999999999999999999999999999866431 124799999999884
Q ss_pred CCC-CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 113 DLT-FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 113 ~~~-~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
+.+ -..+.||+|+-..++++++++.+.++.+.+.++|+|||.+++-...... ....|.+..+.+.++..+..
T Consensus 116 ~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~-----~~~GPPf~v~~~e~~~lf~~ 188 (226)
T PRK13256 116 PKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK-----KSQTPPYSVTQAELIKNFSA 188 (226)
T ss_pred CccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC-----CCCCCCCcCCHHHHHHhccC
Confidence 311 1236899999999999999888999999999999999998886543221 12334444567788888765
No 117
>PRK04266 fibrillarin; Provisional
Probab=99.61 E-value=4.9e-14 Score=127.77 Aligned_cols=141 Identities=21% Similarity=0.196 Sum_probs=100.3
Q ss_pred HcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC----CCCCCCccE
Q 043471 278 KLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK----TYPENSFDV 352 (485)
Q Consensus 278 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~ 352 (485)
.+.++++.+|||+|||+|.++..+++.. ..+|+|+|+++.|++.+.+++... .++.++.+|+... ++ .++||+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l-~~~~D~ 144 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHV-VEKVDV 144 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhc-cccCCE
Confidence 5788899999999999999999999876 359999999999999887766543 4788999998652 22 256999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
|++... .......++++++++|||||+++++-....-....... . ......+.++++||+++...+.
T Consensus 145 i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~---------~--~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 145 IYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPK---------E--IFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred EEECCC--ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHH---------H--HHHHHHHHHHHcCCeEEEEEcC
Confidence 986421 11122356899999999999999952221110000000 0 0134459999999999988775
Q ss_pred c
Q 043471 433 T 433 (485)
Q Consensus 433 ~ 433 (485)
.
T Consensus 212 ~ 212 (226)
T PRK04266 212 E 212 (226)
T ss_pred C
Confidence 4
No 118
>PRK06922 hypothetical protein; Provisional
Probab=99.60 E-value=5.5e-15 Score=149.11 Aligned_cols=111 Identities=21% Similarity=0.328 Sum_probs=91.8
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
.++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|+++.... .+++++++|+.+++..+++++||+|+++.+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 35789999999999999999876 569999999999999999875432 368889999887432277899999999998
Q ss_pred hhccC-----------hHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 130 LMYLS-----------DKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 130 ~~~~~-----------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+|++. .....+++++++++|||||.+++.+....
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 88752 34578999999999999999999876544
No 119
>PRK06202 hypothetical protein; Provisional
Probab=99.60 E-value=6.7e-15 Score=135.73 Aligned_cols=142 Identities=17% Similarity=0.124 Sum_probs=102.4
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh----c--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK----A--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
...++.+|||||||+|.++..|++. | .+|+|+|+|++|++.|+++... .++++.+++... ++.++++||+|
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~--l~~~~~~fD~V 133 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDE--LVAEGERFDVV 133 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEeccc--ccccCCCccEE
Confidence 3356789999999999999888753 3 4899999999999999887542 467888888776 44467899999
Q ss_pred EhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC--------------CccccC---CCCCCCCChhHHHHHh
Q 043471 125 FSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS--------------GDSKRK---HNPTHYREPRFYSKVF 187 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~--------------~~~~~~---~~~~~~~~~~~~~~~~ 187 (485)
+|+.++||++++....+++++.++++ |.+++.+...... ...... .......+++.+.+.+
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 99999999998777789999999998 5566655432210 000000 0012233677788888
Q ss_pred hhcceecCCCC
Q 043471 188 KECQIQDASGN 198 (485)
Q Consensus 188 ~~~~~~~~~g~ 198 (485)
++ ||......
T Consensus 212 ~~-Gf~~~~~~ 221 (232)
T PRK06202 212 PQ-GWRVERQW 221 (232)
T ss_pred hC-CCeEEecc
Confidence 88 87654433
No 120
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.60 E-value=4.2e-15 Score=141.05 Aligned_cols=146 Identities=16% Similarity=0.111 Sum_probs=102.8
Q ss_pred hhHHHhccCCC---CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-------CCeEEEEeeccC
Q 043471 42 ERPEVLSLLPP---YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-------ENVKFMCADVTS 111 (485)
Q Consensus 42 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~ 111 (485)
..+.+++.+.. .++.+|||||||+|.++..|++.|.+|+|+|+|+.|++.|+++.... .+++|.++|+..
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 34555555543 35789999999999999999999999999999999999999875431 357888888765
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc-------ccCC---CCCCCCChh
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS-------KRKH---NPTHYREPR 181 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-------~~~~---~~~~~~~~~ 181 (485)
+ +++||+|+|..+++|++++....+++.+.++ .+||. +++.......... .... ...++...+
T Consensus 209 --l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~e 281 (315)
T PLN02585 209 --L---SGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEA 281 (315)
T ss_pred --c---CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHH
Confidence 2 4789999999999999876666777777764 55555 4433211100000 0000 012234688
Q ss_pred HHHHHhhhcceec
Q 043471 182 FYSKVFKECQIQD 194 (485)
Q Consensus 182 ~~~~~~~~~~~~~ 194 (485)
.+++.++++||..
T Consensus 282 el~~lL~~AGf~v 294 (315)
T PLN02585 282 DVERALKKAGWKV 294 (315)
T ss_pred HHHHHHHHCCCEE
Confidence 8999999999854
No 121
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.59 E-value=1.4e-14 Score=129.82 Aligned_cols=102 Identities=17% Similarity=0.372 Sum_probs=87.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
+.++.+|||+|||+|..+..+++.. +.+++|+|+|+.|++.|+++.. ++.+.++|+.+ |+++++||+|++..++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-~~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-PFKDNFFDLVLTKGVL 115 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-CCCCCCEEEEEECChh
Confidence 4466799999999999999998874 6799999999999999998754 56788899888 8888999999999999
Q ss_pred cccC--CHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 360 LHIQ--DKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 360 ~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
+|++ +..++++++.|++ ++.+++.++..
T Consensus 116 ~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 116 IHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 9995 4678899999987 56888887644
No 122
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.59 E-value=1.6e-15 Score=146.76 Aligned_cols=115 Identities=20% Similarity=0.324 Sum_probs=81.4
Q ss_pred hhHHHhccCCC--CCC--CcEEEEcCCCCcchHHHHhhcCcEEEE---eCChHHHHHHHHHcCCCCCeEEEEeeccCCCC
Q 043471 42 ERPEVLSLLPP--YEG--KTVLEFGAGIGRFTGELAKKAGHVIAL---DFIDSVIKKNEEVNGHFENVKFMCADVTSPDL 114 (485)
Q Consensus 42 ~~~~~~~~~~~--~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gi---D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~ 114 (485)
+...+.+.++. ..+ ..+||||||+|.++.+|.+++..+..+ |..+..++.|-++ .+..+.+-+....+
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR-----Gvpa~~~~~~s~rL 175 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER-----GVPAMIGVLGSQRL 175 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc-----Ccchhhhhhccccc
Confidence 34455555554 222 369999999999999999997544333 3344556666654 35555555544559
Q ss_pred CCCCCCeeEEEhhhhhhcc-ChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 115 TFSEDSVDMMFSNWLLMYL-SDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
||++++||+|.|+-++-.. +.. .-+|-++.|+|||||+++++.+...
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cCCccchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCccc
Confidence 9999999999998876444 332 3689999999999999999766543
No 123
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.59 E-value=6.4e-14 Score=124.67 Aligned_cols=134 Identities=18% Similarity=0.278 Sum_probs=105.1
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~f 350 (485)
..+++.+.+.++.+|||+|||+|.++..+++.. +.+++++|+|+.+++.|++++...+ .++++..+|... ++ .++|
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~-~~~~ 98 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL-PGKA 98 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc-CcCC
Confidence 345577777888999999999999999998875 4699999999999999998875432 368888888742 33 3679
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|+|++..... ....+++.+.+.|+|||++++.... ..+..++.+.++++||+.+.+.
T Consensus 99 D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~--------------------~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 99 DAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFIL--------------------LENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred CEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEec--------------------HhhHHHHHHHHHHCCCCcceEE
Confidence 9999976543 4577899999999999999886421 1234677889999999876654
Q ss_pred e
Q 043471 431 D 431 (485)
Q Consensus 431 ~ 431 (485)
.
T Consensus 156 ~ 156 (187)
T PRK08287 156 Q 156 (187)
T ss_pred E
Confidence 3
No 124
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.58 E-value=6.4e-15 Score=129.47 Aligned_cols=98 Identities=24% Similarity=0.270 Sum_probs=81.7
Q ss_pred CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
++.+|||+|||+|..+..+++. +.+|+|+|+|++|++.|+++... ..+++++++|+.+. +. .++||+|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~--~~-~~~fDlV~~~~- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF--GQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC--CC-CCCccEEEEcc-
Confidence 4789999999999999999874 67999999999999999886543 23699999999884 33 67999999874
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+.+ .+.++++++++|+|||.+++...
T Consensus 121 ---~~~--~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 121 ---VAS--LSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ---ccC--HHHHHHHHHHhcCCCeEEEEEeC
Confidence 233 56899999999999999998643
No 125
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.58 E-value=3.9e-14 Score=133.68 Aligned_cols=97 Identities=28% Similarity=0.450 Sum_probs=81.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC----CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF----DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSR 356 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~----~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~ 356 (485)
..+..+|||+|||+|.++..+++.. +..++|+|+|+.|++.|+++.. ++.+.++|+.++|+++++||+|++.
T Consensus 83 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 83 DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----QVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----CCeEEEeecccCCCcCCceeEEEEe
Confidence 3455789999999999999988764 2479999999999999987743 6889999999999999999999986
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.+ +..+++++|+|||||++++..+.
T Consensus 159 ~~-------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 159 YA-------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred cC-------CCCHHHHHhhccCCCEEEEEeCC
Confidence 54 23468999999999999998644
No 126
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.57 E-value=2.7e-15 Score=129.40 Aligned_cols=155 Identities=27% Similarity=0.334 Sum_probs=116.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-C-CCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK-T-YPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~-~-~~~ 347 (485)
..+.+++......+=.++||+|||||-.+..+-.. -.+++|+|+|.+|+++|.++- ... +..++++... + ..+
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg--~YD--~L~~Aea~~Fl~~~~~ 186 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG--LYD--TLYVAEAVLFLEDLTQ 186 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc--chH--HHHHHHHHHHhhhccC
Confidence 66778888887777789999999999999888776 358999999999999998862 111 2233443322 1 346
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
++||+|++..|+.++.+.+.++--+...|+|||.+.|+.-....... + ...+....-++...++.+++..||+++
T Consensus 187 er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~---f--~l~ps~RyAH~~~YVr~~l~~~Gl~~i 261 (287)
T COG4976 187 ERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG---F--VLGPSQRYAHSESYVRALLAASGLEVI 261 (287)
T ss_pred CcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC---e--ecchhhhhccchHHHHHHHHhcCceEE
Confidence 78999999999999999999999999999999999999544333211 0 011111123567889999999999999
Q ss_pred EEeecch
Q 043471 428 IAEDRTE 434 (485)
Q Consensus 428 ~~~~~~~ 434 (485)
.+++.+.
T Consensus 262 ~~~~tti 268 (287)
T COG4976 262 AIEDTTI 268 (287)
T ss_pred Eeecccc
Confidence 9887553
No 127
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.57 E-value=6.3e-13 Score=128.84 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=91.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC----CCeEEEEccCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK----CSVEFEVADCTKKTYP 346 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~----~~i~~~~~d~~~~~~~ 346 (485)
++-+++.+....+.+|||+|||+|.++..++++. +.+|+++|+|+.+++.|++++.... .++++...|+.+. ++
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 4556777766556799999999999999999886 5799999999999999999875332 2678888887653 34
Q ss_pred CCCccEEEEcccccccC-----CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 347 ENSFDVIYSRDTILHIQ-----DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
..+||+|+|+..+|... ...++++.++++|+|||.+++..
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 56899999998886542 24578999999999999999984
No 128
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.56 E-value=3.5e-14 Score=131.10 Aligned_cols=146 Identities=16% Similarity=0.233 Sum_probs=103.4
Q ss_pred HHhccCC---CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCC
Q 043471 45 EVLSLLP---PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 45 ~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~ 118 (485)
.+++.+. ..++.+|||||||+|.++..|++.+.+|+|+|+|++|++.|+++.... .++++..+|+.. .+
T Consensus 51 ~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~~ 125 (230)
T PRK07580 51 TVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-----LL 125 (230)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-----cc
Confidence 4444443 356789999999999999999999889999999999999999875432 368999988543 35
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCC------CCc--cccCCCCCCCCChhHHHHHhhhc
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQ------SGD--SKRKHNPTHYREPRFYSKVFKEC 190 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~ 190 (485)
++||+|++..+++|++++....+++++.+.+++++.+.+....... ... ...........+...+..+++.+
T Consensus 126 ~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (230)
T PRK07580 126 GRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAA 205 (230)
T ss_pred CCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHC
Confidence 7899999999999998777889999999987655544432110000 000 00111122334667788899999
Q ss_pred ceecC
Q 043471 191 QIQDA 195 (485)
Q Consensus 191 ~~~~~ 195 (485)
||...
T Consensus 206 Gf~~~ 210 (230)
T PRK07580 206 GFKVV 210 (230)
T ss_pred CCceE
Confidence 98543
No 129
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.56 E-value=2.6e-14 Score=128.39 Aligned_cols=125 Identities=20% Similarity=0.254 Sum_probs=98.3
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccC-CCCC--CCCCCccEEEEcc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADC-TKKT--YPENSFDVIYSRD 357 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~-~~~~--~~~~~fD~i~~~~ 357 (485)
++.+|||+|||+|..+..+++.. +.+++|+|+|+.+++.|+++....+ .++.++++|+ ..++ +++++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56799999999999999998875 5689999999999999998876433 4799999998 6655 6678999999976
Q ss_pred cccccC--------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 358 TILHIQ--------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 358 ~~~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
...+.. ....++++++++|||||.+++..... .....+.+.+++.|+.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------------------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--------------------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--------------------HHHHHHHHHHHhCccccc
Confidence 543321 25789999999999999999974211 013457788888888654
No 130
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=4.7e-14 Score=127.11 Aligned_cols=111 Identities=22% Similarity=0.304 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTY 345 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~ 345 (485)
.....+++.+.+.++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.|++++...+ .++++..+|+.+...
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 345677788888889999999999999999888865 3699999999999999999886443 468999999987544
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...+||+|++..++++++ +++.+.|+|||++++..
T Consensus 139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 557899999999887765 47889999999998863
No 131
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.56 E-value=5.2e-14 Score=135.38 Aligned_cols=147 Identities=12% Similarity=0.236 Sum_probs=110.8
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~ 118 (485)
+.+++.+...++.+|||||||+|.++..++++. .+++++|. +.+++.++++... .++++++.+|+.+.+ ++
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--~~- 214 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--YP- 214 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--CC-
Confidence 445566666777899999999999999999984 58999997 7899998876543 247999999987633 33
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc-c--------CC---CCCCCCChhHHHHH
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK-R--------KH---NPTHYREPRFYSKV 186 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-~--------~~---~~~~~~~~~~~~~~ 186 (485)
.+|+|+++.++|+++++....++++++++|+|||.+++.+.......... . .. ........+.|.++
T Consensus 215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 293 (306)
T TIGR02716 215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEI 293 (306)
T ss_pred -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHH
Confidence 36999999999999876678899999999999999999987554322110 0 00 01122346789999
Q ss_pred hhhcceecC
Q 043471 187 FKECQIQDA 195 (485)
Q Consensus 187 ~~~~~~~~~ 195 (485)
++++||+.+
T Consensus 294 l~~aGf~~v 302 (306)
T TIGR02716 294 LESLGYKDV 302 (306)
T ss_pred HHHcCCCee
Confidence 999999654
No 132
>PRK14967 putative methyltransferase; Provisional
Probab=99.56 E-value=2.6e-13 Score=124.23 Aligned_cols=143 Identities=22% Similarity=0.227 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
..+...+..+.+.++.+|||+|||+|.++..+++....+++++|+|+.+++.+++++...+.++.+..+|+.+. +++++
T Consensus 23 ~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~ 101 (223)
T PRK14967 23 QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRP 101 (223)
T ss_pred HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCC
Confidence 44556666667788899999999999999998876323999999999999999998765444688888888763 45678
Q ss_pred ccEEEEcccccccCC---------------------HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCC
Q 043471 350 FDVIYSRDTILHIQD---------------------KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYD 408 (485)
Q Consensus 350 fD~i~~~~~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 408 (485)
||+|+++..+..-.. ...+++++.++|||||++++.....
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~------------------- 162 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL------------------- 162 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc-------------------
Confidence 999999854332211 3567889999999999998863221
Q ss_pred CCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 409 LHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 409 ~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
.....+.+.++..||.........
T Consensus 163 -~~~~~~~~~l~~~g~~~~~~~~~~ 186 (223)
T PRK14967 163 -SGVERTLTRLSEAGLDAEVVASQW 186 (223)
T ss_pred -cCHHHHHHHHHHCCCCeEEEEeec
Confidence 123466777888888765554433
No 133
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.56 E-value=7e-14 Score=115.71 Aligned_cols=112 Identities=17% Similarity=0.273 Sum_probs=90.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC-CCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK-TYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~-~~~~~ 348 (485)
...+++.+.+.++.+|||+|||+|.++..++++. +.+++++|+|+.+++.+++++...+ .+++++..|+... +...+
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 4456777777788899999999999999999876 4699999999999999998876443 3688888887652 22346
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+||+|++..... ...++++++++.|+|||++++..
T Consensus 88 ~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 899999976543 35689999999999999999874
No 134
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.55 E-value=3.3e-14 Score=125.54 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=100.6
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCee
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
..+...+...++.+|||+|||+|.++..+++.+.+|+|+|+|+++++.++++.... .+++++.+|+.+. ..++||
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~fD 84 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG----VRGKFD 84 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc----cCCccc
Confidence 34445555566789999999999999999998889999999999999999875422 2688888998652 245899
Q ss_pred EEEhhhhhhccChH-------------------HHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHH
Q 043471 123 MMFSNWLLMYLSDK-------------------EVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFY 183 (485)
Q Consensus 123 ~v~~~~~~~~~~~~-------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (485)
+|+++..+++.++. ....+++++.++|+|||.+++...... ....+
T Consensus 85 ~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------~~~~~ 149 (179)
T TIGR00537 85 VILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------GEPDT 149 (179)
T ss_pred EEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC---------------ChHHH
Confidence 99999776655431 146789999999999999999765332 24566
Q ss_pred HHHhhhccee
Q 043471 184 SKVFKECQIQ 193 (485)
Q Consensus 184 ~~~~~~~~~~ 193 (485)
...+++.||.
T Consensus 150 ~~~l~~~gf~ 159 (179)
T TIGR00537 150 FDKLDERGFR 159 (179)
T ss_pred HHHHHhCCCe
Confidence 7778887873
No 135
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.55 E-value=1.8e-14 Score=122.34 Aligned_cols=110 Identities=24% Similarity=0.259 Sum_probs=90.3
Q ss_pred CCCCCCCcEEEEcCCCCcchHHHH-hhcCcEEEEeCChHHHHHHHHHcCC--CCCeE-EEEeeccCCCCCCCCCCeeEEE
Q 043471 50 LPPYEGKTVLEFGAGIGRFTGELA-KKAGHVIALDFIDSVIKKNEEVNGH--FENVK-FMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 50 ~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~-~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
+.......|||||||||..-.+.- ..+..||++|++++|-+.+.+.+.+ ..++. |++++.++++. .++++||+|+
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~-l~d~s~DtVV 150 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ-LADGSYDTVV 150 (252)
T ss_pred hcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc-cccCCeeeEE
Confidence 344445579999999999988775 3588999999999999988876543 34666 99999998431 5899999999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+..++.-..+ ..+.|+++.|+|||||.+++-+-..
T Consensus 151 ~TlvLCSve~--~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 151 CTLVLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEEEEeccCC--HHHHHHHHHHhcCCCcEEEEEeccc
Confidence 9999988888 5699999999999999999976543
No 136
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.55 E-value=5.4e-14 Score=126.64 Aligned_cols=145 Identities=21% Similarity=0.227 Sum_probs=105.0
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--------------CCCeEEEE
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--------------FENVKFMC 106 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--------------~~~~~~~~ 106 (485)
+....+++.+...++.+||..|||.|.....|+++|++|+|+|+|+.+++.+.+.... .++|++.+
T Consensus 24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 3444555556667788999999999999999999999999999999999998554321 23689999
Q ss_pred eeccCCCCCCC-CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHH
Q 043471 107 ADVTSPDLTFS-EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSK 185 (485)
Q Consensus 107 ~d~~~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (485)
+|+.++ +.. .++||+|+-..+++-++.+.+.++.+.+.++|+|||.+++........ ....|.+..+.+.+.+
T Consensus 104 gDfF~l--~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~----~~~GPPf~v~~~ev~~ 177 (218)
T PF05724_consen 104 GDFFEL--PPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQG----EMEGPPFSVTEEEVRE 177 (218)
T ss_dssp S-TTTG--GGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CS----CSSSSS----HHHHHH
T ss_pred cccccC--ChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCc----CCCCcCCCCCHHHHHH
Confidence 999883 322 258999998888999988889999999999999999954443332211 1223444457888888
Q ss_pred Hhhhcce
Q 043471 186 VFKECQI 192 (485)
Q Consensus 186 ~~~~~~~ 192 (485)
+|. .+|
T Consensus 178 l~~-~~f 183 (218)
T PF05724_consen 178 LFG-PGF 183 (218)
T ss_dssp HHT-TTE
T ss_pred Hhc-CCc
Confidence 888 454
No 137
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.54 E-value=4.4e-14 Score=129.84 Aligned_cols=173 Identities=16% Similarity=0.251 Sum_probs=120.0
Q ss_pred HHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCC----CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCCh
Q 043471 11 EIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLP----PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFID 86 (485)
Q Consensus 11 ~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~ 86 (485)
+..-.||+.+.......++ .......+.+.+. ..++.+|||+|||+|.++..+++.+.+|+|+|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~ 77 (224)
T TIGR01983 7 ALAHEWWDPNGKFKPLHKM---------NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASE 77 (224)
T ss_pred HHHHHhcCCCCcHHHHHHh---------hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH
Confidence 4455678876655444333 1111122332222 23578999999999999999988888999999999
Q ss_pred HHHHHHHHHcCCCC--CeEEEEeeccCCCCCCC-CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 87 SVIKKNEEVNGHFE--NVKFMCADVTSPDLTFS-EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 87 ~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.+++.++++....+ ++++...|+.+. +.. .++||+|++..+++|+.+ ...+++++.++|+|||.+++......
T Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 78 ENIEVAKLHAKKDPLLKIEYRCTSVEDL--AEKGAKSFDVVTCMEVLEHVPD--PQAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred HHHHHHHHHHHHcCCCceEEEeCCHHHh--hcCCCCCccEEEehhHHHhCCC--HHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 99999988754322 588999988763 222 478999999999999988 56899999999999999998765432
Q ss_pred CCCccc-------------c-CCCCCCCCChhHHHHHhhhcceecCC
Q 043471 164 QSGDSK-------------R-KHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 164 ~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
...... . ......+.+...+.++++++||...+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 154 PKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred chHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 111000 0 00111233567788999999986544
No 138
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.54 E-value=6.8e-14 Score=124.52 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=100.3
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF 116 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~ 116 (485)
+.+..+++.+...++.+|||||||+|.++..+++++ .+|+++|+|+.+++.|+++... ..+++++.+|+.. ++
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~---~~ 94 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI---EL 94 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh---hc
Confidence 445556678887788999999999999999999874 5899999999999999876432 2478999888742 22
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
.++||+|++.....+ ...+++.+.++|+|||++++...... ..+.....+++.|+....
T Consensus 95 -~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~~---------------~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 95 -PGKADAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILLE---------------NLHSALAHLEKCGVSELD 153 (187)
T ss_pred -CcCCCEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecHh---------------hHHHHHHHHHHCCCCcce
Confidence 368999998765433 34688999999999999998654321 345566788888885443
No 139
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=9.7e-14 Score=125.57 Aligned_cols=111 Identities=30% Similarity=0.318 Sum_probs=93.1
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY 345 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~ 345 (485)
......+++.+.++++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|++++...+ .+++++.+|......
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 35667888888899999999999999999998887753 599999999999999999987544 379999999887655
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
+.++||+|++.....+++ +.+.+.|||||++++.
T Consensus 142 ~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence 668999999987765543 4677789999999886
No 140
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.53 E-value=4.2e-14 Score=117.02 Aligned_cols=113 Identities=25% Similarity=0.266 Sum_probs=89.7
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF 116 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~ 116 (485)
+.+..+++.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++... .++++++.+|+... ++.
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~ 84 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA-LED 84 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc-Chh
Confidence 45667788887777889999999999999999987 35899999999999999876432 24788988887642 222
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
..++||+|++..... ...++++++++.|+|||.+++..
T Consensus 85 ~~~~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 346899999875432 24589999999999999999864
No 141
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.53 E-value=3.4e-14 Score=124.80 Aligned_cols=97 Identities=26% Similarity=0.323 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
.++.+|||+|||+|.++..++..+ .+|+|+|+|++|++.+++.... ..+++++++|+.+. + .+++||+|++..
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~--~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF--Q-HEEQFDVITSRA 117 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc--c-ccCCccEEEehh
Confidence 358899999999999999998763 5899999999999888776432 24799999999873 2 357999999976
Q ss_pred hhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+++ ...+++.+.++|+|||.+++.
T Consensus 118 -~~~-----~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 -LAS-----LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -hhC-----HHHHHHHHHHhcCCCCEEEEE
Confidence 332 446888899999999999985
No 142
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.52 E-value=1.5e-13 Score=118.02 Aligned_cols=114 Identities=23% Similarity=0.401 Sum_probs=92.8
Q ss_pred hHHHHHHHHHcCCCC--CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccC-CCCCC
Q 043471 269 IETTKEFVAKLDLKP--GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADC-TKKTY 345 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~-~~~~~ 345 (485)
.++++..++.+.++. +.-|||||||+|-.+..+.+. |..++|+|+|+.|++.|.++.- .-.+..+|+ +.+||
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~----egdlil~DMG~Glpf 108 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVEREL----EGDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhh----hcCeeeeecCCCCCC
Confidence 367778888887766 568999999999988888877 7899999999999999987432 135667776 45799
Q ss_pred CCCCccEEEEcccccccC-------C----HHHHHHHHHhcCCCCcEEEEEec
Q 043471 346 PENSFDVIYSRDTILHIQ-------D----KPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~-------~----~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
..++||.|++..+++++- + ...++..++.+|++|++.+++.+
T Consensus 109 rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 109 RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 999999999998887762 2 33468889999999999999854
No 143
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.52 E-value=1.1e-13 Score=133.98 Aligned_cols=138 Identities=19% Similarity=0.139 Sum_probs=107.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
..+..++....++++.+|||+|||+|.++..++.. +..++|+|+++.|++.|++++...+ .++.+..+|+.++|++++
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence 34556666677889999999999999999887664 7899999999999999999886433 247889999999988788
Q ss_pred CccEEEEccccccc---------CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHH
Q 043471 349 SFDVIYSRDTILHI---------QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQML 419 (485)
Q Consensus 349 ~fD~i~~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 419 (485)
+||+|+++..+..- .-...+++++.++|||||++++..+. ..++.+++
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~-----------------------~~~~~~~~ 304 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT-----------------------RIDLESLA 304 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC-----------------------CCCHHHHH
Confidence 99999997543211 11478999999999999999887432 12456789
Q ss_pred HhCCCeEEEEeec
Q 043471 420 KDAGFVDIIAEDR 432 (485)
Q Consensus 420 ~~aGf~~~~~~~~ 432 (485)
+.+|| ++.....
T Consensus 305 ~~~g~-i~~~~~~ 316 (329)
T TIGR01177 305 EDAFR-VVKRFEV 316 (329)
T ss_pred hhcCc-chheeee
Confidence 99999 7665543
No 144
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.52 E-value=3.4e-13 Score=121.00 Aligned_cols=130 Identities=20% Similarity=0.292 Sum_probs=102.4
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCC-CCCCC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKK-TYPEN 348 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~-~~~~~ 348 (485)
..+..+.+.++.+|||+|||+|.++..++... +.+|+++|+++.+++.+++++...+ .++.++.+|..+. +...+
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 34577788899999999999999999888754 3699999999999999998876443 5788999888763 22246
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+||.|++.. ...+...+++++.++|||||++++... ...+...+.+.|++.||..
T Consensus 111 ~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~--------------------~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 111 KFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI--------------------LLETVNNALSALENIGFNL 165 (198)
T ss_pred CCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee--------------------cHHHHHHHHHHHHHcCCCe
Confidence 899999854 235678899999999999999987522 1123467888899999953
No 145
>PRK14968 putative methyltransferase; Provisional
Probab=99.52 E-value=3e-13 Score=120.76 Aligned_cols=134 Identities=25% Similarity=0.315 Sum_probs=102.5
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC-C--eEEEEccCCCCCCCCCCcc
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC-S--VEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~--i~~~~~d~~~~~~~~~~fD 351 (485)
+++.+...++.+|||+|||+|.++..++.. +.+++|+|+|+.+++.+++++...+. + +.++..|..+. +++.+||
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d 92 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFD 92 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCce
Confidence 344444467889999999999999999988 78999999999999999888753332 2 88888888663 4456899
Q ss_pred EEEEccccccc---------------------CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCC
Q 043471 352 VIYSRDTILHI---------------------QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLH 410 (485)
Q Consensus 352 ~i~~~~~~~~~---------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (485)
+|+++..+.+. .....+++++.++|||||.+++.... ..
T Consensus 93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~--------------------~~ 152 (188)
T PRK14968 93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS--------------------LT 152 (188)
T ss_pred EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc--------------------cC
Confidence 99997655331 11456899999999999999887321 12
Q ss_pred CHHHHHHHHHhCCCeEEEEe
Q 043471 411 DVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 411 ~~~~~~~~l~~aGf~~~~~~ 430 (485)
..+.+.++++++||++..+.
T Consensus 153 ~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 153 GEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CHHHHHHHHHHCCCeeeeee
Confidence 34678899999999887654
No 146
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.52 E-value=2.4e-14 Score=128.53 Aligned_cols=115 Identities=22% Similarity=0.308 Sum_probs=87.9
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeec-cCCCCCCCCC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADV-TSPDLTFSED 119 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~-~~~~~~~~~~ 119 (485)
.+.+.+.. ++.+|||+|||+|..+..+++. +.+|+|+|+|+++++.|+++... .++++++++|+ ..++..++++
T Consensus 32 ~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 110 (202)
T PRK00121 32 DWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDG 110 (202)
T ss_pred CHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCcc
Confidence 34444444 5779999999999999999887 45899999999999999886532 25799999999 6532225678
Q ss_pred CeeEEEhhhhhhccC------hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 120 SVDMMFSNWLLMYLS------DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~------~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+||+|+++....+.. ......+++++.++|+|||.+++...
T Consensus 111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 999999876543322 11145799999999999999999644
No 147
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.51 E-value=6.9e-14 Score=131.99 Aligned_cols=95 Identities=24% Similarity=0.369 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhc-----CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKA-----GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
.++.+|||+|||+|.++..|++.. .+|+|+|+|++|++.|+++. +++++.++|+.+ +|+++++||+|++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~--lp~~~~sfD~I~~~ 158 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHR--LPFADQSLDAIIRI 158 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeeccc--CCCcCCceeEEEEe
Confidence 455789999999999999988752 37999999999999998864 579999999987 67888999999986
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.+ + ..+++++|+|+|||++++..+.
T Consensus 159 ~~----~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 159 YA----P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred cC----C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 53 1 2467899999999999987554
No 148
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.51 E-value=5.5e-14 Score=122.80 Aligned_cols=145 Identities=25% Similarity=0.342 Sum_probs=113.2
Q ss_pred EEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC----CCCCCCccEEEEccc
Q 043471 286 KVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK----TYPENSFDVIYSRDT 358 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~i~~~~~ 358 (485)
+|||||||.|.....+.+.. +..+.++|.||.+++..+++..-...++...+.|+... |.+.+++|.|++..+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 89999999999999888765 37999999999999999988765455666666676553 456789999999999
Q ss_pred ccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCC-------hhHHHHHHhcCC--CCCCHHHHHHHHHhCCCeEE
Q 043471 359 ILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPS-------VEFSEYIKQRGY--DLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 359 ~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~l~~aGf~~~ 427 (485)
|..++ ....++++++++|||||.+++.|++...-... -..+-|....|. .+++.+++.+++.++||..+
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~ 233 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEV 233 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchh
Confidence 98883 68889999999999999999999876542110 011223333343 56899999999999999987
Q ss_pred EEe
Q 043471 428 IAE 430 (485)
Q Consensus 428 ~~~ 430 (485)
+..
T Consensus 234 ~~~ 236 (264)
T KOG2361|consen 234 QLE 236 (264)
T ss_pred ccc
Confidence 654
No 149
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.51 E-value=3.1e-13 Score=120.95 Aligned_cols=141 Identities=15% Similarity=0.205 Sum_probs=99.8
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCee
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
+.+.+.++ ++.+|||||||+|.++..+++. +.+++|+|+|+++++.+++ .+++++++|+.+...++++++||
T Consensus 5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-----~~~~~~~~d~~~~l~~~~~~sfD 77 (194)
T TIGR02081 5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-----RGVNVIQGDLDEGLEAFPDKSFD 77 (194)
T ss_pred HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-----cCCeEEEEEhhhcccccCCCCcC
Confidence 34455543 5679999999999999999765 6689999999999999876 35789999987521235678999
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC----------C-CCcccc-------CCCCCCCCChhHHH
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH----------Q-SGDSKR-------KHNPTHYREPRFYS 184 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~----------~-~~~~~~-------~~~~~~~~~~~~~~ 184 (485)
+|+++.+++|+++ ...+++++.|.+++ ++++.+... . .....+ ...+.++.+.+.+.
T Consensus 78 ~Vi~~~~l~~~~d--~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 152 (194)
T TIGR02081 78 YVILSQTLQATRN--PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFE 152 (194)
T ss_pred EEEEhhHhHcCcC--HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHH
Confidence 9999999999988 56899998887664 344322210 0 000000 11123345788899
Q ss_pred HHhhhcceecCC
Q 043471 185 KVFKECQIQDAS 196 (485)
Q Consensus 185 ~~~~~~~~~~~~ 196 (485)
++++++||....
T Consensus 153 ~ll~~~Gf~v~~ 164 (194)
T TIGR02081 153 DLCGELNLRILD 164 (194)
T ss_pred HHHHHCCCEEEE
Confidence 999999996533
No 150
>PLN03075 nicotianamine synthase; Provisional
Probab=99.51 E-value=2.3e-13 Score=126.31 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=90.4
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHH-Hhh-cC-CCEEEEEeCCHHHHHHHHHHhc---CCCCCeEEEEccCCCCCCCC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFY-MAD-KF-DVHVVGIDLSINMISFALERAI---GLKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~-l~~-~~-~~~v~g~D~s~~~~~~a~~~~~---~~~~~i~~~~~d~~~~~~~~ 347 (485)
.++..+...++.+|+|||||.|.++.. ++. .+ +.+++|+|+++++++.|++.+. ++..+++|..+|+.+.+...
T Consensus 114 ~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l 193 (296)
T PLN03075 114 DLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL 193 (296)
T ss_pred HHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc
Confidence 344444444778999999998855443 333 23 5699999999999999999883 55678999999998864334
Q ss_pred CCccEEEEccccccc--CCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 348 NSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+.||+|++. +++++ .++.++++++.+.|+|||.+++..
T Consensus 194 ~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 194 KEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 789999999 88888 689999999999999999999984
No 151
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=7.6e-14 Score=125.74 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=87.5
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDL 114 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~ 114 (485)
.....+++.+...++.+|||||||+|..+..+++. +.+|+|+|+++++++.|+++.... .+++++.+|..+.
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~-- 136 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG-- 136 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC--
Confidence 34566778888888899999999999999998876 368999999999999998865432 3589999998762
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
....++||+|++..++.+++ +++.+.|+|||.+++.
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 22457999999998877665 3578999999999885
No 152
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.50 E-value=1.3e-13 Score=120.43 Aligned_cols=112 Identities=26% Similarity=0.420 Sum_probs=88.5
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCC-eEEEEccCCCCCCCCCCc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCS-VEFEVADCTKKTYPENSF 350 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~-i~~~~~d~~~~~~~~~~f 350 (485)
.-+++.+...++.+|||+|||+|.++..++++. ..+|+++|+++.+++.+++++...+.. ++++..|..+. .++++|
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~f 99 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKF 99 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCE
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccce
Confidence 344444444467799999999999999999886 347999999999999999998755433 89999998764 346899
Q ss_pred cEEEEcccccccCC-----HHHHHHHHHhcCCCCcEEEEE
Q 043471 351 DVIYSRDTILHIQD-----KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 351 D~i~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~i~ 385 (485)
|+|+++..++.-.+ ...+++++.+.|||||.+++.
T Consensus 100 D~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 100 DLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp EEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 99999988765543 578899999999999999776
No 153
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.50 E-value=6.5e-13 Score=128.60 Aligned_cols=127 Identities=24% Similarity=0.299 Sum_probs=97.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCC-CCCccEEEEcccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP-ENSFDVIYSRDTI 359 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~i~~~~~~ 359 (485)
.++.+|||+|||+|.++..++... +.+++|+|+|+.+++.|++++...+.++++.++|+.+..++ .++||+|+|+...
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 456799999999999999988764 67999999999999999999876666899999998664332 4689999997643
Q ss_pred ccc---------------------CC----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHH
Q 043471 360 LHI---------------------QD----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKS 414 (485)
Q Consensus 360 ~~~---------------------~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (485)
..- .+ ...+++.+.+.|+|||.+++... ....+.
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG---------------------~~Q~e~ 388 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG---------------------FDQGAA 388 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC---------------------ccHHHH
Confidence 110 01 33567777889999999887621 123567
Q ss_pred HHHHHHhCCCeEEEE
Q 043471 415 YGQMLKDAGFVDIIA 429 (485)
Q Consensus 415 ~~~~l~~aGf~~~~~ 429 (485)
+.+++++.||..+.+
T Consensus 389 V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 389 VRGVLAENGFSGVET 403 (423)
T ss_pred HHHHHHHCCCcEEEE
Confidence 889999999987655
No 154
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.50 E-value=3.4e-13 Score=122.68 Aligned_cols=110 Identities=28% Similarity=0.321 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYP 346 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~ 346 (485)
.....+++.+.++++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++...+ .+++++.+|+......
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 3456788888889999999999999999999998753 469999999999999999987544 4799999999775444
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
..+||+|++.....++ .+.+.+.|+|||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEE
Confidence 5789999998766554 35678899999999886
No 155
>PTZ00146 fibrillarin; Provisional
Probab=99.50 E-value=1.2e-12 Score=121.04 Aligned_cols=150 Identities=18% Similarity=0.128 Sum_probs=99.4
Q ss_pred HHHHHHH---HHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-
Q 043471 270 ETTKEFV---AKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK- 343 (485)
Q Consensus 270 ~~~~~~~---~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~- 343 (485)
..+..++ +.+.++++.+|||+|||+|.++..+++..+ ..|+++|+|+.+.+...+..... .++.++..|+...
T Consensus 116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~ 194 (293)
T PTZ00146 116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQ 194 (293)
T ss_pred HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChh
Confidence 3444453 445688999999999999999999999873 58999999997654444333221 3788889998642
Q ss_pred --CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHh
Q 043471 344 --TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 344 --~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (485)
....++||+|++... ..++...++.++.++|||||.++|. +.............. ++ +++ +.|++
T Consensus 195 ~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~-ika~~id~g~~pe~~--------f~-~ev-~~L~~ 261 (293)
T PTZ00146 195 KYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS-IKANCIDSTAKPEVV--------FA-SEV-QKLKK 261 (293)
T ss_pred hhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE-EeccccccCCCHHHH--------HH-HHH-HHHHH
Confidence 223468999999764 2333445667999999999999995 221111000000000 11 234 78999
Q ss_pred CCCeEEEEeecc
Q 043471 422 AGFVDIIAEDRT 433 (485)
Q Consensus 422 aGf~~~~~~~~~ 433 (485)
+||++++..+..
T Consensus 262 ~GF~~~e~v~L~ 273 (293)
T PTZ00146 262 EGLKPKEQLTLE 273 (293)
T ss_pred cCCceEEEEecC
Confidence 999988776543
No 156
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.49 E-value=2.2e-14 Score=123.78 Aligned_cols=152 Identities=15% Similarity=0.183 Sum_probs=113.2
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
++..++++..+...+-.++||+|||||..+..|.......+|+|+|++|+++|.++-. --+..++|+..+--.....
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~---YD~L~~Aea~~Fl~~~~~e 187 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL---YDTLYVAEAVLFLEDLTQE 187 (287)
T ss_pred HHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc---hHHHHHHHHHHHhhhccCC
Confidence 3445566666666556799999999999999999999999999999999999988621 1234455554321113457
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
.||+|++..++.++.. .+.++.-+...|+|||.+.++.-........--.....+.+...+.+..++..|+..+.
T Consensus 188 r~DLi~AaDVl~YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 188 RFDLIVAADVLPYLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred cccchhhhhHHHhhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEE
Confidence 8999999999999998 77999999999999999999755443332222223334555778889999999985544
No 157
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.49 E-value=3.5e-13 Score=115.49 Aligned_cols=138 Identities=16% Similarity=0.179 Sum_probs=102.2
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHh-hcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAK-KAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
.+.+.+ ++|.||||+|||.|.+..+|.+ ++.+.+|+|++++.+..|.++ .++.+++|+.+--..|++++||.
T Consensus 6 ~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 6 IIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCccE
Confidence 344443 4589999999999999999987 488999999999999888884 78899999987423489999999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC------------Cccc------cCCCCCCCCChhHHHH
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS------------GDSK------RKHNPTHYREPRFYSK 185 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~------------~~~~------~~~~~~~~~~~~~~~~ 185 (485)
|+++.+++++.. .+.+|+++.|+ |...+++.+++..- .... -...+.++.+..-+..
T Consensus 79 VIlsqtLQ~~~~--P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~ 153 (193)
T PF07021_consen 79 VILSQTLQAVRR--PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFED 153 (193)
T ss_pred EehHhHHHhHhH--HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHH
Confidence 999999999988 45888888655 66788887775110 0000 0111233346667778
Q ss_pred Hhhhcceec
Q 043471 186 VFKECQIQD 194 (485)
Q Consensus 186 ~~~~~~~~~ 194 (485)
++.+.|+..
T Consensus 154 lc~~~~i~I 162 (193)
T PF07021_consen 154 LCRELGIRI 162 (193)
T ss_pred HHHHCCCEE
Confidence 888877744
No 158
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.49 E-value=5.4e-13 Score=124.13 Aligned_cols=120 Identities=25% Similarity=0.276 Sum_probs=89.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC--CeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC--SVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~--~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++....+. .+.+..+ +.+||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------~~~fD~Vvani~ 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------DLKADVIVANIL 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------CCCcCEEEEcCc
Confidence 457889999999999998887765333699999999999999998764321 2222111 227999999754
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
.+ ....+++++.++|||||+++++.... ...+.+.+.+++.||+++....
T Consensus 189 ~~---~~~~l~~~~~~~LkpgG~lilsgi~~--------------------~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 189 AN---PLLELAPDLARLLKPGGRLILSGILE--------------------EQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HH---HHHHHHHHHHHhcCCCcEEEEEECcH--------------------hhHHHHHHHHHHCCCEEEEEEE
Confidence 32 34678899999999999999985422 1346788999999999887654
No 159
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.49 E-value=8.2e-13 Score=123.65 Aligned_cols=138 Identities=25% Similarity=0.367 Sum_probs=104.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 347 (485)
.....+++.+. ..+.+|||+|||+|.++..+++.. +.+++|+|+++.+++.|++++...+ .++++..+|+.+ ++++
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~ 152 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPG 152 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcC
Confidence 34455555553 345699999999999999999875 5699999999999999999876433 258999999876 4567
Q ss_pred CCccEEEEcccccc------cC--------------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHH
Q 043471 348 NSFDVIYSRDTILH------IQ--------------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY 401 (485)
Q Consensus 348 ~~fD~i~~~~~~~~------~~--------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 401 (485)
++||+|+++..+.. +. ....+++++.++|+|||.+++...
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-------------- 218 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------------- 218 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC--------------
Confidence 89999999654332 10 123678999999999999988621
Q ss_pred HHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 402 IKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
....+.+.++|+++||+.+.+.
T Consensus 219 -------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 -------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred -------ccHHHHHHHHHHhCCCCceEEE
Confidence 1234678899999999877653
No 160
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.49 E-value=1.2e-13 Score=118.67 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=95.0
Q ss_pred cChhhhHHHhccCCCC--CCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC
Q 043471 38 LDKEERPEVLSLLPPY--EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT 115 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~ 115 (485)
++.+...+.++.+..+ ++.-|||||||+|..+..|...|+..+|+|+|+.|++.|.++.- .-.++.+|+.. .+|
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~---egdlil~DMG~-Glp 107 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVEREL---EGDLILCDMGE-GLP 107 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhh---hcCeeeeecCC-CCC
Confidence 3444455556665544 47789999999999999999999999999999999999997421 25788999874 589
Q ss_pred CCCCCeeEEEhhhhhh---------ccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 116 FSEDSVDMMFSNWLLM---------YLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~---------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
|+.++||-|++..++. |.+......++..++.+|++|+..++...
T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 9999999998876654 34444567889999999999999999754
No 161
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=2e-13 Score=123.53 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=89.2
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSP 112 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~ 112 (485)
..+.....+++.+...++.+|||||||+|..+..+++. + .+|+++|+++++++.|+++... ..+++++++|...
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~- 138 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL- 138 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-
Confidence 34455567888888889999999999999999998876 2 5999999999999999987643 2479999999876
Q ss_pred CCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 113 DLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
...+.+.||+|++.....+++ +.+.+.|+|||.+++.
T Consensus 139 -~~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 139 -GYEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred -CCCcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 333567899999877654443 3567789999999884
No 162
>PRK04266 fibrillarin; Provisional
Probab=99.47 E-value=4.6e-13 Score=121.49 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=94.5
Q ss_pred cCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC--CCCCCCCeeEE
Q 043471 49 LLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD--LTFSEDSVDMM 124 (485)
Q Consensus 49 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~D~v 124 (485)
.++..++.+|||+|||+|..+..+++.. .+|+|+|+++.|++.+.++.....|+.++.+|+.... .++ .++||+|
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i 145 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVI 145 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEE
Confidence 4777889999999999999999999873 5899999999999877666554468999999987521 112 3569999
Q ss_pred EhhhhhhccChH-HHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 125 FSNWLLMYLSDK-EVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 125 ~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
++.. +++ ....+++++.++|||||.++++-. .. ..+.+. .+. +..+...+.++++||+...
