BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043479
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 98.6 bits (244), Expect = 7e-21, Method: Composition-based stats.
Identities = 43/64 (67%), Positives = 54/64 (84%)
Query: 155 TAPKKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFL 214
TA KKP+V WT LHN+FL A+ H+G+E+AVPKKIL+ MNV LTRENVASHLQK+R+ L
Sbjct: 1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60
Query: 215 KRVA 218
K+V+
Sbjct: 61 KKVS 64
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
D D VVTD +MP M GI+L K I +EE HLPV++++++ + I++A +GV YI+K
Sbjct: 57 DFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVK 116
Query: 76 PLNPDDLK 83
P LK
Sbjct: 117 PFTAATLK 124
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKA 64
VEA + D +++TD +MPEMNG++L K++ + F +P+++++++ ++ ++ A
Sbjct: 40 VEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITA 99
Query: 65 LASGVAFYILKPLNPDDLK 83
L +GV YI+KP P LK
Sbjct: 100 LKAGVNNYIVKPFTPQVLK 118
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKA 64
VEA + D +++TD +MPEMNG++L K++ + F +P+++++++ ++ ++ A
Sbjct: 40 VEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITA 99
Query: 65 LASGVAFYILKPLNPDDLK 83
L +GV YI+KP P LK
Sbjct: 100 LKAGVNNYIVKPFTPQVLK 118
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKA 64
VEA + D +++T +MPEMNG++L K++ + F +P+++++++ ++ ++ A
Sbjct: 40 VEAWEKLDANADTKVLITAWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITA 99
Query: 65 LASGVAFYILKPLNPDDLK 83
L +GV YI+KP P LK
Sbjct: 100 LKAGVNNYIVKPFTPQVLK 118
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
DLV+ DL P+++G+EL + I + + P++V+S S ++AL G A Y++KPL
Sbjct: 51 DLVICDLRXPQIDGLELIRRIRQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKPLE 109
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
DL++ D+ MP MNG++L + I PV+V+S+ + + I KAL GV +LKP+
Sbjct: 53 DLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 40/60 (66%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D+V D+ MPEMNGI+ KEI + + ++V S+ +++++++A+ +G +I+KP P
Sbjct: 48 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQP 107
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 40/60 (66%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D+V D+ MPEMNGI+ KEI + + ++V S+ +++++++A+ +G +I+KP P
Sbjct: 49 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQP 108
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
DLV+ DL P+++G+EL + I + + P++V+S S ++AL G A Y++KPL
Sbjct: 51 DLVICDLRXPQIDGLELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLE 109
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
+T + EAL ++ DL+V D+ +P+++GIE+ K++ ++ P++++++ D E
Sbjct: 31 ITASDGEEALKKAETEKP-DLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFD 89
Query: 61 IMKALASGVAFYILKPLNPDDL 82
+ L G Y+ KP +P ++
Sbjct: 90 KVLGLELGADDYMTKPFSPREV 111
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSD-DRESVIMKALASGVAFYILKPL 77
ID+V+TD+ MP+++G+++ +EI + H+ V++++ D ++ I+ A+ G Y+ KP+
Sbjct: 50 IDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAIL-AMKEGAFEYLRKPV 108
Query: 78 NPDDLKNVWQYAMTYKK 94
DL A+ KK
Sbjct: 109 TAQDLSIAINNAINRKK 125
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLP-VMVMSSDDRESVIMKALASGVAFYILKPLN 78
D+++ D+ MP ++G+ + + I F H P V+++++ +E V KA+ G +++ILKP +
Sbjct: 50 DILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFD 109
Query: 79 PDDL 82
++L
Sbjct: 110 MENL 113
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 79 PDDLK 83
P L+
Sbjct: 112 PATLE 116
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 16 QRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
+ DI+LV+ D+++P NG+ L +E+ E+ ++ +M ++ D E + L G YI K
Sbjct: 45 EYDINLVIMDINLPGKNGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITK 103
Query: 76 PLNPDDL 82
P NP +L
Sbjct: 104 PFNPREL 110
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 79 PDDLK 83
P L+
Sbjct: 113 PATLE 117
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 42/73 (57%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D++++D+ MP M+G+ L K+I + LPV++M++ + A G Y+ KP +
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 80 DDLKNVWQYAMTY 92
D+ + + A+++
Sbjct: 109 DEAVALVERAISH 121
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 42/73 (57%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D++++D+ MP M+G+ L K+I + LPV++M++ + A G Y+ KP +
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 80 DDLKNVWQYAMTY 92
D+ + + A+++
Sbjct: 109 DEAVALVERAISH 121
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 42/73 (57%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D++++D+ MP M+G+ L K+I + LPV++M++ + A G Y+ KP +
