Query 043479
Match_columns 534
No_of_seqs 422 out of 3108
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:02:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.8 1.5E-18 5E-23 138.2 7.6 62 156-217 2-63 (64)
2 1a04_A Nitrate/nitrite respons 99.7 1.2E-16 4.2E-21 150.8 17.8 162 2-214 36-197 (215)
3 3to5_A CHEY homolog; alpha(5)b 99.7 6.8E-17 2.3E-21 146.3 11.6 89 2-91 42-132 (134)
4 1yio_A Response regulatory pro 99.7 1.8E-16 6E-21 148.7 12.2 152 2-213 33-184 (208)
5 3r0j_A Possible two component 99.7 1.5E-15 5.1E-20 147.6 17.4 173 2-215 52-229 (250)
6 3rqi_A Response regulator prot 99.6 3.7E-16 1.3E-20 145.0 10.4 92 2-94 36-127 (184)
7 3q9s_A DNA-binding response re 99.6 9.8E-16 3.3E-20 149.9 13.6 164 2-214 66-234 (249)
8 1kgs_A DRRD, DNA binding respo 99.6 3E-15 1E-19 141.7 16.4 169 2-215 31-204 (225)
9 3c3w_A Two component transcrip 99.6 3.9E-16 1.3E-20 149.6 9.1 159 2-212 32-190 (225)
10 3klo_A Transcriptional regulat 99.6 2E-16 7E-21 151.1 7.0 159 4-212 40-200 (225)
11 1p2f_A Response regulator; DRR 99.6 1.4E-14 4.8E-19 137.1 15.2 163 2-214 30-195 (220)
12 1ys7_A Transcriptional regulat 99.6 8.5E-15 2.9E-19 139.3 13.2 172 2-215 36-212 (233)
13 2oqr_A Sensory transduction pr 99.6 1.3E-14 4.4E-19 138.0 14.1 171 2-214 33-208 (230)
14 3gl9_A Response regulator; bet 99.6 1.4E-14 4.8E-19 124.9 12.0 89 2-91 31-121 (122)
15 2gwr_A DNA-binding response re 99.6 1.3E-14 4.6E-19 139.6 12.9 167 2-214 34-205 (238)
16 3t6k_A Response regulator rece 99.6 3.3E-14 1.1E-18 124.9 13.2 93 2-95 33-127 (136)
17 3f6p_A Transcriptional regulat 99.5 2.8E-14 9.6E-19 122.4 11.2 89 2-92 31-119 (120)
18 3b2n_A Uncharacterized protein 99.5 3.9E-14 1.3E-18 123.5 12.2 93 2-95 34-126 (133)
19 3crn_A Response regulator rece 99.5 6.6E-14 2.3E-18 121.8 13.0 94 2-96 32-125 (132)
20 2pl1_A Transcriptional regulat 99.5 1.1E-13 3.8E-18 117.3 13.8 91 2-93 29-119 (121)
21 1dbw_A Transcriptional regulat 99.5 8.4E-14 2.9E-18 119.7 13.1 90 2-92 32-121 (126)
22 3h1g_A Chemotaxis protein CHEY 99.5 6E-14 2.1E-18 121.6 12.1 90 2-91 35-126 (129)
23 4e7p_A Response regulator; DNA 99.5 6.1E-14 2.1E-18 124.7 11.8 94 2-96 51-144 (150)
24 2r25_B Osmosensing histidine p 99.5 8.2E-14 2.8E-18 121.9 12.1 91 2-92 32-127 (133)
25 3jte_A Response regulator rece 99.5 1.5E-13 5.2E-18 120.4 13.7 96 2-97 32-128 (143)
26 3hv2_A Response regulator/HD d 99.5 1.3E-13 4.5E-18 122.9 12.9 94 2-96 43-137 (153)
27 3eul_A Possible nitrate/nitrit 99.5 1.2E-13 4E-18 122.9 12.5 95 2-97 46-140 (152)
28 1srr_A SPO0F, sporulation resp 99.5 7.5E-14 2.6E-18 119.5 10.8 89 2-91 32-120 (124)
29 3hdg_A Uncharacterized protein 99.5 7.9E-14 2.7E-18 121.4 11.1 95 2-97 36-130 (137)
30 3f6c_A Positive transcription 99.5 3.8E-14 1.3E-18 122.6 8.8 95 2-97 31-125 (134)
31 1tmy_A CHEY protein, TMY; chem 99.5 1E-13 3.6E-18 117.6 11.3 88 2-90 32-119 (120)
32 3cfy_A Putative LUXO repressor 99.5 1.5E-13 5.3E-18 120.7 12.2 92 2-94 33-124 (137)
33 3eod_A Protein HNR; response r 99.5 9.3E-14 3.2E-18 119.8 10.6 91 2-93 36-127 (130)
34 3kto_A Response regulator rece 99.5 5E-14 1.7E-18 123.3 8.8 94 2-96 35-130 (136)
35 3kht_A Response regulator; PSI 99.5 2E-13 6.9E-18 120.0 12.5 93 2-95 36-131 (144)
36 1zgz_A Torcad operon transcrip 99.5 3.5E-13 1.2E-17 114.7 13.4 89 2-92 31-119 (122)
37 1jbe_A Chemotaxis protein CHEY 99.5 3.5E-13 1.2E-17 115.6 13.3 90 2-92 34-125 (128)
38 1xhf_A DYE resistance, aerobic 99.5 3.8E-13 1.3E-17 114.6 13.4 89 2-92 32-120 (123)
39 1dz3_A Stage 0 sporulation pro 99.5 1.7E-13 5.7E-18 118.5 11.3 91 2-93 33-124 (130)
40 3gt7_A Sensor protein; structu 99.5 3.3E-13 1.1E-17 120.9 13.3 93 2-95 36-130 (154)
41 3heb_A Response regulator rece 99.5 5E-13 1.7E-17 118.8 14.2 95 2-96 35-139 (152)
42 3m6m_D Sensory/regulatory prot 99.5 2.7E-13 9.3E-18 120.2 12.3 90 2-92 43-136 (143)
43 2a9o_A Response regulator; ess 99.5 3.3E-13 1.1E-17 114.0 11.8 89 2-92 30-118 (120)
44 3hdv_A Response regulator; PSI 99.5 3.8E-13 1.3E-17 116.9 12.3 94 2-95 36-130 (136)
45 3cu5_A Two component transcrip 99.5 1.6E-13 5.3E-18 121.3 10.0 92 2-94 34-125 (141)
46 3cnb_A DNA-binding response re 99.5 5.5E-13 1.9E-17 116.1 13.4 93 2-95 39-133 (143)
47 3grc_A Sensor protein, kinase; 99.5 1.3E-13 4.4E-18 120.4 9.3 94 2-96 35-131 (140)
48 3nhm_A Response regulator; pro 99.5 2.6E-13 8.8E-18 117.2 11.0 93 2-96 32-126 (133)
49 3kcn_A Adenylate cyclase homol 99.5 4.7E-13 1.6E-17 119.0 12.9 94 2-95 32-126 (151)
50 3lua_A Response regulator rece 99.5 1E-13 3.5E-18 121.3 8.3 95 2-96 34-131 (140)
51 1i3c_A Response regulator RCP1 99.5 6.1E-13 2.1E-17 118.3 13.5 92 2-93 39-138 (149)
52 2jk1_A HUPR, hydrogenase trans 99.5 6.6E-13 2.3E-17 116.2 13.4 92 2-94 29-121 (139)
53 1mvo_A PHOP response regulator 99.5 3.2E-13 1.1E-17 117.1 11.1 92 2-94 32-123 (136)
54 2qzj_A Two-component response 99.5 4.2E-13 1.4E-17 117.7 11.8 91 2-94 33-123 (136)
55 4dad_A Putative pilus assembly 99.4 1.2E-13 4.1E-18 121.7 8.2 92 2-93 50-142 (146)
56 2zay_A Response regulator rece 99.4 6.5E-13 2.2E-17 116.9 12.8 92 2-94 37-130 (147)
57 3hzh_A Chemotaxis response reg 99.4 3.1E-13 1E-17 121.5 10.8 89 2-91 66-156 (157)
58 1p6q_A CHEY2; chemotaxis, sign 99.4 2.7E-13 9.3E-18 116.5 9.9 89 2-91 36-126 (129)
59 2lpm_A Two-component response 99.4 8.4E-15 2.9E-19 130.9 0.3 83 2-90 38-120 (123)
60 3n53_A Response regulator rece 99.4 1E-13 3.5E-18 121.3 6.9 95 2-97 31-127 (140)
61 1zh2_A KDP operon transcriptio 99.4 4.4E-13 1.5E-17 113.4 10.6 90 2-93 30-119 (121)
62 1mb3_A Cell division response 99.4 2.4E-13 8.1E-18 115.8 8.9 90 2-92 30-121 (124)
63 3cg0_A Response regulator rece 99.4 9E-13 3.1E-17 114.5 12.7 94 2-97 39-133 (140)
64 3ilh_A Two component response 99.4 7.4E-13 2.5E-17 115.7 12.1 94 2-95 40-142 (146)
65 3cz5_A Two-component response 99.4 7.2E-13 2.5E-17 117.9 12.2 94 2-96 36-129 (153)
66 3i42_A Response regulator rece 99.4 2E-13 7E-18 117.2 8.3 90 2-93 32-123 (127)
67 3snk_A Response regulator CHEY 99.4 4.4E-14 1.5E-18 123.2 4.1 90 2-92 44-133 (135)
68 2qr3_A Two-component system re 99.4 8.1E-13 2.8E-17 114.8 11.9 93 2-95 32-129 (140)
69 2qxy_A Response regulator; reg 99.4 5.3E-13 1.8E-17 116.8 10.8 93 2-96 33-125 (142)
70 3luf_A Two-component system re 99.4 7.5E-13 2.5E-17 130.6 13.1 93 2-94 153-247 (259)
71 1k68_A Phytochrome response re 99.4 1.4E-12 4.7E-17 112.6 13.1 93 2-94 33-133 (140)
72 3sy8_A ROCR; TIM barrel phosph 99.4 1.4E-13 4.9E-18 143.9 7.6 167 2-188 33-209 (400)
73 2hqr_A Putative transcriptiona 99.4 1E-12 3.5E-17 124.5 12.8 161 2-215 29-196 (223)
74 2rjn_A Response regulator rece 99.4 1.6E-12 5.4E-17 115.8 13.2 93 2-95 36-129 (154)
75 3h5i_A Response regulator/sens 99.4 4.2E-13 1.4E-17 117.9 9.1 94 2-96 34-128 (140)
76 1k66_A Phytochrome response re 99.4 2E-12 6.9E-17 113.0 13.1 93 2-94 37-140 (149)
77 1qkk_A DCTD, C4-dicarboxylate 99.4 1.3E-12 4.4E-17 116.5 11.8 93 2-95 32-124 (155)
78 3dzd_A Transcriptional regulat 99.4 5.2E-13 1.8E-17 139.2 9.9 93 2-95 29-121 (368)
79 2jba_A Phosphate regulon trans 99.4 1.7E-13 5.7E-18 117.2 5.1 90 2-92 31-122 (127)
80 3mm4_A Histidine kinase homolo 99.4 9.7E-13 3.3E-17 124.8 10.9 91 2-94 91-198 (206)
81 3a10_A Response regulator; pho 99.4 7.6E-13 2.6E-17 111.6 9.0 86 2-90 30-115 (116)
82 2ayx_A Sensor kinase protein R 99.4 9.9E-13 3.4E-17 129.0 10.9 92 2-94 158-249 (254)
83 3cg4_A Response regulator rece 99.4 5.2E-13 1.8E-17 116.6 8.0 94 2-96 36-131 (142)
84 3n0r_A Response regulator; sig 99.4 2.1E-13 7E-18 137.3 6.0 89 2-94 190-279 (286)
85 3c3m_A Response regulator rece 99.4 1.6E-12 5.4E-17 113.9 10.5 91 2-93 32-124 (138)
86 3lte_A Response regulator; str 99.4 2.8E-12 9.6E-17 110.5 11.6 91 2-94 35-127 (132)
87 2qsj_A DNA-binding response re 99.4 9.5E-13 3.2E-17 117.0 8.8 96 2-97 34-129 (154)
88 2qv0_A Protein MRKE; structura 99.4 3.5E-12 1.2E-16 111.6 11.8 91 2-95 40-130 (143)
89 1s8n_A Putative antiterminator 99.4 2E-12 6.7E-17 121.2 10.2 91 2-94 43-133 (205)
90 3eq2_A Probable two-component 99.4 1.6E-12 5.4E-17 134.9 10.2 92 2-94 34-126 (394)
91 3eqz_A Response regulator; str 99.3 7E-13 2.4E-17 114.3 6.0 92 2-95 32-128 (135)
92 2qvg_A Two component response 99.3 6.6E-12 2.3E-16 109.7 11.9 91 2-92 38-135 (143)
93 1ny5_A Transcriptional regulat 99.3 4.3E-12 1.5E-16 133.0 12.5 92 2-94 29-120 (387)
94 1dcf_A ETR1 protein; beta-alph 99.3 4E-12 1.4E-16 110.6 10.2 89 2-92 36-129 (136)
95 1w25_A Stalked-cell differenti 99.3 6.1E-12 2.1E-16 132.6 13.1 92 2-94 30-123 (459)
96 2gkg_A Response regulator homo 99.3 4.5E-12 1.6E-16 107.5 9.6 88 2-91 34-124 (127)
97 3t8y_A CHEB, chemotaxis respon 99.3 5.8E-12 2E-16 114.3 10.8 89 2-92 56-155 (164)
98 3bre_A Probable two-component 99.3 6.3E-12 2.2E-16 127.6 12.0 89 2-91 48-138 (358)
99 2rdm_A Response regulator rece 99.3 8.7E-12 3E-16 107.2 10.9 91 2-95 34-126 (132)
100 3kyj_B CHEY6 protein, putative 99.3 4.3E-12 1.5E-16 111.8 8.0 84 2-87 44-130 (145)
101 1dc7_A NTRC, nitrogen regulati 99.3 2.1E-13 7.1E-18 115.7 -1.9 91 2-93 32-122 (124)
102 3c97_A Signal transduction his 99.3 1E-11 3.5E-16 108.7 8.3 90 2-95 39-133 (140)
103 2j48_A Two-component sensor ki 99.2 7.8E-12 2.7E-16 104.1 6.0 85 2-90 30-116 (119)
104 2pln_A HP1043, response regula 99.2 5.4E-11 1.8E-15 103.5 11.4 86 2-93 47-134 (137)
105 1qo0_D AMIR; binding protein, 99.1 1.8E-10 6.3E-15 107.0 9.2 77 17-94 51-127 (196)
106 1a2o_A CHEB methylesterase; ba 99.1 2.9E-10 9.9E-15 117.8 11.2 90 2-93 34-134 (349)
107 2b4a_A BH3024; flavodoxin-like 99.1 5.3E-11 1.8E-15 103.7 4.5 87 2-92 44-131 (138)
108 3luf_A Two-component system re 99.0 4.4E-10 1.5E-14 110.7 7.3 82 3-88 34-115 (259)
109 3cwo_X Beta/alpha-barrel prote 99.0 6.2E-10 2.1E-14 105.4 6.9 90 3-93 11-102 (237)
110 2vyc_A Biodegradative arginine 98.9 8.6E-10 3E-14 125.1 7.0 92 2-93 37-134 (755)
111 1w25_A Stalked-cell differenti 98.3 4.6E-06 1.6E-10 87.6 13.2 89 4-94 182-272 (459)
112 3cwo_X Beta/alpha-barrel prote 95.7 0.049 1.7E-06 50.7 10.2 82 5-87 131-221 (237)
113 3n75_A LDC, lysine decarboxyla 95.5 0.0089 3E-07 67.5 4.5 89 2-93 35-124 (715)
114 3hug_A RNA polymerase sigma fa 91.7 0.42 1.4E-05 39.1 6.9 53 166-221 36-88 (92)
115 3c57_A Two component transcrip 91.0 0.3 1E-05 40.6 5.3 47 165-215 25-71 (95)
116 3ulq_B Transcriptional regulat 90.8 0.31 1.1E-05 40.4 5.1 44 165-212 27-70 (90)
117 1je8_A Nitrate/nitrite respons 90.7 0.36 1.2E-05 39.0 5.4 48 164-215 18-65 (82)
118 2yxb_A Coenzyme B12-dependent 89.9 2.2 7.6E-05 38.9 10.7 88 5-94 57-147 (161)
119 2ekc_A AQ_1548, tryptophan syn 89.7 1.2 4E-05 43.9 9.2 80 10-90 37-144 (262)
120 1fse_A GERE; helix-turn-helix 88.4 0.81 2.8E-05 35.2 5.7 47 164-214 8-54 (74)
121 1x3u_A Transcriptional regulat 87.9 0.75 2.6E-05 36.0 5.3 46 166-215 15-60 (79)
122 1p4w_A RCSB; solution structur 87.8 0.77 2.6E-05 38.8 5.5 44 166-213 33-76 (99)
123 1qop_A Tryptophan synthase alp 87.7 1.8 6.1E-05 42.6 9.0 81 9-90 36-144 (268)
124 3szt_A QCSR, quorum-sensing co 87.5 0.56 1.9E-05 45.1 5.1 43 166-212 174-216 (237)
125 3vnd_A TSA, tryptophan synthas 87.2 1.7 5.8E-05 43.2 8.5 83 7-90 35-145 (267)
126 2rnj_A Response regulator prot 87.2 0.46 1.6E-05 38.9 3.7 47 164-214 26-72 (91)
127 2jpc_A SSRB; DNA binding prote 86.9 0.78 2.7E-05 34.2 4.6 40 171-214 2-41 (61)
128 3q7r_A Transcriptional regulat 86.6 1.9 6.6E-05 37.2 7.2 66 18-92 50-118 (121)
129 2o8x_A Probable RNA polymerase 86.5 1.2 4.2E-05 33.7 5.6 51 166-219 14-64 (70)
130 2q0o_A Probable transcriptiona 86.4 0.88 3E-05 43.4 5.8 44 166-213 174-217 (236)
131 1l3l_A Transcriptional activat 86.3 0.91 3.1E-05 43.3 5.8 44 166-213 172-215 (234)
132 1xsv_A Hypothetical UPF0122 pr 86.0 1.8 6E-05 37.3 6.9 53 166-221 24-76 (113)
133 2p7v_B Sigma-70, RNA polymeras 85.8 1.2 4E-05 34.3 5.2 48 166-216 4-55 (68)
134 3mzy_A RNA polymerase sigma-H 84.7 1.7 6E-05 37.7 6.4 51 167-221 109-159 (164)
135 1geq_A Tryptophan synthase alp 84.5 3.4 0.00012 39.4 9.0 78 9-89 24-129 (248)
136 3nav_A Tryptophan synthase alp 84.5 3.3 0.00011 41.3 9.0 81 8-89 38-146 (271)
137 3qp6_A CVIR transcriptional re 83.8 1.1 3.6E-05 44.1 5.1 44 166-213 196-239 (265)
138 1s7o_A Hypothetical UPF0122 pr 83.2 2.5 8.6E-05 36.4 6.6 52 166-220 21-72 (113)
139 3o63_A Probable thiamine-phosp 82.9 5.5 0.00019 38.9 9.7 85 2-89 141-238 (243)
140 3clo_A Transcriptional regulat 82.7 1.1 3.9E-05 43.4 4.8 47 166-216 196-242 (258)
141 3q58_A N-acetylmannosamine-6-p 82.6 3.7 0.00013 39.7 8.3 70 2-75 135-210 (229)
142 1ku3_A Sigma factor SIGA; heli 82.6 3.1 0.0001 32.3 6.4 48 165-215 8-59 (73)
143 1ujp_A Tryptophan synthase alp 82.1 2.9 9.9E-05 41.5 7.5 80 8-90 34-141 (271)
144 1xi3_A Thiamine phosphate pyro 82.1 7 0.00024 36.0 9.8 68 3-74 115-189 (215)
145 1yad_A Regulatory protein TENI 81.9 7.7 0.00026 36.4 10.2 69 2-74 116-191 (221)
146 1or7_A Sigma-24, RNA polymeras 81.2 2.6 8.9E-05 38.0 6.3 50 167-219 140-189 (194)
147 3qz6_A HPCH/HPAI aldolase; str 81.2 6.5 0.00022 38.6 9.7 81 8-89 28-110 (261)
148 3igs_A N-acetylmannosamine-6-p 79.4 5.7 0.00019 38.4 8.4 69 3-75 136-210 (232)
149 1tty_A Sigma-A, RNA polymerase 77.5 2.8 9.7E-05 33.9 4.8 48 166-216 17-68 (87)
150 2lfw_A PHYR sigma-like domain; 77.2 1.4 4.6E-05 39.4 3.0 53 165-220 91-143 (157)
151 1ccw_A Protein (glutamate muta 77.1 9.8 0.00033 33.5 8.6 86 4-90 41-134 (137)
152 2vws_A YFAU, 2-keto-3-deoxy su 76.9 19 0.00065 35.3 11.5 81 8-89 30-112 (267)
153 3ajx_A 3-hexulose-6-phosphate 76.7 2.6 8.8E-05 39.1 4.9 85 4-89 10-99 (207)
154 2v5j_A 2,4-dihydroxyhept-2-ENE 76.5 18 0.00063 36.0 11.4 81 8-89 51-133 (287)
155 1wv2_A Thiazole moeity, thiazo 76.4 10 0.00035 37.7 9.3 86 2-91 142-237 (265)
156 1rp3_A RNA polymerase sigma fa 76.2 4.9 0.00017 37.2 6.7 50 167-219 187-236 (239)
157 3inp_A D-ribulose-phosphate 3- 75.0 7.6 0.00026 38.1 7.9 84 5-89 41-130 (246)
158 3lab_A Putative KDPG (2-keto-3 74.6 7 0.00024 37.8 7.4 77 4-83 22-100 (217)
159 2tps_A Protein (thiamin phosph 74.0 11 0.00039 35.0 8.7 69 3-74 123-199 (227)
160 1dxe_A 2-dehydro-3-deoxy-galac 72.9 21 0.00072 34.6 10.6 80 8-88 31-112 (256)
161 2yum_A ZZZ3 protein, zinc fing 72.2 7 0.00024 30.9 5.7 58 161-223 8-68 (75)
162 1h5y_A HISF; histidine biosynt 70.8 26 0.00089 32.6 10.4 68 5-74 155-226 (253)
163 3t72_q RNA polymerase sigma fa 70.1 9.6 0.00033 32.1 6.4 51 166-219 18-72 (99)
164 2v82_A 2-dehydro-3-deoxy-6-pho 69.9 12 0.00039 34.8 7.7 82 3-90 108-197 (212)
165 4e38_A Keto-hydroxyglutarate-a 69.4 9.5 0.00033 37.1 7.1 78 4-85 43-122 (232)
166 2htm_A Thiazole biosynthesis p 69.1 17 0.00059 36.2 8.9 59 34-92 165-229 (268)
167 4fxs_A Inosine-5'-monophosphat 68.9 9.6 0.00033 40.9 7.7 65 8-74 234-299 (496)
168 3f4w_A Putative hexulose 6 pho 68.5 9.2 0.00032 35.4 6.6 84 5-90 115-207 (211)
169 3f4w_A Putative hexulose 6 pho 67.8 5.4 0.00018 37.0 4.8 84 4-89 10-99 (211)
170 1tc3_C Protein (TC3 transposas 67.7 4.4 0.00015 27.8 3.2 34 174-211 13-46 (51)
171 4avf_A Inosine-5'-monophosphat 67.3 14 0.00047 39.6 8.5 66 7-74 231-297 (490)
172 4fo4_A Inosine 5'-monophosphat 67.1 15 0.00053 37.9 8.5 66 7-74 110-176 (366)
173 1thf_D HISF protein; thermophI 67.0 41 0.0014 31.8 11.1 68 5-74 152-223 (253)
174 1rd5_A Tryptophan synthase alp 66.9 9.3 0.00032 37.0 6.5 77 10-89 38-139 (262)
175 3r2g_A Inosine 5'-monophosphat 66.8 15 0.00052 38.0 8.4 65 8-74 103-168 (361)
176 1xrs_B D-lysine 5,6-aminomutas 65.9 35 0.0012 33.8 10.5 83 5-91 168-257 (262)
177 3tqv_A Nicotinate-nucleotide p 63.8 15 0.0005 37.0 7.4 68 20-89 170-239 (287)
178 1tqj_A Ribulose-phosphate 3-ep 63.0 13 0.00045 35.5 6.7 83 5-90 18-109 (230)
179 2q1z_A RPOE, ECF SIGE; ECF sig 62.7 2.9 0.0001 37.4 1.8 47 168-217 136-182 (184)
180 3qja_A IGPS, indole-3-glycerol 62.2 22 0.00077 35.1 8.3 72 2-75 168-242 (272)
181 4adt_A Pyridoxine biosynthetic 62.1 45 0.0016 33.4 10.7 88 2-92 131-260 (297)
182 1izc_A Macrophomate synthase i 62.1 32 0.0011 35.1 9.7 80 9-89 55-139 (339)
183 1x41_A Transcriptional adaptor 61.6 21 0.00072 27.0 6.3 46 161-210 8-53 (60)
184 3l0g_A Nicotinate-nucleotide p 61.4 21 0.00072 36.1 8.0 54 34-89 195-248 (300)
185 1req_A Methylmalonyl-COA mutas 61.3 31 0.0011 38.9 10.2 85 5-91 635-722 (727)
186 3usb_A Inosine-5'-monophosphat 61.3 24 0.00081 38.0 9.0 66 7-74 258-324 (511)
187 2xij_A Methylmalonyl-COA mutas 61.2 36 0.0012 38.6 10.7 89 4-94 642-733 (762)
188 1ka9_F Imidazole glycerol phos 60.8 59 0.002 30.6 10.9 78 6-85 154-241 (252)
189 3jr2_A Hexulose-6-phosphate sy 60.6 7.6 0.00026 36.6 4.4 85 4-89 16-105 (218)
190 1wa3_A 2-keto-3-deoxy-6-phosph 60.3 51 0.0017 30.1 10.0 80 4-86 19-100 (205)
191 1h5y_A HISF; histidine biosynt 60.2 52 0.0018 30.5 10.3 68 5-74 34-105 (253)
192 2yw3_A 4-hydroxy-2-oxoglutarat 60.1 26 0.0009 32.9 8.1 82 3-91 111-199 (207)
193 2p10_A MLL9387 protein; putati 59.6 39 0.0013 33.9 9.5 74 1-76 168-260 (286)
194 1h1y_A D-ribulose-5-phosphate 59.4 22 0.00076 33.6 7.5 66 7-74 126-200 (228)
195 3paj_A Nicotinate-nucleotide p 58.5 21 0.00072 36.4 7.5 54 34-89 219-272 (320)
196 1jcn_A Inosine monophosphate d 58.3 32 0.0011 36.7 9.3 66 7-74 257-323 (514)
197 1xm3_A Thiazole biosynthesis p 58.1 30 0.001 33.8 8.4 42 33-75 166-207 (264)
