Your job contains 1 sequence.
>043474
MDHTLQNTHVKLLAFDLLSLTPTPDPATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTV
DDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIASYRG
DVQITVSDVVIEKDPNMEVLHWLDCLRLARKRYDVVVNKS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043474
(160 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2007352 - symbol:STN1 species:3702 "Arabidopsi... 442 1.1e-41 1
UNIPROTKB|D2GXY4 - symbol:OBFC1 "CST complex subunit STN1... 148 7.6e-10 1
UNIPROTKB|Q08DB2 - symbol:OBFC1 "CST complex subunit STN1... 141 4.5e-09 1
UNIPROTKB|F1PJS4 - symbol:OBFC1 "Uncharacterized protein"... 136 1.6e-08 1
UNIPROTKB|J9PA40 - symbol:OBFC1 "Uncharacterized protein"... 135 2.0e-08 1
MGI|MGI:1915581 - symbol:Obfc1 "oligonucleotide/oligosacc... 135 2.1e-08 1
UNIPROTKB|Q9H668 - symbol:OBFC1 "CST complex subunit STN1... 132 4.3e-08 1
UNIPROTKB|Q4R804 - symbol:OBFC1 "CST complex subunit STN1... 132 4.3e-08 1
UNIPROTKB|F1S835 - symbol:OBFC1 "Uncharacterized protein"... 130 7.2e-08 1
RGD|1305637 - symbol:Obfc1 "oligonucleotide/oligosacchari... 125 3.0e-07 1
UNIPROTKB|Q6DJ48 - symbol:obfc1 "CST complex subunit STN1... 106 0.00046 1
>TAIR|locus:2007352 [details] [associations]
symbol:STN1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0000784 "nuclear chromosome, telomeric
region" evidence=IDA] [GO:0016233 "telomere capping" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR004365 Pfam:PF01336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000784 GO:GO:0016233
EMBL:AC067971 EMBL:AK118772 EMBL:BT005022 EMBL:AY086427
IPI:IPI00534836 PIR:B86206 RefSeq:NP_563781.1 UniGene:At.27320
UniGene:At.74093 ProteinModelPortal:Q9LMK5
EnsemblPlants:AT1G07130.1 GeneID:837223 KEGG:ath:AT1G07130
TAIR:At1g07130 eggNOG:NOG256114 HOGENOM:HOG000090648
InParanoid:Q9LMK5 OMA:LHLVHVK PhylomeDB:Q9LMK5
ProtClustDB:CLSN2687714 Genevestigator:Q9LMK5 Uniprot:Q9LMK5
Length = 160
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 90/157 (57%), Positives = 113/157 (71%)
Query: 1 MDHTLQNTHVKLLAFDLLSLTPTPDPA-TFSR-SGKLLSRAEIVGTITSRDHKPSKFIKF 58
MD +LQ+TH KL+A D+ LT +P + +FS G +SR EIVGTI SRD P KF+KF
Sbjct: 1 MDRSLQSTHAKLVARDIQRLTQSPTESNSFSLLGGACVSRVEIVGTIVSRDLTP-KFLKF 59
Query: 59 TVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIASY 118
VDDGTGCV CV+WLN LTS Y R DP+T+ L+A A AA+I+IG VARVRGR+ SY
Sbjct: 60 GVDDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSY 119
Query: 119 RGDVQITVSDVVIEKDPNMEVLHWLDCLRLARKRYDV 155
RG +QIT + V E+DPN E+LHWL+CL+L + Y V
Sbjct: 120 RGVMQITANVAVAERDPNAEILHWLECLKLGQSCYRV 156
>UNIPROTKB|D2GXY4 [details] [associations]
symbol:OBFC1 "CST complex subunit STN1" species:9646
"Ailuropoda melanoleuca" [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0010833
"telomere maintenance via telomere lengthening" evidence=ISS]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISS]
InterPro:IPR004365 InterPro:IPR014647 Pfam:PF01336
PIRSF:PIRSF036950 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000784 GO:GO:0043047 GO:GO:0010833
EMBL:GL192371 HOGENOM:HOG000088638 InterPro:IPR015253 Pfam:PF09170
