BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043474
(160 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LMK5|STN1_ARATH CST complex subunit STN1 OS=Arabidopsis thaliana GN=STN1 PE=1 SV=1
Length = 160
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 114/160 (71%), Gaps = 3/160 (1%)
Query: 1 MDHTLQNTHVKLLAFDLLSLTPTP-DPATFSR-SGKLLSRAEIVGTITSRDHKPSKFIKF 58
MD +LQ+TH KL+A D+ LT +P + +FS G +SR EIVGTI SRD P KF+KF
Sbjct: 1 MDRSLQSTHAKLVARDIQRLTQSPTESNSFSLLGGACVSRVEIVGTIVSRDLTP-KFLKF 59
Query: 59 TVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIASY 118
VDDGTGCV CV+WLN LTS Y R DP+T+ L+A A AA+I+IG VARVRGR+ SY
Sbjct: 60 GVDDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSY 119
Query: 119 RGDVQITVSDVVIEKDPNMEVLHWLDCLRLARKRYDVVVN 158
RG +QIT + V E+DPN E+LHWL+CL+L + Y V +
Sbjct: 120 RGVMQITANVAVAERDPNAEILHWLECLKLGQSCYRVRIQ 159
>sp|D2GXY4|STN1_AILME CST complex subunit STN1 OS=Ailuropoda melanoleuca GN=OBFC1 PE=3
SV=2
Length = 367
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 10 VKLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVP 68
KL D+L L + P F +G + + EI+GT+ R K + F + VDDGTG +
Sbjct: 26 AKLYIGDILDLKESRQVPGVFFYNGHPIKQVEILGTVIGRREKDA-FYSYGVDDGTGVIN 84
Query: 69 CVLWLNHLTSLYLPRRDPSTVRLIAGV------ATDFAAKIKIGLVARVRGRIASYRGDV 122
C+ W + V + + KI+IG + ++RG + +YR +
Sbjct: 85 CICWKKSNNAAPSSAAPALGVLNLTSQLKKLQETIEQKTKIEIGDIVQIRGYVHTYREER 144
Query: 123 QITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
+I V+ DP N+++ L+ + RK YD
Sbjct: 145 EIRVTTYYKVDDPVCNIQIARMLELPSIYRKVYD 178
>sp|Q8K2X3|STN1_MOUSE CST complex subunit STN1 OS=Mus musculus GN=Obfc1 PE=1 SV=2
Length = 378
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 13/157 (8%)
Query: 10 VKLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVP 68
KL D+L + + P T+ +G + R +I+G + S + + F + VDD TG +
Sbjct: 34 AKLYIKDILEMKESQQVPGTYFYNGHPIRRVDIMGAVISVKERET-FYSYGVDDATGVIN 92
Query: 69 CVLW--LNHLTSLYLP-----RRDPSTVRLIAGVATDFAAKIKIGL--VARVRGRIASYR 119
CV W L++ S P R+ S + + K +IG+ + RVRG + +R
Sbjct: 93 CVCWKKLSNAESSSDPAILSTARELSMTSQLKKLQETIEQKTRIGIGDIIRVRGSVRMFR 152
Query: 120 GDVQITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
+ +I + DP NM++ L+ +L +K YD
Sbjct: 153 EEREICANIYYKVDDPVWNMQIARMLELPKLYQKVYD 189
>sp|Q08DB2|STN1_BOVIN CST complex subunit STN1 OS=Bos taurus GN=OBFC1 PE=2 SV=1
Length = 370
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 10 VKLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVP 68
KL D+L L + F +G + + +I+GT+ K + F + VDD TG +
Sbjct: 27 AKLYIRDILDLKESGQVQGVFFYNGHPIKQVDILGTVIGVREKDA-FYSYGVDDSTGVIN 85
Query: 69 CVLW--LNHLTSLYL----PRRDPSTVRLIAGVATDFA--AKIKIGLVARVRGRIASYRG 120
C+ W LN+ S R+ S + + A AK++IG + RVRG I +RG
Sbjct: 86 CICWKRLNNTKSSSATATPSARELSLTSQLKKLQETIAQRAKLEIGDIIRVRGHIRMFRG 145
Query: 121 DVQITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
+ +I + DP N+++ L+ + RK YD