198 2w6r_A Imidazole glycerol phos 57.9 38 0.0013 32.3 9.0 69 5-75 157-229 (266)
199 3ceu_A Thiamine phosphate pyro 56.9 15 0.00051 34.4 5.8 68 2-73 94-170 (210)
200 3sz8_A 2-dehydro-3-deoxyphosph 56.8 21 0.00071 35.8 7.0 74 5-78 149-245 (285)
201 3kp1_A D-ornithine aminomutase 56.4 49 0.0017 37.1 10.3 85 5-93 645-736 (763)
202 1qo2_A Molecule: N-((5-phospho 55.9 69 0.0024 30.1 10.4 78 5-85 145-239 (241)
203 2i2x_B MTAC, methyltransferase 55.3 25 0.00086 34.1 7.3 79 5-90 162-242 (258)
204 2w6r_A Imidazole glycerol phos 55.2 36 0.0012 32.5 8.3 69 5-75 31-103 (266)
205 3ffs_A Inosine-5-monophosphate 55.0 23 0.00077 37.2 7.2 65 7-74 146-211 (400)
206 3gnn_A Nicotinate-nucleotide p 54.5 21 0.00072 36.0 6.7 54 34-89 197-250 (298)
207 1ep3_A Dihydroorotate dehydrog 54.2 29 0.001 33.9 7.6 56 34-90 230-291 (311)
208 1y0e_A Putative N-acetylmannos 53.0 35 0.0012 31.6 7.7 70 3-75 126-204 (223)
209 3ovp_A Ribulose-phosphate 3-ep 53.0 19 0.00066 34.5 5.9 85 4-90 17-109 (228)
210 1vli_A Spore coat polysacchari 52.0 61 0.0021 33.8 9.8 85 6-92 173-279 (385)
211 2iw5_B Protein corest, REST co 51.9 28 0.00095 34.0 6.7 58 159-221 131-190 (235)
212 1ka9_F Imidazole glycerol phos 51.8 65 0.0022 30.3 9.5 69 5-75 32-104 (252)
213 3o07_A Pyridoxine biosynthesis 51.8 31 0.001 34.7 7.2 88 3-93 122-252 (291)
214 2yus_A SWI/SNF-related matrix- 51.6 16 0.00055 29.5 4.3 45 161-210 18-62 (79)
215 3tsm_A IGPS, indole-3-glycerol 51.4 36 0.0012 33.7 7.8 71 2-74 175-248 (272)
216 2cu7_A KIAA1915 protein; nucle 50.9 40 0.0014 26.3 6.5 52 161-220 9-60 (72)
217 3tdn_A FLR symmetric alpha-bet 50.6 47 0.0016 31.5 8.2 68 5-74 36-107 (247)
218 3khj_A Inosine-5-monophosphate 50.4 42 0.0014 34.4 8.3 65 7-74 107-172 (361)
219 1vrd_A Inosine-5'-monophosphat 50.0 51 0.0017 34.8 9.2 66 7-74 239-305 (494)
220 3p3b_A Mandelate racemase/muco 49.5 43 0.0015 34.4 8.3 79 5-87 213-296 (392)
221 2gjl_A Hypothetical protein PA 49.2 77 0.0026 31.5 9.9 69 3-74 125-200 (328)
222 2wqp_A Polysialic acid capsule 49.0 95 0.0033 31.9 10.7 84 6-92 163-267 (349)
223 1x1o_A Nicotinate-nucleotide p 49.0 36 0.0012 34.0 7.3 54 35-89 184-237 (286)
224 3vk5_A MOEO5; TIM barrel, tran 48.3 42 0.0014 33.7 7.6 58 18-76 199-257 (286)
225 4af0_A Inosine-5'-monophosphat 48.0 35 0.0012 37.3 7.4 64 8-73 284-348 (556)
226 1h7n_A 5-aminolaevulinic acid 47.9 28 0.00096 35.7 6.3 64 4-70 240-305 (342)
227 3bw2_A 2-nitropropane dioxygen 47.8 85 0.0029 31.8 10.2 69 3-74 152-236 (369)
228 2hzd_A Transcriptional enhance 47.8 16 0.00055 30.1 3.7 53 161-213 6-74 (82)
229 3kts_A Glycerol uptake operon 47.6 25 0.00084 33.3 5.5 62 7-74 117-178 (192)
230 3bo9_A Putative nitroalkan dio 47.0 69 0.0024 32.0 9.2 69 3-74 131-204 (326)
231 1thf_D HISF protein; thermophI 46.9 92 0.0031 29.2 9.7 69 5-75 31-103 (253)
232 2gl5_A Putative dehydratase pr 46.7 77 0.0026 32.5 9.7 82 5-88 230-312 (410)
233 2f9f_A First mannosyl transfer 46.7 1E+02 0.0035 26.8 9.4 75 6-92 88-162 (177)
234 1p0k_A Isopentenyl-diphosphate 46.6 89 0.003 31.4 10.0 45 31-75 236-280 (349)
235 1o4u_A Type II quinolic acid p 46.6 41 0.0014 33.6 7.3 55 34-90 180-235 (285)
236 4gj1_A 1-(5-phosphoribosyl)-5- 46.2 1.1E+02 0.0039 29.2 10.3 80 5-85 152-240 (243)
237 1pv8_A Delta-aminolevulinic ac 46.2 27 0.00094 35.6 5.9 65 4-71 229-295 (330)
238 1vzw_A Phosphoribosyl isomeras 46.0 44 0.0015 31.5 7.2 79 5-85 147-238 (244)
239 4ef8_A Dihydroorotate dehydrog 45.8 23 0.00078 36.5 5.4 61 34-94 265-332 (354)
240 1sfu_A 34L protein; protein/Z- 45.8 28 0.00096 28.2 4.8 41 166-209 11-52 (75)
241 1yxy_A Putative N-acetylmannos 45.3 39 0.0013 31.6 6.7 69 3-75 140-215 (234)
242 1qgp_A Protein (double strande 44.7 32 0.0011 27.3 5.0 41 167-210 14-55 (77)
243 2y88_A Phosphoribosyl isomeras 44.3 64 0.0022 30.2 8.0 78 5-84 150-240 (244)
244 3l0g_A Nicotinate-nucleotide p 44.3 43 0.0015 33.9 7.0 66 1-73 212-277 (300)
245 2c6q_A GMP reductase 2; TIM ba 43.9 52 0.0018 33.5 7.8 56 18-74 132-188 (351)
246 3flh_A Uncharacterized protein 43.7 1.3E+02 0.0043 25.2 9.1 69 5-74 18-103 (124)
247 1qpo_A Quinolinate acid phosph 43.4 53 0.0018 32.7 7.6 55 34-90 182-236 (284)
248 1eep_A Inosine 5'-monophosphat 43.4 68 0.0023 33.0 8.7 65 8-74 156-221 (404)
249 3tj4_A Mandelate racemase; eno 42.9 1.5E+02 0.0051 30.1 11.1 83 5-89 209-292 (372)
250 2z6i_A Trans-2-enoyl-ACP reduc 42.6 1E+02 0.0034 30.8 9.6 69 3-74 117-190 (332)
251 1y80_A Predicted cobalamin bin 42.3 25 0.00085 32.7 4.7 66 5-74 127-196 (210)
252 2cqq_A RSGI RUH-037, DNAJ homo 42.2 76 0.0026 25.1 6.9 46 162-210 9-55 (72)
253 2rdx_A Mandelate racemase/muco 41.8 64 0.0022 32.8 8.1 80 5-89 201-284 (379)
254 2qjg_A Putative aldolase MJ040 41.2 1.4E+02 0.0047 28.5 10.0 78 7-90 169-257 (273)
255 1vs1_A 3-deoxy-7-phosphoheptul 40.7 87 0.003 31.0 8.6 84 6-90 161-271 (276)
256 3zwt_A Dihydroorotate dehydrog 40.5 76 0.0026 32.6 8.4 40 34-73 285-325 (367)
257 3paj_A Nicotinate-nucleotide p 40.2 73 0.0025 32.4 8.0 65 2-73 237-301 (320)
258 3ezx_A MMCP 1, monomethylamine 40.1 21 0.00071 33.9 3.8 66 5-74 131-202 (215)
259 3iwp_A Copper homeostasis prot 39.9 90 0.0031 31.3 8.5 85 1-88 44-150 (287)
260 2gek_A Phosphatidylinositol ma 39.7 1E+02 0.0035 30.0 9.1 77 6-92 273-349 (406)
261 2f6u_A GGGPS, (S)-3-O-geranylg 39.5 52 0.0018 31.9 6.6 55 20-76 165-219 (234)
262 2csu_A 457AA long hypothetical 39.5 1.4E+02 0.0049 31.3 10.6 86 6-95 356-450 (457)
263 3tha_A Tryptophan synthase alp 39.4 37 0.0013 33.4 5.6 57 35-92 77-139 (252)
264 2e6f_A Dihydroorotate dehydrog 39.3 41 0.0014 33.1 6.0 61 34-94 232-299 (314)
265 2bfw_A GLGA glycogen synthase; 39.3 1.3E+02 0.0044 26.3 8.9 74 6-91 106-179 (200)
266 2poz_A Putative dehydratase; o 39.0 74 0.0025 32.5 8.1 83 5-89 211-297 (392)
267 1h1y_A D-ribulose-5-phosphate 38.6 63 0.0022 30.4 7.0 82 5-89 20-109 (228)
268 1rpx_A Protein (ribulose-phosp 38.4 1.2E+02 0.0041 28.2 8.9 83 5-89 24-114 (230)
269 1qv9_A F420-dependent methylen 38.3 66 0.0023 31.7 7.0 60 14-76 61-120 (283)
270 3sjm_A Telomeric repeat-bindin 38.2 88 0.003 24.0 6.5 44 161-206 11-54 (64)
271 3ffs_A Inosine-5-monophosphate 38.0 1.2E+02 0.004 31.7 9.4 71 3-75 192-275 (400)
272 3tqv_A Nicotinate-nucleotide p 38.0 61 0.0021 32.5 7.0 66 1-73 203-268 (287)
273 2gdq_A YITF; mandelate racemas 37.7 1E+02 0.0035 31.4 8.9 81 5-87 196-278 (382)
274 3tjx_A Dihydroorotate dehydrog 37.5 73 0.0025 32.2 7.7 63 34-96 265-334 (354)
275 2b7n_A Probable nicotinate-nuc 37.5 46 0.0016 32.8 6.0 65 2-74 188-256 (273)
276 2gjl_A Hypothetical protein PA 37.4 1.3E+02 0.0043 29.9 9.3 62 5-75 84-145 (328)
277 3p7n_A Sensor histidine kinase 37.2 39 0.0013 31.2 5.2 42 167-212 198-239 (258)
278 1zco_A 2-dehydro-3-deoxyphosph 37.1 1.3E+02 0.0043 29.5 9.1 83 7-90 147-256 (262)
279 1vhc_A Putative KHG/KDPG aldol 37.0 2.4E+02 0.0081 26.7 10.8 63 17-83 41-103 (224)
280 2p9j_A Hypothetical protein AQ 36.6 2E+02 0.0067 24.4 9.5 57 18-76 8-82 (162)
281 3gnn_A Nicotinate-nucleotide p 36.3 1.1E+02 0.0039 30.6 8.7 64 2-72 215-278 (298)
282 1qpo_A Quinolinate acid phosph 36.2 65 0.0022 32.1 6.9 68 2-73 200-267 (284)
283 3b0p_A TRNA-dihydrouridine syn 36.2 96 0.0033 31.4 8.3 66 7-74 147-224 (350)
284 1wa3_A 2-keto-3-deoxy-6-phosph 36.0 32 0.0011 31.5 4.4 65 5-74 113-177 (205)
285 3ovp_A Ribulose-phosphate 3-ep 36.0 96 0.0033 29.5 7.8 72 18-90 134-217 (228)
286 3ddm_A Putative mandelate race 35.8 1.1E+02 0.0037 31.5 8.8 82 5-87 211-293 (392)
287 1l0o_C Sigma factor; bergerat 35.7 7.8 0.00027 35.7 0.0 47 166-215 197-243 (243)
288 1wbh_A KHG/KDPG aldolase; lyas 35.6 2.4E+02 0.0082 26.4 10.5 59 17-78 40-98 (214)
289 3oix_A Putative dihydroorotate 35.5 37 0.0013 34.7 5.1 60 34-93 262-329 (345)
290 2elk_A SPCC24B10.08C protein; 35.3 63 0.0022 24.1 5.1 45 163-210 11-55 (58)
291 2f6u_A GGGPS, (S)-3-O-geranylg 35.2 24 0.00084 34.2 3.5 64 7-79 23-88 (234)
292 3cu2_A Ribulose-5-phosphate 3- 34.9 31 0.0011 33.4 4.2 83 5-90 27-114 (237)
293 2fli_A Ribulose-phosphate 3-ep 34.7 24 0.00084 32.6 3.3 56 18-74 131-197 (220)
294 3ctl_A D-allulose-6-phosphate 34.2 96 0.0033 29.7 7.5 82 5-90 14-103 (231)
295 2d9a_A B-MYB, MYB-related prot 34.0 1E+02 0.0034 22.9 6.1 47 160-210 7-53 (60)
296 1eep_A Inosine 5'-monophosphat 33.5 1.3E+02 0.0043 31.0 8.8 70 3-74 202-284 (404)
297 3b73_A PHIH1 repressor-like pr 33.0 78 0.0027 27.0 6.0 46 162-212 8-55 (111)
298 1jub_A Dihydroorotate dehydrog 32.9 61 0.0021 31.8 6.1 59 34-92 229-295 (311)
299 3qja_A IGPS, indole-3-glycerol 32.7 2.1E+02 0.0071 28.0 9.9 56 34-90 102-159 (272)
300 1f76_A Dihydroorotate dehydrog 32.6 1.3E+02 0.0044 29.9 8.5 41 34-74 276-317 (336)
301 2qgy_A Enolase from the enviro 32.5 74 0.0025 32.5 6.8 83 5-89 206-292 (391)
302 1tv5_A Dhodehase, dihydroorota 32.4 2.2E+02 0.0074 30.1 10.5 40 34-73 360-400 (443)
303 3mkc_A Racemase; metabolic pro 32.4 1.1E+02 0.0037 31.5 8.1 82 5-88 218-300 (394)
304 2fli_A Ribulose-phosphate 3-ep 32.4 1.1E+02 0.0038 28.0 7.5 83 5-89 17-105 (220)
305 1geq_A Tryptophan synthase alp 32.2 1.3E+02 0.0043 28.3 8.0 42 33-75 179-220 (248)
306 1viz_A PCRB protein homolog; s 32.1 38 0.0013 33.0 4.3 64 7-80 23-89 (240)
307 2o56_A Putative mandelate race 32.0 80 0.0027 32.3 7.0 83 5-89 227-310 (407)
308 1g5t_A COB(I)alamin adenosyltr 32.0 65 0.0022 30.3 5.8 46 17-63 119-169 (196)
309 2nli_A Lactate oxidase; flavoe 31.9 1.5E+02 0.0052 30.2 9.1 70 4-75 238-313 (368)
310 1q6o_A Humps, 3-keto-L-gulonat 31.7 40 0.0014 31.4 4.3 85 4-89 13-102 (216)
311 1jr3_D DNA polymerase III, del 31.6 2.3E+02 0.0079 27.6 10.2 89 5-93 60-158 (343)
312 1ity_A TRF1; helix-turn-helix, 31.6 1.3E+02 0.0043 23.1 6.5 54 158-216 7-60 (69)
313 3vzx_A Heptaprenylglyceryl pho 31.5 1.9E+02 0.0065 27.8 9.1 69 6-76 139-209 (228)
314 4gmf_A Yersiniabactin biosynth 31.5 81 0.0028 32.3 6.9 35 58-92 84-118 (372)
315 3o9z_A Lipopolysaccaride biosy 31.4 1.2E+02 0.0042 29.8 8.0 49 43-91 69-121 (312)
316 1nvm_A HOA, 4-hydroxy-2-oxoval 31.4 79 0.0027 31.9 6.7 59 31-90 67-130 (345)
317 1vcf_A Isopentenyl-diphosphate 31.1 1.3E+02 0.0046 29.9 8.3 43 32-74 242-284 (332)
318 1qap_A Quinolinic acid phospho 31.1 1.1E+02 0.0037 30.6 7.6 53 34-88 196-248 (296)
319 1gox_A (S)-2-hydroxy-acid oxid 31.0 1.6E+02 0.0054 30.0 9.0 70 4-75 234-309 (370)
320 2agk_A 1-(5-phosphoribosyl)-5- 30.5 93 0.0032 30.2 6.8 78 8-86 162-256 (260)
321 4e38_A Keto-hydroxyglutarate-a 30.4 84 0.0029 30.4 6.4 65 3-73 134-200 (232)
322 2jbm_A Nicotinate-nucleotide p 30.4 52 0.0018 32.9 5.1 65 2-74 203-271 (299)
323 1qbj_A Protein (double-strande 30.0 93 0.0032 25.0 5.6 41 167-210 10-51 (81)
324 1w5q_A Delta-aminolevulinic ac 30.0 67 0.0023 32.9 5.7 63 5-71 238-302 (337)
325 3jva_A Dipeptide epimerase; en 29.9 1.3E+02 0.0044 30.3 8.1 73 5-79 195-268 (354)
326 3usb_A Inosine-5'-monophosphat 29.8 1.6E+02 0.0053 31.6 9.0 70 4-75 306-388 (511)
327 3g8r_A Probable spore coat pol 29.5 1.6E+02 0.0056 30.1 8.7 83 6-91 150-254 (350)
328 1yxy_A Putative N-acetylmannos 29.5 2.3E+02 0.0078 26.2 9.2 62 8-72 92-157 (234)
329 2nzl_A Hydroxyacid oxidase 1; 29.4 1.4E+02 0.0047 30.9 8.2 69 4-74 261-335 (392)
330 4fo4_A Inosine 5'-monophosphat 29.4 1.4E+02 0.0046 30.8 8.1 71 3-75 157-240 (366)
331 1ypf_A GMP reductase; GUAC, pu 29.4 2.4E+02 0.0083 28.1 9.9 68 3-74 157-238 (336)
332 3okp_A GDP-mannose-dependent a 29.4 78 0.0027 30.7 6.1 76 6-92 263-344 (394)
333 3mwd_B ATP-citrate synthase; A 29.4 2.4E+02 0.0083 28.6 9.9 50 4-53 209-258 (334)
334 1rd5_A Tryptophan synthase alp 29.3 81 0.0028 30.2 6.1 42 33-75 189-230 (262)
335 3iwp_A Copper homeostasis prot 29.3 1E+02 0.0036 30.8 7.0 70 3-74 165-237 (287)
336 1x1o_A Nicotinate-nucleotide p 29.1 2.2E+02 0.0074 28.3 9.3 65 2-74 202-267 (286)
337 2ox4_A Putative mandelate race 29.1 83 0.0028 32.2 6.5 80 5-86 221-301 (403)
338 3dip_A Enolase; structural gen 29.1 1.1E+02 0.0038 31.6 7.5 83 5-89 225-312 (410)
339 2ovl_A Putative racemase; stru 29.0 1.1E+02 0.0037 31.0 7.3 83 5-89 203-289 (371)
340 3c48_A Predicted glycosyltrans 28.8 1.5E+02 0.0051 29.4 8.2 75 7-92 317-391 (438)
341 2b7n_A Probable nicotinate-nuc 28.7 1.1E+02 0.0039 29.9 7.1 54 34-89 169-223 (273)
342 3w01_A Heptaprenylglyceryl pho 28.6 43 0.0015 32.6 3.9 59 7-74 26-86 (235)
343 1o60_A 2-dehydro-3-deoxyphosph 28.5 1E+02 0.0034 30.8 6.8 87 5-91 147-269 (292)
344 1me8_A Inosine-5'-monophosphat 28.1 99 0.0034 32.9 7.1 68 5-74 242-311 (503)
345 1guu_A C-MYB, MYB proto-oncoge 28.1 1.2E+02 0.0042 21.6 5.6 45 162-210 4-48 (52)
346 3fro_A GLGA glycogen synthase; 28.1 1.5E+02 0.0051 29.1 8.0 74 6-91 321-394 (439)
347 1jub_A Dihydroorotate dehydrog 27.9 1.7E+02 0.0058 28.5 8.3 67 7-75 109-192 (311)
348 3r2g_A Inosine 5'-monophosphat 27.9 2.2E+02 0.0075 29.2 9.4 68 3-75 149-228 (361)
349 2c6q_A GMP reductase 2; TIM ba 27.7 2.6E+02 0.0089 28.3 9.9 72 3-77 169-255 (351)
350 3khj_A Inosine-5-monophosphate 27.7 1.2E+02 0.0042 30.9 7.5 71 3-75 153-236 (361)
351 2cqr_A RSGI RUH-043, DNAJ homo 27.6 1.7E+02 0.0058 23.1 6.7 47 162-210 19-66 (73)
352 3exr_A RMPD (hexulose-6-phosph 27.5 48 0.0017 31.4 4.1 86 4-90 15-105 (221)
353 3beo_A UDP-N-acetylglucosamine 27.4 2.3E+02 0.0079 27.2 9.2 60 19-92 283-342 (375)
354 3sgz_A Hydroxyacid oxidase 2; 27.3 1.9E+02 0.0063 29.7 8.7 69 4-74 226-300 (352)
355 2o6l_A UDP-glucuronosyltransfe 27.3 2.9E+02 0.01 23.6 9.1 47 46-92 106-154 (170)
356 4h08_A Putative hydrolase; GDS 27.1 1.1E+02 0.0039 26.9 6.4 40 17-56 73-121 (200)
357 1p0k_A Isopentenyl-diphosphate 27.1 2.5E+02 0.0087 27.9 9.6 68 5-74 128-208 (349)
358 2qq6_A Mandelate racemase/muco 27.0 87 0.003 32.2 6.3 81 5-87 222-303 (410)
359 2x48_A CAG38821; archeal virus 27.0 74 0.0025 22.6 4.2 34 171-208 20-53 (55)
360 1l9z_H Sigma factor SIGA; heli 26.9 84 0.0029 33.2 6.2 47 167-216 375-425 (438)
361 3toy_A Mandelate racemase/muco 26.8 1.5E+02 0.005 30.4 7.9 82 5-88 225-307 (383)
362 1mdl_A Mandelate racemase; iso 26.6 87 0.003 31.4 6.1 81 5-87 201-282 (359)
363 1viz_A PCRB protein homolog; s 26.4 1.7E+02 0.0057 28.4 7.7 56 19-76 156-211 (240)
364 2gmg_A Hypothetical protein PF 26.3 46 0.0016 28.6 3.2 44 175-218 16-60 (105)
365 3ekg_A Mandelate racemase/muco 26.1 2E+02 0.0068 29.9 8.8 81 5-87 222-305 (404)
366 3q58_A N-acetylmannosamine-6-p 25.9 3.1E+02 0.011 25.9 9.5 62 7-74 92-155 (229)
367 1y0e_A Putative N-acetylmannos 25.8 2.4E+02 0.0082 25.7 8.6 55 18-74 88-145 (223)
368 1mxs_A KDPG aldolase; 2-keto-3 25.7 3.2E+02 0.011 25.9 9.5 58 17-77 50-107 (225)
369 3nvt_A 3-deoxy-D-arabino-heptu 25.6 1.6E+02 0.0056 30.4 8.0 82 7-91 266-376 (385)
370 3oa2_A WBPB; oxidoreductase, s 25.6 1.6E+02 0.0055 29.0 7.7 48 44-91 71-122 (318)
371 2qkf_A 3-deoxy-D-manno-octulos 25.4 2E+02 0.0069 28.3 8.3 73 5-77 144-239 (280)
372 2og9_A Mandelate racemase/muco 25.4 78 0.0027 32.4 5.5 83 5-89 219-305 (393)
373 2hxt_A L-fuconate dehydratase; 25.3 1.2E+02 0.0041 31.5 7.0 83 5-88 254-337 (441)
374 2xag_B REST corepressor 1; ami 25.2 1.1E+02 0.0038 32.8 6.7 49 160-213 379-427 (482)
375 3mqt_A Mandelate racemase/muco 25.1 1.1E+02 0.0036 31.5 6.4 83 5-89 213-299 (394)
376 3gr7_A NADPH dehydrogenase; fl 25.1 2.9E+02 0.0098 27.7 9.6 66 5-72 230-304 (340)
377 1tqx_A D-ribulose-5-phosphate 25.1 2.8E+02 0.0095 26.4 9.0 69 6-75 126-201 (227)
378 3nl6_A Thiamine biosynthetic b 25.1 1.8E+02 0.0061 31.5 8.4 88 2-92 114-231 (540)
379 2pgw_A Muconate cycloisomerase 25.0 96 0.0033 31.5 6.1 83 5-89 202-288 (384)
380 1jvn_A Glutamine, bifunctional 25.0 2.4E+02 0.0082 30.4 9.5 78 6-85 454-542 (555)
381 1zfj_A Inosine monophosphate d 25.0 1.9E+02 0.0064 30.3 8.5 63 10-74 238-301 (491)
382 1k1e_A Deoxy-D-mannose-octulos 24.9 3.4E+02 0.012 23.6 10.1 62 18-81 7-86 (180)
383 1kbi_A Cytochrome B2, L-LCR; f 24.9 1.7E+02 0.0058 31.4 8.2 39 34-74 332-370 (511)
384 1qap_A Quinolinic acid phospho 24.8 2.2E+02 0.0074 28.4 8.5 65 2-74 214-279 (296)
385 4dxk_A Mandelate racemase / mu 24.8 1.3E+02 0.0043 31.0 7.0 82 5-88 222-304 (400)
386 3vcn_A Mannonate dehydratase; 24.8 1.2E+02 0.004 31.7 6.7 83 5-89 239-322 (425)
387 3vkj_A Isopentenyl-diphosphate 24.6 2.2E+02 0.0075 29.1 8.7 41 35-75 256-296 (368)
388 3sr7_A Isopentenyl-diphosphate 24.6 1.5E+02 0.005 30.5 7.3 68 6-75 157-237 (365)
389 1qop_A Tryptophan synthase alp 24.5 1.7E+02 0.0058 28.2 7.5 41 34-75 194-234 (268)
390 1ypf_A GMP reductase; GUAC, pu 24.4 2.3E+02 0.0077 28.3 8.6 55 19-74 121-176 (336)
391 2din_A Cell division cycle 5-l 24.4 2E+02 0.007 21.6 6.5 53 161-222 9-61 (66)
392 2oz8_A MLL7089 protein; struct 24.4 1.8E+02 0.006 29.6 7.9 84 5-91 202-288 (389)
393 1sxj_E Activator 1 40 kDa subu 24.0 2.3E+02 0.008 27.4 8.5 73 18-93 134-209 (354)
394 3sjn_A Mandelate racemase/muco 24.0 1.3E+02 0.0043 30.7 6.7 80 6-87 207-287 (374)
395 4e4u_A Mandalate racemase/muco 23.9 1.4E+02 0.0049 30.8 7.2 78 5-84 213-291 (412)
396 3v3w_A Starvation sensing prot 23.9 1.1E+02 0.0039 31.7 6.5 82 5-88 238-320 (424)
397 3i65_A Dihydroorotate dehydrog 23.9 85 0.0029 33.0 5.5 59 34-92 332-398 (415)
398 3sr7_A Isopentenyl-diphosphate 23.9 1.9E+02 0.0065 29.7 8.0 69 5-75 219-307 (365)
