Your job contains 1 sequence.
>043479
VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV
IMKALASGVAFYILKPLNPDDLKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDD
IVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKKPKVAWTDSLHNRFLQAIRHIG
LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAEQGASAMGKTLALRSSFASGHV
SMMLQEAHEFSQVRDQQQQMRTSAFLPGYASGVSALNGTTFGSIGFPSLGASSSSSVPQP
GLMGNQANFPQSLFGNTRNPLYQANSAGKTCGSSGSNATEANPLSRGGLAAGLMNQMYQQ
KSQLRPNPYDNYNIGASSSKGFGTSGWSSSSNTSGLDQNMGTIKNNTYSNYAGIRLNDDG
ELIPAGQTSLINGNGLNGGYGFISGTSGIMANAAFGHLTPGASSSSARFDNATYQIPSAF
AGVNEQENTSMLSQLSSQQQYGPGNNAQNDFTNFAPINNASVNGNTAQPERLGE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043479
(534 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 404 3.3e-39 2
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 401 1.0e-36 1
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 367 9.5e-34 1
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 332 1.0e-29 1
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 239 1.5e-29 2
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 330 3.5e-29 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 283 1.5e-24 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 283 1.5e-24 1
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 258 1.0e-21 1
TAIR|locus:2058445 - symbol:MYBC1 "AT2G40970" species:370... 217 3.4e-17 1
TAIR|locus:2175364 - symbol:AT5G05090 "AT5G05090" species... 217 3.4e-17 1
TAIR|locus:2148348 - symbol:BOA "AT5G59570" species:3702 ... 217 1.0e-16 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 168 2.8e-16 2
TAIR|locus:2103247 - symbol:AT3G10760 "AT3G10760" species... 221 4.4e-16 1
TAIR|locus:2167639 - symbol:GLK2 "AT5G44190" species:3702... 206 5.9e-14 1
UNIPROTKB|Q5Z5I4 - symbol:GLK1 "Probable transcription fa... 206 9.7e-14 1
TAIR|locus:2174063 - symbol:RR23 "response regulator 23" ... 129 2.4e-12 2
TAIR|locus:2199342 - symbol:APRR6 "pseudo-response regula... 124 1.6e-09 2
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 145 2.4e-09 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 144 3.1e-09 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 143 4.0e-09 1
TAIR|locus:2172394 - symbol:MYR1 "myb-related protein 1" ... 163 4.9e-09 1
UNIPROTKB|P71403 - symbol:cheY "Chemotaxis protein CheY h... 139 1.1e-08 1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 139 1.1e-08 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 139 1.1e-08 1
TAIR|locus:2087740 - symbol:AT3G12730 species:3702 "Arabi... 152 1.2e-08 1
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 137 1.8e-08 1
TAIR|locus:2205339 - symbol:HRS1 "HYPERSENSITIVITY TO LOW... 157 1.9e-08 2
TAIR|locus:2095933 - symbol:MYR2 species:3702 "Arabidopsi... 157 2.2e-08 1
TAIR|locus:2093726 - symbol:AT3G24120 species:3702 "Arabi... 152 3.8e-08 1
TAIR|locus:2157146 - symbol:AT5G45580 species:3702 "Arabi... 149 4.0e-08 2
TAIR|locus:2125771 - symbol:AT4G04580 "AT4G04580" species... 133 4.8e-08 1
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 132 6.1e-08 1
UNIPROTKB|Q74AX6 - symbol:cheY40H-1 "Response receiver Ch... 132 6.1e-08 1
TIGR_CMR|GSU_2223 - symbol:GSU_2223 "chemotaxis protein C... 132 6.1e-08 1
UNIPROTKB|Q9KS62 - symbol:VC_1398 "Chemotaxis protein Che... 129 1.3e-07 1
TIGR_CMR|VC_1398 - symbol:VC_1398 "chemotaxis protein Che... 129 1.3e-07 1
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 147 1.3e-07 2
TIGR_CMR|CPS_1520 - symbol:CPS_1520 "chemotaxis protein C... 127 2.1e-07 1
TIGR_CMR|SO_3209 - symbol:SO_3209 "chemotaxis protein Che... 127 2.1e-07 1
TAIR|locus:2045761 - symbol:AT2G01060 species:3702 "Arabi... 145 2.1e-07 1
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 126 2.7e-07 1
TAIR|locus:2026739 - symbol:AT1G69580 species:3702 "Arabi... 145 3.4e-07 1
TAIR|locus:2119425 - symbol:UNE16 "unfertilized embryo sa... 144 3.4e-07 2
TAIR|locus:2042927 - symbol:AT2G38300 "AT2G38300" species... 145 3.4e-07 1
UNIPROTKB|Q4GZK4 - symbol:rr7 "Type A response regulator ... 137 3.5e-07 1
TAIR|locus:2026863 - symbol:AT1G68670 species:3702 "Arabi... 145 3.8e-07 1
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 124 4.5e-07 1
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C... 124 4.5e-07 1
TIGR_CMR|GSU_0403 - symbol:GSU_0403 "chemotaxis protein C... 124 4.5e-07 1
TAIR|locus:2148720 - symbol:PHL1 "AT5G29000" species:3702... 145 5.2e-07 1
TAIR|locus:2163852 - symbol:ATS "AT5G42630" species:3702 ... 141 5.5e-07 1
TAIR|locus:2063746 - symbol:AT2G03500 "AT2G03500" species... 144 7.3e-07 1
UNIPROTKB|Q74DM7 - symbol:cheY34H-1 "Response receiver Ch... 122 7.4e-07 1
TIGR_CMR|GSU_1289 - symbol:GSU_1289 "chemotaxis protein C... 122 7.4e-07 1
TIGR_CMR|GSU_3198 - symbol:GSU_3198 "chemotaxis protein C... 122 7.4e-07 1
TAIR|locus:2102509 - symbol:RR17 "response regulator 17" ... 122 7.4e-07 1
TAIR|locus:2031210 - symbol:AT1G25550 species:3702 "Arabi... 142 7.7e-07 1
TAIR|locus:2089260 - symbol:AT3G13040 species:3702 "Arabi... 144 7.8e-07 1
TAIR|locus:2206415 - symbol:APL "ALTERED PHLOEM DEVELOPME... 142 8.4e-07 1
TAIR|locus:2171427 - symbol:KAN "KANADI" species:3702 "Ar... 142 1.1e-06 1
TIGR_CMR|GSU_0104 - symbol:GSU_0104 "response regulator, ... 120 1.2e-06 1
TAIR|locus:2085984 - symbol:AT3G25790 species:3702 "Arabi... 140 1.4e-06 1
UNIPROTKB|Q3ADB1 - symbol:cheY1 "Chemotaxis protein CheY"... 119 1.6e-06 1
TIGR_CMR|CHY_1026 - symbol:CHY_1026 "chemotaxis protein C... 119 1.6e-06 1
TIGR_CMR|GSU_0008 - symbol:GSU_0008 "sensory box histidin... 141 2.1e-06 1
TAIR|locus:2100880 - symbol:AT3G04450 species:3702 "Arabi... 140 2.1e-06 1
TIGR_CMR|BA_5661 - symbol:BA_5661 "DNA-binding response r... 132 2.2e-06 1
TAIR|locus:2028346 - symbol:KAN2 "AT1G32240" species:3702... 138 2.7e-06 1
TAIR|locus:2025911 - symbol:ARR3 "response regulator 3" s... 132 3.2e-06 1
TIGR_CMR|GSU_2693 - symbol:GSU_2693 "response regulator" ... 116 3.3e-06 1
TIGR_CMR|GSU_2581 - symbol:GSU_2581 "sigma-54 dependent t... 137 4.8e-06 1
TAIR|locus:2063141 - symbol:AT2G40260 "AT2G40260" species... 136 5.1e-06 1
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 114 5.4e-06 1
UNIPROTKB|Q9KSH9 - symbol:VC_1277 "Transcriptional regula... 128 7.0e-06 1
TIGR_CMR|VC_1277 - symbol:VC_1277 "transcriptional regula... 128 7.0e-06 1
TAIR|locus:2170199 - symbol:AT5G06800 species:3702 "Arabi... 134 7.2e-06 1
UNIPROTKB|Q0J235 - symbol:RL9 "Probable transcription fac... 136 7.9e-06 1
TAIR|locus:2040282 - symbol:RR3 "response regulator 3" sp... 128 8.5e-06 1
TIGR_CMR|CPS_1260 - symbol:CPS_1260 "putative nitrate/nit... 126 9.6e-06 1
TAIR|locus:2080590 - symbol:ARR9 "response regulator 9" s... 128 1.0e-05 1
TIGR_CMR|BA_2265 - symbol:BA_2265 "DNA-binding response r... 126 1.0e-05 1
TAIR|locus:2139865 - symbol:PHR1 "phosphate starvation re... 133 1.1e-05 1
TIGR_CMR|CJE_1664 - symbol:CJE_1664 "DNA-binding response... 127 1.1e-05 1
TAIR|locus:2010297 - symbol:AT1G49560 "AT1G49560" species... 131 1.2e-05 1
TAIR|locus:2041539 - symbol:AT2G42660 "AT2G42660" species... 128 1.3e-05 1
TAIR|locus:2115070 - symbol:AT4G37180 species:3702 "Arabi... 131 1.4e-05 2
TAIR|locus:505006489 - symbol:KAN3 "AT4G17695" species:37... 130 1.5e-05 1
UNIPROTKB|Q4GZK9 - symbol:rr2 "Type A response regulator ... 125 1.6e-05 2
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 124 1.7e-05 1
DICTYBASE|DDB_G0282289 - symbol:dhkD "histidine kinase D"... 144 2.1e-05 3
TIGR_CMR|CPS_0397 - symbol:CPS_0397 "nitrogen regulation ... 131 2.3e-05 1
TAIR|locus:2038957 - symbol:AT2G20400 "AT2G20400" species... 133 2.3e-05 2
TAIR|locus:2204518 - symbol:AT1G14600 "AT1G14600" species... 125 3.0e-05 1
TAIR|locus:2097870 - symbol:RR5 "response regulator 5" sp... 119 3.4e-05 1
TAIR|locus:2170723 - symbol:ARR6 "response regulator 6" s... 119 3.7e-05 1
UNIPROTKB|Q48ND2 - symbol:cheY1 "Chemotaxis protein CheY"... 106 3.9e-05 1
TAIR|locus:2194584 - symbol:ARR4 "response regulator 4" s... 124 4.0e-05 1
UNIPROTKB|Q4K714 - symbol:PFL_4888 "Sigma-54 dependent DN... 128 4.8e-05 1
TIGR_CMR|CHY_1018 - symbol:CHY_1018 "chemotaxis response ... 105 5.1e-05 1
WARNING: Descriptions of 51 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 404 (147.3 bits), Expect = 3.3e-39, Sum P(2) = 3.3e-39
Identities = 87/218 (39%), Positives = 136/218 (62%)
Query: 5 RPVEALATVRIQRD-IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMK 63
R AL+ +R ++ D+V++D+HMP+M+G +L + + E LPV++MS+DD +SV++K
Sbjct: 59 RAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHVGLEMD-LPVIMMSADDSKSVVLK 117
Query: 64 ALASGVAFYILKPLNPDDLKNVWQYAMTYKKAK-SISIDEIGSFELAGFSAGKFSL---D 119
+ G Y++KP+ + LKN+WQ+ + K+ + ++S GS E G + D
Sbjct: 118 GVTHGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHRED 177
Query: 120 DIVSRSSVNEXXXXXXXXXXXXXXXXXXXQTKQNATAPKKPKVAWTDSLHNRFLQAIRHI 179
+ SSVNE K+++++ KKP+V W+ LH +F+ A+ +
Sbjct: 178 ADNNSSSVNEGNGRSSRKRKEEEVDDQGDD-KEDSSSLKKPRVVWSVELHQQFVAAVNQL 236
Query: 180 GLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 217
G++KAVPKKILE MNVPGLTRENVASHLQKYRI+L+R+
Sbjct: 237 GVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRL 274
Score = 41 (19.5 bits), Expect = 3.3e-39, Sum P(2) = 3.3e-39
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 461 GASSSSARFDNATYQIPSAFAGVNEQEN 488
G+S+++A F N +Y I + F ++Q N
Sbjct: 496 GSSAATAGFGNPSYDIFNDFPQ-HQQHN 522
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 401 (146.2 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 97/249 (38%), Positives = 149/249 (59%)
Query: 9 ALATVRIQRD-IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
AL+ +R + D+V++D+HMP+M+G +L + + E LPV++MS+DD +SV++K +
Sbjct: 72 ALSLLRKNKHGFDIVISDVHMPDMDGFKLLEHVGLEMD-LPVIMMSADDSKSVVLKGVTH 130
Query: 68 GVAFYILKPLNPDDLKNVWQYAMTYKKAK-SI-----SIDEIGSFEL---------AGFS 112
G Y++KP+ + LKN+WQ+ + ++++ S+ SI+E G + A S
Sbjct: 131 GAVDYLIKPVRMEALKNIWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVS 190
Query: 113 AGKFSLDDIVSRSSVNEXXX--XXXXXXXXXXXXXXXXQTKQNATAPKKPKVAWTDSLHN 170
G+ ++DD + SSVNE ++A+ KKP+V W+ LH
Sbjct: 191 GGEDAVDD--NSSSVNEGNNWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWSVELHQ 248
Query: 171 RFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAEQGASA-MGKTL 229
+F+ A+ +G+EKAVPKKILE MNVPGLTRENVASHLQKYRI+L+R+ G S G
Sbjct: 249 QFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRLG--GVSQHQGN-- 304
Query: 230 ALRSSFASG 238
L +SF +G
Sbjct: 305 -LNNSFMTG 312
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 82/232 (35%), Positives = 134/232 (57%)
Query: 1 VTVTRPVE-ALATVRIQRD-IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRE 58
VT+ + AL +R ++D DLV++D+HMP MNG L +++ LPV++MS D R
Sbjct: 37 VTICSQADVALTILRERKDSFDLVLSDVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRT 96
Query: 59 SVIMKALASGVAFYILKPLNPDDLKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSL 118
+ +M + G Y++KP+ P++LKN+WQ+ + + K + E+ S + + SL
Sbjct: 97 TTVMTGINHGACDYLIKPIRPEELKNIWQHVV---RRKCVMKKELRSSQALEDNKNSGSL 153
Query: 119 DDIV-SRSSVNEXXXXXXXXXXXXXXXXXXXQTKQNATA--P---KKPKVAWTDSLHNRF 172
+ +V S S +E ++ P KK +V W+ LH +F
Sbjct: 154 ETVVVSVSECSEESLMKCRNKKKKKKRSVDRDDNEDDLLLDPGNSKKSRVVWSIELHQQF 213
Query: 173 LQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAEQGASA 224
+ A+ +G++KAVPK+ILE MNVPGL+RENVASHLQK+R++LKR++ + + +
Sbjct: 214 VNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRLSGEASQS 265
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 332 (121.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 77/219 (35%), Positives = 124/219 (56%)
Query: 8 EALATVRIQRD-IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
EAL +R ++D D+V++D++MP+M+G +L + + E LPV++MS D S +MK +
Sbjct: 45 EALRLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLELD-LPVIMMSVDGETSRVMKGVQ 103
Query: 67 SGVAFYILKPLNPDDLKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSL---DDIVS 123
G Y+LKP+ +LK +WQ+ + K + E+ E G+ G + D+
Sbjct: 104 HGACDYLLKPIRMKELKIIWQHVLRKK------LQEVRDIEGCGYEGGADWITRYDEAHF 157
Query: 124 RSSVNEXXXXXXXXXXXXXXXXXXXQTKQNATAPKKPKVAWTDSLHNRFLQAIRHIGLE- 182
+ ++ ++++ KK +V W+ LH++F+ A+ IG +
Sbjct: 158 LGGGEDVSFGKKRKDFDFEKKLLQDESDPSSSSSKKARVVWSFELHHKFVNAVNQIGCDH 217
Query: 183 KAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAEQG 221
KA PKKIL+ MNVP LTRENVASHLQKYR++L R+ E+G
Sbjct: 218 KAGPKKILDLMNVPWLTRENVASHLQKYRLYLSRL-EKG 255
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 239 (89.2 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 46/81 (56%), Positives = 60/81 (74%)
Query: 155 TAPKKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFL 214
TA KKP+V WT LHN+FL A+ H+G+E+AVPKKIL+ MNV LTRENVASHLQK+R+ L
Sbjct: 179 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 238
Query: 215 KRVAEQGASAMGKTLALRSSF 235
K+V++ + A+ S F
Sbjct: 239 KKVSDDAIQQANRA-AIDSHF 258
Score = 159 (61.0 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 34/98 (34%), Positives = 59/98 (60%)
Query: 1 VTVTRPVE-ALATVRIQRD-IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRE 58
VT T + AL +R ++ DLV++D+ MP+M+G +L + + E LPV+++S+
Sbjct: 43 VTTTNQAQTALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMD-LPVIMLSAHSDP 101
Query: 59 SVIMKALASGVAFYILKPLNPDDLKNVWQYAMTYKKAK 96
+MK + G Y+LKP+ ++LKN+WQ+ + K K
Sbjct: 102 KYVMKGVKHGACDYLLKPVRIEELKNIWQHVVRKSKLK 139
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 330 (121.2 bits), Expect = 3.5e-29, P = 3.5e-29
Identities = 76/220 (34%), Positives = 119/220 (54%)
Query: 1 VTVTRPVE-ALATVRIQRD-IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRE 58
VT T + AL +R ++ DLV++D+ MP+M+G +L + + E LPV+++S+
Sbjct: 43 VTTTNQAQKALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMD-LPVIMLSAHSDP 101
Query: 59 SVIMKALASGVAFYILKPLNPDDLKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSL 118
+MK + G Y+LKP+ ++LKN+WQ+ + + K+ + G + G
Sbjct: 102 KYVMKGVTHGACDYLLKPVRIEELKNIWQHVVRSRFDKNRGSNNNGDKRDGSGNEG---- 157
Query: 119 DDIVSRSSVNEXXXXXXXXXXXXXXXXXXXQTKQNATAPKKPKVAWTDSLHNRFLQAIRH 178
V S N ++ A KK +V WT LH +F+ A+
Sbjct: 158 ---VGNSDQNNGKGNRKRKDQYNEDEDEDRDDNDDSCAQKKQRVVWTVELHKKFVAAVNQ 214
Query: 179 IGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVA 218
+G EKA+PKKIL+ MNV LTRENVASHLQK+R++LKR++
Sbjct: 215 LGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKRIS 254
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 283 (104.7 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 66/215 (30%), Positives = 110/215 (51%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
+DLV++D P +G+ + +E+ +F +P ++M+S + +MK +A+G ++LKP+
Sbjct: 57 VDLVISDAFFPTEDGLLILQEVTSKFG-IPTVIMASSGDTNTVMKYVANGAFDFLLKPVR 115