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 80 DDLKNVWQYAMTY 92
D+ + + A+++
Sbjct: 109 DEAVALVERAISH 121
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 17 RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76
R DL++ DL +P+ +GIE +++ +++ +PV+V+S+ ES + AL +G Y+ KP
Sbjct: 44 RKPDLIILDLGLPDGDGIEFIRDL-RQWSAVPVIVLSARSEESDKIAALDAGADDYLSKP 102
Query: 77 LNPDDLK 83
+L+
Sbjct: 103 FGIGELQ 109
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
+AL VR R DLV+ DL +P MNGI++ + + + + +P++++++ ++ L S
Sbjct: 40 QALTAVRELRP-DLVLLDLMLPGMNGIDVCRVLRAD-SGVPIVMLTAKTDTVDVVLGLES 97
Query: 68 GVAFYILKPLNPDD 81
G YI+KP P +
Sbjct: 98 GADDYIMKPFKPKE 111
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D +MP M+G+EL K I + + LPV++++S+ ++ I+ A +G + Y++KP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKPF 111
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 16 QRDIDLVVTDLHMPEMNGIELQKEIN----EEFTHLPVMVMSSDDRESVIMKALASGVAF 71
+ D D V+ DLHMP MNG+++ K++ + PV+V+S+D I +G
Sbjct: 56 EEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARA 115
Query: 72 YILKPL 77
++ KP+
Sbjct: 116 FLAKPV 121
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 53 FVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 79 PDDLK 83
L+
Sbjct: 113 AATLE 117
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 79 PDDLK 83
L+
Sbjct: 113 AATLE 117
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 16 QRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
+ DI+LV+ D+++P NG+ L +E+ E+ ++ + ++ D E + L G YI K
Sbjct: 45 EYDINLVIXDINLPGKNGLLLARELREQ-ANVALXFLTGRDNEVDKILGLEIGADDYITK 103
Query: 76 PLNPDDL 82
P NP +L
Sbjct: 104 PFNPREL 110
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
DL++ DL +P+ +G ++ + + + + LP++V+++ D ++ L G Y++KP +P
Sbjct: 83 DLILLDLGLPDFDGGDVVQRLRKN-SALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHP 141
Query: 80 DDLKNVWQYAMTYKKAKSIS 99
D+L + + + ++S+S
Sbjct: 142 DELLARVKVQLRQRTSESLS 161
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 49 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 108
Query: 79 PDDLK 83
L+
Sbjct: 109 AATLE 113
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLP-VMVMSSDDRESVIMKALASGVAFYILKPLN 78
D+++ + MP ++G+ + + I F H P V+++++ +E V KA+ G +++ILKP +
Sbjct: 50 DILLLXIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFD 109
Query: 79 PDDL 82
++L
Sbjct: 110 MENL 113
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 54 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 113
Query: 79 PDDLK 83
L+
Sbjct: 114 AATLE 118
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 54 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 112
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 51 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 110
Query: 79 PDDLK 83
L+
Sbjct: 111 AATLE 115
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKPF 111
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
++ D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 52 FIICDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV++++ + ++ I+ A +G + Y++KP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKPFT 112
Query: 79 PDDLK 83
L+
Sbjct: 113 AATLE 117
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 61/109 (55%), Gaps = 17/109 (15%)
Query: 17 RDI-DLVVTDLHMPEMNGIELQKEINEEFT--HLPVMVMSSDDRESVIMKALASGVAFYI 73
RD+ D+++ D+ MP M+G + +++ ++ T H+PV+++++ D ++ L SG + ++
Sbjct: 43 RDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFL 102
Query: 74 LKPLNPDDLKNVWQYAMTYKKAKSIS-----IDEIGSFELAGFSAGKFS 117
KP+ DD+ M + + +S++ IDE+ E +G G +
Sbjct: 103 TKPI--DDV-------MLFARVRSLTRFKLVIDELRQREASGRRMGVIA 142
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 19 IDLVVTDLHMPEMNGIELQKEI-NEEFT-HLPVMVMSSDDRESVIMKALASGVAFYILKP 76
+DLV+ + +G+ + +EE T LPV+ M D ++KAL GV + +P
Sbjct: 195 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 254
Query: 77 LNPDDLKNVWQYAMTYKK 94
++P +L + + K+
Sbjct: 255 IDPQELSARVKTQIQRKR 272
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 61/109 (55%), Gaps = 17/109 (15%)
Query: 17 RDI-DLVVTDLHMPEMNGIELQKEINEEFT--HLPVMVMSSDDRESVIMKALASGVAFYI 73
RD+ D+++ D+ MP M+G + +++ ++ T H+PV+++++ D ++ L SG + ++
Sbjct: 44 RDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFL 103
Query: 74 LKPLNPDDLKNVWQYAMTYKKAKSIS-----IDEIGSFELAGFSAGKFS 117
KP+ DD+ M + + +S++ IDE+ E +G G +
Sbjct: 104 TKPI--DDV-------MLFARVRSLTRFKLVIDELRQREASGRRMGVIA 143
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 19 IDLVVTDLHMPEMNGIELQKEI-NEEFT-HLPVMVMSSDDRESVIMKALASGVAFYILKP 76
+DLV+ + +G+ + +EE T LPV+ M D ++KAL GV + +P
Sbjct: 196 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 255