Sbjct: 146 EREIHATTYYKVDDPVCNVQIARMLELPAIYRKVYD 181
>sp|Q6AYD2|STN1_RAT CST complex subunit STN1 OS=Rattus norvegicus GN=Obfc1 PE=2 SV=1
Length = 408
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 11 KLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPC 69
KL D+L + + P + +G + R +I+G + S + + F + VDD TG + C
Sbjct: 35 KLYIKDILEMKESQQVPGMYFYNGHPIRRVDIMGAVISVKERET-FYSYGVDDATGVINC 93
Query: 70 VLWL---NHLTS----LYLPRRDPSTVRLIAGVATDFAAKIKIGL--VARVRGRIASYRG 120
V W N +S + R+ S + + K KIG+ + RVRG + +R
Sbjct: 94 VCWKRPSNAESSSDPAILSTSRELSMTSQLKKLQETIEQKTKIGIGDIIRVRGYVRMFRE 153
Query: 121 DVQITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
+ +I + DP NM++ L+ L +K YD
Sbjct: 154 EREICATIYYKVDDPVWNMQIARMLELPELYKKVYD 189
>sp|Q9H668|STN1_HUMAN CST complex subunit STN1 OS=Homo sapiens GN=OBFC1 PE=1 SV=2
Length = 368
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 10/154 (6%)
Query: 10 VKLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVP 68
KL D+L + + P F +G + + +++GT+ + + F + VDD TG +
Sbjct: 27 AKLYIRDILDMKESRQVPGVFLYNGHPIKQVDVLGTVIGVRERDA-FYSYGVDDSTGVIN 85
Query: 69 CVLW--LNHLTSLYLPR--RDPSTVRLIAGVAT--DFAAKIKIGLVARVRGRIASYRGDV 122
C+ W LN + P R+ S + + + KI+IG RVRG I +YR +
Sbjct: 86 CICWKKLNTESVSAAPSAARELSLTSQLKKLQETIEQKTKIEIGDTIRVRGSIRTYREER 145
Query: 123 QITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
+I + DP N+++ L+ + RK YD
Sbjct: 146 EIHATTYYKVDDPVWNIQIARMLELPTIYRKVYD 179
>sp|Q4R804|STN1_MACFA CST complex subunit STN1 OS=Macaca fascicularis GN=OBFC1 PE=2 SV=1
Length = 368
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 10/154 (6%)
Query: 10 VKLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVP 68
KL D+L + + P F +G + + +++GT+ + + F + VDD TG +
Sbjct: 27 AKLYIRDILDMKESRQVPGVFLYNGHPIKQVDVLGTVVGVRERDA-FYSYGVDDSTGVIN 85
Query: 69 CVLW--LNHLTSLYLPR--RDPSTVRLIAGVATDFA--AKIKIGLVARVRGRIASYRGDV 122
C+ W LN + P R+ S + + KI+IG RVRG I +YR +
Sbjct: 86 CICWKKLNTESVSAAPSAARELSLTSQLKKLQETIERRTKIEIGDTIRVRGSIRTYREER 145
Query: 123 QITVSDVVIEKDP--NMEVLHWLDCLRLARKRYD 154
+I + DP N+++ L+ + RK YD
Sbjct: 146 EIHATAYYKVDDPVWNIQIARMLELPTIYRKIYD 179
>sp|Q8LFJ8|RFA2B_ARATH Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana
GN=RPA2B PE=2 SV=1
Length = 278
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Query: 13 LAFDLLSLTPTPDPATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLW 72
L LS T + FS G + IVG I+ +++ ++ + F VDDGTG V CV W
Sbjct: 44 LTLKQLSSASTTGESNFSIDGVDIKTVVIVGRISRMENRITQ-VDFVVDDGTGWVDCVRW 102
Query: 73 LNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIASYRGDVQITVSDVVIE 132
+ A T+ +K+G+ R+ G + ++G + V V
Sbjct: 103 CH------------------ARQETEEMEAVKLGMYVRLHGHLKIFQGKRSVNVFSVRPV 144
Query: 133 KDPNMEVLHWLDCL 146
D N V H+ +C+
Sbjct: 145 TDFNEIVHHFTECM 158
>sp|Q9ZQ19|RFA2A_ARATH Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana
GN=RPA2A PE=1 SV=2
Length = 279
