Query 043478
Match_columns 145
No_of_seqs 190 out of 562
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:01:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 8.4E-16 2.9E-20 107.2 5.0 51 94-144 6-60 (82)
2 1an4_A Protein (upstream stimu 99.5 1.6E-15 5.5E-20 101.0 3.2 50 95-144 6-64 (65)
3 4h10_B Circadian locomoter out 99.5 7.2E-15 2.5E-19 101.0 5.9 50 94-143 8-61 (71)
4 1a0a_A BHLH, protein (phosphat 99.5 5E-15 1.7E-19 99.1 2.1 51 95-145 3-63 (63)
5 1nkp_A C-MYC, MYC proto-oncoge 99.5 2.1E-14 7.3E-19 101.5 4.3 52 93-144 5-62 (88)
6 1nkp_B MAX protein, MYC proto- 99.5 2.9E-14 9.9E-19 98.9 4.6 50 95-144 3-57 (83)
7 1hlo_A Protein (transcription 99.5 3.5E-14 1.2E-18 98.1 4.4 53 92-144 10-67 (80)
8 4ati_A MITF, microphthalmia-as 99.5 5.6E-14 1.9E-18 104.1 5.7 51 94-144 27-84 (118)
9 4h10_A ARYL hydrocarbon recept 99.4 2.4E-14 8.3E-19 98.5 2.6 48 94-141 9-63 (73)
10 3u5v_A Protein MAX, transcript 99.3 3.9E-13 1.3E-17 93.1 2.9 53 93-145 4-63 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 1.9E-12 6.4E-17 90.2 6.2 50 95-144 2-57 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.2 1.2E-11 4.1E-16 84.0 5.4 54 92-145 10-68 (68)
13 2ql2_B Neurod1, neurogenic dif 99.1 9.6E-11 3.3E-15 77.7 6.2 51 95-145 3-59 (60)
14 4f3l_A Mclock, circadian locom 99.0 3.1E-10 1E-14 94.7 5.0 49 94-142 12-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 1.7E-09 5.8E-14 91.3 4.8 48 94-141 13-67 (387)
16 2lfh_A DNA-binding protein inh 98.6 2.1E-08 7.2E-13 68.4 3.0 42 100-141 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 1.6E-06 5.5E-11 61.1 4.6 38 107-144 8-49 (83)
18 4aya_A DNA-binding protein inh 98.0 8.9E-06 3.1E-10 58.7 5.6 39 107-145 41-82 (97)
19 1xkm_B Distinctin chain B; por 43.7 22 0.00077 19.2 2.7 19 126-144 3-21 (26)
20 1pd7_B MAD1; PAH2, SIN3, eukar 39.5 32 0.0011 18.9 2.9 23 122-144 1-23 (26)
21 2cqn_A Formin-binding protein 32.5 59 0.002 21.5 4.0 23 102-124 6-30 (77)
22 1m2x_A Class B carbapenemase B 24.7 36 0.0012 24.9 2.1 21 125-145 201-221 (223)
23 2fhx_A SPM-1; metallo-beta-lac 23.5 43 0.0015 24.7 2.3 29 116-144 217-245 (246)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.59 E-value=8.4e-16 Score=107.22 Aligned_cols=51 Identities=24% Similarity=0.450 Sum_probs=48.3
Q ss_pred hhhhhhhHHHHhH---HHhHHHHHhcCCCC-CCcchhhhHHHHHHHHHHHHHHhh
Q 043478 94 FCEEHVSLDKRTK---NEKFMLLRSVVPYI-SEVDKASILNDTIKYLKRLKARVE 144 (145)
Q Consensus 94 ~~~~h~~~ERrRR---ne~f~~LrslvP~~-~K~dKaSIL~daI~Yik~Lq~~V~ 144 (145)
...+|+.+||+|| |++|..|+++||+. .|+|||+||.+||+||++|+.+++
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~ 60 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQ 60 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999 99999999999998 899999999999999999999886
No 2
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=1.6e-15 Score=100.96 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=46.2
Q ss_pred hhhhhhHHHHhH---HHhHHHHHhcCCCCC------CcchhhhHHHHHHHHHHHHHHhh
Q 043478 95 CEEHVSLDKRTK---NEKFMLLRSVVPYIS------EVDKASILNDTIKYLKRLKARVE 144 (145)
Q Consensus 95 ~~~h~~~ERrRR---ne~f~~LrslvP~~~------K~dKaSIL~daI~Yik~Lq~~V~ 144 (145)
..+|+.+||+|| |+.|..|++|||.+. |++|++||.+||+||++||++.+
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999 999999999999874 78999999999999999998765
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.54 E-value=7.2e-15 Score=100.97 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=46.7
Q ss_pred hhhhhhhHHHHhH---HHhHHHHHhcCCCC-CCcchhhhHHHHHHHHHHHHHHh
Q 043478 94 FCEEHVSLDKRTK---NEKFMLLRSVVPYI-SEVDKASILNDTIKYLKRLKARV 143 (145)
Q Consensus 94 ~~~~h~~~ERrRR---ne~f~~LrslvP~~-~K~dKaSIL~daI~Yik~Lq~~V 143 (145)
...+|+++||+|| |++|..|++|||.. .|+||++||..||+||++||+++