Query: 77 LNPDDL 82
++P +L
Sbjct: 256 IDPQEL 261
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D MP M+G+EL K I + + LPV+++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV++ +++ ++ I+ A +G + Y++KP
Sbjct: 49 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFT 108
Query: 79 PDDLK 83
L+
Sbjct: 109 AATLE 113
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D +MP M+G+EL K I + + LPV++++++ ++ ++ A +G + Y++KP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPF 110
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFT--HLPVMVMSSDDRESVIMKAL 65
EALAT+ I LV+ D + PE++GI L + + E ++ L ++ +S D+ + + L
Sbjct: 159 EALATLEQHPAIRLVLVDYYXPEIDGISLVRXLRERYSKQQLAIIGISVSDKRGLSARYL 218
Query: 66 ASGVAFYILKPLNPDDLK 83
G ++ +P P++L+
Sbjct: 219 KQGANDFLNQPFEPEELQ 236
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
+++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 52 FIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV+++ ++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
VT EAL ++ D+++ DL +PE++G+E+ K I + + +P++++S+ D E
Sbjct: 29 VTAFNGREALEQFEAEQP-DIIILDLMLPEIDGLEVAKTIRKT-SSVPILMLSAKDSEFD 86
Query: 61 IMKALASGVAFYILKPLNPDDLK 83
+ L G Y+ KP + +L+
Sbjct: 87 KVIGLELGADDYVTKPFSNRELQ 109
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
+++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 53 FIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 41/73 (56%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D++++ + MP M+G+ L K+I + LPV++M++ + A G Y+ KP +
Sbjct: 49 DVLLSXIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 80 DDLKNVWQYAMTY 92
D+ + + A+++
Sbjct: 109 DEAVALVERAISH 121
>pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
pdb|3HV2|B Chain B, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
Length = 153
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 4 TRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMK 63
T+ ++ LA+ R++DLV++ H+P+M+G L I++++ ++++ D +I K
Sbjct: 48 TQALQLLAS----REVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAK 103
Query: 64 ALASGVAF-YILKPLNPDDLKNVWQYAMTYKKAK 96
A+ G + Y+ KP + +L + A+ ++ ++
Sbjct: 104 AINEGEIYRYLSKPWDDQELLLALRQALEHQHSE 137
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + +++KP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
V+VT L + + +DL++ D+++P+ NG+ L + + E T ++V DR
Sbjct: 29 VSVTASGAGLREIXQNQSVDLILLDINLPDENGLXLTRALRERSTVGIILVTGRSDRIDR 88
Query: 61 IMKALASGVAFYILKPLNPDDL 82
I+ L G Y+ KPL +L
Sbjct: 89 IV-GLEXGADDYVTKPLELREL 109
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D +MP M+G+EL K I + + LPV+++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPF 110
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D+V D+ MPEMNGI+ KEI + + ++V S+ +++++++A+ +G +I+
Sbjct: 27 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKGFIVNTAAV 86
Query: 80 DDLKNVWQYAMTY-KKAKSISID 101
++ + Q A T+ +A ++ID
Sbjct: 87 ENPSLITQLAQTFGSQAVVVAID 109
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D MP M+G+EL K I + + LPV+++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D MP M+G+EL K I + + LPV+++++ ++ I+ A +G + Y++KP
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPF 114
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D +MP M+G+EL K I + + LPV++++ + ++ I+ A +G + Y++KP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKPF 111
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D MP M+G+EL K I + + LPV+++++ ++ I+ A +G + Y++KP
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPF 114
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D MP M+G+EL K I + + LPV+++++ ++ I+ A +G + Y++KP
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPF 114
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D+V D+ MPEMNGI+ KEI + + ++V S+ +++++++A+ +G +I+
Sbjct: 27 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAV 86
Query: 80 DDLKNVWQYAMTY-KKAKSISID 101
++ + Q A T+ +A ++ID
Sbjct: 87 ENPSLITQIAQTFGSQAVVVAID 109
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D MP M+G+EL K I + + LPV+++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D MP M+G+EL K I + + LPV+++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPF 110
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 17/92 (18%)
Query: 3 VTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEI-NEEFTH----LPVMVMSS--- 54
VT ++AL + R D+++ D+ MP M+G+E EI N E TH ++ +++
Sbjct: 40 VTNGLQALQAYQ-NRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTI 98
Query: 55 -DDRESVIMKALASGVAFYILKPLNPDDLKNV 85
DDR + Y+ KPLNP+ L++V
Sbjct: 99 DDDRPGAELDE-------YVSKPLNPNQLRDV 123
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D +MP M+G+EL K I + + LPV+++ ++ ++ I+ A +G + +++KP