Uniprot:D2GXY4
Length = 367
Score = 148 (57.2 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 47/153 (30%), Positives = 74/153 (48%)
Query: 11 KLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPC 69
KL D+L L + P F +G + + EI+GT+ R K + F + VDDGTG + C
Sbjct: 27 KLYIGDILDLKESRQVPGVFFYNGHPIKQVEILGTVIGRREKDA-FYSYGVDDGTGVINC 85
Query: 70 VLWL---NHLTSLYLPRRDPS--TVRLIAGVAT-DFAAKIKIGLVARVRGRIASYRGDVQ 123
+ W N S P T +L T + KI+IG + ++RG + +YR + +
Sbjct: 86 ICWKKSNNAAPSSAAPALGVLNLTSQLKKLQETIEQKTKIEIGDIVQIRGYVHTYREERE 145
Query: 124 ITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
I V+ DP N+++ L+ + RK YD
Sbjct: 146 IRVTTYYKVDDPVCNIQIARMLELPSIYRKVYD 178
>UNIPROTKB|Q08DB2 [details] [associations]
symbol:OBFC1 "CST complex subunit STN1" species:9913 "Bos
taurus" [GO:0043047 "single-stranded telomeric DNA binding"
evidence=ISS] [GO:0000723 "telomere maintenance" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0010833 "telomere
maintenance via telomere lengthening" evidence=ISS] [GO:0000784
"nuclear chromosome, telomeric region" evidence=ISS] [GO:0070188
"Stn1-Ten1 complex" evidence=IEA] [GO:0045740 "positive regulation
of DNA replication" evidence=IEA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR004365 InterPro:IPR014647 Pfam:PF01336
PIRSF:PIRSF036950 GO:GO:0045111 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0045740 GO:GO:0000784
GO:GO:0070188 GO:GO:0043047 GO:GO:0010833 HOGENOM:HOG000088638
InterPro:IPR015253 Pfam:PF09170 EMBL:BC123847 IPI:IPI00685442
RefSeq:NP_001070317.1 UniGene:Bt.28149 ProteinModelPortal:Q08DB2
SMR:Q08DB2 STRING:Q08DB2 Ensembl:ENSBTAT00000019995 GeneID:514213
KEGG:bta:514213 CTD:79991 eggNOG:NOG256914
GeneTree:ENSGT00390000000909 HOVERGEN:HBG053364 InParanoid:Q08DB2
OMA:QTFYQQE OrthoDB:EOG4H19W3 NextBio:20871230 Uniprot:Q08DB2
Length = 370
Score = 141 (54.7 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 46/155 (29%), Positives = 74/155 (47%)
Query: 11 KLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPC 69
KL D+L L + F +G + + +I+GT+ K + F + VDD TG + C
Sbjct: 28 KLYIRDILDLKESGQVQGVFFYNGHPIKQVDILGTVIGVREKDA-FYSYGVDDSTGVINC 86
Query: 70 VLW--LNHLTS---LYLPR-RDPSTVRLIAGVATDFA--AKIKIGLVARVRGRIASYRGD 121
+ W LN+ S P R+ S + + A AK++IG + RVRG I +RG+
Sbjct: 87 ICWKRLNNTKSSSATATPSARELSLTSQLKKLQETIAQRAKLEIGDIIRVRGHIRMFRGE 146
Query: 122 VQITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
+I + DP N+++ L+ + RK YD
Sbjct: 147 REIHATTYYKVDDPVCNVQIARMLELPAIYRKVYD 181
>UNIPROTKB|F1PJS4 [details] [associations]
symbol:OBFC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043047 "single-stranded telomeric DNA
binding" evidence=IEA] [GO:0010833 "telomere maintenance via
telomere lengthening" evidence=IEA] InterPro:IPR004365
InterPro:IPR014647 Pfam:PF01336 PIRSF:PIRSF036950 GO:GO:0003676
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR015253 Pfam:PF09170 GeneTree:ENSGT00390000000909
OMA:QTFYQQE EMBL:AAEX03015503 Ensembl:ENSCAFT00000016654
Uniprot:F1PJS4
Length = 374
Score = 136 (52.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 44/158 (27%), Positives = 78/158 (49%)