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~ 61 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEIT 61 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999 99999999999975 69999999999999999999986
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.49 E-value=5e-15 Score=99.13 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=45.9
Q ss_pred hhhhhhHHHHhH---HHhHHHHHhcCCCC-------CCcchhhhHHHHHHHHHHHHHHhhC
Q 043478 95 CEEHVSLDKRTK---NEKFMLLRSVVPYI-------SEVDKASILNDTIKYLKRLKARVEE 145 (145)
Q Consensus 95 ~~~h~~~ERrRR---ne~f~~LrslvP~~-------~K~dKaSIL~daI~Yik~Lq~~V~e 145 (145)
..+|.++||+|| |..|..|++|||.+ +|..||+||+.||+||++||++|+.
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~~ 63 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST 63 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSCC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhhC
Confidence 468999999999 99999999999954 5667999999999999999998863
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=2.1e-14 Score=101.52 Aligned_cols=52 Identities=21% Similarity=0.400 Sum_probs=47.5
Q ss_pred chhhhhhhHHHHhH---HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHHHhh
Q 043478 93 NFCEEHVSLDKRTK---NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKARVE 144 (145)
Q Consensus 93 ~~~~~h~~~ERrRR---ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~~V~ 144 (145)
+.+..|+..||+|| |+.|..|+.+||.+ .|++|++||.+||+||++|+.+.+
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~ 62 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999 99999999999976 599999999999999999998754
No 6
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.47 E-value=2.9e-14 Score=98.92 Aligned_cols=50 Identities=22% Similarity=0.536 Sum_probs=46.6
Q ss_pred hhhhhhHHHHhH---HHhHHHHHhcCCCC--CCcchhhhHHHHHHHHHHHHHHhh
Q 043478 95 CEEHVSLDKRTK---NEKFMLLRSVVPYI--SEVDKASILNDTIKYLKRLKARVE 144 (145)
Q Consensus 95 ~~~h~~~ERrRR---ne~f~~LrslvP~~--~K~dKaSIL~daI~Yik~Lq~~V~ 144 (145)
...|+..||+|| |+.|..|+++||.+ .|++|++||..||+||+.|+.+++
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~ 57 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNH 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999 99999999999974 899999999999999999998765
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=3.5e-14 Score=98.12 Aligned_cols=53 Identities=21% Similarity=0.499 Sum_probs=48.8
Q ss_pred cchhhhhhhHHHHhH---HHhHHHHHhcCCCC--CCcchhhhHHHHHHHHHHHHHHhh
Q 043478 92 ENFCEEHVSLDKRTK---NEKFMLLRSVVPYI--SEVDKASILNDTIKYLKRLKARVE 144 (145)
Q Consensus 92 ~~~~~~h~~~ERrRR---ne~f~~LrslvP~~--~K~dKaSIL~daI~Yik~Lq~~V~ 144 (145)
......|+..||+|| |+.|..|+++||.+ .|++|++||..||+||+.|+++++
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~ 67 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNH 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999 99999999999976 699999999999999999999876
No 8
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.46 E-value=5.6e-14 Score=104.10 Aligned_cols=51 Identities=20% Similarity=0.490 Sum_probs=43.8
Q ss_pred hhhhhhhHHHHhH---HHhHHHHHhcCCCCC----CcchhhhHHHHHHHHHHHHHHhh
Q 043478 94 FCEEHVSLDKRTK---NEKFMLLRSVVPYIS----EVDKASILNDTIKYLKRLKARVE 144 (145)
Q Consensus 94 ~~~~h~~~ERrRR---ne~f~~LrslvP~~~----K~dKaSIL~daI~Yik~Lq~~V~ 144 (145)
...+|+++||+|| |++|..|++|||.+. |++|++||.+||+||++||++++
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~ 84 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 84 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999 999999999999773 78899999999999999998875
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=2.4e-14 Score=98.55 Aligned_cols=48 Identities=29% Similarity=0.438 Sum_probs=44.1
Q ss_pred hhhhhhhHHHHhH---HHhHHHHHhcCCCC----CCcchhhhHHHHHHHHHHHHH