Query: 79 PDDLKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSL---DDIVSRSSVNEXXXXXX 135
++L N+WQ+ + + + +G+ E G ++ +RS+ E
Sbjct: 116 IEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPL 175
Query: 136 XXXXXXXXXXXXXQTKQNATAPKKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNV 195
+ K ++ WT LH +F+ A+ H+G +KAVPKKIL M V
Sbjct: 176 ENEVRDDMVNYNGEITDIRDLGKS-RLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKV 234
Query: 196 PGLTRENVASHLQKYRIFLKRVAEQGASAMGKTLA 230
LTRE VASHLQKYR+ LK+ S G TL+
Sbjct: 235 KHLTREQVASHLQKYRMQLKKSIPT-TSKHGATLS 268
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 283 (104.7 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 66/215 (30%), Positives = 110/215 (51%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
+DLV++D P +G+ + +E+ +F +P ++M+S + +MK +A+G ++LKP+
Sbjct: 57 VDLVISDAFFPTEDGLLILQEVTSKFG-IPTVIMASSGDTNTVMKYVANGAFDFLLKPVR 115
Query: 79 PDDLKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSL---DDIVSRSSVNEXXXXXX 135
++L N+WQ+ + + + +G+ E G ++ +RS+ E
Sbjct: 116 IEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPL 175
Query: 136 XXXXXXXXXXXXXQTKQNATAPKKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNV 195
+ K ++ WT LH +F+ A+ H+G +KAVPKKIL M V
Sbjct: 176 ENEVRDDMVNYNGEITDIRDLGKS-RLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKV 234
Query: 196 PGLTRENVASHLQKYRIFLKRVAEQGASAMGKTLA 230
LTRE VASHLQKYR+ LK+ S G TL+
Sbjct: 235 KHLTREQVASHLQKYRMQLKKSIPT-TSKHGATLS 268
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 258 (95.9 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 68/210 (32%), Positives = 108/210 (51%)
Query: 1 VTVTRPV-EALATVRIQRD-IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRE 58
VT+ V +A+ T+R R+ DL + ++ E + EI E LP++++S DD
Sbjct: 68 VTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGDIFRFLSEIGSEMD-LPIIIISEDDSV 126
Query: 59 SVIMKALASGVAFYILKPLNPDDLKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSL 118
+ K + +G A Y++KP+ P+DL+ V+++ + KK + G E A S+
Sbjct: 127 KSVKKWMINGAADYLIKPIRPEDLRIVFKHLV--KKMRERRSVVTGEAEKAAGEKSS-SV 183
Query: 119 DDIVSRSSVNEXXXXXXXXXXXXXXXXXXXQTKQNATAPKKPKVAWTDSLHNRFLQAIRH 178
D R+ N+ + A++ KK +V W + LH FL A+
Sbjct: 184 GDSTIRNP-NKSKRSSCLEAEVNEEDRHDHNDRACASSAKKRRVVWDEELHQNFLNAVDF 242
Query: 179 IGLEKAVPKKILEFMNVPGLTRENVASHLQ 208
+GLE+AVPKKIL+ M V ++RENVASHLQ
Sbjct: 243 LGLERAVPKKILDVMKVDYISRENVASHLQ 272
>TAIR|locus:2058445 [details] [associations]
symbol:MYBC1 "AT2G40970" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009409 "response to cold" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC004261
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC002409 EMBL:AY072381
EMBL:BT000098 IPI:IPI00539516 PIR:T00761 RefSeq:NP_181630.1
UniGene:At.27776 ProteinModelPortal:O22210 SMR:O22210
EnsemblPlants:AT2G40970.1 GeneID:818697 KEGG:ath:AT2G40970
TAIR:At2g40970 eggNOG:NOG255246 HOGENOM:HOG000238691
InParanoid:O22210 OMA:RYEDSEY PhylomeDB:O22210
ProtClustDB:CLSN2913178 ArrayExpress:O22210 Genevestigator:O22210
Uniprot:O22210
Length = 248
Score = 217 (81.4 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 217
K+P++ WT LH RF+ A+ H+G++ AVPK I++ M+V GLTRENVASHLQKYR++L+R+
Sbjct: 104 KRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYRLYLRRM 163
Query: 218 AEQGASAMGKT 228
QG + G T
Sbjct: 164 --QGGNGNGIT 172
>TAIR|locus:2175364 [details] [associations]
symbol:AT5G05090 "AT5G05090" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002688
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AB005245 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY093188
EMBL:BT006289 IPI:IPI00523871 RefSeq:NP_196128.1 UniGene:At.33034
ProteinModelPortal:Q9FF65 SMR:Q9FF65 PRIDE:Q9FF65
EnsemblPlants:AT5G05090.1 GeneID:830391 KEGG:ath:AT5G05090
TAIR:At5g05090 InParanoid:Q9FF65 OMA:MREEDSN PhylomeDB:Q9FF65
ProtClustDB:CLSN2716677 ArrayExpress:Q9FF65 Genevestigator:Q9FF65
Uniprot:Q9FF65
Length = 266
Score = 217 (81.4 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 37/64 (57%), Positives = 51/64 (79%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 217
K+P++ WT LH RF+ A+ H+G++ AVPK I++ M+V GLTRENVASHLQKYR++LKR+
Sbjct: 80 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 139
Query: 218 AEQG 221
G
Sbjct: 140 KSGG 143
>TAIR|locus:2148348 [details] [associations]
symbol:BOA "AT5G59570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0009909 "regulation of flower development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GO:GO:0003677 GO:GO:0007623 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB025604
GO:GO:0009909 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT026065 EMBL:AK117348
EMBL:AB206577 IPI:IPI00538187 RefSeq:NP_200765.1 UniGene:At.29219
ProteinModelPortal:Q9LTH4 SMR:Q9LTH4 STRING:Q9LTH4
EnsemblPlants:AT5G59570.1 GeneID:836076 KEGG:ath:AT5G59570
TAIR:At5g59570 InParanoid:Q9LTH4 OMA:ERSRTIH PhylomeDB:Q9LTH4
ProtClustDB:CLSN2685121 Genevestigator:Q9LTH4 Uniprot:Q9LTH4
Length = 298
Score = 217 (81.4 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 36/60 (60%), Positives = 49/60 (81%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 217
K+P++ WT LH RF+ + H+G++ AVPK I++ MNV GLTRENVASHLQKYR++LKR+
Sbjct: 140 KRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRI 199
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 168 (64.2 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 153 NATAPKKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212
N T+ KK V WT LH +F+QA+ +G+++A+P +ILE M V LTR NVASHLQK+R
Sbjct: 292 NKTSRKK--VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQ 349
Query: 213 FLKRV 217
K +
Sbjct: 350 HRKNI 354
Score = 110 (43.8 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 2 TVTRPVEAL-ATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
T T EAL A V+ + + +++M + E K + LP +++S+D +
Sbjct: 52 TFTDETEALSAVVKNPESFHIAIVEVNMSAES--ESFKFLEAAKDVLPTIMISTDHCITT 109
Query: 61 IMKALASGVAFYILKPLNPDDLKNVWQYAM 90
MK +A G ++ KPL+P+ LKN+WQ+ +
Sbjct: 110 TMKCIALGAVEFLQKPLSPEKLKNIWQHVV 139
>TAIR|locus:2103247 [details] [associations]
symbol:AT3G10760 "AT3G10760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AC011708 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000238691 ProtClustDB:CLSN2716677
IPI:IPI00530545 RefSeq:NP_187687.1 UniGene:At.39869
ProteinModelPortal:Q9SG82 SMR:Q9SG82 PRIDE:Q9SG82
EnsemblPlants:AT3G10760.1 GeneID:820245 KEGG:ath:AT3G10760
TAIR:At3g10760 eggNOG:NOG312708 InParanoid:Q9SG82 OMA:FARWEEE
PhylomeDB:Q9SG82 Genevestigator:Q9SG82 Uniprot:Q9SG82
Length = 335
Score = 221 (82.9 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 40/69 (57%), Positives = 55/69 (79%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 217
K+P++ WT LH RF+ A+ H+G++ AVPK I++ M+V GLTRENVASHLQKYR++LKR+
Sbjct: 104 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRM 163
Query: 218 AEQGASAMG 226
QG S+ G
Sbjct: 164 --QGLSSGG 170
>TAIR|locus:2167639 [details] [associations]
symbol:GLK2 "AT5G44190" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP;IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009910 "negative regulation of flower
development" evidence=IGI] [GO:0010380 "regulation of chlorophyll
biosynthetic process" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006417 "regulation of translation" evidence=RCA]
[GO:0009651 "response to salt stress" evidence=RCA] [GO:0009657
"plastid organization" evidence=RCA] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045893 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 EMBL:AB005239
GO:GO:0009658 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
PROSITE:PS51293 GO:GO:0009910 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237698 EMBL:AB062490 EMBL:AY026773 EMBL:AY028368
EMBL:AY050386 EMBL:AY124819 IPI:IPI00535889 RefSeq:NP_199232.1
UniGene:At.19638 ProteinModelPortal:Q9FFH0 SMR:Q9FFH0 STRING:Q9FFH0
EnsemblPlants:AT5G44190.1 GeneID:834442 KEGG:ath:AT5G44190
TAIR:At5g44190 eggNOG:NOG271712 InParanoid:Q9FFH0 OMA:QEMEGNT
PhylomeDB:Q9FFH0 ProtClustDB:CLSN2916711 Genevestigator:Q9FFH0
Uniprot:Q9FFH0
Length = 386
Score = 206 (77.6 bits), Expect = 5.9e-14, P = 5.9e-14
Identities = 41/79 (51%), Positives = 52/79 (65%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 217
KKPKV WT LH +F+QA+ +G++KAVP +ILE MNV LTR NVASHLQKYR K +
Sbjct: 146 KKPKVDWTPELHRKFVQAVEQLGVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSHRKHL 205
Query: 218 AEQGASAMGKTLALRSSFA 236
+ A A L ++ A
Sbjct: 206 LAREAEAASWNLRRHATVA 224
>UNIPROTKB|Q5Z5I4 [details] [associations]
symbol:GLK1 "Probable transcription factor GLK1"
species:39947 "Oryza sativa Japonica Group" [GO:0010638 "positive
regulation of organelle organization" evidence=IGI] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IGI]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0045893 GO:GO:0003677 EMBL:AP008212 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AP005688 EMBL:AK061946 EMBL:AK065184
EMBL:AK098909 EMBL:AK122161 RefSeq:NP_001057583.2 UniGene:Os.3340
ProteinModelPortal:Q5Z5I4 STRING:Q5Z5I4
EnsemblPlants:LOC_Os06g24070.1 GeneID:4340977 KEGG:osa:4340977
Gramene:Q5Z5I4 eggNOG:NOG283574 HOGENOM:HOG000237698 OMA:IDSLTRH
ProtClustDB:CLSN2696175 GO:GO:0010638 Uniprot:Q5Z5I4
Length = 455
Score = 206 (77.6 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 49/146 (33%), Positives = 72/146 (49%)
Query: 101 DEIGSFELAGFSAGKFSLDDIVSRSSVNEXXXXXXXXXXXXXXXXXXXQ--------TKQ 152
+E +F AG G + DD ++V++ Q + +
Sbjct: 114 EENAAFAGAGEEKGGCNQDDDAGEANVDDGAAAVEAKSSSPSSTTSSSQEAESRHKSSSK 173
Query: 153 NATAPKKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212
++ KK KV WT LH RF+QA+ +G++KAVP +ILE M + LTR N+ASHLQKYR
Sbjct: 174 SSHGKKKAKVDWTPELHRRFVQAVEQLGIDKAVPSRILEIMGIDSLTRHNIASHLQKYRS 233
Query: 213 FLKRVAEQGASAMGKTLALRSSFASG 238
K + + A A T R +A+G
Sbjct: 234 HRKHMIAREAEAASWTQR-RQIYAAG 258
>TAIR|locus:2174063 [details] [associations]
symbol:RR23 "response regulator 23" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
EMBL:CP002688 GO:GO:0006355 GO:GO:0005622 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 IPI:IPI00547104
RefSeq:NP_201018.1 UniGene:At.55679 ProteinModelPortal:F4K554
SMR:F4K554 EnsemblPlants:AT5G62120.1 GeneID:836332
KEGG:ath:AT5G62120 OMA:KWTKPLQ PhylomeDB:F4K554 Uniprot:F4K554
Length = 145
Score = 129 (50.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 31/90 (34%), Positives = 56/90 (62%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSD-DRESVIMKALA 66
E + T+ +ID+V+TD HMP +NG++L+K I+EEF +LPV+ + + + E + +AL
Sbjct: 8 EPVTTLTQFNNIDVVITDYHMPGLNGVQLKKRIDEEFGNLPVIDLYRNIEHEELFRRALC 67
Query: 67 SGVAFYILKPLNPDDLKN---VWQYAMTYK 93
++ KP++ DL + V Q A+ ++
Sbjct: 68 -----FMHKPISRRDLNSLNVVCQQALRHR 92
Score = 66 (28.3 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIGL 181
+KPK+ WT L +RF+ A++ +G+
Sbjct: 118 EKPKLKWTKPLQHRFMSALKSLGV 141
>TAIR|locus:2199342 [details] [associations]
symbol:APRR6 "pseudo-response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC016447 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557 KO:K14491
IPI:IPI00522591 IPI:IPI01020037 PIR:E96705 RefSeq:NP_176988.4
UniGene:At.52431 ProteinModelPortal:Q9C9F6 SMR:Q9C9F6 PaxDb:Q9C9F6
PRIDE:Q9C9F6 GeneID:843150 KEGG:ath:AT1G68210 GeneFarm:4346
TAIR:At1g68210 eggNOG:NOG320519 OMA:IANIEMP Genevestigator:Q9C9F6
Uniprot:Q9C9F6
Length = 755
Score = 124 (48.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 161 KVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVA 218
K W H +F+ AI +G E PK ILE MN P LT V SHLQKY+ + +++
Sbjct: 224 KSLWNSERHMKFIAAISILGEEDFRPKSILEIMNDPNLTHRQVGSHLQKYKAQIDQIS 281
Score = 96 (38.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 23/98 (23%), Positives = 52/98 (53%)
Query: 8 EALATVRIQR-DIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
+AL+ + Q+ +I L++ ++ MP ++ + +P+++++ + + L
Sbjct: 47 KALSMIEKQKKEIGLIIANIEMPHIDSHSFLNALL--LKDIPLILINPEIKTKEPSDLLT 104
Query: 67 SGVAFYILKPLNPDDLKNVWQYAMTYK--KAKSISIDE 102
F + KP++ DD+KN+WQ+ + K + K I+I E
Sbjct: 105 KRACFSLDKPISNDDIKNMWQHVFSKKSQELKKINITE 142
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 145 (56.1 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRES 59
TV AL + + R++ +++TD MPEM G +L K + E E +PV++MSS++ +
Sbjct: 39 TVDSGKRALEVLSLDRNVHMIITDYCMPEMTGFDLLKRVKESAELKEIPVVLMSSENSPT 98
Query: 60 VIMKALASGVAFYILKPLNPDDLKNV 85
I + L G +++KP+ P D+ +
Sbjct: 99 RIRRCLEEGAEDFLIKPVRPSDVSRL 124
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 144 (55.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 33/91 (36%), Positives = 51/91 (56%)
Query: 1 VTVTRPV-EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDR 57
VT V +AL + + D+D++V+D MP+M G L E+ + + HLPV++ SSD+
Sbjct: 30 VTAVESVMQALMFLDSEHDVDMIVSDYCMPDMTGYNLLMEVKKSPKLAHLPVVIASSDNI 89
Query: 58 ESVIMKALASGVAFYILKPLNPDDLKNVWQY 88
I K L G YILKP+ D+ + +Y
Sbjct: 90 PERIRKCLDGGAKDYILKPVKIVDVPRIMKY 120
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 143 (55.4 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 28/79 (35%), Positives = 52/79 (65%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKA 64
VEA + D+ +++TD +MPEMNG+EL K++ E + +P+++++++ ++ ++ A
Sbjct: 35 VEAWDLLTKNEDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITA 94
Query: 65 LASGVAFYILKPLNPDDLK 83
L +GV YI+KP P LK
Sbjct: 95 LKAGVNNYIVKPFTPQVLK 113
>TAIR|locus:2172394 [details] [associations]
symbol:MYR1 "myb-related protein 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002688 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB012246
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00538966 RefSeq:NP_197325.1 RefSeq:NP_974798.1
UniGene:At.7556 ProteinModelPortal:Q9FK47 SMR:Q9FK47
EnsemblPlants:AT5G18240.1 EnsemblPlants:AT5G18240.4 GeneID:831942
KEGG:ath:AT5G18240 TAIR:At5g18240 InParanoid:Q9FK47 OMA:LETHTRT
PhylomeDB:Q9FK47 ProtClustDB:CLSN2686543 Genevestigator:Q9FK47
Uniprot:Q9FK47
Length = 402
Score = 163 (62.4 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 159 KPKVAWTDSLHNRFLQAIRHIGL-EKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 217
KP++ WT LH RF++A+ +G +KA PK I++ M +PGLT ++ SHLQKYR+ K +
Sbjct: 45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRLS-KNL 103
Query: 218 AEQGASAMGKT 228
Q S++ KT
Sbjct: 104 NGQANSSLNKT 114
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 139 (54.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/79 (34%), Positives = 51/79 (64%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKA 64
VEA + D +++TD +MPEMNG++L K++ + F +P+++++++ ++ ++ A
Sbjct: 35 VEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITA 94
Query: 65 LASGVAFYILKPLNPDDLK 83