T Consensus 146 ~~d~-----~~p~~~~~~L~~~~r~LKpGG~lvI~v~-~~--~~d~~~-~~~--~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 146 YQDV-----AQPNQAEIAIDNAEFFLKDGGYLLLAIK-AR--SIDVTK-DPK--EIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred EECC-----CChhHHHHHHHHHHHhcCCCcEEEEEEe-cc--cccCcC-CHH--HHHHHHHHHHHHcCCeEEE
Confidence 8642 222 134578999999999999999522 11 100000 011 1123345888888986543
No 163
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.47 E-value=2.1e-13 Score=124.09 Aligned_cols=108 Identities=24% Similarity=0.274 Sum_probs=87.1
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC---cEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG---HVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~ 115 (485)
.....+++.+...++.+|||||||+|..+..|++... +|+++|+++++++.|+++.... .+++++.+|+... .
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~--~ 141 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG--W 141 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC--C
Confidence 3456788888888999999999999999999998844 4999999999999999876432 4799999998763 2
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
...++||+|++.....+++ +.+.+.|+|||++++.
T Consensus 142 ~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred cccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 2346899999876554443 4578899999999985
No 164
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.47 E-value=5.2e-13 Score=128.74 Aligned_cols=114 Identities=20% Similarity=0.247 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
-...+++.+......+|||+|||+|.++..++++. +.+++++|+|+.+++.|++++...+...++...|.... ..++
T Consensus 184 gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~ 261 (342)
T PRK09489 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGR 261 (342)
T ss_pred HHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCC
Confidence 44566676765555699999999999999999875 46999999999999999998875444566777777553 2578
Q ss_pred ccEEEEccccccc-----CCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 350 FDVIYSRDTILHI-----QDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 350 fD~i~~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
||+|+|+..+|+. .....+++++.+.|||||.+++..
T Consensus 262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 9999999998864 235788999999999999998874
No 165
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.47 E-value=3.4e-12 Score=114.58 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=112.5
Q ss_pred CCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc-------------CCCCC
Q 043471 266 TGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI-------------GLKCS 332 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~-------------~~~~~ 332 (485)
....+.+.+.+..+...++.+||..|||.|.-+.+|++. |.+|+|+|+|+.+++.+.+... ..+.+
T Consensus 26 ~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 26 ESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred CCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence 333455556666676667789999999999999999998 8899999999999999866321 11347
Q ss_pred eEEEEccCCCCCCC---CCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCC
Q 043471 333 VEFEVADCTKKTYP---ENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGY 407 (485)
Q Consensus 333 i~~~~~d~~~~~~~---~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 407 (485)
+++.++|+.+++.+ .++||+|+-..+|++++ .+.++++.+.++|+|||.+++...........+.
T Consensus 105 i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPP---------- 174 (226)
T PRK13256 105 IEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPP---------- 174 (226)
T ss_pred eEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCC----------
Confidence 89999999998632 26899999999999995 4788999999999999998887653321111110
Q ss_pred CCCCHHHHHHHHHhCCCeEEEE
Q 043471 408 DLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 408 ~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
...+.+++.+++.. +|++..+
T Consensus 175 f~v~~~e~~~lf~~-~~~i~~l 195 (226)
T PRK13256 175 YSVTQAELIKNFSA-KIKFELI 195 (226)
T ss_pred CcCCHHHHHHhccC-CceEEEe
Confidence 12356788888865 3554443
No 166
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.47 E-value=1e-12 Score=124.63 Aligned_cols=131 Identities=22% Similarity=0.246 Sum_probs=96.1
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCCCCcc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~fD 351 (485)
.+++.+ ..++.+|||+|||+|.++..+++....+|+|+|+++.+++.|+++.... ..++.+...+.. +..+++||
T Consensus 151 ~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fD 227 (288)
T TIGR00406 151 EWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKAD 227 (288)
T ss_pred HHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCce
Confidence 344444 3467899999999999998888653358999999999999999987633 334556655533 23457899
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
+|+++.... ....++.++.++|||||+++++.... ....++.+.+++. |+++....
T Consensus 228 lVvan~~~~---~l~~ll~~~~~~LkpgG~li~sgi~~--------------------~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 228 VIVANILAE---VIKELYPQFSRLVKPGGWLILSGILE--------------------TQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred EEEEecCHH---HHHHHHHHHHHHcCCCcEEEEEeCcH--------------------hHHHHHHHHHHcc-CceeeEec
Confidence 999976543 34678999999999999999985321 1245677777776 88876543
No 167
>PLN03075 nicotianamine synthase; Provisional
Probab=99.47 E-value=3e-13 Score=125.53 Aligned_cols=111 Identities=23% Similarity=0.188 Sum_probs=87.4
Q ss_pred HhccCCCCCCCcEEEEcCCCCcch-HHHHh-h--cCcEEEEeCChHHHHHHHHHcCC----CCCeEEEEeeccCCCCCCC
Q 043471 46 VLSLLPPYEGKTVLEFGAGIGRFT-GELAK-K--AGHVIALDFIDSVIKKNEEVNGH----FENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~G~~~-~~l~~-~--~~~v~giD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~~~~~~~ 117 (485)
++..+....+.+|+|||||.|.++ +.+++ . +.+++|+|+++++++.|++.... .++++|.++|+.+. +..
T Consensus 115 ~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~--~~~ 192 (296)
T PLN03075 115 LLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV--TES 192 (296)
T ss_pred HHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc--ccc
Confidence 344444447889999999988654 44443 3 45799999999999999997732 24799999999873 223
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
.+.||+|++. +++++..+...++++++.+.|+|||.+++..
T Consensus 193 l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 193 LKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 4789999999 8888865557899999999999999999964
No 168
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.46 E-value=5.8e-13 Score=119.49 Aligned_cols=132 Identities=19% Similarity=0.227 Sum_probs=98.7
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPD 113 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~ 113 (485)
.+.|...+..+...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++... ..++.++.+|+.+.
T Consensus 26 ~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~- 104 (198)
T PRK00377 26 EEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI- 104 (198)
T ss_pred HHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-
Confidence 455556678888889999999999999999998875 35899999999999999876432 24789999998653
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
++...+.||+|++... ... ...+++++.+.|+|||.+++...... ........+++.||
T Consensus 105 l~~~~~~~D~V~~~~~---~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~---------------~~~~~~~~l~~~g~ 163 (198)
T PRK00377 105 LFTINEKFDRIFIGGG---SEK--LKEIISASWEIIKKGGRIVIDAILLE---------------TVNNALSALENIGF 163 (198)
T ss_pred HhhcCCCCCEEEECCC---ccc--HHHHHHHHHHHcCCCcEEEEEeecHH---------------HHHHHHHHHHHcCC
Confidence 2222468999998541 222 56899999999999999988543221 23455666677776
No 169
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.45 E-value=2.1e-13 Score=119.02 Aligned_cols=112 Identities=26% Similarity=0.398 Sum_probs=86.2
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCc--EEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGH--VIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 119 (485)
+.+++.+...++.+|||+|||+|.++..+++.+.+ |+++|+++.+++.+++.... ..+++++.+|+.+. .+++
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~---~~~~ 97 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA---LPDG 97 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT---CCTT
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc---cccc
Confidence 34555555557889999999999999999998665 99999999999999886432 22489999998652 2468
Q ss_pred CeeEEEhhhhhhccCh---HHHHHHHHHHHhhcccCcEEEEE
Q 043471 120 SVDMMFSNWLLMYLSD---KEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+||+|+|+=.++.-.+ ....++++++.+.|+|||.+++.
T Consensus 98 ~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 98 KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 9999999955433332 23678999999999999999774
No 170
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.3e-12 Score=113.88 Aligned_cols=111 Identities=25% Similarity=0.343 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~~~~~~ 348 (485)
.+...+++.+.++++.+|||||||+|..+..+++..+ +|+.+|..+...+.|++++..++. |+.+.++|...=--+..
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 5788899999999999999999999999999998755 999999999999999999987763 79999999977433458
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+||.|+...+...+| +.+.+.|||||++++-.-
T Consensus 138 PyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 999999999887776 467788999999998743
No 171
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.45 E-value=4.1e-13 Score=129.30 Aligned_cols=117 Identities=19% Similarity=0.253 Sum_probs=93.8
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..+++.+....+..+||||||+|.++..+|++ ...++|+|+++.++..|.++... ..|+.++++|+..+...++++
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 45677777777789999999999999999998 46899999999999988876543 358999999997643346789
Q ss_pred CeeEEEhhhhhhccChHH----HHHHHHHHHhhcccCcEEEEEec
Q 043471 120 SVDMMFSNWLLMYLSDKE----VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~----~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++|.|+++....|...+. ...++.++.|+|+|||.+.+.+-
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 999999876554433211 25899999999999999999643
No 172
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.45 E-value=3.4e-13 Score=120.46 Aligned_cols=104 Identities=21% Similarity=0.347 Sum_probs=84.6
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC---CCCCCccEEEEcc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT---YPENSFDVIYSRD 357 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~---~~~~~fD~i~~~~ 357 (485)
...+|||||||+|.++..++++. +.+++|+|+++.+++.|++++...+ .+++++++|+.+++ ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45699999999999999999876 5799999999999999988865332 38999999997643 4556899999876
Q ss_pred cccccCC--------HHHHHHHHHhcCCCCcEEEEEe
Q 043471 358 TILHIQD--------KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 358 ~~~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...|.+. .+.+++++.++|||||.+++.+
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 5444322 2579999999999999999874
No 173
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.45 E-value=5.9e-13 Score=129.05 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=89.7
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC-----CCCeEEEEeeccCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH-----FENVKFMCADVTSPDLTF 116 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~~ 116 (485)
+-+++.++...+.+|||+|||+|.++..++++ ..+|+++|+|+.+++.|+++... ..+++++..|..+. +
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~---~ 294 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG---V 294 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc---C
Confidence 46778887766679999999999999999988 46899999999999999986421 12678888887542 2
Q ss_pred CCCCeeEEEhhhhhhc---cChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 117 SEDSVDMMFSNWLLMY---LSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+.++||+|+|+-.+|. +++....++++.+.+.|+|||.+++..
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3468999999865543 334446789999999999999999963
No 174
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.45 E-value=4.4e-12 Score=119.81 Aligned_cols=138 Identities=19% Similarity=0.220 Sum_probs=99.9
Q ss_pred HHHHHHHHH-cCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCC
Q 043471 270 ETTKEFVAK-LDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTY 345 (485)
Q Consensus 270 ~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~ 345 (485)
..+...+.. +...++.+|||+|||+|.++..+++.. +.+++|+|+|+.+++.|++++... ..+++++++|+.+. +
T Consensus 107 ~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~ 185 (284)
T TIGR03533 107 ELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-L 185 (284)
T ss_pred HHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-c
Confidence 334444442 323445799999999999999999876 579999999999999999998643 35799999998652 3
Q ss_pred CCCCccEEEEccccc-------------ccC------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH
Q 043471 346 PENSFDVIYSRDTIL-------------HIQ------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE 400 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~-------------~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 400 (485)
++++||+|+++.... |-+ ....+++++.+.|+|||++++...
T Consensus 186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g------------- 252 (284)
T TIGR03533 186 PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG------------- 252 (284)
T ss_pred CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-------------
Confidence 456899999973211 111 125678999999999999988731
Q ss_pred HHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 401 YIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
.+.+.+.+++.++||.-....
T Consensus 253 ---------~~~~~v~~~~~~~~~~~~~~~ 273 (284)
T TIGR03533 253 ---------NSMEALEEAYPDVPFTWLEFE 273 (284)
T ss_pred ---------cCHHHHHHHHHhCCCceeeec
Confidence 123467778888888665443
No 175
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.44 E-value=7e-13 Score=126.62 Aligned_cols=108 Identities=20% Similarity=0.305 Sum_probs=84.3
Q ss_pred CCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC-CC--CeEEEEeeccCC-CCCCC--CCCeeEE
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH-FE--NVKFMCADVTSP-DLTFS--EDSVDMM 124 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~-~~--~~~~~~~d~~~~-~~~~~--~~~~D~v 124 (485)
++.+|||+|||+|..+..|++. +.+|+|+|+|++|++.|+++... .+ ++.++++|+.+. +++.. .+...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 5678999999999999999887 57999999999999999887532 23 467789998763 22211 1133455
Q ss_pred EhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 125 FSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++..+++++++++..++++++++.|+|||.+++....
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 5667889998877889999999999999999985443
No 176
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.44 E-value=1.5e-12 Score=117.25 Aligned_cols=131 Identities=20% Similarity=0.272 Sum_probs=104.9
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCC--CCCCCccEEE
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKT--YPENSFDVIY 354 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~--~~~~~fD~i~ 354 (485)
......+|||+|||+|.++..++++. .++++|||+++.+.+.|++++. .+..++++++.|+.+.. ....+||+|+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 34447799999999999999999996 5899999999999999999886 46689999999998863 3345799999
Q ss_pred Eccccccc------------------CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHH
Q 043471 355 SRDTILHI------------------QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYG 416 (485)
Q Consensus 355 ~~~~~~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (485)
|+..+.-. -+.+++++.+.++|||||.+.+.. +.....++.
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~---------------------r~erl~ei~ 179 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH---------------------RPERLAEII 179 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe---------------------cHHHHHHHH
Confidence 98655432 147788999999999999999883 122345778
Q ss_pred HHHHhCCCeEEEEee
Q 043471 417 QMLKDAGFVDIIAED 431 (485)
Q Consensus 417 ~~l~~aGf~~~~~~~ 431 (485)
++|++.+|....+..
T Consensus 180 ~~l~~~~~~~k~i~~ 194 (248)
T COG4123 180 ELLKSYNLEPKRIQF 194 (248)
T ss_pred HHHHhcCCCceEEEE
Confidence 888888887766543
No 177
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.44 E-value=4.4e-12 Score=108.06 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=108.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
.-.-.+..|.+.++.+++|||||||.++..++... ..+++++|-++++++..++|...++ .++.++.+++.+.--...
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~ 101 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP 101 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC
Confidence 34456788899999999999999999999999433 5799999999999999999887554 689999999977532223
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCC-eEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGF-VDI 427 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-~~~ 427 (485)
++|.|+.... .+.+.+|+.+...|||||++++.-. .+.+.....+.+++.|+ +++
T Consensus 102 ~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nai--------------------tlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 102 SPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAI--------------------TLETLAKALEALEQLGGREIV 157 (187)
T ss_pred CCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEee--------------------cHHHHHHHHHHHHHcCCceEE
Confidence 7999999887 3678999999999999999998732 12245567788899999 555
Q ss_pred EE
Q 043471 428 IA 429 (485)
Q Consensus 428 ~~ 429 (485)
.+
T Consensus 158 ~v 159 (187)
T COG2242 158 QV 159 (187)
T ss_pred EE
Confidence 54
No 178
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.43 E-value=1.3e-12 Score=117.70 Aligned_cols=106 Identities=21% Similarity=0.301 Sum_probs=83.2
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC----
Q 043471 272 TKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT---- 344 (485)
Q Consensus 272 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~---- 344 (485)
..++.+.+. ++++.+|||+|||+|.++..+++..+ .+|+|+|+++ |. .. .+++++++|+.+.+
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~~-~~v~~i~~D~~~~~~~~~ 108 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------PI-VGVDFLQGDFRDELVLKA 108 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------CC-CCcEEEecCCCChHHHHH
Confidence 345555555 57888999999999999999998763 5999999988 21 11 26899999998853
Q ss_pred ----CCCCCccEEEEcccccccCCH-----------HHHHHHHHhcCCCCcEEEEEec
Q 043471 345 ----YPENSFDVIYSRDTILHIQDK-----------PALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 345 ----~~~~~fD~i~~~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+.+++||+|+|..+.++..++ ..+|+++.++|||||.+++..+
T Consensus 109 i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 109 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 567899999998766554332 4689999999999999999754
No 179
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.43 E-value=8.7e-13 Score=118.80 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=81.7
Q ss_pred HHhccCC-CCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC------
Q 043471 45 EVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL------ 114 (485)
Q Consensus 45 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~------ 114 (485)
++.+.+. ..++.+|||||||+|.++..+++.. .+|+|+|+++ | ...++++++++|+.+...
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~ 111 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLE 111 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHH
Confidence 3444444 4568899999999999999999873 5899999998 2 122579999999987421
Q ss_pred CCCCCCeeEEEhhhhhhccChHH---------HHHHHHHHHhhcccCcEEEEEec
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKE---------VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~---------~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++.+++||+|+|+.++++...+. ...+++++.++|+|||.+++..+
T Consensus 112 ~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 112 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 24568999999987766654321 24689999999999999999654
No 180
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=5.6e-12 Score=119.69 Aligned_cols=137 Identities=28% Similarity=0.371 Sum_probs=103.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc-CCCCCeEEEEccCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI-GLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~-~~~~~i~~~~~d~~~~~~~~~ 348 (485)
.++.++......++.+|||+|||+|.++..++... ..+++|+|+|+.+++.|++++. ....++.++.+|+... ++.+
T Consensus 96 l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~ 174 (275)
T PRK09328 96 LVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGG 174 (275)
T ss_pred HHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCC
Confidence 34445545556677899999999999999999876 5799999999999999999986 4445799999998653 3357
Q ss_pred CccEEEEccccccc--------------------------CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHH
Q 043471 349 SFDVIYSRDTILHI--------------------------QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYI 402 (485)
Q Consensus 349 ~fD~i~~~~~~~~~--------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 402 (485)
+||+|+++....-. .....+++++.++|+|||++++...
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g--------------- 239 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG--------------- 239 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---------------
Confidence 89999996432110 1135678889999999999998520
Q ss_pred HhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 403 KQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
....+.+.+++++.||..+.+
T Consensus 240 ------~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 240 ------YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred ------chHHHHHHHHHHhCCCceeEE
Confidence 112356888999999986655
No 181
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.1e-12 Score=119.45 Aligned_cols=135 Identities=29% Similarity=0.334 Sum_probs=97.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCC--eEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCS--VEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~--i~~~~~d~~~~~~~~~ 348 (485)
.-+.++.+ ..++.+|||+|||+|.+++..++. |+ +++|+|+.|.+++.|++++...+.. +.....+....+ ..+
T Consensus 152 cL~~Le~~-~~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~ 228 (300)
T COG2264 152 CLEALEKL-LKKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENG 228 (300)
T ss_pred HHHHHHHh-hcCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccC
Confidence 33444444 347889999999999999988876 55 7999999999999999998643322 223333333322 236
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+||+|+++=... -...+...+.+.|||||+++++..... -.+.+.+.++++||+++.
T Consensus 229 ~~DvIVANILA~---vl~~La~~~~~~lkpgg~lIlSGIl~~--------------------q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 229 PFDVIVANILAE---VLVELAPDIKRLLKPGGRLILSGILED--------------------QAESVAEAYEQAGFEVVE 285 (300)
T ss_pred cccEEEehhhHH---HHHHHHHHHHHHcCCCceEEEEeehHh--------------------HHHHHHHHHHhCCCeEeE
Confidence 999999975221 245778899999999999999953211 145788899999999987
Q ss_pred Eeec
Q 043471 429 AEDR 432 (485)
Q Consensus 429 ~~~~ 432 (485)
....
T Consensus 286 ~~~~ 289 (300)
T COG2264 286 VLER 289 (300)
T ss_pred EEec
Confidence 7543
No 182
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.43 E-value=3.3e-13 Score=120.52 Aligned_cols=107 Identities=21% Similarity=0.402 Sum_probs=83.5
Q ss_pred CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCC-CCCCCCCeeEEEhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPD-LTFSEDSVDMMFSNW 128 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~-~~~~~~~~D~v~~~~ 128 (485)
...+|||||||+|.++..++++ ..+|+|+|+++++++.|+++... .++++++++|+.++. ..++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999987 45899999999999998876432 358999999997632 114567999999886
Q ss_pred hhhccChH------HHHHHHHHHHhhcccCcEEEEEec
Q 043471 129 LLMYLSDK------EVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 129 ~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
...|.... ....+++++.++|||||.+++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 54443221 015799999999999999998643
No 183
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.42 E-value=6.8e-13 Score=116.01 Aligned_cols=160 Identities=22% Similarity=0.240 Sum_probs=108.6
Q ss_pred chHHHHHHHHHcCCC------CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC-CCCeEEEEccC
Q 043471 268 GIETTKEFVAKLDLK------PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL-KCSVEFEVADC 340 (485)
Q Consensus 268 ~~~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~i~~~~~d~ 340 (485)
...-.+.+++.+... ...+.||.|+|.|+++..+...+--+|..+|+.+..++.|++.+... ....++.+.-+
T Consensus 34 Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL 113 (218)
T PF05891_consen 34 DIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL 113 (218)
T ss_dssp HHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G
T ss_pred HHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH
Confidence 345566777776443 34689999999999999776655459999999999999999887642 23456777777
Q ss_pred CCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHH
Q 043471 341 TKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQM 418 (485)
Q Consensus 341 ~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (485)
++...+.++||+|++-+++.|+. |..++|+++...|+|||.+++-+........ .+. ...+.-..+.+.++++
T Consensus 114 Q~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~--~~D---~~DsSvTRs~~~~~~l 188 (218)
T PF05891_consen 114 QDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD--EFD---EEDSSVTRSDEHFREL 188 (218)
T ss_dssp GG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE--EEE---TTTTEEEEEHHHHHHH
T ss_pred hhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc--ccC---CccCeeecCHHHHHHH
Confidence 77654457999999999999996 5778999999999999999998765443210 000 0011123467889999
Q ss_pred HHhCCCeEEEEeec
Q 043471 419 LKDAGFVDIIAEDR 432 (485)
Q Consensus 419 l~~aGf~~~~~~~~ 432 (485)
+++||++++..+..
T Consensus 189 F~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 189 FKQAGLRLVKEEKQ 202 (218)
T ss_dssp HHHCT-EEEEEEE-
T ss_pred HHHcCCEEEEeccc
Confidence 99999999876543
No 184
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.42 E-value=1.5e-12 Score=126.23 Aligned_cols=135 Identities=21% Similarity=0.161 Sum_probs=103.1
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLT 115 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~ 115 (485)
+.+.....++......++.+|||+|||+|.++..++..+.+|+|+|+++.|++.|+++... ..++.++++|+.+ ++
T Consensus 166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~--l~ 243 (329)
T TIGR01177 166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK--LP 243 (329)
T ss_pred CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc--CC
Confidence 4455566677766777889999999999999988888899999999999999998876532 2358899999988 55
Q ss_pred CCCCCeeEEEhhhhhh-------ccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhh
Q 043471 116 FSEDSVDMMFSNWLLM-------YLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~-------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (485)
+++++||+|+++-.+. +.......++++++.++|+|||++++..+.. ..+...++
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~------------------~~~~~~~~ 305 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR------------------IDLESLAE 305 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC------------------CCHHHHHh
Confidence 5678999999973221 1111225789999999999999998865421 23456677
Q ss_pred hcce
Q 043471 189 ECQI 192 (485)
Q Consensus 189 ~~~~ 192 (485)
++|+
T Consensus 306 ~~g~ 309 (329)
T TIGR01177 306 DAFR 309 (329)
T ss_pred hcCc
Confidence 8787
No 185
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.41 E-value=3.4e-12 Score=115.98 Aligned_cols=111 Identities=23% Similarity=0.244 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
.....++..+.+.++.+|||+|||+|..+..+++.. .+++++|+++.+++.|++++...+ .++++..+|..+...+.+
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCC
Confidence 455677778888899999999999999998888764 599999999999999999886543 358999999865432347
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+||+|++...++++ .+.+.+.|+|||++++...
T Consensus 144 ~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 89999998876655 3567899999999998743
No 186
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.41 E-value=1e-12 Score=114.97 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=76.3
Q ss_pred cEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccCh
Q 043471 57 TVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSD 135 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~ 135 (485)
.++|+|||+|..++.++....+|+|+|+|+.|++.|++....- .+...-..+-...++.-.++++|+|+|..++|++.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd- 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD- 114 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc-
Confidence 8999999999889999999899999999999999998864311 12222222222233545589999999999999998
Q ss_pred HHHHHHHHHHHhhcccCc-EEEE
Q 043471 136 KEVEKLAERMVKWLKVGG-YIFF 157 (485)
Q Consensus 136 ~~~~~~l~~~~~~L~pgG-~l~~ 157 (485)
.++++++++|+||+.| .+.+
T Consensus 115 --le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 115 --LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred --hHHHHHHHHHHcCCCCCEEEE
Confidence 4579999999999988 5444
No 187
>PRK14968 putative methyltransferase; Provisional
Probab=99.41 E-value=3.1e-12 Score=114.14 Aligned_cols=133 Identities=19% Similarity=0.246 Sum_probs=98.5
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC--CC--eEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF--EN--VKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~--~~--~~~~~~d~~~~~~~~~~~ 119 (485)
..+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+++++.++++.... .+ +.++++|+.+. +..+
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~~~~ 89 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---FRGD 89 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---cccc
Confidence 34455555567889999999999999999999999999999999999988764321 22 88999987652 2455
Q ss_pred CeeEEEhhhhhhccC-------------------hHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCCh
Q 043471 120 SVDMMFSNWLLMYLS-------------------DKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREP 180 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (485)
+||+|+++..+...+ ......+++++.++|+|||.+++..... ...
T Consensus 90 ~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------~~~ 154 (188)
T PRK14968 90 KFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------TGE 154 (188)
T ss_pred CceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc---------------CCH
Confidence 899999865432211 1225678999999999999988864322 134
Q ss_pred hHHHHHhhhcceec
Q 043471 181 RFYSKVFKECQIQD 194 (485)
Q Consensus 181 ~~~~~~~~~~~~~~ 194 (485)
+.+...+.+.||..
T Consensus 155 ~~l~~~~~~~g~~~ 168 (188)
T PRK14968 155 DEVLEYLEKLGFEA 168 (188)
T ss_pred HHHHHHHHHCCCee
Confidence 56778888888754
No 188
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.41 E-value=3.6e-12 Score=106.27 Aligned_cols=137 Identities=22% Similarity=0.318 Sum_probs=106.2
Q ss_pred HHHHHHHHcC---CCCCC-EEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC
Q 043471 271 TTKEFVAKLD---LKPGQ-KVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK 343 (485)
Q Consensus 271 ~~~~~~~~~~---~~~~~-~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~ 343 (485)
.+..+.+... +.... +|||+|||.|.++..|++.. ...++|+|.|+.+++.|+..+. +..+.|+|.+.|+.+.
T Consensus 51 iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~ 130 (227)
T KOG1271|consen 51 IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP 130 (227)
T ss_pred HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC
Confidence 3344444433 34333 99999999999999999874 4469999999999999987765 4445599999999987
Q ss_pred CCCCCCccEEEEccccccc---CC-----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHH
Q 043471 344 TYPENSFDVIYSRDTILHI---QD-----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSY 415 (485)
Q Consensus 344 ~~~~~~fD~i~~~~~~~~~---~~-----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (485)
.+..++||+|+--.++-.+ ++ +...+..+.++|+|||+++|+.. -++.+++
T Consensus 131 ~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC---------------------N~T~dEL 189 (227)
T KOG1271|consen 131 DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC---------------------NFTKDEL 189 (227)
T ss_pred cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec---------------------CccHHHH
Confidence 7777899999987766554 12 34568889999999999999842 3467889
Q ss_pred HHHHHhCCCeEEE
Q 043471 416 GQMLKDAGFVDII 428 (485)
Q Consensus 416 ~~~l~~aGf~~~~ 428 (485)
.+.++..||+...
T Consensus 190 v~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 190 VEEFENFNFEYLS 202 (227)
T ss_pred HHHHhcCCeEEEE
Confidence 9999999997654
No 189
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.41 E-value=7.1e-12 Score=118.87 Aligned_cols=138 Identities=22% Similarity=0.280 Sum_probs=99.2
Q ss_pred HHHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCC
Q 043471 270 ETTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTY 345 (485)
Q Consensus 270 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~ 345 (485)
..+..+++.+. ..+..+|||+|||+|.++..++... +.+++|+|+|+.+++.|++++...+ .+++++.+|+.+ ++
T Consensus 100 ~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~ 178 (284)
T TIGR00536 100 ELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PL 178 (284)
T ss_pred HHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cC
Confidence 34444554442 2333699999999999999999876 4799999999999999999886433 359999999876 34
Q ss_pred CCCCccEEEEcc-------------cccccC------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH
Q 043471 346 PENSFDVIYSRD-------------TILHIQ------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE 400 (485)
Q Consensus 346 ~~~~fD~i~~~~-------------~~~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 400 (485)
+..+||+|+++. ++.|-+ ....+++++.+.|+|||++++....
T Consensus 179 ~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~------------ 246 (284)
T TIGR00536 179 AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN------------ 246 (284)
T ss_pred cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc------------
Confidence 445899999972 222222 2556789999999999999887321
Q ss_pred HHHhcCCCCCCHHHHHHHHH-hCCCeEEEE
Q 043471 401 YIKQRGYDLHDVKSYGQMLK-DAGFVDIIA 429 (485)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~-~aGf~~~~~ 429 (485)
.....+.+++. +.||..+.+
T Consensus 247 ---------~q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 247 ---------WQQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred ---------cHHHHHHHHHHhcCCCceeEE
Confidence 12345667777 468866544
No 190
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.40 E-value=6.9e-13 Score=108.53 Aligned_cols=103 Identities=25% Similarity=0.378 Sum_probs=84.9
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCC--CCCCCccEEEEcccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKT--YPENSFDVIYSRDTI 359 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~--~~~~~fD~i~~~~~~ 359 (485)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++.. ...++++.++|+.+.. +++++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999988547999999999999999998864 3457999999997764 678999999998877
Q ss_pred cccC--------CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 360 LHIQ--------DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 360 ~~~~--------~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.... ....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6431 24678999999999999998874
No 191
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2.3e-11 Score=111.73 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKKTYPEN 348 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~~~~~~ 348 (485)
-.+-+++.+....+.+|||+|||.|.++..+++.. ..+++-+|++..+++.|++++...+. +..+...|..+- .. +
T Consensus 146 GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-v~-~ 223 (300)
T COG2813 146 GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-VE-G 223 (300)
T ss_pred HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-cc-c
Confidence 35567788887777799999999999999999987 57999999999999999999875432 225666666553 33 3
Q ss_pred CccEEEEcccccccCC-----HHHHHHHHHhcCCCCcEEEEEe
Q 043471 349 SFDVIYSRDTILHIQD-----KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+||+|+|+..||--.+ -.+++++..+.|++||.|.|.-
T Consensus 224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 8999999999985532 2378999999999999998883
No 192
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.40 E-value=5.3e-12 Score=113.77 Aligned_cols=153 Identities=25% Similarity=0.348 Sum_probs=113.0
Q ss_pred CchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc---------C----CCCCe
Q 043471 267 GGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI---------G----LKCSV 333 (485)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~---------~----~~~~i 333 (485)
.....+.++++.+..+++.+||..|||.|.-+..|+++ |.+|+|+|+|+.+++.+.+... . ...+|
T Consensus 21 ~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 21 EPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp TSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 34467778888888888889999999999999999998 8899999999999999854321 0 12367
Q ss_pred EEEEccCCCCCCCC-CCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCC-ChhHHHHHHhcCCCC
Q 043471 334 EFEVADCTKKTYPE-NSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQRGYDL 409 (485)
Q Consensus 334 ~~~~~d~~~~~~~~-~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~ 409 (485)
++.++|+.+++... ++||+|+-..+|+.++ .+++..+.+.++|+|||.+++.......... .++ ..
T Consensus 100 ~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP----------f~ 169 (218)
T PF05724_consen 100 TIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP----------FS 169 (218)
T ss_dssp EEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS------------
T ss_pred EEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC----------CC
Confidence 89999998875433 5799999999999884 6889999999999999995444433222111 111 12
Q ss_pred CCHHHHHHHHHhCCCeEEEEee
Q 043471 410 HDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 410 ~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
.+.+++.+++. .+|++..++.
T Consensus 170 v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 170 VTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp --HHHHHHHHT-TTEEEEEEEE
T ss_pred CCHHHHHHHhc-CCcEEEEEec
Confidence 36788999998 8899887765
No 193
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.40 E-value=1.8e-12 Score=117.80 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=89.5
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLT 115 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~ 115 (485)
..+.....+++.+...++.+|||||||+|..+..+++.+.+|+++|+++++++.|+++... ..++++..+|..+. +
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~- 139 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG-W- 139 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC-C-
Confidence 3445566778888888899999999999999998888877999999999999999987543 24699999997652 2
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
...++||+|++...++++ .+.+.+.|+|||.+++...
T Consensus 140 ~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 234789999998765544 3457889999999998543
No 194
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.40 E-value=2.7e-12 Score=123.66 Aligned_cols=114 Identities=19% Similarity=0.297 Sum_probs=92.5
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC--CCCCC
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK--TYPEN 348 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~--~~~~~ 348 (485)
..+++.+....+..+||||||+|.++..+|.+. +..++|+|+++.+++.|.+++...+ .++.++++|+..+ .++++
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 356666666667799999999999999999986 5799999999999999988876433 4799999998654 46789
Q ss_pred CccEEEEcccccccCCH------HHHHHHHHhcCCCCcEEEEEe
Q 043471 349 SFDVIYSRDTILHIQDK------PALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~------~~~l~~~~~~LkpgG~l~i~~ 386 (485)
++|.|+++...-|...+ ..+++++.|+|+|||.+.+.+
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999986554443222 689999999999999999874
No 195
>PRK14967 putative methyltransferase; Provisional
Probab=99.39 E-value=2.8e-12 Score=117.38 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=85.5
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCee
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
..+..+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.... .+++++.+|+.+. +++++||
T Consensus 27 ~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~---~~~~~fD 103 (223)
T PRK14967 27 DALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA---VEFRPFD 103 (223)
T ss_pred HHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh---ccCCCee
Confidence 444445566788999999999999999998765 9999999999999988865322 2578888888652 3567999
Q ss_pred EEEhhhhhhccCh-------------------HHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 123 MMFSNWLLMYLSD-------------------KEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 123 ~v~~~~~~~~~~~-------------------~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+|+++-.+..... .....+++++.++|+|||.+++....
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999743221111 11456888999999999999985443
No 196
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.39 E-value=2e-12 Score=112.99 Aligned_cols=110 Identities=20% Similarity=0.213 Sum_probs=87.0
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
+.+++.+...++.+|||||||+|.++..+++++.+|+|+|+++.+++.++++....++++++.+|+.+ +++++.+||.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~--~~~~~~~~d~ 80 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALK--FDLPKLQPYK 80 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhc--CCccccCCCE
Confidence 56777787788889999999999999999999889999999999999999887655689999999988 4455667999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|+++- .+|+..+....+++.. .+.++|.+++.
T Consensus 81 vi~n~-Py~~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 81 VVGNL-PYNISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred EEECC-CcccHHHHHHHHHhcC--CCcceEEEEEE
Confidence 99874 4555543344444432 24588888775
No 197
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=1.5e-11 Score=117.31 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=80.4
Q ss_pred CEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCCCCccEEEEcccc--
Q 043471 285 QKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPENSFDVIYSRDTI-- 359 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~-- 359 (485)
.+|||+|||+|.++..++... +.+++++|+|+.+++.|++++... ..+++++++|+.+. +++++||+|+++...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 689999999999999999876 579999999999999999998643 34699999998652 345689999997321
Q ss_pred -----------cccCC------------HHHHHHHHHhcCCCCcEEEEE
Q 043471 360 -----------LHIQD------------KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 360 -----------~~~~~------------~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.|-+. ...+++++.+.|+|||++++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11111 256789999999999999886
No 198
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.39 E-value=6.8e-13 Score=108.58 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=83.7
Q ss_pred CCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
|.+|||+|||+|.++..+++.+ .+++|+|+++..++.++.+... .++++++++|+.+....+++++||+|+++-.+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5689999999999999999998 8999999999999999987543 24799999999874323678999999998654
Q ss_pred hccC-h-----HHHHHHHHHHHhhcccCcEEEEEec
Q 043471 131 MYLS-D-----KEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 131 ~~~~-~-----~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
.... . .....+++++.++|+|||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 3221 1 1256889999999999999988543
No 199
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.39 E-value=6.4e-12 Score=121.27 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=88.1
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 120 (485)
+.+++.++.....+|||+|||+|.++..+++++ .+|+++|+|+.+++.|+++....+ ..+++.+|+... ..++
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~----~~~~ 261 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD----IKGR 261 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc----cCCC
Confidence 456676766556689999999999999999884 489999999999999988654322 356677776541 2578
Q ss_pred eeEEEhhhhhhccC---hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 121 VDMMFSNWLLMYLS---DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 121 ~D~v~~~~~~~~~~---~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
||+|+|+-.+|+.. ....+++++++.+.|+|||.+++...
T Consensus 262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99999998777532 23467999999999999999998544
No 200
>PHA03411 putative methyltransferase; Provisional
Probab=99.38 E-value=7.4e-12 Score=114.40 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=97.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
.++.+|||+|||+|.++..++.+. +.+++|+|+++.|++.++++.. +++++++|+.+... +.+||+|+++..+.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----~v~~v~~D~~e~~~-~~kFDlIIsNPPF~ 137 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----EAEWITSDVFEFES-NEKFDVVISNPPFG 137 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----CCEEEECchhhhcc-cCCCcEEEEcCCcc
Confidence 345699999999999998888765 5799999999999999998753 68899999987653 46899999999988
Q ss_pred ccCC--------------------HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHH
Q 043471 361 HIQD--------------------KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLK 420 (485)
Q Consensus 361 ~~~~--------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (485)
+.+. ..++++...++|+|+|.+++.--..+ . | ..-.++++++++++
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~------~---y-----~~sl~~~~y~~~l~ 203 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP------Y---Y-----DGTMKSNKYLKWSK 203 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc------c---c-----cccCCHHHHHHHHH
Confidence 7521 24567777889999998877721110 0 0 12346889999999
Q ss_pred hCCCeE
Q 043471 421 DAGFVD 426 (485)
Q Consensus 421 ~aGf~~ 426 (485)
++||.-
T Consensus 204 ~~g~~~ 209 (279)
T PHA03411 204 QTGLVT 209 (279)
T ss_pred hcCcEe
Confidence 999964
No 201
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.38 E-value=7e-12 Score=109.84 Aligned_cols=101 Identities=21% Similarity=0.325 Sum_probs=77.1
Q ss_pred EEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC--CeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 286 KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC--SVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~--~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
.++|+|||+|..++.+++.+ -+|+|+|+|+.|++.|++....... .......++.++.-.+++.|+|+|..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 79999999998888888874 4999999999999999876542211 2233333344443347999999999999988
Q ss_pred CHHHHHHHHHhcCCCCc-EEEEEecc
Q 043471 364 DKPALFKSFFKWLKPGG-TVLISDYC 388 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG-~l~i~~~~ 388 (485)
|.+.++++++|+||+.| .+.+-.+.
T Consensus 114 dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 78999999999998876 55554443
No 202
>PTZ00146 fibrillarin; Provisional
Probab=99.37 E-value=4.5e-12 Score=117.21 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=79.5
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC-CCCCCCCeeE
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD-LTFSEDSVDM 123 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~D~ 123 (485)
+.+...++.+|||+|||+|..+.++++. + ..|+++|+|+.|.+.....+....|+.++.+|+.... ..++.++||+
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCE
Confidence 3456778899999999999999999998 3 4799999998755433333222268999999987531 2233468999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|++... .++ ....++.++.+.|||||++++.
T Consensus 206 V~~Dva---~pd-q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVA---QPD-QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCC---Ccc-hHHHHHHHHHHhccCCCEEEEE
Confidence 998763 222 2446777899999999999994
No 203
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.37 E-value=1.4e-11 Score=110.46 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=85.9
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC-CCCCCCc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK-TYPENSF 350 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~-~~~~~~f 350 (485)
.+++.+.+.++.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.+++++...+ .+++++.+|+.+. +.....+
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 46777788888999999999999999988654 5799999999999999999876433 3688998888542 2112346
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
|.|+... ..+...+++++.++|+|||++++...
T Consensus 111 d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 7765532 23568899999999999999999854
No 204
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.37 E-value=2.2e-12 Score=111.33 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=85.8
Q ss_pred EEEeCChHHHHHHHHHcCC-----CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcE
Q 043471 80 IALDFIDSVIKKNEEVNGH-----FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGY 154 (485)
Q Consensus 80 ~giD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 154 (485)
+|+|+|++|++.|+++... ..+++++++|+.+ +|+++++||+|++..+++|+++ ..+++++++|+|||||.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID--LPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSR 76 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh--CCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeE
Confidence 5899999999999876431 2379999999998 6788899999999999999987 66999999999999999
Q ss_pred EEEEeccCCCCCcc------------------ccCCCC--------CCCCChhHHHHHhhhcceecCC
Q 043471 155 IFFRESCFHQSGDS------------------KRKHNP--------THYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 155 l~~~~~~~~~~~~~------------------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
+++.+......... ...... ..+.+++.+.++++++||+...
T Consensus 77 l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~ 144 (160)
T PLN02232 77 VSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSAC 144 (160)
T ss_pred EEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcce
Confidence 99987764321100 000001 1233677788889999996654
No 205
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.36 E-value=5.6e-12 Score=120.43 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=81.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCC-CCCCCC----CccE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTK-KTYPEN----SFDV 352 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~-~~~~~~----~fD~ 352 (485)
.++.+|||+|||+|..+..+++.. +.+|+++|+|+.|++.|++++... ..++.++++|+.+ .+++.. ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 466799999999999999999886 579999999999999999887532 2356778999976 344332 2334
Q ss_pred EEEcccccccC--CHHHHHHHHHhcCCCCcEEEEE
Q 043471 353 IYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 353 i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
+++..++++++ +...+|++++++|+|||.++|.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 44456677774 4667899999999999999875
No 206
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.36 E-value=2.1e-12 Score=116.21 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=89.7
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhh-c-CcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCee
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKK-A-GHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
.........+|||+|||+|.+++.++++ . .+|+|||+.+.+.+.|++.... ..+++++++|+..+.-.....+||
T Consensus 38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 38 AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccC
Confidence 3444555789999999999999999998 4 7999999999999999987543 358999999999865445556899
Q ss_pred EEEhhhh----------------hhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 123 MMFSNWL----------------LMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 123 ~v~~~~~----------------~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|+||=- -+|...-..+++++.+.++|||||.+++...
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 9999721 1233333477999999999999999999543
No 207
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.7e-12 Score=111.06 Aligned_cols=108 Identities=23% Similarity=0.298 Sum_probs=91.9
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~ 119 (485)
....+++.+...++.+|||||||+|+.+..|++...+|+.+|..++..+.|++++... .|+..+++|...- + .+..
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G-~-~~~a 137 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG-W-PEEA 137 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC-C-CCCC
Confidence 5568889999999999999999999999999999889999999999999999986543 4799999998752 2 2457
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
.||.|+.......+|+ .+.+.|+|||++++-.
T Consensus 138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 138 PYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred CcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEE
Confidence 9999999887777765 3677899999999953
No 208
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.35 E-value=4.2e-12 Score=118.87 Aligned_cols=130 Identities=27% Similarity=0.339 Sum_probs=92.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~ 348 (485)
..++++.+ ..++.+|||+|||+|.+++..++. |+ +|+|+|++|.+++.|++++.- ...++.+ ....+ ...+
T Consensus 151 cl~~l~~~-~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~--~~~~ 224 (295)
T PF06325_consen 151 CLELLEKY-VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSED--LVEG 224 (295)
T ss_dssp HHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSC--TCCS
T ss_pred HHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecc--cccc
Confidence 33444444 566789999999999999988876 55 899999999999999999863 3344433 22222 2358
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+||+|+++=... -...++..+.++|+|||+++++.... ...+.+.+.+++ ||++++
T Consensus 225 ~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~--------------------~~~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 225 KFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGILE--------------------EQEDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp -EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEG--------------------GGHHHHHHHHHT-TEEEEE
T ss_pred cCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEccccH--------------------HHHHHHHHHHHC-CCEEEE
Confidence 999999975432 23567788999999999999995432 124677888877 999877
Q ss_pred Eee
Q 043471 429 AED 431 (485)
Q Consensus 429 ~~~ 431 (485)
...
T Consensus 281 ~~~ 283 (295)
T PF06325_consen 281 ERE 283 (295)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 209
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.35 E-value=2.6e-12 Score=114.76 Aligned_cols=112 Identities=27% Similarity=0.370 Sum_probs=88.0
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY 345 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~ 345 (485)
+.....+++.+.++++++|||||||+|..+..++...+ ..|+++|+.+..++.|++++..++ .++.++.+|...-..
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 46778899999999999999999999999998887654 379999999999999999987544 389999999866433
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...+||.|++..+...++ ..+.+.|++||++++--
T Consensus 138 ~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred cCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEE
Confidence 457899999998886554 45677899999998863
No 210
>PHA03411 putative methyltransferase; Provisional
Probab=99.35 E-value=8.6e-12 Score=113.95 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=98.7
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
...+.+|||+|||+|.++..++++ +.+|+|+|+++.|++.++++. ++++++++|+.+.. .+.+||+|+++-.
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D~~e~~---~~~kFDlIIsNPP 135 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITSDVFEFE---SNEKFDVVISNPP 135 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECchhhhc---ccCCCcEEEEcCC
Confidence 344679999999999999888776 469999999999999999864 47899999998743 3468999999887
Q ss_pred hhccChHH------------------HHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcc
Q 043471 130 LMYLSDKE------------------VEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQ 191 (485)
Q Consensus 130 ~~~~~~~~------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (485)
+++.+..+ +.++++....+|+|+|.+++.-... ...+.-..+..|+.++++.|
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~---------~~y~~sl~~~~y~~~l~~~g 206 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR---------PYYDGTMKSNKYLKWSKQTG 206 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc---------ccccccCCHHHHHHHHHhcC
Confidence 77754321 2456677788999999877752211 11122237889999999999
Q ss_pred eecCCC
Q 043471 192 IQDASG 197 (485)
Q Consensus 192 ~~~~~g 197 (485)
|....|
T Consensus 207 ~~~~~~ 212 (279)
T PHA03411 207 LVTYAG 212 (279)
T ss_pred cEecCC
Confidence 965544
No 211
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.35 E-value=4.4e-12 Score=113.69 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=86.7
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLT 115 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~ 115 (485)
.+.+..++..+...++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.++++... ..+++++.+|+.+. +.
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~-~~ 104 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC-LA 104 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH-Hh
Confidence 344455788888888899999999999999999875 46999999999999999886532 24789999998542 11
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.....+|.|+... ..+ ...+++++.+.|+|||.+++....