Q 043478 94 FCEEHVSLDKRTK---NEKFMLLRSVVPYI----SEVDKASILNDTIKYLKRLKA 141 (145)
Q Consensus 94 ~~~~h~~~ERrRR---ne~f~~LrslvP~~----~K~dKaSIL~daI~Yik~Lq~ 141 (145)
...+|+.+||+|| |+.|..|++|||.+ .|+|||+||..||+||+.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 3568999999999 99999999999965 799999999999999999973
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.33 E-value=3.9e-13 Score=93.06 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=43.6
Q ss_pred chhhhhhhHHHHhH---HHhHHHHHhcCCC---CCCc-chhhhHHHHHHHHHHHHHHhhC
Q 043478 93 NFCEEHVSLDKRTK---NEKFMLLRSVVPY---ISEV-DKASILNDTIKYLKRLKARVEE 145 (145)
Q Consensus 93 ~~~~~h~~~ERrRR---ne~f~~LrslvP~---~~K~-dKaSIL~daI~Yik~Lq~~V~e 145 (145)
+.+..|+..||+|| |+.|..|+.+||. ..|. .|++||..||+||+.|+++++|
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e 63 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRE 63 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999 9999999999994 3555 6889999999999999999975
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.33 E-value=1.9e-12 Score=90.20 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=45.8
Q ss_pred hhhhhhHHHHhH---HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHHHhh
Q 043478 95 CEEHVSLDKRTK---NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKARVE 144 (145)
Q Consensus 95 ~~~h~~~ERrRR---ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~~V~ 144 (145)
...|+..||+|| |+.|..|+++||.+ .|+.|++||..|++||++|+.+.+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~ 57 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999 99999999999965 788999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.22 E-value=1.2e-11 Score=84.02 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=48.8
Q ss_pred cchhhhhhhHHHHhH---HHhHHHHHhcCCCC--CCcchhhhHHHHHHHHHHHHHHhhC
Q 043478 92 ENFCEEHVSLDKRTK---NEKFMLLRSVVPYI--SEVDKASILNDTIKYLKRLKARVEE 145 (145)
Q Consensus 92 ~~~~~~h~~~ERrRR---ne~f~~LrslvP~~--~K~dKaSIL~daI~Yik~Lq~~V~e 145 (145)
......|+..||+|+ |+.|..||.+||.. .|+.|+.||..||+||..|++.+++
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~~ 68 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 345678999999999 99999999999965 7999999999999999999998865
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.13 E-value=9.6e-11 Score=77.66 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=46.2
Q ss_pred hhhhhhHHHHhH---HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHHHhhC
Q 043478 95 CEEHVSLDKRTK---NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKARVEE 145 (145)
Q Consensus 95 ~~~h~~~ERrRR---ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~~V~e 145 (145)
...|+..||+|+ |+.|..||.+||.. .|+.|+.||..||+||..|++.+++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 59 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 456899999999 99999999999965 5899999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.99 E-value=3.1e-10 Score=94.65 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=39.4
Q ss_pred hhhhhhhHHHHhH---HHhHHHHHhcCC-CCCCcchhhhHHHHHHHHHHHHHH
Q 043478 94 FCEEHVSLDKRTK---NEKFMLLRSVVP-YISEVDKASILNDTIKYLKRLKAR 142 (145)
Q Consensus 94 ~~~~h~~~ERrRR---ne~f~~LrslvP-~~~K~dKaSIL~daI~Yik~Lq~~ 142 (145)
...+|+.+||||| |+.|..|++||| ...|+||++||..||.|||.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3568999999999 999999999999 558999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.85 E-value=1.7e-09 Score=91.35 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=44.6
Q ss_pred hhhhhhhHHHHhH---HHhHHHHHhcCC----CCCCcchhhhHHHHHHHHHHHHH
Q 043478 94 FCEEHVSLDKRTK---NEKFMLLRSVVP----YISEVDKASILNDTIKYLKRLKA 141 (145)
Q Consensus 94 ~~~~h~~~ERrRR---ne~f~~LrslvP----~~~K~dKaSIL~daI~Yik~Lq~ 141 (145)
...+|+.+||||| |+.|..|++||| ...|+||+|||..||.|||.|+.