L +GV YI+KP P LK
Sbjct: 95 LKAGVNNYIVKPFTPQVLK 113
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 139 (54.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
D D VVTD +MP M GI+L K I +EE HLPV++++++ + I++A +GV YI+K
Sbjct: 53 DFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVK 112
Query: 76 PLNPDDLK 83
P LK
Sbjct: 113 PFTAATLK 120
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 139 (54.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
D D VVTD +MP M GI+L K I +EE HLPV++++++ + I++A +GV YI+K
Sbjct: 53 DFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVK 112
Query: 76 PLNPDDLK 83
P LK
Sbjct: 113 PFTAATLK 120
>TAIR|locus:2087740 [details] [associations]
symbol:AT3G12730 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY070764
EMBL:AY143916 IPI:IPI00519091 RefSeq:NP_187879.2 UniGene:At.28330
ProteinModelPortal:Q8VYI2 SMR:Q8VYI2 EnsemblPlants:AT3G12730.1
GeneID:820455 KEGG:ath:AT3G12730 TAIR:At3g12730 eggNOG:NOG317938
InParanoid:Q8VYI2 OMA:CETQEAS PhylomeDB:Q8VYI2
ProtClustDB:CLSN2917937 Genevestigator:Q8VYI2 Uniprot:Q8VYI2
Length = 235
Score = 152 (58.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 155 TAPKKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212
T KP++ WT LH RF+ A+ H+G EKA PK I+ M V GLT ++ SHLQK+R+
Sbjct: 19 TTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/84 (34%), Positives = 55/84 (65%)
Query: 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVI 61
+V+ EAL ++ QR+++++VTD++MPEMNGI +E+N+ F V+++++
Sbjct: 35 SVSNGFEALNYLQ-QREVNVIVTDINMPEMNGITFLRELNKSFPRSNVIMITAYGGVESY 93
Query: 62 MKALASGVAFYILKPLNPDDLKNV 85
++A+ G YI KP+ D+LK++
Sbjct: 94 IEAMNLGAFEYINKPVKLDELKSI 117
>TAIR|locus:2205339 [details] [associations]
symbol:HRS1 "HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY
ROOT SHORTENING 1" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0016036 "cellular response to
phosphate starvation" evidence=IMP] [GO:0080022 "primary root
development" evidence=IMP] [GO:0000041 "transition metal ion
transport" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011810
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0080022 GO:GO:0016036 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000237574 EMBL:AF367336 EMBL:AY124865
IPI:IPI00529437 PIR:F86267 RefSeq:NP_563926.1 UniGene:At.20366
ProteinModelPortal:Q9FX67 SMR:Q9FX67 STRING:Q9FX67
EnsemblPlants:AT1G13300.1 GeneID:837890 KEGG:ath:AT1G13300
TAIR:At1g13300 eggNOG:NOG274505 InParanoid:Q9FX67 OMA:TRDESMR
PhylomeDB:Q9FX67 ProtClustDB:CLSN2687791 Genevestigator:Q9FX67
Uniprot:Q9FX67
Length = 344
Score = 157 (60.3 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 149 QTKQNATAPKKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHL 207
+ +++ +K + W+ LH RFL A++H+G A PK+I EFM V GLT + V SHL
Sbjct: 171 EAEKDGGGGRKQRRCWSSQLHRRFLNALQHLGGPHVATPKQIREFMKVDGLTNDEVKSHL 230
Query: 208 QKYRIFLKR 216
QKYR+ +R
Sbjct: 231 QKYRLHTRR 239
Score = 39 (18.8 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 326 SAGKTCGSSGSNATEANPLSRGGLAAGLMNQMYQQKSQLRPN 367
S GKT G + +++T G +AA Q + S RP+
Sbjct: 269 STGKTTGGATTSSTTTTTGIYGTMAAPPPPQ-WPSHSNYRPS 309
>TAIR|locus:2095933 [details] [associations]
symbol:MYR2 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011698
ProtClustDB:CLSN2686543 IPI:IPI00524229 RefSeq:NP_001118567.1
UniGene:At.40915 ProteinModelPortal:Q9SQQ9 SMR:Q9SQQ9
EnsemblPlants:AT3G04030.3 GeneID:819558 KEGG:ath:AT3G04030
TAIR:At3g04030 InParanoid:Q9SQQ9 OMA:HITSERH PhylomeDB:Q9SQQ9
Genevestigator:Q9SQQ9 Uniprot:Q9SQQ9
Length = 394
Score = 157 (60.3 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 159 KPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 217
KP++ WT LH RF++A+ +G +KA PK I++ M +PGLT ++ SHLQKYR+ K +
Sbjct: 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLS-KNL 103
Query: 218 AEQGASAMGK 227
Q ++ K
Sbjct: 104 NGQANNSFNK 113
>TAIR|locus:2093726 [details] [associations]
symbol:AT3G24120 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] [GO:0010048 "vernalization
response" evidence=RCA] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00531757
RefSeq:NP_974356.1 UniGene:At.26588 ProteinModelPortal:F4J5D9
SMR:F4J5D9 EnsemblPlants:AT3G24120.2 GeneID:821998
KEGG:ath:AT3G24120 OMA:NLPGDAC PhylomeDB:F4J5D9 Uniprot:F4J5D9
Length = 298
Score = 152 (58.6 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 40/107 (37%), Positives = 59/107 (55%)
Query: 155 TAPKKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIF 213
T KP++ WT LH RF+ A+ +G +KA PK I+ M V GLT ++ SHLQK+R+
Sbjct: 37 TTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLG 96
Query: 214 LKRVAE-----QGASAMGKTLALRSSFASGHVSMMLQEAHEFSQVRD 255
+ E + AS +G++ SS S + M QE +E QV +
Sbjct: 97 RQAGKESTENSKDASCVGESQDTGSSSTSS-MRMAQQEQNEGYQVTE 142
>TAIR|locus:2157146 [details] [associations]
symbol:AT5G45580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00931042
RefSeq:NP_199371.2 UniGene:At.50506 ProteinModelPortal:F4KEK2
SMR:F4KEK2 PRIDE:F4KEK2 DNASU:834596 EnsemblPlants:AT5G45580.1
GeneID:834596 KEGG:ath:AT5G45580 OMA:YQIEVQR Uniprot:F4KEK2
Length = 264
Score = 149 (57.5 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 155 TAPKKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIF 213
T KP++ WT LH+RF+ A+ +G +KA PK +L+ M + GLT ++ SHLQKYR+
Sbjct: 3 TRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRLG 62
Query: 214 LKRVAEQGASAMGK 227
++ +Q + K
Sbjct: 63 QQQGKKQNRTEQNK 76
Score = 38 (18.4 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 455 FGHLTPGASSSSARFDN 471
F + + G S+ +RFDN
Sbjct: 86 FDNCSQGGISNDSRFDN 102
>TAIR|locus:2125771 [details] [associations]
symbol:AT4G04580 "AT4G04580" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AL161501 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AF074021 IPI:IPI00541303 PIR:G85057
RefSeq:NP_192367.1 UniGene:At.54143 ProteinModelPortal:Q9XEB2
SMR:Q9XEB2 EnsemblPlants:AT4G04580.1 GeneID:825790
KEGG:ath:AT4G04580 TAIR:At4g04580 eggNOG:NOG300503
HOGENOM:HOG000153846 InParanoid:Q9XEB2 OMA:RDLTISH PhylomeDB:Q9XEB2
ProtClustDB:CLSN2915807 ArrayExpress:Q9XEB2 Genevestigator:Q9XEB2
Uniprot:Q9XEB2
Length = 166
Score = 133 (51.9 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 38/119 (31%), Positives = 58/119 (48%)
Query: 160 PKVAWTDSLHNRFLQAIRHIGLEK-AVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVA 218
P++ WTD L RF+Q I +G E+ A PK+IL M V LT +V SHLQ YR +
Sbjct: 15 PRMHWTDDLDIRFIQVIEKLGGEESATPKRILSLMGVRDLTISHVKSHLQMYR---NKKK 71
Query: 219 EQGASAMGKTLALRSSFASGHVSMMLQEAHEFSQVRDQQQQMRTSAFLPGYASGVSALN 277
E+ + + K + + S + + A +F Q + + Q T P S +L+
Sbjct: 72 EESSKEI-KMMREMTQRQSQQYLQIYERATQFIQNQQRLQLDNTEKITPVLGSSNKSLD 129
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 132 (51.5 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 27/86 (31%), Positives = 51/86 (59%)
Query: 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRES 59
+ TR +E L + + ++++++TD MP M G EL K + E + +PV++MSS++ +
Sbjct: 81 SATRALELLC-LGLVPNVNMIITDYWMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPN 139
Query: 60 VIMKALASGVAFYILKPLNPDDLKNV 85
I + L G ++LKP+ P D+ +
Sbjct: 140 RISRCLEEGAEDFLLKPVRPSDVSRL 165
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 132 (51.5 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 26/80 (32%), Positives = 53/80 (66%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKAL 65
EAL + +R +DL++TD++MP++NG+EL + ++ + H+P+ ++S++ E K L
Sbjct: 37 EALRLLPRER-LDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGL 95
Query: 66 ASGVAFYILKPLNPDDLKNV 85
+ G Y++KP +P L+++
Sbjct: 96 SLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 132 (51.5 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 26/80 (32%), Positives = 53/80 (66%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKAL 65
EAL + +R +DL++TD++MP++NG+EL + ++ + H+P+ ++S++ E K L
Sbjct: 37 EALRLLPRER-LDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGL 95
Query: 66 ASGVAFYILKPLNPDDLKNV 85
+ G Y++KP +P L+++
Sbjct: 96 SLGANEYLVKPFDPARLQDL 115
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 129 (50.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 26/79 (32%), Positives = 50/79 (63%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEIN--EEFTHLPVMVMSSDDRESVIMKA 64
VEAL ++ +DL + D++MP+M+G L +EI E +P +++S++ +ES +
Sbjct: 36 VEALERA-LEMPVDLFLVDINMPKMDGFTLVREIRCRPELAGIPTVMISTESQESDRQQG 94
Query: 65 LASGVAFYILKPLNPDDLK 83
+ G Y++KP+NP++L+
Sbjct: 95 IHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 129 (50.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 26/79 (32%), Positives = 50/79 (63%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEIN--EEFTHLPVMVMSSDDRESVIMKA 64
VEAL ++ +DL + D++MP+M+G L +EI E +P +++S++ +ES +
Sbjct: 36 VEALERA-LEMPVDLFLVDINMPKMDGFTLVREIRCRPELAGIPTVMISTESQESDRQQG 94
Query: 65 LASGVAFYILKPLNPDDLK 83
+ G Y++KP+NP++L+
Sbjct: 95 IHMGANLYMVKPVNPEELQ 113
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 147 (56.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 26/73 (35%), Positives = 50/73 (68%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
+IDL++T+L +P ++G L + +E ++PV++MSS D +++K + G A Y++K
Sbjct: 82 NIDLILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIK 141
Query: 76 PLNPDDLKNVWQY 88
P+ ++LKN+WQ+
Sbjct: 142 PMRKNELKNLWQH 154
Score = 47 (21.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 311 QSLFGNTRNPLYQANSAGKTCGSSGSNATEANPLSRGGLAAGLMNQMYQ 359
+S G + P K GS T +N + G + NQ+ Q
Sbjct: 307 ESTSGEPKTPTESHEKLRKVTSDQGSATTSSNQENIGSSSVSFRNQVLQ 355
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 127 (49.8 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
D D VVTD +MP M GI+L K I + +H+PV++++++ ++ I+ A +GV YI+K
Sbjct: 49 DFDFVVTDWNMPGMQGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVK 108
Query: 76 PLNPDDLK 83
P LK
Sbjct: 109 PFTAATLK 116
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 127 (49.8 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
D D VVTD +MP M GI+L K I ++ HLPV++++++ + I+ A +GV Y++K
Sbjct: 49 DFDFVVTDWNMPGMQGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVK 108
Query: 76 PLNPDDLK 83
P LK
Sbjct: 109 PFTAATLK 116
>TAIR|locus:2045761 [details] [associations]
symbol:AT2G01060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0006499 "N-terminal protein myristoylation"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006837
EMBL:AF370550 EMBL:AY084725 EMBL:BT000013 IPI:IPI00544604
PIR:B84420 RefSeq:NP_178216.1 UniGene:At.24449
ProteinModelPortal:Q9SJW0 SMR:Q9SJW0 EnsemblPlants:AT2G01060.1
GeneID:814630 KEGG:ath:AT2G01060 TAIR:At2g01060 eggNOG:NOG329415
InParanoid:Q9SJW0 OMA:TNELHER PhylomeDB:Q9SJW0
ProtClustDB:CLSN2683513 ArrayExpress:Q9SJW0 Genevestigator:Q9SJW0
Uniprot:Q9SJW0
Length = 286
Score = 145 (56.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 35/98 (35%), Positives = 51/98 (52%)
Query: 153 NATAPKKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYR 211
N++ K ++ WT LH RF+ A+ +G ++A PK +L M V GLT +V SHLQKYR
Sbjct: 9 NSSHASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 68
Query: 212 I--FLKRVAEQGASAMGKTLALRSSFASGHVSMMLQEA 247
+ +L + +G K S G M + EA
Sbjct: 69 LAKYLPDSSSEGKKTDKKESGDMLSGLDGSSGMQITEA 106
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 126 (49.4 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 25/67 (37%), Positives = 44/67 (65%)
Query: 19 IDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76
ID +VTD +MP M GI+L + + +E+ HLPV++++++ + I++A +GV Y++KP
Sbjct: 46 IDFLVTDWNMPGMTGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKP 105
Query: 77 LNPDDLK 83
LK
Sbjct: 106 FTAQALK 112
>TAIR|locus:2026739 [details] [associations]
symbol:AT1G69580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002684 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 EMBL:AC021046 IPI:IPI00846148
RefSeq:NP_001077798.1 UniGene:At.52449 ProteinModelPortal:A8MSE5
SMR:A8MSE5 PRIDE:A8MSE5 EnsemblPlants:AT1G69580.2 GeneID:843294
KEGG:ath:AT1G69580 TAIR:At1g69580 eggNOG:NOG249461 OMA:MEINNNA
PhylomeDB:A8MSE5 ProtClustDB:CLSN2699064 ArrayExpress:A8MSE5
Genevestigator:A8MSE5 Uniprot:A8MSE5
Length = 337
Score = 145 (56.1 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 159 KPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212
KP++ WT LH++F++A+ +G KA PK +++ M +PGLT ++ SHLQKYR+
Sbjct: 34 KPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRL 88
>TAIR|locus:2119425 [details] [associations]
symbol:UNE16 "unfertilized embryo sac 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009567 "double fertilization forming a
zygote and endosperm" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0009567
IPI:IPI00657591 RefSeq:NP_001031626.1 UniGene:At.22199
ProteinModelPortal:F4JTR5 SMR:F4JTR5 PRIDE:F4JTR5
EnsemblPlants:AT4G13640.2 GeneID:826998 KEGG:ath:AT4G13640
OMA:LPIDACL PhylomeDB:F4JTR5 Uniprot:F4JTR5
Length = 295
Score = 144 (55.7 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 37/107 (34%), Positives = 57/107 (53%)
Query: 155 TAPKKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIF 213
T KP++ WT LH RF+ A+ +G +KA PK I+ M V GLT ++ SHLQK+R+
Sbjct: 33 TTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLG 92
Query: 214 LKRVAE-----QGASAMGKTLALRSSFASGHVSMMLQEAHEFSQVRD 255
+ E + S + ++ SS S + + QE +E QV +
Sbjct: 93 RQSCKESIDNSKDVSCVAESQDTGSSSTSS-LRLAAQEQNESYQVTE 138
Score = 38 (18.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 458 LTPGASSSSARFDNATYQIPS 478
+T G +++ FD IPS
Sbjct: 211 ITNGCQGTTSTFDTTKMMIPS 231
>TAIR|locus:2042927 [details] [associations]
symbol:AT2G38300 "AT2G38300" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT004973
EMBL:AK117689 IPI:IPI00540370 RefSeq:NP_181364.2 UniGene:At.46670
ProteinModelPortal:Q8GYE4 SMR:Q8GYE4 IntAct:Q8GYE4 STRING:Q8GYE4
PRIDE:Q8GYE4 EnsemblPlants:AT2G38300.1 GeneID:818410
KEGG:ath:AT2G38300 TAIR:At2g38300 eggNOG:NOG310127
HOGENOM:HOG000090767 InParanoid:Q8GYE4 OMA:KDEEDRT PhylomeDB:Q8GYE4
ProtClustDB:CLSN2918908 Genevestigator:Q8GYE4 Uniprot:Q8GYE4
Length = 340
Score = 145 (56.1 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216
K P++ WT LH RF++A+ +G E+A PK + + MN+ GL+ +V SHLQ YR K+
Sbjct: 53 KVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS--KK 110
Query: 217 VAEQGASAMG 226
+ +QG + G
Sbjct: 111 IDDQGQAIAG 120
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 137 (53.3 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 9 ALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKALA 66
AL + + ++ +++TD MPEM G +L K+I E E +PV++MSS++ + I + L
Sbjct: 122 ALEILGSEPNVSMIITDYWMPEMTGYDLLKKIKESSELKQIPVVIMSSENVPTRISRCLE 181
Query: 67 SGVAFYILKPLNPDDLKNV 85