Sbjct: 52 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 21 LVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
++VTDL MP+M+G+EL + + + ++P +V++ + ++A+ +G +I KP
Sbjct: 50 VLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPF 106
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
V++D MP M+G+EL K I + + LPV+++++ ++ I+ A +G + Y++KP
Sbjct: 56 FVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPF 114
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVI 61
T V+AL V + ID+V++D++MP M+G L + I + LPV+ ++++
Sbjct: 37 TANDGVDAL-NVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEK 95
Query: 62 MKALASGVAFYILKPLNPDDLKNVWQ-YAMTYKKAK 96
+ L SG+ + KP+ D +K YA +K++
Sbjct: 96 QRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRKSR 131
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 20 DLVVTDLHMPEMNGIELQKEIN--EEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
DL+V D+ MP M+G + K++ EE+ +PV+V+++ E AL+ G + KP
Sbjct: 48 DLIVLDIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPF 107
Query: 78 NP 79
+P
Sbjct: 108 SP 109
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
LV+ DL++P+ GI++ K + E PV+++++ D + I + G YI KP+N
Sbjct: 62 LVLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVN 121
Query: 79 PDDLKN 84
++ N
Sbjct: 122 YENFAN 127
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
+T T P++AL ++ + LV++D+ MPEM G +++ + + + +V+S
Sbjct: 35 ITFTSPLDALEALK-GTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQA 93
Query: 61 IMKALASG-VAFYILKPLNPDDLKNV 85
+ A+ G ++ ++LKP +D+ V
Sbjct: 94 TIDAVNRGKISRFLLKPWEDEDVFKV 119
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++ +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 8 EALATVRIQRD--IDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMK 63
E L+ + I R+ DL++ D+ +PE++G+E+ K + E + H+PV+ +++ + +
Sbjct: 33 EGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEER 92
Query: 64 ALASGVAFYILKPLN 78
G YI KP++
Sbjct: 93 IREGGCEAYISKPIS 107
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 39/63 (61%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
++V+ D+ MP M G+E+ EI ++ ++ V+++++ R KA+ + V Y+LK +
Sbjct: 51 NVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSI 110
Query: 80 DDL 82
++L
Sbjct: 111 EEL 113
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++ +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 53 FVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 112
Query: 79 PDDLK 83
L+
Sbjct: 113 AATLE 117
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 21 LVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
+++ DL++P +G E+ +EI +E +PV++M++ I + ++ YI+KPL
Sbjct: 65 VILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE 124
Query: 79 PDDLKNVWQYAMTY 92
D L Q + Y
Sbjct: 125 IDRLTETVQTFIKY 138
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 42/61 (68%), Gaps = 6/61 (9%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSD-DRESVIMKALA-SGVAFYILKP 76
V++D +MP M+G+EL K I + + LPV++++++ D E++ KALA +G + Y++KP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEADAENI--KALAQAGASGYVVKP 110
Query: 77 L 77
Sbjct: 111 F 111
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++ +MP M+G+EL K I + + LPV++++++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|3C3W|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Hypoxic Response Regulator Dosr
pdb|3C3W|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Hypoxic Response Regulator Dosr
Length = 225
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
EA+A V R D+ V D+ +P+ NGIEL +++ L ++++S + ++ A+ +
Sbjct: 38 EAMARVPAARP-DVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILA 96
Query: 68 GVAFYILKPLN 78
G + Y++K +
Sbjct: 97 GASGYVVKDIK 107
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 19 IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
ID+V++D++MP M+G L + I + LPV+ ++++ + L SG+ + KP+
Sbjct: 174 IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVT 233
Query: 79 PDDLKNVWQ-YAMTYKKAK 96
D +K YA +K++
Sbjct: 234 LDVIKQTLTLYAERVRKSR 252
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++ +MP M+G+EL K I + + LPV+++ ++ ++ I+ A +G + Y++KP
Sbjct: 52 FVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
DLV+ D+ MP +GI+ EI + P++V+++ + ++ +A +G Y++KP +
Sbjct: 60 DLVIMDVKMPRRDGIDAASEIASKRIA-PIVVLTAFSQRDLVERARDAGAMAYLVKPFSI 118
Query: 80 DDLKNVWQYAMT 91
DL + A++
Sbjct: 119 SDLIPAIELAVS 130
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
VT EAL ++ D+++ L +PE++G+E+ K I + + +P++++S+ D E
Sbjct: 29 VTAFNGREALEQFEAEQP-DIIILXLMLPEIDGLEVAKTIRKT-SSVPILMLSAKDSEFD 86
Query: 61 IMKALASGVAFYILKPLNPDDLK 83
+ L G Y+ KP + +L+
