Query 043474
Match_columns 160
No_of_seqs 119 out of 583
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:57:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kf6_A Protein STN1; OB fold, 100.0 1.3E-35 4.6E-40 220.5 14.2 134 3-157 12-149 (159)
2 4gop_B Putative uncharacterize 100.0 9.5E-34 3.3E-38 205.9 14.5 128 6-151 6-133 (136)
3 3kdf_D Replication protein A 3 100.0 1.3E-32 4.5E-37 199.0 16.2 124 7-151 4-128 (132)
4 2pi2_A Replication protein A 3 100.0 1.3E-27 4.3E-32 191.4 16.3 126 6-152 43-169 (270)
5 3kf8_A Protein STN1; OB fold; 99.9 1.7E-23 5.9E-28 161.4 15.4 139 3-158 43-212 (220)
6 3mxn_B RECQ-mediated genome in 99.1 3E-09 1E-13 76.6 13.5 118 8-152 24-149 (150)
7 1o7i_A SSB, SSO2364, single st 99.0 3.6E-09 1.2E-13 74.4 10.1 74 38-135 14-99 (119)
8 2kbn_A Conserved protein; nucl 99.0 3E-09 1E-13 73.8 8.5 73 37-132 16-91 (109)
9 2k50_A Replication factor A re 98.9 9.3E-09 3.2E-13 71.6 9.6 74 37-131 17-101 (115)
10 2k75_A Uncharacterized protein 98.8 2.6E-08 8.7E-13 68.8 9.7 72 38-136 15-97 (106)
11 3e0e_A Replication protein A; 98.8 8.5E-08 2.9E-12 65.1 10.0 73 37-132 12-93 (97)
12 3dm3_A Replication factor A; p 98.5 2.2E-06 7.5E-11 58.9 10.5 75 37-134 15-99 (105)
13 3au7_A TIAS, putative uncharac 97.9 5.4E-05 1.9E-09 63.1 9.2 78 34-133 282-360 (402)
14 1wjj_A Hypothetical protein F2 97.6 0.0003 1E-08 50.9 8.6 68 37-128 27-113 (145)
15 1nnx_A Protein YGIW; structura 97.6 0.001 3.6E-08 45.8 10.3 70 37-132 38-107 (109)
16 3nem_A Aspartyl-tRNA synthetas 97.4 0.0011 3.9E-08 55.8 10.2 80 37-133 17-99 (438)
17 1e1o_A Lysyl-tRNA synthetase, 97.4 0.0014 4.9E-08 56.2 10.8 80 37-133 65-146 (504)
18 1wyd_A Hypothetical aspartyl-t 97.3 0.0015 5.2E-08 54.9 10.3 77 37-133 17-96 (429)
19 3m4p_A Ehasnrs, asparaginyl-tR 97.3 0.002 6.9E-08 54.6 10.8 80 37-134 31-121 (456)
20 1eov_A ASPRS, aspartyl-tRNA sy 97.2 0.0017 5.8E-08 55.4 9.3 83 37-133 37-128 (487)
21 4ex5_A Lysine--tRNA ligase; st 97.2 0.0013 4.6E-08 56.7 8.6 80 37-133 87-167 (529)
22 1x54_A Asparaginyl-tRNA synthe 97.2 0.0013 4.4E-08 55.4 8.3 80 37-133 17-99 (434)
23 3a74_A Lysyl-tRNA synthetase; 97.2 0.0011 3.8E-08 56.7 7.9 80 37-133 57-137 (493)
24 1c0a_A Aspartyl tRNA synthetas 97.1 0.0019 6.3E-08 56.4 9.2 78 37-133 16-103 (585)
25 1l0w_A Aspartyl-tRNA synthetas 97.1 0.0027 9.1E-08 55.4 10.2 77 37-133 17-101 (580)
26 3i7f_A Aspartyl-tRNA synthetas 97.1 0.0031 1.1E-07 54.6 10.2 82 37-134 63-152 (548)
27 2xgt_A Asparaginyl-tRNA synthe 97.1 0.0041 1.4E-07 52.4 10.7 78 37-133 12-95 (435)
28 1n9w_A Aspartyl-tRNA synthetas 97.1 0.0052 1.8E-07 51.6 10.8 69 37-133 14-86 (422)
29 3f2b_A DNA-directed DNA polyme 97.1 0.0029 1E-07 58.4 9.9 82 35-134 16-103 (1041)
30 2hpi_A DNA polymerase III alph 97.0 0.001 3.5E-08 62.4 6.3 76 37-133 1043-1122(1220)
31 3bju_A Lysyl-tRNA synthetase; 97.0 0.0042 1.4E-07 53.5 9.6 83 37-133 56-139 (521)
32 4gs3_A Single-stranded DNA-bin 97.0 0.011 3.7E-07 40.5 9.8 75 37-133 12-106 (107)
33 3kdf_A Replication protein A 1 96.5 0.057 2E-06 37.6 11.0 80 37-148 23-105 (121)
34 2pi2_E Replication protein A 1 96.4 0.15 5.1E-06 36.4 12.8 80 37-148 44-126 (142)
35 1ynx_A Replication factor-A pr 96.2 0.0039 1.3E-07 42.9 3.5 42 53-114 39-80 (114)
36 1txy_A Primosomal replication 96.1 0.081 2.8E-06 35.5 9.6 77 37-133 3-101 (104)
37 3koj_A Uncharacterized protein 95.7 0.076 2.6E-06 36.2 8.4 76 36-131 11-108 (108)
38 1qzg_A Protection of telomeres 95.7 0.25 8.5E-06 36.9 11.8 71 37-128 43-127 (187)
39 4gop_A Putative uncharacterize 95.6 0.079 2.7E-06 36.4 8.3 67 37-134 19-89 (114)
40 1xjv_A Protection of telomeres 95.5 0.23 8E-06 39.3 11.8 71 37-128 16-94 (294)
41 4ah6_A Aspartate--tRNA ligase, 95.5 0.026 9E-07 49.5 6.6 77 37-133 25-111 (617)
42 3fhw_A Primosomal replication 95.5 0.13 4.6E-06 35.4 9.0 47 67-134 49-98 (115)
43 1jmc_A Protein (replication pr 95.1 0.023 8E-07 43.6 4.6 77 38-134 20-115 (246)
44 1jmc_A Protein (replication pr 94.8 0.055 1.9E-06 41.5 6.0 68 37-127 139-218 (246)
45 3en2_A Probable primosomal rep 94.5 0.14 4.8E-06 34.5 6.7 43 67-130 50-95 (101)
46 1v1q_A Primosomal replication 94.3 0.91 3.1E-05 32.0 11.5 78 37-134 20-119 (134)
47 3k8a_A Putative primosomal rep 94.3 0.62 2.1E-05 31.3 9.6 74 37-132 8-101 (103)
48 3tqy_A Single-stranded DNA-bin 94.0 0.32 1.1E-05 35.2 8.2 81 35-135 7-115 (158)
49 3vdy_A SSB, single-stranded DN 94.0 0.21 7.1E-06 34.0 6.8 82 35-136 4-110 (116)
50 1gm5_A RECG; helicase, replica 93.7 0.08 2.7E-06 47.6 5.4 70 37-128 166-242 (780)
51 4gop_C Putative uncharacterize 93.6 0.077 2.6E-06 44.4 4.9 70 38-126 135-216 (444)
52 1z9f_A Single-strand binding p 93.5 0.21 7E-06 36.1 6.3 81 35-135 15-122 (153)
53 2vw9_A Single-stranded DNA bin 93.4 0.22 7.5E-06 35.0 6.4 50 66-135 50-108 (134)
54 1l1o_C Replication protein A 7 93.1 0.27 9.1E-06 36.3 6.6 84 56-149 81-178 (181)
55 3rn5_A Interferon-inducible pr 93.1 0.82 2.8E-05 34.4 9.1 49 54-125 139-188 (208)
56 3eiv_A Single-stranded DNA-bin 92.3 0.6 2.1E-05 35.1 7.7 47 65-131 53-108 (199)
57 1se8_A Single-strand binding p 92.3 0.57 2E-05 37.4 8.0 79 36-135 129-234 (301)
58 1sr3_A APO-CCME; OB fold, beta 92.2 0.82 2.8E-05 32.4 7.8 57 37-117 29-88 (136)
59 2fxq_A Single-strand binding p 92.0 0.64 2.2E-05 36.2 7.8 80 35-135 127-230 (264)
60 1qvc_A Single stranded DNA bin 91.5 0.4 1.4E-05 34.1 5.7 65 35-119 4-89 (145)
61 4dka_C RNA-editing complex pro 91.5 1.7 5.7E-05 29.3 8.2 65 37-119 4-77 (105)
62 4gop_C Putative uncharacterize 91.5 0.53 1.8E-05 39.3 7.2 90 56-149 346-443 (444)
63 3ull_A DNA binding protein; DN 91.3 0.7 2.4E-05 32.2 6.7 36 101-136 84-128 (132)
64 3ulp_A Single-strand binding p 91.2 0.3 1E-05 33.7 4.7 67 34-120 4-92 (124)
65 1jb7_A Telomere-binding protei 91.2 1.7 5.7E-05 37.1 10.1 71 36-127 49-139 (495)
66 1j6q_A Cytochrome C maturation 91.1 1.1 3.7E-05 31.7 7.4 76 37-139 33-112 (136)
67 1se8_A Single-strand binding p 90.9 1.3 4.6E-05 35.2 8.8 79 36-134 5-111 (301)
68 3rlo_A Gamma-interferon-induci 90.3 0.85 2.9E-05 34.2 6.5 22 54-75 135-156 (204)
69 3lgj_A Single-stranded DNA-bin 89.5 0.74 2.5E-05 33.7 5.7 81 35-135 22-135 (169)
70 3afp_A Single-stranded DNA-bin 89.4 0.64 2.2E-05 33.9 5.3 62 36-117 4-85 (168)
71 3k7u_C MP18 RNA editing comple 89.2 0.74 2.5E-05 33.0 5.4 62 36-117 6-85 (148)
72 4dam_A Single-stranded DNA-bin 88.3 0.51 1.8E-05 32.9 4.0 78 34-131 13-117 (128)
73 2fxq_A Single-strand binding p 88.3 3 0.0001 32.3 8.8 81 36-136 5-111 (264)
74 2oq0_A Gamma-interferon-induci 88.0 5 0.00017 30.1 9.3 22 54-75 143-164 (206)
75 3pgz_A Single-stranded DNA-bin 87.5 0.97 3.3E-05 33.8 5.2 65 35-119 25-111 (193)
76 3stb_C RNA-editing complex pro 86.3 1.3 4.3E-05 31.8 5.1 73 26-117 34-119 (148)
77 1eqq_A Single stranded DNA bin 85.7 0.34 1.1E-05 35.8 1.9 66 35-120 5-91 (178)
78 2kct_A Cytochrome C-type bioge 84.6 6.6 0.00022 25.8 9.7 71 37-133 9-85 (94)
79 4dni_A Fusion protein of RNA-e 83.2 2.4 8.3E-05 33.0 5.9 62 35-117 145-225 (257)
80 1xjv_A Protection of telomeres 80.5 8.3 0.00028 30.2 8.2 30 37-66 155-184 (294)
81 3k81_C MP18 RNA editing comple 78.1 2.8 9.4E-05 30.5 4.3 63 35-117 21-101 (164)
82 4dni_A Fusion protein of RNA-e 77.5 7 0.00024 30.4 6.8 80 33-132 27-127 (257)
83 4hik_A Protection of telomeres 75.3 6.7 0.00023 27.8 5.6 28 37-65 15-42 (143)
84 3u4v_A Telomerase-associated p 61.6 30 0.001 22.4 7.1 55 51-126 47-103 (117)
85 3mxn_A RECQ-mediated genome in 45.7 49 0.0017 23.7 5.6 38 35-72 36-78 (157)
86 3kf6_B Protein TEN1; OB fold, 44.5 68 0.0023 21.4 10.7 91 12-148 10-100 (105)
87 1jb7_A Telomere-binding protei 44.3 1E+02 0.0034 26.1 8.2 34 37-70 222-255 (495)
88 3kf8_B Protein TEN1; OB fold; 43.9 76 0.0026 21.8 9.9 76 35-135 22-102 (123)
89 3u58_A Tetrahymena TEB1 AB; te 42.4 75 0.0025 22.5 6.0 55 51-126 43-99 (213)
90 3nbi_A RECQ-mediated genome in 41.1 81 0.0028 23.6 6.5 61 54-135 136-196 (216)
91 2cwp_A Metrs related protein; 39.5 75 0.0026 21.1 5.5 30 41-70 18-49 (112)
92 1mkh_A Metrs;, C-terminal doma 37.1 88 0.003 20.6 5.5 30 41-70 14-45 (107)
93 1fr3_A MOP, molybdate/tungstat 36.7 59 0.002 18.5 5.4 32 40-72 8-39 (67)
94 3ers_X TRNA-binding protein YG 36.2 82 0.0028 21.2 5.3 30 41-70 15-46 (118)
95 3u50_C Telomerase-associated p 35.4 21 0.00071 26.0 2.3 78 56-133 77-169 (172)
96 2jni_A Arenicin-2; peptide, an 34.4 11 0.00038 18.2 0.4 16 107-122 6-21 (26)
97 1pyb_A Methionyl-tRNA syntheta 33.3 95 0.0032 20.5 5.2 30 41-70 18-49 (111)
98 1c8c_A DNA-binding protein 7A; 31.3 26 0.00087 20.6 1.8 15 52-66 26-40 (64)
99 1miu_A BRCA2, breast cancer ty 28.4 1.3E+02 0.0043 27.0 6.4 55 34-112 609-664 (738)
100 2xvs_A Tetratricopeptide repea 26.7 1.8E+02 0.0061 20.9 7.7 37 39-76 77-116 (166)
101 3f1z_A Putative nucleic acid-b 26.5 1.4E+02 0.0047 19.6 4.9 67 37-120 50-120 (133)
102 3e0j_A DNA polymerase subunit 26.1 1.6E+02 0.0056 24.7 6.5 36 57-117 139-174 (476)
103 1ah9_A IF1, initiation factor 25.4 1.1E+02 0.0039 18.2 4.9 32 39-73 6-37 (71)
104 3i4o_A Translation initiation 25.2 1.3E+02 0.0044 18.8 5.1 51 38-112 13-63 (79)
105 3g48_A Chaperone CSAA; structu 23.5 1.2E+02 0.0041 20.1 4.4 32 41-72 16-51 (112)
106 1pxf_A Hypothetical protein YG 22.1 1.3E+02 0.0046 19.8 4.4 30 41-70 15-46 (111)
107 2vl6_A SSO MCM N-TER, minichro 21.9 1.7E+02 0.006 22.0 5.6 34 100-133 222-266 (268)
108 1gd7_A CSAA protein; oligonucl 21.1 1.8E+02 0.0063 19.0 5.1 30 41-70 13-46 (109)
109 1s1d_A Apyrase; adpase, five-b 20.8 45 0.0015 26.8 2.0 13 56-68 106-118 (331)
110 2fhd_A RAD9 homolog, DNA repai 20.4 1.3E+02 0.0044 21.4 4.1 29 37-66 24-52 (153)
111 3i84_A Cervical EMMPRIN; CD147 20.4 1.8E+02 0.0063 18.7 6.0 36 27-72 41-78 (98)
No 1
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-35 Score=220.51 Aligned_cols=134 Identities=22% Similarity=0.261 Sum_probs=114.2
Q ss_pred CCccccccceehhhhhccCCCC-CC--CceEECCeEeeEEEEEEEEEEeeccCCceEEEEEeCCCc-eEEEEEeecCccC
Q 043474 3 HTLQNTHVKLLAFDLLSLTPTP-DP--ATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTG-CVPCVLWLNHLTS 78 (160)
Q Consensus 3 ~p~~~~~~~l~i~~i~~l~~~~-~~--~~~~~~~~~i~~v~ivG~V~~~~~~~~~~~~~~IdDgTG-~I~~~~w~~~~~~ 78 (160)
|||+++|+||+|+||+.|++.+ .+ +. +++|+||++|+|||.|++++.++ +++.|+|||+|| +|+|++|.+....
T Consensus 12 sPt~~~~v~L~i~DI~~l~~~~~~~~~~~-f~~n~PI~~V~IvGiVv~~~~~~-~~~~ytIDD~TG~~I~cv~w~~~~~~ 89 (159)
T 3kf6_A 12 FPTLSRWNPMFISDVHKISFHPHLQRYIG-FWMGFPIRWIQIVGYIAAIDIYE-GKHVLTVDDCSGMVLRVVFIIQDDFS 89 (159)
T ss_dssp ----CCCCBCCHHHHTTCBCCCC---CCE-EETTEEECEEEEEEEEEEEEEET-TEEEEEEECSSSCEEEEEEEGGGCHH
T ss_pred CcchhheecchHHHHHhchhcCCCCCcce-eECCeEEEEEEEEEEEEEEEEeC-CEEEEEEecCCCCeEEEEEEccCCCC
Confidence 8999999999999999999877 33 44 89999999999999999999988 779999999999 5999999886421
Q ss_pred CCCCCCCCCccccccccccccccccccCcEEEEEEEeceeCCceEEEEEEEEEcCChhHHHHHHHHHHHHHHhhcccCC
Q 043474 79 LYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIASYRGDVQITVSDVVIEKDPNMEVLHWLDCLRLARKRYDVVV 157 (160)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~~f~~~~qi~~~~i~~v~d~n~~~~h~le~~~~~~~~~~~p~ 157 (160)
.......+++|++|+|+|+|+.|+|++||.+++++++.|+|+|+.||.++++++++ + .||
T Consensus 90 -----------------~~~~~~~l~~G~~VrV~G~v~~fr~~rqI~~~~i~~v~d~n~Ev~~W~~~~r~~~~-l-~pW 149 (159)
T 3kf6_A 90 -----------------MSKRAISMSPGNVVCVFGKINSFRSEVELIAQSFEELRDPNDEWKAWQKRMRYKKN-L-TKI 149 (159)
T ss_dssp -----------------HHHHHTTCCTTCEEEEEEEEECSSSSCEEEEEEEEEECSTHHHHHHHHHHHHHHHH-H-HHH
T ss_pred -----------------cccccccCCCCCEEEEEEEEEeeCCEEEEEEEEEEECCCcHHHHHHHHHHHHHHHh-C-CCe
Confidence 00123457899999999999999999999999999999999999999999999998 5 576
No 2
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=100.00 E-value=9.5e-34 Score=205.94 Aligned_cols=128 Identities=20% Similarity=0.315 Sum_probs=111.1
Q ss_pred cccccceehhhhhccCCCCCCCceEECCeEeeEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCC
Q 043474 6 QNTHVKLLAFDLLSLTPTPDPATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRD 85 (160)
Q Consensus 6 ~~~~~~l~i~~i~~l~~~~~~~~~~~~~~~i~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~ 85 (160)
..+..|++|+||++++++..++.|.++|+++++|++||.|++++..+ +|+.|+||||||+|+|++|.+.+..
T Consensus 6 ~~~l~PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~-~~~~~~ldD~TG~I~~~~W~~~~~~------- 77 (136)
T 4gop_B 6 NNTLRPVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNA-TNVAYSVEDGTGQIEVRQWLDSSSD------- 77 (136)
T ss_dssp -CCEEECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECS-SEEEEEEECSSCEEEEEEECC-----------
T ss_pred CCcEEeEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecC-CeEEEEEECCCCCEEEEEecccCCc-------
Confidence 35678999999999987655688999999999999999999999887 8899999999999999999876531
Q ss_pred CCccccccccccccccccccCcEEEEEEEeceeCCceEEEEEEEEEcCChhHHHHHHHHHHHHHHh
Q 043474 86 PSTVRLIAGVATDFAAKIKIGLVARVRGRIASYRGDVQITVSDVVIEKDPNMEVLHWLDCLRLARK 151 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~~f~~~~qi~~~~i~~v~d~n~~~~h~le~~~~~~~ 151 (160)
+......+++|+||+|.|+++.|+|++||.+..|+|++|+||+++|||||+++|..
T Consensus 78 ----------~~~~~~~~~~g~yVrV~G~v~~f~g~~qi~~~~ir~v~d~Nei~~H~Le~i~~hl~ 133 (136)
T 4gop_B 78 ----------DSSKASEIRNNVYVRVLGTLKSFQNRRSISSGHMRPVIDYNEVMFHRLEAVHAHLQ 133 (136)
T ss_dssp --------------CCSCCTTCEEEEEEEEEEETTEEEEEESEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ----------ccccccccCCCCEEEEEEEEEEeCCEEEEEEEEEEECCCccHHHHHHHHHHHHHHh
Confidence 01134678999999999999999999999999999999999999999999998754
No 3
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=100.00 E-value=1.3e-32 Score=198.99 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=106.7
Q ss_pred ccccceehhhhhccCCCCCCCceEECCeEeeEEEEEEEEEEeeccCCceEEEEEeCCCc-eEEEEEeecCccCCCCCCCC
Q 043474 7 NTHVKLLAFDLLSLTPTPDPATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTG-CVPCVLWLNHLTSLYLPRRD 85 (160)
Q Consensus 7 ~~~~~l~i~~i~~l~~~~~~~~~~~~~~~i~~v~ivG~V~~~~~~~~~~~~~~IdDgTG-~I~~~~w~~~~~~~~~~~~~ 85 (160)
....|+.|+||+++.+. ++.|.++|+++++|++||.|++++..+ +|+.|+|||||| +|+|++|.+.+..
T Consensus 4 ~~l~PvtIkqil~a~~~--~~~f~i~g~~i~~V~iVG~V~~~~~~~-~~~~~~ldD~TG~~I~~~~W~~~~~~------- 73 (132)
T 3kdf_D 4 QHIVPCTISQLLSATLV--DEVFRIGNVEISQVTIVGIIRHAEKAP-TNIVYKIDDMTAAPMDVRQWVDTDDT------- 73 (132)
T ss_dssp -CCEECCHHHHHTCEES--SSCEEETTEECCEEEEEEEEEEEEECS-SEEEEEEECSSSSCEEEEEEC------------
T ss_pred CceeeEEHHHHhhCccC--CCcEEECCEEEEEEEEEEEEEEEEEcC-CeEEEEEECCCCCEEEEEEEccCCCc-------
Confidence 35679999999998763 568999999999999999999999887 889999999999 9999999876531
Q ss_pred CCccccccccccccccccccCcEEEEEEEeceeCCceEEEEEEEEEcCChhHHHHHHHHHHHHHHh
Q 043474 86 PSTVRLIAGVATDFAAKIKIGLVARVRGRIASYRGDVQITVSDVVIEKDPNMEVLHWLDCLRLARK 151 (160)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~~f~~~~qi~~~~i~~v~d~n~~~~h~le~~~~~~~ 151 (160)
......+++|+||+|.|+++.|+|++||.+..|+|++|+||.++|||||+++|..