Query: 11 KLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPC 69
KL D+L+L + F +G + + EI+GT+ R K + F + VDD TG + C
Sbjct: 28 KLYIRDILNLKESRQVQGVFFYNGHPIKQVEILGTVIGRREKDA-FYSYGVDDSTGVINC 86
Query: 70 VLWL--NHL-TSLYLPRRDPSTVRLIAGVAT--------DFAAKIKIGLVARVRGRIASY 118
+ W N++ +S L ST +++ + + KI+IG + ++RG + +Y
Sbjct: 87 ICWKKSNNIESSSALVTTAASTAGVLSLTSQLKKLQETIEQKTKIEIGDIIQIRGYVHTY 146
Query: 119 RGDVQITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
R + +I V+ DP N+++ L+ + RK YD
Sbjct: 147 REEREIRVTTFYKVDDPVCNIQIARMLELPSIYRKVYD 184
>UNIPROTKB|J9PA40 [details] [associations]
symbol:OBFC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043047 "single-stranded telomeric DNA
binding" evidence=IEA] [GO:0010833 "telomere maintenance via
telomere lengthening" evidence=IEA] InterPro:IPR004365
InterPro:IPR014647 Pfam:PF01336 PIRSF:PIRSF036950 GO:GO:0003676
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR015253 Pfam:PF09170 GeneTree:ENSGT00390000000909
EMBL:AAEX03015503 Ensembl:ENSCAFT00000046042 Uniprot:J9PA40
Length = 368
Score = 135 (52.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 42/156 (26%), Positives = 76/156 (48%)
Query: 11 KLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPC 69
KL D+L+L + F +G + + EI+GT+ R K + F + VDD TG + C
Sbjct: 28 KLYIRDILNLKESRQVQGVFFYNGHPIKQVEILGTVIGRREKDA-FYSYGVDDSTGVINC 86
Query: 70 VLWL--NHL--TSLYLPRRDPSTVRLIAGV-----ATDFAAKIKIGLVARVRGRIASYRG 120
+ W N++ +S+ + L + + + KI+IG + ++RG + +YR
Sbjct: 87 ICWKKSNNIESSSVTTAASTAGVLSLTSQLKKLQETIEQKTKIEIGDIIQIRGYVHTYRE 146
Query: 121 DVQITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
+ +I V+ DP N+++ L+ + RK YD
Sbjct: 147 EREIRVTTFYKVDDPVCNIQIARMLELPSIYRKVYD 182
>MGI|MGI:1915581 [details] [associations]
symbol:Obfc1 "oligonucleotide/oligosaccharide-binding fold
containing 1" species:10090 "Mus musculus" [GO:0000723 "telomere
maintenance" evidence=ISO] [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0000784 "nuclear chromosome, telomeric
region" evidence=ISO;IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0010833 "telomere
maintenance via telomere lengthening" evidence=ISO] [GO:0043047
"single-stranded telomeric DNA binding" evidence=ISO] [GO:0045740
"positive regulation of DNA replication" evidence=IDA] [GO:0070188
"Stn1-Ten1 complex" evidence=IDA] InterPro:IPR004365
InterPro:IPR014647 Pfam:PF01336 PIRSF:PIRSF036950 MGI:MGI:1915581
EMBL:CH466534 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0045111
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0045740
GO:GO:0070188 GO:GO:0043047 GO:GO:0010833 HOGENOM:HOG000088638
InterPro:IPR015253 Pfam:PF09170 CTD:79991 eggNOG:NOG256914
GeneTree:ENSGT00390000000909 HOVERGEN:HBG053364 OMA:QTFYQQE
OrthoDB:EOG4H19W3 EMBL:AK075574 EMBL:AK146929 EMBL:AK164386
EMBL:BC029548 IPI:IPI00226289 RefSeq:NP_780569.1 UniGene:Mm.218048
PDB:1WJ5 PDBsum:1WJ5 ProteinModelPortal:Q8K2X3 SMR:Q8K2X3
IntAct:Q8K2X3 STRING:Q8K2X3 PhosphoSite:Q8K2X3 PaxDb:Q8K2X3
PRIDE:Q8K2X3 Ensembl:ENSMUST00000049369 GeneID:108689
KEGG:mmu:108689 UCSC:uc008hvb.1 InParanoid:Q3TPH0