G ++LKP+ P D+ +
Sbjct: 182 EGAEDFLLKPVRPADISRI 200
>TAIR|locus:2026863 [details] [associations]
symbol:AT1G68670 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0009737 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY063886
EMBL:AY091241 IPI:IPI00541260 RefSeq:NP_564938.1 UniGene:At.27154
ProteinModelPortal:Q8VZS3 SMR:Q8VZS3 IntAct:Q8VZS3
EnsemblPlants:AT1G68670.1 GeneID:843197 KEGG:ath:AT1G68670
TAIR:At1g68670 HOGENOM:HOG000237574 InParanoid:Q8VZS3 OMA:EHESSPE
PhylomeDB:Q8VZS3 ProtClustDB:CLSN2687960 ArrayExpress:Q8VZS3
Genevestigator:Q8VZS3 Uniprot:Q8VZS3
Length = 354
Score = 145 (56.1 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 149 QTKQNATAPKKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHL 207
Q Q+ T +K + W+ LH RFL A++ +G A PK+I + M V GLT + V SHL
Sbjct: 206 QQSQSHTH-RKQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHL 264
Query: 208 QKYRIFLKRVAEQGASA 224
QKYR+ +R A +A
Sbjct: 265 QKYRLHTRRPAATSVAA 281
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 124 (48.7 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 27/84 (32%), Positives = 51/84 (60%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
+EAL V + + DL+ D++MP+M+G ++ E LPV+++S++ +E +K L
Sbjct: 34 LEALEKV-LNGEFDLMTVDVNMPKMDGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQ 92
Query: 67 SGVAFYILKPLNPDDLKNVWQYAM 90
+G Y++KP+ P+ + + YAM
Sbjct: 93 AGATLYLVKPVLPEQIIS---YAM 113
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 124 (48.7 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 27/84 (32%), Positives = 51/84 (60%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
+EAL V + + DL+ D++MP+M+G ++ E LPV+++S++ +E +K L
Sbjct: 34 LEALEKV-LNGEFDLMTVDVNMPKMDGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQ 92
Query: 67 SGVAFYILKPLNPDDLKNVWQYAM 90
+G Y++KP+ P+ + + YAM
Sbjct: 93 AGATLYLVKPVLPEQIIS---YAM 113
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 124 (48.7 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 23/76 (30%), Positives = 47/76 (61%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
+E L V + +DL+++D++MP M+G+E K+ P+++++++ E ++ +A++
Sbjct: 38 IEGL-NVLSGKSVDLILSDINMPNMDGLEFIKQARANGHKAPIVMITTEGGEDILKEAIS 96
Query: 67 SGVAFYILKPLNPDDL 82
SG + I KP PD L
Sbjct: 97 SGASDSIKKPFTPDQL 112
>TAIR|locus:2148720 [details] [associations]
symbol:PHL1 "AT5G29000" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:AC018632 EMBL:BT002344 EMBL:AY085154 IPI:IPI00527102
IPI:IPI00527253 IPI:IPI00891441 RefSeq:NP_001078629.1
RefSeq:NP_001119299.1 RefSeq:NP_568512.3 RefSeq:NP_851090.1
UniGene:At.26183 ProteinModelPortal:Q8GUN5 SMR:Q8GUN5 PRIDE:Q8GUN5
EnsemblPlants:AT5G29000.2 GeneID:833026 KEGG:ath:AT5G29000
TAIR:At5g29000 eggNOG:NOG275266 InParanoid:Q8GUN5 OMA:DSSSHNP
PhylomeDB:Q8GUN5 ProtClustDB:CLSN2680328 Genevestigator:Q8GUN5
Uniprot:Q8GUN5
Length = 413
Score = 145 (56.1 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 149 QTKQNATAPKKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHL 207
+ ++ A K ++ WT LH F++A+ +G E+A PK +L+ +N PGLT +V SHL
Sbjct: 221 RNSSSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHL 280
Query: 208 QKYR 211
QKYR
Sbjct: 281 QKYR 284
>TAIR|locus:2163852 [details] [associations]
symbol:ATS "AT5G42630" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0048481 "ovule development" evidence=IMP] [GO:0080060
"integument development" evidence=IGI;IMP] [GO:0005618 "cell wall"
evidence=IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0005618 GO:GO:0030154 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0044212
PROSITE:PS51293 HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 GO:GO:0080060 HOGENOM:HOG000241649 EMBL:AB013391
EMBL:AY048691 EMBL:BT026053 IPI:IPI00541325 IPI:IPI00892123
RefSeq:NP_001119363.1 RefSeq:NP_199077.1 UniGene:At.26412
ProteinModelPortal:Q9FJV5 SMR:Q9FJV5 STRING:Q9FJV5
EnsemblPlants:AT5G42630.1 GeneID:834270 KEGG:ath:AT5G42630
TAIR:At5g42630 eggNOG:NOG280455 InParanoid:Q9FJV5 OMA:PQIYGRD
PhylomeDB:Q9FJV5 ProtClustDB:CLSN2916355 Genevestigator:Q9FJV5
Uniprot:Q9FJV5
Length = 276
Score = 141 (54.7 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216
+ P++ WT +LH F+ A++ +G E+A PK +LE MNV LT +V SHLQ YR +
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV--K 161
Query: 217 VAEQGASAMGK 227
++G+ GK
Sbjct: 162 CTDKGSPGEGK 172
>TAIR|locus:2063746 [details] [associations]
symbol:AT2G03500 "AT2G03500" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006284
HOGENOM:HOG000237574 EMBL:AY060559 EMBL:AY133630 EMBL:AK221662
IPI:IPI00544167 PIR:B84449 RefSeq:NP_027544.1 UniGene:At.27373
ProteinModelPortal:Q9ZQ85 SMR:Q9ZQ85 IntAct:Q9ZQ85
EnsemblPlants:AT2G03500.1 GeneID:814878 KEGG:ath:AT2G03500
TAIR:At2g03500 eggNOG:NOG301728 InParanoid:Q9ZQ85 OMA:QSYSMLL
PhylomeDB:Q9ZQ85 ProtClustDB:CLSN2687945 ArrayExpress:Q9ZQ85
Genevestigator:Q9ZQ85 Uniprot:Q9ZQ85
Length = 432
Score = 144 (55.7 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216
+K + W+ LH RF+QA++ +G + A PK+I E M V GLT + V SHLQKYR+ +R
Sbjct: 232 RKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRR 291
>UNIPROTKB|Q74DM7 [details] [associations]
symbol:cheY34H-1 "Response receiver CheY associated with
MCPs of class 34H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P08402
RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7 GeneID:2688101
KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC ProtClustDB:CLSK828284
BioCyc:GSUL243231:GH27-1257-MONOMER Uniprot:Q74DM7
Length = 121
Score = 122 (48.0 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 26/77 (33%), Positives = 49/77 (63%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKAL 65
+ALA + R +D+V+TDL+MP ++GI L K + N + P+++++++ +ES +
Sbjct: 37 DALAKLAGTR-VDMVITDLNMPNLDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGK 95
Query: 66 ASGVAFYILKPLNPDDL 82
A+G +I+KP P+ L
Sbjct: 96 AAGATGWIVKPFKPEQL 112
>TIGR_CMR|GSU_1289 [details] [associations]
symbol:GSU_1289 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P08402 RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7
GeneID:2688101 KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC
ProtClustDB:CLSK828284 BioCyc:GSUL243231:GH27-1257-MONOMER
Uniprot:Q74DM7
Length = 121
Score = 122 (48.0 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 26/77 (33%), Positives = 49/77 (63%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKAL 65
+ALA + R +D+V+TDL+MP ++GI L K + N + P+++++++ +ES +
Sbjct: 37 DALAKLAGTR-VDMVITDLNMPNLDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGK 95
Query: 66 ASGVAFYILKPLNPDDL 82
A+G +I+KP P+ L
Sbjct: 96 AAGATGWIVKPFKPEQL 112
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 122 (48.0 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
EA+ T R R D+V D+ MP NGIE +EI V++ S+ +ES++ KA +
Sbjct: 38 EAVVTFRDVRP-DVVTLDIIMPVKNGIEALREIMAIDPKARVVICSAVGQESLVDKARSV 96
Query: 68 GVAFYILKPLNPDDLKNV 85
G +ILKP NP+ +K+V
Sbjct: 97 GAKDFILKPFNPERVKDV 114
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 122 (48.0 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76
++L++TD MP M G EL K++ E +PV+++SS++ + I K LASG ++ KP
Sbjct: 76 VNLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKP 135
Query: 77 LNPDDLKNV 85
L D++ +
Sbjct: 136 LKLSDVEKL 144
>TAIR|locus:2031210 [details] [associations]
symbol:AT1G25550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010167 "response to nitrate" evidence=RCA] [GO:0015706
"nitrate transport" evidence=RCA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237574
ProtClustDB:CLSN2687960 EMBL:AF326890 EMBL:AF339707 EMBL:AF372906
EMBL:BT002674 IPI:IPI00533337 RefSeq:NP_564236.1 UniGene:At.25159
ProteinModelPortal:Q9FPE8 SMR:Q9FPE8 IntAct:Q9FPE8 STRING:Q9FPE8
PRIDE:Q9FPE8 EnsemblPlants:AT1G25550.1 GeneID:839142
KEGG:ath:AT1G25550 TAIR:At1g25550 InParanoid:Q9FPE8 OMA:ECSERTT
PhylomeDB:Q9FPE8 ArrayExpress:Q9FPE8 Genevestigator:Q9FPE8
Uniprot:Q9FPE8
Length = 344
Score = 142 (55.0 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 149 QTKQNATAPKKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHL 207
+ ++ + + +K + W+ LH RFL A++ +G A PK+I + M V GLT + V SHL
Sbjct: 199 EEQKQSHSNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHL 258
Query: 208 QKYRIFLKRVA 218
QKYR+ +R A
Sbjct: 259 QKYRLHTRRPA 269
>TAIR|locus:2089260 [details] [associations]
symbol:AT3G13040 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0015996 "chlorophyll catabolic process"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY050889 EMBL:AY096674
IPI:IPI00543771 RefSeq:NP_566442.1 RefSeq:NP_974298.1
UniGene:At.11993 ProteinModelPortal:Q949U2 SMR:Q949U2 STRING:Q949U2
PRIDE:Q949U2 EnsemblPlants:AT3G13040.1 EnsemblPlants:AT3G13040.2
GeneID:820490 KEGG:ath:AT3G13040 OMA:RIEEHAK
ProtClustDB:CLSN2688327 ArrayExpress:Q949U2 Genevestigator:Q949U2
Uniprot:Q949U2
Length = 449
Score = 144 (55.7 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 38/112 (33%), Positives = 61/112 (54%)
Query: 154 ATAPKKPKVAWTDSLHNRFLQAIRHI-GLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212
+ A +K ++ WT LH F++A+ + G EKA PK + + MNV GLT +V SHLQKYR+
Sbjct: 236 SAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRL 295
Query: 213 --FL--KRVAEQGASAMGKTLALRSSFASGHVSMMLQEAHEFSQVRDQQQQM 260
++ K+ ++ ++ K LAL S A +Q + Q+Q+
Sbjct: 296 AKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLTEALRMQMEVQKQL 347
>TAIR|locus:2206415 [details] [associations]
symbol:APL "ALTERED PHLOEM DEVELOPMENT" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010088 "phloem development"
evidence=IMP] [GO:0010089 "xylem development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0010089 EMBL:AC007202 EMBL:AY045662 EMBL:AY143841
EMBL:AK316719 IPI:IPI00538563 IPI:IPI00542908 PIR:D96825
RefSeq:NP_565209.1 RefSeq:NP_849905.1 UniGene:At.23550 HSSP:O49397
ProteinModelPortal:Q9SAK5 SMR:Q9SAK5 IntAct:Q9SAK5 STRING:Q9SAK5
PRIDE:Q9SAK5 EnsemblPlants:AT1G79430.2 GeneID:844281
KEGG:ath:AT1G79430 TAIR:At1g79430 eggNOG:NOG261203
HOGENOM:HOG000239390 InParanoid:Q94AW3 OMA:CQTLAGE PhylomeDB:Q9SAK5
ProtClustDB:CLSN2689327 Genevestigator:Q9SAK5 GO:GO:0010088
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 Uniprot:Q9SAK5
Length = 358
Score = 142 (55.0 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 44/126 (34%), Positives = 65/126 (51%)
Query: 155 TAPKKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIF 213
T KP++ WT LH RF+ A+ +G +KA PK I+ M V GLT ++ SHLQK+R+
Sbjct: 30 TTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89
Query: 214 LKRVAEQG---------ASAMG--KTLALRSSFASGHVSMMLQEA----HEFSQVRDQQQ 258
+ E G ASAM + +A S S +++ M E HE +V+ +
Sbjct: 90 KQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQ-RHL 148
Query: 259 QMRTSA 264
Q+R A
Sbjct: 149 QLRIEA 154
>TAIR|locus:2171427 [details] [associations]
symbol:KAN "KANADI" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;ISS;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009887 "organ morphogenesis" evidence=IMP]
[GO:0009956 "radial pattern formation" evidence=IMP] [GO:0010051
"xylem and phloem pattern formation" evidence=IMP] [GO:0010158
"abaxial cell fate specification" evidence=IMP] [GO:0048440 "carpel
development" evidence=IGI] [GO:0048481 "ovule development"
evidence=IGI] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=IGI] [GO:0009943 "adaxial/abaxial
axis specification" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
EMBL:AB005242 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 PROSITE:PS51293
GO:GO:0010051 GO:GO:0048481 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0010158 GO:GO:0009944
GO:GO:0009956 EMBL:AY030192 EMBL:AY037864 EMBL:AY048688
EMBL:BT026436 IPI:IPI00535955 RefSeq:NP_568334.1 UniGene:At.6466
UniGene:At.66763 ProteinModelPortal:Q93WJ9 SMR:Q93WJ9 IntAct:Q93WJ9
STRING:Q93WJ9 PRIDE:Q93WJ9 EnsemblPlants:AT5G16560.1 GeneID:831518
KEGG:ath:AT5G16560 TAIR:At5g16560 eggNOG:NOG330873
HOGENOM:HOG000241649 InParanoid:Q93WJ9 OMA:GINGNEV PhylomeDB:Q93WJ9
ProtClustDB:CLSN2917650 Genevestigator:Q93WJ9 Uniprot:Q93WJ9
Length = 403
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216
+ P++ WT SLH RF+ A+ +G E+A PK +LE M+V LT +V SHLQ YR +K
Sbjct: 218 RAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT-VKT 276
Query: 217 VAEQGASAMG 226
+ AS+ G
Sbjct: 277 TNKPAASSDG 286
>TIGR_CMR|GSU_0104 [details] [associations]
symbol:GSU_0104 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P10957 RefSeq:NP_951166.1
ProteinModelPortal:Q74GY9 GeneID:2688136 KEGG:gsu:GSU0104
PATRIC:22022954 OMA:NVAVARD ProtClustDB:CLSK309460
BioCyc:GSUL243231:GH27-65-MONOMER Uniprot:Q74GY9
Length = 129
Score = 120 (47.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 21 LVVTDLHMPEMNGIELQKEI-NEEFT-HLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
LV+ DL +P+MNG+E+ + I +EE T H PV+V+SS E+ ++K GV Y+ KP++
Sbjct: 55 LVLLDLKLPKMNGLEVLRTIRSEERTRHTPVIVISSSQEETDVVKCRELGVLAYLTKPID 114
Query: 79 PDDL 82
+ +
Sbjct: 115 GEKI 118
>TAIR|locus:2085984 [details] [associations]
symbol:AT3G25790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
EMBL:AB028607 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237574 ProtClustDB:CLSN2687791 IPI:IPI00546166
RefSeq:NP_566778.1 UniGene:At.37325 ProteinModelPortal:Q9LS00
SMR:Q9LS00 EnsemblPlants:AT3G25790.1 GeneID:822170
KEGG:ath:AT3G25790 TAIR:At3g25790 InParanoid:Q9LS00 OMA:AYKREIS
PhylomeDB:Q9LS00 Genevestigator:Q9LS00 Uniprot:Q9LS00
Length = 357
Score = 140 (54.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216
+K + W+ LH RFL A++ +G A PK+I + M V GLT + V SHLQKYR+ +R
Sbjct: 195 RKNRRCWSQELHRRFLNALKQLGGPHVATPKQIRDIMKVDGLTNDEVKSHLQKYRLHARR 254
Query: 217 VAE 219
++
Sbjct: 255 PSQ 257
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 119 (46.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/88 (34%), Positives = 53/88 (60%)
Query: 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEI----NEEFTHLPVMVMSSDDR 57
T T+ EAL + ++ DL++TDL+MPEM+GI +++ N +FT PV+V++++ +
Sbjct: 30 TFTKGSEALDMLGKEK-FDLIITDLNMPEMDGITFIQKVRALSNYKFT--PVIVLTTESQ 86
Query: 58 ESVIMKALASGVAFYILKPLNPDDLKNV 85
+ +A +G +I KP P+ L V
Sbjct: 87 AAKKEQARRAGATAWITKPFTPEQLLGV 114
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 119 (46.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/88 (34%), Positives = 53/88 (60%)
Query: 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEI----NEEFTHLPVMVMSSDDR 57
T T+ EAL + ++ DL++TDL+MPEM+GI +++ N +FT PV+V++++ +
Sbjct: 30 TFTKGSEALDMLGKEK-FDLIITDLNMPEMDGITFIQKVRALSNYKFT--PVIVLTTESQ 86
Query: 58 ESVIMKALASGVAFYILKPLNPDDLKNV 85
+ +A +G +I KP P+ L V
Sbjct: 87 AAKKEQARRAGATAWITKPFTPEQLLGV 114