T Consensus 74 -----------~~~~~~~~~g~yVrV~G~l~~f~g~~qi~~~~ir~v~d~Nei~~H~Le~i~~hl~ 128 (132)
T 3kdf_D 74 -----------SSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMV 128 (132)
T ss_dssp ---------------CCCCTTCEEEEEEEEEEETTEEEEEEEEEEECSSTHHHHHHHHHHHHHHHH
T ss_pred -----------ccccccccCCCEEEEEEEEEeECCEEEEEEEEEEEcCCccHHHHHHHHHHHHHHe
Confidence 0124678999999999999999999999999999999999999999999998753
No 4
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=99.95 E-value=1.3e-27 Score=191.41 Aligned_cols=126 Identities=19% Similarity=0.224 Sum_probs=108.9
Q ss_pred cccccceehhhhhccCCCCCCCceEECCeEeeEEEEEEEEEEeeccCCceEEEEEeCCCc-eEEEEEeecCccCCCCCCC
Q 043474 6 QNTHVKLLAFDLLSLTPTPDPATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTG-CVPCVLWLNHLTSLYLPRR 84 (160)
Q Consensus 6 ~~~~~~l~i~~i~~l~~~~~~~~~~~~~~~i~~v~ivG~V~~~~~~~~~~~~~~IdDgTG-~I~~~~w~~~~~~~~~~~~ 84 (160)
.....|++|+||+++.. .++.|.++|+++.+|++||+|++++... +|+.|+|+|+|| +|+|++|.+.+..
T Consensus 43 ~~~l~PvtIkqil~a~~--~d~~f~i~g~~i~~V~ivG~V~~i~~~~-~~~~~~L~D~TG~~I~~k~W~~~~~~------ 113 (270)
T 2pi2_A 43 AQHIVPCTISQLLSATL--VDEVFRIGNVEISQVTIVGIIRHAEKAP-TNIVYKIDDMTAAPMDVRQWVDTDDT------ 113 (270)
T ss_dssp CCCCEECCHHHHHHCEE--ETTEEEETTEEESEEEEEEEEEEEEECS-SEEEEEEECSSSSCEEEEEECC----------
T ss_pred CCceEEEEHHHHhcCcc--CCCcEEECCEEEEEEEEEEEEEEEEecc-ceEEEEEECCCCCEEEEEEEcCcCcc------
Confidence 34568999999999864 3578999999999999999999998877 899999999999 8999999875431
Q ss_pred CCCccccccccccccccccccCcEEEEEEEeceeCCceEEEEEEEEEcCChhHHHHHHHHHHHHHHhh
Q 043474 85 DPSTVRLIAGVATDFAAKIKIGLVARVRGRIASYRGDVQITVSDVVIEKDPNMEVLHWLDCLRLARKR 152 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~~f~~~~qi~~~~i~~v~d~n~~~~h~le~~~~~~~~ 152 (160)
......+++|+||+|.|+|+.|++++||.+.+|+|++|+||.++|||||+++|...
T Consensus 114 ------------~~~~~~~~~G~yVrV~G~v~~f~g~~qi~i~~ir~v~d~nEi~~H~Le~i~~hl~~ 169 (270)
T 2pi2_A 114 ------------SSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVL 169 (270)
T ss_dssp ---------------CCCCCTTCEEEEEEEEEEETTEEEEEEEEEEECSCTHHHHHHHHHHHHHHHHH
T ss_pred ------------cchhhcCCCCCEEEEEEEEEecCCeeEEEEEEEEecCCHhHHHHHHHHHHHHHHHH
Confidence 01235789999999999999999999999999999999999999999999987754
No 5
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=99.91 E-value=1.7e-23 Score=161.44 Aligned_cols=139 Identities=13% Similarity=0.176 Sum_probs=114.6
Q ss_pred CCccccccceehhhhhccCCCC---------CCCceEECCeEeeEEEEEEEEEEeeccCC-------ceEEEEEeCCCce
Q 043474 3 HTLQNTHVKLLAFDLLSLTPTP---------DPATFSRSGKLLSRAEIVGTITSRDHKPS-------KFIKFTVDDGTGC 66 (160)
Q Consensus 3 ~p~~~~~~~l~i~~i~~l~~~~---------~~~~~~~~~~~i~~v~ivG~V~~~~~~~~-------~~~~~~IdDgTG~ 66 (160)
+||+++|+||+|+||+.++... .++.|+++|+||++|+|+|+|++++.+.. .|+.|+|||+||.
T Consensus 43 sPT~~~~vpL~I~DI~~l~~~~~~yg~~~~~~~~i~f~~NhPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~ 122 (220)
T 3kf8_A 43 APTFDKTIPLFISDINNSPNLYGIYNYIADHLRHVVLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGI 122 (220)
T ss_dssp STTTTSEEECCHHHHHTCCCTHHHHGGGGGGCTTCEEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSS
T ss_pred CcccCcccceEhHHhhhchhhhcccccccccCccEEEECCcccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCC
Confidence 7999999999999999998633 25789999999999999999999986652 5799999999996
Q ss_pred ---EEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEeceeCC--------ceEEEEEEEEEc---
Q 043474 67 ---VPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIASYRG--------DVQITVSDVVIE--- 132 (160)
Q Consensus 67 ---I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~~f~~--------~~qi~~~~i~~v--- 132 (160)
|.|++-.....+ .+ + .......|..|+|+|.++.|++ .+||.+++++.+
T Consensus 123 ~s~i~~k~~~~~~~~----~g----l---------~l~~~~~G~iV~VkG~i~~~r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 123 DSKIRVRLSQEQFKE----VG----L---------TLDKKNYGKIVELEGEIYNWYDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp SCEEEEEEEHHHHHT----TT----C---------CTTSCCTTCEEEEEEEEEECCCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred CceEEEEecHHHhhc----cC----c---------cccccCCCeEEEEEEEEEeeccccccccccceEEEEEEEEEeccC
Confidence 777654332210 00 0 0112448999999999999998 899999999999
Q ss_pred -CChhHHHHHHHHHHHHHHhhcccCCC
Q 043474 133 -KDPNMEVLHWLDCLRLARKRYDVVVN 158 (160)
Q Consensus 133 -~d~n~~~~h~le~~~~~~~~~~~p~~ 158 (160)
.|...|+.||-++++.++++++.||.
T Consensus 186 ~~dl~~Ei~~W~~~~~fR~~vL~~PWv 212 (220)
T 3kf8_A 186 PDGLHFEFEQWKKRMEFRKNNLVEPWV 212 (220)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccCCeE
Confidence 55589999999999999999999995
No 6
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=99.10 E-value=3e-09 Score=76.63 Aligned_cols=118 Identities=15% Similarity=0.063 Sum_probs=90.1
Q ss_pred cccceehhhhhccCCCCCCCceEEC-------CeEeeEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCC
Q 043474 8 THVKLLAFDLLSLTPTPDPATFSRS-------GKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLY 80 (160)
Q Consensus 8 ~~~~l~i~~i~~l~~~~~~~~~~~~-------~~~i~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~ 80 (160)
-.+|+|+.||.+.+++ ..+.|.+. .-++..|.+-|.|+.. .. . .+.|||+||++...--.+...
T Consensus 24 PpvK~l~~QLr~~~~~-~~~~w~l~r~~~g~~~l~~s~VWmQG~VV~~-~~--g--~~~LdDgTG~~~v~g~~~vp~--- 94 (150)
T 3mxn_B 24 PPLKVLAEQLRRDAEG-GPGAWRLSRAAAGRGPLDLAAVWMQGRVVMA-DR--G--EARLRDPSGDFSVRGLERVPR--- 94 (150)
T ss_dssp CCEECCHHHHHHHEES-CTTCCEECCTTTTCCCEECSEEEEEEEEEEE-ET--T--EEEEEETTEEEEEECGGGSCC---
T ss_pred CcHHHHHHHHHHHhhC-CCceEEEEecccCCccceeEEEEEEeEEEEe-CC--C--eEEEECCCceEEEeeccccCC---
Confidence 3569999999988663 33344333 2478999999999996 22 2 589999999977643221111
Q ss_pred CCCCCCCccccccccccccccccccCcEEEEEEEeceeCCceEEEEEEEEEcCCh-hHHHHHHHHHHHHHHhh
Q 043474 81 LPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIASYRGDVQITVSDVVIEKDP-NMEVLHWLDCLRLARKR 152 (160)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~~f~~~~qi~~~~i~~v~d~-n~~~~h~le~~~~~~~~ 152 (160)
-...++.|+||-|.|.+..-....-|.+.+|.-+++. +-|..+++|++++|+.+
T Consensus 95 ------------------g~p~l~~G~YVMV~G~v~~~s~eP~i~AvKm~DLS~~p~~E~mW~lEV~el~r~i 149 (150)
T 3mxn_B 95 ------------------GRPCLVPGKYVMVMGVVQACSPEPCLQAVKMTDLSDNPIHESMWELEVEDLHRNI 149 (150)
T ss_dssp ------------------CSCCCSTTCEEEEEEEEEECSSSCEEEEEEEEECCSCHHHHHHHHHHHHHHHTTC
T ss_pred ------------------CCcccCCCCEEEEEEEEEecCCCceEEEEEeeeCCCCcchHHHHHHHHHHHHhcC
Confidence 1245889999999999998888889999999988765 89999999999998864
No 7
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=98.99 E-value=3.6e-09 Score=74.39 Aligned_cols=74 Identities=22% Similarity=0.386 Sum_probs=58.5
Q ss_pred EEEEEEEEEEee------ccCC--ceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEE
Q 043474 38 RAEIVGTITSRD------HKPS--KFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVA 109 (160)
Q Consensus 38 ~v~ivG~V~~~~------~~~~--~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V 109 (160)
.+.+.|+|.++. .+++ +|..++|.|.||+|++++|.+.. +.++.|++|
T Consensus 14 ~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~------------------------~~~~~G~vv 69 (119)
T 1o7i_A 14 SVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA------------------------GSIKEGQVV 69 (119)
T ss_dssp SEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGT------------------------TCCCTTCEE
T ss_pred cEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChh------------------------hcCCCCCEE
Confidence 355666666653 2233 79999999999999999997643 247899999
Q ss_pred EEE-EEeceeCCceEEEEEE---EEEcCCh
Q 043474 110 RVR-GRIASYRGDVQITVSD---VVIEKDP 135 (160)
Q Consensus 110 ~V~-G~v~~f~~~~qi~~~~---i~~v~d~ 135 (160)
+|. |+++.|+|..||.+.+ |.++.++
T Consensus 70 ~i~~g~v~~~~g~~qL~i~~~~~i~~~~~~ 99 (119)
T 1o7i_A 70 KIENAWTTAFKGQVQLNAGSKTKIAEASED 99 (119)
T ss_dssp EEEEEEEEEETTEEEEEECTTCEEEECCCT
T ss_pred EEEeEEEEEeCCEEEEEECCCEEEEEcCCc
Confidence 999 9999999999999987 7776653
No 8
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.96 E-value=3e-09 Score=73.83 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=60.2
Q ss_pred eEEEEEEEEEEeeccC--CceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEE-E
Q 043474 37 SRAEIVGTITSRDHKP--SKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVR-G 113 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~--~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~-G 113 (160)
..+.+.|+|.++.... ..+...+|.|.||+|.+++|.+... ..+++|++|+|+ |
T Consensus 16 ~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~~-----------------------~~~~~G~~V~i~n~ 72 (109)
T 2kbn_A 16 QWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAEL-----------------------PLLEQGESYLLRSV 72 (109)
T ss_dssp CEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGCC-----------------------CCCCTTCEEEEEEE
T ss_pred CcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECcccc-----------------------cccCCCCEEEEEEE
Confidence 5678889999887532 3677899999999999999985432 468899999999 8
Q ss_pred EeceeCCceEEEEEEEEEc
Q 043474 114 RIASYRGDVQITVSDVVIE 132 (160)
Q Consensus 114 ~v~~f~~~~qi~~~~i~~v 132 (160)
.++.|+|..||++.+...+
T Consensus 73 ~v~~~~G~~~L~v~~~~~I 91 (109)
T 2kbn_A 73 VVGEYNDRFQVQVNKNSSI 91 (109)
T ss_dssp EEEEETTEEEEEECSSSEE
T ss_pred EEEEECCEEEEEECCceEE
Confidence 9999999999999875433
No 9
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.91 E-value=9.3e-09 Score=71.56 Aligned_cols=74 Identities=16% Similarity=0.354 Sum_probs=58.8
Q ss_pred eEEEEEEEEEEe-ec-----cC---CceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCc
Q 043474 37 SRAEIVGTITSR-DH-----KP---SKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGL 107 (160)
Q Consensus 37 ~~v~ivG~V~~~-~~-----~~---~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 107 (160)
..+.++|.|.++ .. +. +++..++|.|+||+|++++|.+... ....+++|+
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~---------------------~~~~l~~G~ 75 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIK---------------------LLKKFREGD 75 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGG---------------------GGGTCCTTS
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhh---------------------hhhcCCCCC
Confidence 456788888887 22 22 4789999999999999999976532 225689999
Q ss_pred EEEEEEEe--ceeCCceEEEEEEEEE
Q 043474 108 VARVRGRI--ASYRGDVQITVSDVVI 131 (160)
Q Consensus 108 ~V~V~G~v--~~f~~~~qi~~~~i~~ 131 (160)
+|.+.|.+ ..|+|.+||.+.+...
T Consensus 76 vv~i~g~~v~~~f~g~~qL~~~~~~~ 101 (115)
T 2k50_A 76 VIRIKDVNIRGGFGGRKEAHLMPRST 101 (115)
T ss_dssp EEEEEEEEECCCSSSSCEEEECTTCC
T ss_pred EEEEEeeEEccccCCeEEEEECCCce
Confidence 99999998 6799999999877443
No 10
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.84 E-value=2.6e-08 Score=68.78 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=56.5
Q ss_pred EEEEEEEEEEeecc----CC---ceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEE
Q 043474 38 RAEIVGTITSRDHK----PS---KFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVAR 110 (160)
Q Consensus 38 ~v~ivG~V~~~~~~----~~---~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~ 110 (160)
.+.+.|.|.++... .+ .+..++|.|.||+|.+++|.+. +++|++|+
T Consensus 15 ~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~---------------------------l~~Gdvv~ 67 (106)
T 2k75_A 15 YVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ---------------------------LQDSDVVR 67 (106)
T ss_dssp EEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC---------------------------CCTTEEEE
T ss_pred eEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc---------------------------cCCCCEEE
Confidence 45566666655432 33 3889999999999999999531 77999999
Q ss_pred EE-EEeceeCCceEEEEEE---EEEcCChh
Q 043474 111 VR-GRIASYRGDVQITVSD---VVIEKDPN 136 (160)
Q Consensus 111 V~-G~v~~f~~~~qi~~~~---i~~v~d~n 136 (160)
+. |.++.|+|+.||.+.+ |.+++++.
T Consensus 68 i~ng~v~~~~g~~~L~v~~~~~I~~~~~~~ 97 (106)
T 2k75_A 68 IDNARVAQFNGYLSLSVGDSSRIESVNVNI 97 (106)
T ss_dssp EEEEEEEEETTEEEEEECTTSEEEECCSCC
T ss_pred EEeeEEeEECCEEEEEECCcEEEEECCCCC
Confidence 99 9999999999999876 66666553
No 11
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=98.76 E-value=8.5e-08 Score=65.06 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=57.7
Q ss_pred eEEEEEEEEEEeec-----c-C---CceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCc
Q 043474 37 SRAEIVGTITSRDH-----K-P---SKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGL 107 (160)
Q Consensus 37 ~~v~ivG~V~~~~~-----~-~---~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 107 (160)
..+.+.|+|.++.. + . +.+..++|.|.||+|.+.+|.+... ..+++|+
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~-----------------------~~i~~Gd 68 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELAD-----------------------FEVKKGD 68 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGG-----------------------CCCCTTC
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCccc-----------------------cccCCCC
Confidence 57888999988762 1 1 2577899999999999999987542 1689999
Q ss_pred EEEEEEEeceeCCceEEEEEEEEEc
Q 043474 108 VARVRGRIASYRGDVQITVSDVVIE 132 (160)
Q Consensus 108 ~V~V~G~v~~f~~~~qi~~~~i~~v 132 (160)
+|++.|+++.|.+..+|.+.+-..+
T Consensus 69 vv~i~g~v~~~~~~~el~~g~~~~i 93 (97)
T 3e0e_A 69 IAEVSGYVKQGYSGLEISVDNIGII 93 (97)
T ss_dssp EEEEEEEEEEC--CEEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCeEEEEECCCcEE
Confidence 9999999999999999998876544
No 12
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=98.47 E-value=2.2e-06 Score=58.90 Aligned_cols=75 Identities=31% Similarity=0.356 Sum_probs=59.0
Q ss_pred eEEEEEEEEEEeec------cC---CceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCc
Q 043474 37 SRAEIVGTITSRDH------KP---SKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGL 107 (160)
Q Consensus 37 ~~v~ivG~V~~~~~------~~---~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 107 (160)
..+.|.|+|.++.. +. +....++|.|.||+|.+.+|.+... ..+++|+
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~-----------------------~~l~~Gd 71 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTD-----------------------IDVGRGD 71 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGG-----------------------SCCCTTC
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccc-----------------------cccCCCC
Confidence 67888888888762 11 2456899999999999999987643 1688999
Q ss_pred EEEEEEEecee-CCceEEEEEEEEEcCC
Q 043474 108 VARVRGRIASY-RGDVQITVSDVVIEKD 134 (160)
Q Consensus 108 ~V~V~G~v~~f-~~~~qi~~~~i~~v~d 134 (160)
.|.+.|.++.+ +|.++|.+.+-..+..
T Consensus 72 vv~i~g~vk~~~~g~~eL~~g~~~~i~~ 99 (105)
T 3dm3_A 72 YVRVRGYIREGYYGGLECTANYVEILKK 99 (105)
T ss_dssp EEEEEEEEEECTTSSEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEccCCCEEEEeCCceEEEe
Confidence 99999999997 4589999887665543
No 13
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=97.89 E-value=5.4e-05 Score=63.13 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=63.3
Q ss_pred eEeeEEEEEEEEEEe-eccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEE
Q 043474 34 KLLSRAEIVGTITSR-DHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVR 112 (160)
Q Consensus 34 ~~i~~v~ivG~V~~~-~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~ 112 (160)
.+.+.+.+-|.|.+. ....+..+.|+|+|++|+|+|..|.+...- ......+.+||.|.|.
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayeptk~f------------------r~~vr~L~~GD~V~v~ 343 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQF------------------RNVIRLLRKGDVVEVY 343 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGGTTH------------------HHHHTTCCTTCEEEEE
T ss_pred ccCceEEEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccchHH------------------HHHHhcCCCCCEEEEE
Confidence 467899999999998 555555689999999999999999866431 1233578899999999
Q ss_pred EEeceeCCceEEEEEEEEEcC
Q 043474 113 GRIASYRGDVQITVSDVVIEK 133 (160)
Q Consensus 113 G~v~~f~~~~qi~~~~i~~v~ 133 (160)
|.++. + ||+++++.++.
T Consensus 344 G~v~~--g--tLnvEk~~v~~ 360 (402)
T 3au7_A 344 GSMKK--D--TINLEKIQIVE 360 (402)
T ss_dssp EEEET--T--EEEEEEEEEEE
T ss_pred EeecC--C--EEEEEEEEEcc
Confidence 99887 3 99999999874
No 14
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.64 E-value=0.0003 Score=50.90 Aligned_cols=68 Identities=21% Similarity=0.435 Sum_probs=52.6
Q ss_pred eEEEEEEEEEEeec------c------------CCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccc
Q 043474 37 SRAEIVGTITSRDH------K------------PSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATD 98 (160)
Q Consensus 37 ~~v~ivG~V~~~~~------~------------~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (160)
..+.+.|+|.++.. + .+......|.|.||+|...+|.+..
T Consensus 27 ~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e~~---------------------- 84 (145)
T 1wjj_A 27 TGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQV---------------------- 84 (145)
T ss_dssp CCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTTHH----------------------
T ss_pred CceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecCCc----------------------
Confidence 45666777766541 1 2356789999999999999997532
Q ss_pred cccccccCcEEEEEE-EeceeCCceEEEEEE
Q 043474 99 FAAKIKIGLVARVRG-RIASYRGDVQITVSD 128 (160)
Q Consensus 99 ~~~~~~~G~~V~V~G-~v~~f~~~~qi~~~~ 128 (160)
+.+++|+.|++.+ .++.|+|..+|.+.+
T Consensus 85 --~~l~~Gd~v~i~na~v~~~~G~~~L~vgk 113 (145)
T 1wjj_A 85 --DLMKPGATVILRNSRIDMFKGTMRLGVDK 113 (145)
T ss_dssp --HHTCTTCEEEEEEEEEEEETTEEEEEECT
T ss_pred --CcCCCCCEEEEeccEEEeECCEEEEEECC
Confidence 3478999999987 689999999998875
No 15
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=97.58 E-value=0.001 Score=45.75 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=53.4
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|.+-|.|+..-..+ .|...|+||+|.+-+=.+.-. -..+.+++.|+|.|.|.