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 32 SGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRL 91
+G L+ +VG + +D ++FT+DDGTG + C W+ S R+ +VR
Sbjct: 66 NGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWV----SETFDAREMESVR- 120
Query: 92 IAGVATDFAAKIKIGLVARVRGRIASYRGDVQITVSDVVIEKDPNMEVLHWLDCLRL 148
G R+ G + +++G Q+ V V D N H+++C+
Sbjct: 121 -------------DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHF 164
>sp|Q6DJ48|STN1_XENTR CST complex subunit STN1 OS=Xenopus tropicalis GN=obfc1 PE=2 SV=1
Length = 368
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 11 KLLAFDLLSLTPTPD-PATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPC 69
KL D+L L + P F G + + +++GT+ K + F + VDD TG + C
Sbjct: 25 KLYIKDILELKESQQVPGIFFYRGHPIKQVDVLGTVVFVREKEN-FYSYGVDDSTGVISC 83
Query: 70 VLWLNHL-TSLYLPRRDPSTVRLIAGVATDF-------------AAKIKIGLVARVRGRI 115
W + T + P ++ R ++ + D AK+ IG RVRG I
Sbjct: 84 TCWKSTAPTEVSSP---GTSARHVSSSSKDLDVMMRELYKEESKKAKLDIGDTIRVRGSI 140
Query: 116 ASYRGDVQITVSDVVIEKDPNMEV--LHWLDCLRLARKRYD 154
+R +I S +DP +++ D + R YD
Sbjct: 141 KVFRDQREIVASVFYKVEDPKLDIQMARMFDLPYMYRNVYD 181
>sp|C1C4M3|STN1_LITCT CST complex subunit STN1 OS=Lithobates catesbeiana GN=obfc1 PE=2
SV=1
Length = 336
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 34 KLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIA 93
+L ++ G +DH P K + D G V CV + S R S +
Sbjct: 28 ELKESNQVPGIFFYKDH-PIKQV-----DILGTVVCVREKDAFYSYGDVHRSTSGANDLD 81
Query: 94 GVATDF------AAKIKIGLVARVRGRIASYRGDVQITVSDVVIEKDP--NMEVLHWLDC 145
G+ + AK++IG V RVRG I +R ++ S DP +M+++ L+
Sbjct: 82 GLVQELHRQESSKAKMEIGDVIRVRGYIKVFRMQREVVASIFYKVDDPTLDMQIMRMLEL 141
Query: 146 LRLARKRYD 154
L + YD
Sbjct: 142 PYLYKHAYD 150
>sp|A6LU45|EX7L_CLOB8 Exodeoxyribonuclease 7 large subunit OS=Clostridium beijerinckii
(strain ATCC 51743 / NCIMB 8052) GN=xseA PE=3 SV=1
Length = 399
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 35 LLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAG 94
+LS + G I++ + S I FT+ D +G + CV++ ++ L P + V +I G
Sbjct: 24 ILSNLSVKGEISNLKYHSSGHIYFTLKDSSGRINCVMFKSNAVLLDFPLEEGMEV-IIKG 82
Query: 95 VATDFAA 101
A+ + A
Sbjct: 83 RASIYPA 89
>sp|A9KMC1|EX7L_CLOPH Exodeoxyribonuclease 7 large subunit OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=xseA PE=3 SV=1
Length = 401
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 35 LLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAG 94
+L+R + G +++ + S I FT+ D TG + CVL+ + T L + +V ++
Sbjct: 23 VLNRIYMKGEVSNCKYHTSGHIYFTLKDETGQMACVLFAGYRTGLPFRLEEGQSVIVLGS 82
Query: 95 VA 96
++
Sbjct: 83 IS 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,426,081
Number of Sequences: 539616
Number of extensions: 2143711
Number of successful extensions: 4861
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4847
Number of HSP's gapped (non-prelim): 14
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)