T Consensus 105 ~~~~~~d~v~~~~----~~~--~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 105 QLAPAPDRVCIEG----GRP--IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred hCCCCCCEEEEEC----CcC--HHHHHHHHHHhcCCCeEEEEEeec
Confidence 1123457665432 122 568999999999999999997553
No 212
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.34 E-value=6.3e-12 Score=116.95 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=83.5
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcCc-EEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAGH-VIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
..++.+|||+|||+|.++..+++.|.. |+|+|+|+.+++.|+++.... ++. .... ++..+.+||+|+++...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~-~~~-~~~~-----~~~~~~~fD~Vvani~~ 189 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN-GVE-LNVY-----LPQGDLKADVIVANILA 189 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc-CCC-ceEE-----EccCCCCcCEEEEcCcH
Confidence 346889999999999999988887764 999999999999999875432 221 0001 11112279999987432
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
.....++.++.++|+|||+++++..... ..+.+...+++.||..
T Consensus 190 -----~~~~~l~~~~~~~LkpgG~lilsgi~~~---------------~~~~v~~~l~~~Gf~~ 233 (250)
T PRK00517 190 -----NPLLELAPDLARLLKPGGRLILSGILEE---------------QADEVLEAYEEAGFTL 233 (250)
T ss_pred -----HHHHHHHHHHHHhcCCCcEEEEEECcHh---------------hHHHHHHHHHHCCCEE
Confidence 2256789999999999999999765321 3456777788888754
No 213
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.34 E-value=1.6e-11 Score=124.89 Aligned_cols=124 Identities=18% Similarity=0.269 Sum_probs=92.9
Q ss_pred CCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
+.+|||+|||+|.++..++... +.+++++|+|+.+++.|++++.. +..+++++.+|+.+. ++.++||+|+|+....
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCCC
Confidence 4689999999999999998765 67999999999999999999763 335789999997542 3456899999964221
Q ss_pred --------------ccC------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHH
Q 043471 361 --------------HIQ------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKS 414 (485)
Q Consensus 361 --------------~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (485)
|-+ ....+++++.++|+|||.+++.. . ....+.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g--------------------~~q~~~ 276 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-G--------------------FKQEEA 276 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-C--------------------CchHHH
Confidence 111 13446788899999999998862 1 112456
Q ss_pred HHHHHHhCCCeEEEE
Q 043471 415 YGQMLKDAGFVDIIA 429 (485)
Q Consensus 415 ~~~~l~~aGf~~~~~ 429 (485)
+.+++++.||..+.+
T Consensus 277 v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 277 VTQIFLDHGYNIESV 291 (506)
T ss_pred HHHHHHhcCCCceEE
Confidence 778888888876543
No 214
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.33 E-value=3.2e-12 Score=118.82 Aligned_cols=141 Identities=23% Similarity=0.314 Sum_probs=108.6
Q ss_pred HHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHH
Q 043471 12 IQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIK 90 (485)
Q Consensus 12 ~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~ 90 (485)
.+..|++.++....|++|+.|.-+ ....+..+++.-...+++.|||||||+|.++.+-|+.|+ +|+|+|.|.-+ +
T Consensus 21 ~~~~Yf~sY~~~~iheeML~D~VR---t~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~ 96 (346)
T KOG1499|consen 21 SDDYYFDSYAHFGIHEEMLKDSVR---TLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-D 96 (346)
T ss_pred hhhhhhhhhhchHHHHHHHhhhhh---HHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-H
Confidence 445667777777778888777543 335666777776778899999999999999999999986 89999988766 6
Q ss_pred HHHHHcC---CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccC-hHHHHHHHHHHHhhcccCcEEEEE
Q 043471 91 KNEEVNG---HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLS-DKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 91 ~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.|++... ....++++++.+++..+| .+++|+|++-|+-+++- +..+..++-.--+.|+|||.++-+
T Consensus 97 ~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 97 FARKIVKDNGLEDVITVIKGKVEDIELP--VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHHHHHhcCccceEEEeecceEEEecC--ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 6666532 223689999999996554 68999999988765543 333667777777999999988764
No 215
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=1.4e-11 Score=117.40 Aligned_cols=111 Identities=23% Similarity=0.310 Sum_probs=89.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYP 346 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~ 346 (485)
.....+++.+.++++.+|||+|||+|.++..+++..+ ..|+++|+++.+++.|++++...+ .++.++.+|+...+..
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 4556777888888899999999999999999998764 379999999999999999876443 4688999998776545
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.++||+|++...+.+++ ..+.+.|+|||++++..
T Consensus 147 ~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 FAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cCCccEEEECCchHHhH------HHHHHhcCCCCEEEEEe
Confidence 57899999986655442 35678999999988853
No 216
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.33 E-value=4.3e-12 Score=120.46 Aligned_cols=100 Identities=16% Similarity=0.267 Sum_probs=77.8
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
.++.+|||+|||+|.++..+++.|. +|+|+|+++.+++.|+++.... .++.+..++.. ...+++||+|+++.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~----~~~~~~fDlVvan~ 233 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE----QPIEGKADVIVANI 233 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc----cccCCCceEEEEec
Confidence 4578999999999999999888765 8999999999999999875421 24555555532 23457999999975
Q ss_pred hhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
... ....++.++.++|+|||+++++...
T Consensus 234 ~~~-----~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 234 LAE-----VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CHH-----HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 432 2457899999999999999997653
No 217
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.33 E-value=1.4e-11 Score=115.40 Aligned_cols=132 Identities=22% Similarity=0.346 Sum_probs=96.3
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~ 118 (485)
...+++.+. ..+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++++++.+|+.+. +++
T Consensus 77 ~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~ 152 (251)
T TIGR03534 77 VEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---LPG 152 (251)
T ss_pred HHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---CcC
Confidence 344455544 34568999999999999999987 56999999999999999886532 23699999998652 356
Q ss_pred CCeeEEEhhhhh------hccChH------------------HHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCC
Q 043471 119 DSVDMMFSNWLL------MYLSDK------------------EVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNP 174 (485)
Q Consensus 119 ~~~D~v~~~~~~------~~~~~~------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~ 174 (485)
++||+|+++-.+ +.+... ....+++++.++|+|||.+++...
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-------------- 218 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------------- 218 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC--------------
Confidence 899999985321 111111 124788999999999999998532
Q ss_pred CCCCChhHHHHHhhhcceec
Q 043471 175 THYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~ 194 (485)
+...+.+.+++++.||..
T Consensus 219 --~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFAD 236 (251)
T ss_pred --ccHHHHHHHHHHhCCCCc
Confidence 124567888888888744
No 218
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.32 E-value=1.3e-11 Score=119.71 Aligned_cols=120 Identities=22% Similarity=0.324 Sum_probs=89.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+ +++++++|+.+..++ ..++||+|+|+=
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~-~~~~FDLIVSNP-- 327 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP-SEGKWDIIVSNP-- 327 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc-cCCCccEEEECC--
Confidence 4569999999999999999875 5789999999999999998754323 799999998663222 245899999973
Q ss_pred hccCh-------------------------HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHH
Q 043471 131 MYLSD-------------------------KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSK 185 (485)
Q Consensus 131 ~~~~~-------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (485)
.+++. .-+..+++.+.+.|+|||.+++.. .. ...+.+.+
T Consensus 328 PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G~---------------~Q~e~V~~ 391 (423)
T PRK14966 328 PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-GF---------------DQGAAVRG 391 (423)
T ss_pred CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-Cc---------------cHHHHHHH
Confidence 22211 114477778889999999988732 21 14566778
Q ss_pred Hhhhcce
Q 043471 186 VFKECQI 192 (485)
Q Consensus 186 ~~~~~~~ 192 (485)
.+++.|+
T Consensus 392 ll~~~Gf 398 (423)
T PRK14966 392 VLAENGF 398 (423)
T ss_pred HHHHCCC
Confidence 8877776
No 219
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.32 E-value=5.7e-11 Score=110.14 Aligned_cols=137 Identities=16% Similarity=0.204 Sum_probs=97.4
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCC--C
Q 043471 271 TTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTY--P 346 (485)
Q Consensus 271 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~--~ 346 (485)
.++.++..+. ..++.+|||+|||+|.++..+++.. +.+++|+|+|+.+++.|++++...+ +++.++|+.+... .
T Consensus 73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~ 150 (251)
T TIGR03704 73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTAL 150 (251)
T ss_pred HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhc
Confidence 3344444333 2234589999999999999998765 5699999999999999999986543 5788888865311 1
Q ss_pred CCCccEEEEcccccc------c----------------CC----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH
Q 043471 347 ENSFDVIYSRDTILH------I----------------QD----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE 400 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~------~----------------~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 400 (485)
.++||+|+++....- + .| ...+++.+.++|+|||++++...
T Consensus 151 ~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~------------- 217 (251)
T TIGR03704 151 RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS------------- 217 (251)
T ss_pred CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-------------
Confidence 357999999864321 1 01 34677888899999999998731
Q ss_pred HHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 401 YIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
.....++.++|++.||+.....
T Consensus 218 --------~~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 218 --------ERQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred --------cchHHHHHHHHHHCCCCceeeE
Confidence 1123567888999999765443
No 220
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.31 E-value=9.9e-12 Score=105.92 Aligned_cols=114 Identities=27% Similarity=0.341 Sum_probs=93.2
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF 116 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~ 116 (485)
+.|...+..|.+.++++++|||||||..+..++.. ..+|+++|-++++++..+++... .+|+..+.+++.+. ++
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~-L~- 98 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA-LP- 98 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh-hc-
Confidence 55667789999999999999999999999999954 56999999999999887776443 46999999998764 22
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
...++|.|+..+. . . .+.+++.+...|||||.++..-...
T Consensus 99 ~~~~~daiFIGGg-~---~--i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 99 DLPSPDAIFIGGG-G---N--IEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CCCCCCEEEECCC-C---C--HHHHHHHHHHHcCcCCeEEEEeecH
Confidence 2237999999875 2 2 5679999999999999999976543
No 221
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=5.2e-11 Score=119.43 Aligned_cols=117 Identities=21% Similarity=0.313 Sum_probs=91.6
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--CCCCC
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--YPENS 349 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 349 (485)
...+..+...++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++...+.++++.++|+.+.+ ++.++
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 3445566778899999999999999999998763 69999999999999999998866656788999998753 34578
Q ss_pred ccEEEEcccc------cc------cCC----------HHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 350 FDVIYSRDTI------LH------IQD----------KPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 350 fD~i~~~~~~------~~------~~~----------~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
||.|++.... .+ ... ..++++.+.++|||||++++++...
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999964321 11 111 2468999999999999999886543
No 222
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.30 E-value=4.4e-11 Score=120.03 Aligned_cols=122 Identities=17% Similarity=0.224 Sum_probs=92.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeE--EEEccCCCCCC--C
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVE--FEVADCTKKTY--P 346 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~--~~~~d~~~~~~--~ 346 (485)
...+...+...++.+|||+|||+|..+..+++.. +.+++++|+++.+++.+++++...+..+. +..+|....+. +
T Consensus 227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 227 AQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence 3455566778889999999999999999999876 37999999999999999999875543333 35666654433 4
Q ss_pred CCCccEEEEc------ccccccCC----------------HHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 043471 347 ENSFDVIYSR------DTILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCKSFGT 393 (485)
Q Consensus 347 ~~~fD~i~~~------~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 393 (485)
.++||.|++. +++.+.++ ..++|+++.++|||||+++.++.......
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~E 375 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEE 375 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 5789999963 34544443 36789999999999999999976654433
No 223
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.29 E-value=5.4e-11 Score=103.90 Aligned_cols=109 Identities=15% Similarity=0.203 Sum_probs=87.9
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
+.+++.+.+.++.+|||+|||+|.++..++++ +.+++++|+++.+++.+++++.. ..+++++.+|+.+.++++.+||.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccccCCCE
Confidence 56778888888899999999999999999998 67999999999999999998865 34799999999998877777999
Q ss_pred EEEcccccccCCHHHHHHHHHhc--CCCCcEEEEEe
Q 043471 353 IYSRDTILHIQDKPALFKSFFKW--LKPGGTVLISD 386 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~--LkpgG~l~i~~ 386 (485)
|+++..++ + ....+..+.+. +.++|.++++.
T Consensus 81 vi~n~Py~-~--~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 81 VVGNLPYN-I--STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred EEECCCcc-c--HHHHHHHHHhcCCCcceEEEEEEH
Confidence 99976554 3 23444444432 45888888873
No 224
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.1e-11 Score=112.88 Aligned_cols=120 Identities=19% Similarity=0.272 Sum_probs=87.4
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCc-EEEEeCChHHHHHHHHHcCCCCCeE----EEEeeccCCCCCCCCCCeeEEEhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGH-VIALDFIDSVIKKNEEVNGHFENVK----FMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~----~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
.+|.+|||+|||+|.+++..++.|+. |+|+|+.|.+++.|+++... .++. ....+... . ...++||+|++|
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~-N~v~~~~~~~~~~~~~--~-~~~~~~DvIVAN 236 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARL-NGVELLVQAKGFLLLE--V-PENGPFDVIVAN 236 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHH-cCCchhhhcccccchh--h-cccCcccEEEeh
Confidence 37899999999999999999999885 99999999999999986543 1222 22222222 1 133699999998
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
- + .+ ....+...+++.|+|||+++++-.... ..+...+.+++.||....
T Consensus 237 I-L---A~-vl~~La~~~~~~lkpgg~lIlSGIl~~---------------q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 237 I-L---AE-VLVELAPDIKRLLKPGGRLILSGILED---------------QAESVAEAYEQAGFEVVE 285 (300)
T ss_pred h-h---HH-HHHHHHHHHHHHcCCCceEEEEeehHh---------------HHHHHHHHHHhCCCeEeE
Confidence 4 2 22 256889999999999999999864321 345566777777875443
No 225
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.29 E-value=7.4e-11 Score=102.91 Aligned_cols=163 Identities=19% Similarity=0.268 Sum_probs=115.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCC-
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYP- 346 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~- 346 (485)
.+.++++.+-...+.+|||||||||..+.++++.+ +....-.|+.+....-.+..+. ++..-..-+..|+.+.+.+
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 34455555533334369999999999999999988 6799999999888765555443 2222223345677665332
Q ss_pred -------CCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCC----ChhHHHHHHhc--CCCCCC
Q 043471 347 -------ENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTP----SVEFSEYIKQR--GYDLHD 411 (485)
Q Consensus 347 -------~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----~~~~~~~~~~~--~~~~~~ 411 (485)
.++||+|+|.+++|-.+ ..+.+|+.+.++|+|||.|++-.+....+.. ...|...++.. .+-+.+
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD 172 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRD 172 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccC
Confidence 35899999999998774 5678899999999999999998766554422 23344444432 234678
Q ss_pred HHHHHHHHHhCCCeEEEEeecc
Q 043471 412 VKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 412 ~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
.+++.++..++|++..+..++.
T Consensus 173 ~e~v~~lA~~~GL~l~~~~~MP 194 (204)
T PF06080_consen 173 IEDVEALAAAHGLELEEDIDMP 194 (204)
T ss_pred HHHHHHHHHHCCCccCcccccC
Confidence 8999999999999987665544
No 226
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.29 E-value=2.8e-11 Score=96.23 Aligned_cols=100 Identities=31% Similarity=0.494 Sum_probs=84.6
Q ss_pred EEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc-CCCCCeEEEEccCCCCCC-CCCCccEEEEcccccc-c
Q 043471 286 KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI-GLKCSVEFEVADCTKKTY-PENSFDVIYSRDTILH-I 362 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~~~i~~~~~d~~~~~~-~~~~fD~i~~~~~~~~-~ 362 (485)
+|+|+|||.|.++..+++..+.+++++|+++.+++.+++... ....++.+...|..+... ..++||+|++..++++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 489999999999999988446799999999999999984332 334578889999887653 4578999999999998 7
Q ss_pred CCHHHHHHHHHhcCCCCcEEEEE
Q 043471 363 QDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 363 ~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.....+++.+.+.|+|||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78899999999999999999876
No 227
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.29 E-value=4.1e-11 Score=113.24 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.... .+++++++|+.+. +++++||+|+++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~---~~~~~fD~Iv~N 196 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA---LPGRKYDLIVSN 196 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---cCCCCccEEEEC
Confidence 44578999999999999999987 469999999999999999875422 3699999998642 245689999986
Q ss_pred hh-------------hhccCh----------HHHHHHHHHHHhhcccCcEEEEE
Q 043471 128 WL-------------LMYLSD----------KEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 128 ~~-------------~~~~~~----------~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
=. ..|-+. .....+++++.+.|+|||.+++.
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 10 111111 12467899999999999999884
No 228
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=6.4e-11 Score=105.58 Aligned_cols=133 Identities=28% Similarity=0.428 Sum_probs=108.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYP 346 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~ 346 (485)
-+..++..+++.||++|||.|.|+|.++.+|+...+ .+|+..|+-++..+.|++|+. ++.+++++..+|+.+.-.+
T Consensus 82 D~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 82 DAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred CHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 355788889999999999999999999999997553 599999999999999999987 4556699999999887655
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+ .||+|+. -++++-.+++.++++|+|||.+++-.++-. -.....+.|++.||..
T Consensus 162 ~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ve--------------------Qv~kt~~~l~~~g~~~ 215 (256)
T COG2519 162 E-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVE--------------------QVEKTVEALRERGFVD 215 (256)
T ss_pred c-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHH--------------------HHHHHHHHHHhcCccc
Confidence 4 8999987 568999999999999999999988743211 1234456667778877
Q ss_pred EEE
Q 043471 427 IIA 429 (485)
Q Consensus 427 ~~~ 429 (485)
++.
T Consensus 216 ie~ 218 (256)
T COG2519 216 IEA 218 (256)
T ss_pred hhh
Confidence 654
No 229
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=5.8e-11 Score=119.39 Aligned_cols=116 Identities=26% Similarity=0.307 Sum_probs=92.3
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC----CC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT----YP 346 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~----~~ 346 (485)
.+...+...++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...+ .+++++++|+...+ +.
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence 34445677889999999999999999999875 3589999999999999999987554 36899999998765 34
Q ss_pred CCCccEEEEc------ccccccCC----------------HHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 347 ENSFDVIYSR------DTILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 347 ~~~fD~i~~~------~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
.++||.|++. +++.+-++ ..++|.++.++|||||+++.++...
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 5789999973 34443333 4678999999999999999886543
No 230
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.27 E-value=5e-11 Score=113.15 Aligned_cols=131 Identities=21% Similarity=0.274 Sum_probs=95.5
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..++..+...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++.. ...+++++.+|+... ++++
T Consensus 98 ~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~---~~~~ 174 (275)
T PRK09328 98 EWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP---LPGG 174 (275)
T ss_pred HHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc---CCCC
Confidence 344444455667899999999999999999874 799999999999999998754 234799999998542 2357
Q ss_pred CeeEEEhhhhh------hccC------------------hHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCC
Q 043471 120 SVDMMFSNWLL------MYLS------------------DKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPT 175 (485)
Q Consensus 120 ~~D~v~~~~~~------~~~~------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~ 175 (485)
+||+|+++-.. +.+. -.....+++++.++|+|||++++... .
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~------------- 240 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-Y------------- 240 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-c-------------
Confidence 99999986211 1011 01246788899999999999998421 1
Q ss_pred CCCChhHHHHHhhhccee
Q 043471 176 HYREPRFYSKVFKECQIQ 193 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~ 193 (485)
...+.+..++.+.||.
T Consensus 241 --~~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 241 --DQGEAVRALLAAAGFA 256 (275)
T ss_pred --hHHHHHHHHHHhCCCc
Confidence 1345577888887774
No 231
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.27 E-value=8.5e-12 Score=111.44 Aligned_cols=110 Identities=20% Similarity=0.265 Sum_probs=84.0
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPD 113 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~ 113 (485)
.+.....+++.+..++|.+|||||||+|+.+..|++. + ..|+++|+.+..++.|++++.. ..|+.++++|...-
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g- 135 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG- 135 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT-
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc-
Confidence 3456678999999999999999999999999999987 3 3699999999999999998653 34899999998752
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+ .....||.|++......++. .+.+.|++||++++-
T Consensus 136 ~-~~~apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 136 W-PEEAPFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAP 171 (209)
T ss_dssp T-GGG-SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEE
T ss_pred c-ccCCCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEE
Confidence 2 24568999999877655543 377789999999984
No 232
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.27 E-value=8.5e-11 Score=109.10 Aligned_cols=139 Identities=23% Similarity=0.275 Sum_probs=105.8
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCcc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 351 (485)
..+.+...+.+..+|||||+|+|.++..+++++ +.+++..|. |.+++.+++ ..+++++.+|+. .++|. +|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~~~P~--~D 160 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-DPLPV--AD 160 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-TCCSS--ES
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-hhhcc--cc
Confidence 455666677777899999999999999999988 789999999 888888887 458999999998 66765 99
Q ss_pred EEEEcccccccCC--HHHHHHHHHhcCCCC--cEEEEEecccCCCCCChhHH---HHH-----HhcCCCCCCHHHHHHHH
Q 043471 352 VIYSRDTILHIQD--KPALFKSFFKWLKPG--GTVLISDYCKSFGTPSVEFS---EYI-----KQRGYDLHDVKSYGQML 419 (485)
Q Consensus 352 ~i~~~~~~~~~~~--~~~~l~~~~~~Lkpg--G~l~i~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~l 419 (485)
+|+..+++|+.++ -..+|+++++.|+|| |+++|.+....+........ ... ...+...+|.++|.++|
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll 240 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALL 240 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHh
Confidence 9999999999964 557899999999999 99999998766655443322 111 01123456788888877
Q ss_pred H
Q 043471 420 K 420 (485)
Q Consensus 420 ~ 420 (485)
+
T Consensus 241 ~ 241 (241)
T PF00891_consen 241 K 241 (241)
T ss_dssp H
T ss_pred C
Confidence 4
No 233
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=2.7e-11 Score=115.35 Aligned_cols=111 Identities=20% Similarity=0.255 Sum_probs=85.5
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPD 113 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~ 113 (485)
++.....+++.+...++.+|||||||+|.++..+++.. ..|+|+|+++++++.|+++... ..++.++++|+..
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~-- 142 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY-- 142 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh--
Confidence 34445667788888888999999999999999999863 3699999999999999886532 2479999999876
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
.+...++||+|++.....+++ ..+.+.|+|||.+++..
T Consensus 143 ~~~~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GVPEFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 333446899999875444332 34678999999988853
No 234
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.26 E-value=6.8e-11 Score=110.38 Aligned_cols=171 Identities=16% Similarity=0.272 Sum_probs=117.0
Q ss_pred eEEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHh------ccccccCCch-HHHHHHHHHcCCCCC
Q 043471 212 AYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVF------GVGFVSTGGI-ETTKEFVAKLDLKPG 284 (485)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~ 284 (485)
..+...+......++...+....-..+..|+....... +..++..+. ...||++... +.+...+.. ..+.
T Consensus 40 i~~~~~k~~~l~~rl~~r~~~~g~~s~~~y~~~L~~~~-~~~e~~~li~~ltineT~FFRd~~~f~~L~~~~~~--~~~~ 116 (287)
T PRK10611 40 IVLADHKREMVYNRLVRRLRSLGLNDFGQYLALLESNQ-NSAEWQAFINALTTNLTAFFREAHHFPILAEHARR--RSGE 116 (287)
T ss_pred CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCC-CHHHHHHHHHHhhCCCCCccCCcHHHHHHHHHHHh--cCCC
Confidence 34555566667777777777777677888887765432 122333322 2345554432 333333322 1234
Q ss_pred CEEEEECCCCCh----hHHHHhhcC-----CCEEEEEeCCHHHHHHHHHHhc----------------------------
Q 043471 285 QKVLDVGCGIGG----GDFYMADKF-----DVHVVGIDLSINMISFALERAI---------------------------- 327 (485)
Q Consensus 285 ~~vLDiGcG~G~----~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~---------------------------- 327 (485)
.+|+..||+||. +++.+.+.. ..+|+|+|+|+.+++.|++-.-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 799999999995 444454432 3689999999999999986521
Q ss_pred ----CCCCCeEEEEccCCCCCCC-CCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEE
Q 043471 328 ----GLKCSVEFEVADCTKKTYP-ENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 328 ----~~~~~i~~~~~d~~~~~~~-~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.+...|.|.+.|+.+.+++ .+.||+|+|.+++.|++ ...++++++++.|+|||+|++.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0224678889999875543 57899999999999994 5888999999999999998876
No 235
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.26 E-value=7.8e-11 Score=105.57 Aligned_cols=139 Identities=21% Similarity=0.202 Sum_probs=96.6
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
..++||||+|.|.++..++..+. +|+++|.|+.|....+++ +++++ +..+..-.+.+||+|.|.+++-.-.
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~-~v~aTE~S~~Mr~rL~~k------g~~vl--~~~~w~~~~~~fDvIscLNvLDRc~ 165 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK-EVYATEASPPMRWRLSKK------GFTVL--DIDDWQQTDFKFDVISCLNVLDRCD 165 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc-eEEeecCCHHHHHHHHhC------CCeEE--ehhhhhccCCceEEEeehhhhhccC
Confidence 46899999999999999998764 899999999998777664 33433 3333332356899999999999889
Q ss_pred CHHHHHHHHHhcCCCCcEEEEEecccCCC-----C-CChhHHHHHHhcCCCC-CCHHHHHHHHHhCCCeEEEEee
Q 043471 364 DKPALFKSFFKWLKPGGTVLISDYCKSFG-----T-PSVEFSEYIKQRGYDL-HDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
+|..+|+.+++.|+|+|++++.-..+..+ . ....-.+.+...+..+ ...+.+.+.|+.+||+++.+..
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99999999999999999999884322110 0 0001111111111111 1123444899999999988754
No 236
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.7e-10 Score=108.30 Aligned_cols=121 Identities=23% Similarity=0.339 Sum_probs=91.2
Q ss_pred EEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 286 KVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
+|||+|||+|.++..++... .++|+|+|+|+.+++.|++++..++ .++.++.+|..+- . .++||+|+++...---.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-c-CCceeEEEeCCCCCCCc
Confidence 79999999999999999986 4699999999999999999988655 5566666665442 2 24899999984321100
Q ss_pred -------------------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHH
Q 043471 364 -------------------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQM 418 (485)
Q Consensus 364 -------------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (485)
-...++.++.+.|+|||.+++.. .+...+.+.++
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~---------------------g~~q~~~v~~~ 249 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI---------------------GLTQGEAVKAL 249 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE---------------------CCCcHHHHHHH
Confidence 14556888999999999998873 12235778899
Q ss_pred HHhCC-CeEEEE
Q 043471 419 LKDAG-FVDIIA 429 (485)
Q Consensus 419 l~~aG-f~~~~~ 429 (485)
+.+.| |..+..
T Consensus 250 ~~~~~~~~~v~~ 261 (280)
T COG2890 250 FEDTGFFEIVET 261 (280)
T ss_pred HHhcCCceEEEE
Confidence 99999 655443
No 237
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.24 E-value=5.2e-11 Score=94.62 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=81.8
Q ss_pred cEEEEcCCCCcchHHHHh-hcCcEEEEeCChHHHHHHHHHc--CCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhcc
Q 043471 57 TVLEFGAGIGRFTGELAK-KAGHVIALDFIDSVIKKNEEVN--GHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL 133 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~-~~~~v~giD~s~~~~~~a~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~ 133 (485)
+|+|+|||+|..+..+++ ...+++++|+++++++.+++.. ....+++++.+|+.+... ...++||+|+++.+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEccceeeh
Confidence 589999999999998887 4679999999999999888432 223578999999987432 245789999999988884
Q ss_pred ChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 134 SDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 134 ~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
......+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 223779999999999999999885
No 238
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.23 E-value=1.1e-10 Score=108.24 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh--
Q 043471 55 GKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL-- 130 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~-- 130 (485)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.... +++++++|+.+.......++||+|+++=-.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 458999999999999999876 568999999999999999876432 368899998653110113579999987311
Q ss_pred ----hccChH------------------HHHHHHHHHHhhcccCcEEEEEe
Q 043471 131 ----MYLSDK------------------EVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 131 ----~~~~~~------------------~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
..++++ ....+++.+.++|+|||.+++..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 111111 13478888889999999999853
No 239
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1.6e-10 Score=115.62 Aligned_cols=116 Identities=26% Similarity=0.393 Sum_probs=90.6
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC-CCCCCc
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT-YPENSF 350 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~-~~~~~f 350 (485)
+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...+ .++++.++|...++ +..++|
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccC
Confidence 3345577889999999999999999999876 4699999999999999999987554 25889999988765 445789
Q ss_pred cEEEEcccc---ccc---C----------------CHHHHHHHHHhcCCCCcEEEEEecccC
Q 043471 351 DVIYSRDTI---LHI---Q----------------DKPALFKSFFKWLKPGGTVLISDYCKS 390 (485)
Q Consensus 351 D~i~~~~~~---~~~---~----------------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 390 (485)
|.|++.... ..+ + ...++|.++.+.|||||.++.++....
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 999973221 111 1 135678999999999999999876543
No 240
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=5.9e-11 Score=119.08 Aligned_cols=120 Identities=19% Similarity=0.303 Sum_probs=89.6
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 120 (485)
......+.+.++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.++++....+ +++++++|+...+..++.++
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 345566777889999999999999999999874 589999999999999988765433 57899999876322134578
Q ss_pred eeEEEh----hh--hhh------cc-ChH-------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 121 VDMMFS----NW--LLM------YL-SDK-------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 121 ~D~v~~----~~--~~~------~~-~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
||.|++ +. ++. +. ... ...+++..+.++|||||.+++++.+..
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 999994 32 111 11 111 134789999999999999999876543
No 241
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.22 E-value=7e-11 Score=112.09 Aligned_cols=101 Identities=22% Similarity=0.380 Sum_probs=78.5
Q ss_pred CcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC--C-CCeEEEEeeccCCCCCCCCCCeeEEEhhh--
Q 043471 56 KTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH--F-ENVKFMCADVTSPDLTFSEDSVDMMFSNW-- 128 (485)
Q Consensus 56 ~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~~-- 128 (485)
.+|||+|||+|.++..++... .+|+|+|+|+++++.|+++... . .+++++++|+.+. ++.++||+|+++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---LAGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---CcCCCccEEEECCCC
Confidence 689999999999999999873 5899999999999999987532 2 2599999998652 2345899999961
Q ss_pred -----------hhhccCh----------HHHHHHHHHHHhhcccCcEEEEEe
Q 043471 129 -----------LLMYLSD----------KEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 129 -----------~~~~~~~----------~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+..|-+. .....+++++.+.|+|||++++..
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1222221 136688999999999999998853
No 242
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.22 E-value=2.1e-10 Score=104.61 Aligned_cols=136 Identities=24% Similarity=0.386 Sum_probs=104.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTY 345 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~ 345 (485)
.-+..++..+.+.||++|||.|.|+|.++..|+... ..+|+..|+.++..+.|++++. ++..++++.+.|+.+..+
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 345678889999999999999999999999999876 3599999999999999999987 455689999999986544
Q ss_pred C---CCCccEEEEcccccccCCHHHHHHHHHhcC-CCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHh
Q 043471 346 P---ENSFDVIYSRDTILHIQDKPALFKSFFKWL-KPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 346 ~---~~~fD~i~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (485)
. +..+|.|+. -++++-.++..+.++| ||||++++-.++-. -.....+.|++
T Consensus 107 ~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------------------Qv~~~~~~L~~ 161 (247)
T PF08704_consen 107 DEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIE--------------------QVQKTVEALRE 161 (247)
T ss_dssp STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH--------------------HHHHHHHHHHH
T ss_pred cccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHH--------------------HHHHHHHHHHH
Confidence 3 357999877 5689999999999999 89999987744321 13455677888
Q ss_pred CCCeEEEEe
Q 043471 422 AGFVDIIAE 430 (485)
Q Consensus 422 aGf~~~~~~ 430 (485)
.||..++..
T Consensus 162 ~gf~~i~~~ 170 (247)
T PF08704_consen 162 HGFTDIETV 170 (247)
T ss_dssp TTEEEEEEE
T ss_pred CCCeeeEEE
Confidence 999987653
No 243
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1.1e-10 Score=117.88 Aligned_cols=114 Identities=22% Similarity=0.274 Sum_probs=88.4
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCcc
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD 351 (485)
.+..+...++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...+ .++++.++|+...+ ++++||
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCC
Confidence 3345567788999999999999998888765 3599999999999999999887544 36899999998765 457899
Q ss_pred EEEEc------ccccccC----------------CHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 352 VIYSR------DTILHIQ----------------DKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 352 ~i~~~------~~~~~~~----------------~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
+|++- .++..-+ ....+|.++.+.|||||++++++...
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99962 1111111 13468999999999999999987554
No 244
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.21 E-value=1.2e-10 Score=100.89 Aligned_cols=129 Identities=20% Similarity=0.303 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCCC-CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKP-GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
..+..+++.+...| +..|-|+|||.+.++..+.. +.+|...|+-+. +-.+..+|+...|++++
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~--------------n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP--------------NPRVTACDIANVPLEDE 121 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S--------------STTEEES-TTS-S--TT
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccCC--------------CCCEEEecCccCcCCCC
Confidence 35667777775444 46899999999998876653 358999997332 22466799999999999
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+.|+++++.++.- .|...+++|+.|+|||||.|.|.+... ++.+.+...+.++..||+...
T Consensus 122 svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S------------------Rf~~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 122 SVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS------------------RFENVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp -EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG------------------G-S-HHHHHHHHHCTTEEEEE
T ss_pred ceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc------------------cCcCHHHHHHHHHHCCCeEEe
Confidence 9999999887754 589999999999999999999997643 344678888999999999887
Q ss_pred Eeecc
Q 043471 429 AEDRT 433 (485)
Q Consensus 429 ~~~~~ 433 (485)
.....
T Consensus 183 ~d~~n 187 (219)
T PF05148_consen 183 KDESN 187 (219)
T ss_dssp EE--S
T ss_pred cccCC
Confidence 54433
No 245
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.21 E-value=6.3e-11 Score=105.47 Aligned_cols=99 Identities=28% Similarity=0.356 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC------CCCCCCee
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL------TFSEDSVD 122 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~------~~~~~~~D 122 (485)
..++.+|||+|||+|.++..++++. .+|+|+|+|+.+ ..++++++++|+.+.+. .++.++||
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 4678899999999999999888763 369999999965 12578899999876321 13467899
Q ss_pred EEEhhhhhh--------ccC-hHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 123 MMFSNWLLM--------YLS-DKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 123 ~v~~~~~~~--------~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+|++..+.+ |.. ....+.++.++.++|+|||.+++..
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 999865422 111 1124689999999999999999953
No 246
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.21 E-value=1.9e-10 Score=102.39 Aligned_cols=97 Identities=25% Similarity=0.336 Sum_probs=74.6
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--------CCCCC
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--------YPENS 349 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 349 (485)
.++++.+|||+|||+|.++..++++. ..+++++|+|+.+ .. .++++.++|+.+.+ ++.++
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~----~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI----ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC----CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 46788999999999999999988875 3589999999865 11 25788888887642 45678
Q ss_pred ccEEEEccccc--------cc---CCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 350 FDVIYSRDTIL--------HI---QDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 350 fD~i~~~~~~~--------~~---~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
||+|++..+.+ |. .+...+++++.++|+|||++++..
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99999965321 11 123678999999999999999963
No 247
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.20 E-value=6.5e-11 Score=112.87 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.... .+++++++|+.+. + +.++||+|+++-.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l--~~~~fDlIvsNPP 210 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-L--PGRRYDLIVSNPP 210 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-C--CCCCccEEEECCC
Confidence 368999999999999999987 469999999999999999875422 3699999998642 2 3468999998610
Q ss_pred -------------hhccCh----------HHHHHHHHHHHhhcccCcEEEEE
Q 043471 130 -------------LMYLSD----------KEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 130 -------------~~~~~~----------~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
..|-+. .....+++++.++|+|||.+++.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111111 12467899999999999999984
No 248
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=99.20 E-value=3e-11 Score=116.13 Aligned_cols=246 Identities=29% Similarity=0.389 Sum_probs=167.1
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
..++.+++|+|||.|..+.+++.. +.+++|+|.++..+..+....... .+-.++.+|+-. .|++++.||.+.+.
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~--~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGK--MPFEDNTFDGVRFL 185 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhc--CCCCccccCcEEEE
Confidence 445668999999999999999987 689999999998888777653321 244558888877 77899999999999
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCCCCceeEEEeee
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASGNSFELSLVGY 207 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 207 (485)
.+..|.++ ...++++++|+++|||+.+..++...
T Consensus 186 d~~~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~~-------------------------------------------- 219 (364)
T KOG1269|consen 186 EVVCHAPD--LEKVYAEIYRVLKPGGLFIVKEWIKT-------------------------------------------- 219 (364)
T ss_pred eecccCCc--HHHHHHHHhcccCCCceEEeHHHHHh--------------------------------------------
Confidence 99999999 66999999999999999877433210
Q ss_pred eecceEEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHhccccccCCchHHHHHHHHHcCCCCCCEE
Q 043471 208 KCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKV 287 (485)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 287 (485)
..+ .++....
T Consensus 220 -------------------------------------~~~---------------------------------~~~~~~~ 229 (364)
T KOG1269|consen 220 -------------------------------------AKL---------------------------------KKPNSEH 229 (364)
T ss_pred -------------------------------------hhc---------------------------------cCCCccc
Confidence 000 0112245
Q ss_pred EEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-CCCCCCccEEEEcccccccCCHH
Q 043471 288 LDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK-TYPENSFDVIYSRDTILHIQDKP 366 (485)
Q Consensus 288 LDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~i~~~~~~~~~~~~~ 366 (485)
+|++||.+.--. +......+|.....+..+-.... ..-|+... +++..++|. ..++.|+++..
T Consensus 230 ~~i~~~i~~gd~-----~~~~~~~~d~~~~~~~~~~~~~~--------~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~ 293 (364)
T KOG1269|consen 230 VDILLEIEGGDA-----LPAETFNTDVFDLLKSFGFEHLK--------LEKDLALKSSFPWNTPLT---RDTITHWQDKS 293 (364)
T ss_pred ccccCceecccc-----ccceeccccHHHHHhhccchhhh--------hcccccCCCccccccccc---hhheeeccccc
Confidence 666666543211 11223333332222222211111 01122211 244566777 77788899999
Q ss_pred HHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHH
Q 043471 367 ALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFV 437 (485)
Q Consensus 367 ~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~ 437 (485)
.++......++|+|.+++.+...........+..++...........++. ||+.+.+.+.+....
T Consensus 294 ~~f~~~~~~~~~~~~v~~~e~~~~~p~gs~~~~~~~~~~~~~l~~~~e~~------gF~~~~~~~~~~k~~ 358 (364)
T KOG1269|consen 294 ALFRGRVATLKPGGKVLILEYIRGLPEGSSDFAKYIAQAAVGLKRGGETG------GFTPVDIEDVTDKPE 358 (364)
T ss_pred HHHHhHhhccCcCceEEehhhcCcCCcCcchHHHHHHhhhhhceeccccc------CcccceeeEccccch
Confidence 99999999999999999999888777777777777766554433333332 999999987776543
No 249
>PHA03412 putative methyltransferase; Provisional
Probab=99.19 E-value=4.1e-10 Score=100.62 Aligned_cols=137 Identities=15% Similarity=0.234 Sum_probs=88.8
Q ss_pred CCCcEEEEcCCCCcchHHHHhh-----cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK-----AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
.+.+|||+|||+|.++..++++ ..+|+|+|+++.+++.|++.. .++.++.+|+...+ + +++||+|++|=
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---~~~~~~~~D~~~~~--~-~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---PEATWINADALTTE--F-DTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---cCCEEEEcchhccc--c-cCCccEEEECC
Confidence 3679999999999999988874 358999999999999999865 46899999997633 2 56899999983
Q ss_pred hhh----------ccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCCC
Q 043471 129 LLM----------YLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASG 197 (485)
Q Consensus 129 ~~~----------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 197 (485)
-+. |........++..+.++++||+. ++-.......-+...............+..+.++-|+....|
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLEMNPG 200 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceeeccCcccHHHHHHHHhcCeeecCC
Confidence 222 11112245688888897777775 442221111111101110011124456677777777754443
No 250
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.19 E-value=2e-11 Score=105.49 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=113.8
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
-..++|||||.|.+...+....-.+++-+|.|..|++.++..- .....+....+|-+.++|.++++|+|+++.++||++
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N 151 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN 151 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence 3479999999999999988774238999999999999987642 223356677889999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCCcEEEEEecccCCCC---CChhHHHHHHhcC-----CCCCCHHHHHHHHHhCCCeEEEE--eecc
Q 043471 364 DKPALFKSFFKWLKPGGTVLISDYCKSFGT---PSVEFSEYIKQRG-----YDLHDVKSYGQMLKDAGFVDIIA--EDRT 433 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~aGf~~~~~--~~~~ 433 (485)
|.+..+.+++..|||+|.++-+-+....-. ....++..-...| .++....++..+|..|||.-+.+ .+..
T Consensus 152 dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtDEi~ 231 (325)
T KOG2940|consen 152 DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTDEIV 231 (325)
T ss_pred cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccccee
Confidence 999999999999999999876643322100 0011222222222 23445678999999999998655 3444
Q ss_pred hHHHH
Q 043471 434 EQFVQ 438 (485)
Q Consensus 434 ~~~~~ 438 (485)
..|..
T Consensus 232 v~Yp~ 236 (325)
T KOG2940|consen 232 VGYPR 236 (325)
T ss_pred ecCch
Confidence 45543
No 251
>PRK00811 spermidine synthase; Provisional
Probab=99.19 E-value=5.3e-11 Score=112.40 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=82.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh-c-CcEEEEeCChHHHHHHHHHcC-------CCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK-A-GHVIALDFIDSVIKKNEEVNG-------HFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
.++.+||+||||.|..+..+++. + .+|+++|+++++++.|++... ..++++++.+|+... +....++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~-l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF-VAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH-HhhCCCcccE
Confidence 45779999999999999999886 3 589999999999999998753 236899999998763 2224578999
Q ss_pred EEhhhhhhccChHH--HHHHHHHHHhhcccCcEEEEE
Q 043471 124 MFSNWLLMYLSDKE--VEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 124 v~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|++...-.+.+... ..++++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99865433332211 257899999999999998875
No 252
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=9.3e-11 Score=117.90 Aligned_cols=119 Identities=25% Similarity=0.296 Sum_probs=90.4
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCC--CC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLT--FS 117 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~--~~ 117 (485)
.+...+.+.+|.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++.... .+++++++|+...... ..
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence 3444567778999999999999999999886 258999999999999998875433 3789999999874211 33
Q ss_pred CCCeeEEEhh------hhhhccChH-------H-------HHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 118 EDSVDMMFSN------WLLMYLSDK-------E-------VEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 118 ~~~~D~v~~~------~~~~~~~~~-------~-------~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.++||+|++. +++.+-++. . ..+++.++.++|||||+++.++.+..
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 5789999952 344443321 1 35789999999999999998876553
No 253
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.18 E-value=2.6e-10 Score=106.81 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=87.4
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEE
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVI 353 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i 353 (485)
..+.++++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...+ .++.+...|....+...++||.|
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEE
Confidence 34567889999999999999999998876 3589999999999999999987554 36888899987765445679999
Q ss_pred EEcc------cccccC----------------CHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 354 YSRD------TILHIQ----------------DKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 354 ~~~~------~~~~~~----------------~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
++.. ++.+-+ ...++|+.+.++|||||+++.++..
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9732 121111 1345899999999999999988644
No 254
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.17 E-value=6.1e-11 Score=113.42 Aligned_cols=109 Identities=23% Similarity=0.330 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcC--------CCC----CeEEEEeeccCCCC--CCCC
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNG--------HFE----NVKFMCADVTSPDL--TFSE 118 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~--------~~~----~~~~~~~d~~~~~~--~~~~ 118 (485)
++.+|||+|||-|....-..+. -..++|+|+|+..|+.|++|.. ... ...|+.+|.....+ .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999876555444 5699999999999999999871 111 35677777764321 1233
Q ss_pred --CCeeEEEhhhhhhcc--ChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 119 --DSVDMMFSNWLLMYL--SDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 119 --~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
..||+|-|.+++||. +....+.+|+++.+.|+|||+++.+.+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 599999999999986 44557789999999999999999986653
No 255
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.17 E-value=9.6e-11 Score=109.82 Aligned_cols=116 Identities=22% Similarity=0.294 Sum_probs=82.5
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
..++.+|||+|||+|.+++..++.|+ +|+|+|++|.+++.|+++... ..++.. ....+ ...++||+|++|
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~----~~~~~~dlvvAN 232 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSED----LVEGKFDLVVAN 232 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSC----TCCS-EEEEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecc----cccccCCEEEEC
Confidence 45678999999999999999999987 699999999999999986432 223333 22112 235899999998
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
-. .......+..+.+.|+|||+++++-.... ..+.+.+.+++ ||..
T Consensus 233 I~-----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~---------------~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 233 IL-----ADVLLELAPDIASLLKPGGYLILSGILEE---------------QEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp S------HHHHHHHHHHCHHHEEEEEEEEEEEEEGG---------------GHHHHHHHHHT-TEEE
T ss_pred CC-----HHHHHHHHHHHHHhhCCCCEEEEccccHH---------------HHHHHHHHHHC-CCEE
Confidence 43 22256788889999999999999865422 34455666666 7743
No 256
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=1.7e-10 Score=116.33 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=90.9
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSP 112 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~ 112 (485)
.+.+........+...+|.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++.... .+++++++|+...
T Consensus 234 vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~ 313 (445)
T PRK14904 234 VQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF 313 (445)
T ss_pred EeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc
Confidence 33333344445667778899999999999999988875 458999999999999998876432 3689999999874
Q ss_pred CCCCCCCCeeEEEh----hh--hhh-------ccChHH-------HHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 113 DLTFSEDSVDMMFS----NW--LLM-------YLSDKE-------VEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 113 ~~~~~~~~~D~v~~----~~--~~~-------~~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
. ++++||+|++ ++ ++. +...+. ..+++.++.++|+|||+++.++.+..
T Consensus 314 ~---~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 314 S---PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred c---cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 4578999994 22 221 122211 23689999999999999999877654
No 257
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.9e-10 Score=105.82 Aligned_cols=131 Identities=20% Similarity=0.297 Sum_probs=95.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 119 (485)
+-+++.++...+.+|||+|||.|.++..+++... +++.+|++..+++.|++.... ..+..+...|+.+ +.. +
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~---~v~-~ 223 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE---PVE-G 223 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc---ccc-c
Confidence 5678888888777999999999999999999864 999999999999999997542 2233566666553 223 3
Q ss_pred CeeEEEhhhhhhccCh---HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 120 SVDMMFSNWLLMYLSD---KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
+||+|+||=-+|--.+ .-..+++....+.|++||.|.|.-.. +...+..+.+.|.++..