T Consensus 38 ~~V~L~G~Iv~~~~~d----~Y~F~D~TG~I~VeId~~~w~----------------------g~~v~p~~~Vri~GevD 91 (109)
T 1nnx_A 38 TWVTLRGNIVERISDD----LYVFKDASGTINVDIDHKRWN----------------------GVTVTPKDTVEIQGEVD 91 (109)
T ss_dssp EEEEEEEEEEEEEETT----EEEEEETTEEEEEECCGGGST----------------------TCCCCTTSCEEEEEEEE
T ss_pred CeEEEEEEEEEEeCCC----eEEEECCCccEEEEEChhhcC----------------------CcccCCCCEEEEEEEEC
Confidence 6788889888876654 688999999999876222111 13577899999999999
Q ss_pred eeCCceEEEEEEEEEc
Q 043474 117 SYRGDVQITVSDVVIE 132 (160)
Q Consensus 117 ~f~~~~qi~~~~i~~v 132 (160)
.--+...|.+.+|+.+
T Consensus 92 kd~~~~eIdV~~i~~~ 107 (109)
T 1nnx_A 92 KDWNSVEIDVKQIRKV 107 (109)
T ss_dssp EETTEEEEEEEEEEEC
T ss_pred CCCCceEEEEEEEEEc
Confidence 7556789999998865
No 16
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=97.39 E-value=0.0011 Score=55.85 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=58.9
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|.|.|+|.++.... +...+.|.|+||.|+|++-.+... .+..+....+..|++|.|.|.+.
T Consensus 17 ~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~~~~----------------~~~~~~~~~l~~~~~V~V~G~v~ 79 (438)
T 3nem_A 17 QKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKKKVD----------------PELFKLIPKLRSEDVVAVEGVVN 79 (438)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTTSC----------------HHHHHHGGGCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCcCC----------------HHHHHHHhcCCCCCEEEEEEEEE
Confidence 5789999999998765 666779999999999987432211 00011235689999999999997
Q ss_pred eeC---CceEEEEEEEEEcC
Q 043474 117 SYR---GDVQITVSDVVIEK 133 (160)
Q Consensus 117 ~f~---~~~qi~~~~i~~v~ 133 (160)
.-. +...|.+.++..+.
T Consensus 80 ~~~~~~~~~el~~~~i~vl~ 99 (438)
T 3nem_A 80 FTPKAKLGFEILPEKIVVLN 99 (438)
T ss_dssp ECTTSTTSEEEEEEEEEEEE
T ss_pred eCCCCCCcEEEEEEEEEEEe
Confidence 654 46788888887654
No 17
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=97.37 E-value=0.0014 Score=56.17 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=59.9
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccc-cccccccCcEEEEEEEe
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATD-FAAKIKIGLVARVRGRI 115 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~V~V~G~v 115 (160)
..|.|.|+|.++.... +..-+.|.|+||.|+|++-.+.... +... ....+..|++|.|.|.|
T Consensus 65 ~~V~v~Gwv~~~R~~g-k~~F~~LrD~sg~iQvv~~~~~~~~----------------~~~~~~~~~l~~g~~V~V~G~v 127 (504)
T 1e1o_A 65 IEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQLYVARDSLPE----------------GVYNDQFKKWDLGDIIGARGTL 127 (504)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTTSST----------------THHHHTGGGCCTTCEEEEEEEE
T ss_pred CEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEECCcCCH----------------HHHHHHHhcCCCCCEEEEEEEE
Confidence 4799999999998776 6688999999999999974332110 0011 23568899999999999
Q ss_pred ceeC-CceEEEEEEEEEcC
Q 043474 116 ASYR-GDVQITVSDVVIEK 133 (160)
Q Consensus 116 ~~f~-~~~qi~~~~i~~v~ 133 (160)
..-. |...|.+..+..+.
T Consensus 128 ~~~~~ge~ei~~~~i~vl~ 146 (504)
T 1e1o_A 128 FKTQTGELSIHCTELRLLT 146 (504)
T ss_dssp EECTTCCEEEEEEEEEEEE
T ss_pred EecCCceEEEEEEEEEEec
Confidence 7543 67889999887664
No 18
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=97.32 E-value=0.0015 Score=54.94 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=58.9
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|.|.|+|.++.... +..-+.|.|+||.|+|++-.+. . . .+....+..|++|.|.|.|.
T Consensus 17 ~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~-~-----------------~-~~~~~~l~~~~~v~v~G~v~ 76 (429)
T 1wyd_A 17 KEVIWAGWVHLLRDLG-GKKFIILRDKTGLGQVVVDKNS-S-----------------A-FGISQELTQESVIQVRGIVK 76 (429)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECTTS-T-----------------T-HHHHTTCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh-H-----------------H-HHHHHhCCCCCEEEEEEEEE
Confidence 4699999999998775 6678999999999999974321 1 0 01225688999999999998
Q ss_pred eeCC---ceEEEEEEEEEcC
Q 043474 117 SYRG---DVQITVSDVVIEK 133 (160)
Q Consensus 117 ~f~~---~~qi~~~~i~~v~ 133 (160)
.-.. ...|.+.++..+.
T Consensus 77 ~~~~~~~~~el~~~~~~vl~ 96 (429)
T 1wyd_A 77 ADKRAPRGIELHAEEITLLS 96 (429)
T ss_dssp ECSSSGGGEEEEEEEEEEEE
T ss_pred ecCCCCccEEEEEeEEEEec
Confidence 7653 5788888887654
No 19
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=97.30 E-value=0.002 Score=54.59 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=58.1
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|.|.|+|.++...+++..-+.|.|+||.|+|++-.+... . ......+..|+.|.|.|.|.
T Consensus 31 ~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~-----------------~-~~~~~~l~~g~~V~V~G~v~ 92 (456)
T 3m4p_A 31 KLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELC-----------------E-PEKVKLLTRECSLEITGRLN 92 (456)
T ss_dssp SEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTT-----------------C-HHHHTTCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccch-----------------h-hHHhhcCCCccEEEEEeEEE
Confidence 57899999999887653566789999999999987431111 0 00123688999999999996
Q ss_pred eeC-----------CceEEEEEEEEEcCC
Q 043474 117 SYR-----------GDVQITVSDVVIEKD 134 (160)
Q Consensus 117 ~f~-----------~~~qi~~~~i~~v~d 134 (160)
.-. |...|.+.++..+..
T Consensus 93 ~~~~~~~~~~~~t~g~~El~~~~i~vl~~ 121 (456)
T 3m4p_A 93 AYAGKNHPPEIADILNLEMQVTEWKVIGE 121 (456)
T ss_dssp CCCSSSCCCSCTTBCSSEEEEEEEEEEEC
T ss_pred ecCCcccCcccCCCCcEEEEEeEEEEEec
Confidence 422 557899999886643
No 20
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=97.20 E-value=0.0017 Score=55.45 Aligned_cols=83 Identities=8% Similarity=0.160 Sum_probs=59.4
Q ss_pred eEEEEEEEEEEeeccCCce-EEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEe
Q 043474 37 SRAEIVGTITSRDHKPSKF-IKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRI 115 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~-~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v 115 (160)
..|.|.|+|.++.... +. +-+.|.|+||.|+|++-.+..... .....+....+..|++|.|.|.|
T Consensus 37 ~~V~v~GwV~~~R~~g-~~l~Fi~LrD~~g~iQvv~~~~~~~~~-------------~~~~~~~~~~l~~e~~V~V~G~v 102 (487)
T 1eov_A 37 KEVLFRARVHNTRQQG-ATLAFLTLRQQASLIQGLVKANKEGTI-------------SKNMVKWAGSLNLESIVLVRGIV 102 (487)
T ss_dssp CEEEEEEEEEEEEECS-SSEEEEEEEETTEEEEEEEECCSSSSS-------------CHHHHHHHTTCCTTCEEEEEEEE
T ss_pred CEEEEEEEEEEeeccC-CccEEEEEEECCccEEEEEeccccccc-------------cHHHHHHHhcCCCCCEEEEEEEE
Confidence 4699999999998776 54 689999999999999743211000 00001123568999999999999
Q ss_pred ceeC--------CceEEEEEEEEEcC
Q 043474 116 ASYR--------GDVQITVSDVVIEK 133 (160)
Q Consensus 116 ~~f~--------~~~qi~~~~i~~v~ 133 (160)
..-. |...|.+..+..+.
T Consensus 103 ~~~~~~~~~~~~g~~El~~~~i~vl~ 128 (487)
T 1eov_A 103 KKVDEPIKSATVQNLEIHITKIYTIS 128 (487)
T ss_dssp EECSSCCTTSSEEEEEEEEEEEEEEE
T ss_pred EeCCCCCcCCCCCcEEEEEEEEEEee
Confidence 8765 45788888887665
No 21
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.18 E-value=0.0013 Score=56.67 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=58.9
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|.|.|+|.++.... +...+.|.|+||.|+|++-.+... .+..+....+..|++|.|.|.|.
T Consensus 87 ~~V~v~GwV~~~R~~G-k~~Fi~LrD~sg~iQvv~~~~~~~----------------~~~~~~~~~l~~gd~V~V~G~v~ 149 (529)
T 4ex5_A 87 LEVAIAGRMMLKRVMG-KASFATVQDGSGQIQFFVTPADVG----------------AETYDAFKKWDLGDIVAARGVLF 149 (529)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEECSSCEEEEEECHHHHC----------------HHHHHHHHTCCTTCEEEEEEEEE
T ss_pred cEEEEEEEEEeeecCC-CeEEEEEEeCCeeEEEEEECCcCC----------------HHHHHHHhcCCCCCEEEEEEEEE
Confidence 5799999999988765 667789999999999987432111 00011234689999999999997
Q ss_pred eeC-CceEEEEEEEEEcC
Q 043474 117 SYR-GDVQITVSDVVIEK 133 (160)
Q Consensus 117 ~f~-~~~qi~~~~i~~v~ 133 (160)
.-. |...|.+..+..+.
T Consensus 150 ~t~~gelel~~~~i~vLs 167 (529)
T 4ex5_A 150 RTNKGELSVKCTQLRLLA 167 (529)
T ss_dssp ECTTSCEEEEEEEEEEEE
T ss_pred EcCCCcEEEEEEEEEEEe
Confidence 544 67889999887654
No 22
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=97.18 E-value=0.0013 Score=55.42 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=59.5
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|.|.|+|.++.... +..-+.|.|+||.|+|++-.+... ....+....+..|++|.|.|.|.
T Consensus 17 ~~V~v~G~v~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~~~----------------~~~~~~~~~l~~~~~v~v~G~v~ 79 (434)
T 1x54_A 17 KKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQAVVAKNVVG----------------EETFEKAKKLGRESSVIVEGIVK 79 (434)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECHHHHC----------------HHHHHHHHTCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEECCcCC----------------HHHHHHHhcCCCCCEEEEEEEEE
Confidence 4699999999998775 667899999999999997422110 00011225689999999999998
Q ss_pred eeCC---ceEEEEEEEEEcC
Q 043474 117 SYRG---DVQITVSDVVIEK 133 (160)
Q Consensus 117 ~f~~---~~qi~~~~i~~v~ 133 (160)
.-.. ...|.+.++..+.
T Consensus 80 ~~~~~~~~~el~~~~~~vl~ 99 (434)
T 1x54_A 80 ADERAPGGAEVHVEKLEVIQ 99 (434)
T ss_dssp ECTTSGGGEEEEEEEEEEEE
T ss_pred ecCCCCccEEEEEeEEEEee
Confidence 7653 5789998887665
No 23
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=97.16 E-value=0.0011 Score=56.72 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=59.6
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|.|.|+|.++.... +..-+.|.|+||.|+|++-.+... .+..+....+..|++|.|.|.|.
T Consensus 57 ~~V~v~Gwv~~~R~~g-k~~F~~LrD~sg~iQvv~~~~~~~----------------~~~~~~~~~l~~g~~v~V~G~v~ 119 (493)
T 3a74_A 57 IEVAVAGRIMTKRGMG-KAGFAHIQDVTGQIQIYVRQDDVG----------------EQQYELFKISDLGDIVGVRGTMF 119 (493)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEEHHHHH----------------HHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCC-CcEEEEEEECCEeEEEEEECCcCC----------------HHHHHHHhcCCCCCEEEEEEEEE
Confidence 4799999999998776 668899999999999997432111 00011224688999999999997
Q ss_pred eeC-CceEEEEEEEEEcC
Q 043474 117 SYR-GDVQITVSDVVIEK 133 (160)
Q Consensus 117 ~f~-~~~qi~~~~i~~v~ 133 (160)
.-. |...|.+.++..+.
T Consensus 120 ~~~~ge~ei~~~~i~vl~ 137 (493)
T 3a74_A 120 KTKVGELSIKVSSYEFLT 137 (493)
T ss_dssp ECTTCCEEEEEEEEEEEE
T ss_pred eCCCCcEEEEEEEEEEcc
Confidence 643 67889999887665
No 24
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.14 E-value=0.0019 Score=56.42 Aligned_cols=78 Identities=17% Similarity=0.306 Sum_probs=59.4
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|.|.|+|.++.... +.+-+.|.|+||.|+|++-.+. . ...+....+..|++|.|.|.|.
T Consensus 16 ~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~-~-----------------~~~~~~~~l~~e~~V~V~G~v~ 76 (585)
T 1c0a_A 16 QQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDR-A-----------------DALKLASELRNEFCIQVTGTVR 76 (585)
T ss_dssp CEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGGG-H-----------------HHHHHHTTCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEeCCc-h-----------------HHHHHHhcCCCCCEEEEEeEEE
Confidence 4699999999998776 6688999999999999973211 1 0011235688999999999997
Q ss_pred ee----------CCceEEEEEEEEEcC
Q 043474 117 SY----------RGDVQITVSDVVIEK 133 (160)
Q Consensus 117 ~f----------~~~~qi~~~~i~~v~ 133 (160)
.- .|...|.+.++..+.
T Consensus 77 ~~~~~~~n~~~~~geiEl~~~~i~vl~ 103 (585)
T 1c0a_A 77 ARDEKNINRDMATGEIEVLASSLTIIN 103 (585)
T ss_dssp ECCTTTCCTTSTTTTEEEEEEEEEEEE
T ss_pred ccCcccccccCCCccEEEEEeEEEEEe
Confidence 65 366889999987665
No 25
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.14 E-value=0.0027 Score=55.39 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=59.0
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|.|.|+|.++.... +.+-+.|.|+||.|+|++-.+... .+....+..|++|.|.|.|.
T Consensus 17 ~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~~~-------------------~~~~~~l~~e~~V~V~G~v~ 76 (580)
T 1l0w_A 17 EEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPASPA-------------------YATAERVRPEWVVRAKGLVR 76 (580)
T ss_dssp CEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTSTT-------------------HHHHTTCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCChhH-------------------HHHHhcCCCCcEEEEEEEEE
Confidence 4699999999998776 667899999999999997322100 01235688999999999998
Q ss_pred ee--------CCceEEEEEEEEEcC
Q 043474 117 SY--------RGDVQITVSDVVIEK 133 (160)
Q Consensus 117 ~f--------~~~~qi~~~~i~~v~ 133 (160)
.- .|...|.+.++..+.
T Consensus 77 ~~~~~~~~~~~ge~Ei~~~~i~vl~ 101 (580)
T 1l0w_A 77 LRPEPNPRLATGRVEVELSALEVLA 101 (580)
T ss_dssp ECSSCCTTSTTTTEEEEEEEEEEEE
T ss_pred cCCCcCccCCCccEEEEEeEEEEec
Confidence 74 356889998887654
No 26
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.11 E-value=0.0031 Score=54.56 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=60.8
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|.|.|+|.++.... +...+.|.|+||.|+|++-.+...+ .+. ......+..|++|.|.|.|.
T Consensus 63 ~~V~v~Gwv~~~R~~g-kl~Fi~LrD~~g~iQ~v~~~~~~~~--------------~~~-~~~~~~l~~es~V~V~G~v~ 126 (548)
T 3i7f_A 63 KTVTIRARVQAVRGKG-NMVFLFLRKGIYTCQALVMKSETIS--------------KEF-VQFCQKISAESICDITGIVK 126 (548)
T ss_dssp CEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEECSSSSC--------------HHH-HHHHHTCCTTEEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEECCCccC--------------HHH-HHHHhCCCCCCEEEEEEEEE
Confidence 6789999999998776 7677889999999999985422110 000 11235689999999999998
Q ss_pred eeC--------CceEEEEEEEEEcCC
Q 043474 117 SYR--------GDVQITVSDVVIEKD 134 (160)
Q Consensus 117 ~f~--------~~~qi~~~~i~~v~d 134 (160)
.-. +...|.+.++..+..
T Consensus 127 ~~~~~~~~~~~~~~El~~~~i~vls~ 152 (548)
T 3i7f_A 127 AVEKPIEKATQQDVEIHVTSIAVVSL 152 (548)
T ss_dssp ECSSCCTTSSSCSEEEEEEEEEEEEC
T ss_pred eCCcccccCCCCcEEEEEeEEEEEec
Confidence 743 567899999886643
No 27
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=97.11 E-value=0.0041 Score=52.35 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=58.2
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|.|.|+|.++...+++..-+.|.|+||.|+|++- +.... . ... ..+..|++|.|.|.|.
T Consensus 12 ~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~-~~~~~----------------~-~~~-~~l~~~~~v~v~G~v~ 72 (435)
T 2xgt_A 12 ERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLM-DKLCQ----------------T-YDA-LTVNTECTVEIYGAIK 72 (435)
T ss_dssp SEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEE-GGGGS----------------S-HHH-HHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEEecccCCCcEEEEEEECCceEEEEEC-Ccchh----------------H-HHH-hcCCCCCEEEEEEEEE
Confidence 469999999999877535678999999999999974 21110 0 011 2588999999999997
Q ss_pred eeC------CceEEEEEEEEEcC
Q 043474 117 SYR------GDVQITVSDVVIEK 133 (160)
Q Consensus 117 ~f~------~~~qi~~~~i~~v~ 133 (160)
.-. |...|.+..+..+.
T Consensus 73 ~~~~~~~~~g~~El~~~~~~vl~ 95 (435)
T 2xgt_A 73 EVPEGKEAPNGHELIADFWKIIG 95 (435)
T ss_dssp ECC------TTEEEEEEEEEEEE
T ss_pred ecCCCcCCCCcEEEEEEEEEEee
Confidence 632 56789999988776
No 28
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=97.06 E-value=0.0052 Score=51.55 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=56.7
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccc-cCcEEEEEEEe
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIK-IGLVARVRGRI 115 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~V~V~G~v 115 (160)
..|.|.|+|.++.... +..-+.|.|+||.|+|++-. ..+. .|++|.|.|.|
T Consensus 14 ~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~---------------------------~~l~~~~~~v~v~G~v 65 (422)
T 1n9w_A 14 QEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGG---------------------------LKLPLPESALRVRGLV 65 (422)
T ss_dssp SEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEES---------------------------CCCCCTTCEEEEEEEE
T ss_pred CEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEEc---------------------------cccCCCCCEEEEEEEE
Confidence 4699999999998876 67789999999999998632 2477 89999999999
Q ss_pred ceeCC---ceEEEEEEEEEcC
Q 043474 116 ASYRG---DVQITVSDVVIEK 133 (160)
Q Consensus 116 ~~f~~---~~qi~~~~i~~v~ 133 (160)
..-.. ...|.+.++..+.
T Consensus 66 ~~~~~~~~~~el~~~~~~vl~ 86 (422)
T 1n9w_A 66 VENAKAPGGLEVQAKEVEVLS 86 (422)
T ss_dssp EECTTSTTSEEEEEEEEEEEE
T ss_pred EecCCCCccEEEEEeEEEEec
Confidence 87653 6789998888665
No 29
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=97.05 E-value=0.0029 Score=58.44 Aligned_cols=82 Identities=15% Similarity=0.277 Sum_probs=63.3
Q ss_pred EeeEEEEEEEEEEeeccC---C-ceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEE
Q 043474 35 LLSRAEIVGTITSRDHKP---S-KFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVAR 110 (160)
Q Consensus 35 ~i~~v~ivG~V~~~~~~~---~-~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~ 110 (160)
+..+|.|-|.|-+++.++ + ..+.|.|.|-|++|.|+.|.+..+. .+....++.|+.|+
T Consensus 16 ~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~~~~------------------~~~~~~~~~g~~~~ 77 (1041)
T 3f2b_A 16 EERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRDKED------------------AELMSGVKKGMWVK 77 (1041)
T ss_dssp CEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSSHHH------------------HHHHHTCCTTCEEE
T ss_pred ccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecccch------------------HHHHhcCCCCCEEE
Confidence 567899999999887642 3 4579999999999999999765431 12345799999999
Q ss_pred EEEEec--eeCCceEEEEEEEEEcCC
Q 043474 111 VRGRIA--SYRGDVQITVSDVVIEKD 134 (160)
Q Consensus 111 V~G~v~--~f~~~~qi~~~~i~~v~d 134 (160)
|+|+++ .|.+...+.+..|..+..
T Consensus 78 ~~g~~~~d~~~~~~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 78 VRGSVQNDTFVRDLVIIANDLNEIAA 103 (1041)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEECC
T ss_pred EEEEEEeccCCcceEEEeeeeEEecc
Confidence 999987 466777888888876653
No 30
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=96.98 E-value=0.001 Score=62.36 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=45.2
Q ss_pred eEEEEEEEEEEeeccCC----ceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEE
Q 043474 37 SRAEIVGTITSRDHKPS----KFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVR 112 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~----~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~ 112 (160)
..+.+.|.|++++...+ ++..++|+|.||.+++++|.+.-. +....+..+..|.|.
T Consensus 1043 ~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~~--------------------~~~~~l~~~~~~~v~ 1102 (1220)
T 2hpi_A 1043 PKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYE--------------------GVSPKLKEDIPLLVL 1102 (1220)
T ss_dssp CEEEEEEEECCC------------CEEEEETTEEEEEC---------------------------------CTTCEEEEE
T ss_pred CeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHHH--------------------HHHHHhccCCEEEEE
Confidence 45779999999885432 467899999999999999977653 134568899999999
Q ss_pred EEeceeCCceEEEEEEEEEcC
Q 043474 113 GRIASYRGDVQITVSDVVIEK 133 (160)
Q Consensus 113 G~v~~f~~~~qi~~~~i~~v~ 133 (160)
|+++.-. ..+|.+.++.+++
T Consensus 1103 G~v~~~~-~~~l~~~~i~~l~ 1122 (1220)
T 2hpi_A 1103 AEVEKGE-ELRVLAQAVWTLE 1122 (1220)
T ss_dssp EEEC------CEEEEEEEEHH
T ss_pred EEEEECC-CcEEEEeeeecHH
Confidence 9998644 5789999988664
No 31
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=96.96 E-value=0.0042 Score=53.50 Aligned_cols=83 Identities=13% Similarity=0.205 Sum_probs=59.1
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|.|.|+|.++.....+..-+.|.|+||.|+|++-.+...+ .+........+..|++|.|.|.+.