EvolutionaryTrace:Q8K2X3 NextBio:361231 Bgee:Q8K2X3
Genevestigator:Q8K2X3 GermOnline:ENSMUSG00000042694 Uniprot:Q8K2X3
Length = 378
Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 43/156 (27%), Positives = 74/156 (47%)
Query: 11 KLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPC 69
KL D+L + + P T+ +G + R +I+G + S + + F + VDD TG + C
Sbjct: 35 KLYIKDILEMKESQQVPGTYFYNGHPIRRVDIMGAVISVKERET-FYSYGVDDATGVINC 93
Query: 70 VLW--LNHLTSLYLPR-----RDPSTVRLIAGVATDFAAKIKIGL--VARVRGRIASYRG 120
V W L++ S P R+ S + + K +IG+ + RVRG + +R
Sbjct: 94 VCWKKLSNAESSSDPAILSTARELSMTSQLKKLQETIEQKTRIGIGDIIRVRGSVRMFRE 153
Query: 121 DVQITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
+ +I + DP NM++ L+ +L +K YD
Sbjct: 154 EREICANIYYKVDDPVWNMQIARMLELPKLYQKVYD 189
>UNIPROTKB|Q9H668 [details] [associations]
symbol:OBFC1 "CST complex subunit STN1" species:9606 "Homo
sapiens" [GO:0070188 "Stn1-Ten1 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=ISS;IDA] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=IDA] [GO:0000723 "telomere maintenance"
evidence=IMP] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0010833
"telomere maintenance via telomere lengthening" evidence=IMP]
[GO:0045740 "positive regulation of DNA replication" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR004365
InterPro:IPR014647 Pfam:PF01336 PIRSF:PIRSF036950 GO:GO:0005730
EMBL:CH471066 GO:GO:0045111 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0045740 GO:GO:0000784 GO:GO:0070188
GO:GO:0043047 GO:GO:0010833 EMBL:AL133355 HOGENOM:HOG000088638
InterPro:IPR015253 Pfam:PF09170 CTD:79991 eggNOG:NOG256914
HOVERGEN:HBG053364 OMA:QTFYQQE OrthoDB:EOG4H19W3 EMBL:AK026212
EMBL:BC017400 IPI:IPI00554443 RefSeq:NP_079204.2 UniGene:Hs.62314
ProteinModelPortal:Q9H668 SMR:Q9H668 DIP:DIP-59914N IntAct:Q9H668
MINT:MINT-1482105 STRING:Q9H668 PhosphoSite:Q9H668 DMDM:62900737
PRIDE:Q9H668 DNASU:79991 Ensembl:ENST00000224950
Ensembl:ENST00000369764 GeneID:79991 KEGG:hsa:79991 UCSC:uc001kxl.3
GeneCards:GC10M105632 HGNC:HGNC:26200 HPA:HPA037924 HPA:HPA037925
MIM:613128 neXtProt:NX_Q9H668 PharmGKB:PA134987118
InParanoid:Q9H668 PhylomeDB:Q9H668 GenomeRNAi:79991 NextBio:70050
Bgee:Q9H668 CleanEx:HS_OBFC1 Genevestigator:Q9H668
GermOnline:ENSG00000107960 Uniprot:Q9H668
Length = 368
Score = 132 (51.5 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 42/153 (27%), Positives = 72/153 (47%)
Query: 11 KLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPC 69
KL D+L + + P F +G + + +++GT+ + + F + VDD TG + C
Sbjct: 28 KLYIRDILDMKESRQVPGVFLYNGHPIKQVDVLGTVIGVRERDA-FYSYGVDDSTGVINC 86
Query: 70 VLW--LNHLTSLYLPR--RDPSTVRLIAGV--ATDFAAKIKIGLVARVRGRIASYRGDVQ 123
+ W LN + P R+ S + + + KI+IG RVRG I +YR + +
Sbjct: 87 ICWKKLNTESVSAAPSAARELSLTSQLKKLQETIEQKTKIEIGDTIRVRGSIRTYREERE 146
Query: 124 ITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
I + DP N+++ L+ + RK YD
Sbjct: 147 IHATTYYKVDDPVWNIQIARMLELPTIYRKVYD 179
>UNIPROTKB|Q4R804 [details] [associations]
symbol:OBFC1 "CST complex subunit STN1" species:9541