399 3ugv_A Enolase; enzyme functio 23.9 1.4E+02 0.0048 30.6 7.1 80 5-86 231-311 (390)
400 4h83_A Mandelate racemase/muco 23.7 1.2E+02 0.0041 31.1 6.5 83 5-88 221-307 (388)
401 1rvk_A Isomerase/lactonizing e 23.6 96 0.0033 31.4 5.7 83 5-89 212-299 (382)
402 1oyi_A Double-stranded RNA-bin 23.6 1.3E+02 0.0044 24.6 5.3 35 173-210 20-54 (82)
403 3lkz_A Non-structural protein 23.5 1.1E+02 0.0037 31.2 5.9 62 17-92 159-222 (321)
404 3stp_A Galactonate dehydratase 23.3 1.3E+02 0.0043 31.3 6.6 79 5-85 242-321 (412)
405 2qz4_A Paraplegin; AAA+, SPG7, 23.1 2.4E+02 0.0082 25.8 8.1 21 72-92 172-192 (262)
406 3bo9_A Putative nitroalkan dio 23.1 2.8E+02 0.0097 27.5 9.1 62 5-75 90-151 (326)
407 1gte_A Dihydropyrimidine dehyd 23.1 2.2E+02 0.0075 33.0 9.3 59 34-92 775-840 (1025)
408 2dim_A Cell division cycle 5-l 23.0 2E+02 0.0067 22.0 6.2 45 161-209 9-53 (70)
409 1o4u_A Type II quinolic acid p 23.0 67 0.0023 32.0 4.2 68 2-73 199-266 (285)
410 3rr1_A GALD, putative D-galact 22.9 1.4E+02 0.0047 30.9 6.8 82 5-88 190-272 (405)
411 1l6s_A Porphobilinogen synthas 22.9 1.1E+02 0.0038 31.1 5.8 64 4-71 223-288 (323)
412 2lnd_A De novo designed protei 22.6 3E+02 0.01 22.6 7.3 46 47-92 52-101 (112)
413 2zad_A Muconate cycloisomerase 22.6 97 0.0033 30.9 5.4 81 5-88 194-277 (345)
414 3fs2_A 2-dehydro-3-deoxyphosph 22.6 88 0.003 31.5 5.0 72 5-78 170-264 (298)
415 1qo2_A Molecule: N-((5-phospho 22.5 1.4E+02 0.0048 27.9 6.3 68 4-74 30-101 (241)
416 3ik4_A Mandelate racemase/muco 22.5 2.1E+02 0.007 29.0 7.9 79 5-86 199-280 (365)
417 2a6h_F RNA polymerase sigma fa 22.4 79 0.0027 33.0 4.9 46 168-216 361-410 (423)
418 2y88_A Phosphoribosyl isomeras 22.2 3.5E+02 0.012 25.0 9.0 68 5-75 32-103 (244)
419 3n0r_A Response regulator; sig 22.2 97 0.0033 30.1 5.2 47 167-216 111-157 (286)
420 1vzw_A Phosphoribosyl isomeras 22.1 3.3E+02 0.011 25.2 8.8 68 5-75 33-104 (244)
421 3lab_A Putative KDPG (2-keto-3 22.0 1.7E+02 0.0059 28.0 6.8 66 3-74 119-186 (217)
422 2ayx_A Sensor kinase protein R 22.0 45 0.0015 31.5 2.7 59 17-91 47-105 (254)
423 1vr6_A Phospho-2-dehydro-3-deo 22.0 84 0.0029 32.3 4.8 85 6-91 229-340 (350)
424 1tzz_A Hypothetical protein L1 22.0 1.8E+02 0.0063 29.5 7.5 83 5-89 222-312 (392)
425 3jth_A Transcription activator 21.9 1.1E+02 0.0036 24.4 4.6 36 174-212 27-62 (98)
426 1ydn_A Hydroxymethylglutaryl-C 21.9 3E+02 0.01 26.7 8.8 65 5-72 24-96 (295)
427 2ps2_A Putative mandelate race 21.8 1.1E+02 0.0038 30.8 5.7 80 5-89 202-286 (371)
428 3sgz_A Hydroxyacid oxidase 2; 21.8 5E+02 0.017 26.5 10.6 39 34-74 206-244 (352)
429 3igs_A N-acetylmannosamine-6-p 21.7 4.1E+02 0.014 25.0 9.5 62 7-74 92-155 (232)
430 3bjs_A Mandelate racemase/muco 21.7 1.1E+02 0.0038 31.8 5.8 85 5-90 241-329 (428)
431 1kbi_A Cytochrome B2, L-LCR; f 21.6 3E+02 0.01 29.4 9.4 69 4-74 352-431 (511)
432 1vc4_A Indole-3-glycerol phosp 21.5 96 0.0033 30.0 5.0 70 2-74 160-235 (254)
433 1tkk_A Similar to chloromucona 21.5 1.5E+02 0.0052 29.7 6.7 83 5-89 197-285 (366)
434 2jbm_A Nicotinate-nucleotide p 21.4 1.7E+02 0.0058 29.2 6.9 53 35-89 185-238 (299)
435 1chr_A Chloromuconate cycloiso 21.3 1.9E+02 0.0065 29.2 7.4 83 5-89 200-286 (370)
436 3rcy_A Mandelate racemase/muco 21.2 1.5E+02 0.0052 30.9 6.8 79 5-85 215-294 (433)
437 1jcn_A Inosine monophosphate d 21.0 2.2E+02 0.0075 30.1 8.1 72 3-77 304-390 (514)
438 4e5t_A Mandelate racemase / mu 20.9 1.6E+02 0.0054 30.3 6.8 83 5-89 220-306 (404)
439 3r0u_A Enzyme of enolase super 20.9 1.9E+02 0.0067 29.4 7.4 72 5-78 198-272 (379)
440 4fyk_A Deoxyribonucleoside 5'- 20.9 1.5E+02 0.005 26.9 5.7 75 10-91 63-141 (152)
441 2px2_A Genome polyprotein [con 20.8 1.3E+02 0.0046 29.8 5.8 61 17-91 138-200 (269)
442 1gvd_A MYB proto-oncogene prot 20.7 1.6E+02 0.0054 21.1 4.9 44 163-210 5-48 (52)
443 2x0d_A WSAF; GT4 family, trans 20.7 1.5E+02 0.005 30.3 6.4 76 6-93 305-380 (413)
444 3r4e_A Mandelate racemase/muco 20.6 1.2E+02 0.0042 31.3 5.9 82 5-88 232-314 (418)
445 2pp0_A L-talarate/galactarate 20.5 1.1E+02 0.0036 31.4 5.4 83 5-89 232-318 (398)
446 2v82_A 2-dehydro-3-deoxy-6-pho 20.5 2.4E+02 0.0083 25.6 7.4 68 5-75 17-87 (212)
447 1xmk_A Double-stranded RNA-spe 20.5 67 0.0023 25.9 3.0 38 168-210 12-50 (79)
448 4a29_A Engineered retro-aldol 20.4 4.7E+02 0.016 25.7 9.6 73 1-75 158-233 (258)
449 2nv1_A Pyridoxal biosynthesis 20.3 92 0.0032 30.7 4.7 42 33-75 195-238 (305)
450 2qdd_A Mandelate racemase/muco 20.3 1.4E+02 0.0049 30.1 6.2 79 5-89 202-284 (378)
451 3dg3_A Muconate cycloisomerase 20.3 1.4E+02 0.0048 30.2 6.1 78 5-85 197-275 (367)
452 3i4k_A Muconate lactonizing en 20.2 1.5E+02 0.0053 30.1 6.5 80 5-86 206-286 (383)
453 2eqr_A N-COR1, N-COR, nuclear 20.2 2.7E+02 0.0092 20.8 6.3 42 161-207 12-53 (61)
454 3llm_A ATP-dependent RNA helic 20.2 1E+02 0.0035 28.5 4.8 61 3-63 160-225 (235)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.75 E-value=1.5e-18 Score=138.22 Aligned_cols=62 Identities=68% Similarity=1.090 Sum_probs=59.1
Q ss_pred CCCCCCccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q 043479 156 APKKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 217 (534)
Q Consensus 156 s~kKprv~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~ 217 (534)
..+|+|++|+++||.+|++++++||.++++||.|++.|+|+|||+++|+|||||||+.++|.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 46889999999999999999999999999999999999999999999999999999998863
No 2
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.72 E-value=1.2e-16 Score=150.79 Aligned_cols=162 Identities=22% Similarity=0.310 Sum_probs=125.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.+.. ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+.+...++++.||++||.||++.++
T Consensus 36 ~~~~~~~al~~~~~-~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~ 114 (215)
T 1a04_A 36 EASNGEQGIELAES-LDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPED 114 (215)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHH
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHH
Confidence 46799999999987 68999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccCCCCCC
Q 043479 82 LKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKKPK 161 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss~kKpr 161 (534)
|..+|+.++++....... ....+.. ..... . .. ..
T Consensus 115 L~~~i~~~~~~~~~~~~~------------------~~~~~~~-~~~~~-------~-------------~~----~~-- 149 (215)
T 1a04_A 115 LLKALHQAAAGEMVLSEA------------------LTPVLAA-SLRAN-------R-------------AT----TE-- 149 (215)
T ss_dssp HHHHHHHHHHSCCCCCTT------------------THHHHHH-HC-------------------------------C--
T ss_pred HHHHHHHHHcCCeecCHH------------------HHHHHHH-Hhccc-------c-------------cC----CC--
Confidence 999999998764322110 0000000 00000 0 00 00
Q ss_pred ccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFL 214 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~l 214 (534)
.....|+.++.+++..+.... ..++|++.++ ++..||+.|+.+.|..+
T Consensus 150 -~~~~~Lt~rE~~vl~~l~~g~-s~~~Ia~~l~---is~~TV~~hi~~i~~Kl 197 (215)
T 1a04_A 150 -RDVNQLTPRERDILKLIAQGL-PNKMIARRLD---ITESTVKVHVKHMLKKM 197 (215)
T ss_dssp -CCGGGSCHHHHHHHHHHHTTC-CHHHHHHHHT---CCHHHHHHHHHHHHHHH
T ss_pred -ccccCCCHHHHHHHHHHHcCC-CHHHHHHHHC---CCHHHHHHHHHHHHHHc
Confidence 012358999999999996544 4899999997 89999999998887744
No 3
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.70 E-value=6.8e-17 Score=146.30 Aligned_cols=89 Identities=35% Similarity=0.604 Sum_probs=83.3
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHh--hCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~--~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
+|.++.+|++.+++ .+|||||+|+.||+|||++++++||+ ..+++|||++|+..+.+...+++++||++||.||++.
T Consensus 42 ~a~~g~~al~~~~~-~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~ 120 (134)
T 3to5_A 42 EADDGLTALPMLKK-GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTA 120 (134)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCH
Confidence 47899999999987 78999999999999999999999996 4578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 043479 80 DDLKNVWQYAMT 91 (534)
Q Consensus 80 eeL~~aI~~aL~ 91 (534)
++|..+|+++++
T Consensus 121 ~~L~~~i~~~l~ 132 (134)
T 3to5_A 121 ATLKEKLDKIFE 132 (134)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh
Confidence 999999998874
No 4
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.68 E-value=1.8e-16 Score=148.69 Aligned_cols=152 Identities=18% Similarity=0.256 Sum_probs=122.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++
T Consensus 33 ~~~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~ 111 (208)
T 1yio_A 33 TFDCASTFLEHRRP-EQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQA 111 (208)
T ss_dssp EESSHHHHHHHCCT-TSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHH
T ss_pred EcCCHHHHHHhhhc-cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHH
Confidence 46789999999876 78999999999999999999999999889999999999998888899999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccCCCCCC
Q 043479 82 LKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKKPK 161 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss~kKpr 161 (534)
|..+|++++++........ . . .... .
T Consensus 112 L~~~i~~~~~~~~~~~~~~-------------------~---~--~~~~---------------------~--------- 137 (208)
T 1yio_A 112 LLDAIEQGLQLNAERRQAR-------------------E---T--QDQL---------------------E--------- 137 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------------------H---H--HHHH---------------------H---------
T ss_pred HHHHHHHHHhhhhhhHHHH-------------------H---H--HHHH---------------------H---------
Confidence 9999999987644221000 0 0 0000 0
Q ss_pred ccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIF 213 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~ 213 (534)
.....|+.++.+++..+... ...++|++.++ ++..+|+.|+.+.|..
T Consensus 138 -~~~~~Lt~rE~~vl~~l~~g-~s~~~Ia~~l~---is~~TV~~~~~~i~~K 184 (208)
T 1yio_A 138 -QLFSSLTGREQQVLQLTIRG-LMNKQIAGELG---IAEVTVKVHRHNIMQK 184 (208)
T ss_dssp -HHHHTSCHHHHHHHHHHTTT-CCHHHHHHHHT---CCHHHHHHHHHHHHHH
T ss_pred -HHHHhcCHHHHHHHHHHHcC-CcHHHHHHHcC---CCHHHHHHHHHHHHHH
Confidence 00124778899999998543 45899999998 8999999998887764
No 5
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.66 E-value=1.5e-15 Score=147.57 Aligned_cols=173 Identities=19% Similarity=0.228 Sum_probs=124.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.+.. ..|||||+|+.||+++|++++++|++..+.+|||++|+..+.....+++++||++||.||++.++
T Consensus 52 ~~~~~~~al~~~~~-~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~ 130 (250)
T 3r0j_A 52 TATNGAQALDRARE-TRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEE 130 (250)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHH
Confidence 57899999999987 68999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccCCCCCC
Q 043479 82 LKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKKPK 161 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss~kKpr 161 (534)
|..+|+.++++........... .....++ ..... .+ .. . ..
T Consensus 131 L~~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~----~~~~~------~~-----------~~-~----~~-- 171 (250)
T 3r0j_A 131 VVARLRVILRRAGKGNKEPRNV-----------RLTFADI----ELDEE------TH-----------EV-W----KA-- 171 (250)
T ss_dssp HHHHHHHHHHHHCC------CC-----------EEEETTE----EEETT------TC-----------CE-E----ET--
T ss_pred HHHHHHHHHHhhccccccccce-----------EEEECCE----EEecc------cc-----------EE-E----EC--
Confidence 9999999987643221100000 0000000 00000 00 00 0 00
Q ss_pred ccCCchhhHHHHHHHHHhc--c-CCCcHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIG--L-EKAVPKKILEFMNV--PGLTRENVASHLQKYRIFLK 215 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LG--l-ekAvpK~ILe~M~V--~GLT~~tVaSHLQKyRl~lk 215 (534)
.-...|+.++.+++..+. . .-...++|++.+-- .+.+..+|+.|+.+.|..|.
T Consensus 172 -~~~~~LT~rE~~iL~~l~~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~ 229 (250)
T 3r0j_A 172 -GQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKID 229 (250)
T ss_dssp -TEEECCCHHHHHHHHHHHHTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHC
T ss_pred -CEEEecCHHHHHHHHHHHHCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhc
Confidence 001248999999999992 1 22446789888732 23688999999999887553
No 6
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.65 E-value=3.7e-16 Score=145.04 Aligned_cols=92 Identities=16% Similarity=0.264 Sum_probs=86.0
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.+.. ..|||||+|+.||+++|++++++|++..+++|||++|+..+.+...++++.||++||.||++.++
T Consensus 36 ~~~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~ 114 (184)
T 3rqi_A 36 QAHNKDEALKLAGA-EKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVES 114 (184)
T ss_dssp EECSHHHHHHHHTT-SCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHH
T ss_pred EeCCHHHHHHHHhh-CCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHH
Confidence 57899999999987 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 043479 82 LKNVWQYAMTYKK 94 (534)
Q Consensus 82 L~~aI~~aL~~k~ 94 (534)
|..+|+++++...
T Consensus 115 L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 115 ILAALQTNASEVQ 127 (184)
T ss_dssp HHHHTSTTHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998876543
No 7
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.64 E-value=9.8e-16 Score=149.87 Aligned_cols=164 Identities=17% Similarity=0.282 Sum_probs=122.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.+.. ..|||||+|+.||+++|++++++|++ .+.+|||++|+..+.+.+.+++++||++||.||++.++
T Consensus 66 ~~~~~~~al~~~~~-~~~DlvllD~~lp~~~G~~l~~~lr~-~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~ 143 (249)
T 3q9s_A 66 HADSAMNGLIKARE-DHPDLILLDLGLPDFDGGDVVQRLRK-NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDE 143 (249)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEECCSCHHHHHHHHHHHHT-TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHc-CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHH
Confidence 47799999999987 78999999999999999999999998 68899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccCCCCCC
Q 043479 82 LKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKKPK 161 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss~kKpr 161 (534)
|..+|+.++++.......... .. ... ..+ . ... .
T Consensus 144 L~~~i~~~l~~~~~~~~~~~~------------------~~----~~~------~~~-~-----~~~---~--------- 177 (249)
T 3q9s_A 144 LLARVKVQLRQRTSESLSMGD------------------LT----LDP------QKR-L-----VTY---K--------- 177 (249)
T ss_dssp HHHHHHHHHCCCCSCCEEETT------------------EE----EET------TTT-E-----EEE---T---------
T ss_pred HHHHHHHHHhhcccCceeECC------------------EE----Eec------ccC-E-----EEE---C---------
Confidence 999999998654322110000 00 000 000 0 000 0
Q ss_pred ccCCchhhHHHHHHHHHhccC---CCcHHHHHHHcCC--CCCCHHHHHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLE---KAVPKKILEFMNV--PGLTRENVASHLQKYRIFL 214 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGle---kAvpK~ILe~M~V--~GLT~~tVaSHLQKyRl~l 214 (534)
.-...|+.|+.+++..+... ....++|++.+.. -+++..+|+.|+.+.|..|
T Consensus 178 -~~~~~LT~rE~evL~ll~~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL 234 (249)
T 3q9s_A 178 -GEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKL 234 (249)
T ss_dssp -TEEECCCHHHHHHHHHHHHSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHH
T ss_pred -CEEeecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHh
Confidence 00124899999999999433 2447889985332 2267899999998887744
No 8
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.64 E-value=3e-15 Score=141.71 Aligned_cols=169 Identities=17% Similarity=0.222 Sum_probs=125.3
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++..+++|||++|+..+.....++++.||++||.||++.++
T Consensus 31 ~~~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~ 109 (225)
T 1kgs_A 31 VCYDGEEGMYMALN-EPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRE 109 (225)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHH
T ss_pred EECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHH
Confidence 46789999999987 78999999999999999999999999889999999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccCCCCCC
Q 043479 82 LKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKKPK 161 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss~kKpr 161 (534)
|..+|+.++++.......... ..++. ... ..+ . . . .. .
T Consensus 110 l~~~i~~~~~~~~~~~~~~~~---------------~~~~~----~~~------~~~-~---~---~--~~-------~- 147 (225)
T 1kgs_A 110 LIARVRALIRRKSESKSTKLV---------------CGDLI----LDT------ATK-K---A---Y--RG-------S- 147 (225)
T ss_dssp HHHHHHHHHHHHCCSCSSEEE---------------ETTEE----EET------TTT-E---E---E--ET-------T-
T ss_pred HHHHHHHHHhhcccccCceEE---------------ECCEE----Eec------ccC-E---E---E--EC-------C-
Confidence 999999998775432110000 00000 000 000 0 0 0 00 0
Q ss_pred ccCCchhhHHHHHHHHHhccC---CCcHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLE---KAVPKKILEFMNV--PGLTRENVASHLQKYRIFLK 215 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGle---kAvpK~ILe~M~V--~GLT~~tVaSHLQKyRl~lk 215 (534)
....|+.++.+++..+... ....++|++.+.- ..++..+|+.|+.+.|..+.