T Consensus 56 ~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~--------------~~~~~~~~~~l~~gd~V~V~G~v~ 121 (521)
T 3bju_A 56 ITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKS--------------EEEFIHINNKLRRGDIIGVQGNPG 121 (521)
T ss_dssp CCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSC--------------HHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred cEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCC--------------HHHHHHHHhcCCCCCEEEEEEEEE
Confidence 469999999998876535577899999999999985432100 000000123588999999999987
Q ss_pred ee-CCceEEEEEEEEEcC
Q 043474 117 SY-RGDVQITVSDVVIEK 133 (160)
Q Consensus 117 ~f-~~~~qi~~~~i~~v~ 133 (160)
.- .|...|.+.++..+.
T Consensus 122 ~t~~ge~ei~~~~i~~l~ 139 (521)
T 3bju_A 122 KTKKGELSIIPYEITLLS 139 (521)
T ss_dssp ECTTCCEEEEEEEEEEEE
T ss_pred ecCCCCEEEEEeEEEEee
Confidence 54 367889998887664
No 32
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=96.95 E-value=0.011 Score=40.51 Aligned_cols=75 Identities=16% Similarity=0.401 Sum_probs=49.7
Q ss_pred eEEEEEEEEEEee-----ccCCceEEEEEe-----CCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccC
Q 043474 37 SRAEIVGTITSRD-----HKPSKFIKFTVD-----DGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIG 106 (160)
Q Consensus 37 ~~v~ivG~V~~~~-----~~~~~~~~~~Id-----DgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 106 (160)
.+|.++|.+..-- .....+..|+|. |.+--|+|++|....+. .....|
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~----------------------~~~~kG 69 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEG----------------------MNLEVG 69 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTT----------------------CCCCTT
T ss_pred CEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhH----------------------HhhcCC
Confidence 6788888887521 122356666665 55667999999877641 124589
Q ss_pred cEEEEEEEeceeC------Cc----eEEEEEEEEEcC
Q 043474 107 LVARVRGRIASYR------GD----VQITVSDVVIEK 133 (160)
Q Consensus 107 ~~V~V~G~v~~f~------~~----~qi~~~~i~~v~ 133 (160)
+.|.|.|++++|+ |+ ..+.+..|.-++
T Consensus 70 ~~v~v~G~lrsy~~~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 70 TRVKIEGQLRSYNRKSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp CEEEEEEEEEEEECC--------EEEEEEEEEEEEEC
T ss_pred CEEEEEEEEEecceEECCCCCEEEEEEEEEEEEEEcc
Confidence 9999999998864 22 356677666554
No 33
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=96.50 E-value=0.057 Score=37.58 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=53.0
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCc-eEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEe
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTG-CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRI 115 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG-~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v 115 (160)
+.|++||+|.++.... + .++|+++-| .+.+.+-.+.+ . .++.+|.|.|++
T Consensus 23 k~VrivGkV~~~~~~g-~--~~~l~s~Dg~~Vtv~l~~p~~------------------------~--~l~~~vEViG~V 73 (121)
T 3kdf_A 23 KPVCFVGRLEKIHPTG-K--MFILSDGEGKNGTIELMEPLD------------------------E--EISGIVEVVGRV 73 (121)
T ss_dssp CEEEEEEEEEEECTTS-S--EEEEECTTSCEEEEECSSCCS------------------------S--CCCSEEEEEEEE
T ss_pred CeEEEEEEEEEEcCCC-C--EEEEEeCCCCEEEEEeCCCCC------------------------c--ccCcEEEEEEEE
Confidence 8899999999986544 3 678888776 58887522111 1 235699999999
Q ss_pred ceeCCceEEEEEEEEEcCCh--hHHHHHHHHHHHH
Q 043474 116 ASYRGDVQITVSDVVIEKDP--NMEVLHWLDCLRL 148 (160)
Q Consensus 116 ~~f~~~~qi~~~~i~~v~d~--n~~~~h~le~~~~ 148 (160)
.. ...|.+.......+. +.++.-+-+++++
T Consensus 74 ~~---~~tI~~~~~~~fg~~~~~fD~~~yn~lv~l 105 (121)
T 3kdf_A 74 TA---KATILCTSYVQFKEDSHPFDLGLYNEAVKI 105 (121)
T ss_dssp CT---TSCEEEEEEEECCCSSSCCCHHHHHHHHHH
T ss_pred CC---CCeEEEEEEEecCCCCcccCHHHHHHHHHH
Confidence 84 457888887777643 1333444445544
No 34
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=96.37 E-value=0.15 Score=36.44 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=53.6
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCc-eEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEe
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTG-CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRI 115 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG-~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v 115 (160)
+.|+|||+|.+..... + .++|..+.| .|.|.+- ... .-..+.+|.|.|+|
T Consensus 44 k~VriVGkV~~~~~~G-~--~~~l~s~Dg~~VtV~l~--~pL------------------------~~~~~~~VEViG~V 94 (142)
T 2pi2_E 44 KPVCFVGRLEKIHPTG-K--MFILSDGEGKNGTIELM--EPL------------------------DEEISGIVEVVGRV 94 (142)
T ss_dssp CEEEEEEEEEEECTTS-S--EEEEECTTSCEEEEECS--SCC------------------------SSCCCSEEEEEEEE
T ss_pred CEEEEEEEEeEEcCCC-C--EEEEEeCCCcEEEEEeC--CCC------------------------CccCCCEEEEEEEE
Confidence 8999999999985544 3 678888766 5888752 110 01247899999999
Q ss_pred ceeCCceEEEEEEEEEcCCh--hHHHHHHHHHHHH
Q 043474 116 ASYRGDVQITVSDVVIEKDP--NMEVLHWLDCLRL 148 (160)
Q Consensus 116 ~~f~~~~qi~~~~i~~v~d~--n~~~~h~le~~~~ 148 (160)
.. ...|.+.......+. +.++.=+-+++.+
T Consensus 95 ~~---~~tI~~~~~~~fGd~~~~fD~~~yn~lv~l 126 (142)
T 2pi2_E 95 TA---KATILCTSYVQFKEDSHPFDLGLYNEAVKI 126 (142)
T ss_dssp CT---TSCEEEEEEEECCCSSSCCCHHHHHHHHHH
T ss_pred CC---CCcEEEEEEEecCCCccccCHHHHHHHHHH
Confidence 66 456778887777754 2444444455554
No 35
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0039 Score=42.90 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=33.7
Q ss_pred CceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEE
Q 043474 53 SKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGR 114 (160)
Q Consensus 53 ~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~ 114 (160)
++.+.+.|-|.||.|.|.+|.+... ...+.++.|+.+.|.|-
T Consensus 39 g~~~~~~L~De~G~I~at~~~~~~~--------------------~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 39 GKLFNVNFLDTSGEIRATAFNDFAT--------------------KFNEILQEGKVYYVSKA 80 (114)
T ss_dssp EEEEEEEEEETTEEEEEEECHHHHH--------------------HHHHHSCSSSEEEEESC
T ss_pred ceEEEEEEECCCCeEEEEECHHHHH--------------------HHHhhcccCcEEEECCc
Confidence 4678999999999999999986532 23467899999988864
No 36
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=96.05 E-value=0.081 Score=35.55 Aligned_cols=77 Identities=16% Similarity=0.310 Sum_probs=49.4
Q ss_pred eEEEEEEEEEEeec-----cCCceEEEEEe-----CCCce-------EEEEEeecCccCCCCCCCCCCcccccccccccc
Q 043474 37 SRAEIVGTITSRDH-----KPSKFIKFTVD-----DGTGC-------VPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDF 99 (160)
Q Consensus 37 ~~v~ivG~V~~~~~-----~~~~~~~~~Id-----DgTG~-------I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (160)
.+|.++|.+..--+ ...+...|+|. +.|+- |+|+.|.+..+. .
T Consensus 3 N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~--------------------~ 62 (104)
T 1txy_A 3 NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQA--------------------I 62 (104)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHH--------------------H
T ss_pred EEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHH--------------------H
Confidence 56778888776321 11255666663 34567 999999775431 2
Q ss_pred ccccccCcEEEEEEEeceeC---C--ceEEEEEEEEEcC
Q 043474 100 AAKIKIGLVARVRGRIASYR---G--DVQITVSDVVIEK 133 (160)
Q Consensus 100 ~~~~~~G~~V~V~G~v~~f~---~--~~qi~~~~i~~v~ 133 (160)
...++.|+.|.|.|+++.-. | ...|.+..|..++
T Consensus 63 ~~~l~KG~~V~V~G~L~~~~~~~G~~r~~v~~~~i~~l~ 101 (104)
T 1txy_A 63 THSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELID 101 (104)
T ss_dssp HTTCCTTCEEEEEEEEEC--------CCEEEEEEEEEC-
T ss_pred HhhCCCCCEEEEEEEEEeccCCCCCEEEEEEEEEEEECc
Confidence 35689999999999998642 1 1347777777654
No 37
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=95.75 E-value=0.076 Score=36.20 Aligned_cols=76 Identities=13% Similarity=0.212 Sum_probs=47.8
Q ss_pred eeEEEEEEEEEEee-----ccC-CceEEEEEe-------CCCceEEEEEeecCccCCCCCCCCCCccccccccccccccc
Q 043474 36 LSRAEIVGTITSRD-----HKP-SKFIKFTVD-------DGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAK 102 (160)
Q Consensus 36 i~~v~ivG~V~~~~-----~~~-~~~~~~~Id-------DgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (160)
...|.++|.+..-- ..+ .....|+|. |.|--++|++|.+..+. ....
T Consensus 11 ~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~--------------------~~~y 70 (108)
T 3koj_A 11 MNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQE--------------------LQDR 70 (108)
T ss_dssp CEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHH--------------------HHHH
T ss_pred cceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHH--------------------HHHh
Confidence 46778888877522 112 245566553 45566999999875531 2356
Q ss_pred cccCcEEEEEEEece--eCCc-------eEEEEEEEEE
Q 043474 103 IKIGLVARVRGRIAS--YRGD-------VQITVSDVVI 131 (160)
Q Consensus 103 ~~~G~~V~V~G~v~~--f~~~-------~qi~~~~i~~ 131 (160)
++.|+.|.|.|+++. |.++ -+|.+.+|.|
T Consensus 71 l~KG~~V~VeGrL~~r~y~~kdG~kr~~tEVva~~i~P 108 (108)
T 3koj_A 71 CRLNDEVVLEGRLRINSLLKPDGNREKQTELTVTRVHH 108 (108)
T ss_dssp CCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEC
T ss_pred CCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEC
Confidence 899999999999975 4331 3567776654
No 38
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=95.73 E-value=0.25 Score=36.93 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=52.9
Q ss_pred eEEEEEEEEEEeec-----cCC-ce-EEEEEeCCC----c-eEEEEEeecCccCCCCCCCCCCcccccccccccccccc-
Q 043474 37 SRAEIVGTITSRDH-----KPS-KF-IKFTVDDGT----G-CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKI- 103 (160)
Q Consensus 37 ~~v~ivG~V~~~~~-----~~~-~~-~~~~IdDgT----G-~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 103 (160)
..|.++|.|+.... +++ .| ++|+|-|.| + .|.|.++.+..+. .+.+
T Consensus 43 ~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~---------------------LP~V~ 101 (187)
T 1qzg_A 43 TIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGND---------------------LPVIK 101 (187)
T ss_dssp EEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSC---------------------SCCCC
T ss_pred CEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhh---------------------CCCCC
Confidence 67888999988662 333 34 799999987 3 3999999876541 2344
Q ss_pred ccCcEEEEEEE-eceeCCceEEEEEE
Q 043474 104 KIGLVARVRGR-IASYRGDVQITVSD 128 (160)
Q Consensus 104 ~~G~~V~V~G~-v~~f~~~~qi~~~~ 128 (160)
..||+|++..- ++.|+|+.|....+
T Consensus 102 ~~GDIIlL~rvkiq~~~g~~~~v~~~ 127 (187)
T 1qzg_A 102 QVGQPLLLHQITLRSYRDRTQGLSKD 127 (187)
T ss_dssp STTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEEEEEEEECCeEEEEEcC
Confidence 78999999864 78899999986555
No 39
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=95.65 E-value=0.079 Score=36.45 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=45.6
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCc-eEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEe
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTG-CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRI 115 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG-~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v 115 (160)
+.|+|+|+|.+... + .++|+.++| .|.|++- .+ ..+..+.+|.|.|++
T Consensus 19 ~~VrivGkV~~~~g---~--~~~l~s~d~~~Vtv~l~--~~------------------------~~~~~~~~vEViG~V 67 (114)
T 4gop_A 19 QTVRIVGKVHKVTG---N--TLLMQTSDLGNVEIAMT--PD------------------------SDVSSSTFVEVTGKV 67 (114)
T ss_dssp SEEEEEEEEEEEET---T--EEEEECTTSCEEEEECC--SS------------------------CCGGGCSEEEEEEEE
T ss_pred CeEEEEEEEeeeCC---C--EEEEEeCCCCEEEEEeC--CC------------------------CCcccCcEEEEEEEE
Confidence 78999999999875 2 678887765 5777652 11 234578999999999
Q ss_pred ceeCCc---eEEEEEEEEEcCC
Q 043474 116 ASYRGD---VQITVSDVVIEKD 134 (160)
Q Consensus 116 ~~f~~~---~qi~~~~i~~v~d 134 (160)
..-.+. ..|.+.......+
T Consensus 68 ~~~~~~~~~~~I~~~~~~~~g~ 89 (114)
T 4gop_A 68 SDAGSSFQANQIREFTTVDCGH 89 (114)
T ss_dssp CTTSSEEEEEEEEECSCCC---
T ss_pred cCCCCcccCCeEEEEEEEeCCC
Confidence 864332 5677766555543
No 40
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=95.52 E-value=0.23 Score=39.26 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=51.5
Q ss_pred eEEEEEEEEEEeec----cCC-ceEEEEEeCCCc-eEEEEEeecCccCCCCCCCCCCcccccccccccccccc-ccCcEE
Q 043474 37 SRAEIVGTITSRDH----KPS-KFIKFTVDDGTG-CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKI-KIGLVA 109 (160)
Q Consensus 37 ~~v~ivG~V~~~~~----~~~-~~~~~~IdDgTG-~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~V 109 (160)
..+.++|+|+.... +++ -.++|+|-|.|- .|.|.+|.+..+ ....+ +.||+|
T Consensus 16 ~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~gl~v~iF~~~~~---------------------~LP~v~~~GDII 74 (294)
T 1xjv_A 16 TIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYE---------------------ALPIIYKNGDIV 74 (294)
T ss_dssp EEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSGG---------------------GSCCCCSTTCEE
T ss_pred CeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCCCEEEEEECCChH---------------------HCCCCCCCCCEE
Confidence 56788899988763 333 447999999663 299999987543 12344 899999
Q ss_pred EEEE-EeceeCCceEEEEEE
Q 043474 110 RVRG-RIASYRGDVQITVSD 128 (160)
Q Consensus 110 ~V~G-~v~~f~~~~qi~~~~ 128 (160)
++.. +++.|+++.|+....
T Consensus 75 ~l~~vki~~~~g~~~~v~~~ 94 (294)
T 1xjv_A 75 RFHRLKIQVYKKETQGITSS 94 (294)
T ss_dssp EEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEECCeEEEEccC
Confidence 9995 478999998875543
No 41
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=95.50 E-value=0.026 Score=49.46 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=53.8
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEec
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIA 116 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~ 116 (160)
..|+|.|+|..+.. .. .+.|.|+||.|+|++-.+... .+..+....+..|+.|.|.|.|.
T Consensus 25 ~~V~l~GwV~~~R~--~~--Fi~LrD~~g~iQvv~~~~~~~----------------~~~~~~~~~l~~e~~V~V~G~v~ 84 (617)
T 4ah6_A 25 QEVTLCGWIQYRRQ--NT--FLVLRDFDGLVQVIIPQDESA----------------ASVKKILCEAPVESVVQVSGTVI 84 (617)
T ss_dssp CEEEEEEEECCCCT--TT--EEEEECSSCEEEEECCCSSSS----------------HHHHHHHHHCCSSCEEEEEEEEE
T ss_pred CEEEEEEEeeeecC--eE--EEEEEeCCcCEEEEEeCCcCc----------------HHHHHHHhcCCCCCEEEEEEEEE
Confidence 47999999998653 24 577899999999987322110 00011235688999999999997
Q ss_pred ee----------CCceEEEEEEEEEcC
Q 043474 117 SY----------RGDVQITVSDVVIEK 133 (160)
Q Consensus 117 ~f----------~~~~qi~~~~i~~v~ 133 (160)
.- .|...|.+..+..+.
T Consensus 85 ~~~~~~~n~~~~tgeiEl~~~~i~vL~ 111 (617)
T 4ah6_A 85 SRPAGQENPKMPTGEIEIKVKTAELLN 111 (617)
T ss_dssp ECSTTCCCTTSTTTTEEEEEEEEEEEE
T ss_pred eCCccccCccCCCCcEEEEEeEEEEee
Confidence 52 256889998888653
No 42
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=95.48 E-value=0.13 Score=35.37 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=35.9
Q ss_pred EEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEeceeC--C-ceEEEEEEEEEcCC
Q 043474 67 VPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIASYR--G-DVQITVSDVVIEKD 134 (160)
Q Consensus 67 I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~~f~--~-~~qi~~~~i~~v~d 134 (160)
|+|++|.+..+ ....++.|..|.|.|+++.-. + +..|.+..|..++.
T Consensus 49 i~vv~~Gk~AE---------------------~~~~l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~ 98 (115)
T 3fhw_A 49 ISAVALGDLAL---------------------LLADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAG 98 (115)
T ss_dssp EEEEEETHHHH---------------------HHTTCCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCC
T ss_pred EEEEEEhHHHH---------------------hhhccCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCC
Confidence 88999976543 125689999999999998632 2 45799999998754
No 43
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=95.09 E-value=0.023 Score=43.57 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=50.5
Q ss_pred EEEEEEEEEEeec--------cCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEE
Q 043474 38 RAEIVGTITSRDH--------KPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVA 109 (160)
Q Consensus 38 ~v~ivG~V~~~~~--------~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V 109 (160)
+..|.|+|.+... .+++.+.+.|-|.||.|.|.+|.+... ...+.++.|+.+
T Consensus 20 ~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~--------------------~~~~~l~~G~vy 79 (246)
T 1jmc_A 20 KWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVD--------------------KFFPLIEVNKVY 79 (246)
T ss_dssp CCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHH--------------------HHGGGCCTTCEE
T ss_pred ceEEEEEEEEecccceeeCCCCCceEEEEEEECCCCeEEEEEChHHHH--------------------HhhhhcccCCEE
Confidence 4567777776432 124668999999999999999975432 234678999999
Q ss_pred EEEEE-ece----e---CCceEEEEE---EEEEcCC
Q 043474 110 RVRGR-IAS----Y---RGDVQITVS---DVVIEKD 134 (160)
Q Consensus 110 ~V~G~-v~~----f---~~~~qi~~~---~i~~v~d 134 (160)
.+.+- |+. | .+..+|.+. .|.++.+
T Consensus 80 ~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~ 115 (246)
T 1jmc_A 80 YFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCED 115 (246)
T ss_dssp EEECCEEEECCGGGCCCCCSEEEECCTTCEEEECCS
T ss_pred EECCCEEEEcccCcccCCCCEEEEEcCCcEEEEccC
Confidence 88873 332 2 234455544 3565544
No 44
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=94.82 E-value=0.055 Score=41.45 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=47.0
Q ss_pred eEEEEEEEEEEeec------c--C--CceEEEEEeCCCc-eEEEEEeecCccCCCCCCCCCCcccccccccccccccccc
Q 043474 37 SRAEIVGTITSRDH------K--P--SKFIKFTVDDGTG-CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKI 105 (160)
Q Consensus 37 ~~v~ivG~V~~~~~------~--~--~~~~~~~IdDgTG-~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (160)
..+-++|.|.++.. + + .....++|.|.|| +|.|.+|.+.... -....
T Consensus 139 ~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~~i~~tLWg~~a~~----------------------~~~~~ 196 (246)
T 1jmc_A 139 SLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADK----------------------FDGSR 196 (246)
T ss_dssp CEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEEHHHHHH----------------------CCCTT
T ss_pred CceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCCEEEEEEEchhhhh----------------------cccCC
Confidence 35778888887653 2 1 2456899999999 5999999876431 11357
Q ss_pred CcEEEEEEE-eceeCCceEEEEE
Q 043474 106 GLVARVRGR-IASYRGDVQITVS 127 (160)
Q Consensus 106 G~~V~V~G~-v~~f~~~~qi~~~ 127 (160)
|.+|.+.|- ++.|+ .++|.+.
T Consensus 197 ~~vv~i~~~~v~~f~-g~~ls~~ 218 (246)
T 1jmc_A 197 QPVLAIKGARVSDFG-GRSLSVL 218 (246)
T ss_dssp CCEEEEEEEEEECTT-SSEEECC
T ss_pred CCEEEEEEEEEEecC-CeEEEec
Confidence 778777764 77885 4676643
No 45
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=94.53 E-value=0.14 Score=34.47 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=27.0
Q ss_pred EEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEece--eCCce-EEEEEEEE
Q 043474 67 VPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIAS--YRGDV-QITVSDVV 130 (160)
Q Consensus 67 I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~~--f~~~~-qi~~~~i~ 130 (160)
|+|++|.+..+ ....+..|..|.|.|+++. |+++. -+.+..+.
T Consensus 50 i~vv~wGk~AE---------------------~~~~~~kGs~V~VeGrL~trs~~s~~lvlhi~~~~ 95 (101)
T 3en2_A 50 IEALGAGKMAS---------------------VLDRIAPGTVLECVGFLARKHRSSKALVFHISGLE 95 (101)
T ss_dssp EEEEEETHHHH---------------------HHTTSCTTCEEEEEEEEEECC----CEEEEEEEEE
T ss_pred EEEEEEhHHHH---------------------HHhhcCCCCEEEEEEEEEeCcCCCCeeEEEEeccc
Confidence 88899986543 2245789999999999984 44432 24444443
No 46
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=94.33 E-value=0.91 Score=31.99 Aligned_cols=78 Identities=14% Similarity=0.265 Sum_probs=50.1
Q ss_pred eEEEEEEEEEEeec-----cCCceEEEEEeC-----CCc-------eEEEEEeecCccCCCCCCCCCCcccccccccccc
Q 043474 37 SRAEIVGTITSRDH-----KPSKFIKFTVDD-----GTG-------CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDF 99 (160)
Q Consensus 37 ~~v~ivG~V~~~~~-----~~~~~~~~~IdD-----gTG-------~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (160)
.+|.++|.+..--+ .......|+|.- .+| -|+|++|.+..+. .