"Macaca fascicularis" [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0010833
"telomere maintenance via telomere lengthening" evidence=ISS]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISS]
InterPro:IPR004365 InterPro:IPR014647 Pfam:PF01336
PIRSF:PIRSF036950 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000784 GO:GO:0043047 GO:GO:0010833
InterPro:IPR015253 Pfam:PF09170 HOVERGEN:HBG053364
OrthoDB:EOG4H19W3 EMBL:AB168657 ProteinModelPortal:Q4R804
SMR:Q4R804 Uniprot:Q4R804
Length = 368
Score = 132 (51.5 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 42/153 (27%), Positives = 72/153 (47%)
Query: 11 KLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPC 69
KL D+L + + P F +G + + +++GT+ + + F + VDD TG + C
Sbjct: 28 KLYIRDILDMKESRQVPGVFLYNGHPIKQVDVLGTVVGVRERDA-FYSYGVDDSTGVINC 86
Query: 70 VLW--LNHLTSLYLPR--RDPSTVRLIAGV--ATDFAAKIKIGLVARVRGRIASYRGDVQ 123
+ W LN + P R+ S + + + KI+IG RVRG I +YR + +
Sbjct: 87 ICWKKLNTESVSAAPSAARELSLTSQLKKLQETIERRTKIEIGDTIRVRGSIRTYREERE 146
Query: 124 ITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
I + DP N+++ L+ + RK YD
Sbjct: 147 IHATAYYKVDDPVWNIQIARMLELPTIYRKIYD 179
>UNIPROTKB|F1S835 [details] [associations]
symbol:OBFC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070188 "Stn1-Ten1 complex" evidence=IEA] [GO:0045740
"positive regulation of DNA replication" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA] [GO:0010833
"telomere maintenance via telomere lengthening" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR004365
InterPro:IPR014647 Pfam:PF01336 PIRSF:PIRSF036950 GO:GO:0045111
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0045740
GO:GO:0070188 GO:GO:0043047 GO:GO:0010833 InterPro:IPR015253
Pfam:PF09170 GeneTree:ENSGT00390000000909 OMA:QTFYQQE EMBL:CT737145
EMBL:CU407078 Ensembl:ENSSSCT00000011601 Uniprot:F1S835
Length = 371
Score = 130 (50.8 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 44/155 (28%), Positives = 74/155 (47%)
Query: 11 KLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPC 69
KL D+L L + P F +G + + +I+GT+ + + F + VDD TG + C
Sbjct: 28 KLYIRDILDLKESRQVPGVFFYNGHPIKQVDILGTVIGVRERDA-FYSYGVDDSTGVINC 86
Query: 70 VLW--LNHLTSLYLPR----RDPSTVRLIAGVATDFAA--KIKIGLVARVRGRIASYRGD 121
+ W LN+ S R+ S + + A KI+IG + ++RG I +YR +
Sbjct: 87 ICWKKLNNTDSSSATAATNARELSLTSQLKKLQETIAQRLKIEIGDLVQIRGHIRTYREE 146
Query: 122 VQI--TVSDVVIEKDPNMEVLHWLDCLRLARKRYD 154
+I TV V + N+++ L+ + RK YD
Sbjct: 147 REIHATVYHKVDDPVCNIQIARMLELPTIYRKVYD 181
>RGD|1305637 [details] [associations]
symbol:Obfc1 "oligonucleotide/oligosaccharide-binding fold
containing 1" species:10116 "Rattus norvegicus" [GO:0000723
"telomere maintenance" evidence=ISO;ISS] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=ISO;ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0010833 "telomere maintenance via telomere
lengthening" evidence=ISO;ISS] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=ISO;ISS] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IEA;ISO] [GO:0045740 "positive
regulation of DNA replication" evidence=ISO;ISS] [GO:0070188
"Stn1-Ten1 complex" evidence=IEA;ISO] InterPro:IPR004365