T Consensus 148 --~~~~Lt~rE~~vL~~l~~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~ 204 (225)
T 1kgs_A 148 --KEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVD 204 (225)
T ss_dssp --EEECCCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHH
T ss_pred --EEEecCHHHHHHHHHHHhCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhh
Confidence 0124889999999988432 1457899999862 23789999999998887553
No 9
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.63 E-value=3.9e-16 Score=149.56 Aligned_cols=159 Identities=17% Similarity=0.242 Sum_probs=125.4
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.+.. ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++
T Consensus 32 ~~~~~~~al~~l~~-~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~ 110 (225)
T 3c3w_A 32 EAGSVAEAMARVPA-ARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGME 110 (225)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred EECCHHHHHHHHhh-cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHH
Confidence 47899999999987 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccCCCCCC
Q 043479 82 LKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKKPK 161 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss~kKpr 161 (534)
|..+|+.++++......... ...+.... . .. . .. .
T Consensus 111 L~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~-----------~-~~------~---~~-----~-- 145 (225)
T 3c3w_A 111 LARAVKDVGAGRSLLDNRAA-----------------AALMAKLR-----------G-AA------E---KQ-----D-- 145 (225)
T ss_dssp HHHHHHHHHHHGGGSCHHHH-----------------HHHHHHHH-----------H-HH------H---HS-----C--
T ss_pred HHHHHHHHHcCCeeeCHHHH-----------------HHHHHhcc-----------c-cc------c---cc-----c--
Confidence 99999999987553321100 00000000 0 00 0 00 0
Q ss_pred ccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl 212 (534)
....|+.++.+++..+... ...++|++.++ ++..||+.|+.+.|.
T Consensus 146 --~~~~LT~rE~~vL~~l~~g-~s~~eIa~~l~---is~~TV~~hi~~l~~ 190 (225)
T 3c3w_A 146 --PLSGLTDQERTLLGLLSEG-LTNKQIADRMF---LAEKTVKNYVSRLLA 190 (225)
T ss_dssp --TTTTSCHHHHHHHHHHHTT-CCHHHHHHHHT---CCHHHHHHHHHHHHH
T ss_pred --ccCCCCHHHHHHHHHHHCC-CCHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 1134899999999999644 45899999997 899999999987765
No 10
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.63 E-value=2e-16 Score=151.07 Aligned_cols=159 Identities=11% Similarity=0.024 Sum_probs=119.1
Q ss_pred cCHHHHHH-HHHhcCCceEEEEeCCCCCCCHHHHHHHHHh-hCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 4 TRPVEALA-TVRIQRDIDLVVTDLHMPEMNGIELQKEINE-EFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 4 ss~~EALe-~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~-~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+..+++. .+.. ..|||||+|+.||+++|++++++|++ ..+++|||++|+..+......+++.||++||.||+++++
T Consensus 40 ~~~~~~~~~~~~~-~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~ 118 (225)
T 3klo_A 40 FSELWLEENKPES-RSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDT 118 (225)
T ss_dssp GGGHHHHTTCSGG-GGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHH
T ss_pred CCcHHHHHHHhhc-cCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHH
Confidence 34455554 3554 67999999999999999999999999 799999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccCCCCCC
Q 043479 82 LKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKKPK 161 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss~kKpr 161 (534)
|..+|++++++......... ...+..... .. . .. .
T Consensus 119 L~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~-~~---------------------~---~~---~ 153 (225)
T 3klo_A 119 LIKGMSKILQDEMWLTRKLA-----------------QEYILHYRA-GN---------------------S---VV---T 153 (225)
T ss_dssp HHHHHHHHHTTCCBCCHHHH-----------------HHHHHHHHT-TC---------------------C---CC---C
T ss_pred HHHHHHHHHCCCEeeCHHHH-----------------HHHHHHhhc-cc---------------------c---cc---c
Confidence 99999999876543221100 000000000 00 0 00 0
Q ss_pred ccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl 212 (534)
-.....|+.++.+++..+..+ ...++|++.++ ++..||+.|+.+.|.
T Consensus 154 ~~~~~~Lt~rE~~vL~~l~~g-~s~~~Ia~~l~---~s~~Tv~~~i~~l~~ 200 (225)
T 3klo_A 154 SQMYAKLTKREQQIIKLLGSG-ASNIEIADKLF---VSENTVKTHLHNVFK 200 (225)
T ss_dssp CHHHHTSCHHHHHHHHHHTTT-CCHHHHHHHTT---CCHHHHHHHHHHHTT
T ss_pred ccccccCCHHHHHHHHHHHcC-CCHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 011235899999999999754 45899999998 899999999988765
No 11
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.59 E-value=1.4e-14 Score=137.08 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=122.3
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.+ ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++
T Consensus 30 ~~~~~~~al~~~---~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~ 106 (220)
T 1p2f_A 30 TFLTGEDFLNDE---EAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEI 106 (220)
T ss_dssp EESSHHHHHHCC---SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHH
T ss_pred EECCHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHH
Confidence 467889998877 36999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccCCCCCC
Q 043479 82 LKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKKPK 161 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss~kKpr 161 (534)
|..+|++++++.. ..... ..++. ... ..+ . ... . .
T Consensus 107 L~~~i~~~~~~~~--~~~~~----------------~~~~~----~~~------~~~-~-----~~~---~-------~- 141 (220)
T 1p2f_A 107 LLARVKRFLEREK--KGLYD----------------FGDLK----IDA------TGF-T-----VFL---K-------G- 141 (220)
T ss_dssp HHHHHHHHHHHCC--CSEEE----------------ETTEE----EET------TTT-E-----EEE---T-------T-
T ss_pred HHHHHHHHHcccc--ccCcc----------------cccEE----EEC------CCC-E-----EEE---C-------C-
Confidence 9999999987643 10000 00000 000 000 0 000 0 0
Q ss_pred ccCCchhhHHHHHHHHHhccC---CCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLE---KAVPKKILEFMNVPGLTRENVASHLQKYRIFL 214 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGle---kAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~l 214 (534)
....|+.++.++++.+... ....++|++.+.-..++..+|+.|+.+.|..+
T Consensus 142 --~~~~Lt~rE~~vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl 195 (220)
T 1p2f_A 142 --KRIHLPKKEFEILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAI 195 (220)
T ss_dssp --EECCCCHHHHHHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHH
T ss_pred --EEEecCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 0124889999999998533 25689999998633378999999999888754
No 12
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.59 E-value=8.5e-15 Score=139.31 Aligned_cols=172 Identities=17% Similarity=0.240 Sum_probs=124.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++
T Consensus 36 ~~~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~ 114 (233)
T 1ys7_A 36 TAVDGAEALRSATE-NRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAE 114 (233)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHH
Confidence 57789999999987 78999999999999999999999999888999999999998888889999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccCCCCCC
Q 043479 82 LKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKKPK 161 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss~kKpr 161 (534)
|..+|++++++.......... ......+ ... ...+ . . . ..
T Consensus 115 L~~~i~~~~~~~~~~~~~~~~------------~~~~~~~----~~~------~~~~-~---~---~--~~--------- 154 (233)
T 1ys7_A 115 LVARVKALLRRRGSTATSSSE------------TITVGPL----EVD------IPGR-R---A---R--VN--------- 154 (233)
T ss_dssp HHHHHHHHHHHHHCCCCCCCC------------EEEETTE----EEE------TTTT-E---E---E--ET---------
T ss_pred HHHHHHHHHhhccccccccCc------------ccccCCe----EEc------cCcc-E---E---E--EC---------
Confidence 999999998775432110000 0000000 000 0000 0 0 0 00
Q ss_pred ccCCchhhHHHHHHHHHhccC--C-CcHHHHHHHcCCC--CCCHHHHHHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLE--K-AVPKKILEFMNVP--GLTRENVASHLQKYRIFLK 215 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGle--k-AvpK~ILe~M~V~--GLT~~tVaSHLQKyRl~lk 215 (534)
.....|+.++.+++..+... + ...++|++.+.-. .++..+|+.|+.+.|..+.
T Consensus 155 -~~~~~Lt~rE~~vL~~l~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~ 212 (233)
T 1ys7_A 155 -GVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLE 212 (233)
T ss_dssp -TEECCCCHHHHHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHH
T ss_pred -CEEeccCHHHHHHHHHHHhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhc
Confidence 00124899999999998433 2 4578999988522 2678999999998887554
No 13
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.58 E-value=1.3e-14 Score=138.04 Aligned_cols=171 Identities=17% Similarity=0.232 Sum_probs=122.5
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++. +.+|||++|+..+.....++++.||++||.||++.++
T Consensus 33 ~~~~~~~al~~~~~-~~~dlvllD~~l~~~~g~~~~~~l~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~ 110 (230)
T 2oqr_A 33 VVTDGPAALAEFDR-AGADIVLLDLMLPGMSGTDVCKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARE 110 (230)
T ss_dssp EECSHHHHHHHHHH-HCCSEEEEESSCSSSCHHHHHHHHHHH-CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHH
T ss_pred EECCHHHHHHHHhc-cCCCEEEEECCCCCCCHHHHHHHHHcC-CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHH
Confidence 46789999999987 679999999999999999999999986 7899999999998888999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccCCCCCC
Q 043479 82 LKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKKPK 161 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss~kKpr 161 (534)
|..+|++++++.......... .......+ .. ... ...... ..
T Consensus 111 l~~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~----------~~--~~~---------~~~~~~-----~~- 152 (230)
T 2oqr_A 111 LIARIRAVLRRGGDDDSEMSD-----------GVLESGPV----------RM--DVE---------RHVVSV-----NG- 152 (230)
T ss_dssp HHHHHHHHHTTTTCTTSTTCC-----------SCEEETTE----------EE--ETT---------TTEEEE-----SS-
T ss_pred HHHHHHHHHhhcccccccccc-----------cceeecCE----------EE--ecc---------ccEEEE-----CC-
Confidence 999999998664211100000 00000000 00 000 000000 00
Q ss_pred ccCCchhhHHHHHHHHHhccC---CCcHHHHHHHcCC--CCCCHHHHHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLE---KAVPKKILEFMNV--PGLTRENVASHLQKYRIFL 214 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGle---kAvpK~ILe~M~V--~GLT~~tVaSHLQKyRl~l 214 (534)
....|+.++.++++.+... ....++|++.+-- .+++..+|+.|+.+.|..+
T Consensus 153 --~~~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl 208 (230)
T 2oqr_A 153 --DTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKI 208 (230)
T ss_dssp --BCCCCCHHHHHHHHHHHHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHH
T ss_pred --eeeecCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHH
Confidence 0134899999999998533 2557899998811 1378999999998887744
No 14
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.57 E-value=1.4e-14 Score=124.94 Aligned_cols=89 Identities=24% Similarity=0.369 Sum_probs=82.6
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
++.++.+|++.++. ..||+||+|+.||+++|++++++|++. .+.+|||++|+..+.....++++.||++||.||++.
T Consensus 31 ~~~~~~~al~~l~~-~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~ 109 (122)
T 3gl9_A 31 EAENGQIALEKLSE-FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSP 109 (122)
T ss_dssp EESSHHHHHHHHTT-BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCH
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCH
Confidence 57899999999987 789999999999999999999999875 467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 043479 80 DDLKNVWQYAMT 91 (534)
Q Consensus 80 eeL~~aI~~aL~ 91 (534)
++|..+|+++++
T Consensus 110 ~~L~~~i~~~l~ 121 (122)
T 3gl9_A 110 SQFIEEVKHLLN 121 (122)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999998863
No 15
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.57 E-value=1.3e-14 Score=139.60 Aligned_cols=167 Identities=21% Similarity=0.313 Sum_probs=120.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++.. .+|||++|+..+.....++++.||++||.||++.++
T Consensus 34 ~~~~~~~al~~l~~-~~~dlvilD~~l~~~~g~~~~~~lr~~~-~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~ 111 (238)
T 2gwr_A 34 VIGDGTQALTAVRE-LRPDLVLLDLMLPGMNGIDVCRVLRADS-GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111 (238)
T ss_dssp EECCGGGHHHHHHH-HCCSEEEEESSCSSSCHHHHHHHHHTTC-CCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhCC-CCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHH
Confidence 46789999999987 6899999999999999999999999864 799999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccCCCCCC
Q 043479 82 LKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKKPK 161 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss~kKpr 161 (534)
|..+|+.++++........ ....++ .... ..+ . ... ..
T Consensus 112 L~~~i~~~~~~~~~~~~~~---------------~~~~~~----~~~~------~~~-~----------~~~-----~~- 149 (238)
T 2gwr_A 112 LVARVRARLRRNDDEPAEM---------------LSIADV----EIDV------PAH-K----------VTR-----NG- 149 (238)
T ss_dssp HHHHHHHHCCCCSSCCCCE---------------EEETTE----EEET------TTT-E----------EEE-----TT-
T ss_pred HHHHHHHHHhhcccCcccc---------------eecCce----EEcc------ccc-E----------EEE-----CC-
Confidence 9999999875532210000 000000 0000 000 0 000 00
Q ss_pred ccCCchhhHHHHHHHHHhccC---CCcHHHHHHHcC-C-CCCCHHHHHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLE---KAVPKKILEFMN-V-PGLTRENVASHLQKYRIFL 214 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGle---kAvpK~ILe~M~-V-~GLT~~tVaSHLQKyRl~l 214 (534)
....|+.++.+++..+... ....++|++.+- . .+++..+|+.|+.+.|..+
T Consensus 150 --~~~~LT~rE~~vL~~l~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL 205 (238)
T 2gwr_A 150 --EQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKV 205 (238)
T ss_dssp --EEECCCHHHHHHHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHH
T ss_pred --EEcccCHHHHHHHHHHHHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHh
Confidence 0134899999999998533 255889999881 1 1378999999999888754
No 16
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.56 E-value=3.3e-14 Score=124.90 Aligned_cols=93 Identities=19% Similarity=0.365 Sum_probs=84.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
++.++.+|++.+.. ..||+||+|+.||+++|++++++|++. .+.+|||++|+..+.....++++.||++||.||++.
T Consensus 33 ~~~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~ 111 (136)
T 3t6k_A 33 RAASGEEALQQIYK-NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEP 111 (136)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCH
T ss_pred EeCCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCH
Confidence 57899999999987 789999999999999999999999874 567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 043479 80 DDLKNVWQYAMTYKKA 95 (534)
Q Consensus 80 eeL~~aI~~aL~~k~~ 95 (534)
++|..+|++++++...
T Consensus 112 ~~L~~~i~~~l~~~~~ 127 (136)
T 3t6k_A 112 QELVYRVKNILARTTI 127 (136)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhccCC
Confidence 9999999999876543
No 17
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.54 E-value=2.8e-14 Score=122.44 Aligned_cols=89 Identities=21% Similarity=0.421 Sum_probs=82.3
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.++. ..||+||+|+.||+++|++++++|++.. .+|||++|+..+.....++++.||++||.||++.++
T Consensus 31 ~~~~~~~al~~~~~-~~~dlii~D~~~p~~~g~~~~~~lr~~~-~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~ 108 (120)
T 3f6p_A 31 CAHDGNEAVEMVEE-LQPDLILLDIMLPNKDGVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRE 108 (120)
T ss_dssp EESSHHHHHHHHHT-TCCSEEEEETTSTTTHHHHHHHHHHTTC-CSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHH
T ss_pred EeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHH
Confidence 47799999999987 7899999999999999999999999754 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 043479 82 LKNVWQYAMTY 92 (534)
Q Consensus 82 L~~aI~~aL~~ 92 (534)
|..+|++++++
T Consensus 109 l~~~i~~~l~~ 119 (120)
T 3f6p_A 109 LLARVKANLRR 119 (120)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999988753
No 18
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.54 E-value=3.9e-14 Score=123.49 Aligned_cols=93 Identities=22% Similarity=0.369 Sum_probs=84.0
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.++. ..||+||+|+.||+++|++++++|++..+.+|||++|+..+.....++++.||++||.||++.++
T Consensus 34 ~~~~~~~al~~~~~-~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~ 112 (133)
T 3b2n_A 34 DTDNGLDAMKLIEE-YNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEE 112 (133)
T ss_dssp EESCHHHHHHHHHH-HCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHH
T ss_pred EcCCHHHHHHHHhh-cCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHH
Confidence 46789999999987 67999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 043479 82 LKNVWQYAMTYKKA 95 (534)
Q Consensus 82 L~~aI~~aL~~k~~ 95 (534)
|..+|+++++++..
T Consensus 113 L~~~i~~~~~~~~~ 126 (133)
T 3b2n_A 113 LVETINKVNNGEKE 126 (133)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHHcCCCc
Confidence 99999999866543
No 19
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.53 E-value=6.6e-14 Score=121.82 Aligned_cols=94 Identities=20% Similarity=0.330 Sum_probs=87.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.++++.+.. ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++
T Consensus 32 ~~~~~~~al~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~ 110 (132)
T 3crn_A 32 IAATAGEGLAKIEN-EFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRD 110 (132)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHH
Confidence 46789999999987 78999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 043479 82 LKNVWQYAMTYKKAK 96 (534)
Q Consensus 82 L~~aI~~aL~~k~~~ 96 (534)
|..+|++++++....
T Consensus 111 L~~~i~~~~~~~~~~ 125 (132)
T 3crn_A 111 LLEKIKEKLDEQEKE 125 (132)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCC
Confidence 999999998776543
No 20
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.53 E-value=1.1e-13 Score=117.35 Aligned_cols=91 Identities=20% Similarity=0.321 Sum_probs=84.7
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.+++..+.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 29 ~~~~~~~a~~~~~~-~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~ 107 (121)
T 2pl1_A 29 DAEDAKEADYYLNE-HIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEE 107 (121)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHH
T ss_pred EeCCHHHHHHHHhc-cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHH
Confidence 46789999999987 78999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 043479 82 LKNVWQYAMTYK 93 (534)
Q Consensus 82 L~~aI~~aL~~k 93 (534)
|..+|++++++.
T Consensus 108 l~~~i~~~~~~~ 119 (121)
T 2pl1_A 108 VMARMQALMRRN 119 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988653
No 21
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.53 E-value=8.4e-14 Score=119.72 Aligned_cols=90 Identities=22% Similarity=0.340 Sum_probs=83.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.++++.+.. ..||+||+|+.||+++|++++++|++..+.+|||++|+..+.....++++.||++||.||++.++
T Consensus 32 ~~~~~~~~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~ 110 (126)
T 1dbw_A 32 MHQSAEAFLAFAPD-VRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTV 110 (126)
T ss_dssp EESCHHHHHHHGGG-CCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHH
Confidence 46789999999887 78999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 043479 82 LKNVWQYAMTY 92 (534)
Q Consensus 82 L~~aI~~aL~~ 92 (534)
|..+|++++++
T Consensus 111 l~~~i~~~~~~ 121 (126)
T 1dbw_A 111 IIEAIERASEH 121 (126)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 22
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.53 E-value=6e-14 Score=121.63 Aligned_cols=90 Identities=30% Similarity=0.626 Sum_probs=81.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.++.++++.+.....||+||+|+.||+++|++++++|++. .+.+|||++|+..+.....++++.||++||.||++.
T Consensus 35 ~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~ 114 (129)
T 3h1g_A 35 EAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTP 114 (129)
T ss_dssp EESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCH
T ss_pred EeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCH
Confidence 467899999988763479999999999999999999999973 478999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 043479 80 DDLKNVWQYAMT 91 (534)
Q Consensus 80 eeL~~aI~~aL~ 91 (534)
++|..+|+.++.
T Consensus 115 ~~L~~~l~~~l~ 126 (129)
T 3h1g_A 115 QVLKEKLEVVLG 126 (129)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999874
No 23
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.52 E-value=6.1e-14 Score=124.67 Aligned_cols=94 Identities=23% Similarity=0.341 Sum_probs=87.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.+.. ..|||||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++
T Consensus 51 ~~~~~~~al~~l~~-~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~ 129 (150)
T 4e7p_A 51 QAKNGQEAIQLLEK-ESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIAD 129 (150)
T ss_dssp EESSHHHHHHHHTT-SCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHH
T ss_pred EECCHHHHHHHhhc-cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHH
Confidence 47799999999987 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 043479 82 LKNVWQYAMTYKKAK 96 (534)
Q Consensus 82 L~~aI~~aL~~k~~~ 96 (534)
|..+|+++++++...
T Consensus 130 l~~~i~~~~~~~~~~ 144 (150)
T 4e7p_A 130 LMQTLHTVLEGRKEY 144 (150)
T ss_dssp HHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcCCEEc
Confidence 999999999776543
No 24
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.51 E-value=8.2e-14 Score=121.86 Aligned_cols=91 Identities=21% Similarity=0.342 Sum_probs=81.5
Q ss_pred eecCHHHHHHHHHh----cCCceEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 043479 2 TVTRPVEALATVRI----QRDIDLVVTDLHMPEMNGIELQKEINEE-FTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76 (534)
Q Consensus 2 tass~~EALe~L~~----~~~pDLVLLDi~mPdmdGleLL~~Lr~~-~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP 76 (534)
++.++.+|++.++. ...||+||+|+.||+++|+++++.|++. .+.+|||++|+..+.....++++.||++||.||
T Consensus 32 ~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP 111 (133)
T 2r25_B 32 LACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKP 111 (133)
T ss_dssp EESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESS
T ss_pred EECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCC
Confidence 46789999998864 1469999999999999999999999974 567899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHH
Q 043479 77 LNPDDLKNVWQYAMTY 92 (534)
Q Consensus 77 ~s~eeL~~aI~~aL~~ 92 (534)
++.++|..+|++++..
T Consensus 112 ~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 112 IKRPKLKTILTEFCAA 127 (133)
T ss_dssp CCHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988643
No 25
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.51 E-value=1.5e-13 Score=120.41 Aligned_cols=96 Identities=26% Similarity=0.442 Sum_probs=88.4
Q ss_pred eecCHHHHHHHHHh-cCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChH
Q 043479 2 TVTRPVEALATVRI-QRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80 (534)
Q Consensus 2 tass~~EALe~L~~-~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~e 80 (534)
++.+..+|++.+.. ...||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.+
T Consensus 32 ~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~ 111 (143)
T 3jte_A 32 TASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQ 111 (143)
T ss_dssp EESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred EeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHH
Confidence 57789999999983 16899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcc
Q 043479 81 DLKNVWQYAMTYKKAKS 97 (534)
Q Consensus 81 eL~~aI~~aL~~k~~~s 97 (534)
+|..+|++++++++...
T Consensus 112 ~l~~~l~~~~~~~~~~~ 128 (143)
T 3jte_A 112 DLSIAINNAINRKKLLM 128 (143)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998776543
No 26
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.50 E-value=1.3e-13 Score=122.90 Aligned_cols=94 Identities=23% Similarity=0.453 Sum_probs=88.0
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcC-CcEEEeCCCChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASG-VAFYILKPLNPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aG-A~dyL~KP~s~e 80 (534)
++.++.+|++.+.. ..|||||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.| |++||.||++.+
T Consensus 43 ~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~ 121 (153)
T 3hv2_A 43 FARDATQALQLLAS-REVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQ 121 (153)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHH
T ss_pred EECCHHHHHHHHHc-CCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHH
Confidence 57799999999987 7899999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 043479 81 DLKNVWQYAMTYKKAK 96 (534)
Q Consensus 81 eL~~aI~~aL~~k~~~ 96 (534)
+|..+|++++++....
T Consensus 122 ~l~~~i~~~l~~~~~~ 137 (153)
T 3hv2_A 122 ELLLALRQALEHQHSE 137 (153)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 9999999999876543
No 27
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.50 E-value=1.2e-13 Score=122.86 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=86.7
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.++. ..|||||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++
T Consensus 46 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~ 124 (152)
T 3eul_A 46 EADDGAAALELIKA-HLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTE 124 (152)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHH
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHH
Confidence 47899999999987 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 043479 82 LKNVWQYAMTYKKAKS 97 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s 97 (534)
|..+|+++++++...+
T Consensus 125 l~~~i~~~~~~~~~~~ 140 (152)
T 3eul_A 125 IVKAVLDCAKGRDVVA 140 (152)
T ss_dssp HHHHHHHHHHCC----
T ss_pred HHHHHHHHHcCCeeeC
Confidence 9999999998766554
No 28
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.50 E-value=7.5e-14 Score=119.45 Aligned_cols=89 Identities=22% Similarity=0.375 Sum_probs=83.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.++. ..||+||+|+.||+++|+++++.+++..+.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 32 ~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~ 110 (124)
T 1srr_A 32 QAANGLQALDIVTK-ERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDE 110 (124)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHH
T ss_pred EeCCHHHHHHHHhc-cCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHH
Confidence 46789999999987 68999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 043479 82 LKNVWQYAMT 91 (534)
Q Consensus 82 L~~aI~~aL~ 91 (534)
|..+|+++++
T Consensus 111 l~~~i~~~~~ 120 (124)
T 1srr_A 111 IRDAVKKYLP 120 (124)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 29
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.50 E-value=7.9e-14 Score=121.36 Aligned_cols=95 Identities=24% Similarity=0.372 Sum_probs=88.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.++. ..|||||+|+.||+++|+++++.|++..+.+|||++|+..+.+...++++.||++||.||++.++
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~ 114 (137)
T 3hdg_A 36 SAGDGEEGERLFGL-HAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGR 114 (137)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHH
T ss_pred EECCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHH
Confidence 57799999999987 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 043479 82 LKNVWQYAMTYKKAKS 97 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s 97 (534)
|..+|+++++++....