>TIGR_CMR|GSU_0008 [details] [associations]
symbol:GSU_0008 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
HSSP:P06143 RefSeq:NP_951070.1 ProteinModelPortal:Q74H84
GeneID:2688683 KEGG:gsu:GSU0008 PATRIC:22022753
HOGENOM:HOG000135130 OMA:HRFEAGR ProtClustDB:CLSK924354
BioCyc:GSUL243231:GH27-8-MONOMER Uniprot:Q74H84
Length = 516
Score = 141 (54.7 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/90 (31%), Positives = 53/90 (58%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
+EAL + + DLV+ D+ MP M+GIE+ + I + + L V++M++ E + ++A+
Sbjct: 37 IEALDALE-RESFDLVLLDIRMPRMDGIEVLERIRDRWPDLVVIMMTAHGSEDIAVEAMK 95
Query: 67 SGVAFYILKPLNPDDLKNVWQYAMTYKKAK 96
G YI KP + DD+K + A+ + + +
Sbjct: 96 KGAVDYISKPFSSDDMKKRVERAIQFNRTR 125
>TAIR|locus:2100880 [details] [associations]
symbol:AT3G04450 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00540345 RefSeq:NP_187095.2 UniGene:At.40835
ProteinModelPortal:F4J3P7 SMR:F4J3P7 PRIDE:F4J3P7
EnsemblPlants:AT3G04450.1 GeneID:819601 KEGG:ath:AT3G04450
OMA:WPDWADQ Uniprot:F4J3P7
Length = 442
Score = 140 (54.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 159 KPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYR 211
K ++ WT LH F++AI +G E+A PK +L+ +N PGLT +V SHLQKYR
Sbjct: 238 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYR 291
>TIGR_CMR|BA_5661 [details] [associations]
symbol:BA_5661 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034813 HSSP:P10957 RefSeq:NP_847809.1
RefSeq:YP_022338.1 RefSeq:YP_031501.1 ProteinModelPortal:Q81JP1
DNASU:1085395 EnsemblBacteria:EBBACT00000009931
EnsemblBacteria:EBBACT00000017478 EnsemblBacteria:EBBACT00000024022
GeneID:1085395 GeneID:2816223 GeneID:2851759 KEGG:ban:BA_5661
KEGG:bar:GBAA_5661 KEGG:bat:BAS5263 OMA:CAHELVG
ProtClustDB:CLSK917695 BioCyc:BANT260799:GJAJ-5337-MONOMER
BioCyc:BANT261594:GJ7F-5516-MONOMER Uniprot:Q81JP1
Length = 215
Score = 132 (51.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
EAL V + + D+V+ DL+MPEM+G+E I +E+ + V+V++S ++ ++ AL +
Sbjct: 39 EALVKVG-ETNPDVVLMDLYMPEMDGVEATACIKKEYPDVKVIVLTSFSDQAHVLPALRA 97
Query: 68 GVAFYILKPLNPDDL 82
G + YILK + PD L
Sbjct: 98 GASGYILKDVEPDQL 112
>TAIR|locus:2028346 [details] [associations]
symbol:KAN2 "AT1G32240" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048481 "ovule
development" evidence=IGI] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=IGI] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0010162 "seed dormancy
process" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0030154 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
GO:GO:0048481 EMBL:AC084110 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0009944
HOGENOM:HOG000241649 EMBL:AY048689 EMBL:BT029211 EMBL:AB493491
IPI:IPI00539948 RefSeq:NP_564392.1 UniGene:At.25340
ProteinModelPortal:Q9C616 SMR:Q9C616 STRING:Q9C616
EnsemblPlants:AT1G32240.1 GeneID:840116 KEGG:ath:AT1G32240
TAIR:At1g32240 eggNOG:NOG325874 InParanoid:Q9C616 OMA:SDVYENG
PhylomeDB:Q9C616 ProtClustDB:CLSN2715231 Genevestigator:Q9C616
Uniprot:Q9C616
Length = 388
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216
+ P++ WT +LH RF+ A+ +G E+A PK +LE M+V LT +V SHLQ YR +
Sbjct: 212 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV--K 269
Query: 217 VAEQGASAMGKT 228
++ A++ G++
Sbjct: 270 TTDKAAASSGQS 281
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 132 (51.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 11 ATVRIQR-DIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALAS 67
A V R +DL++TD MP M G EL K+I E F +PV++MSS++ + I + L
Sbjct: 79 AAVEFDRLKVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEE 138
Query: 68 GVAFYILKPLNPDDLKNVWQY 88
G ++LKP+ D+K + Y
Sbjct: 139 GAEDFLLKPVKLADVKRLRSY 159
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 116 (45.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVI 61
+ +R EA+ VR + D+V+TD MP MNG+EL + E LPVM+++ + +I
Sbjct: 32 SASRGAEAVDIVR-KTTFDMVITDFSMPGMNGLELAAAVKELHPDLPVMMVTCEVTSDLI 90
Query: 62 MKALASGVAFYILKPLN 78
A G+ + KP+N
Sbjct: 91 EMATDVGICRVLDKPVN 107
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 137 (53.3 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 29/92 (31%), Positives = 53/92 (57%)
Query: 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
+T +ALA + + +DL+++DL M MNG+EL + E + ++PV+V+++
Sbjct: 31 LTAVSGAQALALLE-REHVDLLISDLIMEGMNGLELLDRVRERYPNVPVIVVTARGSVES 89
Query: 61 IMKALASGVAFYILKPLNPDDLKNVWQYAMTY 92
++A+ G Y+ KP NP+ L+ Q A+ Y
Sbjct: 90 AVEAMRRGAYDYLAKPFNPEVLRITLQRALDY 121
>TAIR|locus:2063141 [details] [associations]
symbol:AT2G40260 "AT2G40260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC007020
HOGENOM:HOG000090767 IPI:IPI00530168 PIR:C84827 RefSeq:NP_181555.1
UniGene:At.53083 ProteinModelPortal:Q9SIZ5 SMR:Q9SIZ5 PRIDE:Q9SIZ5
EnsemblPlants:AT2G40260.1 GeneID:818618 KEGG:ath:AT2G40260
TAIR:At2g40260 eggNOG:NOG267620 InParanoid:Q9SIZ5 OMA:FRINSHE
PhylomeDB:Q9SIZ5 ProtClustDB:CLSN2913060 ArrayExpress:Q9SIZ5
Genevestigator:Q9SIZ5 Uniprot:Q9SIZ5
Length = 410
Score = 136 (52.9 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYR 211
K P++ WT LH FLQA+ +G ++A PK +L+ MNV GL+ +V SHLQ YR
Sbjct: 81 KTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYR 135
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 114 (45.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 20 DLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
D +VTD +MP M GI+L +++ +E LPV++++++ + I++A +GV Y++KP
Sbjct: 47 DFLVTDWNMPGMTGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPF 106
Query: 78 NPDDLK 83
LK
Sbjct: 107 TAQALK 112
>UNIPROTKB|Q9KSH9 [details] [associations]
symbol:VC_1277 "Transcriptional regulator, LuxR family"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 KO:K07684 HSSP:P10957 PIR:H82218
RefSeq:NP_230922.1 ProteinModelPortal:Q9KSH9 DNASU:2614731
GeneID:2614731 KEGG:vch:VC1277 PATRIC:20081634 OMA:VIRVVIA
ProtClustDB:CLSK874291 Uniprot:Q9KSH9
Length = 216
Score = 128 (50.1 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVI 61
T + +EAL V++ + D+V+ D+ MP MNGIE + I EE H V++++ D I
Sbjct: 39 TASNGLEALELVKLHQP-DVVLMDVSMPIMNGIEATRLIKEEVPHTKVLMLTMHDNREYI 97
Query: 62 MKALASGVAFYILKPLN 78
M+ + +G Y+LK ++
Sbjct: 98 MQVMQAGAMGYMLKEIS 114
>TIGR_CMR|VC_1277 [details] [associations]
symbol:VC_1277 "transcriptional regulator, LuxR family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 KO:K07684 HSSP:P10957 PIR:H82218
RefSeq:NP_230922.1 ProteinModelPortal:Q9KSH9 DNASU:2614731
GeneID:2614731 KEGG:vch:VC1277 PATRIC:20081634 OMA:VIRVVIA
ProtClustDB:CLSK874291 Uniprot:Q9KSH9
Length = 216
Score = 128 (50.1 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVI 61
T + +EAL V++ + D+V+ D+ MP MNGIE + I EE H V++++ D I
Sbjct: 39 TASNGLEALELVKLHQP-DVVLMDVSMPIMNGIEATRLIKEEVPHTKVLMLTMHDNREYI 97
Query: 62 MKALASGVAFYILKPLN 78
M+ + +G Y+LK ++
Sbjct: 98 MQVMQAGAMGYMLKEIS 114
>TAIR|locus:2170199 [details] [associations]
symbol:AT5G06800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AK226644 IPI:IPI00528070
RefSeq:NP_196298.2 UniGene:At.50439 ProteinModelPortal:Q0WVU3
SMR:Q0WVU3 PRIDE:Q0WVU3 EnsemblPlants:AT5G06800.1 GeneID:830570
KEGG:ath:AT5G06800 TAIR:At5g06800 eggNOG:NOG298644
HOGENOM:HOG000241107 InParanoid:Q0WVU3 OMA:MDNINFE
ProtClustDB:CLSN2918619 Genevestigator:Q0WVU3 Uniprot:Q0WVU3
Length = 375
Score = 134 (52.2 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 159 KPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212
K ++ WT LH +F++ + +G +KA PK IL+ M+ GLT +V SHLQKYRI
Sbjct: 192 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRI 246
>UNIPROTKB|Q0J235 [details] [associations]
symbol:RL9 "Probable transcription factor RL9"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IDA] [GO:0010158 "abaxial cell fate specification"
evidence=IMP] [GO:0010229 "inflorescence development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AP008215 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0010158 GO:GO:0010229
eggNOG:NOG330873 HOGENOM:HOG000241649 EMBL:AP005904 EMBL:FJ268747
EMBL:FJ268748 RefSeq:NP_001063097.1 UniGene:Os.5597 PRIDE:Q0J235
GeneID:4346973 KEGG:osa:4346973 Gramene:Q0J235 OMA:DALPWRH
ProtClustDB:CLSN2697690 Uniprot:Q0J235
Length = 532
Score = 136 (52.9 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216
+ P++ WT +LH RF+ A+ +G E+A PK +LE M+V LT +V SHLQ YR +K
Sbjct: 323 RAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT-VKS 381
Query: 217 VAEQGASA 224
+ AS+
Sbjct: 382 TDKPAASS 389
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 128 (50.1 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
+I+L++TD MP M G +L K++ E F +PV++MSS++ + I + L G + LK
Sbjct: 71 EINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLK 130
Query: 76 PLNPDDLKNVWQYAMTYK----KAKSISIDEI 103
P+ DL + + M K K ++I+EI
Sbjct: 131 PVKLADLTKLKPHMMKTKLKKESEKPVAIEEI 162
>TIGR_CMR|CPS_1260 [details] [associations]
symbol:CPS_1260 "putative nitrate/nitrite DNA-binding
response regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
GO:GO:0035556 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 eggNOG:COG2197 HOGENOM:HOG000034813
KO:K07684 RefSeq:YP_268003.1 ProteinModelPortal:Q486L2
STRING:Q486L2 GeneID:3521261 KEGG:cps:CPS_1260 PATRIC:21465757
OMA:THKRNIK ProtClustDB:CLSK938262
BioCyc:CPSY167879:GI48-1341-MONOMER Uniprot:Q486L2
Length = 206
Score = 126 (49.4 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 34/107 (31%), Positives = 58/107 (54%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
+AL ++ D D+V+ D++MPEM+G+ + + I E+ V+++S D + I+ A+
Sbjct: 38 QALELIK-SLDFDIVLMDINMPEMDGMYVLELIKEQDLDCKVLMLSMHDNKEYILGAMRH 96
Query: 68 GVAFYILKPLNPDDLKNVWQYAMTYKKAKSISIDEIGSFELAGFSAG 114
G YILK + +L + ++ K S + EI S ELAG G
Sbjct: 97 GADGYILKDVPGAELIEAIKKVISGKHYFSSEVTEILSKELAGEQRG 143
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
+++L++TD MP M G +L K++ E F +PV++MSS++ + I + L G + LK
Sbjct: 73 EVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLK 132
Query: 76 PLNPDDLKNVWQYAMTYKKAKSISIDEI 103
P+ DL + + M K K+ ++EI
Sbjct: 133 PVRLADLNKLKPHMMK-TKLKNQKLEEI 159
>TIGR_CMR|BA_2265 [details] [associations]
symbol:BA_2265 "DNA-binding response regulator, LuxR
family" species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034813 HSSP:P11470 KO:K02479 RefSeq:NP_844654.1
RefSeq:YP_018910.1 RefSeq:YP_028372.1 ProteinModelPortal:Q81QZ6
SMR:Q81QZ6 DNASU:1085185 EnsemblBacteria:EBBACT00000013044
EnsemblBacteria:EBBACT00000015415 EnsemblBacteria:EBBACT00000020683
GeneID:1085185 GeneID:2817594 GeneID:2851354 KEGG:ban:BA_2265
KEGG:bar:GBAA_2265 KEGG:bat:BAS2109 OMA:QGNANFH
ProtClustDB:CLSK916553 BioCyc:BANT260799:GJAJ-2177-MONOMER
BioCyc:BANT261594:GJ7F-2253-MONOMER Uniprot:Q81QZ6
Length = 209
Score = 126 (49.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
+AL VR +R D+V+ DL MP+M+GIE K+I + + ++++SS + ++ AL +
Sbjct: 39 DALTFVRTERP-DVVLMDLSMPKMDGIEATKQIKQYDETIKILILSSFSEQDYVLPALEA 97
Query: 68 GVAFYILKPLNPDDL 82
G Y LK + P+ L
Sbjct: 98 GADGYQLKEVQPEQL 112
>TAIR|locus:2139865 [details] [associations]
symbol:PHR1 "phosphate starvation response 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016036 "cellular response to phosphate starvation"
evidence=IMP] [GO:0055063 "sulfate ion homeostasis" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0071486 "cellular
response to high light intensity" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0016036 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0071486
HOGENOM:HOG000064669 EMBL:AY081290 EMBL:BT002187 EMBL:AJ310799
IPI:IPI00520685 RefSeq:NP_194590.2 UniGene:At.4525
ProteinModelPortal:Q94CL7 SMR:Q94CL7 PaxDb:Q94CL7 PRIDE:Q94CL7
EnsemblPlants:AT4G28610.1 GeneID:828979 KEGG:ath:AT4G28610
TAIR:At4g28610 eggNOG:NOG275307 InParanoid:Q94CL7 OMA:EKQCKSG
PhylomeDB:Q94CL7 ProtClustDB:CLSN2915055 Genevestigator:Q94CL7
GO:GO:0055063 Uniprot:Q94CL7
Length = 409
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 159 KPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYR 211
K ++ WT LH F++A+ +G E+A PK +L+ M V GLT +V SHLQKYR
Sbjct: 225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYR 278
>TIGR_CMR|CJE_1664 [details] [associations]
symbol:CJE_1664 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_179645.1 ProteinModelPortal:Q5HSU0
STRING:Q5HSU0 GeneID:3232292 KEGG:cjr:CJE1664 PATRIC:20045123
OMA:KRNICEL ProtClustDB:CLSK879286
BioCyc:CJEJ195099:GJC0-1694-MONOMER Uniprot:Q5HSU0
Length = 226
Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/74 (31%), Positives = 49/74 (66%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
DLV+TD+ MP M+G+++ +EI E +P++V+S+ + +++++ G+ Y++KP++
Sbjct: 53 DLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGIDKYLIKPVDI 112
Query: 80 DDLKNVWQYAMTYK 93
++L V Y + K
Sbjct: 113 EELFKVLDYLIGEK 126
>TAIR|locus:2010297 [details] [associations]
symbol:AT1G49560 "AT1G49560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011807 EMBL:AK221631
IPI:IPI00546952 PIR:B96532 RefSeq:NP_564549.1 UniGene:At.38204
ProteinModelPortal:Q9FX84 SMR:Q9FX84 EnsemblPlants:AT1G49560.1
GeneID:841380 KEGG:ath:AT1G49560 TAIR:At1g49560 InParanoid:Q9FX84
OMA:SSMEDVE PhylomeDB:Q9FX84 ProtClustDB:CLSN2917204
Genevestigator:Q9FX84 Uniprot:Q9FX84
Length = 333
Score = 131 (51.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 34/84 (40%), Positives = 47/84 (55%)
Query: 151 KQNATAPKKPKVAWTDSLHNRFLQAIRHIGLEK-AVPKKILEFMNVPGLTRENVASHLQK 209
KQ A +K + W LH RF+ A++ +G A PK+I E M GLT + V SHLQK
Sbjct: 186 KQQAL--RKQRRCWNPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQK 243
Query: 210 YRIFLKRV---AE-QGASAMGKTL 229
YR+ +++ AE Q A +G L
Sbjct: 244 YRLHIRKPNSNAEKQSAVVLGFNL 267
>TAIR|locus:2041539 [details] [associations]
symbol:AT2G42660 "AT2G42660" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC006931 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AC007087 EMBL:AY074640 EMBL:AY078938
IPI:IPI00542274 PIR:F84856 RefSeq:NP_181794.1 UniGene:At.37023
ProteinModelPortal:Q9SJJ0 SMR:Q9SJJ0 PaxDb:Q9SJJ0 PRIDE:Q9SJJ0
EnsemblPlants:AT2G42660.1 GeneID:818866 KEGG:ath:AT2G42660
TAIR:At2g42660 eggNOG:NOG258430 HOGENOM:HOG000153491 OMA:NREETVE
PhylomeDB:Q9SJJ0 ProtClustDB:CLSN2913320 ArrayExpress:Q9SJJ0
Genevestigator:Q9SJJ0 Uniprot:Q9SJJ0
Length = 255
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 160 PKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYR 211
P++ WT LH F++A++ +G ++A PK +LE MN+ GL+ +V SHLQ YR
Sbjct: 51 PRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQMYR 103
>TAIR|locus:2115070 [details] [associations]
symbol:AT4G37180 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00537470
