BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043474
         (160 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KF6|A Chain A, Crystal Structure Of S. Pombe Stn1-Ten1 Complex
          Length = 159

 Score = 31.6 bits (70), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 27/116 (23%)

Query: 40  EIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDF 99
           +IVG I + D    K +  TVDD +G V                     +R++  +  DF
Sbjct: 51  QIVGYIAAIDIYEGKHV-LTVDDCSGMV---------------------LRVVFIIQDDF 88

Query: 100 -----AAKIKIGLVARVRGRIASYRGDVQITVSDVVIEKDPNMEVLHWLDCLRLAR 150
                A  +  G V  V G+I S+R +V++        +DPN E   W   +R  +
Sbjct: 89  SMSKRAISMSPGNVVCVFGKINSFRSEVELIAQSFEELRDPNDEWKAWQKRMRYKK 144


>pdb|1ZUP|A Chain A, Crystal Structure Of A Putative Nuclease With A
           Ribonuclease H-Like Motif Fold (Tm1739) From Thermotoga
           Maritima At 2.20 A Resolution
 pdb|1ZUP|B Chain B, Crystal Structure Of A Putative Nuclease With A
           Ribonuclease H-Like Motif Fold (Tm1739) From Thermotoga
           Maritima At 2.20 A Resolution
          Length = 315

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 27  ATFSRSGKLLSR-----AEIVGTITSRDHKPSKFIKFTVDDG-TG-----CVPCVLW--L 73
            TF    + L        EI+  I   D K   F++ T D+G TG     CV  V+W   
Sbjct: 34  QTFVEESRFLEEDEQREGEILDQIIFVDGKRRSFVRITTDEGITGIFAELCVGAVIWDRE 93

Query: 74  NHLTSLYLPRRDPSTVRLIAGVATDFAAK 102
               +L+ P + P   R++ G +  F  +
Sbjct: 94  GGTKTLFSPDKPPVKERVL-GFSQSFQEE 121


>pdb|2GU1|A Chain A, Crystal Structure Of A Zinc Containing Peptidase From
           Vibrio Cholerae
          Length = 361

 Score = 27.3 bits (59), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 29/107 (27%)

Query: 2   DHTLQNTHVKLLAFDL----LSLTPTPDPATFSRSGKLLSRAEIVGTITSRDHKPSKFIK 57
           +H   N+ +K ++F L    +S     D   + R+G  L RA               F +
Sbjct: 159 EHNTGNSEIKAISFKLAKGDVSAFLAEDGRFYDRAGNSLERA---------------FNR 203

Query: 58  FTVDDGTGCVPCVLWLNHLTSLYLPRRD-PSTVRLIAGVATDFAAKI 103
           + VD              +TS + P+R  P T R++    TDFA  I
Sbjct: 204 YPVDKA---------YRQITSGFNPKRKHPVTGRVVPHNGTDFATPI 241


>pdb|3UJZ|A Chain A, Crystal Structure Of Enterohemorrhagic E. Coli Stce
          Length = 869

 Score = 26.6 bits (57), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 15  FDLLSLTPTPDPATFSRSGKLLSRAEIVGTITS 47
            D  SLTP P+  T++ +G+ L   E  G I S
Sbjct: 750 LDTKSLTPAPEGLTYTVNGQALPAKENEGCIVS 782


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,622,775
Number of Sequences: 62578
Number of extensions: 166599
Number of successful extensions: 299
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 4
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)