T Consensus 115 l~~~i~~~~~~~~~~~ 130 (137)
T 3hdg_A 115 LMETLEDFRHIKLAKE 130 (137)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999998876543
No 30
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.50 E-value=3.8e-14 Score=122.64 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=85.5
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++++|++.+.. ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 31 ~~~~~~~a~~~~~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~ 109 (134)
T 3f6c_A 31 ELTEGGSAVQRVET-LKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNN 109 (134)
T ss_dssp EESSSTTHHHHHHH-HCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHH
T ss_pred EcCCHHHHHHHHHh-cCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHH
Confidence 46788999999987 78999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 043479 82 LKNVWQYAMTYKKAKS 97 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s 97 (534)
|..+|+++++++...+
T Consensus 110 l~~~i~~~~~~~~~~~ 125 (134)
T 3f6c_A 110 IIAAIEAAKNGYCYFP 125 (134)
T ss_dssp HHHHHHHHHTTCCBCC
T ss_pred HHHHHHHHHCCCEEeC
Confidence 9999999998776554
No 31
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.50 E-value=1e-13 Score=117.63 Aligned_cols=88 Identities=27% Similarity=0.433 Sum_probs=82.3
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++++++..+.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 32 ~~~~~~~a~~~~~~-~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~ 110 (120)
T 1tmy_A 32 EATNGREAVEKYKE-LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSR 110 (120)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHH
T ss_pred EECCHHHHHHHHHh-cCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHH
Confidence 46789999999987 68999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 043479 82 LKNVWQYAM 90 (534)
Q Consensus 82 L~~aI~~aL 90 (534)
|..+|++++
T Consensus 111 l~~~i~~~~ 119 (120)
T 1tmy_A 111 VVEALNKVS 119 (120)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999998764
No 32
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.49 E-value=1.5e-13 Score=120.71 Aligned_cols=92 Identities=21% Similarity=0.358 Sum_probs=85.6
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++
T Consensus 33 ~~~~~~~a~~~l~~-~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~ 111 (137)
T 3cfy_A 33 HVETGRDAIQFIER-SKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADR 111 (137)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHH
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHH
Confidence 46789999999987 68999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 043479 82 LKNVWQYAMTYKK 94 (534)
Q Consensus 82 L~~aI~~aL~~k~ 94 (534)
|..+|++++++..
T Consensus 112 L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 112 LKTSVALHLKRAK 124 (137)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 33
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.49 E-value=9.3e-14 Score=119.83 Aligned_cols=91 Identities=30% Similarity=0.412 Sum_probs=77.7
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-ChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL-NPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~-s~e 80 (534)
.+.++.+|++.++. .+||+||+|+.+|+++|+++++.|++..+.+|||++|+..+.....++++.|+++||.||+ +.+
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~ 114 (130)
T 3eod_A 36 LAADGVDALELLGG-FTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLN 114 (130)
T ss_dssp EESCHHHHHHHHTT-CCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---C
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHH
Confidence 46799999999987 7899999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHh
Q 043479 81 DLKNVWQYAMTYK 93 (534)
Q Consensus 81 eL~~aI~~aL~~k 93 (534)
+|..+|++++.++
T Consensus 115 ~l~~~i~~~l~~~ 127 (130)
T 3eod_A 115 RLREMVFACLYPS 127 (130)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHhchh
Confidence 9999999998654
No 34
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.49 E-value=5e-14 Score=123.25 Aligned_cols=94 Identities=21% Similarity=0.230 Sum_probs=86.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCC--CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPE--MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPd--mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
++.++.+|++.++. ..||+||+|+.||+ ++|++++++|++..+.+|||++|+..+.....++++.||++||.||++.
T Consensus 35 ~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~ 113 (136)
T 3kto_A 35 CFASAESFMRQQIS-DDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIE 113 (136)
T ss_dssp EESSHHHHTTSCCC-TTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCH
T ss_pred EeCCHHHHHHHHhc-cCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCH
Confidence 57789999999876 78999999999999 9999999999999899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 043479 80 DDLKNVWQYAMTYKKAK 96 (534)
Q Consensus 80 eeL~~aI~~aL~~k~~~ 96 (534)
++|..+|++++.+....
T Consensus 114 ~~l~~~i~~~~~~~~~~ 130 (136)
T 3kto_A 114 HVLVHDVQQIINGAKEG 130 (136)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhccCCC
Confidence 99999999999876543
No 35
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.49 E-value=2e-13 Score=119.99 Aligned_cols=93 Identities=20% Similarity=0.331 Sum_probs=86.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHh--hCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-C
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL-N 78 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~--~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~-s 78 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++ ..+.+|||++|+..+.....++++.||++||.||+ +
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~ 114 (144)
T 3kht_A 36 FVDNGAKALYQVQQ-AKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNN 114 (144)
T ss_dssp EESSHHHHHHHHTT-CCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTS
T ss_pred EECCHHHHHHHhhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence 46799999999987 78999999999999999999999998 67889999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHhhh
Q 043479 79 PDDLKNVWQYAMTYKKA 95 (534)
Q Consensus 79 ~eeL~~aI~~aL~~k~~ 95 (534)
.++|..+|+++++++..
T Consensus 115 ~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 115 VTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 36
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.49 E-value=3.5e-13 Score=114.72 Aligned_cols=89 Identities=17% Similarity=0.307 Sum_probs=82.5
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.++++.+.. ..||+||+|+.||+++|+++++.+++ .+.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 31 ~~~~~~~~~~~~~~-~~~dlvi~d~~l~~~~g~~~~~~l~~-~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~ 108 (122)
T 1zgz_A 31 VTASGAGLREIMQN-QSVDLILLDINLPDENGLMLTRALRE-RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRE 108 (122)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHT-TCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHH
T ss_pred EecCHHHHHHHHhc-CCCCEEEEeCCCCCCChHHHHHHHHh-cCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHH
Confidence 46788999999887 78999999999999999999999998 67899999999999998999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 043479 82 LKNVWQYAMTY 92 (534)
Q Consensus 82 L~~aI~~aL~~ 92 (534)
|..+|++++++
T Consensus 109 l~~~i~~~~~~ 119 (122)
T 1zgz_A 109 LVVRVKNLLWR 119 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 37
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.48 E-value=3.5e-13 Score=115.62 Aligned_cols=90 Identities=26% Similarity=0.506 Sum_probs=82.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHh--hCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~--~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.++.++++.+.. ..||+||+|+.||+++|+++++.|++ ..+.+|||++|+..+.....++++.|+++||.||++.
T Consensus 34 ~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~ 112 (128)
T 1jbe_A 34 EAEDGVDALNKLQA-GGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTA 112 (128)
T ss_dssp EESSHHHHHHHHTT-CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCH
T ss_pred eeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCH
Confidence 46789999999976 78999999999999999999999997 4577999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 043479 80 DDLKNVWQYAMTY 92 (534)
Q Consensus 80 eeL~~aI~~aL~~ 92 (534)
++|..+|+++++.
T Consensus 113 ~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 113 ATLEEKLNKIFEK 125 (128)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 38
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.48 E-value=3.8e-13 Score=114.60 Aligned_cols=89 Identities=28% Similarity=0.454 Sum_probs=82.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.++++.+.. ..||+||+|+.||+++|+++++.|++. +.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 32 ~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~-~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~ 109 (123)
T 1xhf_A 32 EATDGAEMHQILSE-YDINLVIMDINLPGKNGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRE 109 (123)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEECSSCSSSCHHHHHHHHHHH-CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHhC-CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHH
Confidence 46789999999987 789999999999999999999999987 7899999999999988999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 043479 82 LKNVWQYAMTY 92 (534)
Q Consensus 82 L~~aI~~aL~~ 92 (534)
|..+|++++++
T Consensus 110 l~~~i~~~~~~ 120 (123)
T 1xhf_A 110 LTIRARNLLSR 120 (123)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 39
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.48 E-value=1.7e-13 Score=118.47 Aligned_cols=91 Identities=21% Similarity=0.391 Sum_probs=83.4
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE-FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~-~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~e 80 (534)
++.++.+|++.+.. ..||+||+|+.||+++|++++++|++. .+.+|||++|+..+.....++++.||++||.||++.+
T Consensus 33 ~~~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~ 111 (130)
T 1dz3_A 33 TAYNGQDCLQMLEE-KRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDME 111 (130)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCT
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 46799999999987 679999999999999999999999986 5778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 043479 81 DLKNVWQYAMTYK 93 (534)
Q Consensus 81 eL~~aI~~aL~~k 93 (534)
+|..+|++++++.
T Consensus 112 ~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 112 NLAHHIRQVYGKT 124 (130)
T ss_dssp THHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987543
No 40
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.48 E-value=3.3e-13 Score=120.88 Aligned_cols=93 Identities=23% Similarity=0.358 Sum_probs=86.0
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
++.++.+|++.+.. ..||+||+|+.||+++|+++++.|++. .+.+|||++|+..+.....++++.||++||.||++.
T Consensus 36 ~~~~~~~al~~l~~-~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~ 114 (154)
T 3gt7_A 36 HVRNGREAVRFLSL-TRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKD 114 (154)
T ss_dssp EESSHHHHHHHHTT-CCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCH
T ss_pred EeCCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCH
Confidence 57799999999987 789999999999999999999999985 378999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 043479 80 DDLKNVWQYAMTYKKA 95 (534)
Q Consensus 80 eeL~~aI~~aL~~k~~ 95 (534)
++|..+|++++++.+.
T Consensus 115 ~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 115 VVLASHVKRLLSGVKR 130 (154)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999977543
No 41
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.47 E-value=5e-13 Score=118.76 Aligned_cols=95 Identities=25% Similarity=0.416 Sum_probs=86.2
Q ss_pred eecCHHHHHHHHH--------hcCCceEEEEeCCCCCCCHHHHHHHHHh--hCCCCcEEEEecCCCHHHHHHHHHcCCcE
Q 043479 2 TVTRPVEALATVR--------IQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKALASGVAF 71 (534)
Q Consensus 2 tass~~EALe~L~--------~~~~pDLVLLDi~mPdmdGleLL~~Lr~--~~p~ipVIVLSs~~d~~~~~~AL~aGA~d 71 (534)
.+.++.+|++.++ ....|||||+|+.||+++|+++++.|++ ..+.+|||++|+..+.....++++.|+++
T Consensus 35 ~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~ 114 (152)
T 3heb_A 35 AFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANV 114 (152)
T ss_dssp EESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred EeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcE
Confidence 4679999999995 2267999999999999999999999998 67889999999999999999999999999
Q ss_pred EEeCCCChHHHHHHHHHHHHHhhhc
Q 043479 72 YILKPLNPDDLKNVWQYAMTYKKAK 96 (534)
Q Consensus 72 yL~KP~s~eeL~~aI~~aL~~k~~~ 96 (534)
||.||++.++|..+|+++.+.+...
T Consensus 115 ~l~KP~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3heb_A 115 YITKPVNYENFANAIRQLGLFFSVM 139 (152)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHTTS
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999997766543
No 42
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.47 E-value=2.7e-13 Score=120.20 Aligned_cols=90 Identities=27% Similarity=0.412 Sum_probs=81.0
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh----CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE----FTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~----~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~ 77 (534)
++.++++|++.+.. ..||+||+|+.||+++|++++++|++. .+.+|||++|+..+.+...++++.||++||.||+
T Consensus 43 ~~~~~~~al~~~~~-~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~ 121 (143)
T 3m6m_D 43 CVNGAEQVLDAMAE-EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 121 (143)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSC
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCC
Confidence 46789999999987 789999999999999999999999853 4568999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHH
Q 043479 78 NPDDLKNVWQYAMTY 92 (534)
Q Consensus 78 s~eeL~~aI~~aL~~ 92 (534)
+.++|..+|+++...
T Consensus 122 ~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 122 VAAKLLDTLADLAVS 136 (143)
T ss_dssp CHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987644
No 43
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.47 E-value=3.3e-13 Score=113.97 Aligned_cols=89 Identities=26% Similarity=0.452 Sum_probs=81.7
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.++++.+.. ..||+||+|+.||+++|+++++++++. +.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 30 ~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~-~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~ 107 (120)
T 2a9o_A 30 TAFNGREALEQFEA-EQPDIIILDLMLPEIDGLEVAKTIRKT-SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRE 107 (120)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEECSSCSSSCHHHHHHHHHHH-CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHH
T ss_pred EecCHHHHHHHHHh-CCCCEEEEeccCCCCCHHHHHHHHHhC-CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHH
Confidence 46789999999887 689999999999999999999999974 6799999999999888899999999999999999999
Q ss_pred HHHHHHHHHHH
Q 043479 82 LKNVWQYAMTY 92 (534)
Q Consensus 82 L~~aI~~aL~~ 92 (534)
|..+|++++++
T Consensus 108 l~~~i~~~~~~ 118 (120)
T 2a9o_A 108 LQARVKALLRR 118 (120)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcc
Confidence 99999988754
No 44
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.46 E-value=3.8e-13 Score=116.86 Aligned_cols=94 Identities=23% Similarity=0.365 Sum_probs=83.4
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE-FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~-~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~e 80 (534)
.+.+..+++..+.....||+||+|+.||+++|+++++.|++. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 36 ~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 115 (136)
T 3hdv_A 36 GADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLG 115 (136)
T ss_dssp EESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred EeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHH
Confidence 467899999998873349999999999999999999999987 6889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 043479 81 DLKNVWQYAMTYKKA 95 (534)
Q Consensus 81 eL~~aI~~aL~~k~~ 95 (534)
+|..+|++++.+...
T Consensus 116 ~l~~~i~~~~~~~~~ 130 (136)
T 3hdv_A 116 KLLELVNKELKIGEG 130 (136)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHhcCchh
Confidence 999999999876554
No 45
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.46 E-value=1.6e-13 Score=121.26 Aligned_cols=92 Identities=21% Similarity=0.370 Sum_probs=79.2
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.++++.+.. ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 34 ~~~~~~~al~~~~~-~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~ 112 (141)
T 3cu5_A 34 QADDGINAIQIALK-HPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSE 112 (141)
T ss_dssp EESSHHHHHHHHTT-SCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCCHHH
T ss_pred ecccHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHH
Confidence 57789999999976 78999999999999999999999999889999999999988888889999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 043479 82 LKNVWQYAMTYKK 94 (534)
Q Consensus 82 L~~aI~~aL~~k~ 94 (534)
|..+|+++++...
T Consensus 113 L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 113 IMDALKQSIQTVL 125 (141)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887644
No 46
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.46 E-value=5.5e-13 Score=116.06 Aligned_cols=93 Identities=24% Similarity=0.286 Sum_probs=85.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHh--hCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~--~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.++.+|++.++. ..||+||+|+.+|+++|+++++.|++ ..+.+|||++|+..+.....++++.|+++||.||++.
T Consensus 39 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~ 117 (143)
T 3cnb_A 39 IAYNPFDAGDLLHT-VKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNF 117 (143)
T ss_dssp EECSHHHHHHHHHH-TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCH
T ss_pred EECCHHHHHHHHHh-cCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCH
Confidence 46789999999987 78999999999999999999999998 6788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 043479 80 DDLKNVWQYAMTYKKA 95 (534)
Q Consensus 80 eeL~~aI~~aL~~k~~ 95 (534)
++|..+|++++++...
T Consensus 118 ~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 118 TLLEKTIKQLVEQKKA 133 (143)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999876554
No 47
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.46 E-value=1.3e-13 Score=120.41 Aligned_cols=94 Identities=21% Similarity=0.350 Sum_probs=85.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHh--hCCCCcEEEEecCCCHHHHH-HHHHcCCcEEEeCCCC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIM-KALASGVAFYILKPLN 78 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~--~~p~ipVIVLSs~~d~~~~~-~AL~aGA~dyL~KP~s 78 (534)
++.++.+|++.++. ..||+||+|+.||+++|++++++|++ ..+.+|||++|+..+..... .+++.||++||.||++
T Consensus 35 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~ 113 (140)
T 3grc_A 35 MVHSAAQALEQVAR-RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPID 113 (140)
T ss_dssp EECSHHHHHHHHHH-SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCC
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCC
Confidence 57899999999987 78999999999999999999999998 67889999999988777776 8899999999999999
Q ss_pred hHHHHHHHHHHHHHhhhc
Q 043479 79 PDDLKNVWQYAMTYKKAK 96 (534)
Q Consensus 79 ~eeL~~aI~~aL~~k~~~ 96 (534)
.++|..+|+++++++...
T Consensus 114 ~~~l~~~i~~~l~~~~~~ 131 (140)
T 3grc_A 114 ENLLILSLHRAIDNMAEG 131 (140)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999999876644
No 48
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.46 E-value=2.6e-13 Score=117.24 Aligned_cols=93 Identities=22% Similarity=0.312 Sum_probs=80.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
++.++.+|++.+.. ..||+||+|+.||+++|+++++.|++. .+.+|||++|+..+... .++++.|+++||.||++.
T Consensus 32 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~ 109 (133)
T 3nhm_A 32 TAADGASGLQQALA-HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKP 109 (133)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC------TTSCCCSEEEESSCCH
T ss_pred EECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCH
Confidence 57899999999987 789999999999999999999999986 56899999999988777 889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 043479 80 DDLKNVWQYAMTYKKAK 96 (534)
Q Consensus 80 eeL~~aI~~aL~~k~~~ 96 (534)
++|..+|+++++++...
T Consensus 110 ~~l~~~i~~~l~~~~~~ 126 (133)
T 3nhm_A 110 PVLIAQLHALLARAEAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhhccc
Confidence 99999999999876543
No 49
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.46 E-value=4.7e-13 Score=119.03 Aligned_cols=94 Identities=20% Similarity=0.315 Sum_probs=86.4
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcC-CcEEEeCCCChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASG-VAFYILKPLNPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aG-A~dyL~KP~s~e 80 (534)
.+.++.+|++.+.+..+||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.| +++||.||++.+
T Consensus 32 ~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~ 111 (151)
T 3kcn_A 32 TCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMS 111 (151)
T ss_dssp EESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHH
T ss_pred EeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHH
Confidence 5789999999998733469999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 043479 81 DLKNVWQYAMTYKKA 95 (534)
Q Consensus 81 eL~~aI~~aL~~k~~ 95 (534)
+|..+|++++++...
T Consensus 112 ~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 112 DIKAAINAGIKQYDL 126 (151)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 50
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.46 E-value=1e-13 Score=121.35 Aligned_cols=95 Identities=23% Similarity=0.332 Sum_probs=84.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCC-CCCHHHHHHHHHh--hCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMP-EMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mP-dmdGleLL~~Lr~--~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s 78 (534)
++.++.+|++.+.+...|||||+|+.|| +++|++++++|++ ..+.+|||++|+..+.....++++.||++||.||++
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~ 113 (140)
T 3lua_A 34 EVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYP 113 (140)
T ss_dssp EECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCC
T ss_pred EECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 5788999999887425799999999999 9999999999999 889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhc
Q 043479 79 PDDLKNVWQYAMTYKKAK 96 (534)
Q Consensus 79 ~eeL~~aI~~aL~~k~~~ 96 (534)
.++|..+|++++++....
T Consensus 114 ~~~l~~~i~~~~~~~~~~ 131 (140)
T 3lua_A 114 TKRLENSVRSVLKICQRF 131 (140)
T ss_dssp TTHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 999999999999776544
No 51
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.46 E-value=6.1e-13 Score=118.30 Aligned_cols=92 Identities=24% Similarity=0.375 Sum_probs=82.6
Q ss_pred eecCHHHHHHHHHhc------CCceEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 2 TVTRPVEALATVRIQ------RDIDLVVTDLHMPEMNGIELQKEINEEF--THLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 2 tass~~EALe~L~~~------~~pDLVLLDi~mPdmdGleLL~~Lr~~~--p~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
.+.++.+|++.++.. ..||+||+|+.||+++|+++++.|++.. +.+|||++|+..+...+.++++.||++||
T Consensus 39 ~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l 118 (149)
T 1i3c_A 39 ILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYL 118 (149)
T ss_dssp EECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEE
T ss_pred EeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEE
Confidence 467899999998741 3699999999999999999999999753 67999999999999999999999999999
Q ss_pred eCCCChHHHHHHHHHHHHHh
Q 043479 74 LKPLNPDDLKNVWQYAMTYK 93 (534)
Q Consensus 74 ~KP~s~eeL~~aI~~aL~~k 93 (534)
.||++.++|..+|+++++.+
T Consensus 119 ~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 119 TKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp ECCSSHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 52
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.46 E-value=6.6e-13 Score=116.23 Aligned_cols=92 Identities=18% Similarity=0.365 Sum_probs=83.5
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHc-CCcEEEeCCCChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS-GVAFYILKPLNPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~a-GA~dyL~KP~s~e 80 (534)
++.++.++++.+.. ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....+++.. ||++||.||++.+
T Consensus 29 ~~~~~~~a~~~~~~-~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~ 107 (139)
T 2jk1_A 29 TAQGAEAAIAILEE-EWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPE 107 (139)
T ss_dssp EESSHHHHHHHHHH-SCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHH
T ss_pred EcCCHHHHHHHHhc-CCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHH
Confidence 46789999999987 789999999999999999999999998889999999999888888888876 5999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 043479 81 DLKNVWQYAMTYKK 94 (534)
Q Consensus 81 eL~~aI~~aL~~k~ 94 (534)
+|..+|+++++...
T Consensus 108 ~L~~~i~~~~~~~~ 121 (139)
T 2jk1_A 108 QLLSSARNAARMFT 121 (139)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887644
No 53
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.45 E-value=3.2e-13 Score=117.10 Aligned_cols=92 Identities=24% Similarity=0.442 Sum_probs=84.0
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.++++.+.. ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+......+++.|+++||.||++.++
T Consensus 32 ~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~ 110 (136)
T 1mvo_A 32 TASDGEEALKKAET-EKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPRE 110 (136)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHH
T ss_pred EecCHHHHHHHHhh-cCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHH
Confidence 46789999999887 67999999999999999999999999888899999999988888889999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 043479 82 LKNVWQYAMTYKK 94 (534)
Q Consensus 82 L~~aI~~aL~~k~ 94 (534)
|..+|++++++..
T Consensus 111 l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 111 VNARVKAILRRSE 123 (136)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhhc
Confidence 9999999886543
No 54
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.45 E-value=4.2e-13 Score=117.74 Aligned_cols=91 Identities=23% Similarity=0.306 Sum_probs=83.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.+.. ..||+||+|+.||+++|+++++.|++.. .+|||++|+..+.....++++.||++||.||++.++
T Consensus 33 ~~~~~~~al~~~~~-~~~dlvllD~~l~~~~g~~l~~~l~~~~-~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~ 110 (136)
T 2qzj_A 33 LAYNCEEAIGKIFS-NKYDLIFLEIILSDGDGWTLCKKIRNVT-TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEI 110 (136)
T ss_dssp EESSHHHHHHHHHH-CCCSEEEEESEETTEEHHHHHHHHHTTC-CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHH
T ss_pred EECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHccCC-CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHH
Confidence 46789999999987 7899999999999999999999999765 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 043479 82 LKNVWQYAMTYKK 94 (534)
Q Consensus 82 L~~aI~~aL~~k~ 94 (534)
|..+|++++++..
T Consensus 111 L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 111 LYAKVKAILRRMN 123 (136)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887644
No 55
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.45 E-value=1.2e-13 Score=121.71 Aligned_cols=92 Identities=13% Similarity=0.211 Sum_probs=83.6
Q ss_pred eecCHHHHHHHHHhc-CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChH
Q 043479 2 TVTRPVEALATVRIQ-RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~-~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~e 80 (534)
.+.+..+++..+.+. ..|||||+|+.||+++|+++++.|++..+.+|||++|+..+.+...++++.||++||.||++.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 129 (146)
T 4dad_A 50 RTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPR 129 (146)
T ss_dssp EECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHH
T ss_pred EeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHH
Confidence 456777788776543 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 043479 81 DLKNVWQYAMTYK 93 (534)
Q Consensus 81 eL~~aI~~aL~~k 93 (534)
+|..+|+++++++
T Consensus 130 ~L~~~i~~~~~~~ 142 (146)
T 4dad_A 130 ALDDALKRAAAQC 142 (146)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998764
No 56
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.45 E-value=6.5e-13 Score=116.90 Aligned_cols=92 Identities=20% Similarity=0.343 Sum_probs=85.6
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHh--hCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~--~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++ ..+.+|||++|+..+.....++++.|+++||.||++.