RefSeq:NP_849513.1 UniGene:At.4657 ProteinModelPortal:F4JRB0
SMR:F4JRB0 PRIDE:F4JRB0 EnsemblPlants:AT4G37180.2 GeneID:829872
KEGG:ath:AT4G37180 OMA:SCRNDET Uniprot:F4JRB0
Length = 363
Score = 131 (51.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216
K+ + W+ LH +F+ A+ +G + A PK+I + M V GLT + V SHLQKYR+ +++
Sbjct: 216 KEQRRRWSQELHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMHIRK 275
Score = 41 (19.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 40 INEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVW 86
+NEE L V + + D + +AS F ++ P+ K W
Sbjct: 73 LNEEIVFLCVAIGALKDEARKGLSLMASNGKFDDVERAKPETDKKSW 119
>TAIR|locus:505006489 [details] [associations]
symbol:KAN3 "AT4G17695" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0007275
GO:GO:0005634 GO:GO:0030154 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:Z97344 HOGENOM:HOG000241649 EMBL:AY048690 IPI:IPI00544036
RefSeq:NP_567535.1 UniGene:At.26411 ProteinModelPortal:Q941I2
SMR:Q941I2 PaxDb:Q941I2 PRIDE:Q941I2 EnsemblPlants:AT4G17695.1
GeneID:827490 KEGG:ath:AT4G17695 TAIR:At4g17695 eggNOG:NOG253351
InParanoid:Q941I2 OMA:SSNENEW PhylomeDB:Q941I2
ProtClustDB:CLSN2917571 Genevestigator:Q941I2 Uniprot:Q941I2
Length = 322
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 158 KKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216
+ P++ WT +LH F+ A++ +G E+A PK +LE M+V LT +V SHLQ YR +
Sbjct: 163 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTI--K 220
Query: 217 VAEQGASAMGKT 228
E+ ++ G++
Sbjct: 221 STEKPTTSSGQS 232
>UNIPROTKB|Q4GZK9 [details] [associations]
symbol:rr2 "Type A response regulator 2" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938071
ProteinModelPortal:Q4GZK9 KEGG:dosa:Os02t0557800-01 Gramene:Q4GZK9
Uniprot:Q4GZK9
Length = 252
Score = 125 (49.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 31/96 (32%), Positives = 53/96 (55%)
Query: 9 ALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKALA 66
A A + ID+V+TD MPEM G +L K I +PV+VMSS++ I + L
Sbjct: 74 AAAAAANDQAIDIVLTDYCMPEMTGYDLLKAIKALGSPNPIPVVVMSSENEPQRISRCLT 133
Query: 67 SGVAFYILKPLNPDDLKNVWQYAMTYKKAKSISIDE 102
+G +ILKPL +D++ + + + + +++ D+
Sbjct: 134 AGAEDFILKPLKMNDVQRLRKCSGATRPKSAVAGDD 169
Score = 40 (19.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 255 DQQQQMRTSAFLPGYASGVSA 275
+QQQQ + S+ L G A ++A
Sbjct: 188 EQQQQQQRSSHLAGLAMVMNA 208
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 124 (48.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76
++L+VTD MP ++G +L K+I E F +PV++MSS++ I + L G ++LKP
Sbjct: 79 VNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKP 138
Query: 77 LNPDDLKNVWQYAM 90
+ D+K + Q M
Sbjct: 139 VKLADVKRIKQLIM 152
>DICTYBASE|DDB_G0282289 [details] [associations]
symbol:dhkD "histidine kinase D" species:44689
"Dictyostelium discoideum" [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0023014 "signal transduction by
phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0004673 "protein histidine kinase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
"kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112
PROSITE:PS50113 SMART:SM00091 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
dictyBase:DDB_G0282289 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0005622 GO:GO:0023014 eggNOG:COG2202 SMART:SM00086
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 EMBL:AF361475 EMBL:AF029704
RefSeq:XP_640257.1 HSSP:P0A5Z8 ProteinModelPortal:Q54SP4
EnsemblProtists:DDB0215384 GeneID:8623516 KEGG:ddi:DDB_G0282289
OMA:TIERCAS Uniprot:Q54SP4
Length = 1546
Score = 144 (55.7 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 35/107 (32%), Positives = 63/107 (58%)
Query: 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRE 58
VT VE + R DL+VTD MP M+G E+ +++ +E+F ++P++++++ E
Sbjct: 596 VTAFDGVEGIEKTRAITP-DLIVTDCMMPRMSGDEMVEQLRSDEQFDNIPILLLTAKADE 654
Query: 59 SVIMKALASGVAFYILKPLNPDDLKNVWQYAMTYKKAKSISIDEIGS 105
++ +K L +GV+ Y+ KP + ++L MT KKAK +E+ S
Sbjct: 655 NLRIKLLQNGVSDYVNKPFSSEELVARVVNLMTMKKAKQFLQEELSS 701
Score = 43 (20.2 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 332 GSSGSNATEANPLSRGGLAAGLMNQMYQQKSQLRPNPYDNYN 373
GSS SN++ +N LS + + Q + N +N N
Sbjct: 1011 GSSSSNSSPSNQLSCSSSPPLIKKPFFSQPTNYINNNNNNNN 1052
Score = 43 (20.2 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 14/63 (22%), Positives = 21/63 (33%)
Query: 463 SSSSARFDNATYQIPSAFAGVNEQENTXXXXXXXXXXXYGPGNNAQNDFTNFAPINNASV 522
SSS + P+ + N N NN N++ N+ NN +
Sbjct: 1026 SSSPPLIKKPFFSQPTNYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNY---NNNNS 1082
Query: 523 NGN 525
N N
Sbjct: 1083 NNN 1085
Score = 42 (19.8 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 505 NNAQNDFTNFAPINNASVNGNTAQPERLGE 534
NN N+ N+ NN N N+ E+LG+
Sbjct: 1124 NNHNNNNNNYHHNNNN--NNNSNNNEKLGK 1151
Score = 40 (19.1 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 321 LYQANSAGKTCGSSGSNATEANPLSRG 347
LY +S G + G SGS + + + + G
Sbjct: 767 LYDIDSGGSSGGGSGSISGDDSTVRTG 793
Score = 38 (18.4 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 504 GNNAQNDFTNFAPINNASVNGNTAQPERL 532
G N + FT PI S + N++ +L
Sbjct: 995 GENKGSQFTVVLPIIKGSSSSNSSPSNQL 1023
Score = 37 (18.1 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 505 NNAQNDFTNFAPINNASVNGN 525
NN N++ N NN + N N
Sbjct: 1071 NNNYNNYNNNNSNNNNNSNNN 1091
Score = 37 (18.1 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 505 NNAQNDFTNFAPINNASVNGNTAQPE 530
NN N+ N NN S++ N P+
Sbjct: 1322 NNNNNNNNNSNNNNNNSMSPNLRSPK 1347
>TIGR_CMR|CPS_0397 [details] [associations]
symbol:CPS_0397 "nitrogen regulation protein NR(I)"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006808 "regulation of
nitrogen utilization" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0009399 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K07712 GO:GO:0050906 TIGRFAMs:TIGR01818 RefSeq:YP_267155.1
ProteinModelPortal:Q489V9 SMR:Q489V9 STRING:Q489V9 GeneID:3520592
KEGG:cps:CPS_0397 PATRIC:21464159 OMA:KELAVEP
BioCyc:CPSY167879:GI48-492-MONOMER Uniprot:Q489V9
Length = 466
Score = 131 (51.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/79 (29%), Positives = 53/79 (67%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSS-DDRESVIMKALASGVAFYILKPLN 78
+++++D+ MP ++G+EL K +N++ +H+PV++M++ D +S + A G Y+ KP +
Sbjct: 49 EIIISDIRMPNIDGMELLKRLNKQHSHIPVIIMTAHSDLDSAV-NAYQGGAFEYLPKPFD 107
Query: 79 PDDLKNVWQYAMTYKKAKS 97
D+ N+ + A+T+ + ++
Sbjct: 108 IDEAINLSKRALTHAREQN 126
>TAIR|locus:2038957 [details] [associations]
symbol:AT2G20400 "AT2G20400" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT006119
EMBL:AK118313 IPI:IPI00521384 RefSeq:NP_179630.2 UniGene:At.43867
ProteinModelPortal:Q8GXC2 SMR:Q8GXC2 PaxDb:Q8GXC2 PRIDE:Q8GXC2
EnsemblPlants:AT2G20400.1 GeneID:816559 KEGG:ath:AT2G20400
TAIR:At2g20400 eggNOG:NOG265443 HOGENOM:HOG000064669
InParanoid:Q8GXC2 OMA:ANSMENR PhylomeDB:Q8GXC2
ProtClustDB:CLSN2918042 Genevestigator:Q8GXC2 Uniprot:Q8GXC2
Length = 397
Score = 133 (51.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 153 NATAPKKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYR 211
NA A K ++ WT LH F+ A+ +G +A PK +L+ M V GLT +V SHLQKYR
Sbjct: 225 NAAAAAKGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQKYR 284
Score = 38 (18.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 76 PLNPDDLKNVWQYAMTYKKAKSI 98
PLN DD ++ Y + A S+
Sbjct: 16 PLNDDDANSMKNYPLNDDDANSM 38
>TAIR|locus:2204518 [details] [associations]
symbol:AT1G14600 "AT1G14600" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AC010657 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AJ630486 EMBL:AY568658
IPI:IPI00523105 RefSeq:NP_172912.3 UniGene:At.41962
ProteinModelPortal:Q700D9 SMR:Q700D9 EnsemblPlants:AT1G14600.1
GeneID:838022 KEGG:ath:AT1G14600 TAIR:At1g14600 eggNOG:NOG329381
HOGENOM:HOG000239342 InParanoid:Q700D9 OMA:NIMNMER
Genevestigator:Q700D9 Uniprot:Q700D9
Length = 255
Score = 125 (49.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 160 PKVAWTDSLHNRFLQAIRHIGLE-KAVPKKILEFMNVPGLTRENVASHLQKYR 211
P++ WT LH F+ A+ +G + KA PK +L+ M+V GLT +V SHLQ YR
Sbjct: 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 119 (46.9 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76
I+L++TD MP M G EL K+I E F +PV++MSS++ I + L G ++LKP
Sbjct: 81 INLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKP 140
Query: 77 LNPDDLKNV 85
+ D+K +
Sbjct: 141 VKLADVKRL 149
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 119 (46.9 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76
++L++TD MP M G EL K+I E F +PV++MSS++ I + L G ++LKP
Sbjct: 80 VNLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKP 139
Query: 77 LNPDDLKNV 85
+ D+K +
Sbjct: 140 VKLSDVKRL 148
>UNIPROTKB|Q48ND2 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_273089.1
ProteinModelPortal:Q48ND2 STRING:Q48ND2 GeneID:3556464
KEGG:psp:PSPPH_0807 PATRIC:19970685 OMA:KLANYKF
ProtClustDB:CLSK642719 Uniprot:Q48ND2
Length = 122
Score = 106 (42.4 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/74 (27%), Positives = 46/74 (62%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKAL 65
+AL + Q+ + L+++D++MP M+GI KE+ + + P+++++++ +ES +
Sbjct: 37 DALGKLTGQK-VHLIISDVNMPNMDGITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQ 95
Query: 66 ASGVAFYILKPLNP 79
A+G +++KP P
Sbjct: 96 AAGAKAWVVKPFQP 109
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 124 (48.7 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76
+DL++TD MP M G EL K+I E F +PV++MSS++ + I + L G ++LKP
Sbjct: 89 VDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKP 148
Query: 77 LNPDDLKNV 85
+ D+K +
Sbjct: 149 VKLADVKRL 157
>UNIPROTKB|Q4K714 [details] [associations]
symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
OMA:CVERATI ProtClustDB:CLSK937927
BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
Length = 465
Score = 128 (50.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVI 61
T + AL + Q DIDLV++D MP M+G +L EI + + LPV+VM++
Sbjct: 31 TAGNGLHALKVLE-QEDIDLVISDWRMPGMDGPQLLGEIKQRYPQLPVIVMTAYSTVKNA 89
Query: 62 MKALASGVAFYILKPLNPDDLKNVWQYAMTYK 93
++++ +G YI KP + D+L A+ ++
Sbjct: 90 VQSMRNGAYDYIAKPFDIDELDITVSKALQFR 121
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 105 (42.0 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 19/68 (27%), Positives = 43/68 (63%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D+V D+ MPEM+GI+ +EI + + +++ S+ +++++M+A+ +G +I+KP
Sbjct: 49 DVVTMDITMPEMDGIQAVREIKKIDPNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQQ 108
Query: 80 DDLKNVWQ 87
D + ++
Sbjct: 109 DRILQAFE 116
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 137 (53.3 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 30/95 (31%), Positives = 58/95 (61%)
Query: 15 IQRDIDLVVTDLHMPEMNGIELQ-KEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFY 72
+ ID+V+T++ MP ++GI L K +N + ++PV++MSS D ++ K L+ G +
Sbjct: 120 LNNHIDIVLTEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDF 179
Query: 73 ILKPLNPDDLKNVWQYAMTYKKAKSISIDEIGSFE 107
++KP+ ++LK +WQ+ ++ S S E G+ +
Sbjct: 180 LVKPIRKNELKILWQHVWRRCQSSSGSGSESGTHQ 214
Score = 38 (18.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 9/25 (36%), Positives = 9/25 (36%)
Query: 501 YGPGNNAQNDFTNFAPINNASVNGN 525
YG N N N A NGN
Sbjct: 621 YGSSNGMNAGGMNMGSDNGAGKNGN 645
>TAIR|locus:2041145 [details] [associations]
symbol:AT2G02060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000239342 EMBL:BT008556 EMBL:BT008699
EMBL:AK229511 IPI:IPI00542007 RefSeq:NP_565281.2 UniGene:At.41520
ProteinModelPortal:Q7X887 SMR:Q7X887 EnsemblPlants:AT2G02060.1
GeneID:814737 KEGG:ath:AT2G02060 TAIR:At2g02060 eggNOG:NOG268656
InParanoid:Q7X887 OMA:WREQEHE ProtClustDB:CLSN2681500
Genevestigator:Q7X887 Uniprot:Q7X887
Length = 256
Score = 123 (48.4 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 160 PKVAWTDSLHNRFLQAIRHIGLE-KAVPKKILEFMNVPGLTRENVASHLQKYR----IFL 214
P++ WT LH F+ A+ +G + +A PK +L+ M+V GLT +V SHLQ YR + L
Sbjct: 30 PRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRGGSKLTL 89
Query: 215 KRVAEQGASAM 225
++ E +S++
Sbjct: 90 EKPEESSSSSI 100
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 134 (52.2 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 27/97 (27%), Positives = 57/97 (58%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
DID+++ ++ +P G+++ + I +++ +PV++MS D V++K L G A Y++K
Sbjct: 64 DIDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVK 123
Query: 76 PLNPDDLKNVWQYAMTYKKAKSISIDEIGS--FELAG 110
PL ++L N+W + ++ ++ + S F+L G
Sbjct: 124 PLRTNELLNLWTHMWRRRRMLGLAEKNMLSYDFDLVG 160
Score = 39 (18.8 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 315 GNTRNPLYQANSA--GKTCGSSGSNATEANPLSRGGLAAGLMNQMYQQKSQLRP 366
GN P N + SG +A A P G+MNQ+ Q + + P
Sbjct: 415 GNMNIPQVAMNRSKDSSQVDGSGFSAPNAYPY----YMHGVMNQVMMQSAAMMP 464
>TIGR_CMR|GSU_1891 [details] [associations]
symbol:GSU_1891 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
Length = 379
Score = 126 (49.4 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
ID+V+TD++MPEM GIE+ + I + +PV++M+ SV ++A+ G +I+KP +
Sbjct: 51 IDIVITDINMPEMTGIEVLRAIRKSNPDVPVILMTGYAELSVAVEAIKQGAFDFIIKPYD 110
Query: 79 PDDLKNVWQYAMTYKKAKSI 98
P L + + + Y + I
Sbjct: 111 PLYLFHAVEKGINYYRLLKI 130
>UNIPROTKB|Q4GZL0 [details] [associations]
symbol:rr1 "Type A response regulator 1" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CM000129 EMBL:AJ938070 eggNOG:NOG76823
Uniprot:Q4GZL0
Length = 231
Score = 121 (47.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 16 QRDIDLVVTDLHMPEMNGIELQKEIN--EEFTHLPVMVMSSDDRESVIMKALASGVAFYI 73
++ ID+V+TD MPEM G EL K I +PV+VMSS++ I + + +G +I
Sbjct: 59 EQAIDMVLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFI 118
Query: 74 LKPLNPDDLKNV 85
+KPL D++ +
Sbjct: 119 VKPLQSKDVQRL 130
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 104 (41.7 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEIN--EEFTHLPVMVMSSDDRESVIMKAL 65
EALA + R D++++D++MP M G E K + ++ P+++++++ +
Sbjct: 42 EALAKAQKAR-FDVIISDVNMPVMTGFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGK 100
Query: 66 ASGVAFYILKPLNPDDLKNVWQ 87
A G +++KP NP+ L Q
Sbjct: 101 AVGATGWLVKPFNPETLLKTLQ 122
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 104 (41.7 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 21/61 (34%), Positives = 38/61 (62%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76
IDL++TD++MP M+G++L + + HLP+ +++++ +ALA G YI KP
Sbjct: 49 IDLILTDINMPVMDGLKLVSLVRSDPSHRHLPIAIITTEGAAEDRERALALGANAYITKP 108
Query: 77 L 77
+
Sbjct: 109 I 109
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 104 (41.7 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEIN--EEFTHLPVMVMSSDDRESVIMKAL 65