Sbjct: 87 KVIGLELGADDYVTKPFSNRELQ 109
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
DL++ D+ +P +G+E+ +E+ +++ +P++++++ D E + L G Y+ KP +
Sbjct: 48 DLILLDIMLPNKDGVEVCREVRKKYD-MPIIMLTAKDSEIDKVIGLEIGADDYVTKPFST 106
Query: 80 DDL 82
+L
Sbjct: 107 REL 109
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
DL++ D+ +P +G+E+ +E+ +++ +P++++++ D E + L G Y+ KP +
Sbjct: 48 DLILLDIMLPNKDGVEVCREVRKKYD-MPIIMLTAKDSEIDKVIGLEIGADDYVTKPFST 106
Query: 80 DDL 82
+L
Sbjct: 107 REL 109
>pdb|4E7O|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7O|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7P|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
pdb|4E7P|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
Length = 150
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 16 QRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
+ +D+ + D+ MP G+E+ + I E V+V+++ R +A+ +GV Y+LK
Sbjct: 64 KESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLK 123
Query: 76 PLNPDDLKNVWQYAMTYKKAKSISIDE 102
+ DL + +K S + E
Sbjct: 124 ERSIADLMQTLHTVLEGRKEYSPELME 150
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
EA +R ++ IDLV D+ E + L + I EEF V V+S+ + +I+ ++ +
Sbjct: 39 EAFTFLRREK-IDLVFVDVFEGE-ESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKA 96
Query: 68 GVAFYILKPLNPDDL 82
G YILKP D L
Sbjct: 97 GAVDYILKPFRLDYL 111
>pdb|3CU5|A Chain A, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
pdb|3CU5|B Chain B, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
Length = 141
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
++++TD+ MP M+GIEL I + + V+ MS + + A+ Y+ KP++P
Sbjct: 51 NVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDP 110
Query: 80 DDLKNVWQYAM 90
++ + + ++
Sbjct: 111 SEIMDALKQSI 121
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 18 DIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
+ID+V + MP+M+GI I E + V+++S+ +E ++ L G +I+KPL
Sbjct: 83 NIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPL 142
Query: 78 NPDDLKNVWQYAMT 91
D V Q M+
Sbjct: 143 ---DRAKVLQRVMS 153
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
++AL V +R DLV+ D+ +P M+GIE+ K + ++ V++M++ +I ++
Sbjct: 37 LQALDIVTKERP-DLVLLDMKIPGMDGIEIAKRMKVIDENIRVIIMTAYGELDMIQESKE 95
Query: 67 SGVAFYILKPLNPDDLKN 84
G + KP + D++++
Sbjct: 96 LGALTHFAKPFDIDEIRD 113
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D+++TD+ P++ G+E I V+V+S+ +KA+ GV ++ KP+ P
Sbjct: 53 DVIITDIRXPKLGGLEXLDRIKAGGAKPYVIVISAFSEXKYFIKAIELGVHLFLPKPIEP 112
Query: 80 DDL 82
L
Sbjct: 113 GRL 115
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFT--HLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
DL++ D +P +GI+ K + E +PV+++++ E ++ L +G YI KP
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 78 NPDDL 82
+P +L
Sbjct: 108 SPKEL 112
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFT--HLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
DL++ D +P +GI+ K + E +PV+++++ E ++ L +G YI KP
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 78 NPDDL 82
+P +L
Sbjct: 108 SPKEL 112
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
++AL V +R DLV+ D+ +P M+GIE+ K + ++ V++M++ +I ++
Sbjct: 35 LQALDIVTKERP-DLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKE 93
Query: 67 SGVAFYILKPLNPDDLKN 84
G + KP + D++++
Sbjct: 94 LGALTHFAKPFDIDEIRD 111
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
++AL V +R DLV+ D+ +P M+GIE+ K + ++ V++M++ +I ++
Sbjct: 37 LQALDIVTKERP-DLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKE 95
Query: 67 SGVAFYILKPLNPDDLKN 84
G + KP + D++++
Sbjct: 96 LGALTHFAKPFDIDEIRD 113
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++ +MP M+G+EL K I + + LPV+++ ++ ++ I+ A +G + +++KP
Sbjct: 52 FVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 21 LVVTDLHMPEMNGIELQKEINEEF--THLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
+VV D+ +P+ +G E+ + I E T + ++ + SDD ESV +K +G Y+ KP N
Sbjct: 46 VVVLDVXLPDYSGYEICRXIKETRPETWVILLTLLSDD-ESV-LKGFEAGADDYVTKPFN 103
Query: 79 PDDL 82
P+ L
Sbjct: 104 PEIL 107
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 21 LVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80
+VV D+ +P+ +G E+ + I E V++++ + ++K +G Y+ KP NP+
Sbjct: 46 VVVLDVXLPDYSGYEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPE 105
Query: 81 DL 82
L
Sbjct: 106 IL 107
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
++AL V +R DLV+ D+ +P M+GIE+ K + ++ V++M++ +I ++
Sbjct: 39 LQALDIVTKERP-DLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKE 97
Query: 67 SGVAFYILKPLNPDDLKN 84
G + KP + D++++
Sbjct: 98 LGALTHFAKPFDIDEIRD 115
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
++AL V +R DLV+ D+ +P M+GIE+ K + ++ V++M++ +I ++