T Consensus 224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~--------------~l~y~~~L~~~Fg~v~~ 285 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR--------------HLPYEKKLKELFGNVEV 285 (300)
T ss_pred cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC--------------CCChHHHHHHhcCCEEE
Confidence 9999999855542221 11348999999999999999995331 11234566666665544
No 258
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=4.9e-10 Score=113.25 Aligned_cols=113 Identities=27% Similarity=0.371 Sum_probs=87.9
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPEN 348 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~ 348 (485)
.+...+.+.++.+|||+|||+|..+..+++.. +.+++++|+++.+++.+++++...+ .+++++++|+.+.+ ++ +
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~ 319 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-E 319 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-c
Confidence 33445667788999999999999999999875 4699999999999999999887544 35899999997753 33 6
Q ss_pred CccEEEEccc------ccccCC----------------HHHHHHHHHhcCCCCcEEEEEec
Q 043471 349 SFDVIYSRDT------ILHIQD----------------KPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 349 ~fD~i~~~~~------~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+||+|++... +.+-++ ...+++.+.++|||||+++.++.
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 8999998532 111111 24579999999999999987753
No 259
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.15 E-value=1.8e-10 Score=115.56 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=89.9
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCC---CeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFE---NVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~ 115 (485)
.....+...+.+.++.+|||+|||+|..+..+++. ..+|+|+|+++++++.++++....+ .+.+..+|.......
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 34445566678888999999999999999999886 3699999999999999988765332 234466665542211
Q ss_pred CCCCCeeEEEh----h--hhhhccChH--------------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 116 FSEDSVDMMFS----N--WLLMYLSDK--------------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 116 ~~~~~~D~v~~----~--~~~~~~~~~--------------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.+.++||+|++ + +++.+.++- ...+++.++.++|||||.++.++.+..
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 24578999984 2 345444431 135799999999999999999887764
No 260
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=1.5e-10 Score=115.66 Aligned_cols=122 Identities=19% Similarity=0.247 Sum_probs=90.0
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~ 115 (485)
.....+...+.+.+|.+|||+|||+|..+.++++. +.+|+++|+|+.+++.++++.... .+++++++|+..++ .
T Consensus 224 ~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~-~ 302 (431)
T PRK14903 224 ESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT-E 302 (431)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh-h
Confidence 33333444567778899999999999999999886 469999999999999999876433 36899999988732 1
Q ss_pred CCCCCeeEEEhh------hhhhccCh-------H-------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 116 FSEDSVDMMFSN------WLLMYLSD-------K-------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 116 ~~~~~~D~v~~~------~~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+.+++||.|++. +++..-++ . ...+.+.++.+.|||||.++.++.+..
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 345789999852 12221111 1 135679999999999999999877654
No 261
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.13 E-value=1e-10 Score=103.23 Aligned_cols=103 Identities=19% Similarity=0.415 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCCh----hHHHHhhc----C--CCEEEEEeCCHHHHHHHHHHhc-------------------------
Q 043471 283 PGQKVLDVGCGIGG----GDFYMADK----F--DVHVVGIDLSINMISFALERAI------------------------- 327 (485)
Q Consensus 283 ~~~~vLDiGcG~G~----~~~~l~~~----~--~~~v~g~D~s~~~~~~a~~~~~------------------------- 327 (485)
+..+|+.+||++|. +++.+.+. . ..+++|+|+|+.+++.|++-.-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45799999999994 44445541 1 3699999999999999985321
Q ss_pred ----CCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEE
Q 043471 328 ----GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 328 ----~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.+..+|.|...|+.+.+.+.+.||+|+|.+++.|++ ...++++.+++.|+|||.|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 122578999999988434568899999999999995 4678999999999999999987
No 262
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=2.2e-10 Score=115.70 Aligned_cols=117 Identities=25% Similarity=0.352 Sum_probs=87.0
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~ 119 (485)
.+...+...++.+|||+|||+|..+..+++. ..+|+|+|+++++++.++++.... .+++++++|+......++ +
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~ 319 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-E 319 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-c
Confidence 3445566777889999999999999999886 358999999999999998875432 368999999987422233 7
Q ss_pred CeeEEEhhhh------hhccCh-------HH-------HHHHHHHHHhhcccCcEEEEEeccC
Q 043471 120 SVDMMFSNWL------LMYLSD-------KE-------VEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 120 ~~D~v~~~~~------~~~~~~-------~~-------~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+||+|++... +.+-++ .. ...+++++.++|||||.++.+..+.
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 8999996421 111111 11 2468999999999999999876554
No 263
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.13 E-value=2.5e-10 Score=99.62 Aligned_cols=141 Identities=21% Similarity=0.201 Sum_probs=101.1
Q ss_pred CCcEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcC--CCCC-eEEEEeeccCCCCCCC------CCCeeE
Q 043471 55 GKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNG--HFEN-VKFMCADVTSPDLTFS------EDSVDM 123 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~--~~~~-~~~~~~d~~~~~~~~~------~~~~D~ 123 (485)
+.+|||||||||.++.++++.-. .-.-.|+.+....-.+.... ..+| ..-+..|+...+++.. .++||+
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 33799999999999999999844 55677888877544333221 1233 3556678877655543 568999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCc----------cccCCCC-CCCCChhHHHHHhhhcce
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD----------SKRKHNP-THYREPRFYSKVFKECQI 192 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~ 192 (485)
|+|.+++|.++....+.+++.+.++|+|||.|++--+-...+.. ..+.+++ +-+++.+.+..+..+.|+
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 99999999999888999999999999999999995433222211 1123343 667788888888888888
Q ss_pred ecC
Q 043471 193 QDA 195 (485)
Q Consensus 193 ~~~ 195 (485)
...
T Consensus 186 ~l~ 188 (204)
T PF06080_consen 186 ELE 188 (204)
T ss_pred ccC
Confidence 543
No 264
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.12 E-value=2.6e-10 Score=106.79 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=85.5
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCCCee
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
..+.+.++.+|||+|||+|..+..+++. ...|+++|+++.+++.++++.... .++.++..|+... +...++||
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~--~~~~~~fD 142 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF--GAAVPKFD 142 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh--hhhccCCC
Confidence 4456778899999999999999999876 358999999999999998875432 4789999998763 33446799
Q ss_pred EEEhh----h--hhhccC-------hH-------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 123 MMFSN----W--LLMYLS-------DK-------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 123 ~v~~~----~--~~~~~~-------~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+|++. + ++.+-+ .. ...++|+++.++|||||+|+.++.+..
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 99852 1 222111 11 124699999999999999998876543
No 265
>PRK04457 spermidine synthase; Provisional
Probab=99.12 E-value=1.8e-10 Score=107.38 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=85.6
Q ss_pred hhhHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCC
Q 043471 41 EERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDL 114 (485)
Q Consensus 41 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~ 114 (485)
+..+.++..+. ..++.+|||||||+|.++..+++. +.+|+++|+++++++.|++.... .++++++.+|+.+. +
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-l 130 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-I 130 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-H
Confidence 34444544333 345679999999999999999887 56899999999999999998653 25799999998653 1
Q ss_pred CCCCCCeeEEEhhhhh-hccChH-HHHHHHHHHHhhcccCcEEEEE
Q 043471 115 TFSEDSVDMMFSNWLL-MYLSDK-EVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~-~~~~~~-~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.-..++||+|++...- ...+.. ...++++++.+.|+|||.+++.
T Consensus 131 ~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 131 AVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 1123689999975311 111110 1258999999999999999995
No 266
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.12 E-value=4.3e-10 Score=104.37 Aligned_cols=111 Identities=25% Similarity=0.334 Sum_probs=90.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
..+.......+..+|||||+|.|.++..++++ +.+++..|+ |..++.+++ .++++++.+|+.+ ++ |. +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~-~~--P~--~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFD-PL--PV--A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTT-CC--SS--E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHh-hh--cc--c
Confidence 34455556666779999999999999999988 558999998 778888888 3799999999973 33 33 9
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccC--cEEEEEeccCCC
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVG--GYIFFRESCFHQ 164 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg--G~l~~~~~~~~~ 164 (485)
|+|+...++|+++++....+|+++++.|+|| |.|+|.+.....
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 9999999999999999999999999999999 999999887544
No 267
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3e-10 Score=106.61 Aligned_cols=113 Identities=21% Similarity=0.325 Sum_probs=85.8
Q ss_pred cEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc
Q 043471 57 TVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY 132 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~ 132 (485)
+|||+|||+|.+++.++.... +|+|+|+|+++++.|+++.... .++.++++|+.+. ..++||+|+|| ..|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~----~~~~fDlIVsN--PPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP----LRGKFDLIVSN--PPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc----cCCceeEEEeC--CCC
Confidence 799999999999999999865 9999999999999999875432 3566777776542 23599999998 333
Q ss_pred cChH-------------------------HHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHh
Q 043471 133 LSDK-------------------------EVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVF 187 (485)
Q Consensus 133 ~~~~-------------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (485)
++.+ ...+++.++.+.|+|||.+++.... . ..+...+++
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-~---------------q~~~v~~~~ 250 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-T---------------QGEAVKALF 250 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-C---------------cHHHHHHHH
Confidence 3322 3557888899999999998884331 1 356677888
Q ss_pred hhcc
Q 043471 188 KECQ 191 (485)
Q Consensus 188 ~~~~ 191 (485)
.+.+
T Consensus 251 ~~~~ 254 (280)
T COG2890 251 EDTG 254 (280)
T ss_pred HhcC
Confidence 8777
No 268
>PRK00811 spermidine synthase; Provisional
Probab=99.11 E-value=4.2e-10 Score=106.30 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=81.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCC------CCCeEEEEccCCCC-CCCCCCccEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGL------KCSVEFEVADCTKK-TYPENSFDVI 353 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~------~~~i~~~~~d~~~~-~~~~~~fD~i 353 (485)
+.+.+||+||||+|.++..+++..+ .+|+++|+++.+++.|++.+... ..+++++.+|+... ....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3456999999999999999987643 58999999999999999987531 45789999998653 2235789999
Q ss_pred EEcccccccCC----HHHHHHHHHhcCCCCcEEEEE
Q 043471 354 YSRDTILHIQD----KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 354 ~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~i~ 385 (485)
++...-.+.+. ..++++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99543222221 367889999999999998876
No 269
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.11 E-value=1e-09 Score=102.93 Aligned_cols=144 Identities=22% Similarity=0.216 Sum_probs=110.3
Q ss_pred cccCCc--hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEc-
Q 043471 263 FVSTGG--IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVA- 338 (485)
Q Consensus 263 ~~~~~~--~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~- 338 (485)
|+.+.. ++.++.++.....++|..|||-=||||+++....-- |++++|+|++..|++-|+.|+...+ ....+...
T Consensus 175 f~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~ 253 (347)
T COG1041 175 FFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVL 253 (347)
T ss_pred ccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcCceeEEEec
Confidence 444443 356677777778999999999999999999887754 9999999999999999999998664 34555555
Q ss_pred cCCCCCCCCCCccEEEEcccccc-----cCC----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCC
Q 043471 339 DCTKKTYPENSFDVIYSRDTILH-----IQD----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDL 409 (485)
Q Consensus 339 d~~~~~~~~~~fD~i~~~~~~~~-----~~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (485)
|+..+|+++.++|.|++-...-- ... ..++|+.+.++||+||++++..+
T Consensus 254 Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p---------------------- 311 (347)
T COG1041 254 DATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP---------------------- 311 (347)
T ss_pred ccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC----------------------
Confidence 99999998888999999533211 111 66789999999999999999843
Q ss_pred CCHHHHHHHHHhCCCeEEEEeec
Q 043471 410 HDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 410 ~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
......++.+||+++.....
T Consensus 312 ---~~~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 312 ---RDPRHELEELGFKVLGRFTM 331 (347)
T ss_pred ---CcchhhHhhcCceEEEEEEE
Confidence 11234566788988765443
No 270
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.11 E-value=2.4e-10 Score=104.81 Aligned_cols=111 Identities=24% Similarity=0.297 Sum_probs=84.8
Q ss_pred HHHhccC-CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC-
Q 043471 44 PEVLSLL-PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT- 115 (485)
Q Consensus 44 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~- 115 (485)
.+++..+ ...++.+|||||||+|..++.+++. ..+|+++|+++++++.|+++... ..+++++.+|+.+. ++
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-L~~ 135 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-LDQ 135 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHH
Confidence 3444433 4556789999999999999888875 45999999999999999987543 24799999999763 11
Q ss_pred ----CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 116 ----FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 116 ----~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
.+.++||+|++.. ..+.+..++..+.+.|+|||.+++...
T Consensus 136 l~~~~~~~~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHhCCCCCCCCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 1246899999853 223477899999999999999888544
No 271
>PRK04457 spermidine synthase; Provisional
Probab=99.11 E-value=6.5e-10 Score=103.70 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=82.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCC-CCCCCCccEEEEcc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKK-TYPENSFDVIYSRD 357 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~-~~~~~~fD~i~~~~ 357 (485)
.++.+|||||||+|.++..+++.. +.+++++|+++.+++.|++.+.. ...+++++.+|+.+. .-..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 346799999999999999998876 57999999999999999998753 236899999998553 21236899999852
Q ss_pred ccc--ccC---CHHHHHHHHHhcCCCCcEEEEEec
Q 043471 358 TIL--HIQ---DKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 358 ~~~--~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+. ..+ ...++++++.+.|+|||++++..+
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 22 111 237899999999999999998644
No 272
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.09 E-value=3.3e-10 Score=108.42 Aligned_cols=106 Identities=32% Similarity=0.424 Sum_probs=76.2
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc---------C--CCCCeEEEEccCCCC----CCCC
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI---------G--LKCSVEFEVADCTKK----TYPE 347 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~---------~--~~~~i~~~~~d~~~~----~~~~ 347 (485)
++.+|||+|||-|+-+.-....--..++|+|++...++.|+++.. . ..-...++.+|.... .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 678999999998876666555423599999999999999999982 1 112456677777543 1233
Q ss_pred --CCccEEEEccccccc-C---CHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 348 --NSFDVIYSRDTILHI-Q---DKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 348 --~~fD~i~~~~~~~~~-~---~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.+||+|-|..++||. . ....+|+++...|+|||+++.+.+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 599999999999998 2 2445899999999999999998654
No 273
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.09 E-value=6.7e-10 Score=98.10 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=97.6
Q ss_pred HHHHHHHHcCCCCC-CEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPG-QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 271 ~~~~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
.+..+++.+...++ ..|-|+|||.+.++. .....|+..|+-+ .+-.++.+|+.+.|+++++
T Consensus 167 Pld~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d~s 228 (325)
T KOG3045|consen 167 PLDVIIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA--------------VNERVIACDMRNVPLEDES 228 (325)
T ss_pred hHHHHHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeec--------------CCCceeeccccCCcCccCc
Confidence 46667777765554 578899999998665 2234788888722 1445678999999999999
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
.|+++++.++.- .|...++++++|+|+|||.+.|.+... ++.+...+...+...||.+...
T Consensus 229 vDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S------------------Rf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 229 VDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS------------------RFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred ccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh------------------hcccHHHHHHHHHHcCCeeeeh
Confidence 999999877643 589999999999999999999996432 4567778999999999998765
Q ss_pred eecc
Q 043471 430 EDRT 433 (485)
Q Consensus 430 ~~~~ 433 (485)
....
T Consensus 290 d~~n 293 (325)
T KOG3045|consen 290 DVSN 293 (325)
T ss_pred hhhc
Confidence 5443
No 274
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.09 E-value=6.9e-10 Score=99.56 Aligned_cols=124 Identities=17% Similarity=0.195 Sum_probs=93.7
Q ss_pred hhhhcCCCcCccChhhhHHHhccC-----CCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCC
Q 043471 27 EAMMLDSKASDLDKEERPEVLSLL-----PPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFEN 101 (485)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~ 101 (485)
|..+....-+-.+.+..++++..- +.....++||||+|.|..+..++....+|+++|.|+.|....+++ +
T Consensus 62 NG~LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----g 136 (265)
T PF05219_consen 62 NGILGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----G 136 (265)
T ss_pred hhhhcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----C
Confidence 444444444556666667777644 222457899999999999999999999999999999998777774 3
Q ss_pred eEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 102 VKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 102 ~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.+.+ +..+ +.-.+.+||+|.|.+++-...+ ....|+++++.|+|+|.++++-..
T Consensus 137 ~~vl--~~~~--w~~~~~~fDvIscLNvLDRc~~--P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 137 FTVL--DIDD--WQQTDFKFDVISCLNVLDRCDR--PLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred CeEE--ehhh--hhccCCceEEEeehhhhhccCC--HHHHHHHHHHHhCCCCEEEEEEEe
Confidence 3333 3333 2223568999999999998887 459999999999999999997543
No 275
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.08 E-value=1.4e-09 Score=109.76 Aligned_cols=112 Identities=25% Similarity=0.332 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC----C
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK----T 344 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~----~ 344 (485)
.....+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|++++...+ .+++++.+|+.+. +
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 34556667777778899999999999999999987 4799999999999999999876433 3699999998642 3
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+++++||+|++...-.- ....++.+.+ ++|++.++++.
T Consensus 363 ~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 363 WALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 44568999998654322 3455666666 69999999984
No 276
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.08 E-value=6e-10 Score=96.52 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=81.5
Q ss_pred CccChhhhHHHhccCCCCC-CCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC
Q 043471 36 SDLDKEERPEVLSLLPPYE-GKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL 114 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~ 114 (485)
..|+..=...+++.+...+ +..|.|+|||.+.++..+ +.+.+|...|+-. .+-....+|+.. +
T Consensus 53 ~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva-------------~n~~Vtacdia~--v 116 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVA-------------PNPRVTACDIAN--V 116 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS--------------SSTTEEES-TTS---
T ss_pred hcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhc-ccCceEEEeeccC-------------CCCCEEEecCcc--C
Confidence 3455555566777766444 579999999999998665 3567899999865 233467899988 6
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
|++++++|+++++.+|+-.. +..+++|+.|+|||||.+.|.+...... ..+.+.+.++..||..
T Consensus 117 PL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~L~IAEV~SRf~-------------~~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKPGGILKIAEVKSRFE-------------NVKQFIKALKKLGFKL 180 (219)
T ss_dssp S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG-S--------------HHHHHHHHHCTTEEE
T ss_pred cCCCCceeEEEEEhhhhCCC---cHHHHHHHHheeccCcEEEEEEecccCc-------------CHHHHHHHHHHCCCeE
Confidence 67899999999887766554 6789999999999999999998854321 4556677788999853
No 277
>PLN02672 methionine S-methyltransferase
Probab=99.08 E-value=1.2e-09 Score=118.15 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=92.2
Q ss_pred CCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC-----------------CCCeEEEEccCCCCCC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL-----------------KCSVEFEVADCTKKTY 345 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~-----------------~~~i~~~~~d~~~~~~ 345 (485)
+.+|||+|||+|.++..++++. ..+++|+|+|+.+++.|++++... ..+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999876 469999999999999999988632 1368999999876431
Q ss_pred C-CCCccEEEEccccc--------------c------------c--------CC----HHHHHHHHHhcCCCCcEEEEEe
Q 043471 346 P-ENSFDVIYSRDTIL--------------H------------I--------QD----KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 346 ~-~~~fD~i~~~~~~~--------------~------------~--------~~----~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
. ..+||+|+++-... | . .| ...++.++.++|+|||++++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 13699999974311 1 0 01 2567888889999999998872
Q ss_pred cccCCCCCChhHHHHHHhcCCCCCCHHHHH-HHHHhCCCeEEEE
Q 043471 387 YCKSFGTPSVEFSEYIKQRGYDLHDVKSYG-QMLKDAGFVDIIA 429 (485)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aGf~~~~~ 429 (485)
-. ...+.+. +++++.||+.+.+
T Consensus 279 G~---------------------~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 279 GG---------------------RPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred Cc---------------------cHHHHHHHHHHHHCCCCeeEE
Confidence 11 1134566 5888888887654
No 278
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.08 E-value=1.8e-09 Score=99.48 Aligned_cols=166 Identities=16% Similarity=0.306 Sum_probs=109.1
Q ss_pred cCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHh------ccccccCCch--HHHHHHHHHcC-CC--CCC
Q 043471 217 KKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVF------GVGFVSTGGI--ETTKEFVAKLD-LK--PGQ 285 (485)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~-~~--~~~ 285 (485)
.+......++...+.......|.+|+....... .+.+.+. -..||+.... .....++..+. .. ...
T Consensus 22 ~k~~~v~~Rl~~~~~~~~~~~~~~y~~~l~~~~---~e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~i 98 (268)
T COG1352 22 YKRTLVYRRLSRRLRKLGLKNFEEYLNLLESDS---EELQAFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPI 98 (268)
T ss_pred hhHHHHHHHHHHHHHHhCcccHHHHHHHHhCCH---HHHHHHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCce
Confidence 344445555555555555555666666544331 1222222 2244544432 23344444331 11 356
Q ss_pred EEEEECCCCCh----hHHHHhhcC------CCEEEEEeCCHHHHHHHHHHhc----------------------------
Q 043471 286 KVLDVGCGIGG----GDFYMADKF------DVHVVGIDLSINMISFALERAI---------------------------- 327 (485)
Q Consensus 286 ~vLDiGcG~G~----~~~~l~~~~------~~~v~g~D~s~~~~~~a~~~~~---------------------------- 327 (485)
+|+-+||+||. +++.+.+.. ..+|+|+|+|..+++.|+.-.-
T Consensus 99 rIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v 178 (268)
T COG1352 99 RIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRV 178 (268)
T ss_pred EEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEE
Confidence 99999999994 455555543 3699999999999999974221
Q ss_pred --CCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEE
Q 043471 328 --GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 328 --~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.+...|.|...|+...++..+.||+|+|.+|+.+++ ...++++.++..|+|||.|++.
T Consensus 179 ~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 179 KEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred ChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 122457888888877663457899999999999995 5778999999999999999987
No 279
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.07 E-value=4.1e-10 Score=99.49 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCc----chHHHHhh-----c--CcEEEEeCChHHHHHHHHHcC------C--------------C--
Q 043471 53 YEGKTVLEFGAGIGR----FTGELAKK-----A--GHVIALDFIDSVIKKNEEVNG------H--------------F-- 99 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~----~~~~l~~~-----~--~~v~giD~s~~~~~~a~~~~~------~--------------~-- 99 (485)
.+..+|...||++|. +++.|.+. + .+|+|+|+|+.+++.|++-.- . .
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 356799999999995 33444451 1 389999999999999986311 0 0
Q ss_pred --------CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 100 --------ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 100 --------~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
..|+|.+.|+.+ .+.+.+.||+|+|.+++-|+.++...++++.+++.|+|||+|++...
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~--~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLD--PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT---S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eeEChHHcCceEEEecccCC--CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 368999999987 33356899999999999999988899999999999999999999643
No 280
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.07 E-value=2.6e-10 Score=103.98 Aligned_cols=119 Identities=22% Similarity=0.310 Sum_probs=91.5
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCCC----C----CeEEEEeeccCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGHF----E----NVKFMCADVTSP 112 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~~----~----~~~~~~~d~~~~ 112 (485)
+.+..|-..-.+++..++|+|||-|...+-.-+.| .+++|+||++..|+.|++|.... . .+.|+.+|....
T Consensus 105 wIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 105 WIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 34444444445668889999999999887776665 58999999999999999875421 1 478999988653
Q ss_pred C----CCCCCCCeeEEEhhhhhhcc--ChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 113 D----LTFSEDSVDMMFSNWLLMYL--SDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 113 ~----~~~~~~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
. +++++.+||+|-|.+++|+. +.....-++.++.+.|+|||+++-+-+
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 2 34456669999999999875 444578899999999999999988644
No 281
>PRK01581 speE spermidine synthase; Validated
Probab=99.06 E-value=2.5e-09 Score=101.77 Aligned_cols=138 Identities=20% Similarity=0.189 Sum_probs=94.9
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHH--hc-----C-CCCCeEEEEccCCCC-CCCCCCccE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALER--AI-----G-LKCSVEFEVADCTKK-TYPENSFDV 352 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~--~~-----~-~~~~i~~~~~d~~~~-~~~~~~fD~ 352 (485)
...+||+||||+|..+..+++.. ..+|+++|+++.+++.|++. +. . ...+++++.+|+.+. +-..++||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 34599999999999998888764 35999999999999999962 11 1 246899999998763 333568999
Q ss_pred EEEcccc--cc-cC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 353 IYSRDTI--LH-IQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 353 i~~~~~~--~~-~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
|++...- .. .. -..++++.+++.|+|||.+++..... .. ... ....+.+.|+++||.+.
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp-----~~-~~~----------~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP-----AD-APL----------VYWSIGNTIEHAGLTVK 293 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh-----hh-hHH----------HHHHHHHHHHHhCCceE
Confidence 9996321 00 10 12568999999999999988873211 00 000 01236788888888777
Q ss_pred EEeecchHH
Q 043471 428 IAEDRTEQF 436 (485)
Q Consensus 428 ~~~~~~~~~ 436 (485)
......+.|
T Consensus 294 ~y~t~vPsy 302 (374)
T PRK01581 294 SYHTIVPSF 302 (374)
T ss_pred EEEEecCCC
Confidence 665544433
No 282
>PLN02366 spermidine synthase
Probab=99.06 E-value=5.5e-10 Score=105.94 Aligned_cols=117 Identities=18% Similarity=0.151 Sum_probs=86.4
Q ss_pred hhHHHhccCC---CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeecc
Q 043471 42 ERPEVLSLLP---PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVT 110 (485)
Q Consensus 42 ~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~ 110 (485)
...+++..++ ..++.+||+||||.|..+..+++.. .+|+.+|+++.+++.|++.... .++++++.+|+.
T Consensus 76 ~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~ 155 (308)
T PLN02366 76 AYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV 155 (308)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH
Confidence 3345555443 3567899999999999999998873 5899999999999999997532 358999999975
Q ss_pred CCCCCCCCCCeeEEEhhhhhhccChH--HHHHHHHHHHhhcccCcEEEEE
Q 043471 111 SPDLTFSEDSVDMMFSNWLLMYLSDK--EVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 111 ~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
..-...++++||+|++...-.+.+.. --.++++.+++.|+|||.+++.
T Consensus 156 ~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 156 EFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 43111235689999986543332221 1357899999999999998774
No 283
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.06 E-value=6.9e-10 Score=104.48 Aligned_cols=96 Identities=22% Similarity=0.291 Sum_probs=78.0
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT 115 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~ 115 (485)
+-.+......+++.+...++.+|||||||+|.++..|++++.+|+|+|+++.|++.++++... ++++++++|+.+.+
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~-- 100 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKVD-- 100 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcCC--
Confidence 335667778888888888899999999999999999999988999999999999999987643 68999999998843
Q ss_pred CCCCCeeEEEhhhhhhccCh
Q 043471 116 FSEDSVDMMFSNWLLMYLSD 135 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~ 135 (485)
+++-.+|.|++|- .++++.
T Consensus 101 ~~~~~~~~vv~Nl-PY~iss 119 (272)
T PRK00274 101 LSELQPLKVVANL-PYNITT 119 (272)
T ss_pred HHHcCcceEEEeC-CccchH
Confidence 3322258888874 455654
No 284
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.06 E-value=1.6e-09 Score=99.44 Aligned_cols=105 Identities=18% Similarity=0.293 Sum_probs=83.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-C-----CCCCCc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-T-----YPENSF 350 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~-----~~~~~f 350 (485)
..++.+|||+|||+|..+..++... +.+++++|+++.+++.|++++. ++..+++++.+|+.+. + .+.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 4456799999999999888888764 4699999999999999999986 4446799999998663 1 124689
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
|+|+.... -+....++..+.++|+|||.+++.+..
T Consensus 146 D~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 99988532 135668899999999999998886543
No 285
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.06 E-value=3.3e-10 Score=114.36 Aligned_cols=111 Identities=20% Similarity=0.342 Sum_probs=84.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCC--CCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPD--LTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~--~~~~~~ 119 (485)
..+++.+...++.+|||+|||+|.++..|++.+.+|+|+|+|++|++.|+++.. ...+++++++|+.+.. +++.++
T Consensus 287 ~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 287 ARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALG 366 (443)
T ss_pred HHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcC
Confidence 455666666778899999999999999999998999999999999999998653 2347999999997531 224457
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+||+|+++- .+.. ....++.+.+ ++|+++++++..
T Consensus 367 ~fD~Vi~dP--Pr~g---~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 367 GFDKVLLDP--PRAG---AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CCCEEEECc--CCcC---hHHHHHHHHh-cCCCeEEEEEeC
Confidence 899999862 2332 2245555555 699999999743
No 286
>PHA03412 putative methyltransferase; Provisional
Probab=99.06 E-value=1.1e-09 Score=97.84 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=74.5
Q ss_pred CCEEEEECCCCChhHHHHhhcC----CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF----DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~----~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
+.+|||+|||+|.++..++++. ..+|+++|+++.+++.|+++.. ++.+..+|+...++ +++||+|+++..+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----EATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----CCEEEEcchhcccc-cCCccEEEECCCC
Confidence 5699999999999999888752 4589999999999999998864 58899999987654 5689999998776
Q ss_pred cccC--C----------HHHHHHHHHhcCCCCcE
Q 043471 360 LHIQ--D----------KPALFKSFFKWLKPGGT 381 (485)
Q Consensus 360 ~~~~--~----------~~~~l~~~~~~LkpgG~ 381 (485)
.-.. + ...+++.+.++++||+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 5321 1 44578888886777664
No 287
>PRK03612 spermidine synthase; Provisional
Probab=99.05 E-value=1e-09 Score=112.47 Aligned_cols=139 Identities=19% Similarity=0.119 Sum_probs=97.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHH--hcC-----C-CCCeEEEEccCCCC-CCCCCCcc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALER--AIG-----L-KCSVEFEVADCTKK-TYPENSFD 351 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~--~~~-----~-~~~i~~~~~d~~~~-~~~~~~fD 351 (485)
+++.+|||||||+|..+..+++... .+++++|+++++++.++++ +.. . .++++++.+|..+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999887644 6999999999999999983 221 1 25789999998763 22347899
Q ss_pred EEEEcccccccCC-----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 352 VIYSRDTILHIQD-----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 352 ~i~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+|++.......+. ..++++.+++.|||||.++++.... .. ......++.+.++++||.+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~--~~--------------~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP--YF--------------APKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc--cc--------------chHHHHHHHHHHHHcCCEE
Confidence 9999754332221 2468999999999999998874211 00 0011246888999999944
Q ss_pred EEEeecchHH
Q 043471 427 IIAEDRTEQF 436 (485)
Q Consensus 427 ~~~~~~~~~~ 436 (485)
.......+.|
T Consensus 440 ~~~~~~vps~ 449 (521)
T PRK03612 440 TPYHVNVPSF 449 (521)
T ss_pred EEEEeCCCCc
Confidence 4434433444
No 288
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.04 E-value=8.4e-10 Score=103.11 Aligned_cols=93 Identities=25% Similarity=0.323 Sum_probs=78.6
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
.++.....+++.+...++.+|||||||+|.++..+++++.+|+|+|+++.+++.++++....++++++++|+.+.+ +
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~--~- 89 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD--L- 89 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC--c-
Confidence 5667888899888888899999999999999999999988999999999999999988755568999999998844 3
Q ss_pred CCCeeEEEhhhhhhccCh
Q 043471 118 EDSVDMMFSNWLLMYLSD 135 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~ 135 (485)
..||.|+++.. ++++.
T Consensus 90 -~~~d~Vv~NlP-y~i~s 105 (258)
T PRK14896 90 -PEFNKVVSNLP-YQISS 105 (258)
T ss_pred -hhceEEEEcCC-cccCc
Confidence 35899999754 44543
No 289
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.04 E-value=1.4e-09 Score=96.09 Aligned_cols=125 Identities=14% Similarity=0.283 Sum_probs=94.7
Q ss_pred cChhhhHHHhccCCCCC-CCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYE-GKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 116 (485)
|+..=...+++.+...+ ...|.|+|||.+.++. ....+|+..|+-+ .+-+.+.||+.. +|+
T Consensus 163 WP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-------------~~~~V~~cDm~~--vPl 224 (325)
T KOG3045|consen 163 WPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA-------------VNERVIACDMRN--VPL 224 (325)
T ss_pred CCCChHHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec-------------CCCceeeccccC--CcC
Confidence 55555567777776554 5689999999998765 4456899998754 355789999999 777
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
+++++|+++++.+|+-.. +..+++++.|+|+|||.++|.++... +.+...+.+-+...||....
T Consensus 225 ~d~svDvaV~CLSLMgtn---~~df~kEa~RiLk~gG~l~IAEv~SR-------------f~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 225 EDESVDVAVFCLSLMGTN---LADFIKEANRILKPGGLLYIAEVKSR-------------FSDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred ccCcccEEEeeHhhhccc---HHHHHHHHHHHhccCceEEEEehhhh-------------cccHHHHHHHHHHcCCeeee
Confidence 999999998876665443 67899999999999999999987532 22445577788888985433
No 290
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.04 E-value=3.2e-09 Score=94.23 Aligned_cols=116 Identities=9% Similarity=0.139 Sum_probs=84.3
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC-CCCCC
Q 043471 272 TKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK-TYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~-~~~~~ 348 (485)
.+.+++.+. ..++.+|||+|||+|.++..++.+...+|+++|.++.+++.+++++...+ .+++++++|+.+. +....
T Consensus 41 ~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~ 120 (199)
T PRK10909 41 RETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGT 120 (199)
T ss_pred HHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCC
Confidence 344555442 24577999999999999986555545699999999999999999886443 3689999998653 22245
Q ss_pred CccEEEEcccccccCCHHHHHHHHHh--cCCCCcEEEEEecc
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFK--WLKPGGTVLISDYC 388 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~ 388 (485)
+||+|++...+.. .-...+++.+.. +|+|+|.+++....
T Consensus 121 ~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 121 PHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 7999999887432 234556666655 48999999988543
No 291
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.02 E-value=1.5e-09 Score=96.34 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=83.9
Q ss_pred cChhhhHHHhccCCC-CCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCC
Q 043471 38 LDKEERPEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPD 113 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~ 113 (485)
.....++.+++.+.. .++.+|||+|||+|.+++.++.+ ..+|+++|+++.+++.++++... ..+++++++|+...
T Consensus 36 ~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~- 114 (199)
T PRK10909 36 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF- 114 (199)
T ss_pred CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH-
Confidence 334455566766643 56789999999999999865444 56999999999999998886432 24799999998753
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHh--hcccCcEEEEEec
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVK--WLKVGGYIFFRES 160 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~ 160 (485)
++...++||+|+++=. ++-.- .+.+++.+.+ +|+|+|++++...
T Consensus 115 l~~~~~~fDlV~~DPP-y~~g~--~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 115 LAQPGTPHNVVFVDPP-FRKGL--LEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HhhcCCCceEEEECCC-CCCCh--HHHHHHHHHHCCCcCCCcEEEEEec
Confidence 2212457999998732 22222 3456666655 4899999999754
No 292
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.01 E-value=4.4e-09 Score=102.26 Aligned_cols=103 Identities=19% Similarity=0.286 Sum_probs=85.6
Q ss_pred CcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC-CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhcc
Q 043471 56 KTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH-FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL 133 (485)
Q Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~ 133 (485)
-++|-+|||+-.++..+-+.|. .|+-+|+|+..++....+.+. .+...+...|+.. +.|++.+||+|+.-+.+.++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~--l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQ--LVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchh--ccCCCcceeEEEecCccccc
Confidence 4899999999999999988865 899999999999998887743 3478999999998 77899999999999888776
Q ss_pred C-hH-------HHHHHHHHHHhhcccCcEEEEEec
Q 043471 134 S-DK-------EVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 134 ~-~~-------~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
- ++ .....+.++.|+|+|||+++.-..
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 3 21 134678899999999999776544
No 293
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=2.2e-09 Score=94.13 Aligned_cols=101 Identities=24% Similarity=0.367 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCC-------------------------------
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLK------------------------------- 330 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~------------------------------- 330 (485)
.+..+|||||..|.++..+++.+++ .+.|+||.+..++.|++.+....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4568999999999999999999864 89999999999999999875111
Q ss_pred -----CCeEE-------EEccCCCCCCCCCCccEEEEccccccc------CCHHHHHHHHHhcCCCCcEEEEE
Q 043471 331 -----CSVEF-------EVADCTKKTYPENSFDVIYSRDTILHI------QDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 331 -----~~i~~-------~~~d~~~~~~~~~~fD~i~~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.++.+ ...|+. .+....||+|+|..+-.|+ +....+|+.+.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 01111 111121 1234679999997765544 23778999999999999999887
No 294
>PRK04148 hypothetical protein; Provisional
Probab=99.01 E-value=3.4e-09 Score=86.34 Aligned_cols=106 Identities=13% Similarity=0.256 Sum_probs=81.6
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCc-chHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGR-FTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
.+.+.+.++..++.+|||||||+|. ++..|++.|.+|+|+|+++..++.+++. .++++++|+.+.++... ..+
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~y-~~a 78 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEIY-KNA 78 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHHHH-hcC
Confidence 3456666666677899999999996 8899999999999999999999999885 57899999988665432 479
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
|+|.+.- +.++....+-++.+.+ |.-++|....
T Consensus 79 ~liysir-----pp~el~~~~~~la~~~--~~~~~i~~l~ 111 (134)
T PRK04148 79 KLIYSIR-----PPRDLQPFILELAKKI--NVPLIIKPLS 111 (134)
T ss_pred CEEEEeC-----CCHHHHHHHHHHHHHc--CCCEEEEcCC
Confidence 9999864 4455667777777744 4557775443
No 295
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.01 E-value=6.1e-09 Score=97.41 Aligned_cols=102 Identities=22% Similarity=0.348 Sum_probs=88.9
Q ss_pred CcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccCh
Q 043471 56 KTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSD 135 (485)
Q Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~ 135 (485)
...+|+|.|.|+.+..+.....+|-++++....+-.++.... +.|..+-+|...- .| +-|+|+..+++||++|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~-~P----~~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQD-TP----KGDAIWMKWILHDWTD 251 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccccccc-CC----CcCeEEEEeecccCCh
Confidence 689999999999999998888899999999999888877765 4588899998753 32 3469999999999999
Q ss_pred HHHHHHHHHHHhhcccCcEEEEEeccCCC
Q 043471 136 KEVEKLAERMVKWLKVGGYIFFRESCFHQ 164 (485)
Q Consensus 136 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 164 (485)
+...++|++|++.|+|||.|++.+.....
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 99999999999999999999999886543
No 296
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.00 E-value=1.1e-09 Score=107.87 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC--C--CCeEEEEeeccCCC--CCCCCCCeeEEEh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH--F--ENVKFMCADVTSPD--LTFSEDSVDMMFS 126 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~--~--~~~~~~~~d~~~~~--~~~~~~~~D~v~~ 126 (485)
++.+|||+|||+|.+++.++..++ +|+++|+|+.+++.|+++... . .+++++++|+.+.- +....++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 578999999999999988766655 899999999999999986532 2 36899999997631 1112458999998
Q ss_pred hhhhhccCh--------HHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 127 NWLLMYLSD--------KEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 127 ~~~~~~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.= ..+... ..+..++..+.++|+|||.+++...+
T Consensus 300 DP-P~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 300 DP-PKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CC-CCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 72 222221 12556677788999999999886543
No 297
>PLN02476 O-methyltransferase
Probab=98.99 E-value=1.5e-09 Score=100.57 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=83.8
Q ss_pred CCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC-C----CC
Q 043471 50 LPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT-F----SE 118 (485)
Q Consensus 50 ~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~-~----~~ 118 (485)
+...++.+|||||||+|..++.+++. +.+|+++|.++++.+.|++.... ..+++++.+|+.+. ++ + ..
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-L~~l~~~~~~ 192 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-LKSMIQNGEG 192 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-HHHHHhcccC
Confidence 34556789999999999999999975 45799999999999999987643 34899999998653 11 1 13
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++||+|+.-. ....+..+++.+.++|+|||.|++....
T Consensus 193 ~~FD~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 193 SSYDFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CCCCEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 6899999864 2344789999999999999998885443
No 298
>PLN02366 spermidine synthase
Probab=98.99 E-value=4.1e-09 Score=100.00 Aligned_cols=104 Identities=23% Similarity=0.249 Sum_probs=80.8
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCC-----CCCeEEEEccCCCC--CCCCCCccEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGL-----KCSVEFEVADCTKK--TYPENSFDVI 353 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~-----~~~i~~~~~d~~~~--~~~~~~fD~i 353 (485)
+...+||+||||.|..+..+++..+ .+|+.+|+++.+++.|++.+... ..+++++.+|+... ..+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4567999999999999999987643 48999999999999999987532 35899999997442 1235689999
Q ss_pred EEcccccccCC----HHHHHHHHHhcCCCCcEEEEE
Q 043471 354 YSRDTILHIQD----KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 354 ~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~i~ 385 (485)
++...-.+.+. ..++++.+++.|+|||.++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 98543222221 357899999999999999776
No 299
>PLN02672 methionine S-methyltransferase
Probab=98.99 E-value=1e-09 Score=118.56 Aligned_cols=122 Identities=18% Similarity=0.157 Sum_probs=86.5
Q ss_pred CCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC------------------CCCeEEEEeeccCCC
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH------------------FENVKFMCADVTSPD 113 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~------------------~~~~~~~~~d~~~~~ 113 (485)
++.+|||+|||+|.+++.++++. .+|+|+|+|+++++.|+++... ..+++|+++|+.+..
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 35689999999999999999874 5899999999999999876532 136999999987632
Q ss_pred CCCCCCCeeEEEhhhhhhccCh--------------------------------------HHHHHHHHHHHhhcccCcEE
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSD--------------------------------------KEVEKLAERMVKWLKVGGYI 155 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~--------------------------------------~~~~~~l~~~~~~L~pgG~l 155 (485)
.....+||+|+||= .+++. .-+++++.++.++|+|||.+
T Consensus 198 -~~~~~~fDlIVSNP--PYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l 274 (1082)
T PLN02672 198 -RDNNIELDRIVGCI--PQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIM 274 (1082)
T ss_pred -cccCCceEEEEECC--CcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEE
Confidence 11123699999971 11110 01357788888999999999
Q ss_pred EEEeccCCCCCccccCCCCCCCCChhHHH-HHhhhcceec
Q 043471 156 FFRESCFHQSGDSKRKHNPTHYREPRFYS-KVFKECQIQD 194 (485)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 194 (485)
++- .... ..+... +++++.||..
T Consensus 275 ~lE-iG~~---------------q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 275 IFN-MGGR---------------PGQAVCERLFERRGFRI 298 (1082)
T ss_pred EEE-ECcc---------------HHHHHHHHHHHHCCCCe
Confidence 883 3221 334555 5777767643
No 300
>PRK01581 speE spermidine synthase; Validated
Probab=98.99 E-value=1.5e-09 Score=103.23 Aligned_cols=106 Identities=23% Similarity=0.205 Sum_probs=80.1
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHc---------CCCCCeEEEEeeccCCCCCCCCCC
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVN---------GHFENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~---------~~~~~~~~~~~d~~~~~~~~~~~~ 120 (485)
...+.+||+||||.|..+..+.+.. .+|+++|+++++++.|++.. -..++++++.+|+... +.-..++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f-L~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF-LSSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH-HHhcCCC
Confidence 4456799999999999988888764 58999999999999999621 1236899999999864 2223568
Q ss_pred eeEEEhhhhhh---ccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 121 VDMMFSNWLLM---YLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 121 ~D~v~~~~~~~---~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
||+|++...-. ....---.++++.+++.|+|||.+++.
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99999874211 111111357999999999999998885
No 301
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.99 E-value=1.1e-09 Score=103.18 Aligned_cols=106 Identities=19% Similarity=0.152 Sum_probs=79.4
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
...+.+||+||||+|..+..+++.. .+|+++|+++++++.|++.... .++++++.+|.... +....++||+
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-l~~~~~~yDv 148 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-LADTENTFDV 148 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-HHhCCCCccE
Confidence 3456699999999999998888763 5899999999999999986422 24788888887542 1112468999
Q ss_pred EEhhhhhhccChHH--HHHHHHHHHhhcccCcEEEEE
Q 043471 124 MFSNWLLMYLSDKE--VEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 124 v~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|++.......+... ..++++.+.+.|+|||.+++.
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 99865422222211 357899999999999999985
No 302
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.98 E-value=5.8e-10 Score=96.58 Aligned_cols=100 Identities=21% Similarity=0.287 Sum_probs=85.6
Q ss_pred CCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhcc
Q 043471 55 GKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL 133 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~ 133 (485)
...++|||||.|.+...|...+ .+++-+|.|-.|++.++..-...-.+...++|-+. ++|.++++|+|+++.++||+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~--Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEF--LDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhc--ccccccchhhhhhhhhhhhh
Confidence 4579999999999999998875 48999999999999988754321246777888776 67899999999999999999
Q ss_pred ChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 134 SDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 134 ~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.+ .+..+.+|+..|||.|.++-+
T Consensus 151 Nd--LPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 151 ND--LPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred cc--CchHHHHHHHhcCCCccchhH
Confidence 98 779999999999999987663
No 303
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.97 E-value=4.2e-09 Score=99.09 Aligned_cols=103 Identities=21% Similarity=0.192 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC-----CCCeEEEEccCCCC-CCCCCCccEEEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL-----KCSVEFEVADCTKK-TYPENSFDVIYS 355 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~-----~~~i~~~~~d~~~~-~~~~~~fD~i~~ 355 (485)
.+.+||+||||+|.++..+++.. ..+++++|+++.+++.|++.+... ..++++..+|.... .-..++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999999888765 358999999999999999976432 24677888776442 112468999998
Q ss_pred cccccccC--C--HHHHHHHHHhcCCCCcEEEEE
Q 043471 356 RDTILHIQ--D--KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 356 ~~~~~~~~--~--~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.......+ + ..++++.+++.|+|||.+++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 65422222 2 468899999999999999887
No 304
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.97 E-value=1e-09 Score=116.62 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=80.2
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC--C--CCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH--F--ENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~--~--~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
++.+|||+|||+|.+++.+++.|+ +|+++|+|+.+++.|+++... . .+++++++|+.+. +.-..++||+|++.=
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-LKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH-HHHcCCCcCEEEECC
Confidence 478999999999999999999876 599999999999999987532 2 3689999998653 111146899999862
Q ss_pred hhhcc----------ChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 129 LLMYL----------SDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 129 ~~~~~----------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
- .+. ....+..++..+.++|+|||.+++...