T Consensus 37 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~ 115 (147)
T 2zay_A 37 QCGNAIEAVPVAVK-THPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNA 115 (147)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCH
T ss_pred EeCCHHHHHHHHHc-CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCH
Confidence 47789999999987 68999999999999999999999998 6788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 043479 80 DDLKNVWQYAMTYKK 94 (534)
Q Consensus 80 eeL~~aI~~aL~~k~ 94 (534)
++|..+|+++++...
T Consensus 116 ~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 116 IRLSARIKRVLKLLY 130 (147)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 57
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.45 E-value=3.1e-13 Score=121.49 Aligned_cols=89 Identities=25% Similarity=0.370 Sum_probs=83.8
Q ss_pred eecCHHHHHHHHHhcC--CceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQR--DIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~--~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
++.++.+|++.+.+ . .|||||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.
T Consensus 66 ~~~~~~~al~~l~~-~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~ 144 (157)
T 3hzh_A 66 TAADGEEAVIKYKN-HYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDR 144 (157)
T ss_dssp EESSHHHHHHHHHH-HGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCH
T ss_pred EECCHHHHHHHHHh-cCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCH
Confidence 57899999999987 5 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 043479 80 DDLKNVWQYAMT 91 (534)
Q Consensus 80 eeL~~aI~~aL~ 91 (534)
++|..+|+++++
T Consensus 145 ~~l~~~i~~~l~ 156 (157)
T 3hzh_A 145 AKVLQRVMSVFV 156 (157)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999998763
No 58
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.45 E-value=2.7e-13 Score=116.49 Aligned_cols=89 Identities=17% Similarity=0.355 Sum_probs=81.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.++.++++.+.. ..||+||+|+.||+++|++++++|++. .+.+|||++|+..+.....++++.|+++||.||++.
T Consensus 36 ~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~ 114 (129)
T 1p6q_A 36 AAGDGEQGMKIMAQ-NPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTI 114 (129)
T ss_dssp CCSSHHHHHHHHHT-SCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSH
T ss_pred ecCCHHHHHHHHHc-CCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCH
Confidence 35789999999987 789999999999999999999999875 578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 043479 80 DDLKNVWQYAMT 91 (534)
Q Consensus 80 eeL~~aI~~aL~ 91 (534)
++|..+|+++++
T Consensus 115 ~~l~~~i~~~~~ 126 (129)
T 1p6q_A 115 EKMKAAIEAVFG 126 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998874
No 59
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.44 E-value=8.4e-15 Score=130.91 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=73.5
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
+|.++++|++.+++ .+||+||+|+.||+++|++++++|++. ++|||++|++.+... +.++|+.+||.||++.++
T Consensus 38 ~a~~g~eAl~~~~~-~~~DlvllDi~mP~~~G~el~~~lr~~--~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~ 111 (123)
T 2lpm_A 38 TASRMQEALDIARK-GQFDIAIIDVNLDGEPSYPVADILAER--NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSE 111 (123)
T ss_dssp CSCCHHHHHHHHHH-CCSSEEEECSSSSSCCSHHHHHHHHHT--CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHcC--CCCEEEEecCccHHH---HHhCCCCcEEECCCCHHH
Confidence 46899999999988 899999999999999999999999974 699999999887653 346799999999999999
Q ss_pred HHHHHHHHH
Q 043479 82 LKNVWQYAM 90 (534)
Q Consensus 82 L~~aI~~aL 90 (534)
|..+|++++
T Consensus 112 L~~~l~~~~ 120 (123)
T 2lpm_A 112 LEAVLVQIS 120 (123)
T ss_dssp HHHHHSTTC
T ss_pred HHHHHHHHH
Confidence 999987764
No 60
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.44 E-value=1e-13 Score=121.34 Aligned_cols=95 Identities=23% Similarity=0.351 Sum_probs=78.3
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEF--THLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~--p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
++.++.+|++.+.. ..|||||+|+.||+++|+++++.|++.. +.+|||++|+..+.+...++++.||++||.||++.
T Consensus 31 ~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~ 109 (140)
T 3n53_A 31 ESKNEKEALEQIDH-HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNR 109 (140)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCH
Confidence 57899999999987 6899999999999999999999999876 88999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 043479 80 DDLKNVWQYAMTYKKAKS 97 (534)
Q Consensus 80 eeL~~aI~~aL~~k~~~s 97 (534)
++|..+|+++++++...+
T Consensus 110 ~~l~~~i~~~~~~~~~~~ 127 (140)
T 3n53_A 110 NDLLSRIEIHLRTQNYYS 127 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 999999999998877654
No 61
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.44 E-value=4.4e-13 Score=113.40 Aligned_cols=90 Identities=27% Similarity=0.477 Sum_probs=82.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+++..+.. ..||+||+|+.||+++|+++++.+++ .+.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 30 ~~~~~~~~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~ 107 (121)
T 1zh2_A 30 EAETLQRGLLEAAT-RKPDLIILDLGLPDGDGIEFIRDLRQ-WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGE 107 (121)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESEETTEEHHHHHHHHHT-TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEeCCCCCCcHHHHHHHHHh-CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHH
Confidence 46788999998876 67999999999999999999999994 67899999999999998999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 043479 82 LKNVWQYAMTYK 93 (534)
Q Consensus 82 L~~aI~~aL~~k 93 (534)
|..+|++++++.
T Consensus 108 l~~~i~~~~~~~ 119 (121)
T 1zh2_A 108 LQARLRVALRRH 119 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988653
No 62
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.44 E-value=2.4e-13 Score=115.82 Aligned_cols=90 Identities=22% Similarity=0.405 Sum_probs=76.2
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|++++++|++. .+.+|||++|+..+.....++++.|+++||.||++.
T Consensus 30 ~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~ 108 (124)
T 1mb3_A 30 QTREGLSALSIARE-NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISV 108 (124)
T ss_dssp EESCHHHHHHHHHH-HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCH
Confidence 46789999999887 679999999999999999999999974 467999999999888888899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 043479 80 DDLKNVWQYAMTY 92 (534)
Q Consensus 80 eeL~~aI~~aL~~ 92 (534)
++|..+|++++.+
T Consensus 109 ~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 109 VHFLETIKRLLER 121 (124)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988743
No 63
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.44 E-value=9e-13 Score=114.55 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=86.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCC-CCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMP-EMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mP-dmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~e 80 (534)
++.+..+|++.+.. ..||+||+|+.+| +++|+++++.|++. +.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 39 ~~~~~~~a~~~~~~-~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~ 116 (140)
T 3cg0_A 39 VFDNGEEAVRCAPD-LRPDIALVDIMLCGALDGVETAARLAAG-CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAAD 116 (140)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHH
Confidence 37899999999987 6799999999998 79999999999988 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcc
Q 043479 81 DLKNVWQYAMTYKKAKS 97 (534)
Q Consensus 81 eL~~aI~~aL~~k~~~s 97 (534)
+|..+|+++++++...+
T Consensus 117 ~l~~~i~~~~~~~~~~~ 133 (140)
T 3cg0_A 117 TLHRSIEMAIHKKKLEE 133 (140)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccccCC
Confidence 99999999998776543
No 64
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.43 E-value=7.4e-13 Score=115.65 Aligned_cols=94 Identities=27% Similarity=0.334 Sum_probs=83.8
Q ss_pred eecCHHHHHHHHHhc----CCceEEEEeCCCCCCCHHHHHHHHHh----hCCCCcEEEEecCCCHHHHHHHHHcC-CcEE
Q 043479 2 TVTRPVEALATVRIQ----RDIDLVVTDLHMPEMNGIELQKEINE----EFTHLPVMVMSSDDRESVIMKALASG-VAFY 72 (534)
Q Consensus 2 tass~~EALe~L~~~----~~pDLVLLDi~mPdmdGleLL~~Lr~----~~p~ipVIVLSs~~d~~~~~~AL~aG-A~dy 72 (534)
++.++.+|++.+++. ..|||||+|+.||+++|+++++.|++ ..+.+|||++|+..+.....+++..| +++|
T Consensus 40 ~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~ 119 (146)
T 3ilh_A 40 SVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYY 119 (146)
T ss_dssp EESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEE
T ss_pred ecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCccee
Confidence 467999999998751 57999999999999999999999998 67889999999999999999999999 9999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhh
Q 043479 73 ILKPLNPDDLKNVWQYAMTYKKA 95 (534)
Q Consensus 73 L~KP~s~eeL~~aI~~aL~~k~~ 95 (534)
|.||++.++|..+|+++...+..
T Consensus 120 l~KP~~~~~L~~~i~~~~~~~~~ 142 (146)
T 3ilh_A 120 VSKPLTANALNNLYNKVLNEGHH 142 (146)
T ss_dssp ECSSCCHHHHHHHHHHHHCC---
T ss_pred eeCCCCHHHHHHHHHHHHHhccC
Confidence 99999999999999998865543
No 65
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.43 E-value=7.2e-13 Score=117.85 Aligned_cols=94 Identities=22% Similarity=0.332 Sum_probs=87.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.+.. ..||+||+|+.|++++|+++++.|++..+.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~ 114 (153)
T 3cz5_A 36 EAADAGEAYRLYRE-TTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAE 114 (153)
T ss_dssp EESSHHHHHHHHHT-TCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHH
Confidence 57899999999987 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 043479 82 LKNVWQYAMTYKKAK 96 (534)
Q Consensus 82 L~~aI~~aL~~k~~~ 96 (534)
|..+|+++++++...
T Consensus 115 L~~~i~~~~~~~~~~ 129 (153)
T 3cz5_A 115 LVQAIEAILAGRRAM 129 (153)
T ss_dssp HHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHhCCccC
Confidence 999999998765443
No 66
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.43 E-value=2e-13 Score=117.20 Aligned_cols=90 Identities=22% Similarity=0.316 Sum_probs=80.4
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.++.+|++.++. ..||+||+|+.||+++|++++++|++. .+.+|||++|+..+... .+++..|+++||.||++.
T Consensus 32 ~~~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~ 109 (127)
T 3i42_A 32 YVMSGTDALHAMST-RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDI 109 (127)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCH
T ss_pred EECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCH
Confidence 57899999999987 789999999999999999999999987 78899999999988887 889999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 043479 80 DDLKNVWQYAMTYK 93 (534)
Q Consensus 80 eeL~~aI~~aL~~k 93 (534)
++|.+++++.....
T Consensus 110 ~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 110 ASLEPILQSIEGHH 123 (127)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHhhccC
Confidence 99999999887554
No 67
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.43 E-value=4.4e-14 Score=123.16 Aligned_cols=90 Identities=14% Similarity=0.099 Sum_probs=82.7
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.+.. ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.||++||.||++.++
T Consensus 44 ~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~ 122 (135)
T 3snk_A 44 VSETDDFLKGPPAD-TRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKE 122 (135)
T ss_dssp EECGGGGGGCCCTT-CCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHH
T ss_pred EeccHHHHHHHHhc-cCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHH
Confidence 46788899988876 78999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 043479 82 LKNVWQYAMTY 92 (534)
Q Consensus 82 L~~aI~~aL~~ 92 (534)
|..+|++++++
T Consensus 123 L~~~i~~~~~~ 133 (135)
T 3snk_A 123 LLNAVTFHDTG 133 (135)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHhcc
Confidence 99999987654
No 68
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.43 E-value=8.1e-13 Score=114.83 Aligned_cols=93 Identities=19% Similarity=0.391 Sum_probs=84.5
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCC-----CCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMP-----EMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mP-----dmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP 76 (534)
.+.+..+|++.+.. ..||+||+|+.++ +++|+++++.|++..+.+|||++|+..+.....++++.|+++||.||
T Consensus 32 ~~~~~~~a~~~l~~-~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp 110 (140)
T 2qr3_A 32 TLSSPVSLSTVLRE-ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKP 110 (140)
T ss_dssp EECCHHHHHHHHHH-SCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEES
T ss_pred EeCCHHHHHHHHHc-CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCC
Confidence 46789999999987 7899999999999 99999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhh
Q 043479 77 LNPDDLKNVWQYAMTYKKA 95 (534)
Q Consensus 77 ~s~eeL~~aI~~aL~~k~~ 95 (534)
++.++|..+|++++++...
T Consensus 111 ~~~~~l~~~l~~~~~~~~~ 129 (140)
T 2qr3_A 111 WDNQKLLETLLNAASQAKD 129 (140)
T ss_dssp CCHHHHHHHHHHHHTCC--
T ss_pred CCHHHHHHHHHHHHHhccc
Confidence 9999999999999876543
No 69
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.43 E-value=5.3e-13 Score=116.81 Aligned_cols=93 Identities=27% Similarity=0.368 Sum_probs=84.3
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.+.. ..||+||+|+ +|+++|+++++.|++..+.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 33 ~~~~~~~a~~~l~~-~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~ 110 (142)
T 2qxy_A 33 WAKNEQEAFTFLRR-EKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDY 110 (142)
T ss_dssp EESSHHHHHHHHTT-SCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHH
T ss_pred EECCHHHHHHHHhc-cCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHH
Confidence 46789999999987 7899999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 043479 82 LKNVWQYAMTYKKAK 96 (534)
Q Consensus 82 L~~aI~~aL~~k~~~ 96 (534)
|..+|+++++++...
T Consensus 111 l~~~i~~~~~~~~~~ 125 (142)
T 2qxy_A 111 LLERVKKIISSTPRV 125 (142)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHhhcccc
Confidence 999999998766544
No 70
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.43 E-value=7.5e-13 Score=130.59 Aligned_cols=93 Identities=26% Similarity=0.470 Sum_probs=84.2
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCC--CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFT--HLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p--~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
++.++.+|++.++....|||||+|+.||+++|++++++|++..+ .+|||++|+..+.....+++++||++||.||++.
T Consensus 153 ~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~ 232 (259)
T 3luf_A 153 EASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEP 232 (259)
T ss_dssp EESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCH
T ss_pred EeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCH
Confidence 57899999999986224899999999999999999999998754 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 043479 80 DDLKNVWQYAMTYKK 94 (534)
Q Consensus 80 eeL~~aI~~aL~~k~ 94 (534)
++|..+|+++++...
T Consensus 233 ~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 233 EELQCRVSHNLEALE 247 (259)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHh
Confidence 999999999987654
No 71
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.43 E-value=1.4e-12 Score=112.62 Aligned_cols=93 Identities=28% Similarity=0.378 Sum_probs=84.7
Q ss_pred eecCHHHHHHHHHhc------CCceEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 2 TVTRPVEALATVRIQ------RDIDLVVTDLHMPEMNGIELQKEINEEF--THLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 2 tass~~EALe~L~~~------~~pDLVLLDi~mPdmdGleLL~~Lr~~~--p~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
.+.++.+|++.+... ..||+||+|+.||+++|+++++.|++.. +.+|||++|+..+.....++++.|+++||
T Consensus 33 ~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l 112 (140)
T 1k68_A 33 TVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYI 112 (140)
T ss_dssp EECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEE
T ss_pred EECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhhee
Confidence 467899999998751 4799999999999999999999999865 78999999999999999999999999999
Q ss_pred eCCCChHHHHHHHHHHHHHhh
Q 043479 74 LKPLNPDDLKNVWQYAMTYKK 94 (534)
Q Consensus 74 ~KP~s~eeL~~aI~~aL~~k~ 94 (534)
.||++.++|..+|+++++...
T Consensus 113 ~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 113 TKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp ECCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999987654
No 72
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.42 E-value=1.4e-13 Score=143.94 Aligned_cols=167 Identities=16% Similarity=0.160 Sum_probs=116.7
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCH-----HHHHHHHHcCCcEEEeCC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRE-----SVIMKALASGVAFYILKP 76 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~-----~~~~~AL~aGA~dyL~KP 76 (534)
++.++.+|++.++....|||||+|+.||+++|+++++++++..+.++||++|+..+. ..+.++++.||++||.||
T Consensus 33 ~a~~g~eal~~l~~~~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP 112 (400)
T 3sy8_A 33 EAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKP 112 (400)
T ss_dssp EESSHHHHHHHHHHHSCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSS
T ss_pred EecCHHHHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCC
Confidence 578999999999762379999999999999999999999998887888888877766 567788999999999999
Q ss_pred CChHHHHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccC
Q 043479 77 LNPDDLKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATA 156 (534)
Q Consensus 77 ~s~eeL~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss 156 (534)
++.++|..+|++++.......... . ........++.......+. ...++|.. ........+.|.
T Consensus 113 ~~~~~L~~~i~~~~~~~~~~~~~~-------~---~~~~~~~~~l~~al~~~~~-~~~~QPiv--~~~~~~~~g~Ea--- 176 (400)
T 3sy8_A 113 FSLERITALLTRYNARRQDLPRQI-------E---VAELPSVADVVRGLDNGEF-EAYYQPKV--ALDGGGLIGAEV--- 176 (400)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCCC-------------CCCCCHHHHHHHHHTTCE-EEEEEEEE--ESSSCCEEEEEE---
T ss_pred cCHHHHHHHHHHHHHhhhhhhhhh-------h---hhcccHHHHHHHHHHCCcE-EEEEeCeE--EcCCCCEEEEEE---
Confidence 999999999999987654321110 0 0111223444444444444 45555542 122233444555
Q ss_pred CCCCCccCCch-----hhHHHHHHHHHhccCCCcHHH
Q 043479 157 PKKPKVAWTDS-----LHNRFLQAIRHIGLEKAVPKK 188 (534)
Q Consensus 157 ~kKprv~Wt~e-----Lh~RFleaLe~LGlekAvpK~ 188 (534)
.++|.++ .+..|+.+++..|+...+...
T Consensus 177 ----L~R~~~~~~~~i~p~~fi~~ae~~~l~~~l~~~ 209 (400)
T 3sy8_A 177 ----LARWNHPHLGVLPPSHFLYVMETYNLVDKLFWQ 209 (400)
T ss_dssp ----EEEEEETTTEEECGGGTHHHHHHTTCHHHHHHH
T ss_pred ----EEEEecCCCCEECHHHHHHHHHHCCCHHHHHHH
Confidence 6677664 478888888888765443333
No 73
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.42 E-value=1e-12 Score=124.52 Aligned_cols=161 Identities=17% Similarity=0.272 Sum_probs=116.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-Ch
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYILKPL-NP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~-s~ 79 (534)
.+.++.+|++.+.. ..||+|| ||+++|+++++.|++. + ++|||++|+..+.....++++.||++||.||+ +.
T Consensus 29 ~~~~~~~al~~l~~-~~~dlvi----lp~~~g~~~~~~lr~~-~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~ 102 (223)
T 2hqr_A 29 VTESLEDGEYLMDI-RNYDLVM----VSDKNALSFVSRIKEK-HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSI 102 (223)
T ss_dssp EESSHHHHHHHHTT-SCCSEEE----ECCTTHHHHHHHHHHH-CTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCT
T ss_pred EECCHHHHHHHHhc-CCCCEEE----eCCCCHHHHHHHHHhC-CCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCH
Confidence 57899999999987 7899999 8999999999999988 7 89999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhhhcccccccccceeecCCcCCccchhhHhhhhcccccccccccchhhhccccccccccccccCCCC
Q 043479 80 DDLKNVWQYAMTYKKAKSISIDEIGSFELAGFSAGKFSLDDIVSRSSVNERNKNNKDSKRKASKKDKGKQTKQNATAPKK 159 (534)
Q Consensus 80 eeL~~aI~~aL~~k~~~s~~i~e~~~~~~~~~s~~k~sl~dii~~s~~~e~~q~~k~~Krk~~~~~~~~~~~E~~ss~kK 159 (534)
++|..+|+.++++.. .... ...++. ... ..+ .. . . ..
T Consensus 103 ~~L~~~i~~~~~~~~--~~~~----------------~~~~~~----~~~------~~~-~~--~---~---~~------ 139 (223)
T 2hqr_A 103 KALVARIEARLRFWG--SNVI----------------EIGDLT----ISP------DEE-KI--I---Y---KG------ 139 (223)
T ss_dssp HHHHHHHHHHTSSCC--CCSE----------------EETTEE----EET------TTT-EE--E---E---TT------
T ss_pred HHHHHHHHHHhcccc--CCeE----------------EECCEE----Eec------ccC-EE--E---E---CC------
Confidence 999999999886530 0000 000000 000 000 00 0 0 00
Q ss_pred CCccCCchhhHHHHHHHHHhccC---CCcHHHHHHHcC-CCC-CCHHHHHHHHHHHHHHHH
Q 043479 160 PKVAWTDSLHNRFLQAIRHIGLE---KAVPKKILEFMN-VPG-LTRENVASHLQKYRIFLK 215 (534)
Q Consensus 160 prv~Wt~eLh~RFleaLe~LGle---kAvpK~ILe~M~-V~G-LT~~tVaSHLQKyRl~lk 215 (534)
....|+.++.+++..+... ....++|++.+. .+. ++..+|+.|+.+.|..|.
T Consensus 140 ----~~~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~ 196 (223)
T 2hqr_A 140 ----REVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMD 196 (223)
T ss_dssp ----EEECCCSTTTHHHHHHHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHH
T ss_pred ----EEEecCHHHHHHHHHHHhCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHh
Confidence 0113667777888888433 145899999885 222 689999999999888654
No 74
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.42 E-value=1.6e-12 Score=115.78 Aligned_cols=93 Identities=24% Similarity=0.475 Sum_probs=86.3
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcC-CcEEEeCCCChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASG-VAFYILKPLNPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aG-A~dyL~KP~s~e 80 (534)
.+.++.+|++.+.. ..||+||+|+.+|+++|+++++.|++..+.+|||++|+..+.....++++.| +++||.||++.+
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~ 114 (154)
T 2rjn_A 36 TFTSPLDALEALKG-TSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDE 114 (154)
T ss_dssp EESCHHHHHHHHTT-SCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHH
Confidence 47789999999987 7899999999999999999999999998999999999999988999999998 999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 043479 81 DLKNVWQYAMTYKKA 95 (534)
Q Consensus 81 eL~~aI~~aL~~k~~ 95 (534)
+|..+|++++++...
T Consensus 115 ~L~~~i~~~~~~~~~ 129 (154)
T 2rjn_A 115 DVFKVVEKGLQLAFL 129 (154)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877654
No 75
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.41 E-value=4.2e-13 Score=117.88 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=84.5
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPE-MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPd-mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~e 80 (534)
++.++.+|++.+.....|||||+|+.||+ ++|+++++.|++. +.+|||++|+..+.....++++.||++||.||++.+
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~ 112 (140)
T 3h5i_A 34 IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQ 112 (140)
T ss_dssp EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHH
T ss_pred EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHH
Confidence 57789999999975357999999999995 9999999999986 789999999999888888899999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 043479 81 DLKNVWQYAMTYKKAK 96 (534)
Q Consensus 81 eL~~aI~~aL~~k~~~ 96 (534)
+|..+|++++++.+..
T Consensus 113 ~l~~~i~~~l~~~~~~ 128 (140)
T 3h5i_A 113 VLITIVEMALRLYEAN 128 (140)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999876543
No 76
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.41 E-value=2e-12 Score=112.97 Aligned_cols=93 Identities=24% Similarity=0.366 Sum_probs=84.7
Q ss_pred eecCHHHHHHHHHhc---------CCceEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEEEecCCCHHHHHHHHHcCCc
Q 043479 2 TVTRPVEALATVRIQ---------RDIDLVVTDLHMPEMNGIELQKEINEEF--THLPVMVMSSDDRESVIMKALASGVA 70 (534)
Q Consensus 2 tass~~EALe~L~~~---------~~pDLVLLDi~mPdmdGleLL~~Lr~~~--p~ipVIVLSs~~d~~~~~~AL~aGA~ 70 (534)
.+.++.+|++.+... ..||+||+|+.||+++|+++++.|++.. +.+|||++|+..+.....++++.|++
T Consensus 37 ~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~ 116 (149)
T 1k66_A 37 RCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSIS 116 (149)
T ss_dssp EECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCS
T ss_pred EECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCC
Confidence 467899999999751 4799999999999999999999999865 78999999999999999999999999
Q ss_pred EEEeCCCChHHHHHHHHHHHHHhh
Q 043479 71 FYILKPLNPDDLKNVWQYAMTYKK 94 (534)
Q Consensus 71 dyL~KP~s~eeL~~aI~~aL~~k~ 94 (534)
+||.||++.++|..+|+++++.+.