Sbjct: 37 LQALDIVTKERP-DLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKE 95
Query: 67 SGVAFYILKPLNPDDLKN 84
G + KP + D++++
Sbjct: 96 LGALTHFAKPFDIDEIRD 113
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
NARL
Length = 215
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 28 MPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDL 82
MP MNG+E ++ E+ ++V S + E ++ AL G Y+LK + P+DL
Sbjct: 61 MPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDL 115
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 15 IQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMS-SDDRESVIMKALASGVAFYI 73
I+ D++ D+ MP +NGIE K I ++ +MV S +++ ++ ++AL +G +I
Sbjct: 68 IELKPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFI 127
Query: 74 LKP 76
KP
Sbjct: 128 TKP 130
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 21 LVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
++VT L MP+M+G+EL + + + ++P +V++ + ++A+ +G +I KP
Sbjct: 50 VLVTXLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPF 106
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 20 DLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
DL+V + MP M+G + K++ E E+ +PV+V+++ E AL+ G + KP
Sbjct: 48 DLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPF 107
Query: 78 NP 79
+P
Sbjct: 108 SP 109
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 21 LVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80
L++ DL +P+M+G ++ IN+ V++ ++ + + + G ++ KP+N D
Sbjct: 51 LIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINAD 110
Query: 81 DLKNVWQYAMTYKKAK 96
LK A+ K+AK
Sbjct: 111 RLKT--SVALHLKRAK 124
>pdb|3CZ5|A Chain A, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|B Chain B, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|C Chain C, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
pdb|3CZ5|D Chain D, Crystal Structure Of Two-component Response Regulator,
Luxr Family, From Aurantimonas Sp. Si85-9a1
Length = 153
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 3 VTRPVEALATVRIQRDI--DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
V +A R+ R+ D+VV DL +P GIE + I + +++ + +
Sbjct: 34 VAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAF 93
Query: 61 IMKALASGVAFYILKPLNPDDLKNVWQYAMTYKKAKSISIDE 102
+KA +G + Y+ K +P +L + + ++A S I +
Sbjct: 94 ALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRAMSPDIAQ 135
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
++AL V +R DLV+ D+ +P M+GIE+ K + ++ V++M++ +I ++
Sbjct: 37 LQALDIVTKERP-DLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKE 95
Query: 67 SGVAFYILKPLNPDDLKN 84
G KP + D++++
Sbjct: 96 LGALTAFAKPFDIDEIRD 113
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 35.8 bits (81), Expect = 0.063, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFT--HLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
DL++ + +P +GI+ K + E +PV+++++ E ++ L +G YI KP
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 78 NPDDL 82
+P +L
Sbjct: 108 SPKEL 112
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 36/63 (57%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D+ + DL +P+ +G+ L + LP++V+++ + ++ L++G Y+ KP +
Sbjct: 46 DIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHI 105
Query: 80 DDL 82
+++
Sbjct: 106 EEV 108
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
++AL V +R DLV+ D+ +P M+GIE+ K + ++ V++M++ + ++
Sbjct: 37 LQALDIVTKERP-DLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMAQESKE 95
Query: 67 SGVAFYILKPLNPDDLKN 84
G + KP + D++++
Sbjct: 96 LGALTHFAKPFDIDEIRD 113
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
V++D + P +G+EL K I + + LPV+ ++++ ++ I+ A +G + +++KP
Sbjct: 52 FVISDWNXPNXDGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKPFT 111
Query: 79 PDDLK 83
L+
Sbjct: 112 AATLE 116
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 38/69 (55%)
Query: 22 VVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81
+V D+ MP M+GIELQ+++ +P++ +++ + ++A+ +G ++ KP
Sbjct: 52 LVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQA 111
Query: 82 LKNVWQYAM 90
L + + +
Sbjct: 112 LLDAIEQGL 120
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 20 DLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMS--SDDRESVIMKALASGVAFYILK 75
DL+++D+ MPEM+G L + + + +PV++++ SD R+ ++++L G +I K
Sbjct: 53 DLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRD--VVRSLECGADDFITK 110
Query: 76 P 76
P
Sbjct: 111 P 111
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66
++AL V +R DLV+ + +P M+GIE+ K + ++ V++M++ +I ++
Sbjct: 37 LQALDIVTKERP-DLVLLXMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKE 95
Query: 67 SGVAFYILKPLNPDDLKN 84