T Consensus 617 P-~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 P-TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred C-CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 1 110 012256788899999999999988643
No 305
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.97 E-value=3e-09 Score=99.39 Aligned_cols=105 Identities=22% Similarity=0.287 Sum_probs=82.8
Q ss_pred CCcEEEEcCCCCc----chHHHHhh------cCcEEEEeCChHHHHHHHHHcCC----------------------C---
Q 043471 55 GKTVLEFGAGIGR----FTGELAKK------AGHVIALDFIDSVIKKNEEVNGH----------------------F--- 99 (485)
Q Consensus 55 ~~~vLDiGcG~G~----~~~~l~~~------~~~v~giD~s~~~~~~a~~~~~~----------------------~--- 99 (485)
..+|...||+||. ++..+.+. ..+|+|+|+|+.+++.|++-.-. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999995 33444443 24799999999999999864100 0
Q ss_pred --------CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 100 --------ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 100 --------~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
..|+|.+.|+.+.+.+ +.+.||+|+|.+++.|++++...++++.+++.|+|||+|++...
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 3578999998774332 25789999999999999888899999999999999999999643
No 306
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.96 E-value=6.7e-09 Score=102.26 Aligned_cols=104 Identities=23% Similarity=0.204 Sum_probs=79.4
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CC-CCeEEEEccCCCCC--C--CCCCccEEEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LK-CSVEFEVADCTKKT--Y--PENSFDVIYS 355 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~-~~i~~~~~d~~~~~--~--~~~~fD~i~~ 355 (485)
++.+|||+|||+|.++...+.....+|+++|+|+.+++.|++++.. +. .+++++++|+.+.. + ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 5789999999999998876654234999999999999999999864 33 36899999986641 1 2468999999
Q ss_pred ccccccc---------CCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 356 RDTILHI---------QDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 356 ~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
......- .+...+++.+.++|+|||.++...
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7553211 134455667889999999998764
No 307
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.96 E-value=8.8e-09 Score=103.93 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC----CC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK----TY 345 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~----~~ 345 (485)
....+++.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...+ .+++++.+|+.+. ++
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~ 358 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW 358 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh
Confidence 3445555566677789999999999999999987 4699999999999999999876333 4799999998652 23
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.+.+||+|+....-. .-...+++.+.+ ++|++.++++
T Consensus 359 ~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 359 AGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred cCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEc
Confidence 346799999754321 113566666654 8999988876
No 308
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.96 E-value=9.9e-10 Score=105.80 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=77.2
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
+.+...++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|+++... ..+++|+++|+.+... ...++||+|+
T Consensus 167 ~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~-~~~~~~D~Vv 245 (315)
T PRK03522 167 DWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT-AQGEVPDLVL 245 (315)
T ss_pred HHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH-hcCCCCeEEE
Confidence 334434578999999999999999999999999999999999999886532 2579999999977421 1245799999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++= ....- ...++ ++...++|+++++++..
T Consensus 246 ~dP--Pr~G~--~~~~~-~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 246 VNP--PRRGI--GKELC-DYLSQMAPRFILYSSCN 275 (315)
T ss_pred ECC--CCCCc--cHHHH-HHHHHcCCCeEEEEECC
Confidence 872 22211 11233 33444788888888643
No 309
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.95 E-value=1e-09 Score=97.39 Aligned_cols=104 Identities=26% Similarity=0.406 Sum_probs=77.5
Q ss_pred cEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCC-CCCCCCCCeeEEEhhhhhh
Q 043471 57 TVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSP-DLTFSEDSVDMMFSNWLLM 131 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~-~~~~~~~~~D~v~~~~~~~ 131 (485)
.+||||||.|.+...+|+. ...++|+|++...+..+.++.. ..+|+.++++|+... ..-++++++|.|+.++.=.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 8999999999999999988 5689999999999988777643 346999999998762 2225678999999886533
Q ss_pred ccChH------HHHHHHHHHHhhcccCcEEEEEec
Q 043471 132 YLSDK------EVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 132 ~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
|.... ....++..+.++|+|||.|.+.+-
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 33211 134799999999999999999643
No 310
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.95 E-value=5.5e-09 Score=95.41 Aligned_cols=164 Identities=21% Similarity=0.307 Sum_probs=109.9
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC-------CCCeEEEEccCCC------CCCC
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL-------KCSVEFEVADCTK------KTYP 346 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------~~~i~~~~~d~~~------~~~~ 346 (485)
-.+++..++++|||-|+-++..-+..=..++|+||+...++.|+++.... .-.+.|+.+|... ++++
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred HhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 35678899999999998777666552238999999999999999887621 1235788888754 2445
Q ss_pred CCCccEEEEccccccc-C---CHHHHHHHHHhcCCCCcEEEEEecccCC------CCCChhH--------------HHH-
Q 043471 347 ENSFDVIYSRDTILHI-Q---DKPALFKSFFKWLKPGGTVLISDYCKSF------GTPSVEF--------------SEY- 401 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~-~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~------~~~~~~~--------------~~~- 401 (485)
+.+||+|-|-.++|+. . ...-+|+++.+.|+|||.++-+.+.... ......+ ..+
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~ 273 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFD 273 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccC
Confidence 5559999999999887 2 3455799999999999999888553210 0000000 000
Q ss_pred HHhcCC--------------CCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHH
Q 043471 402 IKQRGY--------------DLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRE 443 (485)
Q Consensus 402 ~~~~~~--------------~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~ 443 (485)
..+.|. .+..-..+..+++..|++.+.+.....-|...+..+
T Consensus 274 ~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~df~~e~~~~~ 329 (389)
T KOG1975|consen 274 VPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFADFYEEELKKN 329 (389)
T ss_pred CCCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHHHHHHhcccc
Confidence 001110 112346788999999999998877666554444333
No 311
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=7.1e-09 Score=92.67 Aligned_cols=115 Identities=24% Similarity=0.329 Sum_probs=95.1
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCC--C-CCeEEEEeeccC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGH--F-ENVKFMCADVTS 111 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~ 111 (485)
..+.....++..+...+|++|||.|.|+|.++.+|+.. | .+|+..|+-++..+.|++++.. . .++++..+|+.+
T Consensus 78 IyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~ 157 (256)
T COG2519 78 IYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE 157 (256)
T ss_pred ecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc
Confidence 44556678889999999999999999999999999975 3 5999999999999999997643 2 359999999987
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
.. ++ ..||+|+.-. ++ .-.++..+.++|+|||.+++-.++.
T Consensus 158 ~~--~~-~~vDav~LDm-----p~--PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 158 GI--DE-EDVDAVFLDL-----PD--PWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cc--cc-cccCEEEEcC-----CC--hHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 43 33 3999999753 55 4589999999999999999866654
No 312
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=2.7e-09 Score=93.53 Aligned_cols=105 Identities=18% Similarity=0.280 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh-cC-cEEEEeCChHHHHHHHHHcCCCC------------------------------
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK-AG-HVIALDFIDSVIKKNEEVNGHFE------------------------------ 100 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~v~giD~s~~~~~~a~~~~~~~~------------------------------ 100 (485)
..+..+|||||.+|.++..+|+. ++ .|.|+||.+..++.|++.+....
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 35778999999999999999997 44 79999999999999998754211
Q ss_pred -------CeEEEEeec----cCCCCCCCCCCeeEEEhhhhhh--c--cChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 101 -------NVKFMCADV----TSPDLTFSEDSVDMMFSNWLLM--Y--LSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 101 -------~~~~~~~d~----~~~~~~~~~~~~D~v~~~~~~~--~--~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
++.|...+. .++ +.+....||+|+|..+-. | ..|+.+..++.++.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~df-l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDF-LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchh-hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 111111111 111 123457899999865422 3 24667999999999999999999983
No 313
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.94 E-value=5.8e-09 Score=86.18 Aligned_cols=117 Identities=18% Similarity=0.251 Sum_probs=98.8
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC---cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC--C-C
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG---HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD--L-T 115 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~-~ 115 (485)
..+.|...+....|.-|||+|.|||.++..+.++|. +++++|.|++.+...++.. +.++++.+|+.+++ + .
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCccccccchhhHHHHHhh
Confidence 346777888888899999999999999999988854 7999999999999888876 56789999988754 1 2
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+.+..||.|+|..-+..++.....+.++++...|++||-++.-...
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 5577899999998888888777889999999999999998875443
No 314
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.94 E-value=2.7e-09 Score=100.74 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=78.7
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDL 114 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~ 114 (485)
.++.....+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++... .++++++.+|+...++
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 4556778888888888899999999999999999999999999999999999999987642 3589999999987443
Q ss_pred CCCCCCeeEEEhhhhhhccChHH
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKE 137 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~ 137 (485)
..||+|+++ ..++++.+.
T Consensus 100 ----~~~d~VvaN-lPY~Istpi 117 (294)
T PTZ00338 100 ----PYFDVCVAN-VPYQISSPL 117 (294)
T ss_pred ----cccCEEEec-CCcccCcHH
Confidence 468998876 456666543
No 315
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=9e-09 Score=91.97 Aligned_cols=120 Identities=21% Similarity=0.237 Sum_probs=87.7
Q ss_pred hHHHHHHHHHcC---CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCC
Q 043471 269 IETTKEFVAKLD---LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTK 342 (485)
Q Consensus 269 ~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~ 342 (485)
.+.++.+++.+. ...+..|||+|||+|.++..++..+ .++++++|.|+.++..|.+|+.. +...+.+.+.+++.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 345555555552 3345689999999999999998876 67999999999999999998863 44577777655544
Q ss_pred C-----CCCCCCccEEEEcccccccCC--------------------------HHHHHHHHHhcCCCCcEEEEEecc
Q 043471 343 K-----TYPENSFDVIYSRDTILHIQD--------------------------KPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 343 ~-----~~~~~~fD~i~~~~~~~~~~~--------------------------~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
. +...+++|+++|+....--+| ...++.-+.|.|+|||.+.+....
T Consensus 211 d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 211 DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred ccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 2 345689999999854321111 334567788999999999888543
No 316
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.94 E-value=5.7e-09 Score=97.37 Aligned_cols=93 Identities=24% Similarity=0.351 Sum_probs=76.9
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
.+......+++.+...++.+|||||||+|.++..|++++.+|+++|+++.+++.++++....++++++.+|+...+. +
T Consensus 13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~--~ 90 (253)
T TIGR00755 13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL--P 90 (253)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh--h
Confidence 55677788999888888999999999999999999999989999999999999999876555689999999988443 2
Q ss_pred CCCee---EEEhhhhhhccCh
Q 043471 118 EDSVD---MMFSNWLLMYLSD 135 (485)
Q Consensus 118 ~~~~D---~v~~~~~~~~~~~ 135 (485)
.+| +|+++. .+|++.
T Consensus 91 --~~d~~~~vvsNl-Py~i~~ 108 (253)
T TIGR00755 91 --DFPKQLKVVSNL-PYNISS 108 (253)
T ss_pred --HcCCcceEEEcC-ChhhHH
Confidence 456 677664 455554
No 317
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=7.7e-08 Score=81.91 Aligned_cols=123 Identities=23% Similarity=0.181 Sum_probs=89.3
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
..-.|..|+|+|||||.++...+-....+|+|+|+.+++++.++++...+..++.|+.+|+.+.. ..+|.|+.+..|
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPF 118 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPF 118 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCC
Confidence 34457789999999999998877653369999999999999999999887789999999998874 679999998766
Q ss_pred ccc---CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 360 LHI---QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 360 ~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
--. .|++- +..+.+.- .++-+- + ...+.+.+.+...++|+++....
T Consensus 119 G~~~rhaDr~F-l~~Ale~s----~vVYsi-------------------H-~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 119 GSQRRHADRPF-LLKALEIS----DVVYSI-------------------H-KAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ccccccCCHHH-HHHHHHhh----heEEEe-------------------e-ccccHHHHHHHHHhcCCeEEEEE
Confidence 433 34433 33332221 111110 0 12256788999999999887654
No 318
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.92 E-value=6e-08 Score=88.27 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=107.9
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC---CEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCC-C--CCCCccEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD---VHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKT-Y--PENSFDVI 353 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~-~--~~~~fD~i 353 (485)
....+||||+||.|........... .++...|.|+..++..++.++ ++...++|.++|+.+.. + -+...+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 3556999999999998777766652 589999999999999999886 45555699999987641 1 13457999
Q ss_pred EEcccccccCC---HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhc------CCCCCCHHHHHHHHHhCCC
Q 043471 354 YSRDTILHIQD---KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQR------GYDLHDVKSYGQMLKDAGF 424 (485)
Q Consensus 354 ~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~aGf 424 (485)
+.++.++.++| ....++.+.+.|.|||.++.+.-.+. +..+.....+..+ .....|..++.++.+.|||
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH--PQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF 291 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH--PQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGF 291 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC--cchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCC
Confidence 99999999987 44568999999999999998843222 2222223333221 1355789999999999999
Q ss_pred eEEE
Q 043471 425 VDII 428 (485)
Q Consensus 425 ~~~~ 428 (485)
+-++
T Consensus 292 ~K~~ 295 (311)
T PF12147_consen 292 EKID 295 (311)
T ss_pred chhh
Confidence 8543
No 319
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.91 E-value=5.7e-09 Score=98.27 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
..+..+++.+.+.++.+|||||||+|.++..++++ +.+|+|+|+++.|++.+++++.. .+++++++|+.+.++++-.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCHHHcC
Confidence 45678888888888999999999999999999998 45999999999999999988753 5899999999988765422
Q ss_pred ccEEEEcccc
Q 043471 350 FDVIYSRDTI 359 (485)
Q Consensus 350 fD~i~~~~~~ 359 (485)
+|.|+++-..
T Consensus 106 ~~~vv~NlPY 115 (272)
T PRK00274 106 PLKVVANLPY 115 (272)
T ss_pred cceEEEeCCc
Confidence 5888887653
No 320
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.91 E-value=9.3e-09 Score=96.08 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=75.9
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
...+..+++.+.+.++.+|||||||+|.++..++++ +.+++++|+++.+++.+++++.. ..+++++++|+.+.+++
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~~-- 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDLP-- 90 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCch--
Confidence 356778888888888999999999999999999998 67999999999999999988764 34899999999988764
Q ss_pred CccEEEEccccc
Q 043471 349 SFDVIYSRDTIL 360 (485)
Q Consensus 349 ~fD~i~~~~~~~ 360 (485)
.||.|+++..++
T Consensus 91 ~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 EFNKVVSNLPYQ 102 (258)
T ss_pred hceEEEEcCCcc
Confidence 489999987653
No 321
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=1e-08 Score=91.55 Aligned_cols=122 Identities=19% Similarity=0.247 Sum_probs=86.6
Q ss_pred CccChhhhHHHhccCCCC---CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC---CCCCeEEE--
Q 043471 36 SDLDKEERPEVLSLLPPY---EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG---HFENVKFM-- 105 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~-- 105 (485)
.+-++++.+++++.+... ++..+||+|||+|.+++.++.. .+.|++||.|+.++..|.+++. ..+.+..+
T Consensus 127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEec
Confidence 444566777777777543 4556999999999999999876 5689999999999999887643 33556555
Q ss_pred --EeeccCCCCCCCCCCeeEEEhhhhhhccChH--------------------------HHHHHHHHHHhhcccCcEEEE
Q 043471 106 --CADVTSPDLTFSEDSVDMMFSNWLLMYLSDK--------------------------EVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 106 --~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~--------------------------~~~~~l~~~~~~L~pgG~l~~ 157 (485)
..|.... .+...+++|+++|| ..++..+ ....++.-+.|+|+|||.+.+
T Consensus 207 ~me~d~~~~-~~l~~~~~dllvsN--PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 207 IMESDASDE-HPLLEGKIDLLVSN--PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ccccccccc-cccccCceeEEecC--CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 3344332 33457899999998 3333221 123556667799999999999
Q ss_pred Eec
Q 043471 158 RES 160 (485)
Q Consensus 158 ~~~ 160 (485)
...
T Consensus 284 e~~ 286 (328)
T KOG2904|consen 284 ELV 286 (328)
T ss_pred Eec
Confidence 644
No 322
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.90 E-value=7.3e-09 Score=90.45 Aligned_cols=108 Identities=25% Similarity=0.317 Sum_probs=74.8
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC----CCCeEEEEccCCCCC----CCCCCcc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL----KCSVEFEVADCTKKT----YPENSFD 351 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~----~~~i~~~~~d~~~~~----~~~~~fD 351 (485)
..++.+|||+|||+|..+..++... ..+|+.+|.++ .++..+.++... ..++.+...|-.+.. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 4567899999999999999888873 56999999998 889888887643 356777777654421 2346899
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
+|++..+++.-...+.+++-+.++|+|+|.+++....+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999999988888999999999999999987775433
No 323
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.90 E-value=2e-09 Score=96.00 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=84.5
Q ss_pred HHHhccCC-CCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCC--C
Q 043471 44 PEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPD--L 114 (485)
Q Consensus 44 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~--~ 114 (485)
.+++..+- ..+..+||||||++|+.++.+++. +.+|+.+|++++..+.|++.... ..+|+++.+|+.+.- +
T Consensus 34 g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 34 GQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPEL 113 (205)
T ss_dssp HHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHH
Confidence 34444443 456779999999999999999975 67999999999999999986543 248999999987520 1
Q ss_pred C--CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 115 T--FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 115 ~--~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
. .+.++||+|+.-. ....+..++..+.++|+|||.|++....
T Consensus 114 ~~~~~~~~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 114 ANDGEEGQFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHTTTTTSEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred HhccCCCceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEcccc
Confidence 0 1135899999864 2334778999999999999999885443
No 324
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.89 E-value=9.9e-09 Score=98.87 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC-CCCCccEEEEccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY-PENSFDVIYSRDTIL 360 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~-~~~~fD~i~~~~~~~ 360 (485)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+ .+++++++|+.+... ..++||+|++...-.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 4679999999999999999987 6799999999999999999886433 479999999977532 235799999975421
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.-...+++. ...++|++.++++.
T Consensus 252 --G~~~~~~~~-l~~~~~~~ivyvsc 274 (315)
T PRK03522 252 --GIGKELCDY-LSQMAPRFILYSSC 274 (315)
T ss_pred --CccHHHHHH-HHHcCCCeEEEEEC
Confidence 112233333 34478888888873
No 325
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.89 E-value=5.8e-09 Score=92.66 Aligned_cols=101 Identities=26% Similarity=0.422 Sum_probs=78.1
Q ss_pred EEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC---CCCCCCccEEEEccccc
Q 043471 286 KVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK---TYPENSFDVIYSRDTIL 360 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~---~~~~~~fD~i~~~~~~~ 360 (485)
-+||||||.|.++..+|... +..++|+|++...+..+.+++...+ .|+.++++|+... -++++++|.|+.+..=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 89999999999999999986 7899999999999999888776322 4899999998873 24568999998865433
Q ss_pred ccC--------CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 361 HIQ--------DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 361 ~~~--------~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
|.. -.+.+++.+.++|+|||.+.+.+
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 332 14678999999999999998884
No 326
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.89 E-value=1e-08 Score=97.28 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=91.4
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC---CCCeEEEE-ccCCCCC----CCCCCccEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL---KCSVEFEV-ADCTKKT----YPENSFDVI 353 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~---~~~i~~~~-~d~~~~~----~~~~~fD~i 353 (485)
++.++||||||+|.+...++.+. +++++|+|+++.+++.|++++... ..++++.. .|..... .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 46799999999998887777654 789999999999999999998743 35677754 2322221 235789999
Q ss_pred EEcccccccCCH-----HHHHHHH----------------HhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCC-----
Q 043471 354 YSRDTILHIQDK-----PALFKSF----------------FKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGY----- 407 (485)
Q Consensus 354 ~~~~~~~~~~~~-----~~~l~~~----------------~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~----- 407 (485)
+|+..++--... ..-.+.+ ..++.+||.+.|........ ..+....++
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS------~~~~~~~gwftsmv 267 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES------KAFAKQVLWFTSLV 267 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH------HHHHhhCcEEEEEe
Confidence 999887643221 1112222 23344666655543221110 112222221
Q ss_pred -CCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 408 -DLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 408 -~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
...+...+.+.|++.|...+.+.++
T Consensus 268 ~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 268 SKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred eccCCHHHHHHHHHHcCCceEEEEEE
Confidence 2347889999999999976665443
No 327
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.89 E-value=2.9e-09 Score=107.39 Aligned_cols=109 Identities=17% Similarity=0.293 Sum_probs=81.1
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCC--CCCCCCCC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSP--DLTFSEDS 120 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~--~~~~~~~~ 120 (485)
.+++.+...++.+|||+|||+|.+++.+++.+.+|+|+|+++++++.|+++.. ...+++++.+|+.+. .+++.+++
T Consensus 283 ~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 283 RALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 45555666677899999999999999999988899999999999999998653 235899999998752 12233467
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
||+|+..- ....- ...+++.+.+ ++|+++++++
T Consensus 363 ~D~vi~dP--Pr~G~--~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 363 PDVLLLDP--PRKGC--AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CCEEEECc--CCCCC--CHHHHHHHHh-cCCCEEEEEc
Confidence 99999752 22221 2356665554 8899988885
No 328
>PRK03612 spermidine synthase; Provisional
Probab=98.87 E-value=4.8e-09 Score=107.62 Aligned_cols=106 Identities=14% Similarity=0.085 Sum_probs=81.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHH--cC-------CCCCeEEEEeeccCCCCCCCCCCe
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEV--NG-------HFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~--~~-------~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
+++.+|||||||+|..+..+++.. .+|+++|+++++++.+++. .. ..++++++.+|..+. +...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~-l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW-LRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH-HHhCCCCC
Confidence 457899999999999999998874 5999999999999999983 11 125899999998763 22234689
Q ss_pred eEEEhhhhhhccChH---HHHHHHHHHHhhcccCcEEEEEe
Q 043471 122 DMMFSNWLLMYLSDK---EVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 122 D~v~~~~~~~~~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
|+|++...-...+.. -.+++++.+++.|+|||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999997543322211 02368999999999999999864
No 329
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.86 E-value=1.1e-08 Score=93.69 Aligned_cols=116 Identities=19% Similarity=0.280 Sum_probs=87.5
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDL 114 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~ 114 (485)
.....+.+++.....+++.|||+|||+|.++.+.++.|+ +|++++-| +|.+.|++.... ..+|+.+.+.+++..+
T Consensus 162 TgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL 240 (517)
T KOG1500|consen 162 TGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL 240 (517)
T ss_pred hhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC
Confidence 345667888888888899999999999999999999976 89999955 688888886543 3479999999999766
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
| ++.|+|++--+-+.+-++...+..-...+.|+|.|..+-+
T Consensus 241 P---Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 241 P---EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred c---hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 4 6899999854322222222333344456999999987654
No 330
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.86 E-value=1.1e-08 Score=89.35 Aligned_cols=140 Identities=21% Similarity=0.334 Sum_probs=100.9
Q ss_pred HHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhc--CC-CCCeEEEEccCCCC--CCCCCC
Q 043471 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAI--GL-KCSVEFEVADCTKK--TYPENS 349 (485)
Q Consensus 276 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~--~~-~~~i~~~~~d~~~~--~~~~~~ 349 (485)
++....+.|.+|||.+.|-|..+...+++ |+ .|+.++.+|+.++.|.-|-- ++ ...++++.+|+.+. .|++++
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 34445677999999999999999999998 66 99999999999998864421 11 13578999998774 478999
Q ss_pred ccEEEEccc-ccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 350 FDVIYSRDT-ILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 350 fD~i~~~~~-~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
||+|+.-.. |.+.. --+++.++++|+|||||+++--.-...... .| ..-+..+.+.|+++||.+
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry-----------rG--~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY-----------RG--LDLPKGVAERLRRVGFEV 272 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc-----------cc--CChhHHHHHHHHhcCcee
Confidence 999987432 22211 246788999999999999865532211100 11 123567889999999997
Q ss_pred EEE
Q 043471 427 IIA 429 (485)
Q Consensus 427 ~~~ 429 (485)
+..
T Consensus 273 v~~ 275 (287)
T COG2521 273 VKK 275 (287)
T ss_pred eee
Confidence 764
No 331
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=7.2e-09 Score=88.09 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=81.4
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
+.-.|.+|+|+|||||.+++..+-.| ..|+|+|+.+++++.++++.... +++.|+.+|++++. +.+|.|+.|=
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~-----~~~dtvimNP 116 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR-----GKFDTVIMNP 116 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC-----CccceEEECC
Confidence 45678899999999999999998888 48999999999999999986543 47999999999854 6788877652
Q ss_pred h----hhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 129 L----LMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 129 ~----~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
. .-| .|. .++....+..+ .++--+. ..+.+++++..+..|+
T Consensus 117 PFG~~~rh-aDr---~Fl~~Ale~s~---vVYsiH~----------------a~~~~f~~~~~~~~G~ 161 (198)
T COG2263 117 PFGSQRRH-ADR---PFLLKALEISD---VVYSIHK----------------AGSRDFVEKFAADLGG 161 (198)
T ss_pred CCcccccc-CCH---HHHHHHHHhhh---eEEEeec----------------cccHHHHHHHHHhcCC
Confidence 2 234 232 35555555432 1221111 1156788888888775
No 332
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.85 E-value=7.8e-09 Score=91.92 Aligned_cols=115 Identities=19% Similarity=0.242 Sum_probs=86.5
Q ss_pred hhhHHHhcc-CCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEE-eeccCC
Q 043471 41 EERPEVLSL-LPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMC-ADVTSP 112 (485)
Q Consensus 41 ~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~-~d~~~~ 112 (485)
++.-.++.. +....+++|||||.+.|+.++.++.. ..+++.+|+++++.+.|++..... +++..+. +|..+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 333344444 34567789999999999999999986 348999999999999999986543 3577888 476543
Q ss_pred CCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 113 DLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
-.....++||+|+.-. ....++.++..+.++|+|||.+++...
T Consensus 125 l~~~~~~~fDliFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 125 LSRLLDGSFDLVFIDA-----DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHhccCCCccEEEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 1113468999999753 233478899999999999999888543
No 333
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.85 E-value=2.1e-08 Score=89.19 Aligned_cols=108 Identities=21% Similarity=0.380 Sum_probs=86.3
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEE-ccCCCCC--CCCCCccE
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEV-ADCTKKT--YPENSFDV 352 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~-~d~~~~~--~~~~~fD~ 352 (485)
.....++|||||.+.|..+.+++... +.+++.+|+++++.+.|++++. +...++.... +|..+.- ...++||+
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 34467799999999999999999876 4699999999999999999987 4556688877 4664431 34689999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccC
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKS 390 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 390 (485)
|+.-. .-.+.+.+++.+.++|+|||.+++-.....
T Consensus 136 iFIDa---dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 136 VFIDA---DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEEeC---ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 99843 124678999999999999999988765544
No 334
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.85 E-value=7.8e-09 Score=101.78 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=77.5
Q ss_pred CCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 50 LPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 50 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
+...++.+|||+|||+|.+++.++..+.+|+|+|+++.+++.|+++.. ...+++|+.+|+.+.... ..++||+|++.
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~vi~D 307 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-QMSAPELVLVN 307 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-cCCCCCEEEEC
Confidence 333456799999999999999999888999999999999999998653 234799999999763211 12469999886
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
...-+- ...+++.+. .++|+++++++..
T Consensus 308 --PPr~G~--~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 308 --PPRRGI--GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred --CCCCCC--cHHHHHHHH-hcCCCeEEEEEeC
Confidence 223221 235555554 4799999999743
No 335
>PLN02476 O-methyltransferase
Probab=98.84 E-value=3.5e-08 Score=91.55 Aligned_cols=106 Identities=13% Similarity=0.224 Sum_probs=84.7
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-C-C----CCCC
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-T-Y----PENS 349 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~-~----~~~~ 349 (485)
...+..+|||||+++|..+.+++... +.+++++|.+++..+.|++++. ++..++++..+|+.+. + + ..++
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 34456799999999999999999865 4589999999999999999986 4556899999988553 1 1 1368
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
||+|+.-.. -.+...+++.+.++|+|||.+++-+..
T Consensus 195 FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 195 YDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 999998542 235778899999999999998887543
No 336
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.84 E-value=7.8e-09 Score=92.16 Aligned_cols=103 Identities=20% Similarity=0.363 Sum_probs=82.9
Q ss_pred CCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-C-----CCCCCccE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-T-----YPENSFDV 352 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~-----~~~~~fD~ 352 (485)
...+||||||++|..+.++++.. +.+++.+|+++...+.|++.+. ++..+|+++.+|+.+. + .+.++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 45599999999999999999876 5799999999999999999886 5557899999998652 1 11358999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
|+.-.. -.+...++..+.++|+|||.+++-+..
T Consensus 125 VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 125 VFIDAD---KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEEST---GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEEccc---ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 998652 235778899999999999999887544
No 337
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.7e-09 Score=90.16 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=84.6
Q ss_pred HHHhccCC--CCCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHcCC------------CCCeEEE
Q 043471 44 PEVLSLLP--PYEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVNGH------------FENVKFM 105 (485)
Q Consensus 44 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~~~------------~~~~~~~ 105 (485)
..+++.|. ..+|.+.||+|.|+|+++..++.. |..+.|||.-++.++.+++++.. .+++.++
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 45666766 778999999999999999888865 55669999999999999987542 2478999
Q ss_pred EeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 106 CADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 106 ~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
++|... ...+..+||.|++... ..+..+++...|+|||.+++-
T Consensus 150 vGDgr~--g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 150 VGDGRK--GYAEQAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred eCCccc--cCCccCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 999887 4456789999999743 335667888899999999984
No 338
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.83 E-value=1.4e-08 Score=91.75 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=68.6
Q ss_pred HHHhccCCC-CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCCCe-EEEEeeccCCC---CCCC
Q 043471 44 PEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFENV-KFMCADVTSPD---LTFS 117 (485)
Q Consensus 44 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~-~~~~~d~~~~~---~~~~ 117 (485)
..+++.++. .++.++||+|||+|.++..++++|+ +|+|+|++++|+....+.. +++ .+...|+.... .+..
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCcccCCHhHcCCC
Confidence 456666654 4678999999999999999999965 7999999998887622222 222 23333333211 2122
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
-..+|+++++.+ ..+..+.+.|+| |.+++-
T Consensus 141 ~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 141 FATFDVSFISLI----------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred ceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEE
Confidence 347898888743 457789999999 776663
No 339
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=7.7e-09 Score=93.56 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=91.4
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
...+..+++++..+. +..++|+|||.|.....= -..-++|.|++...+..+++.. ......+|+.+ +|++
T Consensus 31 ~~Wp~v~qfl~~~~~--gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~----~~~~~~ad~l~--~p~~ 100 (293)
T KOG1331|consen 31 APWPMVRQFLDSQPT--GSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSG----GDNVCRADALK--LPFR 100 (293)
T ss_pred CccHHHHHHHhccCC--cceeeecccCCcccCcCC--CcceeeecchhhhhccccccCC----Cceeehhhhhc--CCCC
Confidence 344566777777665 889999999999543211 2347999999999998888742 22678889888 8889
Q ss_pred CCCeeEEEhhhhhhccCh-HHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 118 EDSVDMMFSNWLLMYLSD-KEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+.+||.+++..++||+.. ..+.++++++.|.|+|||...+..+...
T Consensus 101 ~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 101 EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 999999999999999964 4488999999999999999888655543
No 340
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.81 E-value=2e-08 Score=94.33 Aligned_cols=123 Identities=22% Similarity=0.241 Sum_probs=99.8
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEe-eccCC
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCA-DVTSP 112 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~-d~~~~ 112 (485)
.+++++..+.+.+.....+|..|||-=||||.+.....-.|.+|+|+|++..|++-|+.+.... ....+..+ |++.
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~- 257 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN- 257 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc-
Confidence 5677788888888888999999999999999999999999999999999999999999887544 25555555 9988
Q ss_pred CCCCCCCCeeEEEhhhhhhc------cC-hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 113 DLTFSEDSVDMMFSNWLLMY------LS-DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~------~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|++++++|.|++--...- .. ++-..++++.+.++|++||++++..+
T Consensus 258 -lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 -LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred -CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 6677888999998422211 11 23378999999999999999999644
No 341
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.6e-08 Score=90.75 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=83.2
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
.+......+++.+...++..|||||+|.|.++..|++++..|+++|+.+.++...+++....++++.+.+|+.+.+++
T Consensus 14 ~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~-- 91 (259)
T COG0030 14 IDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP-- 91 (259)
T ss_pred cCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcch--
Confidence 566778899999988889999999999999999999999999999999999999999987667999999999986643
Q ss_pred CC-CeeEEEhhhhhhccChHH
Q 043471 118 ED-SVDMMFSNWLLMYLSDKE 137 (485)
Q Consensus 118 ~~-~~D~v~~~~~~~~~~~~~ 137 (485)
.- .++.|++|- .++++.+-
T Consensus 92 ~l~~~~~vVaNl-PY~Isspi 111 (259)
T COG0030 92 SLAQPYKVVANL-PYNISSPI 111 (259)
T ss_pred hhcCCCEEEEcC-CCcccHHH
Confidence 21 678888874 67777644
No 342
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.80 E-value=6.8e-09 Score=101.32 Aligned_cols=97 Identities=27% Similarity=0.499 Sum_probs=71.8
Q ss_pred CEEEEECCCCChhHHHHhhcCCCEEEEE---eCCHHHHHHHHHHhcCCCCCeEEEEcc--CCCCCCCCCCccEEEEcccc
Q 043471 285 QKVLDVGCGIGGGDFYMADKFDVHVVGI---DLSINMISFALERAIGLKCSVEFEVAD--CTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~---D~s~~~~~~a~~~~~~~~~~i~~~~~d--~~~~~~~~~~fD~i~~~~~~ 359 (485)
..+||+|||+|.++.+|.++ +..+..+ |..+.+++.|.++ | +-...+- -..+||++++||+|.|..++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR--G----vpa~~~~~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER--G----VPAMIGVLGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred EEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc--C----cchhhhhhccccccCCccchhhhhccccc
Confidence 36999999999999999988 5433333 4556777777665 2 2222222 35689999999999998876
Q ss_pred ccc-CCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 360 LHI-QDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 360 ~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
... ++-..+|-++.|+|||||+++++.+.
T Consensus 192 i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 192 IPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred ccchhcccceeehhhhhhccCceEEecCCc
Confidence 544 44456789999999999999998543
No 343
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.80 E-value=2.3e-08 Score=91.26 Aligned_cols=136 Identities=24% Similarity=0.301 Sum_probs=96.8
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTS 111 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~ 111 (485)
+.+.....++..+...+|++|||.|.|+|.++.+|++. ..+|+..|+.++.++.|++.+. ...++++...|+.+
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 34456678889999999999999999999999999987 3599999999999999998743 33489999999975
Q ss_pred CCCC-CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhc-ccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 112 PDLT-FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWL-KVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 112 ~~~~-~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
.-.+ -.++.+|.|+.-. ++ .-.++..+.++| +|||.++.-.++.. .-......+++
T Consensus 104 ~g~~~~~~~~~DavfLDl-----p~--Pw~~i~~~~~~L~~~gG~i~~fsP~ie---------------Qv~~~~~~L~~ 161 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLDL-----PD--PWEAIPHAKRALKKPGGRICCFSPCIE---------------QVQKTVEALRE 161 (247)
T ss_dssp G--STT-TTSEEEEEEES-----SS--GGGGHHHHHHHE-EEEEEEEEEESSHH---------------HHHHHHHHHHH
T ss_pred ccccccccCcccEEEEeC-----CC--HHHHHHHHHHHHhcCCceEEEECCCHH---------------HHHHHHHHHHH
Confidence 2221 1136899998753 44 336889999999 99999998666543 23344455667
Q ss_pred cceecC
Q 043471 190 CQIQDA 195 (485)
Q Consensus 190 ~~~~~~ 195 (485)
.||.++
T Consensus 162 ~gf~~i 167 (247)
T PF08704_consen 162 HGFTDI 167 (247)
T ss_dssp TTEEEE
T ss_pred CCCeee
Confidence 788654
No 344
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.79 E-value=2.6e-08 Score=94.07 Aligned_cols=88 Identities=22% Similarity=0.272 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~ 347 (485)
..+..+++.+.+.++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++... ..+++++.+|+.+.++
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-- 99 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-- 99 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--
Confidence 56778888888889999999999999999999987 568999999999999999987643 3589999999988764
Q ss_pred CCccEEEEccccc
Q 043471 348 NSFDVIYSRDTIL 360 (485)
Q Consensus 348 ~~fD~i~~~~~~~ 360 (485)
..||.|+++-..+
T Consensus 100 ~~~d~VvaNlPY~ 112 (294)
T PTZ00338 100 PYFDVCVANVPYQ 112 (294)
T ss_pred cccCEEEecCCcc
Confidence 4689999865443
No 345
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.79 E-value=2.7e-08 Score=89.71 Aligned_cols=102 Identities=25% Similarity=0.402 Sum_probs=86.0
Q ss_pred CEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCC---CCCCCCccEEEEcccc
Q 043471 285 QKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKK---TYPENSFDVIYSRDTI 359 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~---~~~~~~fD~i~~~~~~ 359 (485)
..+||||||.|.++..+|++. ...++|||+....+..|.+++...+. |+.+++.|+..+ -+++++.|-|..+..=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 479999999999999999986 57999999999999999999887776 999999998764 2445699999987654
Q ss_pred cccCC--------HHHHHHHHHhcCCCCcEEEEEe
Q 043471 360 LHIQD--------KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 360 ~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
-|... .+.+++.+.++|+|||.+.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 44421 5688999999999999999884
No 346
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.79 E-value=2.1e-08 Score=100.07 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCcchHHHHhhc------CcEEEEeCChHHHHHHHHH---cCCCCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 55 GKTVLEFGAGIGRFTGELAKKA------GHVIALDFIDSVIKKNEEV---NGHFENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~------~~v~giD~s~~~~~~a~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
+..|||||||+|-++...++.+ .+|++||-++.++...+++ ++-.++|+++.+|+++..+| .++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---CceeEEE
Confidence 5789999999999987776653 4899999999988776554 22235899999999996643 4999999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|-.+-.+...+-..+++....|.|||||+++-+
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEeCc
Confidence 865433333333667899999999999987653
No 347
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.78 E-value=3.2e-07 Score=84.50 Aligned_cols=143 Identities=19% Similarity=0.136 Sum_probs=101.7
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc-----------------------------------
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI----------------------------------- 327 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~----------------------------------- 327 (485)
...+||--|||.|+++..+|.+ |..+.|.|.|--|+-..+=.+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 3569999999999999999998 8899999999988644332111
Q ss_pred ------CCCCCeEEEEccCCCCCCCC---CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH
Q 043471 328 ------GLKCSVEFEVADCTKKTYPE---NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF 398 (485)
Q Consensus 328 ------~~~~~i~~~~~d~~~~~~~~---~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 398 (485)
....++....+|+.+...++ ++||+|+....+--.++.-+.++.|.++|||||..+=..+......+..
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~-- 212 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS-- 212 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC--
Confidence 01235666677777764444 6899999997777778899999999999999996654433221111100
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 399 SEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
......-..+.+++..+++..||+++..+.
T Consensus 213 ---~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 ---IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ---CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000011245789999999999999987655
No 348
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.78 E-value=1.1e-07 Score=88.77 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
..+..+++.+...++.+|||||||+|.++..++++. ..++++|+++.+++.++++... ..+++++++|+...+++ .
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~--~ 91 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDLP--D 91 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCChh--H
Confidence 567788888888889999999999999999999984 5899999999999999988753 45799999999988764 4
Q ss_pred cc---EEEEcccccccCCHHHHHHHHHhcCCCCcE
Q 043471 350 FD---VIYSRDTILHIQDKPALFKSFFKWLKPGGT 381 (485)
Q Consensus 350 fD---~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 381 (485)
+| +|+++-.+ |+ ...++.++.. .+|+.
T Consensus 92 ~d~~~~vvsNlPy-~i--~~~il~~ll~--~~~~~ 121 (253)
T TIGR00755 92 FPKQLKVVSNLPY-NI--SSPLIFKLLE--KPKFR 121 (253)
T ss_pred cCCcceEEEcCCh-hh--HHHHHHHHhc--cCCCc
Confidence 66 77776543 33 2344444443 44443
No 349
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.77 E-value=1.7e-08 Score=88.07 Aligned_cols=106 Identities=24% Similarity=0.215 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC-----CCCeEEEEeeccCCC--CCCCCCCee
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH-----FENVKFMCADVTSPD--LTFSEDSVD 122 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~--~~~~~~~~D 122 (485)
..++.+|||+|||+|..++.+++. ..+|+..|..+ .++..+.+... .+++++...|+.+.. .....++||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 456889999999999999999998 67999999999 88877765322 247888888876521 012346899
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|+++.+++.-.. .+.+++-+.++|+|+|.++++..
T Consensus 122 ~IlasDv~Y~~~~--~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYDEEL--FEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S-GGG--HHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccchHHH--HHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999999987654 77899999999999999888644
No 350
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.76 E-value=1.1e-08 Score=98.63 Aligned_cols=111 Identities=33% Similarity=0.495 Sum_probs=96.0
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
...++..++|+|||.|....+++...++.++|+|.++..+..+..... .+...-.++.+|+.+.|+++++||.+.+..
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 356777999999999999999987657899999999999988877654 233344558899999999999999999999
Q ss_pred cccccCCHHHHHHHHHhcCCCCcEEEEEecccC
Q 043471 358 TILHIQDKPALFKSFFKWLKPGGTVLISDYCKS 390 (485)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 390 (485)
+.+|.++...+++|++|+++|||.++..++...
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred ecccCCcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 999999999999999999999999998876553
No 351
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.76 E-value=1.7e-08 Score=88.06 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=100.5
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcC----CCCCeEEEEeeccCCCCCCCCCCee
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNG----HFENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
.....++|.+|||.+.|-|+.++..+++|+ +|+.++.+|+.++.|+-+-- ...+++++.+|+.+.--.|+|.+||
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 344567899999999999999999999998 99999999999998876421 1137899999998865568899999
Q ss_pred EEEhhh-hhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 123 MMFSNW-LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 123 ~v~~~~-~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
+|+--= -+.+.+.---+++.++++|+|+|||.++.-..++-.. . .-..-+....+.|.++||..
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r------y--rG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR------Y--RGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc------c--ccCChhHHHHHHHHhcCcee
Confidence 998421 0112222224589999999999999998753332111 0 00113556778888999853
No 352
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.7e-08 Score=84.70 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=87.1
Q ss_pred HHHHHHHHHcC--CCCCCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCC-----------CCCe
Q 043471 270 ETTKEFVAKLD--LKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGL-----------KCSV 333 (485)
Q Consensus 270 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~-----------~~~i 333 (485)
.+...+++.|. +.||.+.||+|+|+|.++..++.-. |...+|||.-++.++.+++++... ..++
T Consensus 67 ~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 67 HMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 45566677775 8899999999999999988777544 445699999999999999987521 1467
Q ss_pred EEEEccCCCCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 334 EFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 334 ~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.++.+|......+..+||.|.+.... .+..+++...|+|||++++-
T Consensus 147 ~ivvGDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 147 SIVVGDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEEeCCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence 88899998876667899999997543 34457888899999999886
No 353
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.75 E-value=5.9e-08 Score=89.51 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=82.7
Q ss_pred CCCcEEEEcCCCCc----chHHHHhhc-------CcEEEEeCChHHHHHHHHHcCC---------------------C--
Q 043471 54 EGKTVLEFGAGIGR----FTGELAKKA-------GHVIALDFIDSVIKKNEEVNGH---------------------F-- 99 (485)
Q Consensus 54 ~~~~vLDiGcG~G~----~~~~l~~~~-------~~v~giD~s~~~~~~a~~~~~~---------------------~-- 99 (485)
..-+|.-.||+||. +++.|.+.. .+|+|+|+|..+++.|+.-.-. .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999995 334444432 4799999999999998852110 0
Q ss_pred --------CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 100 --------ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 100 --------~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
..|.|.+.|+.+... ..+.||+|+|-+++-++..+...+++..++..|+|||+|++...
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 257888888876432 56789999999999999988899999999999999999999644
No 354
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.75 E-value=2.2e-08 Score=90.35 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=82.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCC-CCCCCCeeEEEhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDL-TFSEDSVDMMFSN 127 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~-~~~~~~~D~v~~~ 127 (485)
.....+||||||.|.+...+|++.+ .++|||+....+..|.+++.. ..|+.+++.|+..+-- -+++++.|-|+.+
T Consensus 47 ~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 47 NNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred CCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence 3345899999999999999999954 799999999888887776543 2389999999987422 2445699999988
Q ss_pred hhhhccCh------HHHHHHHHHHHhhcccCcEEEEEe
Q 043471 128 WLLMYLSD------KEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 128 ~~~~~~~~------~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+.=.|... -....+++.+.+.|+|||.|.+.+
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 75333221 114589999999999999999963
No 355
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=4.8e-07 Score=76.08 Aligned_cols=126 Identities=19% Similarity=0.265 Sum_probs=94.7
Q ss_pred CCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
..-+||||||+|..+..|++.. +..+.++|++|.+++...+.+.-...++..++.|+..-- ..++.|+++.+....-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-ccCCccEEEECCCcCc
Confidence 5689999999999999999876 468999999999999987777655567888898887642 3488999988754321
Q ss_pred c-----------------CC----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHH
Q 043471 362 I-----------------QD----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLK 420 (485)
Q Consensus 362 ~-----------------~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (485)
- .+ ...++.++-.+|.|.|.+++..... -.+.++.+.++
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~--------------------N~p~ei~k~l~ 182 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA--------------------NKPKEILKILE 182 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh--------------------cCHHHHHHHHh
Confidence 1 11 4566777888899999998873211 13567888899
Q ss_pred hCCCeEEEEe
Q 043471 421 DAGFVDIIAE 430 (485)
Q Consensus 421 ~aGf~~~~~~ 430 (485)
.-||.+....
T Consensus 183 ~~g~~~~~~~ 192 (209)
T KOG3191|consen 183 KKGYGVRIAM 192 (209)
T ss_pred hcccceeEEE
Confidence 9999876543
No 356
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.73 E-value=9.1e-08 Score=83.96 Aligned_cols=116 Identities=21% Similarity=0.265 Sum_probs=82.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCE---------EEEEeCCHHHHHHHHHHhc--CCCCCeEEEE
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVH---------VVGIDLSINMISFALERAI--GLKCSVEFEV 337 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~---------v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~ 337 (485)
..+..++.....+++..|||.-||+|.++...+... +.. ++|+|+++.+++.|++++. +....+.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 456677777788899999999999999998766543 334 8899999999999999986 4445689999
Q ss_pred ccCCCCCCCCCCccEEEEccccccc-CC-------HHHHHHHHHhcCCCCcEEEEE
Q 043471 338 ADCTKKTYPENSFDVIYSRDTILHI-QD-------KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 338 ~d~~~~~~~~~~fD~i~~~~~~~~~-~~-------~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.|+..+++.++++|+|+++..+..- .+ ...+++++.++|++...+++.