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 4678999999999 999999999999 56899999999999999999974
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.60 E-value=2.1e-08 Score=68.36 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=37.4
Q ss_pred hHHHHhH---HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHH
Q 043478 100 SLDKRTK---NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKA 141 (145)
Q Consensus 100 ~~ERrRR---ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~ 141 (145)
..||+|. |+-|..||.+||.. .|+.|+-||.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4577776 99999999999976 689999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.19 E-value=1.6e-06 Score=61.05 Aligned_cols=38 Identities=21% Similarity=0.510 Sum_probs=34.2
Q ss_pred HHhHHHHHhcCCCC----CCcchhhhHHHHHHHHHHHHHHhh
Q 043478 107 NEKFMLLRSVVPYI----SEVDKASILNDTIKYLKRLKARVE 144 (145)
Q Consensus 107 ne~f~~LrslvP~~----~K~dKaSIL~daI~Yik~Lq~~V~ 144 (145)
|+++..|..|||.. .|.+|++||..|++||+.||+.++
T Consensus 8 N~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~ 49 (83)
T 4ath_A 8 NDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 49 (83)
T ss_dssp HHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999964 589999999999999999987653
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.00 E-value=8.9e-06 Score=58.68 Aligned_cols=39 Identities=31% Similarity=0.561 Sum_probs=35.7
Q ss_pred HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHHHhhC
Q 043478 107 NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKARVEE 145 (145)
Q Consensus 107 ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~~V~e 145 (145)
|+-|..||.+||.. .|+.|+-+|.-||+||..|++-+++
T Consensus 41 N~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 41 NDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999965 6899999999999999999987754
No 19
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=43.69 E-value=22 Score=19.23 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 043478 126 ASILNDTIKYLKRLKARVE 144 (145)
Q Consensus 126 aSIL~daI~Yik~Lq~~V~ 144 (145)
+|-|-+|-+|+.+|.++++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 5678899999999988764
No 20
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=39.50 E-value=32 Score=18.95 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=18.4
Q ss_pred CcchhhhHHHHHHHHHHHHHHhh
Q 043478 122 EVDKASILNDTIKYLKRLKARVE 144 (145)
Q Consensus 122 K~dKaSIL~daI~Yik~Lq~~V~ 144 (145)
|++.+-+|=+|-+|+...+++.+
T Consensus 1 ~~~nvq~LLeAAeyLErrEre~E 23 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERREREAE 23 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhhh
Confidence 45678889999999998887653
No 21
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=32.51 E-value=59 Score=21.51 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=14.1
Q ss_pred HHHhH--HHhHHHHHhcCCCCCCcc
Q 043478 102 DKRTK--NEKFMLLRSVVPYISEVD 124 (145)
Q Consensus 102 ERrRR--ne~f~~LrslvP~~~K~d 124 (145)
.|.|| .+-...|+..-|.++..+
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s 30 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDA 30 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 45555 666667787767654433
No 22
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=24.66 E-value=36 Score=24.88 Aligned_cols=21 Identities=5% Similarity=0.251 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhC
Q 043478 125 KASILNDTIKYLKRLKARVEE 145 (145)
Q Consensus 125 KaSIL~daI~Yik~Lq~~V~e 145 (145)
....|..+++|++.++++|+.
T Consensus 201 ~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 201 DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp STTHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999863
No 23
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=23.54 E-value=43 Score=24.69 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=21.2
Q ss_pred cCCCCCCcchhhhHHHHHHHHHHHHHHhh
Q 043478 116 VVPYISEVDKASILNDTIKYLKRLKARVE 144 (145)
Q Consensus 116 lvP~~~K~dKaSIL~daI~Yik~Lq~~V~ 144 (145)
++|+=...-....+..+++|++.|+++|.
T Consensus 217 i~pgHg~~~~~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 217 VIPGHGEWGGPEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp EEESBSCCBSTHHHHHHHHHHHHHHHHHT
T ss_pred EECCCCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 44533333335789999999999999985
Done!