G + KP + D++++
Sbjct: 96 LGALTHFAKPFDIDEIRD 113
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D+V+ D+ +P +G E+ K + E + PV+++++ +K L G Y+ KP +
Sbjct: 48 DVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDL 107
Query: 80 DDL 82
+L
Sbjct: 108 REL 110
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
D+ + D MP M+G ++ + V+++S+ D +++ +AL G A ++LK
Sbjct: 63 DVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLK 118
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 21 LVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80
+V++D+ MP M+G+ L ++I LP+++++ + ++A+ G +I KP D
Sbjct: 50 IVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAAD 109
Query: 81 DL 82
L
Sbjct: 110 RL 111
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 21 LVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80
+V++D+ MP M+G+ L ++I LP+++++ + ++A+ G +I KP D
Sbjct: 50 IVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAAD 109
Query: 81 DL 82
L
Sbjct: 110 RL 111
>pdb|3LUA|A Chain A, Crystal Structure Of A Signal Receiver Domain Of Two
Component Signal Transduction (Histidine Kinase) From
Clostridium Thermocellum
Length = 140
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 15 IQRDID---LVVTDLHMP-EMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASG 68
I +D+D L++ D+ P E G+E+ I N + PV++ + D AL
Sbjct: 44 IFKDLDSITLIIXDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFK 103
Query: 69 VAFYILKPLNPDDLKN 84
V+ YILKP L+N
Sbjct: 104 VSDYILKPYPTKRLEN 119
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
DLV+ D+ MP ++G+E+ EI ++ ++++++ + + A+ Y++K N
Sbjct: 47 DLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYRSDLSSWAADE--YVVKSFNF 104
Query: 80 DDLK 83
D+LK
Sbjct: 105 DELK 108
>pdb|2QVG|A Chain A, The Crystal Structure Of A Two-Component Response
Regulator From Legionella Pneumophila
Length = 143
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 40/62 (64%), Gaps = 6/62 (9%)
Query: 21 LVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSS--DDRESVIMKALASGVAFYILKP 76
L++ D+++P+ NGIE KE+ ++ FT + V V+++ ++ + ++L + +++KP
Sbjct: 62 LILLDINIPKXNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESL--NIRGHLIKP 119
Query: 77 LN 78
L+
Sbjct: 120 LD 121
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSS----DDRESVIMKALASGVAFYILK 75
D +V D++MP ++G+ + + +PV V+S+ DDR + L +G Y++K
Sbjct: 53 DAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDR----VAGLEAGADDYLVK 108
Query: 76 P 76
P
Sbjct: 109 P 109
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHL-PVMVMSSDDRESVIMKALASGVAFYILKPLN 78
+++ D+ MP+++G+ K I + + P++ +++ +S I + L SG+ ++ KP+
Sbjct: 54 NMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIK 113
Query: 79 PDDLKNVW-QYAMTYKKAKS 97
LK + ++ Y+ K+
Sbjct: 114 RPKLKTILTEFCAAYQGKKN 133
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHL-PVMVMSSDDRESVIMKALASGVAFYILKPLN 78
+++ D+ MP+++G+ K I + + P++ +++ +S I + L SG+ ++ KP+
Sbjct: 53 NMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIK 112
Query: 79 PDDLKNVW-QYAMTYKKAKS 97
LK + ++ Y+ K+
Sbjct: 113 RPKLKTILTEFCAAYQGKKN 132
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D+V+ DL +P M+G ++ K++ + +PV+++++ D E + L G Y+ KP +
Sbjct: 50 DIVLLDLMLPGMSGTDVCKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSA 108
Query: 80 DDL 82
+L
Sbjct: 109 REL 111
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDR---ESVIMKALASG--VAFYIL 74
D+++ DL MP+M+GIE+ + + E + ++++S D S AL+ G V
Sbjct: 48 DIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFT 107
Query: 75 KPLNPDDL 82
KP+N + L
Sbjct: 108 KPINTEVL 115
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
DL+ ++ + + +G L K+I T P++ + + + I+ AL SG Y++KPLN
Sbjct: 50 DLIFLEIILSDGDGWTLCKKI-RNVTTCPIVYXTYINEDQSILNALNSGGDDYLIKPLNL 108
Query: 80 DDLKNVWQYAMTYKKAKSI 98
+ L Y K K+I
Sbjct: 109 EIL---------YAKVKAI 118
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 6 PVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMK 63
P +A+A +Q +++ DL MP ++G+ L +E N +P++V+S+ + +
Sbjct: 50 PHQAIAQA-VQIKPTVILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSA 108
Query: 64 ALASGVAFYILKPLNPDDLKNV 85
A A+G Y++K PD+++ V
Sbjct: 109 AFAAGANDYLVKL--PDNIELV 128
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 20 DLVVTDLHMPEMNG--IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
DLV+ D + N + L+ + ++ ++P++++ S + + I+ L SG Y+ KP
Sbjct: 48 DLVILDXDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPF 107
Query: 78 NPDDL 82
N +DL
Sbjct: 108 NRNDL 112
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 16 QRDIDLVVTDLHMPEMNGIELQKEINEEFT--HLPVMVMS---SDDRESVIMKALASGV 69
Q DL++ D+ +P NG E+ + + H P+++++ SDDR A AS V