InterPro:IPR014647 Pfam:PF01336 PIRSF:PIRSF036950 RGD:1305637
GO:GO:0045111 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0045740 GO:GO:0000784 GO:GO:0070188 GO:GO:0043047
GO:GO:0010833 InterPro:IPR015253 Pfam:PF09170 CTD:79991
eggNOG:NOG256914 GeneTree:ENSGT00390000000909 HOVERGEN:HBG053364
OrthoDB:EOG4H19W3 EMBL:BC079096 IPI:IPI00464676
RefSeq:NP_001011943.1 UniGene:Rn.15899 ProteinModelPortal:Q6AYD2
SMR:Q6AYD2 STRING:Q6AYD2 PRIDE:Q6AYD2 Ensembl:ENSRNOT00000027614
GeneID:294025 KEGG:rno:294025 UCSC:RGD:1305637 NextBio:637438
ArrayExpress:Q6AYD2 Genevestigator:Q6AYD2
GermOnline:ENSRNOG00000020376 Uniprot:Q6AYD2
Length = 408
Score = 125 (49.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 42/156 (26%), Positives = 71/156 (45%)
Query: 11 KLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPC 69
KL D+L + + P + +G + R +I+G + S + + F + VDD TG + C
Sbjct: 35 KLYIKDILEMKESQQVPGMYFYNGHPIRRVDIMGAVISVKERET-FYSYGVDDATGVINC 93
Query: 70 VLWL---NHLTS----LYLPRRDPSTVRLIAGVATDFAAKIKIGL--VARVRGRIASYRG 120
V W N +S + R+ S + + K KIG+ + RVRG + +R
Sbjct: 94 VCWKRPSNAESSSDPAILSTSRELSMTSQLKKLQETIEQKTKIGIGDIIRVRGYVRMFRE 153
Query: 121 DVQITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
+ +I + DP NM++ L+ L +K YD
Sbjct: 154 EREICATIYYKVDDPVWNMQIARMLELPELYKKVYD 189
>UNIPROTKB|Q6DJ48 [details] [associations]
symbol:obfc1 "CST complex subunit STN1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0010833
"telomere maintenance via telomere lengthening" evidence=ISS]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISS]
InterPro:IPR004365 InterPro:IPR014647 Pfam:PF01336
PIRSF:PIRSF036950 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000784 GO:GO:0043047 GO:GO:0010833
InterPro:IPR015253 Pfam:PF09170 CTD:79991 eggNOG:NOG256914
HOVERGEN:HBG053364 OrthoDB:EOG4H19W3 EMBL:BC075336
RefSeq:NP_001004908.1 UniGene:Str.78165 ProteinModelPortal:Q6DJ48
GeneID:448268 KEGG:xtr:448268 Xenbase:XB-GENE-988862
InParanoid:Q6DJ48 Uniprot:Q6DJ48
Length = 368
Score = 106 (42.4 bits), Expect = 0.00046, P = 0.00046
Identities = 41/158 (25%), Positives = 67/158 (42%)
Query: 11 KLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPC 69
KL D+L L + P F G + + +++GT+ K + F + VDD TG + C
Sbjct: 25 KLYIKDILELKESQQVPGIFFYRGHPIKQVDVLGTVVFVREKEN-FYSYGVDDSTGVISC 83
Query: 70 VLWLNHL-TSLYLP----RRDPSTVRLIAGVATDF------AAKIKIGLVARVRGRIASY 118
W + T + P R S+ + + + + AK+ IG RVRG I +
Sbjct: 84 TCWKSTAPTEVSSPGTSARHVSSSSKDLDVMMRELYKEESKKAKLDIGDTIRVRGSIKVF 143
Query: 119 RGDVQITVSDVVIEKDPNMEV--LHWLDCLRLARKRYD 154
R +I S +DP +++ D + R YD
Sbjct: 144 RDQREIVASVFYKVEDPKLDIQMARMFDLPYMYRNVYD 181
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.138 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 160 160 0.00097 106 3 11 22 0.46 31
30 0.43 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 584 (62 KB)
Total size of DFA: 142 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.88u 0.13s 15.01t Elapsed: 00:00:00
Total cpu time: 14.88u 0.13s 15.01t Elapsed: 00:00:00
Start: Fri May 10 04:53:03 2013 End: Fri May 10 04:53:03 2013