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999998777899999998665432 11 345688999999993333333
No 357
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.73 E-value=2.2e-07 Score=77.03 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=97.6
Q ss_pred CCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC
Q 043471 266 TGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK 343 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~ 343 (485)
+...-.++++...++...|..|||+|.|||.++..+.++. ...+++++.|++.+...++... .+.++.+|+.++
T Consensus 31 PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----~~~ii~gda~~l 106 (194)
T COG3963 31 PSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----GVNIINGDAFDL 106 (194)
T ss_pred CCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----CccccccchhhH
Confidence 3344567778888888999999999999999999998874 4589999999999999988876 456788888776
Q ss_pred C-----CCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 344 T-----YPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 344 ~-----~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
. +++..||.|+|.-.+-.++ -..++++.+...|.+||.++--.+.
T Consensus 107 ~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 107 RTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 3 4567799999987776664 4567899999999999998877665
No 358
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.72 E-value=2.9e-08 Score=90.95 Aligned_cols=111 Identities=19% Similarity=0.258 Sum_probs=84.8
Q ss_pred HHHhccC-CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC-
Q 043471 44 PEVLSLL-PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT- 115 (485)
Q Consensus 44 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~- 115 (485)
.+++..+ ...+..+|||||+++|+.++.+++. +.+|+.+|++++..+.|++.... ..+|+++.+++.+. ++
T Consensus 68 g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~-L~~ 146 (247)
T PLN02589 68 GQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV-LDQ 146 (247)
T ss_pred HHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH-HHH
Confidence 3444443 3456779999999999999999875 56899999999999999987543 35899999998663 11
Q ss_pred C-----CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 116 F-----SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 116 ~-----~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+ ..++||+|+.-.- ...+..+++.+.++|+|||.|++...
T Consensus 147 l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 1 1368999998632 33477899999999999999888433
No 359
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.72 E-value=1.3e-07 Score=86.10 Aligned_cols=146 Identities=16% Similarity=0.294 Sum_probs=107.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc----CcEEEEeCChHHHHHHHHHcCC--CCC-eEEEEeeccCCC-CCCCCCCeeE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA----GHVIALDFIDSVIKKNEEVNGH--FEN-VKFMCADVTSPD-LTFSEDSVDM 123 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~----~~v~giD~s~~~~~~a~~~~~~--~~~-~~~~~~d~~~~~-~~~~~~~~D~ 123 (485)
...+.+||||.||.|+..+-..... .+|.-.|+|+..++..++.... ..+ ++|.++|+.+.. +.--+...++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 3456799999999999987666552 4789999999999998886543 234 499999987742 2222456799
Q ss_pred EEhhhhhhccChHH-HHHHHHHHHhhcccCcEEEEEeccCCCCCc-------cccCCCC--CCCCChhHHHHHhhhccee
Q 043471 124 MFSNWLLMYLSDKE-VEKLAERMVKWLKVGGYIFFRESCFHQSGD-------SKRKHNP--THYREPRFYSKVFKECQIQ 193 (485)
Q Consensus 124 v~~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~ 193 (485)
++.++.+..+++.. ....++-+.+.+.|||+++.+--.+++... .++...+ +..++....-++++.+||.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFE 292 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCc
Confidence 99999999999855 667899999999999999997544443321 1112223 3445788889999999996
Q ss_pred cCCC
Q 043471 194 DASG 197 (485)
Q Consensus 194 ~~~g 197 (485)
....
T Consensus 293 K~~q 296 (311)
T PF12147_consen 293 KIDQ 296 (311)
T ss_pred hhhh
Confidence 5543
No 360
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.72 E-value=8.1e-08 Score=94.61 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC-CCCCccEEEEcccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY-PENSFDVIYSRDTI 359 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~-~~~~fD~i~~~~~~ 359 (485)
.++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|++++...+ .++++..+|+.+... ...+||+|++...-
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 35679999999999999999976 5799999999999999999886443 378999999866421 12469999997664
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
. .-...+++.+. .++|++.++++.
T Consensus 311 ~--G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 311 R--GIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred C--CCcHHHHHHHH-hcCCCeEEEEEe
Confidence 3 22345566665 479999999884
No 361
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.71 E-value=3.4e-07 Score=80.20 Aligned_cols=118 Identities=18% Similarity=0.254 Sum_probs=87.9
Q ss_pred CEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCC---CCCccEEEEcccccc
Q 043471 285 QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP---ENSFDVIYSRDTILH 361 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~i~~~~~~~~ 361 (485)
.++|||||=+......-.. -..|+.||+.+. .-.+.+.|+.+.|.| .++||+|.++.++.+
T Consensus 53 lrlLEVGals~~N~~s~~~--~fdvt~IDLns~--------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG--WFDVTRIDLNSQ--------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred ceEEeecccCCCCcccccC--ceeeEEeecCCC--------------CCCceeeccccCCCCCCcccceeEEEEEEEEee
Confidence 6999999864433322221 247999999662 234567888887764 578999999999999
Q ss_pred cCCHH---HHHHHHHhcCCCCcE-----EEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 362 IQDKP---ALFKSFFKWLKPGGT-----VLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 362 ~~~~~---~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
+|++. +.++.+++.|+|+|. +++..+... ....++.+.+.|..+|+..||..+..+.
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C-------------v~NSRy~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC-------------VTNSRYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH-------------hhcccccCHHHHHHHHHhCCcEEEEEEe
Confidence 98754 679999999999999 777743221 1123677889999999999999887654
No 362
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.71 E-value=1e-07 Score=86.25 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=86.2
Q ss_pred HHHHHHHHHcCC-CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCe-EEEEccCCCCCC--
Q 043471 270 ETTKEFVAKLDL-KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV-EFEVADCTKKTY-- 345 (485)
Q Consensus 270 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i-~~~~~d~~~~~~-- 345 (485)
.....+++.+.+ .++..|||+|||||.++..+++....+|+|+|+++.|+......- .++ .+...|+.....
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~----~~v~~~~~~ni~~~~~~~ 136 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD----ERVKVLERTNIRYVTPAD 136 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC----CCeeEeecCCcccCCHhH
Confidence 355667777765 367799999999999999999873348999999998887622221 122 233334443221
Q ss_pred ---CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCC------CCCCHHHHH
Q 043471 346 ---PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGY------DLHDVKSYG 416 (485)
Q Consensus 346 ---~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 416 (485)
.-..+|+++++.. ..+..+.+.|+| |.+++.- ++...... ......|. ...-...+.
T Consensus 137 ~~~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L~--KPqFE~~~---~~~~~~giv~~~~~~~~~~~~~~ 202 (228)
T TIGR00478 137 IFPDFATFDVSFISLI--------SILPELDLLLNP-NDLTLLF--KPQFEAGR---EKKNKKGVVRDKEAIALALHKVI 202 (228)
T ss_pred cCCCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEEEc--ChHhhhcH---hhcCcCCeecCHHHHHHHHHHHH
Confidence 1135676666443 247899999999 7766552 22111000 01111111 111245667
Q ss_pred HHHHhCCCeEEEEee
Q 043471 417 QMLKDAGFVDIIAED 431 (485)
Q Consensus 417 ~~l~~aGf~~~~~~~ 431 (485)
..+.+.||++..+..
T Consensus 203 ~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 203 DKGESPDFQEKKIIF 217 (228)
T ss_pred HHHHcCCCeEeeEEE
Confidence 778889999877654
No 363
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.70 E-value=8.2e-08 Score=84.94 Aligned_cols=105 Identities=29% Similarity=0.330 Sum_probs=74.7
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHh--hcCcEEEEeCChHHHHHHHHH---cCCCCCeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAK--KAGHVIALDFIDSVIKKNEEV---NGHFENVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~giD~s~~~~~~a~~~---~~~~~~~~~~~~d~~~~~~~ 115 (485)
.++.++.+. ..++.+|||+-||.|.+++.+|+ ++..|+++|++|.+++..++. +.-..++..+.+|..++.
T Consensus 90 ~Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~-- 165 (200)
T PF02475_consen 90 TERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL-- 165 (200)
T ss_dssp HHHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----
T ss_pred HHHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--
Confidence 566777776 45588999999999999999998 577899999999999988775 333357899999998842
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIF 156 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 156 (485)
+.+.+|.|+++. .+.. ..++..+.+++++||.+.
T Consensus 166 -~~~~~drvim~l--p~~~----~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 166 -PEGKFDRVIMNL--PESS----LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TT-EEEEEE----TSSG----GGGHHHHHHHEEEEEEEE
T ss_pred -CccccCEEEECC--hHHH----HHHHHHHHHHhcCCcEEE
Confidence 278999999874 2222 258888999999999874
No 364
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.70 E-value=4.6e-08 Score=91.44 Aligned_cols=102 Identities=25% Similarity=0.337 Sum_probs=78.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
+-.++.|||+|||+|.++...|+....+|+++|.|.-+ +.|++.+. ++...|++..+.+++..+|.++.|+|++-++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 44678999999999999999998854599999997665 88888765 4456799999999988777889999999665
Q ss_pred cccc--CC-HHHHHHHHHhcCCCCcEEE
Q 043471 359 ILHI--QD-KPALFKSFFKWLKPGGTVL 383 (485)
Q Consensus 359 ~~~~--~~-~~~~l~~~~~~LkpgG~l~ 383 (485)
=+++ .+ ...+|-.=-+.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 4333 12 3334444458999999874
No 365
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.69 E-value=2.4e-07 Score=86.89 Aligned_cols=145 Identities=20% Similarity=0.260 Sum_probs=109.6
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
-...+|+|.|.|..+..+...+. ++-++++....+-.+.+.+. ..|+.+-+|+.+. .|. -|+|++-+++||+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc---CCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 36899999999999999998654 69999999888887777763 1488888888776 443 46999999999996
Q ss_pred --CHHHHHHHHHhcCCCCcEEEEEecccCCCCCC-----------hhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 364 --DKPALFKSFFKWLKPGGTVLISDYCKSFGTPS-----------VEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 364 --~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|-.++|++++..|+|||.+++.+...+..... ..+.......| .-.+..++..++.++||.+..+.
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~G-kert~~e~q~l~~~~gF~~~~~~ 329 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGG-KERTLKEFQALLPEEGFPVCMVA 329 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccc-eeccHHHHHhcchhhcCceeEEE
Confidence 57789999999999999999998744431111 11122222223 35678999999999999998877
Q ss_pred ecchHH
Q 043471 431 DRTEQF 436 (485)
Q Consensus 431 ~~~~~~ 436 (485)
....+|
T Consensus 330 ~~~~~~ 335 (342)
T KOG3178|consen 330 LTAYSY 335 (342)
T ss_pred eccCcc
Confidence 665544
No 366
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.67 E-value=9.1e-08 Score=87.70 Aligned_cols=103 Identities=15% Similarity=0.243 Sum_probs=82.6
Q ss_pred CCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-C-C-----CCCCcc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-T-Y-----PENSFD 351 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~-~-----~~~~fD 351 (485)
...+|||||+++|..+.+++... +.+++.+|.++...+.|++.+. ++..+|+++.+++.+. + + ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 45599999999999999998765 5699999999999999999986 5567899999988653 1 1 126899
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+|+.-.- -......++.+.++|+|||.+++-+..
T Consensus 159 ~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 159 FIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred EEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 9998542 235677888999999999998876543
No 367
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.67 E-value=1.3e-07 Score=83.75 Aligned_cols=121 Identities=13% Similarity=0.106 Sum_probs=82.4
Q ss_pred CccChhhhHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC---CCCeEEEEeecc
Q 043471 36 SDLDKEERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH---FENVKFMCADVT 110 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~ 110 (485)
.+.+...++.+...+. ..++.+|||++||+|.+++.++.+|+ +|+++|.++.+++.+++.... ..+++++.+|+.
T Consensus 30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 4445555666666653 34678999999999999999999976 899999999999988876432 236899999995
Q ss_pred CCCCC-C-CCC-CeeEEEhhhhhhccChHHHHHHHHHHHh--hcccCcEEEEEec
Q 043471 111 SPDLT-F-SED-SVDMMFSNWLLMYLSDKEVEKLAERMVK--WLKVGGYIFFRES 160 (485)
Q Consensus 111 ~~~~~-~-~~~-~~D~v~~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~ 160 (485)
+. +. . ..+ .||+|+.- ..+.... ....+..+.+ +|+++|.+++...
T Consensus 110 ~~-l~~~~~~~~~~dvv~~D-PPy~~~~--~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 110 RA-LKFLAKKPTFDNVIYLD-PPFFNGA--LQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HH-HHHhhccCCCceEEEEC-cCCCCCc--HHHHHHHHHHCCCCCCCeEEEEEec
Confidence 42 11 1 122 36666653 2222221 3455555544 7999998888543
No 368
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.66 E-value=4.7e-07 Score=80.14 Aligned_cols=104 Identities=14% Similarity=-0.006 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCC-C-C-CCC-CccEEEEc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKK-T-Y-PEN-SFDVIYSR 356 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~-~-~-~~~-~fD~i~~~ 356 (485)
.+.+|||++||+|.++..++.+...+|+++|.++.+++.+++++... ..+++++.+|+... . + ... .||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 57899999999999999999984348999999999999999988643 34688999998442 1 1 122 47877776
Q ss_pred ccccccCCHHHHHHHHH--hcCCCCcEEEEEec
Q 043471 357 DTILHIQDKPALFKSFF--KWLKPGGTVLISDY 387 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 387 (485)
..+.. .....+++.+. .+|+++|.+++...
T Consensus 129 PPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 65532 34555565554 46899998887743
No 369
>PRK04148 hypothetical protein; Provisional
Probab=98.64 E-value=3.8e-07 Score=74.40 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=74.2
Q ss_pred HHHHHcCCCCCCEEEEECCCCCh-hHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCC-CCCcc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGG-GDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP-ENSFD 351 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD 351 (485)
.+.+.+....+.+|||||||+|. ++..|++. |..|+++|+++..++.++++ .++++.+|+.+..+. -+.+|
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh------CCeEEECcCCCCCHHHHhcCC
Confidence 34444545566899999999996 88888876 88999999999999999876 468899999876533 35699
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
+|.+...- ++....+.++.+. -|.-++|.....
T Consensus 80 liysirpp---~el~~~~~~la~~--~~~~~~i~~l~~ 112 (134)
T PRK04148 80 LIYSIRPP---RDLQPFILELAKK--INVPLIIKPLSG 112 (134)
T ss_pred EEEEeCCC---HHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 99986532 3444445555543 355577765443
No 370
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.64 E-value=1.5e-07 Score=93.94 Aligned_cols=99 Identities=24% Similarity=0.311 Sum_probs=73.4
Q ss_pred CCEEEEECCCCChhHHHHhhcC-----CCEEEEEeCCHHHHHHHHHH--hcCCCCCeEEEEccCCCCCCCCCCccEEEEc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF-----DVHVVGIDLSINMISFALER--AIGLKCSVEFEVADCTKKTYPENSFDVIYSR 356 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~--~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~ 356 (485)
+..|||||||+|.++...++.. ..+|++|+-++.++...+++ ..+++.+|+++.+|+.+...+ .++|+|||-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5689999999999987766553 25999999999988777654 346778999999999998765 589999994
Q ss_pred c--cccccCCHHHHHHHHHhcCCCCcEEE
Q 043471 357 D--TILHIQDKPALFKSFFKWLKPGGTVL 383 (485)
Q Consensus 357 ~--~~~~~~~~~~~l~~~~~~LkpgG~l~ 383 (485)
. +|-.-.-.++.|....|.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 3 22222345678889999999999874
No 371
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.61 E-value=1.5e-07 Score=89.37 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=56.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC----CCeEEEE-eeccCCC--CCCCCCCeeE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF----ENVKFMC-ADVTSPD--LTFSEDSVDM 123 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~----~~~~~~~-~d~~~~~--~~~~~~~~D~ 123 (485)
..+.++||||||+|.+...|+.+ +.+++|+|+++.+++.|++.+... .++++.+ .+..... +..+.+.||+
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 35679999999999888888765 779999999999999999875432 3577754 3333211 1124568999
Q ss_pred EEhhh
Q 043471 124 MFSNW 128 (485)
Q Consensus 124 v~~~~ 128 (485)
|+|+=
T Consensus 193 ivcNP 197 (321)
T PRK11727 193 TLCNP 197 (321)
T ss_pred EEeCC
Confidence 99983
No 372
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.61 E-value=4.2e-07 Score=86.43 Aligned_cols=106 Identities=16% Similarity=0.129 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh------cCcEEEEeCChHHHHHHHHHcC--CCCCe--EEEEeeccCCC--CCC--CC
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK------AGHVIALDFIDSVIKKNEEVNG--HFENV--KFMCADVTSPD--LTF--SE 118 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~~~~a~~~~~--~~~~~--~~~~~d~~~~~--~~~--~~ 118 (485)
.++..|+|+|||+|.-+..|.+. ...++++|+|.++++.+.+++. ..+.+ .-+++|..+.- ++- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 34668999999999987655543 3579999999999999888876 34555 44888886531 111 12
Q ss_pred CCeeEEE-hhhhhhccChHHHHHHHHHHHh-hcccCcEEEEE
Q 043471 119 DSVDMMF-SNWLLMYLSDKEVEKLAERMVK-WLKVGGYIFFR 158 (485)
Q Consensus 119 ~~~D~v~-~~~~~~~~~~~~~~~~l~~~~~-~L~pgG~l~~~ 158 (485)
+...+|+ ...++..+++.+...+|+++.+ .|+|||.+++.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 3355655 4558999998889999999999 99999999995
No 373
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=8e-08 Score=77.37 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=70.3
Q ss_pred HcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 278 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
..+--.|++++|+|||.|.++...+.-..-.|+|+|+.|++++.+++++.....++++.++|+.++.+..+.||.++.+.
T Consensus 43 TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 43 TYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred hhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 33434688999999999998865554434589999999999999999998877788999999999887788999999987
Q ss_pred cccc
Q 043471 358 TILH 361 (485)
Q Consensus 358 ~~~~ 361 (485)
.|..
T Consensus 123 pFGT 126 (185)
T KOG3420|consen 123 PFGT 126 (185)
T ss_pred CCCc
Confidence 7753
No 374
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.59 E-value=2.2e-07 Score=83.27 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=74.3
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~ 117 (485)
.....+.+..+.++++.|||||.|||.++..|.++|.+|+++|+.+.|+....++.... +..+.+.+|..+.++
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--- 121 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--- 121 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC---
Confidence 55678888889999999999999999999999999999999999999999999886543 478999999988665
Q ss_pred CCCeeEEEhhhh
Q 043471 118 EDSVDMMFSNWL 129 (485)
Q Consensus 118 ~~~~D~v~~~~~ 129 (485)
..||.++++.-
T Consensus 122 -P~fd~cVsNlP 132 (315)
T KOG0820|consen 122 -PRFDGCVSNLP 132 (315)
T ss_pred -cccceeeccCC
Confidence 46899998753
No 375
>PLN02823 spermine synthase
Probab=98.59 E-value=1.7e-07 Score=89.98 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
+.+.+||.||+|.|..+..+.+. ..+|+.+|+++++++.|++.... .++++++.+|.... +...+++||+|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-L~~~~~~yDvI 180 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-LEKRDEKFDVI 180 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-HhhCCCCccEE
Confidence 35679999999999999988875 35899999999999999997642 36899999998774 23345789999
Q ss_pred Ehhhh-------hhccChHHHHHHHH-HHHhhcccCcEEEEE
Q 043471 125 FSNWL-------LMYLSDKEVEKLAE-RMVKWLKVGGYIFFR 158 (485)
Q Consensus 125 ~~~~~-------~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~ 158 (485)
++-.. ..++- -.++++ .+.+.|+|||.+++.
T Consensus 181 i~D~~dp~~~~~~~~Ly---t~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGDLADPVEGGPCYQLY---TKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EecCCCccccCcchhhc---cHHHHHHHHHHhcCCCcEEEEe
Confidence 97531 11111 236787 899999999998874
No 376
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.57 E-value=1.3e-07 Score=83.01 Aligned_cols=121 Identities=20% Similarity=0.175 Sum_probs=85.8
Q ss_pred cCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC--c---------EEEEeCChHHHHHHHHHcCC---CC
Q 043471 35 ASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG--H---------VIALDFIDSVIKKNEEVNGH---FE 100 (485)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~---------v~giD~s~~~~~~a~~~~~~---~~ 100 (485)
..++.+.....++......++..|||--||+|.+.+..+..+. . ++|.|+++++++.|+++... ..
T Consensus 9 ~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~ 88 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED 88 (179)
T ss_dssp STSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred CCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence 4456777788888888888899999999999999988776633 3 77999999999999987532 23
Q ss_pred CeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc-cCh-----HHHHHHHHHHHhhcccCcEEEE
Q 043471 101 NVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY-LSD-----KEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 101 ~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~-~~~-----~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
.+.+.+.|+.. +++.++++|+|+++--+.. ++. .-+.++++++.++|++...+++
T Consensus 89 ~i~~~~~D~~~--l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 89 YIDFIQWDARE--LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GEEEEE--GGG--GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred ceEEEecchhh--cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 68999999998 5567789999999854432 222 2256788999999999444444
No 377
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.57 E-value=1.7e-07 Score=85.78 Aligned_cols=142 Identities=17% Similarity=0.174 Sum_probs=91.2
Q ss_pred CCCCCcEEEEcCCCCcchHHHH-hhcCcEEEEeCChHHHHHHHHHcCC-------------------C-----------C
Q 043471 52 PYEGKTVLEFGAGIGRFTGELA-KKAGHVIALDFIDSVIKKNEEVNGH-------------------F-----------E 100 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~-~~~~~v~giD~s~~~~~~a~~~~~~-------------------~-----------~ 100 (485)
..+|.++||||||+-.+...-+ +...+++..|+++.-++..++-... . .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3457799999999976643333 4466899999999877655442211 0 1
Q ss_pred Ce-EEEEeeccCCCCCCCC-----CCeeEEEhhhhhhccC--hHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCC
Q 043471 101 NV-KFMCADVTSPDLTFSE-----DSVDMMFSNWLLMYLS--DKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKH 172 (485)
Q Consensus 101 ~~-~~~~~d~~~~~~~~~~-----~~~D~v~~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~ 172 (485)
.| ..+.+|+...+ |+.. ..||+|++.+++.-.. .+++.++++++.++|||||.|++....-...-......
T Consensus 134 ~Vk~Vv~cDV~~~~-pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~ 212 (256)
T PF01234_consen 134 AVKQVVPCDVTQPN-PLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHK 212 (256)
T ss_dssp HEEEEEE--TTSSS-TTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEE
T ss_pred hhceEEEeeccCCC-CCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEe
Confidence 13 47778987643 2222 3599999999988774 35589999999999999999999765432222222334
Q ss_pred CCCCCCChhHHHHHhhhcceec
Q 043471 173 NPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
.+....+.+++++.++++|+..
T Consensus 213 F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 213 FPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp EE---B-HHHHHHHHHHTTEEE
T ss_pred cccccCCHHHHHHHHHHcCCEE
Confidence 5556668999999999999954
No 378
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.56 E-value=5.1e-07 Score=80.96 Aligned_cols=85 Identities=27% Similarity=0.347 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~~ 347 (485)
..+..+++...+++++.|||+|.|||.++..+.++ +.+|+++++++.|+....++.++.. ...++..+|+...++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 56788899999999999999999999999999998 8899999999999999999998766 6889999999887654
Q ss_pred CCccEEEEcc
Q 043471 348 NSFDVIYSRD 357 (485)
Q Consensus 348 ~~fD~i~~~~ 357 (485)
-||.++++-
T Consensus 123 -~fd~cVsNl 131 (315)
T KOG0820|consen 123 -RFDGCVSNL 131 (315)
T ss_pred -ccceeeccC
Confidence 589999853
No 379
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=6e-08 Score=78.06 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=64.0
Q ss_pred CCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 50 LPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 50 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
.+..+|++++|+|||+|.++...+-. ...|+|+|+.|++++.++++..... +++++++|+.++ .+..+.||.++.+
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildl--e~~~g~fDtaviN 121 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDL--ELKGGIFDTAVIN 121 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccch--hccCCeEeeEEec
Confidence 35567899999999999999666554 4479999999999999998876544 789999999984 4456899999887
Q ss_pred hhh
Q 043471 128 WLL 130 (485)
Q Consensus 128 ~~~ 130 (485)
--+
T Consensus 122 ppF 124 (185)
T KOG3420|consen 122 PPF 124 (185)
T ss_pred CCC
Confidence 433
No 380
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.54 E-value=5e-07 Score=79.99 Aligned_cols=98 Identities=23% Similarity=0.324 Sum_probs=72.2
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
+.++..|+|+-||.|.++..+++.. +..|+++|++|.+++..++++. ++..++...++|..+... ...||.|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 6788999999999999999999832 5689999999999999999876 455678999999988754 68899999865
Q ss_pred cccccCCHHHHHHHHHhcCCCCcEEE
Q 043471 358 TILHIQDKPALFKSFFKWLKPGGTVL 383 (485)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 383 (485)
. +.-..+|..+.+++++||.+-
T Consensus 178 p----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 P----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred h----HHHHHHHHHHHHHhcCCcEEE
Confidence 3 234567889999999999764
No 381
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.54 E-value=9e-08 Score=87.57 Aligned_cols=143 Identities=20% Similarity=0.138 Sum_probs=89.5
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc------------------CC-----------CCCe
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI------------------GL-----------KCSV 333 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~------------------~~-----------~~~i 333 (485)
.|.++||||||+-..-..-+...--+++..|.++..++..++.+. +. ...|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 467999999998544332232322489999999988886665443 10 1113
Q ss_pred E-EEEccCCCCC-CCC-----CCccEEEEccccccc-CC---HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHH
Q 043471 334 E-FEVADCTKKT-YPE-----NSFDVIYSRDTILHI-QD---KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYI 402 (485)
Q Consensus 334 ~-~~~~d~~~~~-~~~-----~~fD~i~~~~~~~~~-~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 402 (485)
+ ++.+|+.+.+ +.. .+||+|++..+++.. +| ...+++++.++|||||.|++.............
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~----- 210 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG----- 210 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT-----
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC-----
Confidence 3 6677887753 322 259999999999887 34 556799999999999999998654332110000
Q ss_pred HhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 403 KQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
.....-..+.+.+++.++++||++...+
T Consensus 211 ~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 211 HKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp EEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred EecccccCCHHHHHHHHHHcCCEEEecc
Confidence 0001123578999999999999998877
No 382
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=6.4e-07 Score=81.76 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=75.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC-
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN- 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~- 348 (485)
..++++++...+.++..|||||+|.|.++..|+++ +.+|+++++++.+++..++... ...+++++.+|+...+++.-
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchhhc
Confidence 45788999999999999999999999999999999 6799999999999999999875 34589999999999887643
Q ss_pred CccEEEEccc
Q 043471 349 SFDVIYSRDT 358 (485)
Q Consensus 349 ~fD~i~~~~~ 358 (485)
.++.|+++-.
T Consensus 95 ~~~~vVaNlP 104 (259)
T COG0030 95 QPYKVVANLP 104 (259)
T ss_pred CCCEEEEcCC
Confidence 6788888744
No 383
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.53 E-value=1.3e-07 Score=91.93 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=89.9
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC----CCCeEEEEeecc
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH----FENVKFMCADVT 110 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~----~~~~~~~~~d~~ 110 (485)
..+++...+..+..... |++|||+=|=||.++++.|..|+ +||+||+|..+++.|+++... ...+.|+++|+.
T Consensus 201 fFlDqR~~R~~l~~~~~--GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 201 FFLDQRDNRRALGELAA--GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred eeHHhHHHHHHHhhhcc--CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 33444444444444333 89999999999999999999998 999999999999999997432 236899999997
Q ss_pred CCCC--CCCCCCeeEEEhh------hh-hhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 111 SPDL--TFSEDSVDMMFSN------WL-LMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 111 ~~~~--~~~~~~~D~v~~~------~~-~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+.-- .-...+||+|+.- .- ..+--...+...+..+.++|+|||+++++...
T Consensus 279 ~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 279 KWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 6410 1123489999963 00 01111233778899999999999999997654
No 384
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.52 E-value=7.1e-07 Score=78.22 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=89.6
Q ss_pred CcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC-CCCCCeeEEEhhhhhhccC
Q 043471 56 KTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT-FSEDSVDMMFSNWLLMYLS 134 (485)
Q Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~D~v~~~~~~~~~~ 134 (485)
.++|||||=+......-. .-.+|+.||+++ ..-.+.++|..+.++| -+.+.||+|.++.++.++|
T Consensus 53 lrlLEVGals~~N~~s~~-~~fdvt~IDLns-------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP 118 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS-GWFDVTRIDLNS-------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVP 118 (219)
T ss_pred ceEEeecccCCCCccccc-CceeeEEeecCC-------------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCC
Confidence 599999998665443321 123699999987 2345678888775554 3467999999999999998
Q ss_pred hHH-HHHHHHHHHhhcccCcE-----EEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCCC
Q 043471 135 DKE-VEKLAERMVKWLKVGGY-----IFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASG 197 (485)
Q Consensus 135 ~~~-~~~~l~~~~~~L~pgG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 197 (485)
++. +-++++.+++.|+|+|. +++.-+.. --.+..|.+.+.|..+++..||.....
T Consensus 119 ~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~--------Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 119 DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP--------CVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch--------HhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 654 88999999999999999 77754432 123455668899999999999965443
No 385
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.50 E-value=5.8e-07 Score=88.23 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=78.3
Q ss_pred CCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
+.+|||++||+|.++..++...+ .+|+++|+++.+++.+++++...+ .++++.++|+..+....++||+|+... +
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999987655 489999999999999999885332 246688888865421146799999954 2
Q ss_pred cCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 362 IQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 362 ~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
..+..++..+.+.++|||.++++
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEE
Confidence 45577888878889999999998
No 386
>PLN02823 spermine synthase
Probab=98.49 E-value=9.9e-07 Score=84.76 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC-----CCCeEEEEccCCCC-CCCCCCccEEEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL-----KCSVEFEVADCTKK-TYPENSFDVIYS 355 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~-----~~~i~~~~~d~~~~-~~~~~~fD~i~~ 355 (485)
...+||.||+|.|..+..+++.. ..+++.+|+++.+++.|++.+... ..+++++.+|.... ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 34699999999999999888754 358999999999999999987522 36899999988663 223578999998
Q ss_pred ccccccc---C----CHHHHHH-HHHhcCCCCcEEEEE
Q 043471 356 RDTILHI---Q----DKPALFK-SFFKWLKPGGTVLIS 385 (485)
Q Consensus 356 ~~~~~~~---~----~~~~~l~-~~~~~LkpgG~l~i~ 385 (485)
-.. .-. + -..++++ .+++.|+|||.+++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 521 110 0 1346787 899999999998775
No 387
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.48 E-value=1.7e-06 Score=86.76 Aligned_cols=110 Identities=24% Similarity=0.245 Sum_probs=84.6
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC-CCCCCccEEEE
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT-YPENSFDVIYS 355 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~-~~~~~fD~i~~ 355 (485)
...++.+|||++||.|.=+..+++.+ ...+++.|+++.-++..++++..++ .++.+.+.|...+. ...+.||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 56889999999999999999999876 3589999999999999999988655 46778888877642 22367999995
Q ss_pred ----cc--cccccCC----------------HHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 356 ----RD--TILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 356 ----~~--~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
++ ++..-++ ..++|..+.+.|||||+++-++...
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 32 2221111 2567899999999999998886543
No 388
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.46 E-value=1.1e-07 Score=83.36 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=88.2
Q ss_pred CcCccChhhhHHHhccCCC--CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCC---CCeEEEEe
Q 043471 34 KASDLDKEERPEVLSLLPP--YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHF---ENVKFMCA 107 (485)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~ 107 (485)
...+.....++.+...+.. .++.++||+-||+|.+++..+.+|+ +|+.||.++..++..+++.... .++..+.+
T Consensus 20 ~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~ 99 (183)
T PF03602_consen 20 NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG 99 (183)
T ss_dssp TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence 4556667788888888775 4899999999999999999888875 8999999999999888875432 35888888
Q ss_pred eccCCC--CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHH--hhcccCcEEEEEec
Q 043471 108 DVTSPD--LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMV--KWLKVGGYIFFRES 160 (485)
Q Consensus 108 d~~~~~--~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 160 (485)
|+...- +.....+||+|++- ..+..... ...++..+. .+|+++|.+++...
T Consensus 100 d~~~~l~~~~~~~~~fDiIflD-PPY~~~~~-~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 100 DAFKFLLKLAKKGEKFDIIFLD-PPYAKGLY-YEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp SHHHHHHHHHHCTS-EEEEEE---STTSCHH-HHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CHHHHHHhhcccCCCceEEEEC-CCcccchH-HHHHHHHHHHCCCCCCCEEEEEEec
Confidence 865321 11135799999986 33333431 367888877 79999999998654
No 389
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.46 E-value=5.1e-07 Score=84.73 Aligned_cols=89 Identities=19% Similarity=0.186 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--C
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--Y 345 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--~ 345 (485)
-++.++++.+.+.++..+||.+||.|..+..+++.++ .+|+|+|.++.+++.|++++.. ..+++++++|+.++. .
T Consensus 6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHH
Confidence 3567889999888999999999999999999999873 7999999999999999998866 568999999998753 1
Q ss_pred CC--CCccEEEEcccc
Q 043471 346 PE--NSFDVIYSRDTI 359 (485)
Q Consensus 346 ~~--~~fD~i~~~~~~ 359 (485)
+. .++|.|++....
T Consensus 85 ~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 85 AEGLGKVDGILLDLGV 100 (296)
T ss_pred HcCCCccCEEEECCCc
Confidence 22 279999996543
No 390
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.46 E-value=4.4e-07 Score=88.57 Aligned_cols=108 Identities=12% Similarity=0.121 Sum_probs=73.6
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCC------C
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLT------F 116 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~------~ 116 (485)
.+++.+... +.+|||+|||+|.+++.|++...+|+|+|+++++++.|+++.. ...+++++.+|+.+.... +
T Consensus 189 ~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 267 (353)
T TIGR02143 189 WACEVTQGS-KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREF 267 (353)
T ss_pred HHHHHhhcC-CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccc
Confidence 334444322 3479999999999999999988899999999999999998753 234799999998763110 0
Q ss_pred ---C-----CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 117 ---S-----EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 117 ---~-----~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
. ...||+|+.. ....+- .+.+++.+. +|+++++++..
T Consensus 268 ~~~~~~~~~~~~~d~v~lD--PPR~G~--~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 268 RRLKGIDLKSYNCSTIFVD--PPRAGL--DPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred ccccccccccCCCCEEEEC--CCCCCC--cHHHHHHHH---cCCcEEEEEcC
Confidence 0 1137988874 112221 234555554 48899999743
No 391
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.45 E-value=1.1e-06 Score=80.82 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=79.5
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCCCCccE
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
+++...--.++-|||+|||+|.++...++....+|++++. .+|.++|++.+++. ..+|.++.+.+++..+| ++.|+
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~Dv 246 (517)
T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDV 246 (517)
T ss_pred HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccE
Confidence 3333323346789999999999999888874459999997 57889999988754 47899999999998876 78999
Q ss_pred EEEcccccccC--CHHHHHHHHHhcCCCCcEEEEE
Q 043471 353 IYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 353 i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
|++-.+=.-+- ..-+..-.+++.|||.|.++=+
T Consensus 247 iISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 247 IISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred EEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 99954322221 1222233456999999997543
No 392
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.44 E-value=3.9e-07 Score=89.35 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCC--------------C
Q 043471 55 GKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFS--------------E 118 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~--------------~ 118 (485)
+.+|||++||+|.+++.+++...+|+|+|+++.+++.|+++.. ...+++++.+|+.+.--.+. .
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 3579999999999999999888899999999999999998753 23489999999876310010 1
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
.+||+|+.. .....- .+++++.+.+ |+++++++..
T Consensus 287 ~~~D~v~lD--PPR~G~--~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 287 YNFSTIFVD--PPRAGL--DDETLKLVQA---YERILYISCN 321 (362)
T ss_pred CCCCEEEEC--CCCCCC--cHHHHHHHHc---cCCEEEEEeC
Confidence 258999875 122221 2345555544 7888888743
No 393
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.44 E-value=1.8e-06 Score=75.56 Aligned_cols=124 Identities=24% Similarity=0.251 Sum_probs=91.1
Q ss_pred EEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 286 KVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
+++|||+|.|.-+..++-.. ..+++.+|....-+...+.....++ .|+++++..+++ +....+||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~---- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA---- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc----
Confidence 89999999999888877655 6799999999988887777665444 379999999988 4456889999998753
Q ss_pred CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 364 DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
....+++-+...|++||.+++.-- .. ... ........++..|.+...+...
T Consensus 126 ~l~~l~~~~~~~l~~~G~~l~~KG---~~-----~~~----------El~~~~~~~~~~~~~~~~v~~~ 176 (184)
T PF02527_consen 126 PLDKLLELARPLLKPGGRLLAYKG---PD-----AEE----------ELEEAKKAWKKLGLKVLSVPEF 176 (184)
T ss_dssp SHHHHHHHHGGGEEEEEEEEEEES---S-------HH----------HHHTHHHHHHCCCEEEEEEEEE
T ss_pred CHHHHHHHHHHhcCCCCEEEEEcC---CC-----hHH----------HHHHHHhHHHHhCCEEeeeccc
Confidence 678899999999999999888721 10 000 1234556677777777766544
No 394
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.43 E-value=1e-06 Score=88.36 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=83.6
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
.+.+|.+|||++||.|.=+..++.. ...|++.|+++..++..++++... .++.....|...+.-. ..+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~-~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA-LPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh-chhhcCeEE
Confidence 6678999999999999999999886 248999999999999888876543 4677888887763212 235799999
Q ss_pred ----hhhh--hhccChH--------------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 126 ----SNWL--LMYLSDK--------------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 126 ----~~~~--~~~~~~~--------------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
|++. +..-++. ...++|.++.++|||||+|+-++.++.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 6543 2221111 025788999999999999988877654
No 395
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.43 E-value=4.4e-07 Score=79.66 Aligned_cols=123 Identities=17% Similarity=0.135 Sum_probs=85.6
Q ss_pred CchHHHHHHHHHcCC--CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCC
Q 043471 267 GGIETTKEFVAKLDL--KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTK 342 (485)
Q Consensus 267 ~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~ 342 (485)
.....-+.++..+.. -++.++||+-||+|.++...+.+...+|+.||.++..++..++++..++ .++.++..|...
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~ 103 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK 103 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH
Confidence 333444555555543 3688999999999999999998844599999999999999999987443 457888888543
Q ss_pred C----CCCCCCccEEEEcccccccCCHHHHHHHHH--hcCCCCcEEEEEeccc
Q 043471 343 K----TYPENSFDVIYSRDTILHIQDKPALFKSFF--KWLKPGGTVLISDYCK 389 (485)
Q Consensus 343 ~----~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 389 (485)
. .....+||+|++-.....-.....++..+. .+|+++|.+++.....
T Consensus 104 ~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 104 FLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 2 113678999999776543211477888887 7999999999886443
No 396
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=3e-07 Score=83.44 Aligned_cols=111 Identities=25% Similarity=0.358 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCe-EEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV-EFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i-~~~~~d~~~~~~~~~ 348 (485)
..+...++... .+..++|+|||.|..+. ....+.++|.|++...+..++.. +. ....+|+..+|+.+.
T Consensus 34 p~v~qfl~~~~--~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~------~~~~~~~ad~l~~p~~~~ 102 (293)
T KOG1331|consen 34 PMVRQFLDSQP--TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS------GGDNVCRADALKLPFREE 102 (293)
T ss_pred HHHHHHHhccC--CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC------CCceeehhhhhcCCCCCC
Confidence 45666666654 37789999999985432 22346899999999998887654 23 577899999999999
Q ss_pred CccEEEEcccccccC---CHHHHHHHHHhcCCCCcEEEEEecccCC
Q 043471 349 SFDVIYSRDTILHIQ---DKPALFKSFFKWLKPGGTVLISDYCKSF 391 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 391 (485)
+||.+++..++||+. -...+++++.|+|+|||...+..+....
T Consensus 103 s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 103 SFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 999999999999994 4678999999999999999888665543
No 397
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.42 E-value=3.4e-07 Score=85.94 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=65.9
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCC-
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSED- 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~- 119 (485)
+++++.+.+.++..+||.+||.|.++..+++.. .+|+|+|.++++++.|+++.....+++++++|..++.-..+.+
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCC
Confidence 577888887888999999999999999999883 6899999999999999988654347888888887642111122
Q ss_pred -CeeEEEhh
Q 043471 120 -SVDMMFSN 127 (485)
Q Consensus 120 -~~D~v~~~ 127 (485)
++|.|++.
T Consensus 89 ~~vDgIl~D 97 (296)
T PRK00050 89 GKVDGILLD 97 (296)
T ss_pred CccCEEEEC
Confidence 67777753
No 398
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.42 E-value=5.7e-07 Score=88.25 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCcchHHHHhh-c-CcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAKK-A-GHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
+.+|||++||+|..++.++.. + .+|+++|+++++++.++++.. ...++.+.++|+..+ + ...+.||+|++.= +
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~-l-~~~~~fD~V~lDP-~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL-L-HEERKFDVVDIDP-F 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH-H-hhcCCCCEEEECC-C
Confidence 468999999999999999876 3 389999999999999988642 234677899998763 1 1145799999852 1
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.. ...++..+.+.++|||+++++
T Consensus 135 ---Gs--~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ---GS--PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---CC--cHHHHHHHHHHhcCCCEEEEE
Confidence 22 236888878889999999997
No 399
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.40 E-value=2.8e-06 Score=79.34 Aligned_cols=101 Identities=20% Similarity=0.165 Sum_probs=80.3
Q ss_pred CEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-----CCeEEEEccCCCCC-CCCCCccEEEEcc
Q 043471 285 QKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-----CSVEFEVADCTKKT-YPENSFDVIYSRD 357 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-----~~i~~~~~d~~~~~-~~~~~fD~i~~~~ 357 (485)
.+||-||.|.|..++.+.+.. -.+++.+|+.+..++.|++.+.... .+++++..|..+.- -..++||+|++-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999999875 3599999999999999999887332 68899999986642 1124899999853
Q ss_pred cccccC----CHHHHHHHHHhcCCCCcEEEEE
Q 043471 358 TILHIQ----DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 358 ~~~~~~----~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.=.--+ -...+++.+++.|+|+|.++..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 221001 2478999999999999999888
No 400
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.39 E-value=1.3e-06 Score=84.88 Aligned_cols=103 Identities=29% Similarity=0.328 Sum_probs=82.7
Q ss_pred CCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhc--CCC-CCeEEEEccCCCCC----CCCCCccEEEE
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAI--GLK-CSVEFEVADCTKKT----YPENSFDVIYS 355 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~--~~~-~~i~~~~~d~~~~~----~~~~~fD~i~~ 355 (485)
|++||++-|=||.++.+.+.. |+ +||+||.|...++.|++++. ++. .++.++++|+.+.- -...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 899999999999999999877 76 99999999999999999986 332 45789999986641 12458999998
Q ss_pred ccc-c--------cccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 356 RDT-I--------LHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 356 ~~~-~--------~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
-.. | .-..+...++..+.++|+|||.++++..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 432 1 1124677889999999999999999853
No 401
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.39 E-value=2.2e-06 Score=80.34 Aligned_cols=105 Identities=26% Similarity=0.321 Sum_probs=82.4
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC-
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF- 116 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~- 116 (485)
.++...+.+++.+...++..|||||+|+|.++..|++.+.+|+++|+++.+.+..+++....++++++.+|+.+++.+.
T Consensus 14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 4566778899998888999999999999999999999999999999999999999998776679999999999855431
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHh
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVK 147 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~ 147 (485)
..+...+|+++. .++++. .++.++..
T Consensus 94 ~~~~~~~vv~Nl-Py~is~----~il~~ll~ 119 (262)
T PF00398_consen 94 LKNQPLLVVGNL-PYNISS----PILRKLLE 119 (262)
T ss_dssp CSSSEEEEEEEE-TGTGHH----HHHHHHHH
T ss_pred hcCCceEEEEEe-cccchH----HHHHHHhh
Confidence 124566777764 335544 45555554
No 402
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.8e-05 Score=71.18 Aligned_cols=134 Identities=22% Similarity=0.295 Sum_probs=103.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCC-
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYP- 346 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~- 346 (485)
...++..+.+.||.+|||-|.|+|.++.++++..+ .+++..|+-..-.+.|++.+. +++.++++.+-|++..-|.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 55778888999999999999999999999999872 499999999888888888776 5678999999999987654
Q ss_pred -CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE-ecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCC
Q 043471 347 -ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS-DYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGF 424 (485)
Q Consensus 347 -~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 424 (485)
+..+|.|+. -++.+-.++--++..||.+|.-+++ .++- + -.+.-.+.|.+.||
T Consensus 174 ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFSPCI----------E----------Qvqrtce~l~~~gf 228 (314)
T KOG2915|consen 174 KSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFSPCI----------E----------QVQRTCEALRSLGF 228 (314)
T ss_pred cccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEeccHHH----------H----------HHHHHHHHHHhCCC
Confidence 457888876 4677888888888899988753333 1110 0 12345678888999
Q ss_pred eEEEEe
Q 043471 425 VDIIAE 430 (485)
Q Consensus 425 ~~~~~~ 430 (485)
..+..-
T Consensus 229 ~~i~~v 234 (314)
T KOG2915|consen 229 IEIETV 234 (314)
T ss_pred ceEEEE
Confidence 876543
No 403
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=5e-06 Score=70.11 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=84.1
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEh
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFS 126 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~ 126 (485)
.......+||||||+|..+-+|++. +..+.++|++|.+.+...+.+... .++..+++|+.+- ...+++|+++-
T Consensus 40 ~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~---l~~~~VDvLvf 116 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG---LRNESVDVLVF 116 (209)
T ss_pred hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh---hccCCccEEEE
Confidence 3344678999999999999999987 346889999999998766543221 3578888887652 23478888765
Q ss_pred hhh---------------hhcc----ChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHh
Q 043471 127 NWL---------------LMYL----SDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVF 187 (485)
Q Consensus 127 ~~~---------------~~~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (485)
+=. ..+. +.....+++..+-.+|.|.|.+++.....+ .++.+-.++
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N---------------~p~ei~k~l 181 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN---------------KPKEILKIL 181 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc---------------CHHHHHHHH
Confidence 411 1111 122245777778889999999999644221 445555677
Q ss_pred hhcce
Q 043471 188 KECQI 192 (485)
Q Consensus 188 ~~~~~ 192 (485)
++-|+
T Consensus 182 ~~~g~ 186 (209)
T KOG3191|consen 182 EKKGY 186 (209)
T ss_pred hhccc
Confidence 77665
No 404
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.35 E-value=5.7e-06 Score=76.31 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=89.6
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC-----------------------------------
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH----------------------------------- 98 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~----------------------------------- 98 (485)
.+.+||--|||.|+++..+|.+|..|.|.|.|--|+=..+-....