EALA + R D++++D++MP M G E K + ++ P+++++++ +
Sbjct: 42 EALAKAQKAR-FDVIISDVNMPVMTGFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGK 100
Query: 66 ASGVAFYILKPLNPDDLKNVWQ 87
A G +++KP NP+ L Q
Sbjct: 101 AVGATGWLVKPFNPETLLKTLQ 122
>TIGR_CMR|BA_1791 [details] [associations]
symbol:BA_1791 "DNA-binding response regulator, LuxR
family" species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR000792
InterPro:IPR001789 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196
PRINTS:PR00038 PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110
SMART:SM00421 SMART:SM00448 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0043565
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
SUPFAM:SSF46894 HOGENOM:HOG000034813 HSSP:P11470 RefSeq:NP_844216.1
RefSeq:YP_018429.1 RefSeq:YP_027925.1 ProteinModelPortal:Q81S79
DNASU:1086966 EnsemblBacteria:EBBACT00000009189
EnsemblBacteria:EBBACT00000015306 EnsemblBacteria:EBBACT00000019455
GeneID:1086966 GeneID:2815061 GeneID:2847826 KEGG:ban:BA_1791
KEGG:bar:GBAA_1791 KEGG:bat:BAS1659 OMA:ILTNMKI
ProtClustDB:CLSK916365 BioCyc:BANT260799:GJAJ-1730-MONOMER
BioCyc:BANT261594:GJ7F-1801-MONOMER Uniprot:Q81S79
Length = 212
Score = 119 (46.9 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVI 61
TV EA+ + + D+D+ + D+ MP MNG+E K I EE P+++ + DD E I
Sbjct: 33 TVNDGKEAVEYCK-KNDVDIALLDVRMPNMNGVEATKLICEETETKPLILTTFDDDE-YI 90
Query: 62 MKALASGVAFYILKPLNPDDLKN 84
+ A+ +G Y+LK +P+ +++
Sbjct: 91 LDAVKNGAKGYLLKNNDPERIRD 113
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 126 (49.4 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D+V+ D+ MPEM+GI+ KE+ T PV++M++ ++AL G Y++KP +
Sbjct: 50 DVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDL 109
Query: 80 DDLKNVWQYAMTYKKAK 96
D+L + Q A+ + K
Sbjct: 110 DELNLIVQRALQLQSMK 126
>TIGR_CMR|BA_1660 [details] [associations]
symbol:BA_1660 "chemotaxis response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
DNASU:1083740 EnsemblBacteria:EBBACT00000009828
EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
BioCyc:BANT260799:GJAJ-1613-MONOMER
BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
Length = 122
Score = 103 (41.3 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
VEA+ + + D+V D+ MPEM+G+E KEI + V++ S+ ++ +++ A+
Sbjct: 38 VEAIQKYK-ELQPDIVTLDITMPEMDGLEALKEIIKIDASAKVVICSAMGQQGMVLDAIK 96
Query: 67 SGVAFYILKPLNPD 80
G +I+KP D
Sbjct: 97 GGAKDFIVKPFQAD 110
>TIGR_CMR|DET_0177 [details] [associations]
symbol:DET_0177 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_180925.1 ProteinModelPortal:Q3ZA24 STRING:Q3ZA24
GeneID:3230544 KEGG:det:DET0177 PATRIC:21607433 OMA:CIIKNEA
ProtClustDB:CLSK837633 BioCyc:DETH243164:GJNF-177-MONOMER
Uniprot:Q3ZA24
Length = 226
Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 1 VTVTRP-VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRES 59
+TV R EA+ +V + DLV+ DL +P+MNG+++ EI+ T P++V+++ + E
Sbjct: 29 ITVCRTGYEAVESVNSDK-ADLVLLDLGLPDMNGLKVLDEIHP-ITGAPIIVVTACEDEE 86
Query: 60 VIMKALASGVAFYILKP 76
++KAL G YI KP
Sbjct: 87 NVLKALEQGADEYITKP 103
>TAIR|locus:2051572 [details] [associations]
symbol:AT2G06020 "AT2G06020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 EMBL:AC006413 IPI:IPI00525998 PIR:C84474
RefSeq:NP_178659.1 UniGene:At.52657 ProteinModelPortal:Q9ZPZ8
SMR:Q9ZPZ8 EnsemblPlants:AT2G06020.1 GeneID:815156
KEGG:ath:AT2G06020 TAIR:At2g06020 eggNOG:NOG275517
HOGENOM:HOG000154034 OMA:SKITPCI PhylomeDB:Q9ZPZ8
ProtClustDB:CLSN2912993 ArrayExpress:Q9ZPZ8 Genevestigator:Q9ZPZ8
Uniprot:Q9ZPZ8
Length = 301
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 155 TAPKKPKVAWTDSLHNRFLQAIRHIG-LEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212
T+ +K ++ W+ LH+ F+ A+ +G KA PK + E M V G+ +V SHLQK+R+
Sbjct: 82 TSDEKARLRWSSDLHDCFVNAVEKLGGPNKATPKSVKEAMEVEGIALHHVKSHLQKFRL 140
>TIGR_CMR|BA_4920 [details] [associations]
symbol:BA_4920 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_847118.1 RefSeq:YP_021563.2
ProteinModelPortal:Q81KS0 DNASU:1084104
EnsemblBacteria:EBBACT00000011298 EnsemblBacteria:EBBACT00000014550
GeneID:1084104 GeneID:2819868 KEGG:ban:BA_4920 KEGG:bar:GBAA_4920
PATRIC:18787418 OMA:FFVTHPN ProtClustDB:CLSK882384
BioCyc:BANT261594:GJ7F-4779-MONOMER Uniprot:Q81KS0
Length = 229
Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
V V E + +Q D DL++ D+ +P+MNG E+ K+I +P++++S+ +
Sbjct: 28 VDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFEICKQIRA-IKDIPILLVSAKKEDID 86
Query: 61 IMKALASGVAFYILKPLNPDDL 82
++ L G YI KP +P +L
Sbjct: 87 KIRGLGLGADDYITKPFSPSEL 108
>UNIPROTKB|Q1DF43 [details] [associations]
symbol:MXAN_0460 "Response regulator" species:246197
"Myxococcus xanthus DK 1622" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
RefSeq:YP_628730.1 ProteinModelPortal:Q1DF43 IntAct:Q1DF43
STRING:Q1DF43 GeneID:4103270 KEGG:mxa:MXAN_0460 PATRIC:22643509
HOGENOM:HOG000025389 OMA:NLELEGH ProtClustDB:CLSK955207
BioCyc:MXAN246197:GIWU-455-MONOMER Uniprot:Q1DF43
Length = 255
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 28/72 (38%), Positives = 47/72 (65%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
EAL + Q +D+V+TD+ MP ++G+EL + I +E +PV++M++ E ++ ALA
Sbjct: 44 EALRLLEKQ-SVDVVLTDIRMPGLHGVELLRRIKQERPDMPVVLMTAFTAEELVDDALAE 102
Query: 68 GVAFYIL-KPLN 78
G AF +L KP +
Sbjct: 103 G-AFTVLPKPFD 113
>TIGR_CMR|GSU_0149 [details] [associations]
symbol:GSU_0149 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 PROSITE:PS50109 HSSP:P06143 RefSeq:NP_951211.1
ProteinModelPortal:Q74GU5 GeneID:2687911 KEGG:gsu:GSU0149
PATRIC:22023046 HOGENOM:HOG000135524 OMA:ISHKFRT
ProtClustDB:CLSK827668 BioCyc:GSUL243231:GH27-183-MONOMER
Uniprot:Q74GU5
Length = 371
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
ID+++TD+ MP++NGIEL + + E L V+VM+ + +I+ AL + +I KPLN
Sbjct: 56 IDVILTDVMMPKLNGIELLRRLKEMEPTLVVIVMTGYAEKDIILNALKADADDFITKPLN 115
Query: 79 PDDLKNVWQYAMTYKKAK 96
LK A+ K K
Sbjct: 116 LLQLKTAVDRALDKKVLK 133
>TAIR|locus:2027237 [details] [associations]
symbol:ARR15 "response regulator 15" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
Length = 206
Score = 117 (46.2 bits), Expect = 0.00012, P = 0.00012
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76
++L+VTD MP + G EL K+I E +PV++MSS++ + I + + G ++LKP
Sbjct: 73 VNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKP 132
Query: 77 LNPDDLKNVWQYAM 90
+ D+K + + M
Sbjct: 133 VKLADVKRLKELIM 146
>UNIPROTKB|P14375 [details] [associations]
symbol:zraR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
Genevestigator:P14375 Uniprot:P14375
Length = 441
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
+AL VR ++ DLV+ D+ M EM+GI KEI +PV++M++ ++AL +
Sbjct: 40 QALEQVR-EQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKT 98
Query: 68 GVAFYILKPLNPDDLKNVWQYAMTY 92
G Y++KPL+ D+L+ + A+ +
Sbjct: 99 GALDYLIKPLDFDNLQATLEKALAH 123
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 8 EALATVRIQRD-IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
EA T + RD D+V+TDL +P+ +GI++ K++ E+ V++++ +KA+
Sbjct: 39 EAFQT--LTRDTFDIVITDLFLPDASGIDILKKVKEDAPLTEVILITGHASAETAVKAMK 96
Query: 67 SGVAFYILKPLNPDDLK 83
G YI KPLN D+LK
Sbjct: 97 EGAFDYITKPLNFDELK 113
>UNIPROTKB|Q1CXR3 [details] [associations]
symbol:difD "Fibril biogenesis regulator DifD"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_634810.1
ProteinModelPortal:Q1CXR3 SMR:Q1CXR3 IntAct:Q1CXR3 STRING:Q1CXR3
GeneID:4104566 KEGG:mxa:MXAN_6693 PATRIC:22655877 OMA:PFQAPKV
ProtClustDB:CLSK947176 BioCyc:MXAN246197:GIWU-6635-MONOMER
Uniprot:Q1CXR3
Length = 122
Score = 101 (40.6 bits), Expect = 0.00014, P = 0.00014
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
DL D+ MP +GIE +EI + + V++ S+ +ES++M+A+ +G + +I+KP
Sbjct: 49 DLTTMDIVMPFKSGIEATREIIKADSSAVVIMCSALGQESLVMEAIEAGASDFIVKPFRA 108
Query: 80 DDL 82
+D+
Sbjct: 109 EDV 111
>UNIPROTKB|Q7D1A8 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK881447 HSSP:P06143
RefSeq:NP_353545.1 ProteinModelPortal:Q7D1A8 STRING:Q7D1A8
GeneID:1132554 KEGG:atu:Atu0516 PATRIC:20810735 OMA:KNDRYRA
Uniprot:Q7D1A8
Length = 121
Score = 101 (40.6 bits), Expect = 0.00014, P = 0.00014
Identities = 21/78 (26%), Positives = 46/78 (58%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKA 64
+E L + Q + D++VTD++MP ++G + + NE++ +P++V++++ +A
Sbjct: 36 IEGLEVLE-QSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRA 94
Query: 65 LASGVAFYILKPLNPDDL 82
+G +I+KP +P L
Sbjct: 95 RQAGATGWIVKPFDPAKL 112
>TIGR_CMR|CBU_0760 [details] [associations]
symbol:CBU_0760 "response regulator protein, putative"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0016740 GO:GO:0005622
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 OMA:DMDMPIM
HSSP:Q9A5I4 RefSeq:NP_819784.1 ProteinModelPortal:Q83DH3
GeneID:1208651 KEGG:cbu:CBU_0760 PATRIC:17930215
ProtClustDB:CLSK914293 BioCyc:CBUR227377:GJ7S-758-MONOMER
Uniprot:Q83DH3
Length = 124
Score = 101 (40.6 bits), Expect = 0.00014, P = 0.00014
Identities = 22/87 (25%), Positives = 48/87 (55%)
Query: 3 VTRPVEALATVRIQRD-IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVI 61
VT ++ + + + D DL+ D+++ +MNG+E+ K I + + P++ ++S+ ++
Sbjct: 36 VTLAIDGQSALALYSDKFDLIFLDINLSDMNGMEVCKAIRQRTSSTPIIALTSESSKNK- 94
Query: 62 MKALASGVAFYILKPLNPDDLKNVWQY 88
+ ++G+ +I KP LK V Y
Sbjct: 95 PRYFSTGINDFIKKPTTQAALKRVLNY 121
>NCBI_NP|NP_353545.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] REFSEQ:NC_003062
Ncbi:NP_353545
Length = 121
Score = 101 (40.6 bits), Expect = 0.00014, P = 0.00014
Identities = 21/78 (26%), Positives = 46/78 (58%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKA 64
+E L + Q + D++VTD++MP ++G + + NE++ +P++V++++ +A
Sbjct: 36 IEGLEVLE-QSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRA 94
Query: 65 LASGVAFYILKPLNPDDL 82
+G +I+KP +P L
Sbjct: 95 RQAGATGWIVKPFDPAKL 112
>TIGR_CMR|GSU_0682 [details] [associations]
symbol:GSU_0682 "DNA-binding response regulator, LuxR
family" species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034813 HSSP:P10957 RefSeq:NP_951739.1
ProteinModelPortal:Q74FC7 GeneID:2685378 KEGG:gsu:GSU0682
PATRIC:22024119 OMA:HSIMKKL ProtClustDB:CLSK2306730
BioCyc:GSUL243231:GH27-710-MONOMER Uniprot:Q74FC7
Length = 215
Score = 117 (46.2 bits), Expect = 0.00014, P = 0.00014
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 8 EALATVRIQRDI--DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKAL 65
+ + + R + D+VV D+ MP MNGIE + I EF V+++S + +++ L
Sbjct: 35 DGATAIELTRQLRPDVVVMDITMPGMNGIEATRRIVAEFPRTRVLILSMESERRFVLEVL 94
Query: 66 ASGVAFYILKPLNPDDL 82
+G Y+LK + D+L
Sbjct: 95 KTGAHGYLLKDCSQDEL 111
>UNIPROTKB|P0AF28 [details] [associations]
symbol:narL "NarL" species:83333 "Escherichia coli K-12"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0042128 "nitrate assimilation"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA]
InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 GO:GO:0042128 eggNOG:COG2197
HOGENOM:HOG000034813 EMBL:X69189 EMBL:X13360 EMBL:M24910
EMBL:X14884 PIR:S09285 RefSeq:NP_415739.1 RefSeq:YP_489491.1
PDB:1A04 PDB:1JE8 PDB:1RNL PDB:1ZG1 PDB:1ZG5 PDBsum:1A04
PDBsum:1JE8 PDBsum:1RNL PDBsum:1ZG1 PDBsum:1ZG5
ProteinModelPortal:P0AF28 SMR:P0AF28 DIP:DIP-35941N IntAct:P0AF28
PRIDE:P0AF28 EnsemblBacteria:EBESCT00000003408
EnsemblBacteria:EBESCT00000014443 GeneID:12932638 GeneID:945795
KEGG:ecj:Y75_p1196 KEGG:eco:b1221 PATRIC:32117700 EchoBASE:EB0637
EcoGene:EG10643 KO:K07684 OMA:NHEDDVV ProtClustDB:PRK10651
BioCyc:EcoCyc:NARL-MONOMER BioCyc:ECOL316407:JW1212-MONOMER
EvolutionaryTrace:P0AF28 Genevestigator:P0AF28 Uniprot:P0AF28
Length = 216
Score = 117 (46.2 bits), Expect = 0.00015, P = 0.00015
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
D DL++ DL+MP MNG+E ++ E+ ++V S + E ++ AL G Y+LK +
Sbjct: 52 DPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDM 111
Query: 78 NPDDL 82
P+DL
Sbjct: 112 EPEDL 116
>TIGR_CMR|BA_2561 [details] [associations]
symbol:BA_2561 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:Q9WYN0 RefSeq:NP_844929.1
RefSeq:YP_019199.1 RefSeq:YP_028645.1 ProteinModelPortal:Q81Q72
DNASU:1085788 EnsemblBacteria:EBBACT00000009128
EnsemblBacteria:EBBACT00000014330 EnsemblBacteria:EBBACT00000023961
GeneID:1085788 GeneID:2819548 GeneID:2848970 KEGG:ban:BA_2561
KEGG:bar:GBAA_2561 KEGG:bat:BAS2385 OMA:LETVMNG
ProtClustDB:CLSK916690 BioCyc:BANT260799:GJAJ-2450-MONOMER
BioCyc:BANT261594:GJ7F-2538-MONOMER Uniprot:Q81Q72
Length = 231
Score = 117 (46.2 bits), Expect = 0.00018, P = 0.00018
Identities = 25/77 (32%), Positives = 50/77 (64%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSS--DDRESVIMKAL 65
EAL + ++DL++ D+ MP+ NG+E+ +E+ E T +P++++S+ +D + ++ L
Sbjct: 37 EALQMISTY-EVDLMILDIMMPKRNGLEVCQEVRENNT-VPILMLSAKAEDMDKIL--GL 92
Query: 66 ASGVAFYILKPLNPDDL 82
+G Y++KP NP +L
Sbjct: 93 MTGADDYMIKPFNPLEL 109
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76
++L++TD MP M G +L K+I E +PV++MSSD+ S I + L G + LKP
Sbjct: 69 VNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKP 128
Query: 77 LNPDDLKNV 85
+ D+ +
Sbjct: 129 VRLSDMSKL 137
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 117 (46.2 bits), Expect = 0.00019, P = 0.00019
Identities = 33/112 (29%), Positives = 56/112 (50%)
Query: 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
V +++ V + IDLV+ D+ MPE G EL I + + +M++S+
Sbjct: 30 VQAVNSIKSAIEVLEESRIDLVLLDIFMPEETGFELLMYIRNQEKEIDIMMISAVHDMGS 89
Query: 61 IMKALASGVAFYILKPLNPDDLKN---VWQYAMTY-KKAKSISIDEIGSFEL 108
I KAL GV Y++KP + K +++ +T+ K+ + IS E+ S L
Sbjct: 90 IKKALQYGVVDYLIKPFTFERFKEALTIYREKLTFMKEQQKISQSELDSLIL 141
>TIGR_CMR|CHY_1125 [details] [associations]
symbol:CHY_1125 "response regulator" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR005471 Pfam:PF00072 Pfam:PF09339
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
RefSeq:YP_359971.1 ProteinModelPortal:Q3AD13 STRING:Q3AD13
GeneID:3727659 KEGG:chy:CHY_1125 PATRIC:21275390
HOGENOM:HOG000131195 OMA:RNEYLWI ProtClustDB:CLSK289825
BioCyc:CHYD246194:GJCN-1124-MONOMER Uniprot:Q3AD13
Length = 205
Score = 115 (45.5 bits), Expect = 0.00021, P = 0.00021
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D+V+ D HMP ++G++ + I E +P++V++ D+R+ + K L G + + LKP+
Sbjct: 46 DMVLVDYHMPALDGLDTVERIREIDQGVPIIVLTVDERQQIADKFLEVGASDFALKPIKA 105
Query: 80 DDL 82
DL
Sbjct: 106 PDL 108
>UNIPROTKB|Q0PBM2 [details] [associations]
symbol:cheA "Chemotaxis histidine kinase" species:192222
"Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560 SUPFAM:SSF50341
EMBL:AL111168 GenomeReviews:AL111168_GR OMA:CDHGIED
ProtClustDB:CLSK872488 PIR:B81447 RefSeq:YP_002343725.1
ProteinModelPortal:Q0PBM2 IntAct:Q0PBM2 GeneID:904608
KEGG:cje:Cj0284c PATRIC:20057487 HOGENOM:HOG000255264