Sbjct: 49 QAKYDLIILDIGLPIANGFEVXSAVRKPGANQHTPIVILTDNVSDDRAKQCXAAGASSV 107
>pdb|2JK1|A Chain A, Crystal Structure Of The Wild-Type Hupr Receiver Domain
pdb|2VUI|B Chain B, Crystal Structure Of The Hupr Receiver Domain In
Inhibitory Phospho-State
Length = 139
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
V + EA + + + +++ D MP G++ E+ E + ++++ +
Sbjct: 27 VLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSAS 86
Query: 61 IMKALA-SGVAFYILKPLNPDDL 82
+M A+ +G+ ++ KP +P+ L
Sbjct: 87 MMAAINDAGIHQFLTKPWHPEQL 109
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFT--HLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
DL++ +P +GI+ K + E +PV+++++ E ++ L +G I KP
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPF 107
Query: 78 NPDDL 82
+P +L
Sbjct: 108 SPKEL 112
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
D ++ D+ +P ++G L K + + LP++ +++ S + +G Y+ KP
Sbjct: 50 DALICDVLLPGIDGYTLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPF 109
Query: 78 NPDDL 82
P +L
Sbjct: 110 EPQEL 114
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFT--HLPVMVMSSDDRESVIMKALASGVAFYILKPL 77
DL++ +P +GI+ K + E +PV+++++ E ++ L +G I KP
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPF 107
Query: 78 NPDDL 82
+P +L
Sbjct: 108 SPKEL 112
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQK 38
EAL + Q ++DL++ D+ MP M+G+E +
Sbjct: 50 EALDKLAAQPNVDLILLDIEMPVMDGMEFLR 80
>pdb|3ILH|A Chain A, Crystal Structure Of Two Component Response Regulator From
Cytophaga Hutchinsonii
Length = 146
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 21 LVVTDLHMPEMNGIELQKEINEEFTHLP----VMVMSS--DDRESVIMKALASG-VAFYI 73
++ D++MP +NG EL + F + V ++SS D R+ KA AS V +Y+
Sbjct: 63 IICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQA--KAEASDWVDYYV 120
Query: 74 LKPLNPDDLKNVW 86
KPL + L N++
Sbjct: 121 SKPLTANALNNLY 133
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 43/81 (53%)
Query: 16 QRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75
++ ++V+ L +P++NG+E+ K I E V+V++ ++A+ G ++ K
Sbjct: 42 EKHFNVVLLXLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTK 101
Query: 76 PLNPDDLKNVWQYAMTYKKAK 96
P ++++ A+ ++K +
Sbjct: 102 PCMLEEIELTINKAIEHRKLR 122
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 21 LVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
LV++D +MP+M+G+ L + + N +++++ +++ KA A G + KP
Sbjct: 54 LVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFT 113
Query: 79 PDDLK 83
+ +K
Sbjct: 114 IEKMK 118
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
D+V+ D+ +P +G E+ K E + PV+ +++ +K L G Y+ KP +
Sbjct: 48 DVVILDIXLPVHDGWEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDL 107
Query: 80 DDL 82
+L
Sbjct: 108 REL 110
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 21 LVVTDLHMPEMNGIELQKEI--NEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78
+++ DL MP ++G+ L N +P++V+S+ + +V A A+G Y++K
Sbjct: 66 VILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKL-- 123
Query: 79 PDDLKNV 85
PD ++ V
Sbjct: 124 PDAIELV 130
>pdb|2VUH|B Chain B, Crystal Structure Of The D55e Mutant Of The Hupr Receiver
Domain
Length = 139
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESV 60
V + EA + + + +++ + MP G++ E+ E + ++++ +
Sbjct: 27 VLTAQGAEAAIAILEEEWVQVIICEQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSAS 86
Query: 61 IMKALA-SGVAFYILKPLNPDDL 82
+M A+ +G+ ++ KP +P+ L
Sbjct: 87 MMAAINDAGIHQFLTKPWHPEQL 109
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79
DLV+ D+ P ++G+E+ EI ++ ++++++ + A+ Y++K N
Sbjct: 47 DLVILDIEXPGISGLEVAGEIRKKKKDAKIILLTAYSHYRSDXSSWAADE--YVVKSFNF 104
Query: 80 DDLK 83
D+LK
Sbjct: 105 DELK 108
>pdb|2QSJ|A Chain A, Crystal Structure Of A Luxr Family Dna-Binding Response
Regulator From Silicibacter Pomeroyi
pdb|2QSJ|B Chain B, Crystal Structure Of A Luxr Family Dna-Binding Response
Regulator From Silicibacter Pomeroyi
Length = 154
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS 67
+ALA + +DL++ D+++P+ I+ + V ++S + +I AL +
Sbjct: 40 DALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEA 99
Query: 68 GVAFYILKPLNPDDL 82
G +I K +P L
Sbjct: 100 GADGFIPKSADPQVL 114
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSS--DDRESVIMKALASGVAFYILKP 76
D++ D+ MP M+G++ +++ +PV+++SS V ++AL G ++ KP
Sbjct: 51 DVLTLDVEMPRMDGLDFLEKLM-RLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKP 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,894,879
Number of Sequences: 62578
Number of extensions: 433464
Number of successful extensions: 894
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 156
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)