T Consensus 117 ~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 117 SYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999987654
No 77
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.40 E-value=1.3e-12 Score=116.49 Aligned_cols=93 Identities=24% Similarity=0.389 Sum_probs=86.3
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++..+.+|||++|+..+......+++.|+++||.||++.++
T Consensus 32 ~~~~~~~a~~~l~~-~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~ 110 (155)
T 1qkk_A 32 SFASATEALAGLSA-DFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADR 110 (155)
T ss_dssp EESCHHHHHHTCCT-TCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHH
Confidence 46789999999876 78999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 043479 82 LKNVWQYAMTYKKA 95 (534)
Q Consensus 82 L~~aI~~aL~~k~~ 95 (534)
|..+|++++++++.
T Consensus 111 L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 111 LVQSARRAEEKRRL 124 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876553
No 78
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.40 E-value=5.2e-13 Score=139.25 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=87.5
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.+.. ..|||||+|+.||+++|++++++|++..+++|||++|++.+.+.+.++++.||++||.||++.++
T Consensus 29 ~a~~~~eal~~l~~-~~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~ 107 (368)
T 3dzd_A 29 TAKTLREAEKKIKE-LFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVER 107 (368)
T ss_dssp EESSHHHHHHHHHH-BCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHH
Confidence 57899999999987 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 043479 82 LKNVWQYAMTYKKA 95 (534)
Q Consensus 82 L~~aI~~aL~~k~~ 95 (534)
|..+|++++.....
T Consensus 108 L~~~i~~~l~~~~~ 121 (368)
T 3dzd_A 108 FLLTIKHAFEEYSK 121 (368)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999876543
No 79
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.39 E-value=1.7e-13 Score=117.24 Aligned_cols=90 Identities=21% Similarity=0.319 Sum_probs=82.2
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEF--THLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~--p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.++.++++.+.. ..||+||+|+.||+++|++++++|++.. +.+|||++|+..+.....++++.|+++||.||++.
T Consensus 31 ~~~~~~~a~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~ 109 (127)
T 2jba_A 31 EAEDYDSAVNQLNE-PWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSP 109 (127)
T ss_dssp EECSHHHHHTTCSS-SCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCH
T ss_pred EeCCHHHHHHHHhc-cCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCH
Confidence 46788999998876 6899999999999999999999999764 78999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 043479 80 DDLKNVWQYAMTY 92 (534)
Q Consensus 80 eeL~~aI~~aL~~ 92 (534)
++|..+|++++++
T Consensus 110 ~~l~~~i~~~~~~ 122 (127)
T 2jba_A 110 KELVARIKAVMRR 122 (127)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998754
No 80
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.39 E-value=9.7e-13 Score=124.79 Aligned_cols=91 Identities=26% Similarity=0.371 Sum_probs=79.0
Q ss_pred eecCHHHHHHHHHhc------------CCceEEEEeCCCCCCCHHHHHHHHHhh----CCCCcEEEEecCC-CHHHHHHH
Q 043479 2 TVTRPVEALATVRIQ------------RDIDLVVTDLHMPEMNGIELQKEINEE----FTHLPVMVMSSDD-RESVIMKA 64 (534)
Q Consensus 2 tass~~EALe~L~~~------------~~pDLVLLDi~mPdmdGleLL~~Lr~~----~p~ipVIVLSs~~-d~~~~~~A 64 (534)
.+.++.+|++.++.. ..|||||+|+.||+++|++++++|++. .+.+|||++|+.. +.+...++
T Consensus 91 ~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~ 170 (206)
T 3mm4_A 91 QCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARET 170 (206)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHH
T ss_pred eeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHH
Confidence 578999999999762 279999999999999999999999985 5889999999998 77888899
Q ss_pred HHcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 043479 65 LASGVAFYILKPLNPDDLKNVWQYAMTYKK 94 (534)
Q Consensus 65 L~aGA~dyL~KP~s~eeL~~aI~~aL~~k~ 94 (534)
++.|+++||.||++ +|..+|+++++.+.
T Consensus 171 ~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 171 IQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp HHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred HhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 99999999999998 89999999886654
No 81
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.39 E-value=7.6e-13 Score=111.59 Aligned_cols=86 Identities=23% Similarity=0.347 Sum_probs=78.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.++++.+.. ..||+||+|+.||+++|+++++.+++..+.+|||++|+..+.. .++++.|+++||.||++.++
T Consensus 30 ~~~~~~~a~~~~~~-~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~ 106 (116)
T 3a10_A 30 TAENGEEALKKFFS-GNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDE 106 (116)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH--HHHHhccccceEECCCCHHH
Confidence 46789999999987 7899999999999999999999999988899999999987655 67889999999999999999
Q ss_pred HHHHHHHHH
Q 043479 82 LKNVWQYAM 90 (534)
Q Consensus 82 L~~aI~~aL 90 (534)
|..+|++++
T Consensus 107 l~~~i~~~~ 115 (116)
T 3a10_A 107 LKEKVKKLL 115 (116)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
No 82
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.39 E-value=9.9e-13 Score=129.02 Aligned_cols=92 Identities=26% Similarity=0.400 Sum_probs=85.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.++. ..||+||+|+.||+++|++++++|++..+.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 158 ~a~~~~eal~~l~~-~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~ 236 (254)
T 2ayx_A 158 TANDGVDALNVLSK-NHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDV 236 (254)
T ss_dssp EECCSHHHHHHHHH-SCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHH
Confidence 57889999999987 78999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 043479 82 LKNVWQYAMTYKK 94 (534)
Q Consensus 82 L~~aI~~aL~~k~ 94 (534)
|..+|+++++..+
T Consensus 237 L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 237 IKQTLTLYAERVR 249 (254)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999886644
No 83
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.39 E-value=5.2e-13 Score=116.59 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=86.0
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHh--hCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE--EFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~--~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.+.++|++.++. ..||+||+|+.+|+++|+++++.|++ ..+.+|||++|+..+.....++++.|+++||.||++.
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~ 114 (142)
T 3cg4_A 36 SADSGGQCIDLLKK-GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDN 114 (142)
T ss_dssp EESSHHHHHHHHHT-CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCH
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCH
Confidence 46789999999987 78999999999999999999999998 6788999999999888888889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 043479 80 DDLKNVWQYAMTYKKAK 96 (534)
Q Consensus 80 eeL~~aI~~aL~~k~~~ 96 (534)
++|..+|++++++.+..
T Consensus 115 ~~l~~~i~~~~~~~~~~ 131 (142)
T 3cg4_A 115 EDLIEKTTFFMGFVRNQ 131 (142)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999998776543
No 84
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.39 E-value=2.1e-13 Score=137.33 Aligned_cols=89 Identities=24% Similarity=0.396 Sum_probs=81.2
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCC-CCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMP-EMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mP-dmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~e 80 (534)
++.++.+|++.+.. ..|||||+|+.|| +|||+++++.||+.. ++|||++|+..+ ...+++++|+++||.||++++
T Consensus 190 ~a~~g~eAl~~~~~-~~~dlvl~D~~MPd~mdG~e~~~~ir~~~-~~piI~lT~~~~--~~~~~~~~G~~~~l~KP~~~~ 265 (286)
T 3n0r_A 190 IAATRGEALEAVTR-RTPGLVLADIQLADGSSGIDAVKDILGRM-DVPVIFITAFPE--RLLTGERPEPTFLITKPFQPE 265 (286)
T ss_dssp EESSHHHHHHHHHH-CCCSEEEEESCCTTSCCTTTTTHHHHHHT-TCCEEEEESCGG--GGCCSSSCCCSSEEESSCCHH
T ss_pred EeCCHHHHHHHHHh-CCCCEEEEcCCCCCCCCHHHHHHHHHhcC-CCCEEEEeCCHH--HHHHHHhCCCcEEEeCCCCHH
Confidence 58899999999987 7899999999999 799999999999887 899999999853 456789999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 043479 81 DLKNVWQYAMTYKK 94 (534)
Q Consensus 81 eL~~aI~~aL~~k~ 94 (534)
+|..+|++++....
T Consensus 266 ~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 266 TVKAAIGQALFFHP 279 (286)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999997643
No 85
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.38 E-value=1.6e-12 Score=113.88 Aligned_cols=91 Identities=23% Similarity=0.330 Sum_probs=79.2
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++. .+.+|||++|+..+......++.+|+++||.||++.
T Consensus 32 ~~~~~~~al~~l~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~ 110 (138)
T 3c3m_A 32 TAFSGEECLEALNA-TPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTH 110 (138)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHH
T ss_pred EeCCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCH
Confidence 46789999999987 789999999999999999999999975 357999999998766655666677789999999999
Q ss_pred HHHHHHHHHHHHHh
Q 043479 80 DDLKNVWQYAMTYK 93 (534)
Q Consensus 80 eeL~~aI~~aL~~k 93 (534)
++|..+|++++.++
T Consensus 111 ~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 111 HQLYEAIEHVLARR 124 (138)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988543
No 86
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.38 E-value=2.8e-12 Score=110.52 Aligned_cols=91 Identities=18% Similarity=0.329 Sum_probs=76.5
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEF--THLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~--p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
++.++.+|++.+.. ..||+||+|+.||+++|++++++|++.. +.++||+++...+. ...++++.||++||.||++.
T Consensus 35 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~ 112 (132)
T 3lte_A 35 IAHNGFDAGIKLST-FEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDN 112 (132)
T ss_dssp EESSHHHHHHHHHH-TCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCH
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCH
Confidence 57789999999987 7899999999999999999999999865 44555555555444 77899999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 043479 80 DDLKNVWQYAMTYKK 94 (534)
Q Consensus 80 eeL~~aI~~aL~~k~ 94 (534)
++|..+|+++..+..
T Consensus 113 ~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 113 DALLDRIHDLVNEGH 127 (132)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999886654
No 87
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.37 E-value=9.5e-13 Score=116.97 Aligned_cols=96 Identities=19% Similarity=0.254 Sum_probs=76.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.+..+|++.+.....||+||+|+.||+++|+++++.|++..+.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 34 ~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~ 113 (154)
T 2qsj_A 34 GAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQV 113 (154)
T ss_dssp EESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHH
T ss_pred EecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHH
Confidence 46789999999975257999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 043479 82 LKNVWQYAMTYKKAKS 97 (534)
Q Consensus 82 L~~aI~~aL~~k~~~s 97 (534)
|..+|+++++++...+
T Consensus 114 L~~~l~~~~~~~~~~~ 129 (154)
T 2qsj_A 114 LIHAVSLILEGEIFLP 129 (154)
T ss_dssp HHHHHHHHHTTCCBCC
T ss_pred HHHHHHHHHcCCEEcC
Confidence 9999999997765544
No 88
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.37 E-value=3.5e-12 Score=111.65 Aligned_cols=91 Identities=18% Similarity=0.284 Sum_probs=81.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.+|++.+.. ..|||||+|+.||+++|+++++.|++..+.++||++|+..+ ...++++.|+++||.||++.++
T Consensus 40 ~~~~~~~al~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~ 116 (143)
T 2qv0_A 40 SFDDGLDVLKFLQH-NKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKE--HAVEAFELEAFDYILKPYQESR 116 (143)
T ss_dssp EESCHHHHHHHHHH-CCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEESCCT--THHHHHHTTCSEEEESSCCHHH
T ss_pred EeCCHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHH
Confidence 46789999999987 78999999999999999999999998777788999998743 5678899999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 043479 82 LKNVWQYAMTYKKA 95 (534)
Q Consensus 82 L~~aI~~aL~~k~~ 95 (534)
|..+|+++++.++.
T Consensus 117 l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 117 IINMLQKLTTAWEQ 130 (143)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999877654
No 89
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.36 E-value=2e-12 Score=121.20 Aligned_cols=91 Identities=24% Similarity=0.428 Sum_probs=84.0
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.+.. ..||+||+|+.||+++|+++++.|++..+ .|||++|+..+.....++++.||++||.||++.++
T Consensus 43 ~~~~~~~al~~~~~-~~~dlvi~D~~~p~~~g~~~~~~l~~~~~-~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~ 120 (205)
T 1s8n_A 43 EAGDGQEAVELAEL-HKPDLVIMDVKMPRRDGIDAASEIASKRI-APIVVLTAFSQRDLVERARDAGAMAYLVKPFSISD 120 (205)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESSCSSSCHHHHHHHHHHTTC-SCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHH
T ss_pred EeCCHHHHHHHHhh-cCCCEEEEeCCCCCCChHHHHHHHHhcCC-CCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHH
Confidence 57899999999987 68999999999999999999999998766 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 043479 82 LKNVWQYAMTYKK 94 (534)
Q Consensus 82 L~~aI~~aL~~k~ 94 (534)
|..+|++++++..
T Consensus 121 L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 121 LIPAIELAVSRFR 133 (205)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 90
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.35 E-value=1.6e-12 Score=134.94 Aligned_cols=92 Identities=28% Similarity=0.445 Sum_probs=82.3
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-ChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL-NPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~-s~e 80 (534)
++.++.+|++.++. ..|||||+|+.||+++|++++++|++..+++|||++|+..+.+...++++.||++||.||+ ..+
T Consensus 34 ~a~~~~~al~~~~~-~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~ 112 (394)
T 3eq2_A 34 QALNGLQGLQIFES-EQPDLVICDLRMPQIDGLELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLA 112 (394)
T ss_dssp ECSSHHHHHHHHHH-SCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTH
T ss_pred EECCHHHHHHHHhh-CCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHH
Confidence 57899999999987 7899999999999999999999999998999999999999999999999999999999999 689
Q ss_pred HHHHHHHHHHHHhh
Q 043479 81 DLKNVWQYAMTYKK 94 (534)
Q Consensus 81 eL~~aI~~aL~~k~ 94 (534)
+|..+|+++++...
T Consensus 113 ~l~~~i~~~~~~~~ 126 (394)
T 3eq2_A 113 VLEHSVRRALDRAY 126 (394)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 99999998886543
No 91
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.35 E-value=7e-13 Score=114.28 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=80.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCH-----HHHHHHHHcCCcEEEeCC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRE-----SVIMKALASGVAFYILKP 76 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~-----~~~~~AL~aGA~dyL~KP 76 (534)
.+.+.+++++.+.. . ||+||+|+.||+++|+++++.|++..+.+|||++|+..+. ....++++.|+++||.||
T Consensus 32 ~~~~~~~~~~~~~~-~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP 109 (135)
T 3eqz_A 32 AFQHPRAFLTLSLN-K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKP 109 (135)
T ss_dssp EESCHHHHTTSCCC-T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred eecCHHHHHHhhcc-C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCC
Confidence 46788888888776 5 9999999999999999999999999999999999998875 666778899999999999
Q ss_pred CChHHHHHHHHHHHHHhhh
Q 043479 77 LNPDDLKNVWQYAMTYKKA 95 (534)
Q Consensus 77 ~s~eeL~~aI~~aL~~k~~ 95 (534)
++.++|..+|++++.++..
T Consensus 110 ~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 110 INTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp CCHHHHHHHHHHHSCCC--
T ss_pred CCHHHHHHHHHHHHhhccc
Confidence 9999999999998765543
No 92
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.34 E-value=6.6e-12 Score=109.66 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=81.6
Q ss_pred eecCHHHHHHHHHh-----cCCceEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 2 TVTRPVEALATVRI-----QRDIDLVVTDLHMPEMNGIELQKEINEEF--THLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 2 tass~~EALe~L~~-----~~~pDLVLLDi~mPdmdGleLL~~Lr~~~--p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.++.+|++.++. ...||+||+|+.||+++|+++++.|++.. +.+|||++|+..+.....++++.|+++||.
T Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 117 (143)
T 2qvg_A 38 IAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLI 117 (143)
T ss_dssp EESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEE
T ss_pred EECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEE
Confidence 46789999999974 14699999999999999999999999865 789999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHH
Q 043479 75 KPLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 75 KP~s~eeL~~aI~~aL~~ 92 (534)
||++.++|..++......
T Consensus 118 kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 118 KPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp SSCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999998776544
No 93
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.34 E-value=4.3e-12 Score=132.98 Aligned_cols=92 Identities=23% Similarity=0.368 Sum_probs=86.2
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++.++.+|++.+.. ..|||||+|+.||+++|++++++|++..+++|||++|+..+.+.+.++++.||++||.||++.++
T Consensus 29 ~a~~~~eal~~l~~-~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~ 107 (387)
T 1ny5_A 29 SAERGKEAYKLLSE-KHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEE 107 (387)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHH
T ss_pred EECCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHH
Confidence 57899999999987 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 043479 82 LKNVWQYAMTYKK 94 (534)
Q Consensus 82 L~~aI~~aL~~k~ 94 (534)
|..+|+++++...
T Consensus 108 L~~~i~~~l~~~~ 120 (387)
T 1ny5_A 108 IELTINKAIEHRK 120 (387)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999886543
No 94
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.33 E-value=4e-12 Score=110.59 Aligned_cols=89 Identities=25% Similarity=0.390 Sum_probs=77.4
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCC----C-CcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFT----H-LPVMVMSSDDRESVIMKALASGVAFYILKP 76 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p----~-ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP 76 (534)
++.++.+|++.+.. .. |+||+|+.||+++|+++++.|++..+ . .+||++|+..+.....++++.||++||.||
T Consensus 36 ~~~~~~~a~~~~~~-~~-dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP 113 (136)
T 1dcf_A 36 TVSSNEECLRVVSH-EH-KVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKP 113 (136)
T ss_dssp EESSHHHHHHHCCT-TC-SEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESS
T ss_pred EeCCHHHHHHHHhc-cC-CEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECC
Confidence 46789999998865 44 99999999999999999999985432 2 357889999999889999999999999999
Q ss_pred CChHHHHHHHHHHHHH
Q 043479 77 LNPDDLKNVWQYAMTY 92 (534)
Q Consensus 77 ~s~eeL~~aI~~aL~~ 92 (534)
++.++|..+|++++++
T Consensus 114 ~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 114 VSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhch
Confidence 9999999999998754
No 95
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.33 E-value=6.1e-12 Score=132.56 Aligned_cols=92 Identities=23% Similarity=0.366 Sum_probs=84.4
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
++.++.+|++.+.. ..|||||+|+.||+++|+++++.|++. .+.+|||++|+..+.....+++++||++||.||++.
T Consensus 30 ~a~~~~~al~~~~~-~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~ 108 (459)
T 1w25_A 30 TAMDGPTALAMAAR-DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDD 108 (459)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCH
T ss_pred EECCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCH
Confidence 57899999999987 689999999999999999999999974 467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 043479 80 DDLKNVWQYAMTYKK 94 (534)
Q Consensus 80 eeL~~aI~~aL~~k~ 94 (534)
++|..+|+++++...
T Consensus 109 ~~l~~~i~~~~~~~~ 123 (459)
T 1w25_A 109 VMLFARVRSLTRFKL 123 (459)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999886543
No 96
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.32 E-value=4.5e-12 Score=107.50 Aligned_cols=88 Identities=17% Similarity=0.304 Sum_probs=80.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCC-CCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMP-EMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mP-dmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s 78 (534)
.+.++.+|++.+.. ..||+||+|+.+| +++|+++++.|++. .+.+|||++ +..+.....++++.|+++||.||++
T Consensus 34 ~~~~~~~a~~~~~~-~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~ 111 (127)
T 2gkg_A 34 ETTDGKGSVEQIRR-DRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVD 111 (127)
T ss_dssp EECCHHHHHHHHHH-HCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCC
T ss_pred EecCHHHHHHHHHh-cCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCC
Confidence 46789999999987 6799999999999 99999999999987 688999999 8888888889999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 043479 79 PDDLKNVWQYAMT 91 (534)
Q Consensus 79 ~eeL~~aI~~aL~ 91 (534)
.++|..+|+++++
T Consensus 112 ~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 112 ADQLVERAGALIG 124 (127)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998874
No 97
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.32 E-value=5.8e-12 Score=114.31 Aligned_cols=89 Identities=28% Similarity=0.369 Sum_probs=77.5
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHH--HHHHHHHcCCcEEEeCCCC-
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRES--VIMKALASGVAFYILKPLN- 78 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~--~~~~AL~aGA~dyL~KP~s- 78 (534)
++.++.+|++.+.. ..|||||+|+.||+++|+++++.|++..+ +|||++++..+.. .+.++++.||++||.||++
T Consensus 56 ~~~~~~~al~~l~~-~~~dlvilD~~l~~~~g~~l~~~lr~~~~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~ 133 (164)
T 3t8y_A 56 FAKDGLEAVEKAIE-LKPDVITMDIEMPNLNGIEALKLIMKKAP-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGS 133 (164)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEECSSCSSSCHHHHHHHHHHHSC-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSS
T ss_pred ecCCHHHHHHHhcc-CCCCEEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCH
Confidence 47799999999987 68999999999999999999999999888 9999999977654 6778999999999999999
Q ss_pred --------hHHHHHHHHHHHHH
Q 043479 79 --------PDDLKNVWQYAMTY 92 (534)
Q Consensus 79 --------~eeL~~aI~~aL~~ 92 (534)
.++|.++|++++..
T Consensus 134 ~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 134 ISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp SCGGGGGGHHHHHHHHHHHTTS
T ss_pred HHHHHHhhhHHHHHHHHHHhCC
Confidence 56777777766543
No 98
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.32 E-value=6.3e-12 Score=127.61 Aligned_cols=89 Identities=22% Similarity=0.383 Sum_probs=82.2
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
++.++.+|++.+.. ..|||||+|+.||+++|+++++.|++. .+.+|||++|+..+.....++++.||++||.||++.
T Consensus 48 ~~~~~~~al~~~~~-~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~ 126 (358)
T 3bre_A 48 FCSDPQQAVAVANQ-IKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDA 126 (358)
T ss_dssp EECCHHHHHHHHHH-HCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCH
T ss_pred EeCCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCH
Confidence 47899999999987 689999999999999999999999874 567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 043479 80 DDLKNVWQYAMT 91 (534)
Q Consensus 80 eeL~~aI~~aL~ 91 (534)
++|..+|+.+++
T Consensus 127 ~~l~~~v~~~~~ 138 (358)
T 3bre_A 127 IELVARIRYHSR 138 (358)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 99
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.31 E-value=8.7e-12 Score=107.17 Aligned_cols=91 Identities=16% Similarity=0.264 Sum_probs=81.0
Q ss_pred eecCHHHHHHHHHhcC-CceEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQR-DIDLVVTDLHMPE-MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~-~pDLVLLDi~mPd-mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.++.+|++.+.. . .||+||+|+.+|+ ++|+++++.|++..+.+|||++|+..+......++..| +||.||++.
T Consensus 34 ~~~~~~~a~~~l~~-~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~ 110 (132)
T 2rdm_A 34 AVSSGAKAIEMLKS-GAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPDS--IILEKPFTS 110 (132)
T ss_dssp EESSHHHHHHHHHT-TCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCH
T ss_pred EECCHHHHHHHHHc-CCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCH
Confidence 46789999999987 5 7999999999998 99999999999988899999999999888777777665 899999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 043479 80 DDLKNVWQYAMTYKKA 95 (534)
Q Consensus 80 eeL~~aI~~aL~~k~~ 95 (534)
++|..+|++++.++..