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 456899999999999999999999999999999996443332110
Q ss_pred -------CCCeEEEEeeccCCCCCCC---CCCeeEEEhhhhhhccC-hHHHHHHHHHHHhhcccCcEEEEEeccCCCCCc
Q 043471 99 -------FENVKFMCADVTSPDLTFS---EDSVDMMFSNWLLMYLS-DKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD 167 (485)
Q Consensus 99 -------~~~~~~~~~d~~~~~~~~~---~~~~D~v~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~ 167 (485)
.++++...||..+.. .+ .++||+|+..+ ++. ..+.-++++.+.++|||||+.+=--+.......
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y--~~~~~~~~~d~VvT~F---FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVY--GPDENKGSFDVVVTCF---FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred cccccCCCCceeEecCccEEec--CCcccCCcccEEEEEE---EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 024566666666532 22 37999998873 333 344889999999999999953322222211111
Q ss_pred cccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 168 SKRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
.........-.+.+.+..+.++.||...
T Consensus 211 ~~~~~~~sveLs~eEi~~l~~~~GF~~~ 238 (270)
T PF07942_consen 211 MSIPNEMSVELSLEEIKELIEKLGFEIE 238 (270)
T ss_pred CCCCCCcccCCCHHHHHHHHHHCCCEEE
Confidence 0000111122367889999999998553
No 405
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.35 E-value=2.5e-06 Score=83.34 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=75.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC------
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT------ 344 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~------ 344 (485)
+..+++.+...+ .+|||++||+|.++..+++.. .+|+|+|+++.+++.|++++...+ .+++++.+|+.+..
T Consensus 187 ~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 264 (353)
T TIGR02143 187 LEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGV 264 (353)
T ss_pred HHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhc
Confidence 334444443333 479999999999999999875 599999999999999999986443 36899999986531
Q ss_pred --C---C-----CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 345 --Y---P-----ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 345 --~---~-----~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+ . ...||+|+.-.. .-.-.+.+++.+.+ |++.++++.
T Consensus 265 ~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 265 REFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YERILYISC 311 (353)
T ss_pred cccccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCcEEEEEc
Confidence 0 0 123799888554 11223455555544 788888884
No 406
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.35 E-value=6e-07 Score=79.95 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=71.5
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCc-EEEEeCChHHHHHHHHHc----------C-CCCCeEE
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGH-VIALDFIDSVIKKNEEVN----------G-HFENVKF 104 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-v~giD~s~~~~~~a~~~~----------~-~~~~~~~ 104 (485)
........+++.+...+++.++|||||.|......+-. +++ ++|||+.+...+.|+... + ...++++
T Consensus 26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 44456678888999889999999999999988776654 665 999999999887766421 1 1246888
Q ss_pred EEeeccCCCCC-CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 105 MCADVTSPDLT-FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 105 ~~~d~~~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
..+|+.+.+.. ..-...|+|++++.. ++++ ....+.+....||||.+++-
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-TT-EEEE
T ss_pred eccCccccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCCCCEEEE
Confidence 88887653211 001357999998753 3332 55677888889999887654
No 407
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.34 E-value=1.2e-06 Score=78.13 Aligned_cols=115 Identities=23% Similarity=0.353 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhc---------CC-CCCeEEEEc
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAI---------GL-KCSVEFEVA 338 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~---------~~-~~~i~~~~~ 338 (485)
..+..+++.+.+++++..+|||||.|......+...++ +.+||++.+...+.|+.... +. ..++++..+
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 56778899999999999999999999998887766666 49999999988887765332 11 246778888
Q ss_pred cCCCCCCCC---CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 339 DCTKKTYPE---NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 339 d~~~~~~~~---~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
|+.+.++.. ...|+|++++... -++....|.++...||||-+++-.
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred CccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEEC
Confidence 887643211 3479999988653 235556678888889998876543
No 408
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.33 E-value=2.3e-07 Score=79.38 Aligned_cols=136 Identities=19% Similarity=0.269 Sum_probs=91.2
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
..++||+|+|.|.++..++..+. .|++++.|..|....+++- ..+. ...+..-.+-+||+|.|.+.+.--.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe-evyATElS~tMr~rL~kk~------ynVl--~~~ew~~t~~k~dli~clNlLDRc~ 183 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE-EVYATELSWTMRDRLKKKN------YNVL--TEIEWLQTDVKLDLILCLNLLDRCF 183 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH-HHHHHHhhHHHHHHHhhcC------Ccee--eehhhhhcCceeehHHHHHHHHhhc
Confidence 46999999999999999988753 7999999999998877652 2221 1111111234699999999987777
Q ss_pred CHHHHHHHHHhcCCC-CcEEEEEecccCC--------CCCChhHHHHHHhcCCCCC-CHHHHHHHHHhCCCeEEEE
Q 043471 364 DKPALFKSFFKWLKP-GGTVLISDYCKSF--------GTPSVEFSEYIKQRGYDLH-DVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 364 ~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~aGf~~~~~ 429 (485)
++-++|+.++.+|+| +|+++++-..... +.+. .-..+..-.|..+. ....+.++|+++||.+..+
T Consensus 184 ~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~-rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veaw 258 (288)
T KOG3987|consen 184 DPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPL-RPDNLLENNGRSFEEEVARFMELLRNCGYRVEAW 258 (288)
T ss_pred ChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcC-CchHHHHhcCccHHHHHHHHHHHHHhcCchhhhh
Confidence 899999999999999 9998887432211 1111 11112222232211 2346778899999976543
No 409
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.32 E-value=7.2e-06 Score=71.37 Aligned_cols=102 Identities=35% Similarity=0.566 Sum_probs=75.3
Q ss_pred EEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCC--eEEEEccCCC--CCCCC-CCccEEEEcccc
Q 043471 287 VLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCS--VEFEVADCTK--KTYPE-NSFDVIYSRDTI 359 (485)
Q Consensus 287 vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~--i~~~~~d~~~--~~~~~-~~fD~i~~~~~~ 359 (485)
++|+|||+|... .+..... ..++|+|+++.++..++..... ... +.+...|... .++.. ..||++ +....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999866 3333322 4899999999999986655432 212 6788888776 67766 489999 54444
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEecccCC
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISDYCKSF 391 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 391 (485)
.+..+....+.++.+.|+|+|.+++.......
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 44434889999999999999999998765543
No 410
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.31 E-value=4.9e-07 Score=77.46 Aligned_cols=121 Identities=20% Similarity=0.198 Sum_probs=87.7
Q ss_pred hhhhcCCCcCccChhhhHHHhccCCC---CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeE
Q 043471 27 EAMMLDSKASDLDKEERPEVLSLLPP---YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVK 103 (485)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~ 103 (485)
+.+.....-+-.+++.-+.++..-++ ..+.++||+|+|.|.++..++....+|++.++|..|....+++.- +
T Consensus 82 NG~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~y-----n 156 (288)
T KOG3987|consen 82 NGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNY-----N 156 (288)
T ss_pred ccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCC-----c
Confidence 44444444455666666666655432 245799999999999999999998899999999999998887532 1
Q ss_pred EEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhccc-CcEEEEE
Q 043471 104 FMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKV-GGYIFFR 158 (485)
Q Consensus 104 ~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~ 158 (485)
.+. .+ + +.--+-+||+|.|.+.+...-+ .-+.++.++.+|+| +|.++++
T Consensus 157 Vl~-~~-e--w~~t~~k~dli~clNlLDRc~~--p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 157 VLT-EI-E--WLQTDVKLDLILCLNLLDRCFD--PFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred eee-eh-h--hhhcCceeehHHHHHHHHhhcC--hHHHHHHHHHHhccCCCcEEEE
Confidence 111 11 1 2112347999999999877666 34899999999999 8988875
No 411
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.31 E-value=3.5e-06 Score=79.24 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=79.2
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCCCeEEE--EeeccCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFENVKFM--CADVTSPDLTFSE 118 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~~--~~d~~~~~~~~~~ 118 (485)
.++.+.++...+.+|||+|||+|..+..+.+. -.+++++|.|+.|++.++.......+.... .........++
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 100 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF-- 100 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--
Confidence 34444456667889999999999876555543 358999999999999998876543321111 11111101112
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
...|+|+++++|..+++..+.++++++.+.+.+ .|+|.|+..
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 234999999999999877788999999888876 788876653
No 412
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.30 E-value=3.4e-06 Score=80.22 Aligned_cols=113 Identities=25% Similarity=0.269 Sum_probs=90.2
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCc-EEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGH-VIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLT 115 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~ 115 (485)
..++.++++.... |.+|||+=||.|.+++.+|+.|.. |+++|++|.++...++++. -.+.+..+++|.... .
T Consensus 176 ~~ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev--~ 251 (341)
T COG2520 176 STERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV--A 251 (341)
T ss_pred hHHHHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh--h
Confidence 3677788887665 899999999999999999999875 9999999999999988643 223589999999884 3
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
...+.+|.|+.+.. .. ...++..+.+.+++||.+...+...
T Consensus 252 ~~~~~aDrIim~~p----~~--a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 252 PELGVADRIIMGLP----KS--AHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred hccccCCEEEeCCC----Cc--chhhHHHHHHHhhcCcEEEEEeccc
Confidence 33388999998742 12 3367888888999999998876654
No 413
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.29 E-value=7.5e-06 Score=71.23 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=74.1
Q ss_pred EEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCCC--eEEEEeeccCCCCCCCC-CCeeEEEhhhhhh
Q 043471 58 VLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFEN--VKFMCADVTSPDLTFSE-DSVDMMFSNWLLM 131 (485)
Q Consensus 58 vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~~--~~~~~~d~~~~~~~~~~-~~~D~v~~~~~~~ 131 (485)
++|+|||+|... .+++. +..++|+|+++.++..++........ +.+..++.....+++.. ..||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 44443 24899999999999986665432122 68888887652244555 4899994444444
Q ss_pred ccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 132 YLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+.. ....+.++.+.++|+|.+++......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 444 56899999999999999999866543
No 414
>PRK00536 speE spermidine synthase; Provisional
Probab=98.29 E-value=8.2e-06 Score=75.29 Aligned_cols=95 Identities=13% Similarity=0.005 Sum_probs=74.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC----C-CCCeEEEEccCCCCCCCCCCccEEEEc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG----L-KCSVEFEVADCTKKTYPENSFDVIYSR 356 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~----~-~~~i~~~~~d~~~~~~~~~~fD~i~~~ 356 (485)
+..++||=||.|.|..++.+++. ..+|+-+|+++.+++.+++.++. + .++++++. .+.+ -..++||+|++-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCEEEEc
Confidence 44579999999999999999987 45999999999999999996652 1 24666654 2221 123689999986
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.. ..+.+.+.+++.|+|||.++.+
T Consensus 147 s~-----~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 147 QE-----PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CC-----CChHHHHHHHHhcCCCcEEEEC
Confidence 43 3478889999999999999887
No 415
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.28 E-value=2.3e-05 Score=74.67 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=79.3
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-----CCEEEEEeCCHHHHHHHHHHhc-CCCCCeEE--EEccCCCC-
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-----DVHVVGIDLSINMISFALERAI-GLKCSVEF--EVADCTKK- 343 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~-~~~~~i~~--~~~d~~~~- 343 (485)
..+.+. +.++..|+|+|||.|.=+..|.+.+ ..+++++|+|..+++.+.+++. ..-..+++ +++|+.+.
T Consensus 68 ~~Ia~~--i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 68 SDIAAS--IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred HHHHHh--cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH
Confidence 344444 3566789999999998766655543 3689999999999999999887 33234544 77887552
Q ss_pred ---CC--CCCCccEEEEcc-cccccC--CHHHHHHHHHh-cCCCCcEEEEE
Q 043471 344 ---TY--PENSFDVIYSRD-TILHIQ--DKPALFKSFFK-WLKPGGTVLIS 385 (485)
Q Consensus 344 ---~~--~~~~fD~i~~~~-~~~~~~--~~~~~l~~~~~-~LkpgG~l~i~ 385 (485)
+- ......+|+..+ ++..++ ....+|+++++ .|+|||.++|.
T Consensus 146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 11 123456777654 677774 34568999999 99999999886
No 416
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.28 E-value=5.3e-07 Score=79.71 Aligned_cols=109 Identities=28% Similarity=0.321 Sum_probs=68.2
Q ss_pred HHHHHHHHHcC-CCCC--CEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-
Q 043471 270 ETTKEFVAKLD-LKPG--QKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK- 343 (485)
Q Consensus 270 ~~~~~~~~~~~-~~~~--~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~- 343 (485)
-++.++.+.+. +.++ .+|||+||++|+++..+.++. ..+|+|+|+.+.. . ..++....+|+.+.
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~-~~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------P-LQNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S--TTEEBTTGGGEEEE
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------c-ccceeeeecccchhh
Confidence 35667777777 5554 899999999999999999986 4799999998761 0 01344444444321
Q ss_pred -------CCC--CCCccEEEEcccccccC----C-------HHHHHHHHHhcCCCCcEEEEEecc
Q 043471 344 -------TYP--ENSFDVIYSRDTILHIQ----D-------KPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 344 -------~~~--~~~fD~i~~~~~~~~~~----~-------~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.++ .++||+|+|-.+..... | ....+.-+...|+|||.+++-.+.
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred HHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 011 26899999976332221 1 223345555779999999887544
No 417
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.28 E-value=4.6e-06 Score=81.79 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=71.3
Q ss_pred CEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC-C-CC--------------C
Q 043471 285 QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK-T-YP--------------E 347 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~-~-~~--------------~ 347 (485)
.+|||++||+|.++..+++.. .+|+|+|+++.+++.|++++...+ .+++++.+|+.+. + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 579999999999999998874 599999999999999999886433 3789999998652 1 10 1
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.+||+|+.-..- ..-.+++++.+.+ |++.++++.
T Consensus 287 ~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 287 YNFSTIFVDPPR--AGLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred CCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEEe
Confidence 258999986542 1223455555544 788888884
No 418
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1.5e-05 Score=79.25 Aligned_cols=113 Identities=27% Similarity=0.314 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCC--
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYP-- 346 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~-- 346 (485)
.++...++.+...++.+|||+=||.|.++..+|++ ..+|+|+|+++.+++.|+++++.++ .|++|..++.++....
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence 34566667777788899999999999999999987 5699999999999999999988554 4699999998886422
Q ss_pred -CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 347 -ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 347 -~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...+|.|+....=.-. .+.+++.+.+ ++|-..+++++
T Consensus 359 ~~~~~d~VvvDPPR~G~--~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 359 EGYKPDVVVVDPPRAGA--DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred ccCCCCEEEECCCCCCC--CHHHHHHHHh-cCCCcEEEEeC
Confidence 3578999984321111 2245555554 67888898884
No 419
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.25 E-value=1.8e-05 Score=68.40 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=90.6
Q ss_pred CCchHHHHHHHHHcCC--CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCC
Q 043471 266 TGGIETTKEFVAKLDL--KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCT 341 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~ 341 (485)
+.....-+.++..+.. -.|.++||+=+|+|.++...+.+....++.||.+...+...++++..++ .+..++..|..
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~ 103 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL 103 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH
Confidence 3333445566777754 4788999999999999999999955699999999999999999988665 77888888887
Q ss_pred CC--CCCC-CCccEEEEccccccc-CCHHHHHHH--HHhcCCCCcEEEEEec
Q 043471 342 KK--TYPE-NSFDVIYSRDTILHI-QDKPALFKS--FFKWLKPGGTVLISDY 387 (485)
Q Consensus 342 ~~--~~~~-~~fD~i~~~~~~~~~-~~~~~~l~~--~~~~LkpgG~l~i~~~ 387 (485)
.. .... ++||+|+.-..++.- -+....+.. -...|+|+|.+++...
T Consensus 104 ~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 104 RALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 43 1112 359999998777621 222333433 4578999999999854
No 420
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.25 E-value=8.7e-06 Score=74.45 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=86.0
Q ss_pred CEEEEECCCC--ChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCCC--CC----CCCcc--
Q 043471 285 QKVLDVGCGI--GGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKKT--YP----ENSFD-- 351 (485)
Q Consensus 285 ~~vLDiGcG~--G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~~--~~----~~~fD-- 351 (485)
...||||||- -.....++++. .++|+.+|..|..+..++..+.+... ...++.+|+.+.. +. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 4899999994 34566676655 68999999999999999998876441 3789999987631 00 12233
Q ss_pred ---EEEEcccccccC---CHHHHHHHHHhcCCCCcEEEEEecccCCCCCC-hhHHHHHHhcC--CCCCCHHHHHHHHHhC
Q 043471 352 ---VIYSRDTILHIQ---DKPALFKSFFKWLKPGGTVLISDYCKSFGTPS-VEFSEYIKQRG--YDLHDVKSYGQMLKDA 422 (485)
Q Consensus 352 ---~i~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~~a 422 (485)
.|+...++||++ ++..+++.++..|.||.+|+|+.......... ..........+ ..+.|.+++..+|.
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~-- 227 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD-- 227 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT--
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC--
Confidence 577788999994 58899999999999999999997765322111 22233333322 34567888888887
Q ss_pred CCeEE
Q 043471 423 GFVDI 427 (485)
Q Consensus 423 Gf~~~ 427 (485)
||+.+
T Consensus 228 g~elv 232 (267)
T PF04672_consen 228 GLELV 232 (267)
T ss_dssp TSEE-
T ss_pred CCccC
Confidence 88765
No 421
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.24 E-value=1.2e-05 Score=75.71 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCCeEE-EEccCCCCCCCCCCccEEEEcccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCSVEF-EVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~-~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
...+|||+|||+|..+..+.+.++ .+++++|.|+.|++.++..+......-.. ...+......+-.+.|+|++.++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 345999999999987766655442 48999999999999998876543311111 111111111122334999999999
Q ss_pred cccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 360 LHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 360 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
..+++ ...+++.+.+.+.+ .++|.+.+...+. ......++.|.+.|+.++
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf----------------~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF----------------RRIAEARDQLLEKGAHVV 164 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH----------------HHHHHHHHHHhhCCCceE
Confidence 98875 44556666665655 8888876543211 123456666676777665
No 422
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.23 E-value=4.8e-06 Score=80.44 Aligned_cols=118 Identities=25% Similarity=0.365 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhc--------CCCEEEEEeCCHHHHHHHHHHhc--CCC-CCeEEEEc
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADK--------FDVHVVGIDLSINMISFALERAI--GLK-CSVEFEVA 338 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~g~D~s~~~~~~a~~~~~--~~~-~~i~~~~~ 338 (485)
..+.-+++.+...++.+|+|.+||+|.++..+.+. ...+++|+|+++.++..|+-++. +.. ....+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 34455556667777889999999999999887763 25799999999999999887653 222 12357777
Q ss_pred cCCCCCCC--CCCccEEEEccccccc--C------C-------------HHHHHHHHHhcCCCCcEEEEEec
Q 043471 339 DCTKKTYP--ENSFDVIYSRDTILHI--Q------D-------------KPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 339 d~~~~~~~--~~~fD~i~~~~~~~~~--~------~-------------~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
|....+.. ...||+|+++..+.-. . + .-.++..+.+.|++||++++..+
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 76554432 4789999998655322 0 0 12478999999999999877754
No 423
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.23 E-value=3.4e-06 Score=78.85 Aligned_cols=112 Identities=29% Similarity=0.358 Sum_probs=79.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhc--CCC-CCeEEEEccCCCCC---
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAI--GLK-CSVEFEVADCTKKT--- 344 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~--~~~-~~i~~~~~d~~~~~--- 344 (485)
.+..+... ..+++|||+=|=||.++...+.. |+ +|+.||.|..+++.|++++. ++. .+++++..|+.+.-
T Consensus 114 nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~ 190 (286)
T PF10672_consen 114 NRKWVRKY--AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRL 190 (286)
T ss_dssp HHHHHHHH--CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHH
T ss_pred hHHHHHHH--cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHH
Confidence 33444443 34789999999999999987765 65 89999999999999999976 443 57889999886521
Q ss_pred CCCCCccEEEEccc-cc-----ccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 345 YPENSFDVIYSRDT-IL-----HIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 345 ~~~~~fD~i~~~~~-~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
-..++||+|++-.. |. -..+..++++.+.++|+|||.++++.
T Consensus 191 ~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 191 KKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp HHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 02468999999432 11 11356778999999999999988774
No 424
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=4.6e-05 Score=74.35 Aligned_cols=115 Identities=27% Similarity=0.324 Sum_probs=86.9
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC---CCCCC
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT---YPENS 349 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~---~~~~~ 349 (485)
..+...+|.+|||++++.|+=+.++++.. +..|+++|.++.-++..++++..++ .++...+.|....+ ...++
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCc
Confidence 45678899999999999999999888876 3467999999999999999998666 34677777776543 22236
Q ss_pred ccEEEEc------ccccccCC----------------HHHHHHHHHhcCCCCcEEEEEecccCC
Q 043471 350 FDVIYSR------DTILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCKSF 391 (485)
Q Consensus 350 fD~i~~~------~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~ 391 (485)
||.|+.- +++.--++ ..++|..+.++|||||.|+.++.....
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 9999983 33311121 456789999999999999998765443
No 425
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.20 E-value=2.2e-06 Score=80.02 Aligned_cols=109 Identities=20% Similarity=0.273 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcC--C--CCCeEEEEeeccCCCCC-CCCCCeeEEEh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNG--H--FENVKFMCADVTSPDLT-FSEDSVDMMFS 126 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~--~--~~~~~~~~~d~~~~~~~-~~~~~~D~v~~ 126 (485)
.++++|||+=|=||.++++.+..|+ +|++||.|..+++.++++.. . ..+++|++.|+.+.--. -..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 3578999999999999999988886 79999999999999998632 2 24789999999752100 12468999997
Q ss_pred h---hhhhcc-ChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 127 N---WLLMYL-SDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 127 ~---~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
- +.=.-. -...+.+.+..+.++|+|||.|+++..+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3 110011 1233778899999999999999886553
No 426
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.20 E-value=2.1e-05 Score=74.94 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=98.1
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
..+|..|||+=+|.|.++..+|.....+|+++|++|.+++..++++. +....+..+++|....+...+.+|-|++...
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 34589999999999999999998843459999999999999999986 4445688999999887654488999999653
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
.+...++..+.+.+++||.+-+.+......... .....+.......|.++
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~--------------~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE--------------RPEKRIKSAARKGGYKV 315 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEEeccchhhccc--------------chHHHHHHHHhhccCcc
Confidence 456778889999999999998887655432211 12345666666676543
No 427
>PRK00536 speE spermidine synthase; Provisional
Probab=98.19 E-value=8.3e-06 Score=75.25 Aligned_cols=105 Identities=15% Similarity=0.060 Sum_probs=79.1
Q ss_pred hhHHHhccCC---CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC------CCCCeEEEEeeccCC
Q 043471 42 ERPEVLSLLP---PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG------HFENVKFMCADVTSP 112 (485)
Q Consensus 42 ~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~ 112 (485)
...+++-+.+ .+.+++||=||.|-|...+.+.+...+|+.+|+.+++++.+++.+. ..++++++.. +.+
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~- 134 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD- 134 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-
Confidence 3445554443 4567899999999999999999986699999999999999999543 2357777652 111
Q ss_pred CCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 113 DLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
-..++||+|++-.. .+ +.+++.+++.|+|||.++..
T Consensus 135 ---~~~~~fDVIIvDs~----~~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 135 ---LDIKKYDLIICLQE----PD---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred ---ccCCcCCEEEEcCC----CC---hHHHHHHHHhcCCCcEEEEC
Confidence 12368999997642 21 36889999999999999885
No 428
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.19 E-value=2.3e-05 Score=69.93 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=85.1
Q ss_pred EEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 287 VLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 287 vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
|.||||--|.+..+|+++.- .+++++|+++..++.|++++. ++..++++..+|..+.--+.+..|.|+..++=-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 68999999999999999842 279999999999999999987 4557899999997653212233788887654221
Q ss_pred CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 364 DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
-..++|++....++....|+++ +......+++.|.+.||.+++-.
T Consensus 79 lI~~ILe~~~~~~~~~~~lILq----------------------P~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQ----------------------PNTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEE----------------------ESS-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhhHHHhccCCeEEEe----------------------CCCChHHHHHHHHHCCCEEEEeE
Confidence 3566777777778777788887 22346789999999999988643
No 429
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.17 E-value=1.8e-06 Score=76.23 Aligned_cols=108 Identities=24% Similarity=0.369 Sum_probs=67.1
Q ss_pred HHHhccCC-CC--CCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC----
Q 043471 44 PEVLSLLP-PY--EGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD---- 113 (485)
Q Consensus 44 ~~~~~~~~-~~--~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---- 113 (485)
.++.+... .. ++.++||+||++|.++..+.+++ ..|+|+|+.+. ...+++.++++|+.+..
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~ 80 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKD 80 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHH
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHh
Confidence 34555555 22 45899999999999999999987 79999999986 11145666666654321
Q ss_pred C--CCC--CCCeeEEEhhhhhhccCh---------HHHHHHHHHHHhhcccCcEEEEEec
Q 043471 114 L--TFS--EDSVDMMFSNWLLMYLSD---------KEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 114 ~--~~~--~~~~D~v~~~~~~~~~~~---------~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+ .+. ...||+|+|-.+.....+ .-....+.-+.+.|+|||.+++...
T Consensus 81 i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 81 IRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 1 011 268999999774322211 1133455556678999999888644
No 430
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.17 E-value=2.7e-06 Score=71.83 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=81.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
....+.+.|+|+|+|.++...++...+|++|+..|...+.|+++.. ...|++.+.+|+.+.+ | ...|+|+|-+.
T Consensus 30 ~va~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~--f--e~ADvvicEml 105 (252)
T COG4076 30 EVAEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD--F--ENADVVICEML 105 (252)
T ss_pred HHhhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc--c--cccceeHHHHh
Confidence 3445789999999999999999998899999999999999999843 3458999999998855 3 67899999653
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
=.-+-++....++..+.+.||-.+.++-..
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCccccHH
Confidence 222222225578888888999999887643
No 431
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.17 E-value=8.4e-06 Score=71.36 Aligned_cols=92 Identities=23% Similarity=0.238 Sum_probs=71.2
Q ss_pred cEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHH---HcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhh
Q 043471 57 TVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEE---VNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~ 131 (485)
+++|||+|.|.-++.|+=. ..+|+.+|.+..-+...+. ..+. +|++.+.+.+++ +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~---~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE---PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH---TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc---cccCCCccEEEeehh--
Confidence 8999999999999888754 5689999999877665554 3332 589999999987 224689999999754
Q ss_pred ccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 132 YLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.+ ...++.-+...+++||.+++.
T Consensus 125 --~~--l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 --AP--LDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SS--HHHHHHHHGGGEEEEEEEEEE
T ss_pred --cC--HHHHHHHHHHhcCCCCEEEEE
Confidence 33 567888899999999998884
No 432
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.16 E-value=1.2e-06 Score=74.35 Aligned_cols=71 Identities=24% Similarity=0.350 Sum_probs=51.4
Q ss_pred cEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCC-eeEEEhh
Q 043471 57 TVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDS-VDMMFSN 127 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~-~D~v~~~ 127 (485)
.|+|+.||.|..++.||+.+.+|++||+++..++.|+.++.- ..++.++++|+.+..-.+..+. +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999999999999999999999987543 3489999999987421122222 7999864
No 433
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=8.2e-06 Score=69.81 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=86.2
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
...++.++++-..-.|++|||+|+|+|-.+...+......|+..|+.|......+-+.+..+..+.+...|... ++.
T Consensus 65 ~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~ 141 (218)
T COG3897 65 QVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPP 141 (218)
T ss_pred HHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCc
Confidence 34455555555566789999999999999988887744589999999999888888877666778888888765 357
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcE-EEEEecc
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGT-VLISDYC 388 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~-l~i~~~~ 388 (485)
.||+|+...+++.-+-..+++. ..+.|+..|. +++-++.
T Consensus 142 ~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 142 AFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred ceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 7999999998876555666666 5555555554 4544443
No 434
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.14 E-value=3e-06 Score=78.30 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=77.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcC------CCCCeEEEEeeccCCCCCCCCC-Cee
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNG------HFENVKFMCADVTSPDLTFSED-SVD 122 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~-~~D 122 (485)
.+++.+||=||-|.|..+..+.+.. .+|+.+|+++..++.|++... ..++++++.+|.... +.-..+ +||
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~-l~~~~~~~yD 152 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF-LKETQEEKYD 152 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH-HHTSSST-EE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH-HHhccCCccc
Confidence 3468899999999999999998874 589999999999999998643 236899999998653 111234 899
Q ss_pred EEEhhhhhhccChHH--HHHHHHHHHhhcccCcEEEEEe
Q 043471 123 MMFSNWLLMYLSDKE--VEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+|+.-..-...+... -..+++.+++.|+|||.+++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999643211111110 2479999999999999999865
No 435
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=2.4e-05 Score=69.63 Aligned_cols=127 Identities=23% Similarity=0.209 Sum_probs=93.7
Q ss_pred CCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCCCCCCCC-ccEEEEccccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKKTYPENS-FDVIYSRDTIL 360 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~~~~~~~-fD~i~~~~~~~ 360 (485)
+.+++|||+|.|.-+..++-.. +.+++-+|....-+...++....++. |++++++.+++..- ... ||+|++..+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vtsRAva- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTSRAVA- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEeehcc-
Confidence 5799999999999888877333 67899999998888888777766663 59999999988752 223 9999998753
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
+...++.-+..++|+||.+++.-.... .--..+........|+.+..+...+
T Consensus 146 ---~L~~l~e~~~pllk~~g~~~~~k~~~~------------------~~e~~e~~~a~~~~~~~~~~~~~~~ 197 (215)
T COG0357 146 ---SLNVLLELCLPLLKVGGGFLAYKGLAG------------------KDELPEAEKAILPLGGQVEKVFSLT 197 (215)
T ss_pred ---chHHHHHHHHHhcccCCcchhhhHHhh------------------hhhHHHHHHHHHhhcCcEEEEEEee
Confidence 677888889999999998755411110 0113456677777888887765543
No 436
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=4e-06 Score=83.28 Aligned_cols=112 Identities=19% Similarity=0.288 Sum_probs=83.1
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC-CCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF-SEDS 120 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~-~~~~ 120 (485)
...++.+...++.+|||+=||.|.+++.||++..+|+|+|+++++++.|++.+.. ..|++|+.++++++.... ....
T Consensus 283 ~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~ 362 (432)
T COG2265 283 ETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYK 362 (432)
T ss_pred HHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCC
Confidence 3455666777888999999999999999999999999999999999999987543 347999999998853222 2357
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|+|+.. ...-+- -+.+++.+.+ ++|-.+++++..
T Consensus 363 ~d~VvvD--PPR~G~--~~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 363 PDVVVVD--PPRAGA--DREVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred CCEEEEC--CCCCCC--CHHHHHHHHh-cCCCcEEEEeCC
Confidence 8999875 122221 1245555554 567778888743
No 437
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.11 E-value=1.2e-05 Score=75.14 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=84.6
Q ss_pred HHHhccCC---CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCC
Q 043471 44 PEVLSLLP---PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSP 112 (485)
Q Consensus 44 ~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~ 112 (485)
.+++.+.+ .+...+||-||-|.|..++.+.+.. .+++.+|+.++.++.|++.+.. .++++.+..|..++
T Consensus 63 hEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~ 142 (282)
T COG0421 63 HEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF 142 (282)
T ss_pred HHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH
Confidence 34444443 2334699999999999999999985 5899999999999999998653 26889999998764
Q ss_pred CCCCCCCCeeEEEhhhhhhccCh-H--HHHHHHHHHHhhcccCcEEEEE
Q 043471 113 DLTFSEDSVDMMFSNWLLMYLSD-K--EVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~~~~-~--~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
--.. ..+||+|++-..=. ... + --..+++.+++.|+|+|+++..
T Consensus 143 v~~~-~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 143 LRDC-EEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHhC-CCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 2112 23899999765433 221 0 0247999999999999999886
No 438
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.11 E-value=2.6e-05 Score=67.34 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=89.6
Q ss_pred CcCccChhhhHHHhccCCC--CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC---CCCeEEEEe
Q 043471 34 KASDLDKEERPEVLSLLPP--YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH---FENVKFMCA 107 (485)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~ 107 (485)
...+-....++.+...+.. ..|.++||+=+|+|.+++..+.+|+ .|+.||.+...+...+++... ..+...+..
T Consensus 21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~ 100 (187)
T COG0742 21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN 100 (187)
T ss_pred CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence 3455566788889999876 6899999999999999999988865 899999999999998887542 357889999
Q ss_pred eccCCCCCCC--CCCeeEEEhhhhhhccChHHHHHHHHH--HHhhcccCcEEEEEe
Q 043471 108 DVTSPDLTFS--EDSVDMMFSNWLLMYLSDKEVEKLAER--MVKWLKVGGYIFFRE 159 (485)
Q Consensus 108 d~~~~~~~~~--~~~~D~v~~~~~~~~~~~~~~~~~l~~--~~~~L~pgG~l~~~~ 159 (485)
|+... ++-. .++||+|+.-= .++..--+....+.. -..+|+|+|.+++..
T Consensus 101 da~~~-L~~~~~~~~FDlVflDP-Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 101 DALRA-LKQLGTREPFDLVFLDP-PYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred cHHHH-HHhcCCCCcccEEEeCC-CCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 98742 1112 23599999852 233222111233333 457899999999853
No 439
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.10 E-value=2.4e-06 Score=74.16 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=82.0
Q ss_pred HHHhhhcCcCcch---hhhhcCCCcCccChhhhHHHhccC-CC-CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHH
Q 043471 14 KNYWMEHSANLTV---EAMMLDSKASDLDKEERPEVLSLL-PP-YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSV 88 (485)
Q Consensus 14 ~~yw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~ 88 (485)
++||.+.+.-+.. ...|..+.+++.+++.....+... .. .....|+|.-||.|..+.-++.+++.|++||++|.-
T Consensus 49 ~kywk~ryrlfsrfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPik 128 (263)
T KOG2730|consen 49 FKYWKNRYRLFSRFDSGIYMDREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVK 128 (263)
T ss_pred HHHHHHHHHHHHhhccceeecccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHH
Confidence 6788875543332 234555677777776555444322 11 145689999999999999999999999999999999
Q ss_pred HHHHHHHcCC---CCCeEEEEeeccCCC--CCCCCCCeeEEEhh
Q 043471 89 IKKNEEVNGH---FENVKFMCADVTSPD--LTFSEDSVDMMFSN 127 (485)
Q Consensus 89 ~~~a~~~~~~---~~~~~~~~~d~~~~~--~~~~~~~~D~v~~~ 127 (485)
+..|+.++.- .++|+|++||+.++- +.+....+|+|+.+
T Consensus 129 Ia~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 129 IACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred HHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 9999987643 248999999997631 33445557777765
No 440
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=3.1e-05 Score=68.38 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCC-C-C--CCCCCC
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSP-D-L--TFSEDS 120 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~-~-~--~~~~~~ 120 (485)
....+++.||||.=||+.++..|.. +..|+++|++++..+.+.+... -...|+++++.+.+- + + ..+.++
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 4566789999999999998888876 7799999999999998876543 334899999987642 0 0 134689
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
||.+|.- |.. .++..++.++.+++|+||.|++.
T Consensus 150 fDfaFvD----adK-~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 150 FDFAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred eeEEEEc----cch-HHHHHHHHHHHhhcccccEEEEe
Confidence 9999874 233 23568999999999999998884
No 441
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.07 E-value=1.7e-05 Score=73.31 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=77.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC-----CCCCeEEEEccCCCCC-CCCC-CccEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG-----LKCSVEFEVADCTKKT-YPEN-SFDVI 353 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~-----~~~~i~~~~~d~~~~~-~~~~-~fD~i 353 (485)
+...+||=||.|.|..+..+.+.. ..+++.+|+++.+++.|++.+.. ...+++++..|....- -..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 356799999999999999998764 35999999999999999987652 2358999999985531 1123 89999
Q ss_pred EEcccccccCC----HHHHHHHHHhcCCCCcEEEEEe
Q 043471 354 YSRDTILHIQD----KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 354 ~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+.-..-...+. ..++++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 98432211111 3688999999999999998875
No 442
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.06 E-value=3.6e-05 Score=67.95 Aligned_cols=103 Identities=22% Similarity=0.356 Sum_probs=73.7
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCCh----HHHHHHHHHcCCCCCeEEEEeeccCCC-CCCCCC
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFID----SVIKKNEEVNGHFENVKFMCADVTSPD-LTFSED 119 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~----~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 119 (485)
+.++.++|.+||-+|..+|...-+++.- ...|+|++.|+ +.+..|++| +|+-.+.+|+..+. -..--+
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~DAr~P~~Y~~lv~ 142 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILEDARHPEKYRMLVE 142 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-TTSGGGGTTTS-
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----CceeeeeccCCChHHhhcccc
Confidence 3456788999999999999999999886 34899999999 556677777 68999999998642 112245
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.+|+|++--+ + ++ ..+-++.++...||+||.+++.
T Consensus 143 ~VDvI~~DVa--Q-p~-Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 143 MVDVIFQDVA--Q-PD-QARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -EEEEEEE-S--S-TT-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccEEEecCC--C-hH-HHHHHHHHHHhhccCCcEEEEE
Confidence 8999998632 1 22 2567888888999999999985
No 443
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.06 E-value=2.7e-05 Score=73.01 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCC--
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPE-- 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~-- 347 (485)
..++.+++.+.+.++..|||||+|+|.++..|++. +.+++++|+++.+++..+++.. ...+++++.+|+.++..+.
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh-hcccceeeecchhccccHHhh
Confidence 67788999998889999999999999999999988 4799999999999999999875 4458999999999886543
Q ss_pred -CCccEEEEcccccccCCHHHHHHHHHhcCCC
Q 043471 348 -NSFDVIYSRDTILHIQDKPALFKSFFKWLKP 378 (485)
Q Consensus 348 -~~fD~i~~~~~~~~~~~~~~~l~~~~~~Lkp 378 (485)
.....|+++-.. ++ -..++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred cCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 345667776543 22 34566666653333
No 444
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=3.8e-05 Score=67.38 Aligned_cols=108 Identities=25% Similarity=0.296 Sum_probs=77.1
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCCC--EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC---
Q 043471 271 TTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDV--HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--- 344 (485)
Q Consensus 271 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--- 344 (485)
.+.++.++.. ++++..|+|+|+..|.++..++++.+. .|+|+|+.|-- .-.++.++++|+...+
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~~~V~~iq~d~~~~~~~~ 101 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PIPGVIFLQGDITDEDTLE 101 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cCCCceEEeeeccCccHHH
Confidence 3455555553 578899999999999999999998743 59999996542 1236899999998753
Q ss_pred -----CCCCCccEEEEcccc--------cccC---CHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 345 -----YPENSFDVIYSRDTI--------LHIQ---DKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 345 -----~~~~~fD~i~~~~~~--------~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+...++|+|+|-.+- .|.. --..++.-+..+|+|||.+++-.+-
T Consensus 102 ~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 102 KLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 344568999984322 2221 1334566777899999999988653
No 445
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=4.1e-05 Score=67.18 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=78.3
Q ss_pred hhhHHHhccCCC-CCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC-
Q 043471 41 EERPEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT- 115 (485)
Q Consensus 41 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~- 115 (485)
....++.+.... .++.+|+|+||-.|..+..+++. + ..|+|+|+-|- ...+++.++++|++..+..
T Consensus 31 ~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~~~V~~iq~d~~~~~~~~ 101 (205)
T COG0293 31 YKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPGVIFLQGDITDEDTLE 101 (205)
T ss_pred HHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccCCCceEEeeeccCccHHH
Confidence 344556666654 45789999999999999999987 3 34999999772 2235799999999875321
Q ss_pred -----CCCCCeeEEEhhhhh--------hccChHH-HHHHHHHHHhhcccCcEEEEEec
Q 043471 116 -----FSEDSVDMMFSNWLL--------MYLSDKE-VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 116 -----~~~~~~D~v~~~~~~--------~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+....+|+|+|-++. .|...-. ...++.-+..+|+|||.+++...
T Consensus 102 ~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 102 KLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 334558999986544 3332211 33556666779999999999755
No 446
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.03 E-value=6.1e-06 Score=80.56 Aligned_cols=67 Identities=30% Similarity=0.512 Sum_probs=51.1
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTS 111 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~ 111 (485)
..+++.++..++ +|||+-||+|.+++.||+...+|+|||+++++++.|++.+. ...|++|+.+++++
T Consensus 187 ~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 187 EQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 455666776655 89999999999999999999999999999999999988643 34689999987754
No 447
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.02 E-value=0.00018 Score=63.52 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=87.6
Q ss_pred HHHHHHHH---HcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC
Q 043471 270 ETTKEFVA---KLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT 344 (485)
Q Consensus 270 ~~~~~~~~---~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~ 344 (485)
.....++. .+.+++|.+||-+|.++|....+++.-. ...|++++.|+...+..-..... ..|+--+..|+....
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-R~NIiPIl~DAr~P~ 135 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-RPNIIPILEDARHPE 135 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-STTEEEEES-TTSGG
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-CCceeeeeccCCChH
Confidence 44444544 3568899999999999999998888865 35999999999554443322211 237777888886521
Q ss_pred ---CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHh
Q 043471 345 ---YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 345 ---~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (485)
.--+.+|+|++--+ +-....-++.++...||+||.+++.--...-......- .. -..-.+.|++
T Consensus 136 ~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~-~v----------f~~e~~~L~~ 202 (229)
T PF01269_consen 136 KYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPE-EV----------FAEEVKKLKE 202 (229)
T ss_dssp GGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH-HH----------HHHHHHHHHC
T ss_pred HhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH-HH----------HHHHHHHHHH
Confidence 11257999998532 22234445678889999999999883221111110000 00 1233467788
Q ss_pred CCCeEEEEeec
Q 043471 422 AGFVDIIAEDR 432 (485)
Q Consensus 422 aGf~~~~~~~~ 432 (485)
.||++++.-..
T Consensus 203 ~~~~~~e~i~L 213 (229)
T PF01269_consen 203 EGFKPLEQITL 213 (229)
T ss_dssp TTCEEEEEEE-
T ss_pred cCCChheEecc
Confidence 89999876543
No 448
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.00 E-value=6.3e-05 Score=66.41 Aligned_cols=110 Identities=16% Similarity=0.337 Sum_probs=83.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC----
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK---- 343 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~---- 343 (485)
...+++.+ ..+++||||.=||..+..+|..+ +.+|+++|+++...+.+.+..+ +...+|++++++..+.
T Consensus 65 l~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 65 LQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 34444444 35699999988888777777766 6799999999999999977554 6667899999887552
Q ss_pred --CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 344 --TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 344 --~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
..+.++||+++.-. .-.+....+.++.++||+||.+++-..
T Consensus 142 ~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DNv 184 (237)
T KOG1663|consen 142 LADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVDNV 184 (237)
T ss_pred HhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEecc
Confidence 13457899998732 113455788999999999999988753
No 449
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.99 E-value=4.9e-05 Score=64.86 Aligned_cols=145 Identities=21% Similarity=0.146 Sum_probs=93.4
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHH----------HHHHHHHHhcCCCCCeEEEEccCC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSIN----------MISFALERAIGLKCSVEFEVADCT 341 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~----------~~~~a~~~~~~~~~~i~~~~~d~~ 341 (485)
+++...+++++..|+|+=.|.|.+++.++...+ ..|++.-+.+. +-..+++.. ..|++.+-.+..
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~---~aN~e~~~~~~~ 115 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV---YANVEVIGKPLV 115 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh---hhhhhhhCCccc
Confidence 455666899999999999999999999988763 26666543322 222222221 124444444444
Q ss_pred CCCCCCCCccEEEEccccc-------ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHH
Q 043471 342 KKTYPENSFDVIYSRDTIL-------HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKS 414 (485)
Q Consensus 342 ~~~~~~~~fD~i~~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (485)
.+. +.+..|+++.....| |-....++.+.+++.|||||.+++.+.....+........ ....+...
T Consensus 116 A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~------~~ri~~a~ 188 (238)
T COG4798 116 ALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTIT------LHRIDPAV 188 (238)
T ss_pred ccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhh------hcccChHH
Confidence 444 334556655532222 2335778899999999999999999877655444332221 12456788
Q ss_pred HHHHHHhCCCeEEE
Q 043471 415 YGQMLKDAGFVDII 428 (485)
Q Consensus 415 ~~~~l~~aGf~~~~ 428 (485)
+.+..+++||+...
T Consensus 189 V~a~veaaGFkl~a 202 (238)
T COG4798 189 VIAEVEAAGFKLEA 202 (238)
T ss_pred HHHHHHhhcceeee
Confidence 99999999998654
No 450
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.99 E-value=4.9e-05 Score=78.82 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=55.5
Q ss_pred CCCEEEEECCCCChhHHHHhhcC---------CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC-----CC
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF---------DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY-----PE 347 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~-----~~ 347 (485)
...+|||.|||+|.++..++... ...++|+|+++..+..++.++...+ ..+.+.+.|.....+ ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 34699999999999998887644 1579999999999999998876443 234445444332111 12
Q ss_pred CCccEEEEccccc
Q 043471 348 NSFDVIYSRDTIL 360 (485)
Q Consensus 348 ~~fD~i~~~~~~~ 360 (485)
+.||+|+++....
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999986654
No 451
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=4.6e-05 Score=74.34 Aligned_cols=121 Identities=20% Similarity=0.234 Sum_probs=86.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHcCCCC--CeEEEEeeccCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVNGHFE--NVKFMCADVTSPDLTFS 117 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~ 117 (485)
......+.+.+|.+|||+.++.|.=+.++++. +..|+++|+++.-++..+++....+ ++.....|.....-..+
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc
Confidence 33445677889999999999999988888876 3458999999999998888765433 67788888765322222
Q ss_pred C-CCeeEEEh----h--hhhhc-------cChH-------HHHHHHHHHHhhcccCcEEEEEeccCCC
Q 043471 118 E-DSVDMMFS----N--WLLMY-------LSDK-------EVEKLAERMVKWLKVGGYIFFRESCFHQ 164 (485)
Q Consensus 118 ~-~~~D~v~~----~--~~~~~-------~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 164 (485)
. ++||.|+. + +++.- .... -..++|..+.++|||||.|+-++.+...