T Consensus 20 NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~--------------------~ 79 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQA--------------------I 79 (134)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGG--------------------G
T ss_pred eEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHH--------------------H
Confidence 77888888876321 122555555532 123 2899999775541 2
Q ss_pred ccccccCcEEEEEEEeceeCC-----ceEEEEEEEEEcCC
Q 043474 100 AAKIKIGLVARVRGRIASYRG-----DVQITVSDVVIEKD 134 (160)
Q Consensus 100 ~~~~~~G~~V~V~G~v~~f~~-----~~qi~~~~i~~v~d 134 (160)
...++.|..|.|.|+++...+ +.-+.+..|..++.
T Consensus 80 ~~yl~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~ 119 (134)
T 1v1q_A 80 THSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS 119 (134)
T ss_dssp GTTCCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTS
T ss_pred HHhcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcC
Confidence 246899999999999997632 22356777777654
No 47
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=94.28 E-value=0.62 Score=31.26 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=46.3
Q ss_pred eEEEEEEEEEEeec-----cCCceEEEEEe-------CC----Cce-EEEEEeecCccCCCCCCCCCCcccccccccccc
Q 043474 37 SRAEIVGTITSRDH-----KPSKFIKFTVD-------DG----TGC-VPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDF 99 (160)
Q Consensus 37 ~~v~ivG~V~~~~~-----~~~~~~~~~Id-------Dg----TG~-I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (160)
.+|.++|.+..--+ ...+...|+|. +| +-. |+|+.|.+..+
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae---------------------- 65 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE---------------------- 65 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH----------------------
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh----------------------
Confidence 66777787776321 11244455544 22 123 78888876431
Q ss_pred ccccccCcEEEEEEEec--eeCCc-eEEEEEEEEEc
Q 043474 100 AAKIKIGLVARVRGRIA--SYRGD-VQITVSDVVIE 132 (160)
Q Consensus 100 ~~~~~~G~~V~V~G~v~--~f~~~-~qi~~~~i~~v 132 (160)
...++.|+.|.|.|+++ .|++. .-+.+..|..+
T Consensus 66 ~~~l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 66 EWQYRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp HSTTCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred hhccCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 24599999999999997 46554 34677777755
No 48
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=94.01 E-value=0.32 Score=35.16 Aligned_cols=81 Identities=11% Similarity=0.220 Sum_probs=52.2
Q ss_pred EeeEEEEEEEEEEe---ec--cCCceEEEEEe------CC-Cc-------eEEEEEeecCccCCCCCCCCCCcccccccc
Q 043474 35 LLSRAEIVGTITSR---DH--KPSKFIKFTVD------DG-TG-------CVPCVLWLNHLTSLYLPRRDPSTVRLIAGV 95 (160)
Q Consensus 35 ~i~~v~ivG~V~~~---~~--~~~~~~~~~Id------Dg-TG-------~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
.+.+|.|+|.|..- .. ....++.|+|. |. +| -+.|++|.+..+
T Consensus 7 ~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae------------------ 68 (158)
T 3tqy_A 7 GVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAE------------------ 68 (158)
T ss_dssp CEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHH------------------
T ss_pred ccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHH------------------
Confidence 46788888888762 11 11255666652 22 33 378999976432
Q ss_pred ccccccccccCcEEEEEEEece--eC---Cc----eEEEEEEEEEcCCh
Q 043474 96 ATDFAAKIKIGLVARVRGRIAS--YR---GD----VQITVSDVVIEKDP 135 (160)
Q Consensus 96 ~~~~~~~~~~G~~V~V~G~v~~--f~---~~----~qi~~~~i~~v~d~ 135 (160)
.....++.|+.|.|.|+|+. |. |+ ..|.+..|..+...
T Consensus 69 --~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 69 --IVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp --HHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred --HHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 12245899999999999975 53 22 47888999887654
No 49
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=93.97 E-value=0.21 Score=34.03 Aligned_cols=82 Identities=20% Similarity=0.350 Sum_probs=50.9
Q ss_pred EeeEEEEEEEEEEe---e--ccCCceEEEEEe------C-----CCceEEEEEeecCccCCCCCCCCCCccccccccccc
Q 043474 35 LLSRAEIVGTITSR---D--HKPSKFIKFTVD------D-----GTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATD 98 (160)
Q Consensus 35 ~i~~v~ivG~V~~~---~--~~~~~~~~~~Id------D-----gTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (160)
.+.+|.++|.|..- . ....++..|+|. | .|--++|++|....+.
T Consensus 4 mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~-------------------- 63 (116)
T 3vdy_A 4 MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAEN-------------------- 63 (116)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHH--------------------
T ss_pred eEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHH--------------------
Confidence 45677788887751 1 111255566652 1 1223999999765431
Q ss_pred cccccccCcEEEEEEEece--eCC---c----eEEEEEEEEEcCChh
Q 043474 99 FAAKIKIGLVARVRGRIAS--YRG---D----VQITVSDVVIEKDPN 136 (160)
Q Consensus 99 ~~~~~~~G~~V~V~G~v~~--f~~---~----~qi~~~~i~~v~d~n 136 (160)
....++.|+.|.|.|+++. |.+ + ..|.+..|..++..+
T Consensus 64 ~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~~ 110 (116)
T 3vdy_A 64 TALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPKP 110 (116)
T ss_dssp HHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC---
T ss_pred HHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCCC
Confidence 2245899999999999974 543 1 478999998876543
No 50
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.68 E-value=0.08 Score=47.60 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=50.2
Q ss_pred eEEEEEEEEEEeec---cCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCcccccccccccccccccc--CcEEEE
Q 043474 37 SRAEIVGTITSRDH---KPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKI--GLVARV 111 (160)
Q Consensus 37 ~~v~ivG~V~~~~~---~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--G~~V~V 111 (160)
..+.+.|.|.+... +....+.+++.|+||.+.++.|.... ....+++ |..+.+
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~----------------------~~~~~~~~~g~~~~~ 223 (780)
T 1gm5_A 166 EKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDY----------------------LQTYLKQLTGKEVFV 223 (780)
T ss_dssp CCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCT----------------------THHHHHTTCSSCEEE
T ss_pred CEEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcHH----------------------HHhhCccCCCCEEEE
Confidence 47788888887542 22356789999999999998665222 2256788 999999
Q ss_pred EEEecee--CCceEEEEEE
Q 043474 112 RGRIASY--RGDVQITVSD 128 (160)
Q Consensus 112 ~G~v~~f--~~~~qi~~~~ 128 (160)
.|+++.| .+..|+.--.
T Consensus 224 ~G~~~~~~~~~~~~~~~p~ 242 (780)
T 1gm5_A 224 TGTVKSNAYTGQYEIHNAE 242 (780)
T ss_dssp EEEECSCCTTSSCCEEEEE
T ss_pred EEEEEEccCCCcEEEEcCE
Confidence 9999986 5665654433
No 51
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=93.63 E-value=0.077 Score=44.38 Aligned_cols=70 Identities=17% Similarity=0.332 Sum_probs=47.0
Q ss_pred EEEEEEEEEEeec------c--C--CceEEEEEeCCCc-eEEEEEeecCccCCCCCCCCCCccccccccccccccccccC
Q 043474 38 RAEIVGTITSRDH------K--P--SKFIKFTVDDGTG-CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIG 106 (160)
Q Consensus 38 ~v~ivG~V~~~~~------~--~--~~~~~~~IdDgTG-~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 106 (160)
.|-|+|.|.++.. + + +....++|-|.|| .|+|.+|.+.... . ........|
T Consensus 135 ~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~~i~~tLWg~~A~~-----------------f-~~~~~~~~~ 196 (444)
T 4gop_C 135 QCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAET-----------------F-PTNAGVDEK 196 (444)
T ss_dssp CCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCBEEEEEEEHHHHHT-----------------S-TTSTTSSSC
T ss_pred ceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCCEEEEEEEhhhhhh-----------------h-hhhhccCCC
Confidence 4566777777643 2 1 2557999999999 7999999876541 0 001225678
Q ss_pred cEEEEEE-EeceeCCceEEEE
Q 043474 107 LVARVRG-RIASYRGDVQITV 126 (160)
Q Consensus 107 ~~V~V~G-~v~~f~~~~qi~~ 126 (160)
.+|.++| +|+.|+|+ .|.+
T Consensus 197 ~VV~i~~~kV~~f~G~-~ls~ 216 (444)
T 4gop_C 197 PVLAFKGVKVGDFGGR-SLSM 216 (444)
T ss_dssp CEEEEESCEEECTTSS-EEEC
T ss_pred CEEEEEeEEEeecCCe-EEec
Confidence 8888876 57889885 6644
No 52
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=93.45 E-value=0.21 Score=36.06 Aligned_cols=81 Identities=11% Similarity=0.177 Sum_probs=49.2
Q ss_pred EeeEEEEEEEEEEe---e--ccCCceEEEEEe--C-----C------CceEEEEEeecCccCCCCCCCCCCccccccccc
Q 043474 35 LLSRAEIVGTITSR---D--HKPSKFIKFTVD--D-----G------TGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVA 96 (160)
Q Consensus 35 ~i~~v~ivG~V~~~---~--~~~~~~~~~~Id--D-----g------TG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 96 (160)
.+.+|.|+|.+..- . ..+..+..|+|. . . |--+.|++|....+.
T Consensus 15 ~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~------------------ 76 (153)
T 1z9f_A 15 FFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEF------------------ 76 (153)
T ss_dssp CCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHH------------------
T ss_pred ceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHH------------------
Confidence 35677777777651 1 111255566653 2 1 234899999765431
Q ss_pred cccccccccCcEEEEEEEece--eCC---c----eEEEEEEEEEcCCh
Q 043474 97 TDFAAKIKIGLVARVRGRIAS--YRG---D----VQITVSDVVIEKDP 135 (160)
Q Consensus 97 ~~~~~~~~~G~~V~V~G~v~~--f~~---~----~qi~~~~i~~v~d~ 135 (160)
....++.|+.|.|.|+++. |.+ + ..|.+..|..+...
T Consensus 77 --~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 77 --ARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp --HHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred --HHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 2346899999999999986 542 2 46899999888654
No 53
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=93.45 E-value=0.22 Score=34.98 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=36.7
Q ss_pred eEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEece--eCCc-------eEEEEEEEEEcCCh
Q 043474 66 CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIAS--YRGD-------VQITVSDVVIEKDP 135 (160)
Q Consensus 66 ~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~~--f~~~-------~qi~~~~i~~v~d~ 135 (160)
-++|++|....+. ....++.|+.|.|.|+++. |.++ ..|.+..|..+...
T Consensus 50 ~~~v~~wg~~Ae~--------------------~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 50 FIDARLFGRTAEI--------------------ANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEEHHHHHH--------------------HHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEEcHHHHH--------------------HHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 4999999765431 2245899999999999975 5432 35899999988654
No 54
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=93.11 E-value=0.27 Score=36.28 Aligned_cols=84 Identities=14% Similarity=0.126 Sum_probs=51.1
Q ss_pred EEEEEeCCCceEEEEEeecCccCCCCCCCCCCcccccccc-------c-cccccccc--cC--cEEEEEEEeceeCCc--
Q 043474 56 IKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGV-------A-TDFAAKIK--IG--LVARVRGRIASYRGD-- 121 (160)
Q Consensus 56 ~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~--~G--~~V~V~G~v~~f~~~-- 121 (160)
+.+.|.|.||.+.|.++.+..+.. +-.++++ + ......+. .+ -.++++.+...|++.
T Consensus 81 l~~~i~D~Tg~~~~t~F~~~ae~i---------lG~sA~el~~l~e~~~~~~~~~~~~~~~~~~~f~l~vk~e~yn~e~r 151 (181)
T 1l1o_C 81 LSVNIADFQENQWVTCFQESAEAI---------LGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESR 151 (181)
T ss_dssp EEEEEECSSCEEEEEEEHHHHHHH---------HSSCHHHHHHHTTSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----
T ss_pred EEEEEEeCCCCEEEEEEhHHHHHH---------hCCCHHHHHHHHhhChHHHHHHHHHhcCceEEEEEEEEEeecCCEEE
Confidence 689999999999999998765321 0001110 0 00001111 13 366777777789876
Q ss_pred eEEEEEEEEEcCChhHHHHHHHHHHHHH
Q 043474 122 VQITVSDVVIEKDPNMEVLHWLDCLRLA 149 (160)
Q Consensus 122 ~qi~~~~i~~v~d~n~~~~h~le~~~~~ 149 (160)
....+.++.|++ ..++..+.++.+..+
T Consensus 152 ~~~~v~~~~~vd-~~~e~~~L~~~i~~~ 178 (181)
T 1l1o_C 152 IKATVMDVKPVD-YREYGRRLVMSIRRS 178 (181)
T ss_dssp CEEEEEEEEECC-HHHHHHHHHHHHHHH
T ss_pred EEEEEEEeeeCC-HHHHHHHHHHHHHHh
Confidence 457888888865 788899999988643
No 55
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=93.07 E-value=0.82 Score=34.35 Aligned_cols=49 Identities=29% Similarity=0.233 Sum_probs=33.5
Q ss_pred ceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEE-EeceeCCceEEE
Q 043474 54 KFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRG-RIASYRGDVQIT 125 (160)
Q Consensus 54 ~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G-~v~~f~~~~qi~ 125 (160)
+++.|.|.|.||.|+++....-.. -.+++||-+|..- .++...+++||.
T Consensus 139 ~~~~YeI~DnTG~MeVvv~G~~~~-----------------------i~CEeGDKLrL~cFeL~~~~~~~qL~ 188 (208)
T 3rn5_A 139 KNILFDLSDNTGKMEVLGVRNEDT-----------------------MKCKEGDKVRLTFFTLSKNGEKLQLT 188 (208)
T ss_dssp SEEEEEEEETTEEEEEEEECSTGG-----------------------GSCCTTCEEEEEEEEEEECSSSEEEE
T ss_pred ceEEEEEecCCCcEEEEEeccCcc-----------------------cccCCCCeeEEEEEEEeccCCeeeEE
Confidence 679999999999999998755432 3577888665443 244444555553
No 56
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=92.34 E-value=0.6 Score=35.12 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=32.1
Q ss_pred ceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEece--eCC-------ceEEEEEEEEE
Q 043474 65 GCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIAS--YRG-------DVQITVSDVVI 131 (160)
Q Consensus 65 G~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~~--f~~-------~~qi~~~~i~~ 131 (160)
--|+|++|.+..+ .....++.|+.|.|.|+|+. |.+ ..+|.+.+|.+
T Consensus 53 ~wi~VvawgklAE--------------------~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 53 LFLTCSVWRQAAE--------------------NVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEEEETHHHH--------------------HHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEEEEhHHHH--------------------HHHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 3489999976543 12346899999999999975 543 24677777765
No 57
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=92.27 E-value=0.57 Score=37.35 Aligned_cols=79 Identities=13% Similarity=0.337 Sum_probs=53.7
Q ss_pred eeEEEEEEEEEEe---ec--cCCceEEEEEe------CCCc-------eEEEEEeecCccCCCCCCCCCCcccccccccc
Q 043474 36 LSRAEIVGTITSR---DH--KPSKFIKFTVD------DGTG-------CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVAT 97 (160)
Q Consensus 36 i~~v~ivG~V~~~---~~--~~~~~~~~~Id------DgTG-------~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (160)
+..|.|+|.|..- .. ....++.|+|. |..| -|.|++|....+
T Consensus 129 mN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae-------------------- 188 (301)
T 1se8_A 129 MNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAE-------------------- 188 (301)
T ss_dssp EEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHH--------------------
T ss_pred eeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHH--------------------
Confidence 6789999999872 11 12366777764 2223 499999976543
Q ss_pred ccccccccCcEEEEEEEece--eCCc-------eEEEEEEEEEcCCh
Q 043474 98 DFAAKIKIGLVARVRGRIAS--YRGD-------VQITVSDVVIEKDP 135 (160)
Q Consensus 98 ~~~~~~~~G~~V~V~G~v~~--f~~~-------~qi~~~~i~~v~d~ 135 (160)
.... ++.|+.|.|.|+++. |.++ ..|.+.+|..+...
T Consensus 189 ~~~~-l~KG~~V~V~GrL~~~~y~dkdG~~r~~~ev~a~~i~~l~~k 234 (301)
T 1se8_A 189 NMKE-LRKGDPVMIMGRLVNEGWTDKDGNKRNSTRVEATRVEALARG 234 (301)
T ss_dssp HHTT-CCTTCEEEEEEEEEEEECC------CEEEEEEEEEEEECCC-
T ss_pred HHHh-cCCCCEEEEEEEEeeeeEECCCCcEEEEEEEEEEEEEEeccC
Confidence 1234 999999999999975 5432 46899999988643
No 58
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=92.20 E-value=0.82 Score=32.37 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=42.6
Q ss_pred eEEEEEEEEEE--eecc-CCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEE
Q 043474 37 SRAEIVGTITS--RDHK-PSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRG 113 (160)
Q Consensus 37 ~~v~ivG~V~~--~~~~-~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G 113 (160)
++++|.|.|.. +... ++..++|.|.|+.++|.+.+-.. ..+.|+.|.=|-+.|
T Consensus 29 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~Gi------------------------lPDlFrEGqgVVa~G 84 (136)
T 1sr3_A 29 QRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGI------------------------LPDLFREGQGVVVQG 84 (136)
T ss_dssp SEEEEEEEECTTTCEECSSSSEEEEEEECSSCEEEEEEESC------------------------CCTTCCTTSEEEEEE
T ss_pred CEEEEeeEEeCCcEEEcCCCCEEEEEEEeCCcEEEEEECCC------------------------CCccccCCCeEEEEE
Confidence 68999999983 4432 23458999999988888876332 235789999999999
Q ss_pred Eece
Q 043474 114 RIAS 117 (160)
Q Consensus 114 ~v~~ 117 (160)
++..
T Consensus 85 ~l~~ 88 (136)
T 1sr3_A 85 ELEK 88 (136)
T ss_dssp EECS
T ss_pred EECC
Confidence 9853
No 59
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=91.96 E-value=0.64 Score=36.16 Aligned_cols=80 Identities=11% Similarity=0.216 Sum_probs=54.3
Q ss_pred EeeEEEEEEEEEEee-----ccCCceEEEEEe----------CCCceEEEEEeecCccCCCCCCCCCCcccccccccccc
Q 043474 35 LLSRAEIVGTITSRD-----HKPSKFIKFTVD----------DGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDF 99 (160)
Q Consensus 35 ~i~~v~ivG~V~~~~-----~~~~~~~~~~Id----------DgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (160)
.+..|.++|.|..-- .....+..|+|. |.|--|.|++|....+ ..
T Consensus 127 ~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae--------------------~~ 186 (264)
T 2fxq_A 127 ALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAE--------------------WA 186 (264)
T ss_dssp CCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHH--------------------HH
T ss_pred ceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHH--------------------Hh
Confidence 368899999998721 112366777763 2344599999976443 13
Q ss_pred ccccccCcEEEEEEEece--eCC---c----eEEEEEEEEEcCCh
Q 043474 100 AAKIKIGLVARVRGRIAS--YRG---D----VQITVSDVVIEKDP 135 (160)
Q Consensus 100 ~~~~~~G~~V~V~G~v~~--f~~---~----~qi~~~~i~~v~d~ 135 (160)
. .++.|+.|.|.|+++. |.+ + ..|.+.+|..+...
T Consensus 187 ~-~l~KG~~V~V~G~l~~~~~~~~dG~~~~~~ev~a~~i~~l~~~ 230 (264)
T 2fxq_A 187 S-ELRKGDGLLVIGRLVNDSWTSSSGERRFQTRVEALRLERPTRG 230 (264)
T ss_dssp T-TCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCC-
T ss_pred h-hcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEECccc
Confidence 3 7899999999999975 543 2 46889999877654
No 60
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=91.52 E-value=0.4 Score=34.07 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=43.8
Q ss_pred EeeEEEEEEEEEEe---ec--cCCceEEEEEe------C--------CCceEEEEEeecCccCCCCCCCCCCcccccccc
Q 043474 35 LLSRAEIVGTITSR---DH--KPSKFIKFTVD------D--------GTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGV 95 (160)
Q Consensus 35 ~i~~v~ivG~V~~~---~~--~~~~~~~~~Id------D--------gTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
.+..|.|+|.|..- .. ....++.|+|. | .|--|+|++|.+..+.
T Consensus 4 ~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~----------------- 66 (145)
T 1qvc_A 4 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEV----------------- 66 (145)
T ss_dssp CEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHH-----------------
T ss_pred ceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHH-----------------
Confidence 36788899998762 11 12366777773 1 1334999999764431
Q ss_pred ccccccccccCcEEEEEEEece--eC
Q 043474 96 ATDFAAKIKIGLVARVRGRIAS--YR 119 (160)
Q Consensus 96 ~~~~~~~~~~G~~V~V~G~v~~--f~ 119 (160)
....++.|+.|.|.|+++. |.
T Consensus 67 ---~~~~l~KG~~V~V~G~L~~~~~~ 89 (145)
T 1qvc_A 67 ---ASEYLRKGSQVYIEGQLRTRKWT 89 (145)
T ss_dssp ---HHHHCCTTCEEEEEEEEEEEEEC
T ss_pred ---HHHhcCCCCEEEEEEEEEeeEEE
Confidence 2245899999999999975 64
No 61
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=91.48 E-value=1.7 Score=29.29 Aligned_cols=65 Identities=18% Similarity=0.338 Sum_probs=38.2
Q ss_pred eEEEEEEEEEEeec---cCCceEEEEEe-CCCc-----eEEEEEeecCccCCCCCCCCCCccccccccccccccccccCc
Q 043474 37 SRAEIVGTITSRDH---KPSKFIKFTVD-DGTG-----CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGL 107 (160)
Q Consensus 37 ~~v~ivG~V~~~~~---~~~~~~~~~Id-DgTG-----~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 107 (160)
+++.++|.|.+++. .+.+-..|+|. |+.+ .+..+++.+.... ....+.++.|.