BioCyc:CJEJ192222:GJTS-263-MONOMER Uniprot:Q0PBM2
Length = 769
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 1 VTVTRPVEALATVRI-QRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDR 57
+ T VEAL ++ + DID ++ D+ MP M+G L EI + ++ +LP++ ++S
Sbjct: 674 IEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTS 733
Query: 58 ESVIMKALASGVAFYILKPLNPDDLKNV 85
++ ++ + G+ YI KP +P+ L+NV
Sbjct: 734 KTDRLRGVEVGMTEYITKPYSPEYLENV 761
>UNIPROTKB|Q5HWI3 [details] [associations]
symbol:cheA "Chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 1 VTVTRPVEALATVRI-QRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDR 57
+ T VEAL ++ + DID ++ D+ MP M+G L EI + ++ +LP++ ++S
Sbjct: 674 IEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTS 733
Query: 58 ESVIMKALASGVAFYILKPLNPDDLKNV 85
++ ++ + G+ YI KP +P+ L+NV
Sbjct: 734 KTDRLRGVEVGMTEYITKPYSPEYLENV 761
>TIGR_CMR|CJE_0332 [details] [associations]
symbol:CJE_0332 "chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 1 VTVTRPVEALATVRI-QRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDR 57
+ T VEAL ++ + DID ++ D+ MP M+G L EI + ++ +LP++ ++S
Sbjct: 674 IEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTS 733
Query: 58 ESVIMKALASGVAFYILKPLNPDDLKNV 85
++ ++ + G+ YI KP +P+ L+NV
Sbjct: 734 KTDRLRGVEVGMTEYITKPYSPEYLENV 761
>TIGR_CMR|GSU_0963 [details] [associations]
symbol:GSU_0963 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 HSSP:P06143 RefSeq:NP_952017.2 GeneID:2687572
KEGG:gsu:GSU0963 PATRIC:22024702 ProtClustDB:CLSK828118
BioCyc:GSUL243231:GH27-974-MONOMER Uniprot:Q74EJ9
Length = 464
Score = 122 (48.0 bits), Expect = 0.00022, P = 0.00022
Identities = 31/125 (24%), Positives = 62/125 (49%)
Query: 4 TRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMK 63
TR EA+ + D DLVV+D+ MP M+G+E+ + I + +PV+++++ ++
Sbjct: 35 TRSFEAVEEFKAG-DWDLVVSDIKMPGMDGLEVLQRIKAKDPLVPVIMITAYATVETSIQ 93
Query: 64 ALASGVAFYILKPLNPDDL----KNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLD 119
AL G + KP P++L KN ++ ++ + + + +G F L
Sbjct: 94 ALRRGAYDMVTKPFEPEELLYRVKNALKHTQLLEENRELREELVGKFRFDNIIGASTGLK 153
Query: 120 DIVSR 124
D++ +
Sbjct: 154 DVLDK 158
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 99 (39.9 bits), Expect = 0.00022, P = 0.00022
Identities = 20/64 (31%), Positives = 41/64 (64%)
Query: 22 VVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 54 VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTA 113
Query: 80 DDLK 83
L+
Sbjct: 114 ATLE 117
>TIGR_CMR|SO_0351 [details] [associations]
symbol:SO_0351 "DNA-binding response regulator, LuxR
family" species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR000792
InterPro:IPR001789 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196
PRINTS:PR00038 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034813 HSSP:P11470 KO:K07693 RefSeq:NP_715991.1
ProteinModelPortal:Q8EJV5 GeneID:1168228 KEGG:son:SO_0351
PATRIC:23520405 OMA:LRQVHRG ProtClustDB:CLSK905708 Uniprot:Q8EJV5
Length = 198
Score = 114 (45.2 bits), Expect = 0.00023, P = 0.00023
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
EAL ++ Q+ DL++TD+ MP G+EL + E+ + V+V+++ R I +A+ +
Sbjct: 36 EALTLLK-QQHFDLLLTDIEMPGRTGLELAAWLKEQHSQTKVVVITTFGRAGYIKRAIEA 94
Query: 68 GVAFYILKPLNPDDLKNVWQYAMTYKK 94
GV ++LK + L + Q M K+
Sbjct: 95 GVGGFLLKDAPSETLVSSIQQVMAGKR 121
>UNIPROTKB|Q3JZR1 [details] [associations]
symbol:csrR "DNA-binding response regulator CsrR"
species:205921 "Streptococcus agalactiae A909" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
EMBL:CP000114 RefSeq:YP_330242.1 ProteinModelPortal:Q3JZR1
EnsemblBacteria:EBSTRT00000004344 GeneID:3685998
GenomeReviews:CP000114_GR KEGG:sak:SAK_1639 PATRIC:19634591
OMA:LASVWRY ProtClustDB:CLSK634230
BioCyc:SAGA205921:GHD7-1647-MONOMER Uniprot:Q3JZR1
Length = 229
Score = 114 (45.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
V T E L T +++D DL++ DL +PEM+G E+ + + E T +M+M++ D
Sbjct: 30 VVETNGREGLDTA-LEKDFDLILLDLMLPEMDGFEITRRLQAEKTTY-IMMMTARDSVMD 87
Query: 61 IMKALASGVAFYILKPLNPDDL 82
I+ L G YI+KP ++L
Sbjct: 88 IVAGLDRGADDYIVKPFAIEEL 109
Score = 38 (18.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 169 HNRFLQAIRHIGLEK-AVPKKILEFMNV------PGLTRENVASHLQKYRI 212
HNR A+R G E+ ++ K+ + +NV +TRE + H+ KY +
Sbjct: 143 HNR--SAMR--GDEEISLTKREFDLLNVLMTNMNRVMTREELLEHVWKYDV 189
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 115 (45.5 bits), Expect = 0.00032, P = 0.00032
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
D++L++TD MP M G +L K + + +PV++MSS++ + I + L G + LK
Sbjct: 73 DVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLK 132
Query: 76 PLNPDDLKNVWQYAMTYKK 94
P+ D+K + + + K+
Sbjct: 133 PVKLADMKKLKSHLLKRKQ 151
>TIGR_CMR|GSU_1658 [details] [associations]
symbol:GSU_1658 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K02488 HSSP:P06143 RefSeq:NP_952709.1
ProteinModelPortal:Q74CL4 GeneID:2685291 KEGG:gsu:GSU1658
PATRIC:22026165 HOGENOM:HOG000131459 OMA:NINFLEE
ProtClustDB:CLSK924527 BioCyc:GSUL243231:GH27-1650-MONOMER
Uniprot:Q74CL4
Length = 458
Score = 120 (47.3 bits), Expect = 0.00036, P = 0.00036
Identities = 32/99 (32%), Positives = 57/99 (57%)
Query: 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSD-DRESV 60
TV E L + Q + LV+TDL MP M+GIE+ + ++ ++ V++++ + ES
Sbjct: 30 TVASGTEGLKRLEKQ-EYHLVITDLVMPGMSGIEVLSRVKQKAPNVDVILVTGHANLESA 88
Query: 61 IMKALASGVAFYILKPLNPDDLKNVWQYAMTYKKAKSIS 99
+ AL +G YILKP N D+ K+ A+ +++ + I+
Sbjct: 89 VY-ALKNGARDYILKPFNHDEFKHT--VALCFEQRRLIN 124
>UNIPROTKB|P30855 [details] [associations]
symbol:evgS "EvgS sensory histidine kinase" species:83333
"Escherichia coli K-12" [GO:0030288 "outer membrane-bounded
periplasmic space" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005215 "transporter activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0023014 "signal transduction by
phosphorylation" evidence=IEA;RCA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0046777 "protein autophosphorylation"
evidence=IDA] [GO:0009927 "histidine phosphotransfer kinase
activity" evidence=IMP] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA;RCA] [GO:0016020
"membrane" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA;RCA;IDA] InterPro:IPR001638 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00497
Pfam:PF00512 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50894 SMART:SM00062 SMART:SM00073
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0005215 GO:GO:0030288
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 GO:GO:0009927 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 BRENDA:2.7.13.3 EMBL:D14008
EMBL:AF201840 EMBL:AF201841 PIR:G65010 RefSeq:NP_416871.1
RefSeq:YP_490612.1 ProteinModelPortal:P30855 SMR:P30855
DIP:DIP-9545N IntAct:P30855 MINT:MINT-1288120 PRIDE:P30855
EnsemblBacteria:EBESCT00000000392 EnsemblBacteria:EBESCT00000000393
EnsemblBacteria:EBESCT00000017143 GeneID:12931565 GeneID:946844
KEGG:ecj:Y75_p2337 KEGG:eco:b2370 PATRIC:32120119 EchoBASE:EB1567
EcoGene:EG11610 HOGENOM:HOG000122879 KO:K07679 OMA:SFAEAFI
ProtClustDB:PRK09959 BioCyc:EcoCyc:EVGS-MONOMER
BioCyc:ECOL316407:JW2367-MONOMER Genevestigator:P30855
Uniprot:P30855
Length = 1197
Score = 125 (49.1 bits), Expect = 0.00036, P = 0.00036
Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 4 TRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMK 63
T V+AL V +Q DL++TD++MP M+G EL +++ E+ + LP+ ++++ + + K
Sbjct: 989 TDGVQALHKVSMQH-YDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREK 1047
Query: 64 ALASGVAFYILKPLNPDDLK 83
L+ G+ + KPL D LK
Sbjct: 1048 GLSCGMNLCLFKPLTLDVLK 1067
>TIGR_CMR|DET_0300 [details] [associations]
symbol:DET_0300 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_181048.1
ProteinModelPortal:Q3Z9Q1 STRING:Q3Z9Q1 GeneID:3230339
KEGG:det:DET0300 PATRIC:21607673 OMA:GIKYGHW ProtClustDB:CLSK837537
BioCyc:DETH243164:GJNF-300-MONOMER Uniprot:Q3Z9Q1
Length = 225
Score = 114 (45.2 bits), Expect = 0.00038, P = 0.00038
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
D D+ + DL +P+++GI + K+I F+ LP++++++ + E I A G YI KP
Sbjct: 46 DFDIAIIDLGLPDIDGINVLKQIRA-FSSLPILILTARNNEQEIFTAFELGADDYITKPF 104
Query: 78 NPDDL 82
P +L
Sbjct: 105 QPLEL 109
>UNIPROTKB|Q9KT55 [details] [associations]
symbol:VC_1050 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM
HSSP:Q56312 PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 118 (46.6 bits), Expect = 0.00042, P = 0.00042
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
++ L +R + DL++ DL MP +NGIE +E++ + LP++V+S+ + + + KAL
Sbjct: 58 LDGLRKLR-DHEPDLILCDLSMPVLNGIEFVEEVSSSYPSLPLVVVSATEEMADVAKALR 116
Query: 67 SGVAFYILKPL 77
G+ ++ KP+
Sbjct: 117 FGIKDFLPKPI 127
>TIGR_CMR|VC_1050 [details] [associations]
symbol:VC_1050 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM HSSP:Q56312
PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 118 (46.6 bits), Expect = 0.00042, P = 0.00042
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
++ L +R + DL++ DL MP +NGIE +E++ + LP++V+S+ + + + KAL
Sbjct: 58 LDGLRKLR-DHEPDLILCDLSMPVLNGIEFVEEVSSSYPSLPLVVVSATEEMADVAKALR 116
Query: 67 SGVAFYILKPL 77
G+ ++ KP+
Sbjct: 117 FGIKDFLPKPI 127
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 96 (38.9 bits), Expect = 0.00047, P = 0.00047
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEIN--EEFTHLPVMVMSSDDRESVIMKAL 65
EAL QR D ++TD +MP M+G+ L K + F P+++++++ + + +
Sbjct: 37 EALDLCSSQR-FDFILTDQNMPRMDGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGK 95
Query: 66 ASGVAFYILKPLNPDDL 82
A G +++KP +P L
Sbjct: 96 AVGATGWMVKPFDPQKL 112
>TIGR_CMR|BA_5581 [details] [associations]
symbol:BA_5581 "stage 0 sporulation protein F"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
DNASU:1085276 EnsemblBacteria:EBBACT00000010293
EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
BioCyc:BANT260799:GJAJ-5260-MONOMER
BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
Length = 122
Score = 96 (38.9 bits), Expect = 0.00047, P = 0.00047
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
+AL V+ + + DLVV D+ +P M+GIE+ K + E + V++M++ +I +A
Sbjct: 37 QALDIVK-KDNPDLVVLDMKIPGMDGIEILKHVKEIDESIKVILMTAYGELDMIQEAKDL 95
Query: 68 GVAFYILKPLNPDDLK 83
G + KP + D+++
Sbjct: 96 GALMHFAKPFDIDEIR 111
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 96 (38.9 bits), Expect = 0.00047, P = 0.00047
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEIN--EEFTHLPVMVMSSDDRESVIMKAL 65
EAL QR D ++TD +MP M+G+ L K + F P+++++++ + + +
Sbjct: 37 EALDLCSSQR-FDFILTDQNMPRMDGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGK 95
Query: 66 ASGVAFYILKPLNPDDL 82
A G +++KP +P L
Sbjct: 96 AVGATGWMVKPFDPQKL 112
>TIGR_CMR|GSU_0280 [details] [associations]
symbol:GSU_0280 "transcriptional regulator, Fis family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
RefSeq:NP_951341.1 ProteinModelPortal:Q74GG5 GeneID:2687472
KEGG:gsu:GSU0280 PATRIC:22023302 OMA:ISTFETR
BioCyc:GSUL243231:GH27-330-MONOMER Uniprot:Q74GG5
Length = 450
Score = 118 (46.6 bits), Expect = 0.00058, P = 0.00058
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
EA+ +R + D+VV+D+ MP M+G+ L + E LPV++ ++ ++KA+
Sbjct: 41 EAMRMIRAECP-DVVVSDIRMPAMDGLTLASLLKTELPDLPVVLCTALHETDHLLKAIEL 99
Query: 68 GVAFYILKPLNPDDLKNVWQYA 89
GVA Y+ KP++ + L++ + A
Sbjct: 100 GVAAYVSKPIDLEKLQHAIRLA 121
>TIGR_CMR|CHY_0658 [details] [associations]
symbol:CHY_0658 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR007492 Pfam:PF00072
Pfam:PF04397 PROSITE:PS50110 PROSITE:PS50930 SMART:SM00448
SMART:SM00850 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3279
HOGENOM:HOG000242207 KO:K07705 RefSeq:YP_359513.1
ProteinModelPortal:Q3AEC1 STRING:Q3AEC1 GeneID:3727312
KEGG:chy:CHY_0658 PATRIC:21274453 OMA:DEYPARQ
ProtClustDB:CLSK831722 BioCyc:CHYD246194:GJCN-658-MONOMER
Uniprot:Q3AEC1
Length = 251
Score = 113 (44.8 bits), Expect = 0.00067, P = 0.00067
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
EALA +R D L+ D+ MP ++G+EL KEIN H P +V + E + KA
Sbjct: 39 EALALIRAV-DYSLLFLDIEMPGLSGLELAKEINA-LPHPPYVVFVTAYDEYAL-KAFEV 95
Query: 68 GVAFYILKPLNPDDLK 83
Y+LKP+ P LK
Sbjct: 96 NAVDYLLKPIEPKRLK 111
>TIGR_CMR|BA_0271 [details] [associations]
symbol:BA_0271 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
ProteinModelPortal:Q81VD8 DNASU:1085970
EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
OMA:EAKEMPI ProtClustDB:CLSK915759
BioCyc:BANT260799:GJAJ-293-MONOMER
BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
Length = 233
Score = 111 (44.1 bits), Expect = 0.00093, P = 0.00093
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 16 QRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
+ ++ LVV D+ MP+++GI + +I EE +P++++S+ ++ + L +G Y+ K
Sbjct: 45 ENEVHLVVLDIMMPKVDGIHMCMKIREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTK 103
Query: 76 PLNPDDL-KNVWQYAMTYKKAKSISIDEIGSFEL 108
P NP +L + Y K +I E+
Sbjct: 104 PFNPLELIARIKSQLRRYMKMNGFAIQNEDELEI 137
>TIGR_CMR|SPO_1679 [details] [associations]
symbol:SPO_1679 "DNA-binding response regulator CtrA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
Uniprot:Q5LST7
Length = 238
Score = 111 (44.1 bits), Expect = 0.00099, P = 0.00099
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSS-DDRESVIMKALASGVAFYILKP 76
D DL++ D+++P+MNG E+ +++ P++++S DD ES I K G Y+ KP
Sbjct: 44 DYDLILLDINLPDMNGHEVLRQLRMSRIETPILILSGVDDTESKI-KGFGFGADDYLTKP 102
Query: 77 LNPDDL 82
+ ++L
Sbjct: 103 FHREEL 108
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 93 (37.8 bits), Expect = 0.00099, P = 0.00099
Identities = 16/66 (24%), Positives = 39/66 (59%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76
I+L+++D++MP M+GI KE+ + + PV++++++ + + +G +++KP
Sbjct: 46 INLIISDVNMPNMDGISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
Query: 77 LNPDDL 82
P +
Sbjct: 106 FQPPQM 111
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 93 (37.8 bits), Expect = 0.00099, P = 0.00099
Identities = 16/66 (24%), Positives = 39/66 (59%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76
I+L+++D++MP M+GI KE+ + + PV++++++ + + +G +++KP
Sbjct: 46 INLIISDVNMPNMDGISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
Query: 77 LNPDDL 82
P +
Sbjct: 106 FQPPQM 111
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.362 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 534 449 0.00092 118 3 11 23 0.44 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 151
No. of states in DFA: 601 (64 KB)
Total size of DFA: 239 KB (2130 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.76u 0.09s 33.85t Elapsed: 00:00:01
Total cpu time: 33.77u 0.09s 33.86t Elapsed: 00:00:01
Start: Fri May 10 04:55:16 2013 End: Fri May 10 04:55:17 2013
WARNINGS ISSUED: 1