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 2 35999983 2 23311 1111 1347889999999999999998776543
No 452
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.0001 Score=65.65 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCC-CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCe-EEEEccCCCCC---
Q 043471 270 ETTKEFVAKLDLK-PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV-EFEVADCTKKT--- 344 (485)
Q Consensus 270 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i-~~~~~d~~~~~--- 344 (485)
..+...++.+.+. ++..+||||+.||.|+..+.++....|+|+|....++..--+. ..++ .+...|+..+.
T Consensus 65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d~rV~~~E~tN~r~l~~~~ 140 (245)
T COG1189 65 LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----DPRVIVLERTNVRYLTPED 140 (245)
T ss_pred HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----CCcEEEEecCChhhCCHHH
Confidence 4566677777665 5779999999999999999998445999999999888764332 1233 33444554432
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcC------CCCCCHHHHHHH
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRG------YDLHDVKSYGQM 418 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 418 (485)
+. +..|+|+|--+|. ....+|..+..+++|+|.++..- ++.... -+......| ....-...+.+.
T Consensus 141 ~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv--KPQFEa---gr~~v~kkGvv~d~~~~~~v~~~i~~~ 211 (245)
T COG1189 141 FT-EKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV--KPQFEA---GREQVGKKGVVRDPKLHAEVLSKIENF 211 (245)
T ss_pred cc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe--cchhhh---hhhhcCcCceecCcchHHHHHHHHHHH
Confidence 22 3678999977765 45788999999999999887662 111100 001111111 111234678888
Q ss_pred HHhCCCeEEEEe
Q 043471 419 LKDAGFVDIIAE 430 (485)
Q Consensus 419 l~~aGf~~~~~~ 430 (485)
+++.||.+..+.
T Consensus 212 ~~~~g~~~~gl~ 223 (245)
T COG1189 212 AKELGFQVKGLI 223 (245)
T ss_pred HhhcCcEEeeeE
Confidence 899999987764
No 453
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.94 E-value=1.9e-05 Score=76.33 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=78.4
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---------cCcEEEEeCChHHHHHHHHHc--CC--CCCeEE
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---------AGHVIALDFIDSVIKKNEEVN--GH--FENVKF 104 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---------~~~v~giD~s~~~~~~a~~~~--~~--~~~~~~ 104 (485)
-+....+.+.+.+...++.+|+|-+||+|.+...+.+. ..+++|+|+++.++..|+.+. .. ..+..+
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 44566667777777778889999999999998877662 458999999999999887653 21 123568
Q ss_pred EEeeccCCCCCCCCCCeeEEEhhhhhhcc--C----------------h-HHHHHHHHHHHhhcccCcEEEEEec
Q 043471 105 MCADVTSPDLTFSEDSVDMMFSNWLLMYL--S----------------D-KEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 105 ~~~d~~~~~~~~~~~~~D~v~~~~~~~~~--~----------------~-~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
..+|....+.......||+|+++=.+.-. . . ..--.++..+.+.|++||.+.+--+
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 88887553221124789999987332111 0 0 0112588999999999999766433
No 454
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.93 E-value=6.5e-05 Score=65.19 Aligned_cols=104 Identities=21% Similarity=0.226 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC--CCCCCCccEEEEcccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK--TYPENSFDVIYSRDTI 359 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~i~~~~~~ 359 (485)
..|.+||.||-|-|.....+.++-...-+.|+..|..++..+........+|....+--++. .++++.||.|+--.--
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 66889999999999988888877555778899999999998887655556777776654443 3568889999986554
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
++-.|...+.+.+.|+|||+|.+-+.
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 67778888999999999999988665
No 455
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.91 E-value=1.2e-05 Score=68.35 Aligned_cols=70 Identities=29% Similarity=0.463 Sum_probs=52.0
Q ss_pred EEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCC--CCCCC-ccEEEEc
Q 043471 286 KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKT--YPENS-FDVIYSR 356 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~--~~~~~-fD~i~~~ 356 (485)
.|+|+.||.|+.+..+|+. ..+|+++|+++..++.|+.++. +...+|+++++|..+.. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999998 4599999999999999999987 44568999999987642 12122 8999985
No 456
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.90 E-value=0.00017 Score=69.34 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=89.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-C--------------------------------C-------EE
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-D--------------------------------V-------HV 309 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--------------------------------~-------~v 309 (485)
..+..++...+..++..++|.=||+|.+++..|... + + .+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 355677777788888899999999999998776643 1 1 37
Q ss_pred EEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccccc-ccCC-------HHHHHHHHHhcCCCC
Q 043471 310 VGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL-HIQD-------KPALFKSFFKWLKPG 379 (485)
Q Consensus 310 ~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~-~~~~-------~~~~l~~~~~~Lkpg 379 (485)
+|+|+++.+++.|+.|+. +....|+|.++|+..++-+.+.+|+|+|+...- -+.+ ...+.+.+++.++--
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 799999999999999875 666789999999999864447899999986542 1222 234456677777888
Q ss_pred cEEEEEe
Q 043471 380 GTVLISD 386 (485)
Q Consensus 380 G~l~i~~ 386 (485)
+.++|+.
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 8888873
No 457
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.90 E-value=8.6e-05 Score=72.88 Aligned_cols=104 Identities=18% Similarity=0.272 Sum_probs=86.6
Q ss_pred CEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC-
Q 043471 285 QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ- 363 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~- 363 (485)
.++|.+|||.-.++..+.+..--.++-+|+|+..++....+.........+...|+..+.|++++||+|+.-+.+.++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 3999999999999888887744589999999999998877654444568899999999999999999999999998872
Q ss_pred C---------HHHHHHHHHhcCCCCcEEEEEecc
Q 043471 364 D---------KPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 364 ~---------~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+ ....+.++.|+|+|||+++.....
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 1 234578999999999998777653
No 458
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.89 E-value=4.8e-05 Score=74.31 Aligned_cols=71 Identities=30% Similarity=0.370 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTK 342 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~ 342 (485)
.++..+++.+...++ +|||+-||.|.++..+++.. .+|+|+|+++.+++.|++++...+ .+++|..++..+
T Consensus 184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 455666777776666 89999999999999999884 599999999999999999987433 479998877644
No 459
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.89 E-value=7.2e-05 Score=70.69 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=66.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
+.+|+++||+||++|+++..+.++ |.+|++||.++ |-. .+.. ..+|.....|......+.+++|.++|-.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~----~L~~-~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQ----SLMD-TGQVEHLRADGFKFRPPRKNVDWLVCDMV-- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCH----hhhC-CCCEEEEeccCcccCCCCCCCCEEEEecc--
Confidence 468999999999999999999998 78999999654 211 1221 34788888887665323678999999654
Q ss_pred ccCCHHHHHHHHHhcCCCC
Q 043471 361 HIQDKPALFKSFFKWLKPG 379 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~Lkpg 379 (485)
..+..+.+-+.+.|..|
T Consensus 280 --e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 --EKPARVAELMAQWLVNG 296 (357)
T ss_pred --cCHHHHHHHHHHHHhcC
Confidence 35778888888888776
No 460
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.89 E-value=2.7e-05 Score=76.13 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCcchHHHHhh--c-CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAKK--A-GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~--~-~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
+.+|||+.||+|..++.++.. | .+|+++|+++++++.++++... ..++.++++|+... +......||+|..-=
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~-l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV-LRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH-HHHhCCCCCEEEeCC-
Confidence 468999999999999999887 4 4899999999999999886532 23688999998764 111235799998752
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
...+ ..++..+.+.+++||.++++.
T Consensus 123 -fGs~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 -FGTP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CCCc----HHHHHHHHHhcccCCEEEEEe
Confidence 2222 268999999999999999973
No 461
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.89 E-value=0.00015 Score=64.65 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=80.4
Q ss_pred EEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc
Q 043471 58 VLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY 132 (485)
Q Consensus 58 vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~ 132 (485)
|.||||-.|++..+|.++|. .|+++|+++.-++.|++.... ..+++...+|-... ++ +.+..|.|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~-~~e~~d~ivIAGM--- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LK-PGEDVDTIVIAGM--- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG----GGG---EEEEEEE---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cC-CCCCCCEEEEecC---
Confidence 68999999999999999975 899999999999999987543 35799999996542 21 2234898887664
Q ss_pred cChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 133 LSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 133 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
+-....+.+.+....++....+++.... ....+++++.+.||...
T Consensus 76 -GG~lI~~ILe~~~~~~~~~~~lILqP~~-----------------~~~~LR~~L~~~gf~I~ 120 (205)
T PF04816_consen 76 -GGELIIEILEAGPEKLSSAKRLILQPNT-----------------HAYELRRWLYENGFEII 120 (205)
T ss_dssp --HHHHHHHHHHTGGGGTT--EEEEEESS------------------HHHHHHHHHHTTEEEE
T ss_pred -CHHHHHHHHHhhHHHhccCCeEEEeCCC-----------------ChHHHHHHHHHCCCEEE
Confidence 3333567888877777776678885442 56789999999998543
No 462
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.87 E-value=4.9e-05 Score=69.59 Aligned_cols=142 Identities=16% Similarity=0.293 Sum_probs=85.4
Q ss_pred hccCCCCCC-CcEEEEcCCCCc--chHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCCC--eEEEEeeccCCCCCCC-
Q 043471 47 LSLLPPYEG-KTVLEFGAGIGR--FTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFEN--VKFMCADVTSPDLTFS- 117 (485)
Q Consensus 47 ~~~~~~~~~-~~vLDiGcG~G~--~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~~--~~~~~~d~~~~~~~~~- 117 (485)
.+.+....| ..+||||||-=. ..-..+++ .+.|+=+|..|-.+..++..+...++ ..++++|+.++.-.+.
T Consensus 60 Vr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~ 139 (267)
T PF04672_consen 60 VRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAH 139 (267)
T ss_dssp HHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCS
T ss_pred HHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcC
Confidence 344444434 479999999654 45666665 67899999999999999998776666 8999999987421111
Q ss_pred ---CCCee-----EEEhhhhhhccCh-HHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc--------ccCCCCCCCCCh
Q 043471 118 ---EDSVD-----MMFSNWLLMYLSD-KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS--------KRKHNPTHYREP 180 (485)
Q Consensus 118 ---~~~~D-----~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--------~~~~~~~~~~~~ 180 (485)
.+-+| .|+...++||+++ +....++..+...|.||.+|+|+..+....... .....+.+.++.
T Consensus 140 p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 140 PEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp HHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-H
T ss_pred HHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCH
Confidence 12333 4667778999976 458899999999999999999998875432111 123556666777
Q ss_pred hHHHHHhh
Q 043471 181 RFYSKVFK 188 (485)
Q Consensus 181 ~~~~~~~~ 188 (485)
+.+..+|.
T Consensus 220 ~ei~~~f~ 227 (267)
T PF04672_consen 220 EEIAAFFD 227 (267)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcC
Confidence 77777777
No 463
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.87 E-value=5.8e-05 Score=71.32 Aligned_cols=87 Identities=23% Similarity=0.294 Sum_probs=65.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY 132 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~ 132 (485)
.+|.++|||||++|..+-.|+++|..|+|||..+ |. ..+...++|..+..|..... .+.+.+|.|+|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~~~V~h~~~d~fr~~--p~~~~vDwvVcDmv--- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDTGQVEHLRADGFKFR--PPRKNVDWLVCDMV--- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCCCCEEEEeccCcccC--CCCCCCCEEEEecc---
Confidence 5789999999999999999999999999999655 22 22233378999999886642 22678999999754
Q ss_pred cChHHHHHHHHHHHhhcccC
Q 043471 133 LSDKEVEKLAERMVKWLKVG 152 (485)
Q Consensus 133 ~~~~~~~~~l~~~~~~L~pg 152 (485)
.. ..++++-+.++|..|
T Consensus 280 -e~--P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 -EK--PARVAELMAQWLVNG 296 (357)
T ss_pred -cC--HHHHHHHHHHHHhcC
Confidence 22 336667777777665
No 464
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.87 E-value=9.2e-05 Score=72.40 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=79.4
Q ss_pred CCEEEEECCCCChhHHHHhhcC-C-CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC-CCCCccEEEEcccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF-D-VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY-PENSFDVIYSRDTI 359 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~-~-~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~-~~~~fD~i~~~~~~ 359 (485)
+.+|||+.||+|..+..++.+. | ..|+++|+++.+++.+++++...+ .++++.+.|+..... ....||+|..-. +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 4589999999999999999874 3 489999999999999999986443 257888888866421 135799998855 3
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
..+..++..+.+.+++||.++++
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEE
Confidence 35568999999999999999998
No 465
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.81 E-value=5.9e-05 Score=69.91 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCCCcch-HHHHhh---cCcEEEEeCChHHHHHHHHHcC-C---CCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 54 EGKTVLEFGAGIGRFT-GELAKK---AGHVIALDFIDSVIKKNEEVNG-H---FENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~-~~l~~~---~~~v~giD~s~~~~~~a~~~~~-~---~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
.+.+|+=||||.=-++ +.|+++ +..|+++|+++++++.+++... . ..+++|+.+|+.+ .+..-..||+|+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~--~~~dl~~~DvV~ 197 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLD--VTYDLKEYDVVF 197 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGG--G-GG----SEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhc--cccccccCCEEE
Confidence 4569999999987765 566654 4679999999999999988654 1 2479999999976 333346899998
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
...... +..++..+++.++.+.++||..++...
T Consensus 198 lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 198 LAALVG-MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp E-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred Ehhhcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 764322 222336799999999999999999873
No 466
>PRK13699 putative methylase; Provisional
Probab=97.79 E-value=0.00058 Score=62.29 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=48.1
Q ss_pred CchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc
Q 043471 267 GGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI 327 (485)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~ 327 (485)
...+..+.++... ..+|+.|||.=||+|..+....+. +.+++|+|+++...+.|.+++.
T Consensus 148 kP~~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 148 KPVTSLQPLIESF-THPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CcHHHHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHH
Confidence 3346677777665 457889999999999888766654 8899999999999999998875
No 467
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.78 E-value=0.0002 Score=66.44 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=67.1
Q ss_pred CCEEEEECCCCChhHH-HHhhcC--CCEEEEEeCCHHHHHHHHHHhc---CCCCCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 284 GQKVLDVGCGIGGGDF-YMADKF--DVHVVGIDLSINMISFALERAI---GLKCSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~-~l~~~~--~~~v~g~D~s~~~~~~a~~~~~---~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
..+|+=||||.=.++. .+++.+ +..++++|+++.+++.+++... +++.+++|..+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4599999999866554 455443 5689999999999999998765 566789999999987654446899999866
Q ss_pred cccc-cCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 358 TILH-IQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 358 ~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...- -.++.++|..+.+.++||..+++-.
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 5432 2489999999999999999988873
No 468
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=4.5e-05 Score=63.02 Aligned_cols=152 Identities=15% Similarity=0.185 Sum_probs=96.5
Q ss_pred HHHHHcCCCCCCEEEEECCCCChh-HHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC----CCCeEEEEccCCC--CCC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGG-DFYMADKF-DVHVVGIDLSINMISFALERAIGL----KCSVEFEVADCTK--KTY 345 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~-~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~----~~~i~~~~~d~~~--~~~ 345 (485)
.+++.-..-.|.+|||+|.|--.+ +..+|... ...|..+|-++..++-.++..... ...+.++.-+... ...
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~ 99 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ 99 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH
Confidence 344444444578999999995444 44444443 468999999999988777654321 0112122111111 112
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFV 425 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 425 (485)
...+||.|+|...+..-.-.+.+++.|++.|+|.|..++..+- +-.+.+.+.+.....||.
T Consensus 100 eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR-------------------Rg~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR-------------------RGQSLQKFLDEVGTVGFT 160 (201)
T ss_pred hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCc-------------------ccchHHHHHHHHHhceeE
Confidence 3468999999998865556788899999999999997776322 123566777888889998
Q ss_pred EEEEeecchHHHHHHHHHHHHHH
Q 043471 426 DIIAEDRTEQFVQVLQRELDAIE 448 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
+...+. |-..+.....++.
T Consensus 161 v~l~en----yde~iwqrh~~Lk 179 (201)
T KOG3201|consen 161 VCLEEN----YDEAIWQRHGRLK 179 (201)
T ss_pred EEeccc----HhHHHHHHHHHHh
Confidence 765544 4444544444443
No 469
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.77 E-value=0.00011 Score=63.16 Aligned_cols=106 Identities=20% Similarity=0.225 Sum_probs=76.3
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 121 (485)
+.++..-..-+|++|||+|+|+|..++.-++.|+ .|++.|+.|...+..+-+.+..+ .+.+...|+.. .+..|
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-----~~~~~ 143 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-----SPPAF 143 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-----CCcce
Confidence 3445555566899999999999999999999876 79999999877766655443222 56777766543 46789
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
|+|+.+.+++.-+. ..+.+. +.+.|+..|..++
T Consensus 144 Dl~LagDlfy~~~~--a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 144 DLLLAGDLFYNHTE--ADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred eEEEeeceecCchH--HHHHHH-HHHHHHhCCCEEE
Confidence 99999987665444 446666 6666666666554
No 470
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.77 E-value=0.00011 Score=69.44 Aligned_cols=112 Identities=29% Similarity=0.378 Sum_probs=84.8
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCCCcc
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPENSFD 351 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~~fD 351 (485)
..+...++.+|||++++.|+=+..+++..+ ..+++.|+++.-+...++++..++ .++.....|..... .....||
T Consensus 79 ~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 79 LALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEE
T ss_pred ccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccc
Confidence 445678899999999999999999988763 699999999999999988887655 35666667766541 2234699
Q ss_pred EEEEc------ccccccCC----------------HHHHHHHHHhcC----CCCcEEEEEecc
Q 043471 352 VIYSR------DTILHIQD----------------KPALFKSFFKWL----KPGGTVLISDYC 388 (485)
Q Consensus 352 ~i~~~------~~~~~~~~----------------~~~~l~~~~~~L----kpgG~l~i~~~~ 388 (485)
.|+.- +++..-++ ..++|+.+.+.+ ||||+++.++..
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 99982 22222222 456789999999 999999988654
No 471
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.76 E-value=9.3e-05 Score=76.74 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=52.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhhc----------CcEEEEeCChHHHHHHHHHcCCCC--CeEEEEeeccCCCC---CCCC
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKA----------GHVIALDFIDSVIKKNEEVNGHFE--NVKFMCADVTSPDL---TFSE 118 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~----------~~v~giD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~---~~~~ 118 (485)
.+.+|||.|||+|.+...+++.. .+++|+|+++.++..++.++...+ .++....|...... .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 35689999999999998887642 368999999999999988754433 34555555332111 0113
Q ss_pred CCeeEEEhh
Q 043471 119 DSVDMMFSN 127 (485)
Q Consensus 119 ~~~D~v~~~ 127 (485)
+.||+|++|
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 589999987
No 472
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=3.6e-05 Score=75.65 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=75.3
Q ss_pred HhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCC---C
Q 043471 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSED---S 120 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~---~ 120 (485)
+-+.+....+..+||+-||||.+++.+++....|+||+++++++.-|+..+. ...|.+|+++-+++.--..... +
T Consensus 375 i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~ 454 (534)
T KOG2187|consen 375 IGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDS 454 (534)
T ss_pred HHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCC
Confidence 3356677788899999999999999999999999999999999999998653 3459999999666531111111 2
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
=++|....- ...+- -..+++.+.+.-+|--.++++.
T Consensus 455 ~~~v~iiDP-pR~Gl--h~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 455 ETLVAIIDP-PRKGL--HMKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred CceEEEECC-Ccccc--cHHHHHHHHhccCccceEEEEc
Confidence 232322221 11111 2356666666666776777753
No 473
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=9.3e-05 Score=65.92 Aligned_cols=94 Identities=28% Similarity=0.284 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCcchHHHHh--hcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCC-eeEEEhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAK--KAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDS-VDMMFSNWL 129 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~--~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~-~D~v~~~~~ 129 (485)
+.+++|||+|.|.-++.||= ...+|+-+|...+-+...+..... .+|++++++.++++.. ... ||+|+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~---~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ---EKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc---ccccCcEEEeehc
Confidence 57999999999999988773 355799999988776655554332 2589999999998541 123 999999754
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
.. ...+..-+..++++||.++.
T Consensus 145 ----a~--L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ----AS--LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ----cc--hHHHHHHHHHhcccCCcchh
Confidence 22 45677778899999998654
No 474
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.67 E-value=0.0001 Score=62.51 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=76.3
Q ss_pred CEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcc--ccc
Q 043471 285 QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRD--TIL 360 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~--~~~ 360 (485)
+.+.|+|+|+|.++...++. .-+|++++.+|.-.+.|.+++. +. .+++++.+|+.+..| +..|+|+|-. +.-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHHh
Confidence 57999999999998877766 5599999999999999999964 32 489999999999887 5689999842 221
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
-......++..+...||-++.++=+
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccccH
Confidence 2234556788888889999987644
No 475
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.67 E-value=0.00021 Score=60.15 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=67.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhh-----cCCCEEEEEeCCHHHHHHHHHHhcCCC----CCeEEEEccCCCCCCCCCCcc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMAD-----KFDVHVVGIDLSINMISFALERAIGLK----CSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~g~D~s~~~~~~a~~~~~~~~----~~i~~~~~d~~~~~~~~~~fD 351 (485)
..+..+|+|+|||.|.++..++. ..+.+|+|+|.++..++.++++...+. .++.+..++..+.+ .....+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 35677999999999999999998 667899999999999999988776333 35555555554432 145677
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
+++..++---+ -..+++...+ |+-.+++.
T Consensus 102 ~~vgLHaCG~L--s~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVGLHACGDL--SDRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEEeecccch--HHHHHHHHHH---cCCCEEEE
Confidence 77775443322 2344555444 65555544
No 476
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.66 E-value=0.00036 Score=67.07 Aligned_cols=124 Identities=16% Similarity=0.085 Sum_probs=89.7
Q ss_pred CcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC------------------------------------
Q 043471 34 KASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG------------------------------------ 77 (485)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------------------------------ 77 (485)
...++.+.....++...+-.++..++|-=||+|.+.+..|-.+.
T Consensus 171 g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~ 250 (381)
T COG0116 171 GPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARR 250 (381)
T ss_pred CCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhh
Confidence 33445555666777777777778999999999999988876653
Q ss_pred -----cEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhh-ccChH-----HHHHHHH
Q 043471 78 -----HVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM-YLSDK-----EVEKLAE 143 (485)
Q Consensus 78 -----~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~-~~~~~-----~~~~~l~ 143 (485)
.++|+|+++.+++.|+.+.. ..+.|+|.++|+..+.-++ ..+|+|+||=... -+.+. -+..+.+
T Consensus 251 ~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~ 328 (381)
T COG0116 251 GKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYREFGR 328 (381)
T ss_pred cCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHH
Confidence 27799999999999998643 3347999999999854333 7899999984321 12222 2445666
Q ss_pred HHHhhcccCcEEEEEe
Q 043471 144 RMVKWLKVGGYIFFRE 159 (485)
Q Consensus 144 ~~~~~L~pgG~l~~~~ 159 (485)
.+++.++--+..+++.
T Consensus 329 ~lk~~~~~ws~~v~tt 344 (381)
T COG0116 329 TLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHhcCCceEEEEc
Confidence 7778888777777753
No 477
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.0041 Score=53.89 Aligned_cols=148 Identities=21% Similarity=0.209 Sum_probs=95.4
Q ss_pred HHHHHHHHH---cCCCCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-
Q 043471 270 ETTKEFVAK---LDLKPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT- 344 (485)
Q Consensus 270 ~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~- 344 (485)
..+..++.. +++++|.+||=+|+.+|....+++.-.+ ..+++++.|+.+....-..+.. ..|+--+..|+....
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-R~Ni~PIL~DA~~P~~ 138 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-RPNIIPILEDARKPEK 138 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-CCCceeeecccCCcHH
Confidence 344555544 4688999999999999999999988764 5899999999877665544433 236666777875521
Q ss_pred --CCCCCccEEEEcccccccCCHHH-HHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHh
Q 043471 345 --YPENSFDVIYSRDTILHIQDKPA-LFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 345 --~~~~~fD~i~~~~~~~~~~~~~~-~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (485)
.--+..|+|+.-= ..++..+ +..++...||+||.+++.--...-......- .. -.+-.+.|++
T Consensus 139 Y~~~Ve~VDviy~DV---AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~-~v----------f~~ev~kL~~ 204 (231)
T COG1889 139 YRHLVEKVDVIYQDV---AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPE-EV----------FKDEVEKLEE 204 (231)
T ss_pred hhhhcccccEEEEec---CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHH-HH----------HHHHHHHHHh
Confidence 1125588887732 1244444 4678899999999888874332221111110 00 1123456778
Q ss_pred CCCeEEEEeec
Q 043471 422 AGFVDIIAEDR 432 (485)
Q Consensus 422 aGf~~~~~~~~ 432 (485)
.||++++.-+.
T Consensus 205 ~~f~i~e~~~L 215 (231)
T COG1889 205 GGFEILEVVDL 215 (231)
T ss_pred cCceeeEEecc
Confidence 89999877554
No 478
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.63 E-value=0.00015 Score=61.06 Aligned_cols=89 Identities=20% Similarity=0.350 Sum_probs=61.0
Q ss_pred CCCCCcEEEEcCCCCcchHHHHh-----h-cCcEEEEeCChHHHHHHHHHcCCC-----CCeEEEEeeccCCCCCCCCCC
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAK-----K-AGHVIALDFIDSVIKKNEEVNGHF-----ENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~-----~-~~~v~giD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 120 (485)
..+..+|+|+|||.|+++..|+. . +.+|+|||.++..++.++++.... .+.++..+++.... ....
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 99 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES---SSDP 99 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc---ccCC
Confidence 35677999999999999999998 4 679999999999998888764321 35677776665421 1456
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHh
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVK 147 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~ 147 (485)
.++++...+-.-+++ .+++...+
T Consensus 100 ~~~~vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 100 PDILVGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred CeEEEEeecccchHH----HHHHHHHH
Confidence 677776433223333 45555554
No 479
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.61 E-value=1.5e-05 Score=63.57 Aligned_cols=97 Identities=23% Similarity=0.264 Sum_probs=43.9
Q ss_pred EEEcCCCCcchHHHHhh---c--CcEEEEeCChH---HHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 59 LEFGAGIGRFTGELAKK---A--GHVIALDFIDS---VIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 59 LDiGcG~G~~~~~l~~~---~--~~v~giD~s~~---~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
||||+..|..+..+++. . .+++++|..+. .-+..++ .....+++++.++..+.--.++.+++|+|+.-+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-- 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--
Confidence 69999999999888764 2 37999999994 3333333 222247999999986531123357999999765
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
.|.. +.....++.+.+.|+|||.+++.+
T Consensus 78 ~H~~-~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 DHSY-EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---H-HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCCH-HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2322 225678999999999999999875
No 480
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=3.5e-05 Score=63.15 Aligned_cols=55 Identities=22% Similarity=0.482 Sum_probs=44.0
Q ss_pred EEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 334 EFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 334 ~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.+++-.....+|.+++.|+|++.++++|+. .-..++++++|.|||||++-++.+.
T Consensus 32 dlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 32 DLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred chhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 333333344578899999999999999994 5667899999999999999998543
No 481
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00032 Score=61.02 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=85.3
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCC-CCCeEEEEeeccCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGH-FENVKFMCADVTSPDLT 115 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~ 115 (485)
|.........+.+. .+|.+||.||.|-|...-.+.++. ..=+-|+..|+.++..+.---. ..||-...+-+++.--.
T Consensus 86 WEtpiMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 86 WETPIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT 164 (271)
T ss_pred hhhHHHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc
Confidence 33344444444444 678899999999999888887763 4567799999999888875322 24888888888775334
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
.+++.||=|+---.-.+-.+ ...+.+.+.|+|||+|.+-.
T Consensus 165 L~d~~FDGI~yDTy~e~yEd--l~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSELYED--LRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred ccccCcceeEeechhhHHHH--HHHHHHHHhhhcCCCceEEE
Confidence 67899999885433344444 66888999999999998765
No 482
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.60 E-value=0.00029 Score=66.45 Aligned_cols=90 Identities=22% Similarity=0.268 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC----
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT---- 344 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~---- 344 (485)
-++.++++.+...++..++|.-||.|+.+..+++.+ +.+|+|+|.++.+++.+++++.....++.++++++.++.
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 456788899988899999999999999999999876 479999999999999999998776678999999887652
Q ss_pred -CCCCCccEEEEcccc
Q 043471 345 -YPENSFDVIYSRDTI 359 (485)
Q Consensus 345 -~~~~~fD~i~~~~~~ 359 (485)
....++|.|+....+
T Consensus 87 ~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 87 ELLVTKIDGILVDLGV 102 (305)
T ss_pred hcCCCcccEEEEeccC
Confidence 233579999886544
No 483
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.00055 Score=63.10 Aligned_cols=148 Identities=15% Similarity=0.108 Sum_probs=92.9
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHh--cCCC-------------------------------
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLK------------------------------- 330 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~------------------------------- 330 (485)
..+||--|||.|+++..|+.. |.++.|=+.|--|+=...=.+ ....
T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 458999999999999999977 778888888877753321111 0000
Q ss_pred --------CCeEEEEccCCCC---CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHH
Q 043471 331 --------CSVEFEVADCTKK---TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFS 399 (485)
Q Consensus 331 --------~~i~~~~~d~~~~---~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 399 (485)
.....-.+|+.+. +-..+.||+|+.++.+-...+.-+.+..|..+|||||..+=..+...........
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~- 308 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV- 308 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC-
Confidence 0111112333322 1112469999998777666789999999999999999987553322111110000
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHH
Q 043471 400 EYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQF 436 (485)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~ 436 (485)
.+...--.+.+++..+++.-||+++..+.....|
T Consensus 309 ---~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y 342 (369)
T KOG2798|consen 309 ---ENEMSIELSLEDLKRVASHRGFEVEKERGIDTTY 342 (369)
T ss_pred ---cccccccccHHHHHHHHHhcCcEEEEeeeeeccc
Confidence 0001123578999999999999998776544444
No 484
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.56 E-value=0.00094 Score=62.81 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=76.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhc--C------CCCCeEEEEccCCCCC-CCCCCcc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAI--G------LKCSVEFEVADCTKKT-YPENSFD 351 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~--~------~~~~i~~~~~d~~~~~-~~~~~fD 351 (485)
+.-.+||-+|.|.|-.++.+.+.-+ .+++-+|.+|.|++.++.+.. . ...+++++..|+.+.- -..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 3446899999999999999987653 499999999999999984432 1 2357888888886642 2245899
Q ss_pred EEEEcc------cccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 352 VIYSRD------TILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 352 ~i~~~~------~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+|+.-. ++--+ --.++..-+.|.|+++|.++++-
T Consensus 368 ~vIVDl~DP~tps~~rl-YS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 368 VVIVDLPDPSTPSIGRL-YSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEEeCCCCCCcchhhh-hhHHHHHHHHHhcCcCceEEEec
Confidence 998732 11110 13467788899999999999983
No 485
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00049 Score=62.22 Aligned_cols=107 Identities=24% Similarity=0.319 Sum_probs=82.3
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDL 114 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~ 114 (485)
.....++..+...+|.+|||-|.|+|.++.++++.- .+++..|+-+...+.|.+.... .+++++..-|+...-.
T Consensus 92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 345678899999999999999999999999999983 5899999988888888875543 2489999999988444
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcE
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGY 154 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 154 (485)
...+..+|.|+.-..-.| .++-.++++||.+|.
T Consensus 172 ~~ks~~aDaVFLDlPaPw-------~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLPAPW-------EAIPHAAKILKDEGG 204 (314)
T ss_pred cccccccceEEEcCCChh-------hhhhhhHHHhhhcCc
Confidence 444678999987643222 344456667887774
No 486
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00036 Score=62.20 Aligned_cols=107 Identities=20% Similarity=0.274 Sum_probs=75.4
Q ss_pred HHHhccCCC-CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCCC-eEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFEN-VKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~~-~~~~~~d~~~~~~~~~~~~ 120 (485)
...++.+.. .++.++||||+.||.++..+.++|+ +|+|+|..-..+..--+.. ++ +.+...|+..+...--.+.
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d---~rV~~~E~tN~r~l~~~~~~~~ 144 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND---PRVIVLERTNVRYLTPEDFTEK 144 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC---CcEEEEecCChhhCCHHHcccC
Confidence 456666664 4688999999999999999999976 8999999987765433321 33 4555556655321111236
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.|+++|--+ +++ ...++..+..+++|+|.++..
T Consensus 145 ~d~~v~DvS--FIS---L~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 145 PDLIVIDVS--FIS---LKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred CCeEEEEee--hhh---HHHHHHHHHHhcCCCceEEEE
Confidence 788887643 333 457889999999999988774
No 487
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.47 E-value=0.00027 Score=59.67 Aligned_cols=55 Identities=29% Similarity=0.343 Sum_probs=45.9
Q ss_pred cEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccC
Q 043471 57 TVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTS 111 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~ 111 (485)
.+||||||.|..+..+++.+. +|+++|+++.+.+.+++.... .++++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999998865 699999999999988886532 2468888888765
No 488
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.47 E-value=2.3e-05 Score=62.50 Aligned_cols=96 Identities=20% Similarity=0.341 Sum_probs=43.4
Q ss_pred EEECCCCChhHHHHhhcC--C--CEEEEEeCCHH---HHHHHHHHhcCCCCCeEEEEccCCCC--CCCCCCccEEEEccc
Q 043471 288 LDVGCGIGGGDFYMADKF--D--VHVVGIDLSIN---MISFALERAIGLKCSVEFEVADCTKK--TYPENSFDVIYSRDT 358 (485)
Q Consensus 288 LDiGcG~G~~~~~l~~~~--~--~~v~g~D~s~~---~~~~a~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~i~~~~~ 358 (485)
||||+..|..+..+++.. + .+++++|..+. .-+..++ .++..+++++.++..+. .++.+++|+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 699999999998888754 2 37999999984 3333332 23445799999988653 223578999998652
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
|..+.....++.+.+.|+|||.+++.+
T Consensus 79 -H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 -HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 222345667888999999999999875
No 489
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.44 E-value=0.001 Score=57.07 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=91.5
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cC--cEEEEeCChH----------HHHHHHHHcCCCCCeEEEEeeccC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AG--HVIALDFIDS----------VIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~--~v~giD~s~~----------~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
++|...+.++|.+|+|+=.|.|+++..|+.. |. .|++.=..+. +-..+++. ...|+..+-.....
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~--~~aN~e~~~~~~~A 116 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP--VYANVEVIGKPLVA 116 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh--hhhhhhhhCCcccc
Confidence 6777788899999999999999999999876 32 6766643332 11122211 11244444444444
Q ss_pred CCCCCCCCCeeEEEhhhhhh-----ccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHH
Q 043471 112 PDLTFSEDSVDMMFSNWLLM-----YLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKV 186 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~-----~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (485)
+. +.+..|+++.+...| .+......++..++++.|||||.+.+.+.....++... .....++.+.....+.
T Consensus 117 --~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~-dt~~~~ri~~a~V~a~ 192 (238)
T COG4798 117 --LG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS-DTITLHRIDPAVVIAE 192 (238)
T ss_pred --cC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh-hhhhhcccChHHHHHH
Confidence 22 446677776543322 12233467899999999999999999776555443333 2333444567778888
Q ss_pred hhhcceec
Q 043471 187 FKECQIQD 194 (485)
Q Consensus 187 ~~~~~~~~ 194 (485)
.+.+||..
T Consensus 193 veaaGFkl 200 (238)
T COG4798 193 VEAAGFKL 200 (238)
T ss_pred HHhhccee
Confidence 88889854
No 490
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.0012 Score=57.01 Aligned_cols=102 Identities=25% Similarity=0.427 Sum_probs=76.0
Q ss_pred cCCCCCCCcEEEEcCCCCcchHHHHhh-c-CcEEEEeCChHHHH----HHHHHcCCCCCeEEEEeeccCCC-CCCCCCCe
Q 043471 49 LLPPYEGKTVLEFGAGIGRFTGELAKK-A-GHVIALDFIDSVIK----KNEEVNGHFENVKFMCADVTSPD-LTFSEDSV 121 (485)
Q Consensus 49 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~~~----~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~ 121 (485)
.++..+|.+||=+|+-+|...-+++.- + ..|+|+++|+...+ .|++| +|+-.+.+|+..+. -.+--+.+
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecccCCcHHhhhhcccc
Confidence 346788999999999999999999886 3 57999999986654 55554 68999999998652 11224679
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|+|+.--+ .+...+-+..++..-|++||++++.
T Consensus 147 Dviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 147 DVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cEEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 99986421 1222456677788999999987774
No 491
>PRK10742 putative methyltransferase; Provisional
Probab=97.41 E-value=0.00073 Score=61.32 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=69.6
Q ss_pred HHHHHHcCCCCCC--EEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC------C----CCeEEEEccC
Q 043471 273 KEFVAKLDLKPGQ--KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL------K----CSVEFEVADC 340 (485)
Q Consensus 273 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~----~~i~~~~~d~ 340 (485)
+.+++.++++++. +|||.-+|+|..+..++.+ |++|+++|-++.+....+..+... . .+++++.+|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 4677888888887 9999999999999999988 889999999999988887776532 1 3677888887
Q ss_pred CCCC-CCCCCccEEEEccccccc
Q 043471 341 TKKT-YPENSFDVIYSRDTILHI 362 (485)
Q Consensus 341 ~~~~-~~~~~fD~i~~~~~~~~~ 362 (485)
.+.- -...+||+|+.-..+.|-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 5531 112479999998777663
No 492
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.41 E-value=0.00019 Score=62.61 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=58.9
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC----CCCCCCccEEEEcc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK----TYPENSFDVIYSRD 357 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~----~~~~~~fD~i~~~~ 357 (485)
...|+|.-||.|+.+..++.+ +..|++||++|.-+..|+.++. |...+|+|+++|..++ .+....+|+|+.+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 458999999999999999988 7899999999999999999987 6668999999998765 22223355665544
No 493
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.40 E-value=0.00013 Score=68.95 Aligned_cols=117 Identities=24% Similarity=0.267 Sum_probs=84.2
Q ss_pred hccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCCCe
Q 043471 47 LSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
...+.+.++.+|||+++|.|.=+..+++. ...|++.|+++..+...+.+.... .++.....|............|
T Consensus 78 ~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 78 ALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp HHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTE
T ss_pred cccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccccccc
Confidence 34467788999999999999999888886 358999999999998887764433 3677777787763211233469
Q ss_pred eEEEh----hh--hhhccChH--------------HHHHHHHHHHhhc----ccCcEEEEEeccCC
Q 043471 122 DMMFS----NW--LLMYLSDK--------------EVEKLAERMVKWL----KVGGYIFFRESCFH 163 (485)
Q Consensus 122 D~v~~----~~--~~~~~~~~--------------~~~~~l~~~~~~L----~pgG~l~~~~~~~~ 163 (485)
|.|+. ++ ++..-++. ...+.|+.+.+.+ ||||+++-++.+..
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 99984 32 23222221 1237889999999 99999999877654
No 494
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.39 E-value=0.0034 Score=55.36 Aligned_cols=123 Identities=13% Similarity=0.077 Sum_probs=89.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
+.+.++.||||--|.+..++.+.. ...+++.|+++..++.|.+++. ++..+++...+|....--++..+|+|+..++
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 445569999999999999999875 3489999999999999999887 4456788888888543233457999888654
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
=- .-...+|++-...|+.=-+++++ +-....++++.|.+.+|.++.
T Consensus 95 GG--~lI~~ILee~~~~l~~~~rlILQ----------------------Pn~~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 95 GG--TLIREILEEGKEKLKGVERLILQ----------------------PNIHTYELREWLSANSYEIKA 140 (226)
T ss_pred cH--HHHHHHHHHhhhhhcCcceEEEC----------------------CCCCHHHHHHHHHhCCceeee
Confidence 22 23556777777777655566665 112345677777777777654
No 495
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.36 E-value=0.0088 Score=58.40 Aligned_cols=147 Identities=15% Similarity=0.246 Sum_probs=82.3
Q ss_pred CCEEEEECCCCChhHHHHhhcC----------------CCEEEEEeCCHHHHHHHHHHhcC--------------CCCCe
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF----------------DVHVVGIDLSINMISFALERAIG--------------LKCSV 333 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~g~D~s~~~~~~a~~~~~~--------------~~~~i 333 (485)
..+|+|+|||+|..+..+.... ..+|..-|...+-....=..+.. .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 5689999999998776553311 14566666543222221111110 00011
Q ss_pred EEE---EccCCCCCCCCCCccEEEEcccccccCC--------------------------------------HHHHHHHH
Q 043471 334 EFE---VADCTKKTYPENSFDVIYSRDTILHIQD--------------------------------------KPALFKSF 372 (485)
Q Consensus 334 ~~~---~~d~~~~~~~~~~fD~i~~~~~~~~~~~--------------------------------------~~~~l~~~ 372 (485)
-|+ -+.+..--||.++.+++++..++||+.. ...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 2344444588999999999999999842 11223333
Q ss_pred HhcCCCCcEEEEEecccCCCCCC------hh----HH----HHHHhc------------CCCCCCHHHHHHHHHhCC-Ce
Q 043471 373 FKWLKPGGTVLISDYCKSFGTPS------VE----FS----EYIKQR------------GYDLHDVKSYGQMLKDAG-FV 425 (485)
Q Consensus 373 ~~~LkpgG~l~i~~~~~~~~~~~------~~----~~----~~~~~~------------~~~~~~~~~~~~~l~~aG-f~ 425 (485)
.+-|+|||+++++..+.....+. .. +. +....+ ....++.+++++..++.| |+
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 45689999999997665421110 00 11 111110 124578999999999866 55
Q ss_pred EEEEe
Q 043471 426 DIIAE 430 (485)
Q Consensus 426 ~~~~~ 430 (485)
+..++
T Consensus 304 I~~le 308 (386)
T PLN02668 304 IDKLE 308 (386)
T ss_pred eeeeE
Confidence 54444
No 496
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.36 E-value=0.00072 Score=61.10 Aligned_cols=92 Identities=18% Similarity=0.314 Sum_probs=66.4
Q ss_pred HHHHHHHHc--CCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCC
Q 043471 271 TTKEFVAKL--DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 271 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 347 (485)
.++.+.+.+ .+++..+|+|||||.-.++....... +..++|+|++..+++..+..+.-++.+.++...|+...+ +.
T Consensus 91 ~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~ 169 (251)
T PF07091_consen 91 NLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PK 169 (251)
T ss_dssp GHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TT
T ss_pred hHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CC
Confidence 344444444 24456799999999999888777654 679999999999999999887777778888888988775 35
Q ss_pred CCccEEEEcccccccC
Q 043471 348 NSFDVIYSRDTILHIQ 363 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~ 363 (485)
.+.|+.+..=+++.+.
T Consensus 170 ~~~DlaLllK~lp~le 185 (251)
T PF07091_consen 170 EPADLALLLKTLPCLE 185 (251)
T ss_dssp SEESEEEEET-HHHHH
T ss_pred CCcchhhHHHHHHHHH
Confidence 7899999988877663
No 497
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.0018 Score=55.21 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=66.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEc-cCCCC--------CCCCCC
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVA-DCTKK--------TYPENS 349 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~-d~~~~--------~~~~~~ 349 (485)
++|+.+|||+||..|.++.-..++. +..|.|||+-.-. . ...++++.+ |+.+. .+|+.+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---------p-~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---------P-PEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---------C-CCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 6789999999999999999888876 4589999983321 1 113444444 55442 246778
Q ss_pred ccEEEEccccc----ccCCHHHHHHH-------HHhcCCCCcEEEEEecccCC
Q 043471 350 FDVIYSRDTIL----HIQDKPALFKS-------FFKWLKPGGTVLISDYCKSF 391 (485)
Q Consensus 350 fD~i~~~~~~~----~~~~~~~~l~~-------~~~~LkpgG~l~i~~~~~~~ 391 (485)
.|+|++-..-. -+.|....+.- ....++|+|.+++-.|...+
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 99999853221 11244443333 34567899999998766543
No 498
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.30 E-value=0.0016 Score=61.02 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=46.3
Q ss_pred CCEEEEECCCCChhH-HHHhhcCCCEEEEEeCCHHHHHHHHHHhc---CCCCCeEEEEccCCC-----CCCCCCCccEEE
Q 043471 284 GQKVLDVGCGIGGGD-FYMADKFDVHVVGIDLSINMISFALERAI---GLKCSVEFEVADCTK-----KTYPENSFDVIY 354 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~-~~l~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~~~i~~~~~d~~~-----~~~~~~~fD~i~ 354 (485)
..++||||||...+- ..-++.++++++|+|+++..++.|++++. .+..+|+++...-.. +..+.+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 468999999988653 33344458999999999999999999986 345678887653222 112346899999
Q ss_pred Eccccccc
Q 043471 355 SRDTILHI 362 (485)
Q Consensus 355 ~~~~~~~~ 362 (485)
|+..|+.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 99988754
No 499
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.27 E-value=0.0037 Score=59.71 Aligned_cols=101 Identities=23% Similarity=0.306 Sum_probs=73.5
Q ss_pred HHHcCCCCCCEEEEECCC-CChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCC--CCCccE
Q 043471 276 VAKLDLKPGQKVLDVGCG-IGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP--ENSFDV 352 (485)
Q Consensus 276 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~ 352 (485)
++....+||.+|+=+|+| .|..+..+++..+++|+++|.|++-.+.|++.-.. .++... .....+ .+.||+
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-----~~i~~~-~~~~~~~~~~~~d~ 232 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-----HVINSS-DSDALEAVKEIADA 232 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-----EEEEcC-CchhhHHhHhhCcE
Confidence 455678999999999986 45678888987899999999999999999876331 223322 111111 134999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
|+..-. ...+....+.||+||++++.-...
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 988643 455788889999999999986553
No 500
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00045 Score=68.17 Aligned_cols=109 Identities=19% Similarity=0.183 Sum_probs=74.6
Q ss_pred HHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC---CCC--CC
Q 043471 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT---YPE--NS 349 (485)
Q Consensus 276 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~---~~~--~~ 349 (485)
-+.++++++..+||+.||||.++..+++.. .+|+|+++++..++.|+.++...+ .|.+|+++-.+++- +.. .+
T Consensus 376 ~e~~~l~~~k~llDv~CGTG~iglala~~~-~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~ 454 (534)
T KOG2187|consen 376 GEWAGLPADKTLLDVCCGTGTIGLALARGV-KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDS 454 (534)
T ss_pred HHHhCCCCCcEEEEEeecCCceehhhhccc-cceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCC
Confidence 345578888999999999999999999885 599999999999999999987544 58999999555531 100 12
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
=++|.....-. ..=...+++.+.+.-+|--.++++.
T Consensus 455 ~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 455 ETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred CceEEEECCCc-ccccHHHHHHHHhccCccceEEEEc
Confidence 23232221110 0113456677766666777777764
Done!