T Consensus 4 sn~vlvG~V~DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~------------------~~lk~~lk~g~ 65 (105)
T 4dka_C 4 SNALMIGRIADVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPA------------------SLLKDQVKLGS 65 (105)
T ss_dssp CEEEEEEEEEEEEEEEETTEEEEEEEEEECC----CCEEEEEEEECC---------------------------CCCTTC
T ss_pred cceEEEEEEEEeeecccccceEEEEEEEEeCCCCCcccEEEEEEcCccchH------------------HHHHHHHhCCC
Confidence 67899999999997 23244444442 4443 2444555443321 12457899999
Q ss_pred EEEEEEEeceeC
Q 043474 108 VARVRGRIASYR 119 (160)
Q Consensus 108 ~V~V~G~v~~f~ 119 (160)
.|.|.|+++...
T Consensus 66 ~v~V~GrLRm~p 77 (105)
T 4dka_C 66 RVLVQGTLRMNR 77 (105)
T ss_dssp EEEEEEEEECCC
T ss_pred EEEEEeEEEeee
Confidence 999999998744
No 62
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=91.46 E-value=0.53 Score=39.26 Aligned_cols=90 Identities=12% Similarity=0.117 Sum_probs=54.0
Q ss_pred EEEEEeCCCceEEEEEeecCccCCCCCCCCCC-cccccccccc-----ccccccccCcEEEEEEEeceeCCce--EEEEE
Q 043474 56 IKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPS-TVRLIAGVAT-----DFAAKIKIGLVARVRGRIASYRGDV--QITVS 127 (160)
Q Consensus 56 ~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~G~~V~V~G~v~~f~~~~--qi~~~ 127 (160)
+.+.|+|+||.+.|.+|.+..+..- |.+. ++.-..+.+. ......-.--.++++.+...|++.. ...+.
T Consensus 346 l~~~v~D~Tg~~~~~~F~~~a~~ll---G~sa~el~~~~~~d~~~~~~~~~~~~~k~~~f~~~~k~~~y~~~~r~~~~v~ 422 (444)
T 4gop_C 346 LSTNVADATGQMWLSGFNEDATQLI---GMSAGELHKLREESESEFSAALHRAANRMYMFNCRAKMDTFNDTARVRYTIS 422 (444)
T ss_dssp EEEEEEETTEEEEEEECHHHHHHHT---TSCHHHHHHHHTTCHHHHHHHHHTTSSCEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEehHHHHHHc---CCCHHHHHHHHhcChHHHHHHHHHhhCcEEEEEEEEEeeeeCCeeEEEEEEE
Confidence 6889999999999999977654210 0000 0000000000 0011222334677777788999874 46777
Q ss_pred EEEEcCChhHHHHHHHHHHHHH
Q 043474 128 DVVIEKDPNMEVLHWLDCLRLA 149 (160)
Q Consensus 128 ~i~~v~d~n~~~~h~le~~~~~ 149 (160)
++.|++ +.++..++++.+..|
T Consensus 423 ~~~~~d-~~~~~~~l~~~i~~~ 443 (444)
T 4gop_C 423 RAAPVD-FAKAGMELVDAIRAY 443 (444)
T ss_dssp EEEECC-HHHHHHHHHHHHHHH
T ss_pred EeeeCC-HHHHHHHHHHHHHhh
Confidence 777764 888899999888654
No 63
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=91.34 E-value=0.7 Score=32.17 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=25.4
Q ss_pred cccccCcEEEEEEEece--eCC---c----eEEEEEEEEEcCChh
Q 043474 101 AKIKIGLVARVRGRIAS--YRG---D----VQITVSDVVIEKDPN 136 (160)
Q Consensus 101 ~~~~~G~~V~V~G~v~~--f~~---~----~qi~~~~i~~v~d~n 136 (160)
..++.|+.|.|.|+++. |.+ + ..|.+..|..+...+
T Consensus 84 ~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~~ 128 (132)
T 3ull_A 84 QYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQT 128 (132)
T ss_dssp HHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC----
T ss_pred hhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCCC
Confidence 46899999999999974 632 2 468899888776553
No 64
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=91.23 E-value=0.3 Score=33.66 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=43.8
Q ss_pred eEeeEEEEEEEEEEe---e--ccCCceEEEEEe------CC-Cc-------eEEEEEee-cCccCCCCCCCCCCcccccc
Q 043474 34 KLLSRAEIVGTITSR---D--HKPSKFIKFTVD------DG-TG-------CVPCVLWL-NHLTSLYLPRRDPSTVRLIA 93 (160)
Q Consensus 34 ~~i~~v~ivG~V~~~---~--~~~~~~~~~~Id------Dg-TG-------~I~~~~w~-~~~~~~~~~~~~~~~~~~~~ 93 (160)
..+.+|.|+|.+..- . ....++..|+|. |. +| -+.|++|. ...+
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae---------------- 67 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVD---------------- 67 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHH----------------
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHH----------------
Confidence 457888899988762 1 112256667663 21 23 39999998 4432
Q ss_pred ccccccccccccCcEEEEEEEec--eeCC
Q 043474 94 GVATDFAAKIKIGLVARVRGRIA--SYRG 120 (160)
Q Consensus 94 ~~~~~~~~~~~~G~~V~V~G~v~--~f~~ 120 (160)
.....++.|+.|.|.|+++ .|.+
T Consensus 68 ----~~~~~l~KG~~V~V~G~L~~~~~~d 92 (124)
T 3ulp_A 68 ----LIDKYLRKGRRVYVQGSLHTRKWHT 92 (124)
T ss_dssp ----HHHHHCCTTCEEEEEEEEEEEEECC
T ss_pred ----HHHhhcCCCCEEEEEEEEEeEEEeC
Confidence 1224689999999999997 5754
No 65
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=91.20 E-value=1.7 Score=37.08 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=50.0
Q ss_pred eeEEEEEEEEEEeec----cCCc-eEEEEEeCCC-c-------eE-----EEEEeecCccCCCCCCCCCCcccccccccc
Q 043474 36 LSRAEIVGTITSRDH----KPSK-FIKFTVDDGT-G-------CV-----PCVLWLNHLTSLYLPRRDPSTVRLIAGVAT 97 (160)
Q Consensus 36 i~~v~ivG~V~~~~~----~~~~-~~~~~IdDgT-G-------~I-----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (160)
-..|.++|+|+.... +++. .++|+|-|.| + -| .|.++.+..+
T Consensus 49 ~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e-------------------- 108 (495)
T 1jb7_A 49 AQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFE-------------------- 108 (495)
T ss_dssp CSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGG--------------------
T ss_pred CCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChH--------------------
Confidence 356788999998652 2233 3689999955 2 16 8888877543
Q ss_pred cccccc-ccCcEEEEE-EEeceeCCceEEEEE
Q 043474 98 DFAAKI-KIGLVARVR-GRIASYRGDVQITVS 127 (160)
Q Consensus 98 ~~~~~~-~~G~~V~V~-G~v~~f~~~~qi~~~ 127 (160)
....+ ..||+|++. -+|+.|+|..|....
T Consensus 109 -~LP~V~~~GDII~LhrvkIq~~ng~~~~v~~ 139 (495)
T 1jb7_A 109 -DLPIIHRAGDIIRVHRATLRLYNGQRQFNAN 139 (495)
T ss_dssp -GSCCCCEETCEEEEEEEEEEEETTEEEEEEE
T ss_pred -HCCCCCCCCCEEEEEEEEEEEECCcEEEEec
Confidence 22445 699999995 468999999987654
No 66
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=91.08 E-value=1.1 Score=31.74 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=48.7
Q ss_pred eEEEEEEEEE--Eeecc-CCceEEEEEeC-CCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEE
Q 043474 37 SRAEIVGTIT--SRDHK-PSKFIKFTVDD-GTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVR 112 (160)
Q Consensus 37 ~~v~ivG~V~--~~~~~-~~~~~~~~IdD-gTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~ 112 (160)
++++|.|.|. ++... ++..++|.|.| +..+|.+.+-.. ..+.|+.|.-|-+.
T Consensus 33 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~Gi------------------------lPDlFrEGqgVVa~ 88 (136)
T 1j6q_A 33 QRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDL------------------------LPDLFREGQGIVAQ 88 (136)
T ss_dssp CEEEEEEEECTTCCEECTTSSCEEEEEECTTCCCEEEEECSC------------------------CTTSCCSSSEEEEE
T ss_pred CEEEEeEEEeCCcEEecCCCCEEEEEEEcCCCCEEEEEECCC------------------------CCccccCCCeEEEE
Confidence 6899999996 34432 23458999999 777888875322 23578999999999
Q ss_pred EEeceeCCceEEEEEEEEEcCChhHHH
Q 043474 113 GRIASYRGDVQITVSDVVIEKDPNMEV 139 (160)
Q Consensus 113 G~v~~f~~~~qi~~~~i~~v~d~n~~~ 139 (160)
|++.. .--+.+..|-.--|.++..
T Consensus 89 G~l~~---~g~F~A~eVLaKhdekY~p 112 (136)
T 1j6q_A 89 GVLGE---DGKLAATEVLAKHDENYMP 112 (136)
T ss_dssp EEECS---TTSEEEEEEECCC------
T ss_pred EEECC---CCeEEEEEEEecCCCCCCC
Confidence 99853 1246677766444444443
No 67
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=90.93 E-value=1.3 Score=35.18 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=49.6
Q ss_pred eeEEEEEEEEEEe---e--ccCCceEEEEEe------CCCc-------eEEEEEeecCccCCCCCCCCCCcccccccccc
Q 043474 36 LSRAEIVGTITSR---D--HKPSKFIKFTVD------DGTG-------CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVAT 97 (160)
Q Consensus 36 i~~v~ivG~V~~~---~--~~~~~~~~~~Id------DgTG-------~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (160)
+.+|.|+|.|..- . .....++.|+|. |.+| -+.|++|....+
T Consensus 5 mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae-------------------- 64 (301)
T 1se8_A 5 MNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAE-------------------- 64 (301)
T ss_dssp EEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHH--------------------
T ss_pred eeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHH--------------------
Confidence 5778888888652 1 122356666663 1223 388999976432
Q ss_pred ccccc-cccCcEEEEEEEec--eeCCc-------eEEEEEEEEEcCC
Q 043474 98 DFAAK-IKIGLVARVRGRIA--SYRGD-------VQITVSDVVIEKD 134 (160)
Q Consensus 98 ~~~~~-~~~G~~V~V~G~v~--~f~~~-------~qi~~~~i~~v~d 134 (160)
..... ++.|+.|.|.|+++ .|.++ ..|.+..|..+..
T Consensus 65 ~~~~~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~ 111 (301)
T 1se8_A 65 WQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGT 111 (301)
T ss_dssp HHHHTCCCTTCEEEEEEEEEEEEEC-----CEEEEEEEEEEEEECSS
T ss_pred HHHhhCCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEeec
Confidence 12245 79999999999998 47542 3588888887754
No 68
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=90.28 E-value=0.85 Score=34.16 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.0
Q ss_pred ceEEEEEeCCCceEEEEEeecC
Q 043474 54 KFIKFTVDDGTGCVPCVLWLNH 75 (160)
Q Consensus 54 ~~~~~~IdDgTG~I~~~~w~~~ 75 (160)
+++.|.|.|.||.|+++....-
T Consensus 135 ~~~~YeI~DnTG~MeVvv~G~~ 156 (204)
T 3rlo_A 135 EFTYYEIQDNTGKMEVVVHGRL 156 (204)
T ss_dssp TEEEEEEEETTEEEEEEECGGG
T ss_pred ceEEEEEecCCCcEEEEEeccC
Confidence 6799999999999999986553
No 69
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=89.54 E-value=0.74 Score=33.65 Aligned_cols=81 Identities=10% Similarity=0.264 Sum_probs=49.2
Q ss_pred EeeEEEEEEEEEEe---ec--cCCceEEEEEe------C--------CCceEEEEEeec-CccCCCCCCCCCCccccccc
Q 043474 35 LLSRAEIVGTITSR---DH--KPSKFIKFTVD------D--------GTGCVPCVLWLN-HLTSLYLPRRDPSTVRLIAG 94 (160)
Q Consensus 35 ~i~~v~ivG~V~~~---~~--~~~~~~~~~Id------D--------gTG~I~~~~w~~-~~~~~~~~~~~~~~~~~~~~ 94 (160)
.+.+|.|+|.|..- .. ....++.|+|. | .|--+.|++|.+ ..+
T Consensus 22 ~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe----------------- 84 (169)
T 3lgj_A 22 MLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAK----------------- 84 (169)
T ss_dssp CEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHH-----------------
T ss_pred ceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHH-----------------
Confidence 57899999998762 11 12255666653 1 233489999976 332
Q ss_pred cccccccccccCcEEEEEEEece--eCC---c----eEEEE----EEEEEcCCh
Q 043474 95 VATDFAAKIKIGLVARVRGRIAS--YRG---D----VQITV----SDVVIEKDP 135 (160)
Q Consensus 95 ~~~~~~~~~~~G~~V~V~G~v~~--f~~---~----~qi~~----~~i~~v~d~ 135 (160)
.....++.|+.|.|.|+++. |.+ + ..|.+ ..|..++..
T Consensus 85 ---~~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 85 ---IALQYLHKGSKVYIEGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp ---HHHHHCCTTCEEEEEEEEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred ---HHHHhCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 12346899999999999975 542 2 23554 356666544
No 70
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=89.39 E-value=0.64 Score=33.88 Aligned_cols=62 Identities=24% Similarity=0.423 Sum_probs=39.7
Q ss_pred eeEEEEEEEEEEee-----ccCCceEEEEEe------C---------CCceEEEEEeecCccCCCCCCCCCCcccccccc
Q 043474 36 LSRAEIVGTITSRD-----HKPSKFIKFTVD------D---------GTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGV 95 (160)
Q Consensus 36 i~~v~ivG~V~~~~-----~~~~~~~~~~Id------D---------gTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
+..|.|+|.|..-- .....++.|+|. | .|--|+|++|.+..+
T Consensus 4 ~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae------------------ 65 (168)
T 3afp_A 4 DTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAE------------------ 65 (168)
T ss_dssp CCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHH------------------
T ss_pred cCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHH------------------
Confidence 45677777776521 111245566664 1 133499999976543
Q ss_pred ccccccccccCcEEEEEEEece
Q 043474 96 ATDFAAKIKIGLVARVRGRIAS 117 (160)
Q Consensus 96 ~~~~~~~~~~G~~V~V~G~v~~ 117 (160)
.....++.|+.|.|.|+|+.
T Consensus 66 --~~~~~l~KG~~V~VeGrL~~ 85 (168)
T 3afp_A 66 --NVAESLTRGARVIVTGRLKQ 85 (168)
T ss_dssp --HHHHHCCTTCEEEEEEEEEE
T ss_pred --HHHHhCCCCCEEEEEEEEEe
Confidence 12356899999999999975
No 71
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=89.16 E-value=0.74 Score=32.96 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=40.1
Q ss_pred eeEEEEEEEEEEeecc--C-CceEEEEEe--------------CCCceEEEEEeecC-ccCCCCCCCCCCcccccccccc
Q 043474 36 LSRAEIVGTITSRDHK--P-SKFIKFTVD--------------DGTGCVPCVLWLNH-LTSLYLPRRDPSTVRLIAGVAT 97 (160)
Q Consensus 36 i~~v~ivG~V~~~~~~--~-~~~~~~~Id--------------DgTG~I~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~ 97 (160)
+.+|.|+|.+..--++ + ..+..|+|. +.|--+.|++|.+. .+
T Consensus 6 ~NkV~LiGrLg~DPer~t~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe-------------------- 65 (148)
T 3k7u_C 6 VNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSA-------------------- 65 (148)
T ss_dssp CCCEEEEEEEEEEEEEESSSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHH--------------------
T ss_pred CcEEEEEEEeccCCEeeeCCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHH--------------------
Confidence 5677788877664322 1 245555552 23345999999864 32
Q ss_pred ccccccccCcEEEEEEEece
Q 043474 98 DFAAKIKIGLVARVRGRIAS 117 (160)
Q Consensus 98 ~~~~~~~~G~~V~V~G~v~~ 117 (160)
.....++.|+.|.|.|+++.
T Consensus 66 ~~~~yl~KG~~V~VeGrL~~ 85 (148)
T 3k7u_C 66 EVKQKVKEGNVVCVNGRLRL 85 (148)
T ss_dssp HHHHHCCTTCEEEEEEEEEE
T ss_pred HHHhhCCCCCEEEEEEEEEe
Confidence 12356999999999999975
No 72
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=88.32 E-value=0.51 Score=32.89 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=49.1
Q ss_pred eEeeEEEEEEEEEEee----ccCCceEEEEEe------C---C------CceEEEEEeecCccCCCCCCCCCCccccccc
Q 043474 34 KLLSRAEIVGTITSRD----HKPSKFIKFTVD------D---G------TGCVPCVLWLNHLTSLYLPRRDPSTVRLIAG 94 (160)
Q Consensus 34 ~~i~~v~ivG~V~~~~----~~~~~~~~~~Id------D---g------TG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~ 94 (160)
-.+..|.|+|.+..-- ..++.+..|+|. | | |--++|++|.+..+.
T Consensus 13 ~~~N~V~LiGrL~~dPelr~t~~G~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~---------------- 76 (128)
T 4dam_A 13 MNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATN---------------- 76 (128)
T ss_dssp BCCCEEEEEEEECSCCEEEEETTEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHH----------------
T ss_pred cceeEEEEEEEECCCCEEEEcCCCCEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHH----------------
Confidence 4678888889887621 111256667663 1 2 223889999765431
Q ss_pred cccccccccccCcEEEEEEEece--eC--Cc----eEEEEEEEEE
Q 043474 95 VATDFAAKIKIGLVARVRGRIAS--YR--GD----VQITVSDVVI 131 (160)
Q Consensus 95 ~~~~~~~~~~~G~~V~V~G~v~~--f~--~~----~qi~~~~i~~ 131 (160)
....++.|+.|.|.|+++. |. |+ ..|.+..|-+
T Consensus 77 ----~~~~l~KG~~V~VeGrL~~~~~dkdG~~r~~~ev~a~~vg~ 117 (128)
T 4dam_A 77 ----ASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGH 117 (128)
T ss_dssp ----HHHHCCTTCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred ----HHHhcCCCCEEEEEEEEEEeEEcCCCCEEEEEEEEEEEEEe
Confidence 2356899999999999964 62 22 3466666654
No 73
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=88.32 E-value=3 Score=32.29 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=49.8
Q ss_pred eeEEEEEEEEEEee-----ccCCceEEEEEe------CCCc-------eEEEEEeecCccCCCCCCCCCCcccccccccc
Q 043474 36 LSRAEIVGTITSRD-----HKPSKFIKFTVD------DGTG-------CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVAT 97 (160)
Q Consensus 36 i~~v~ivG~V~~~~-----~~~~~~~~~~Id------DgTG-------~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (160)
+.+|.|+|.|..-- .....+..|+|. |..| -+.|++|....+
T Consensus 5 ~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae-------------------- 64 (264)
T 2fxq_A 5 LNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAE-------------------- 64 (264)
T ss_dssp EEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHH--------------------
T ss_pred eeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHH--------------------
Confidence 56788888876521 111255666653 2223 388999976432
Q ss_pred ccccccccCcEEEEEEEec--eeC--Cc----eEEEEEEEEEcCChh
Q 043474 98 DFAAKIKIGLVARVRGRIA--SYR--GD----VQITVSDVVIEKDPN 136 (160)
Q Consensus 98 ~~~~~~~~G~~V~V~G~v~--~f~--~~----~qi~~~~i~~v~d~n 136 (160)
.....++.|+.|.|.|+++ .|. |+ ..|.+..|..+...+
T Consensus 65 ~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 65 MWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGRG 111 (264)
T ss_dssp HHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC-
T ss_pred HHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCCc
Confidence 1224689999999999995 464 22 368999999887554
No 74
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=87.98 E-value=5 Score=30.10 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=18.9
Q ss_pred ceEEEEEeCCCceEEEEEeecC
Q 043474 54 KFIKFTVDDGTGCVPCVLWLNH 75 (160)
Q Consensus 54 ~~~~~~IdDgTG~I~~~~w~~~ 75 (160)
+++.|.|.|.||.++++....-
T Consensus 143 ~~~~yeI~D~tG~MeVvv~G~~ 164 (206)
T 2oq0_A 143 KTTIYEIQDDRGKMDVVGTGQC 164 (206)
T ss_dssp SEEEEEEEETTEEEEEEEEGGG
T ss_pred ceEEEEEccCCCcEEEEEeCcc
Confidence 6799999999999999876544
No 75
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=87.47 E-value=0.97 Score=33.82 Aligned_cols=65 Identities=12% Similarity=0.269 Sum_probs=42.7
Q ss_pred EeeEEEEEEEEEEe---ec--cCCceEEEEEe------CC-Cc-------eEEEEEeec-CccCCCCCCCCCCccccccc
Q 043474 35 LLSRAEIVGTITSR---DH--KPSKFIKFTVD------DG-TG-------CVPCVLWLN-HLTSLYLPRRDPSTVRLIAG 94 (160)
Q Consensus 35 ~i~~v~ivG~V~~~---~~--~~~~~~~~~Id------Dg-TG-------~I~~~~w~~-~~~~~~~~~~~~~~~~~~~~ 94 (160)
.+.+|.|+|.|..- .. ...+++.|+|. |. +| -++|++|.+ ..+
T Consensus 25 ~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe----------------- 87 (193)
T 3pgz_A 25 SLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVK----------------- 87 (193)
T ss_dssp CEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHH-----------------
T ss_pred hcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHH-----------------
Confidence 57899999999872 21 12356667664 21 33 388999975 322
Q ss_pred cccccccccccCcEEEEEEEec--eeC
Q 043474 95 VATDFAAKIKIGLVARVRGRIA--SYR 119 (160)
Q Consensus 95 ~~~~~~~~~~~G~~V~V~G~v~--~f~ 119 (160)
.....++.|+.|.|.|+|+ .|.
T Consensus 88 ---~~~~yL~KGs~V~VeGrL~trswe 111 (193)
T 3pgz_A 88 ---VVEQYLKKGSKIYIEGQLQTRKWQ 111 (193)
T ss_dssp ---HHHHHCCTTCEEEEEEEEEEEEEE
T ss_pred ---HHHhhcCCCCEEEEEEEEEEEEeE
Confidence 0124689999999999997 564
No 76
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=86.31 E-value=1.3 Score=31.83 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=44.7
Q ss_pred CCceEECCeEeeEEEEEEEEEEeeccC---CceEEEE--EeCCC---c-----eEEEEEeecCccCCCCCCCCCCccccc
Q 043474 26 PATFSRSGKLLSRAEIVGTITSRDHKP---SKFIKFT--VDDGT---G-----CVPCVLWLNHLTSLYLPRRDPSTVRLI 92 (160)
Q Consensus 26 ~~~~~~~~~~i~~v~ivG~V~~~~~~~---~~~~~~~--IdDgT---G-----~I~~~~w~~~~~~~~~~~~~~~~~~~~ 92 (160)
++.....-+.+++|.++|+|.+.+.+- .....|+ ++... | -+.|++|. ...
T Consensus 34 ~~~~~~h~r~vN~VvLmGRvtdpq~ry~~~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfG-g~l--------------- 97 (148)
T 3stb_C 34 EGEVAAHWRCVNHCVMLGVVQNIQEGFVFEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFD-SDY--------------- 97 (148)
T ss_dssp ----CCCCSCSEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCCTTSCSEEEEEEEECS-HHH---------------
T ss_pred chhhhhhheecceEEEEEEecCccccccCCCcEEEEEEEEecCCCCCCCCccceEEEEEEC-ChH---------------
Confidence 344555667899999999999776541 1233333 43321 2 26777775 111
Q ss_pred cccccccccccccCcEEEEEEEece
Q 043474 93 AGVATDFAAKIKIGLVARVRGRIAS 117 (160)
Q Consensus 93 ~~~~~~~~~~~~~G~~V~V~G~v~~ 117 (160)
+......++.|+.|.|.|+|+.
T Consensus 98 ---AE~i~~ylkkG~rVlVeGRLrm 119 (148)
T 3stb_C 98 ---SSRVKEQLRDGEWFLVTGRLRM 119 (148)
T ss_dssp ---HHHHHHHCCTTCEEEEEEEEEE
T ss_pred ---HHHHHHHhcCCCEEEEEEEEEc
Confidence 0113468999999999999985
No 77
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=85.74 E-value=0.34 Score=35.79 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=41.4
Q ss_pred EeeEEEEEEEEEEeec-----cCCceEEEEEe------C-CCc-------eEEEEEeecCccCCCCCCCCCCcccccccc
Q 043474 35 LLSRAEIVGTITSRDH-----KPSKFIKFTVD------D-GTG-------CVPCVLWLNHLTSLYLPRRDPSTVRLIAGV 95 (160)
Q Consensus 35 ~i~~v~ivG~V~~~~~-----~~~~~~~~~Id------D-gTG-------~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
.+..|.|+|.|..--+ ....++.|+|. | .|| -|.|++|.+..+.
T Consensus 5 ~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~----------------- 67 (178)
T 1eqq_A 5 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEV----------------- 67 (178)
T ss_dssp CEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHH-----------------
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHH-----------------
Confidence 3577888888876211 11234455552 2 123 4899999765431
Q ss_pred ccccccccccCcEEEEEEEece--eCC
Q 043474 96 ATDFAAKIKIGLVARVRGRIAS--YRG 120 (160)
Q Consensus 96 ~~~~~~~~~~G~~V~V~G~v~~--f~~ 120 (160)
....++.|+.|.|.|+|+. |.+
T Consensus 68 ---~~~~l~KG~~V~VeGrL~~r~~~d 91 (178)
T 1eqq_A 68 ---ASEYLRKGSQVYIEGQLRTRKWTD 91 (178)
T ss_dssp ---HHHHCCTTCEEEECCEEEEEEEEC
T ss_pred ---HHHhcCCCCEEEEEEEEEeeeEEC
Confidence 2246899999999999975 643
No 78
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=84.61 E-value=6.6 Score=25.83 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=48.3
Q ss_pred eEEEEEEEEEE--eecc-CCceEEEEEeCC---CceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEE
Q 043474 37 SRAEIVGTITS--RDHK-PSKFIKFTVDDG---TGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVAR 110 (160)
Q Consensus 37 ~~v~ivG~V~~--~~~~-~~~~~~~~IdDg---TG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~ 110 (160)
+++++-|.|.. +... .+..++|.|.|+ ..+|.+.+-.. ..+.|+.|.-|-
T Consensus 9 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~~~v~V~Y~Gi------------------------lPDlFrEGqgVV 64 (94)
T 2kct_A 9 HTVRLFGTVAADGLTMLDGAPGVRFRLEDKDNTSKTVWVLYKGA------------------------VPDTFKPGVEVI 64 (94)
T ss_dssp CCEEEEEEECSTTCEECTTSSEEEEEEECSSCTTCEEEEEEESC------------------------CCTTCCTTCEEE
T ss_pred CeEEEeeEEeCCeEEecCCCCEEEEEEEcCCCCCcEEEEEECCC------------------------CCccccCCCeEE
Confidence 67889999864 3332 235589999998 67788876332 235789999999
Q ss_pred EEEEeceeCCceEEEEEEEEEcC
Q 043474 111 VRGRIASYRGDVQITVSDVVIEK 133 (160)
Q Consensus 111 V~G~v~~f~~~~qi~~~~i~~v~ 133 (160)
++|++..= ..-+.+..|-.--
T Consensus 65 ~~G~l~~~--~g~F~A~evLaKh 85 (94)
T 2kct_A 65 IEGGLAPG--EDTFKARTLMTKC 85 (94)
T ss_dssp EEEEECTT--CSEEEEEEEEESS
T ss_pred EEEEEeCC--CCEEEEeEEEEeC
Confidence 99997521 2246677765333
No 79
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=83.18 E-value=2.4 Score=33.03 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=42.5
Q ss_pred EeeEEEEEEEEEEeecc---CCceEEEEEe------CC--------CceEEEEEeecC--ccCCCCCCCCCCcccccccc
Q 043474 35 LLSRAEIVGTITSRDHK---PSKFIKFTVD------DG--------TGCVPCVLWLNH--LTSLYLPRRDPSTVRLIAGV 95 (160)
Q Consensus 35 ~i~~v~ivG~V~~~~~~---~~~~~~~~Id------Dg--------TG~I~~~~w~~~--~~~~~~~~~~~~~~~~~~~~ 95 (160)
.+.+|.++|.+..-+-+ ...+..|+|. |+ |--++|++|.+. .+
T Consensus 145 ~lNkV~LiGrL~DPElR~t~G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE------------------ 206 (257)
T 4dni_A 145 SVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE------------------ 206 (257)
T ss_dssp CEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH------------------
T ss_pred ccCEEEEEEEcCCCEEEEeCCcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH------------------
Confidence 37999999999433321 2356677772 22 223899999765 32
Q ss_pred ccccccccccCcEEEEEEEece
Q 043474 96 ATDFAAKIKIGLVARVRGRIAS 117 (160)
Q Consensus 96 ~~~~~~~~~~G~~V~V~G~v~~ 117 (160)
....++.|+.|.|.|+++.
T Consensus 207 ---i~~~L~KG~~V~VeGrL~t 225 (257)
T 4dni_A 207 ---VKQKVKEGNVVCVNGRLRL 225 (257)
T ss_dssp ---HHHHCCTTCEEEEEEEEEE
T ss_pred ---HHhhCCCCCEEEEEEEEEe
Confidence 2345999999999999975
No 80
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=80.48 E-value=8.3 Score=30.17 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=22.2
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCce
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGC 66 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~ 66 (160)
..+-+++.|+.+.........+.+-|||+.
T Consensus 155 ~f~DLv~qVv~v~~~~~~~~~LyVwDgT~~ 184 (294)
T 1xjv_A 155 QYFDLTCQLLGKAEVDGASFLLKVWDGTRT 184 (294)
T ss_dssp CEEEEEEEEEEEEECSSSEEEEEEECSSCC
T ss_pred CeeeEEEEEEEEEecCCCeEEEEEECCCCC
Confidence 567888888877644445578899999974
No 81
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=78.14 E-value=2.8 Score=30.55 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=41.4
Q ss_pred EeeEEEEEEEEEEee---ccCCceEEEEE--e----C-C-------CceEEEEEeecC-ccCCCCCCCCCCccccccccc
Q 043474 35 LLSRAEIVGTITSRD---HKPSKFIKFTV--D----D-G-------TGCVPCVLWLNH-LTSLYLPRRDPSTVRLIAGVA 96 (160)
Q Consensus 35 ~i~~v~ivG~V~~~~---~~~~~~~~~~I--d----D-g-------TG~I~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~ 96 (160)
.+..|.++|.+..-- ..+.....|+| + | . |--+.|++|.+. .+.
T Consensus 21 smNkViLiGrLg~DPElR~t~~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~------------------ 82 (164)
T 3k81_C 21 SVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE------------------ 82 (164)
T ss_dssp CEEEEEEEEEEECCCCEESSSCEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHH------------------
T ss_pred CCcEEEEEEEeccCCEEEEcCccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHH------------------
Confidence 589999999998632 11123334443 3 1 1 334999999875 431
Q ss_pred cccccccccCcEEEEEEEece
Q 043474 97 TDFAAKIKIGLVARVRGRIAS 117 (160)
Q Consensus 97 ~~~~~~~~~G~~V~V~G~v~~ 117 (160)
....++.|+.|.|.|+++.
T Consensus 83 --~~~yL~KGs~V~VeGrL~t 101 (164)
T 3k81_C 83 --VKQKVKEGNVVCVNGRLRL 101 (164)
T ss_dssp --HHHHCCTTCEEEECCEEEE
T ss_pred --HHhhcCCCCEEEEEEEEEe
Confidence 2356899999999999975
No 82
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=77.49 E-value=7 Score=30.38 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=51.2
Q ss_pred CeEeeEEEEEEEEEEeecc---CC--ceEEEEEeCC-------Cc-eEEEEEee-cCccCCCCCCCCCCccccccccccc
Q 043474 33 GKLLSRAEIVGTITSRDHK---PS--KFIKFTVDDG-------TG-CVPCVLWL-NHLTSLYLPRRDPSTVRLIAGVATD 98 (160)
Q Consensus 33 ~~~i~~v~ivG~V~~~~~~---~~--~~~~~~IdDg-------TG-~I~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (160)
-+-+++|.++|.+..-+-+ ++ ..++|.++=. +. -|.|+.|. +..+ .
T Consensus 27 ~r~~N~viLiGrLtrdElRyT~~g~~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE--------------------~ 86 (257)
T 4dni_A 27 WRCVNHCVMLGVVQNIQEGFVFEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSS--------------------R 86 (257)
T ss_dssp SCCSEEEEEEEEEEEEEEEEETTEEEEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHH--------------------H
T ss_pred hhcCcEEEEEEEEeceEEEECCCCCEEEEEEEEEecCCCCCCCcccEEEEEEECCHHHH--------------------H
Confidence 3567899999999876321 11 2234444422 22 36777887 4433 1
Q ss_pred cccccccCcEEEEEEEeceeCCc-------eEEEEEEEEEc
Q 043474 99 FAAKIKIGLVARVRGRIASYRGD-------VQITVSDVVIE 132 (160)
Q Consensus 99 ~~~~~~~G~~V~V~G~v~~f~~~-------~qi~~~~i~~v 132 (160)
....++.|+.|-|.|+|+.|.++ -.+.+.++.|+
T Consensus 87 ~~~yl~kG~~V~VeGrL~~~~~~dG~kr~~~evva~~v~~~ 127 (257)
T 4dni_A 87 VKEQLRDGEWFLVTGRLRMVPQYDGSMRKYYHYPVIQVHPG 127 (257)
T ss_dssp HHHHCCTTCEEEEEEEEEEEEEECSSSSSEEEEEEEEECTT
T ss_pred HHHhccCCCEEEEEEEEEEeECCCCCcEEEEEEEEEEEEec
Confidence 23578999999999999997631 36777777763
No 83
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=75.30 E-value=6.7 Score=27.77 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=17.5
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCc
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTG 65 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG 65 (160)
.-+-++|.|+..-... ..+.+.+-|.|-
T Consensus 15 ~F~Dl~~qVv~~~~~~-~~~~LyVTDYT~ 42 (143)
T 4hik_A 15 QRCSFYAQVIKTWYSD-KNFTLYVTDYTE 42 (143)
T ss_dssp CEEEEEEEEEEEEECS-SCEEEEEECSCC
T ss_pred CeEEEEEEEEEEEcCC-CeEEEEEecCCC
Confidence 4456667777765444 446777777773
No 84
>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}
Probab=61.61 E-value=30 Score=22.40 Aligned_cols=55 Identities=16% Similarity=0.390 Sum_probs=42.6
Q ss_pred cCCceEEEEEeCCCc-eEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEE-EEEEeceeCCceEEEE
Q 043474 51 KPSKFIKFTVDDGTG-CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVAR-VRGRIASYRGDVQITV 126 (160)
Q Consensus 51 ~~~~~~~~~IdDgTG-~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~-V~G~v~~f~~~~qi~~ 126 (160)
..++|...+-.|... .|....|.+.+++ -..++.|.|.. |-|.|+.|.+.+.++.
T Consensus 47 qdskyffitaqdannqeinmsfwqkvdqs---------------------yqtlkvgqyyyfiggevkqfknnlelkf 103 (117)
T 3u4v_A 47 QDSKYFFITAQDANNQEINMSFWQKVDQS---------------------YQTLKVGQYYYFIGGEVKQFKNNLELKF 103 (117)
T ss_dssp TSCEEEEEEEECTTSCEEEEEEESSTHHH---------------------HTTCCTTCEEEEESCEEEEETTEEEEEE
T ss_pred ccccEEEEEeecCCCceechHHHHHhhhh---------------------hheEeeceEEEEEccchhhhccceEEEE
Confidence 445888889999886 5999999887652 25788998655 5567999999887765
No 85
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=45.74 E-value=49 Score=23.70 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=28.4
Q ss_pred EeeEEEEEEEEEEeeccCC-----ceEEEEEeCCCceEEEEEe
Q 043474 35 LLSRAEIVGTITSRDHKPS-----KFIKFTVDDGTGCVPCVLW 72 (160)
Q Consensus 35 ~i~~v~ivG~V~~~~~~~~-----~~~~~~IdDgTG~I~~~~w 72 (160)
....++|-|.|+.+.++-. =-+...|+||||.+++-+=
T Consensus 36 ~~~~~kVKafI~tl~~~l~~~~~~W~l~a~IsDGS~~LdV~f~ 78 (157)
T 3mxn_A 36 EVTTVKVKAFIVTLTGNLSSSGGIWSITAKVSDGTAYLDVDFV 78 (157)
T ss_dssp SCEEEEEEEEEEEECSCCBCGGGSCBCEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEEEEEeccceeecCCEEEEEEEEeCCceeEEEEee
Confidence 4567888888888875431 1268899999999998763
No 86
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=44.46 E-value=68 Score=21.38 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=54.0
Q ss_pred eehhhhhccCCCCCCCceEECCeEeeEEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCcccc
Q 043474 12 LLAFDLLSLTPTPDPATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRL 91 (160)
Q Consensus 12 l~i~~i~~l~~~~~~~~~~~~~~~i~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~ 91 (160)
+|+.||-.+..+ .+|++.|.|.+.. + . .++|.++--++.|-+ +.-
T Consensus 10 ~~Ls~lp~~~~G-------------~KVRFLGCV~sY~--t-g--~L~Le~~~~~v~VDV--~lv--------------- 54 (105)
T 3kf6_B 10 IFINQINDCKDG-------------QKLRFLGCVQSYK--N-G--ILRLIDGSSSVTCDV--TVV--------------- 54 (105)
T ss_dssp CCGGGGGGSCTT-------------CEEEEEEEEEEEE--T-T--EEEEEETTEEEEEEC--TTS---------------
T ss_pred eehhhccCCCCC-------------CEEEEEEEeeeec--c-E--EEEEccCCcEEEEEH--HHh---------------
Confidence 566777775553 7889999999987 2 3 455553322333322 110
Q ss_pred ccccccccccccccCcEEEEEEEeceeCCceEEEEEEEEEcCChhHHHHHHHHHHHH
Q 043474 92 IAGVATDFAAKIKIGLVARVRGRIASYRGDVQITVSDVVIEKDPNMEVLHWLDCLRL 148 (160)
Q Consensus 92 ~~~~~~~~~~~~~~G~~V~V~G~v~~f~~~~qi~~~~i~~v~d~n~~~~h~le~~~~ 148 (160)
+ +.. .++.|.-|-|.|.++.- ..+.+--+.... ...+..+-+++.-
T Consensus 55 L-----~~l-~~~vGeWvNVvGYir~~---v~VqAl~lwsAG--~idl~~Ye~~l~~ 100 (105)
T 3kf6_B 55 L-----PDV-SIQKHEWLNIVGRKRQD---GIVDVLLIRSAV--GINLPRYRQMVSE 100 (105)
T ss_dssp C-----CSS-CCCTTCEEEEEEEEEET---TEEEEEEEEECT--TCCHHHHHHHHHH
T ss_pred h-----chh-eeecccEEEEEEEEecC---cEEEEEEEeecC--CcCHHHHHHHHHH
Confidence 0 011 67899999999999983 455555555544 3334455555543
No 87
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=44.30 E-value=1e+02 Score=26.09 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=25.3
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCceEEEE
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCV 70 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~ 70 (160)
..+-+++.|+.+-........+.+-||||.=..-
T Consensus 222 ~f~DLv~qVv~~~~~d~~~~~L~VwDgT~~~~~~ 255 (495)
T 1jb7_A 222 GDFDVVAKILQVHELDEYTNELKLKDASGQVFYT 255 (495)
T ss_dssp SCEEEEEEEEEEEECSSSEEEEEEEETTCCEEEE
T ss_pred CceeEEEEEeEEeccCCCeEEEEEEeCCCCCcce
Confidence 4578889999887654455799999999974443
No 88
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=43.92 E-value=76 Score=21.77 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=49.6
Q ss_pred EeeEEEEEEEEEEeeccCCceEEEEEeCCCc-----eEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEE
Q 043474 35 LLSRAEIVGTITSRDHKPSKFIKFTVDDGTG-----CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVA 109 (160)
Q Consensus 35 ~i~~v~ivG~V~~~~~~~~~~~~~~IdDgTG-----~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V 109 (160)
.-.+|++.|.|.+....+ ..++|+-... ...+.+|...--+ .. ....+++|..|
T Consensus 22 ~p~kVR~L~QVisYd~~s---a~L~l~~~p~~p~ss~~tv~VdI~~vL~---------------~i---~~~~~~vG~~V 80 (123)
T 3kf8_B 22 NPERLRILAQVKDFIPHE---STIVIDKVPTITSEQSTYINICIFNLLE---------------AC---SSRVLVPGTLV 80 (123)
T ss_dssp BCEEEEEEEEEEEEEGGG---TEEEEECCGGGCCSCCCCEEEECTTTTT---------------TS---CGGGGSTTCEE
T ss_pred CCceEEEEEEEEEEcCCC---cEEEEEecCCCCCCCCeEEEEEHHHHHh---------------hc---CccccccceEE
Confidence 457999999999988765 3666665521 1224445443211 11 33678999999
Q ss_pred EEEEEeceeCCceEEEEEEEEEcCCh
Q 043474 110 RVRGRIASYRGDVQITVSDVVIEKDP 135 (160)
Q Consensus 110 ~V~G~v~~f~~~~qi~~~~i~~v~d~ 135 (160)
-|.|- |.|+ .|.+-.+..+...
T Consensus 81 NI~Gy---ynGe-~i~~i~i~~vNgs 102 (123)
T 3kf8_B 81 NIDAF---YDGE-SINPVDIYEVNGA 102 (123)
T ss_dssp EEEEE---ECSS-CEEEEEEEECCGG
T ss_pred EEEEE---ecCc-cccEEEEEeeccc
Confidence 99997 5654 6777777777644
No 89
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=42.44 E-value=75 Score=22.49 Aligned_cols=55 Identities=16% Similarity=0.386 Sum_probs=42.1
Q ss_pred cCCceEEEEEeCCCc-eEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEE-EEEEeceeCCceEEEE
Q 043474 51 KPSKFIKFTVDDGTG-CVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVAR-VRGRIASYRGDVQITV 126 (160)
Q Consensus 51 ~~~~~~~~~IdDgTG-~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~-V~G~v~~f~~~~qi~~ 126 (160)
..++|...+-.|... .|....|.+.+++ -..++.|.|-. +-|.++.|.+.+.++.
T Consensus 43 qdskyffitaqdannqeinlsfwqkvdqs---------------------yqtlkvgqyyyfiggevkqfknnlelkf 99 (213)
T 3u58_A 43 QDSKYFFITAQDANNQEINLSFWQKVDQS---------------------YQTLKVGQYYYFIGGEVKQFKNNLELKF 99 (213)
T ss_dssp TTCCBEEEEEECTTSCEEEEEECSSHHHH---------------------HHHCCTTCEEEEESCEEEECSSSEEEEE
T ss_pred ccccEEEEEeecCCCceechHHHHHhhhh---------------------hheeeeceEEEEEcccHhhhccceEEEE
Confidence 345888899999886 5999999887641 25788998655 5567999999887765
No 90
>3nbi_A RECQ-mediated genome instability protein 1; OB-fold, RPA-like, protein binding; 2.00A {Homo sapiens}
Probab=41.13 E-value=81 Score=23.61 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=44.8
Q ss_pred ceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEeceeCCceEEEEEEEEEcC
Q 043474 54 KFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIASYRGDVQITVSDVVIEK 133 (160)
Q Consensus 54 ~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~~f~~~~qi~~~~i~~v~ 133 (160)
.-+.+++.||.-.+.|.-+.+-.. ....+.+|.-+.+.|.+...+|-.-|.-.++..+.
T Consensus 136 rmLkL~LtDG~~~i~AiE~~~i~~---------------------l~~~~~pGtKill~~~~~~~~G~llL~~~n~~vLG 194 (216)
T 3nbi_A 136 RMLMLQLTDGIVQIQGMEYQPIPI---------------------LHSDLPPGTKILIYGNISFRLGVLLLKPENVKVLG 194 (216)
T ss_dssp CCEEEEEESSSCEEEEEECSCCTT---------------------CCTTCCTTCEEEEEEEEEEETTEEEECGGGEEEEE
T ss_pred eEEEEEEcCCCeEEEEEEcccchh---------------------cccCCCCCceEEEeCCcEEEeeEEEecCCCEEEEC
Confidence 347899999888777776544322 22357899999999999998998777777777666
Q ss_pred Ch
Q 043474 134 DP 135 (160)
Q Consensus 134 d~ 135 (160)
..
T Consensus 195 G~ 196 (216)
T 3nbi_A 195 GE 196 (216)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 91
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=39.51 E-value=75 Score=21.13 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=22.0
Q ss_pred EEEEEEEeeccCC--ceEEEEEeCCCceEEEE
Q 043474 41 IVGTITSRDHKPS--KFIKFTVDDGTGCVPCV 70 (160)
Q Consensus 41 ivG~V~~~~~~~~--~~~~~~IdDgTG~I~~~ 70 (160)
.||.|++.+..+. +-..+++|.|.+..+.+
T Consensus 18 rVG~I~~~e~hp~adkL~~~~VD~G~~~rqIV 49 (112)
T 2cwp_A 18 KVGLVKKAEKIKRTKKLIKLIVDFGNEERTIV 49 (112)
T ss_dssp EEEEEEEEEECTTCSSCEEEEEECSSCEEEEE
T ss_pred EEEEEEEEEECCCCCccEEEEEEeCCeEEEEE
Confidence 4799999886553 56799999998754444
No 92
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=37.11 E-value=88 Score=20.58 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=22.1
Q ss_pred EEEEEEEeeccCC--ceEEEEEeCCCceEEEE
Q 043474 41 IVGTITSRDHKPS--KFIKFTVDDGTGCVPCV 70 (160)
Q Consensus 41 ivG~V~~~~~~~~--~~~~~~IdDgTG~I~~~ 70 (160)
.||.|++.+..+. +-..+++|.|.+..+.+
T Consensus 14 ~VG~I~~~e~hp~adkL~~~~Vd~G~~~rqIv 45 (107)
T 1mkh_A 14 RVGKIIEVKDHPNADKLYVVKVDLGDEVRTLV 45 (107)
T ss_dssp EEEEEEEEEECTTCSSCEEEEEECSSCEEEEE
T ss_pred EEEEEEEEEECCCCCccEEEEEEeCCeEEEEE
Confidence 4799999886553 56799999998754444
No 93
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=36.74 E-value=59 Score=18.50 Aligned_cols=32 Identities=9% Similarity=0.036 Sum_probs=21.7
Q ss_pred EEEEEEEEeeccCCceEEEEEeCCCceEEEEEe
Q 043474 40 EIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLW 72 (160)
Q Consensus 40 ~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w 72 (160)
.+-|.|.++...+ ....++++-+.|.+.+.+-
T Consensus 8 ~l~g~V~~i~~~g-~~~~v~l~~~~~~l~a~it 39 (67)
T 1fr3_A 8 KLEATVKEIVKGT-VMAKIVMDYKGTELVAAIT 39 (67)
T ss_dssp EEEEEEEEEEECS-SEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEeCC-ceEEEEEEeCCCEEEEEeC
Confidence 3778899988765 4466777655556777664
No 94
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=36.20 E-value=82 Score=21.21 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=22.5
Q ss_pred EEEEEEEeeccCC--ceEEEEEeCCCceEEEE
Q 043474 41 IVGTITSRDHKPS--KFIKFTVDDGTGCVPCV 70 (160)
Q Consensus 41 ivG~V~~~~~~~~--~~~~~~IdDgTG~I~~~ 70 (160)
.||.|++.+..+. +-..+++|.|.+....+
T Consensus 15 rVG~I~~~e~hp~AdKL~~~~VD~G~~~~~iv 46 (118)
T 3ers_X 15 RVGKIVEVKRHENADKLYIVQVDVGQKTLQTV 46 (118)
T ss_dssp EEEEEEEEECCTTCSSCEEEEEECSSSEEEEE
T ss_pred EEEEEEEEEEcCCCCCcEEEEEEcCCcEeeEE
Confidence 4799999986553 55789999999864443
No 95
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=35.39 E-value=21 Score=25.98 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=36.7
Q ss_pred EEEEEeCCCceEEEEEeecCccCCCC--C--CCC--CCcc-ccccccc-c-cc----ccccccCcEEEEEEEeceeCCce
Q 043474 56 IKFTVDDGTGCVPCVLWLNHLTSLYL--P--RRD--PSTV-RLIAGVA-T-DF----AAKIKIGLVARVRGRIASYRGDV 122 (160)
Q Consensus 56 ~~~~IdDgTG~I~~~~w~~~~~~~~~--~--~~~--~~~~-~~~~~~~-~-~~----~~~~~~G~~V~V~G~v~~f~~~~ 122 (160)
+.+.|.|.||.+.+.++.+.....-. + .+- ..++ .-..+.+ . .. ....-.--.++++.+..+|++..
T Consensus 77 l~~~i~D~TG~~wvt~F~e~ae~ilG~~~~~~~~~~A~eL~~~l~e~~~~~~~~~~~~~~~~k~~~frlr~k~e~ynde~ 156 (172)
T 3u50_C 77 LRAFVQDSTGTIPVMIFDQQSSQLINQIDPSIHVQEAGQYVKNCIENGQEEIIRQLFSKLDFARFIFEIQFENKEFNNEQ 156 (172)
T ss_dssp EEEEEEETTEEEEEEECHHHHHHHHHHHCTTSCGGGHHHHHHHHHTTTCHHHHHHHHHTTTTCEEEEEEEEEECC-----
T ss_pred EEEEEEeCCCCEEEEEEhHHHHHHhCCCCCccchhhHHHHHHHHHhcCcHHHHHHHHHhhcCcEEEEEEEEEEcccCCEe
Confidence 78999999999999999765431000 0 000 0000 0000000 0 00 01111224789999999999876
Q ss_pred EE--EEEEEEEcC
Q 043474 123 QI--TVSDVVIEK 133 (160)
Q Consensus 123 qi--~~~~i~~v~ 133 (160)
.+ .+.++.|++
T Consensus 157 Rvr~tv~~~~p~~ 169 (172)
T 3u50_C 157 EIAYKVLKIEKEN 169 (172)
T ss_dssp -EEEEEEEEEEC-
T ss_pred EEEEEEEEeeecC
Confidence 54 666666653
No 96
>2jni_A Arenicin-2; peptide, antimicrobial, beta-sheet, antimicrobial protein; NMR {Arenicola marina} PDB: 2l8x_A 2jsb_A
Probab=34.37 E-value=11 Score=18.19 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=12.9
Q ss_pred cEEEEEEEeceeCCce
Q 043474 107 LVARVRGRIASYRGDV 122 (160)
Q Consensus 107 ~~V~V~G~v~~f~~~~ 122 (160)
.|||++|.+..|+..+
T Consensus 6 ayvrirgvlvryrrcw 21 (26)
T 2jni_A 6 AYVRIRGVLVRYRRCW 21 (26)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EEEEEEEEEEEEEEee
Confidence 6899999998887543
No 97
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=33.25 E-value=95 Score=20.55 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=21.8
Q ss_pred EEEEEEEeeccCC--ceEEEEEeCCCceEEEE
Q 043474 41 IVGTITSRDHKPS--KFIKFTVDDGTGCVPCV 70 (160)
Q Consensus 41 ivG~V~~~~~~~~--~~~~~~IdDgTG~I~~~ 70 (160)
.||.|++.+..+. +-..+++|.|.+..+.+
T Consensus 18 rVG~I~~~e~hp~adkL~~~~Vd~G~~~rqIv 49 (111)
T 1pyb_A 18 RVAKVLSAERVEGSEKLLKLTLSLGDEERTVV 49 (111)
T ss_dssp EEEEEEEEECCSSCSCCEEEEEEETTEEEEEE
T ss_pred EEEEEEEEEECCCCCccEEEEEEeCCcEEEEE
Confidence 4799999886552 55799999998744443
No 98
>1c8c_A DNA-binding protein 7A; protein-DNA interaction, protein stability, hyperthermophIle, achaeabacteria, X-RAY crystallography; 1.45A {Sulfolobus solfataricus} SCOP: b.34.13.1 PDB: 1bnz_A 1bbx_C* 1jic_A 1sso_A 1bf4_A* 2cvr_A 1b4o_A 1azp_A* 1azq_A* 1ca5_A 1ca6_A 1sap_A 1wd0_A 1wd1_A 1wtw_A 1wtx_A 1wtq_A 1wtp_A 1wtv_A 1wtr_A ...
Probab=31.34 E-value=26 Score=20.60 Aligned_cols=15 Identities=47% Similarity=0.725 Sum_probs=12.3
Q ss_pred CCceEEEEEeCCCce
Q 043474 52 PSKFIKFTVDDGTGC 66 (160)
Q Consensus 52 ~~~~~~~~IdDgTG~ 66 (160)
-++.++|+-|||.|.
T Consensus 26 vgkmisftyddgngk 40 (64)
T 1c8c_A 26 VGKMISFTYDEGGGK 40 (64)
T ss_dssp ETTEEEEEEECGGGC
T ss_pred hcceEEEEEecCCCc
Confidence 347799999998884
No 99
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=28.43 E-value=1.3e+02 Score=26.96 Aligned_cols=55 Identities=13% Similarity=0.015 Sum_probs=35.9
Q ss_pred eEeeEEEEEEEEEEeeccCCceEEEEEeCCCceEE-EEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEE
Q 043474 34 KLLSRAEIVGTITSRDHKPSKFIKFTVDDGTGCVP-CVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVR 112 (160)
Q Consensus 34 ~~i~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~ 112 (160)
.+...+-+||.|+.+..+.+..=.+-|.|++..+- .+.|..-.+ + +++|.+|-+.
T Consensus 609 p~~~EvDivG~Vv~v~~~~~~~~~vylsD~~~nll~Ikf~~~l~e-----------------------D-~~~~~~va~s 664 (738)
T 1miu_A 609 PPCSEVDVVGVVVSVVKPIGLAPLVYLSDECLNLLVVKFGIDLNE-----------------------D-IKPRVLIAAS 664 (738)
T ss_dssp TTTTEEEEEEEEEEEECCTTSCCEEEEECSSSCEEEEEESSCCCS-----------------------C-CCSSCEEEEE
T ss_pred CCCCceeEEEEEEEEcccCcccceEEEEcCCCcEEEEEEecCchh-----------------------h-CccccEEEEe
Confidence 35588999999999976443322444678887644 445543221 3 8889888776
No 100
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=26.74 E-value=1.8e+02 Score=20.90 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=23.5
Q ss_pred EEEEEEEEEeeccCC--ceEEEEEeCCCce-EEEEEeecCc
Q 043474 39 AEIVGTITSRDHKPS--KFIKFTVDDGTGC-VPCVLWLNHL 76 (160)
Q Consensus 39 v~ivG~V~~~~~~~~--~~~~~~IdDgTG~-I~~~~w~~~~ 76 (160)
+.++|.|+..-..++ + +.|.+-|..|+ .-..++.-.+
T Consensus 77 ~vv~gKVv~~i~~e~~vP-~~f~~vD~~g~c~avsVYNl~~ 116 (166)
T 2xvs_A 77 AVILGKVVFSLTTEEKVP-FTFGLVDSDGPCYAVMVYNIVQ 116 (166)
T ss_dssp EEEEEEEEEEECCTTCCS-EEEEEESSSSCCEEEEECCCCS
T ss_pred cEEEEEEEEEecCCCCCc-eEEEEECCCCCEEEEEEEeccC
Confidence 446666665554432 6 59999999996 5555554443
No 101
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=26.49 E-value=1.4e+02 Score=19.61 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=39.1
Q ss_pred eEEEEEEEEEEeeccCC----ceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEE
Q 043474 37 SRAEIVGTITSRDHKPS----KFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVR 112 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~----~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~ 112 (160)
++|++-|.|+.+..+.+ -|+..+..|.-...+-++..+-.. .. ...-+.+..|.+..|.
T Consensus 50 kwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgs----------------hn-sadvealsngsvativ 112 (133)
T 3f1z_A 50 KWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGS----------------HN-SADVEALSNGSVATIV 112 (133)
T ss_dssp CEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEG----------------GG-HHHHTTCCTTSEEEEE
T ss_pred ceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccC----------------Cc-chhhHhhcCCceeeEe
Confidence 67888899999886552 556667766543211111111000 00 0022567899999999
Q ss_pred EEeceeCC
Q 043474 113 GRIASYRG 120 (160)
Q Consensus 113 G~v~~f~~ 120 (160)
|.+..-++
T Consensus 113 gqvhqvqd 120 (133)
T 3f1z_A 113 GQVHQVQD 120 (133)
T ss_dssp EECCCCCS
T ss_pred eeeeeeec
Confidence 99876554
No 102
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=26.07 E-value=1.6e+02 Score=24.69 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=27.9
Q ss_pred EEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEEEEece
Q 043474 57 KFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVRGRIAS 117 (160)
Q Consensus 57 ~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~G~v~~ 117 (160)
.+.|+|.||.|.+.. .. ....+-.|.+|-|.|+...
T Consensus 139 ~l~LEDesGRv~L~g----~~---------------------~~~~lVTG~VvaV~G~~~~ 174 (476)
T 3e0j_A 139 ELVLEDELQRIKLKG----TI---------------------DVSKLVTGTVLAVFGSVRD 174 (476)
T ss_dssp EEEEECSSCEEEEEE----SC---------------------CTTTCCTTCEEEEEEEECT
T ss_pred eEEEECCCCEEEEEE----Ec---------------------ccccccCCcEEEEEEEEcC
Confidence 699999999998875 11 1145778999999998764
No 103
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=25.37 E-value=1.1e+02 Score=18.22 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=18.6
Q ss_pred EEEEEEEEEeeccCCceEEEEEeCCCceEEEEEee
Q 043474 39 AEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWL 73 (160)
Q Consensus 39 v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~ 73 (160)
+.+-|.|+..... .+....++|| ..+.|.+-.
T Consensus 6 ~~~~G~Vi~~lg~--~~y~V~~~~g-~~~~~~i~G 37 (71)
T 1ah9_A 6 IEMQGTVLETLPN--TMFRVELENG-HVVTAHISG 37 (71)
T ss_dssp EECCEEEEEECSS--SEEEEEETTS-CEEEEEECS
T ss_pred eEEEEEEEEEeCC--cEEEEEECCC-CEEEEEEcc
Confidence 3456888875543 3334455565 468888743
No 104
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=25.22 E-value=1.3e+02 Score=18.78 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=31.6
Q ss_pred EEEEEEEEEEeeccCCceEEEEEeCCCceEEEEEeecCccCCCCCCCCCCccccccccccccccccccCcEEEEE
Q 043474 38 RAEIVGTITSRDHKPSKFIKFTVDDGTGCVPCVLWLNHLTSLYLPRRDPSTVRLIAGVATDFAAKIKIGLVARVR 112 (160)
Q Consensus 38 ~v~ivG~V~~~~~~~~~~~~~~IdDgTG~I~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V~V~ 112 (160)
.+++-|.|+..-.. .++...++||. .+.|++-..--. ..-.+-+||.|.|.
T Consensus 13 ~ie~~G~Vik~l~n--~~f~V~l~nG~-~~~c~i~GK~Rk---------------------~~I~Il~GD~V~ve 63 (79)
T 3i4o_A 13 AIEVEGRVVEPLPN--AMFRIELENGH-KVLAHISGKMRQ---------------------HYIRILPEDRVVVE 63 (79)
T ss_dssp CSEEEEEEEEEETT--TEEEEEETTSC-EEEEEECHHHHH---------------------TTCCCCTTCEEEEE
T ss_pred eEEEEEEEEEEcCC--CEEEEEeCCCC-EEEEEeCcceec---------------------CCccCCCCCEEEEE
Confidence 45677888886544 44577777743 577876432211 12357789999875
No 105
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4
Probab=23.53 E-value=1.2e+02 Score=20.11 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=23.3
Q ss_pred EEEEEEEeeccCC--c-eEEEEEeCCC-ceEEEEEe
Q 043474 41 IVGTITSRDHKPS--K-FIKFTVDDGT-GCVPCVLW 72 (160)
Q Consensus 41 ivG~V~~~~~~~~--~-~~~~~IdDgT-G~I~~~~w 72 (160)
.||.|++.+..+. + -..+++|.|. +..+++..
T Consensus 16 rVG~I~~~e~hp~adkpL~~~~Vd~G~~~~~qIv~G 51 (112)
T 3g48_A 16 RIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQ 51 (112)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEECGGGCEEEEEEC
T ss_pred EEEEEEEEEECCCCCCeEEEEEEEcCCCcEEEEEeC
Confidence 5788998886542 4 6789999998 45666654
No 106
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X
Probab=22.10 E-value=1.3e+02 Score=19.79 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=21.9
Q ss_pred EEEEEEEeeccCC--ceEEEEEeCCCceEEEE
Q 043474 41 IVGTITSRDHKPS--KFIKFTVDDGTGCVPCV 70 (160)
Q Consensus 41 ivG~V~~~~~~~~--~~~~~~IdDgTG~I~~~ 70 (160)
.||.|++.+..+. +-..+++|.|.+..+.+
T Consensus 15 rVG~I~~~e~hp~adkL~v~~Vd~G~~~~qiv 46 (111)
T 1pxf_A 15 RVGKIVEVKRHENADKLYIVQVDVGQKTLQTV 46 (111)
T ss_dssp EEEEEEEEECCTTCTTCCEEEEEETTEEEEEE
T ss_pred EEEEEEEEEECCCCCeEEEEEEEeCCCceEEE
Confidence 5899999887653 45688999997654444
No 107
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=21.94 E-value=1.7e+02 Score=22.00 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=24.2
Q ss_pred ccccccCcEEEEEEEeceeCC-----------ceEEEEEEEEEcC
Q 043474 100 AAKIKIGLVARVRGRIASYRG-----------DVQITVSDVVIEK 133 (160)
Q Consensus 100 ~~~~~~G~~V~V~G~v~~f~~-----------~~qi~~~~i~~v~ 133 (160)
.+..++|+.|.|.|.++.... +..|.+.+|....
T Consensus 222 vd~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 222 VDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp TTSSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC-
T ss_pred cCcccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEec
Confidence 467899999999999976432 2356777777543
No 108
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=21.08 E-value=1.8e+02 Score=19.04 Aligned_cols=30 Identities=23% Similarity=0.160 Sum_probs=21.3
Q ss_pred EEEEEEEeeccCC--ce-EEEEEeCCCc-eEEEE
Q 043474 41 IVGTITSRDHKPS--KF-IKFTVDDGTG-CVPCV 70 (160)
Q Consensus 41 ivG~V~~~~~~~~--~~-~~~~IdDgTG-~I~~~ 70 (160)
.||.|++.+..+. +- ..+++|.|.+ ..+.+
T Consensus 13 ~VG~I~~~e~hp~adkL~~~~~Vd~G~~~~rqIv 46 (109)
T 1gd7_A 13 RVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSS 46 (109)
T ss_dssp EEEEEEEEEECTTCSSCCEEEEEECGGGCEEEEE
T ss_pred EEEEEEEEEECCCCccccEEEEEEcCCCcEEEEE
Confidence 4799999886553 54 6899999974 44443
No 109
>1s1d_A Apyrase; adpase, five-blade beta propeller, calcium-binding protein, nucleotide-binding motif, hydrolase; HET: GP2; 1.60A {Homo sapiens} SCOP: b.67.3.1 PDB: 1s18_A* 2h2n_A 2h2u_A
Probab=20.84 E-value=45 Score=26.79 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=10.5
Q ss_pred EEEEEeCCCceEE
Q 043474 56 IKFTVDDGTGCVP 68 (160)
Q Consensus 56 ~~~~IdDgTG~I~ 68 (160)
-.|++||+||.|-
T Consensus 106 kLyt~DDRTGiVy 118 (331)
T 1s1d_A 106 KLYSVDDRTGVVY 118 (331)
T ss_dssp EEEEEETTTCEEE
T ss_pred EEeeeeCCCceEE
Confidence 3799999999743
No 110
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=20.44 E-value=1.3e+02 Score=21.36 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=17.1
Q ss_pred eEEEEEEEEEEeeccCCceEEEEEeCCCce
Q 043474 37 SRAEIVGTITSRDHKPSKFIKFTVDDGTGC 66 (160)
Q Consensus 37 ~~v~ivG~V~~~~~~~~~~~~~~IdDgTG~ 66 (160)
--+.++|..-+..... .......||+|..
T Consensus 24 YPATcvg~~~~~~~~~-~~y~VrFdDs~~~ 52 (153)
T 2fhd_A 24 YPATLVAPVHSAVTSS-IMYKVQFDDATMS 52 (153)
T ss_dssp EEEEEEEEECCSSCCB-CEEEEEETTSCEE
T ss_pred cceEEEccCCCcccCC-eEEEEEEcCCCCC
Confidence 4566677664421122 3458888999765
No 111
>3i84_A Cervical EMMPRIN; CD147, dimerization, cell adhesion, beta-strand swapping; 2.00A {Homo sapiens} PDB: 3i85_A
Probab=20.41 E-value=1.8e+02 Score=18.74 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=24.9
Q ss_pred CceEECCeEeeEEEEEEEEEEeeccCCceEEEEEe--CCCceEEEEEe
Q 043474 27 ATFSRSGKLLSRAEIVGTITSRDHKPSKFIKFTVD--DGTGCVPCVLW 72 (160)
Q Consensus 27 ~~~~~~~~~i~~v~ivG~V~~~~~~~~~~~~~~Id--DgTG~I~~~~w 72 (160)
..|+.+|+.+..- ..+..+..|+|+ |.+|.-.|++.
T Consensus 41 ~~W~kng~~L~~~----------~~~~~~t~y~Id~~~dSGeY~Cvf~ 78 (98)
T 3i84_A 41 HRWLKGGVVLKED----------ALPGQKTEFKVDSDDQWGEYSCVFL 78 (98)
T ss_dssp EEEEETTEEEEEE----------CCCCSEEEEEECGGGCCEEEEEEEE
T ss_pred CEEeECCEECccc----------cCCCCccEEEEeccccCEeEEEEEC
Confidence 3577888877653 222356788884 67899999964
Done!