T Consensus 111 ~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 111 AQLITAVSQLLNAREG 126 (132)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999876543
No 100
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.29 E-value=4.3e-12 Score=111.84 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=68.9
Q ss_pred eecCHHHHHHHHHhcC-CceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEec--CCCHHHHHHHHHcCCcEEEeCCCC
Q 043479 2 TVTRPVEALATVRIQR-DIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSS--DDRESVIMKALASGVAFYILKPLN 78 (534)
Q Consensus 2 tass~~EALe~L~~~~-~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs--~~d~~~~~~AL~aGA~dyL~KP~s 78 (534)
++.++.+|++.+.. . .|||||+|+.||+++|++++++|++..+ .|||+++. ..+...+.++++.||++||.||++
T Consensus 44 ~~~~~~~al~~l~~-~~~~dlvilD~~l~~~~g~~~~~~lr~~~~-~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~ 121 (145)
T 3kyj_B 44 QAANGQEALDKLAA-QPNVDLILLDIEMPVMDGMEFLRHAKLKTR-AKICMLSSVAVSGSPHAARARELGADGVVAKPSG 121 (145)
T ss_dssp EESSHHHHHHHHHH-CTTCCEEEECTTSCCCTTCHHHHHHHHHCC-CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCS
T ss_pred EECCHHHHHHHHhc-CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCC
Confidence 57899999999987 6 7999999999999999999999998877 89999987 556667889999999999999999
Q ss_pred hHHHHHHHH
Q 043479 79 PDDLKNVWQ 87 (534)
Q Consensus 79 ~eeL~~aI~ 87 (534)
.++|...++
T Consensus 122 ~~~l~~~i~ 130 (145)
T 3kyj_B 122 TVSHDLEEK 130 (145)
T ss_dssp CC------C
T ss_pred HHHHHHHHH
Confidence 666555443
No 101
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.27 E-value=2.1e-13 Score=115.66 Aligned_cols=91 Identities=26% Similarity=0.455 Sum_probs=82.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++.++++.+.. ..||+||+|+.||+++|+++++.+++..+.+|||++|+..+.....++++.|+++||.||++.++
T Consensus 32 ~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~ 110 (124)
T 1dc7_A 32 TFENGNEVLAALAS-KTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110 (124)
T ss_dssp ECCCTTHHHHHSSS-CCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHH
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHH
Confidence 45678899999876 78999999999999999999999999888999999999988888888999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 043479 82 LKNVWQYAMTYK 93 (534)
Q Consensus 82 L~~aI~~aL~~k 93 (534)
|..+|+++++++
T Consensus 111 l~~~i~~~~~~~ 122 (124)
T 1dc7_A 111 AVALVERAISHY 122 (124)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988653
No 102
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.26 E-value=1e-11 Score=108.72 Aligned_cols=90 Identities=26% Similarity=0.440 Sum_probs=75.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh-----CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE-----FTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~-----~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP 76 (534)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.|++. .+.+|||++|+........ ++|+++||.||
T Consensus 39 ~~~~~~~al~~l~~-~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP 114 (140)
T 3c97_A 39 VVTNGLQALQAYQN-RQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKP 114 (140)
T ss_dssp EESSHHHHHHHHHH-SCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESS
T ss_pred EECCHHHHHHHHhc-CCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCC
Confidence 46789999999987 789999999999999999999999874 4778999999876544322 78999999999
Q ss_pred CChHHHHHHHHHHHHHhhh
Q 043479 77 LNPDDLKNVWQYAMTYKKA 95 (534)
Q Consensus 77 ~s~eeL~~aI~~aL~~k~~ 95 (534)
++.++|..+|++++.+...
T Consensus 115 ~~~~~L~~~i~~~~~~~~~ 133 (140)
T 3c97_A 115 LNPNQLRDVVLTCHSEGAE 133 (140)
T ss_dssp CCHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHhCCCCC
Confidence 9999999999999866544
No 103
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.23 E-value=7.8e-12 Score=104.06 Aligned_cols=85 Identities=16% Similarity=0.215 Sum_probs=76.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEF--THLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~--p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.+..++++.+.. ..||+||+|+.+++++|+++++.+++.. +.+|||+++...+.. .+++.|+++||.||++.
T Consensus 30 ~~~~~~~~~~~l~~-~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~ 105 (119)
T 2j48_A 30 WLVDGSTALDQLDL-LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDP 105 (119)
T ss_dssp EESCHHHHHHHHHH-HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTT
T ss_pred EecCHHHHHHHHHh-cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCH
Confidence 46789999999987 6899999999999999999999999875 789999999987766 88999999999999999
Q ss_pred HHHHHHHHHHH
Q 043479 80 DDLKNVWQYAM 90 (534)
Q Consensus 80 eeL~~aI~~aL 90 (534)
++|..+|++++
T Consensus 106 ~~l~~~l~~~~ 116 (119)
T 2j48_A 106 QLLLTTLQGLC 116 (119)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 104
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.23 E-value=5.4e-11 Score=103.51 Aligned_cols=86 Identities=21% Similarity=0.301 Sum_probs=78.6
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-Ch
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYILKPL-NP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~-s~ 79 (534)
.+.++.+|++.+.. ..||+|| ||+++|+++++.|++. + .+|||++|+..+.....++++.|+++||.||+ +.
T Consensus 47 ~~~~~~~al~~l~~-~~~dlvi----~~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~ 120 (137)
T 2pln_A 47 VTESLEDGEYLMDI-RNYDLVM----VSDKNALSFVSRIKEK-HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSI 120 (137)
T ss_dssp EESCHHHHHHHHHH-SCCSEEE----ECSTTHHHHHHHHHHH-STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCH
T ss_pred EeCCHHHHHHHHHc-CCCCEEE----EcCccHHHHHHHHHhc-CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCH
Confidence 46789999999987 7899999 8999999999999988 8 89999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHh
Q 043479 80 DDLKNVWQYAMTYK 93 (534)
Q Consensus 80 eeL~~aI~~aL~~k 93 (534)
++|..+|+++++++
T Consensus 121 ~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 121 KALVARIEARLRFW 134 (137)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987543
No 105
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.10 E-value=1.8e-10 Score=106.95 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=70.1
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 043479 17 RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYAMTYKK 94 (534)
Q Consensus 17 ~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL~~k~ 94 (534)
..||+||+|+.||+++|+ +++.++...+.+|||++|+..+.+...++++.||++||.||++.++|..+|+.++....
T Consensus 51 ~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 51 VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISE 127 (196)
T ss_dssp SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence 469999999999999998 88888765588999999999999999999999999999999999999999999886644
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.09 E-value=2.9e-10 Score=117.84 Aligned_cols=90 Identities=22% Similarity=0.359 Sum_probs=79.4
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCH--HHHHHHHHcCCcEEEeCCCCh
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRE--SVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~--~~~~~AL~aGA~dyL~KP~s~ 79 (534)
++.++.+|++.++. ..|||||+|+.||+++|++++++|++..+ +|||++|+..+. +...++++.||++||.||++.
T Consensus 34 ~a~~~~eAl~~l~~-~~pDlVllDi~mp~~dGlell~~l~~~~p-~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~ 111 (349)
T 1a2o_A 34 TAPDPLVARDLIKK-FNPDVLTLDVEMPRMDGLDFLEKLMRLRP-MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLG 111 (349)
T ss_dssp EESSHHHHHHHHHH-HCCSEEEEECCCSSSCHHHHHHHHHHSSC-CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred EeCCHHHHHHHHhc-cCCCEEEEECCCCCCCHHHHHHHHHhcCC-CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCc
Confidence 46789999999987 68999999999999999999999998887 999999998775 447889999999999999984
Q ss_pred ---------HHHHHHHHHHHHHh
Q 043479 80 ---------DDLKNVWQYAMTYK 93 (534)
Q Consensus 80 ---------eeL~~aI~~aL~~k 93 (534)
++|...|+.+.+.+
T Consensus 112 ~~~~l~~~~~~L~~~I~~~~~~~ 134 (349)
T 1a2o_A 112 IREGMLAYSEMIAEKVRTAARAR 134 (349)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCC
T ss_pred cchhHHHHHHHHHHHHHHHHhhh
Confidence 78888888876543
No 107
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.08 E-value=5.3e-11 Score=103.66 Aligned_cols=87 Identities=11% Similarity=0.154 Sum_probs=73.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe-cCCCHHHHHHHHHcCCcEEEeCCCChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMS-SDDRESVIMKALASGVAFYILKPLNPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLS-s~~d~~~~~~AL~aGA~dyL~KP~s~e 80 (534)
.+.++.+|++.++....||+||+|+.||+++|+++++.|++..+.+|||++| +..+... .+++ +++||.||++.+
T Consensus 44 ~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~ 119 (138)
T 2b4a_A 44 VHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAIS 119 (138)
T ss_dssp EESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHH
T ss_pred EeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHH
Confidence 4678999999886413699999999999999999999999988899999999 8776665 5555 999999999999
Q ss_pred HHHHHHHHHHHH
Q 043479 81 DLKNVWQYAMTY 92 (534)
Q Consensus 81 eL~~aI~~aL~~ 92 (534)
+|..+|+++++.
T Consensus 120 ~L~~~i~~~~~~ 131 (138)
T 2b4a_A 120 ELRAAIDYHKPS 131 (138)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=98.99 E-value=4.4e-10 Score=110.73 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=65.5
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHH
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDL 82 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL 82 (534)
+.++.+++..+.. ..||+||+|+.||+++|+++++++++. .+|||++|+..+.+...+++++||++||.||... .+
T Consensus 34 ~~~~~~~~~~~~~-~~~dlvllD~~mP~~~G~~~~~~lr~~--~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~-~~ 109 (259)
T 3luf_A 34 AFDTLEGARHCQG-DEYVVALVDLTLPDAPSGEAVKVLLER--GLPVVILTADISEDKREAWLEAGVLDYVMKDSRH-SL 109 (259)
T ss_dssp EESSTGGGTTCCT-TTEEEEEEESCBTTBTTSHHHHHHHHT--TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHH-HH
T ss_pred EeChHHHHHHhhc-CCCcEEEEeCCCCCCCHHHHHHHHHhC--CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchh-HH
Confidence 3445555555544 679999999999999999999999874 5899999999999999999999999999999643 34
Q ss_pred HHHHHH
Q 043479 83 KNVWQY 88 (534)
Q Consensus 83 ~~aI~~ 88 (534)
..++..
T Consensus 110 ~~~~~~ 115 (259)
T 3luf_A 110 QYAVGL 115 (259)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 434433
No 109
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.96 E-value=6.2e-10 Score=105.42 Aligned_cols=90 Identities=24% Similarity=0.355 Sum_probs=78.9
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC--CChH
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKP--LNPD 80 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP--~s~e 80 (534)
+.++.+|++.+.. ..|||||+|+.||+++|++++++|++..+..++++++.....+...++++.|+++|+.|| ++..
T Consensus 11 ~~~~~~a~~~~~~-~~~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~ 89 (237)
T 3cwo_X 11 ATNGREAVEKYKE-LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENP 89 (237)
T ss_dssp CCSSSTTHHHHHH-HCCSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESHHHHHCT
T ss_pred CCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCCcccChH
Confidence 5678899999887 679999999999999999999999988877788888877778888999999999999999 7788
Q ss_pred HHHHHHHHHHHHh
Q 043479 81 DLKNVWQYAMTYK 93 (534)
Q Consensus 81 eL~~aI~~aL~~k 93 (534)
++...+.+.+...
T Consensus 90 ~l~~~i~~~~~~~ 102 (237)
T 3cwo_X 90 SLITQIAQTFGSQ 102 (237)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHhCCC
Confidence 8888888776443
No 110
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=98.92 E-value=8.6e-10 Score=125.07 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=82.7
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCC----CCHHHHHHHHHhhCCCCcEEEEecCCC-HHHHHHHHHcCCcEEEeCC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPE----MNGIELQKEINEEFTHLPVMVMSSDDR-ESVIMKALASGVAFYILKP 76 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPd----mdGleLL~~Lr~~~p~ipVIVLSs~~d-~~~~~~AL~aGA~dyL~KP 76 (534)
.+.++++|++.+.....+|+||+|++||+ ++|++++++||+..+++|||++|+..+ .+.....+..||++||.||
T Consensus 37 ~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~iR~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kp 116 (755)
T 2vyc_A 37 KSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWIL 116 (755)
T ss_dssp EESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHHHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETT
T ss_pred EECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHHHHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCC
Confidence 57899999999986235999999999999 999999999999988899999999876 6667788999999999999
Q ss_pred CChHH-HHHHHHHHHHHh
Q 043479 77 LNPDD-LKNVWQYAMTYK 93 (534)
Q Consensus 77 ~s~ee-L~~aI~~aL~~k 93 (534)
++..+ |...|++++++.
T Consensus 117 f~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 117 EDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 99999 888999988775
No 111
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.29 E-value=4.6e-06 Score=87.58 Aligned_cols=89 Identities=24% Similarity=0.421 Sum_probs=75.0
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+..+++ .+.. ..||+|++|+.||+|+|+++++.++.. ...+|||++|+..+.....++++.|+++|+.||+..++
T Consensus 182 ~~~~~~~-~~~~-~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~ 259 (459)
T 1w25_A 182 SDPEKAK-ISAG-GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQE 259 (459)
T ss_dssp CCHHHHH-HHHH-SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHH
T ss_pred cCHHHHh-hhcc-CCCCEEEEecCCCCCcHHHHHHHHHhCccccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHH
Confidence 3555554 2333 579999999999999999999999863 45689999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 043479 82 LKNVWQYAMTYKK 94 (534)
Q Consensus 82 L~~aI~~aL~~k~ 94 (534)
+...+..+++.+.
T Consensus 260 l~~~v~~~~~~~~ 272 (459)
T 1w25_A 260 LSARVKTQIQRKR 272 (459)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988888776544
No 112
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.74 E-value=0.049 Score=50.68 Aligned_cols=82 Identities=12% Similarity=0.229 Sum_probs=61.3
Q ss_pred CHHHHHHHHHhcCCceEEEEeC-CCCCCCHH--HHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE------eC
Q 043479 5 RPVEALATVRIQRDIDLVVTDL-HMPEMNGI--ELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI------LK 75 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi-~mPdmdGl--eLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL------~K 75 (534)
+..+.++.+......++++.++ .++.++|+ +++++++... ++|||++++....+...++++.|+++++ .+
T Consensus 131 ~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~~~~~i~~~~~~~-~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTTTCCSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcCCCeEEEEecCCCCccccccHHHHHHHHHhc-CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4556666665534567999987 55656664 4666666543 6999999999999999999999999995 68
Q ss_pred CCChHHHHHHHH
Q 043479 76 PLNPDDLKNVWQ 87 (534)
Q Consensus 76 P~s~eeL~~aI~ 87 (534)
|++..++++.++
T Consensus 210 ~~~~~~~~~~l~ 221 (237)
T 3cwo_X 210 EIDVRELKEYLK 221 (237)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 888888876543
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=95.46 E-value=0.0089 Score=67.53 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=67.2
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC-ChH
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL-NPD 80 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~-s~e 80 (534)
.+.+.+||+..+++...+++||+|++++ +.+++++||+..+++||++++...+...+......++++|+.+.. +.+
T Consensus 35 ~a~s~~Da~~~i~~~~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (715)
T 3n75_A 35 YPNDRDDLLKLIENNARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAE 111 (715)
T ss_dssp CCSSHHHHHHHHHHCTTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCHH
T ss_pred EeCCHHHHHHHHHhCCCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccchhhhhccCeEEEeCCCCHH
Confidence 5689999999998755699999999885 689999999999999999999885433221112357889998875 456
Q ss_pred HHHHHHHHHHHHh
Q 043479 81 DLKNVWQYAMTYK 93 (534)
Q Consensus 81 eL~~aI~~aL~~k 93 (534)
.+...|.++.+..
T Consensus 112 ~~~~~~~~~~~~y 124 (715)
T 3n75_A 112 DIANKIKQTTDEY 124 (715)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 114
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=91.74 E-value=0.42 Score=39.14 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=44.3
Q ss_pred chhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 043479 166 DSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAEQG 221 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~a~~~ 221 (534)
..|..+..+++...-.+....++|++.|+ ++..+|++|+.+-|..|++.....
T Consensus 36 ~~L~~~~r~vl~l~~~~g~s~~eIA~~lg---is~~tV~~~l~ra~~~Lr~~l~~~ 88 (92)
T 3hug_A 36 AQLSAEHRAVIQRSYYRGWSTAQIATDLG---IAEGTVKSRLHYAVRALRLTLQEL 88 (92)
T ss_dssp HTSCHHHHHHHHHHHTSCCCHHHHHHHHT---SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34888888999885455666899999999 999999999999999988876543
No 115
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=90.98 E-value=0.3 Score=40.63 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=38.9
Q ss_pred CchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q 043479 165 TDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLK 215 (534)
Q Consensus 165 t~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lk 215 (534)
...|+.+..+++..+ .+....++|++.|+ ++..+|+.|+.+.+..|+
T Consensus 25 l~~Lt~~e~~vl~l~-~~g~s~~eIA~~l~---is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 25 LSGLTDQERTLLGLL-SEGLTNKQIADRMF---LAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp --CCCHHHHHHHHHH-HTTCCHHHHHHHHT---CCHHHHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHH-HcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHc
Confidence 345899999999998 56666999999999 899999999988776543
No 116
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=90.77 E-value=0.31 Score=40.43 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=36.9
Q ss_pred CchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043479 165 TDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212 (534)
Q Consensus 165 t~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl 212 (534)
...|+.++.+++..+. +....++|++.|+ ++..+|+.|+.+.+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~-~G~s~~eIA~~L~---iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-KGFTNQEIADALH---LSKRSIEYSLTSIFN 70 (90)
T ss_dssp --CCCHHHHHHHHHHH-TTCCHHHHHHHHT---CCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH-cCCCHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence 3569999999999997 4455999999999 999999999988655
No 117
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=90.69 E-value=0.36 Score=38.97 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=39.9
Q ss_pred CCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q 043479 164 WTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLK 215 (534)
Q Consensus 164 Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lk 215 (534)
....|++++.+++..+ .+....++|++.|+ ++..+|+.|+.+.+..|+
T Consensus 18 ~~~~Lt~~e~~vl~l~-~~g~s~~eIA~~l~---is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 18 DVNQLTPRERDILKLI-AQGLPNKMIARRLD---ITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp CGGGSCHHHHHHHHHH-TTTCCHHHHHHHHT---SCHHHHHHHHHHHHHHTT
T ss_pred HHccCCHHHHHHHHHH-HcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHc
Confidence 4456999999999998 45566999999999 899999999988766443
No 118
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=89.91 E-value=2.2 Score=38.87 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=59.7
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCC-C-CHHHHHHHHHhhC-CCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPE-M-NGIELQKEINEEF-THLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPd-m-dGleLL~~Lr~~~-p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
+.++.++.+++ ..+|+|.+-..+.. + .--++++.|++.. ++++|++ .+..-......+.+.|++.++..-.+.++
T Consensus 57 p~e~lv~aa~~-~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~ 134 (161)
T 2yxb_A 57 TPEQVAMAAVQ-EDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGE 134 (161)
T ss_dssp CHHHHHHHHHH-TTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHH
T ss_pred CHHHHHHHHHh-cCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHH
Confidence 56788888887 78999999877653 2 2345666777654 3677665 44444444445678999987766566677
Q ss_pred HHHHHHHHHHHhh
Q 043479 82 LKNVWQYAMTYKK 94 (534)
Q Consensus 82 L~~aI~~aL~~k~ 94 (534)
....++.++..++
T Consensus 135 ~~~~~~~~~~~~~ 147 (161)
T 2yxb_A 135 IIEKVRKLAEEKR 147 (161)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776543
No 119
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=89.71 E-value=1.2 Score=43.90 Aligned_cols=80 Identities=16% Similarity=0.332 Sum_probs=55.7
Q ss_pred HHHHHhcCCceEEEEeCCCCC--CC--------------------HHHHHHHHHhhCCCCcEEEEecCCC------HHHH
Q 043479 10 LATVRIQRDIDLVVTDLHMPE--MN--------------------GIELQKEINEEFTHLPVMVMSSDDR------ESVI 61 (534)
Q Consensus 10 Le~L~~~~~pDLVLLDi~mPd--md--------------------GleLL~~Lr~~~p~ipVIVLSs~~d------~~~~ 61 (534)
++.+.+ ...|+|.+++-..+ .| .+++++++|+..|++|+++++-... ...+
T Consensus 37 ~~~l~~-~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~ 115 (262)
T 2ekc_A 37 FKEVLK-NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFC 115 (262)
T ss_dssp HHHHHH-TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHH
T ss_pred HHHHHH-cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHH
Confidence 334444 56899999875433 22 3466888888766899999853321 3456
Q ss_pred HHHHHcCCcEEEeCCCChHHHHHHHHHHH
Q 043479 62 MKALASGVAFYILKPLNPDDLKNVWQYAM 90 (534)
Q Consensus 62 ~~AL~aGA~dyL~KP~s~eeL~~aI~~aL 90 (534)
..+.++|+++++.-.+..+++...+..+.
T Consensus 116 ~~~~~aG~dgvii~dl~~ee~~~~~~~~~ 144 (262)
T 2ekc_A 116 RLSREKGIDGFIVPDLPPEEAEELKAVMK 144 (262)
T ss_dssp HHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 77889999999998888888766665543
No 120
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=88.43 E-value=0.81 Score=35.20 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=38.6
Q ss_pred CCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q 043479 164 WTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFL 214 (534)
Q Consensus 164 Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~l 214 (534)
....|+++..+++..+ .+....++|++.|+ ++..+|..|+.+.+..+
T Consensus 8 ~~~~L~~~e~~il~~~-~~g~s~~eIA~~l~---is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 8 SKPLLTKREREVFELL-VQDKTTKEIASELF---ISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCCCHHHHHHHHHH-TTTCCHHHHHHHHT---SCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-HcCCCHHHHHHHHC---CCHHHHHHHHHHHHHHH
Confidence 3456889999999998 45556899999999 89999999998876644
No 121
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=87.91 E-value=0.75 Score=36.00 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=38.4
Q ss_pred chhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q 043479 166 DSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLK 215 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lk 215 (534)
..|+++..+++..+ .+....++|++.|+ ++..+|..|+.+.+..++
T Consensus 15 ~~L~~~e~~vl~l~-~~g~s~~eIA~~l~---is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 15 QTLSERERQVLSAV-VAGLPNKSIAYDLD---ISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHHCHHHHHHHHHH-TTTCCHHHHHHHTT---SCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHH-HcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHc
Confidence 45889999999998 56666899999999 899999999988766443
No 122
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=87.78 E-value=0.77 Score=38.80 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=36.6
Q ss_pred chhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 043479 166 DSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIF 213 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~ 213 (534)
..|++++.+++..+. +....++|++.|+ ++..+|+.|+.+.+..
T Consensus 33 ~~Lt~re~~Vl~l~~-~G~s~~EIA~~L~---iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA-EGFLVTEIAKKLN---RSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSCCHHHHHHHHHHH-HTCCHHHHHHHHT---SCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-cCCCHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 458999999998885 4445899999999 8999999998876553
No 123
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=87.70 E-value=1.8 Score=42.63 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=56.5
Q ss_pred HHHHHHhcCCceEEEEeCCCCC--CC--------------------HHHHHHHHHhhCCCCcEEEEecCC------CHHH
Q 043479 9 ALATVRIQRDIDLVVTDLHMPE--MN--------------------GIELQKEINEEFTHLPVMVMSSDD------RESV 60 (534)
Q Consensus 9 ALe~L~~~~~pDLVLLDi~mPd--md--------------------GleLL~~Lr~~~p~ipVIVLSs~~------d~~~ 60 (534)
.++.+.+ ...|+|-+|+-..+ +| ++++++++|+...++||++++-.. ....
T Consensus 36 ~~~~l~~-~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~ 114 (268)
T 1qop_A 36 IIDTLID-AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAF 114 (268)
T ss_dssp HHHHHHH-TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHH
T ss_pred HHHHHHH-CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHH
Confidence 3444444 56899999984432 33 346688888775679998876322 1466
Q ss_pred HHHHHHcCCcEEEeCCCChHHHHHHHHHHH
Q 043479 61 IMKALASGVAFYILKPLNPDDLKNVWQYAM 90 (534)
Q Consensus 61 ~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL 90 (534)
+..+.++|+++++.-.+..+++...+..+.
T Consensus 115 ~~~~~~aGadgii~~d~~~e~~~~~~~~~~ 144 (268)
T 1qop_A 115 YARCEQVGVDSVLVADVPVEESAPFRQAAL 144 (268)
T ss_dssp HHHHHHHTCCEEEETTCCGGGCHHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 778999999999998888887776665553
No 124
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=87.52 E-value=0.56 Score=45.13 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=37.2
Q ss_pred chhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043479 166 DSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl 212 (534)
..|++++.+++..+..++. .|+|++.|+ +|..||+.|+.+.+.
T Consensus 174 ~~Lt~re~~vl~~~~~G~s-~~eIa~~l~---is~~tV~~~~~~~~~ 216 (237)
T 3szt_A 174 VRLTARETEMLKWTAVGKT-YGEIGLILS---IDQRTVKFHIVNAMR 216 (237)
T ss_dssp CCCCHHHHHHHHHHHTTCC-HHHHHHHHT---SCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCC-HHHHHHHHC---CCHHHHHHHHHHHHH
Confidence 4599999999999964444 999999999 999999999988755
No 125
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=87.21 E-value=1.7 Score=43.23 Aligned_cols=83 Identities=12% Similarity=0.235 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCC--CCH--------------------HHHHHHHHhhCCCCcEEEEecCCC------H
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPE--MNG--------------------IELQKEINEEFTHLPVMVMSSDDR------E 58 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPd--mdG--------------------leLL~~Lr~~~p~ipVIVLSs~~d------~ 58 (534)
.+.++.+.+ ...|+|=+++-..| +|| +++++++|+...++||++|+-... .
T Consensus 35 ~~~~~~l~~-~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e 113 (267)
T 3vnd_A 35 LKIIQTLVD-NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGID 113 (267)
T ss_dssp HHHHHHHHH-TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHH
T ss_pred HHHHHHHHH-cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHH
Confidence 344555555 56899988864422 333 677777887767899999875332 4
Q ss_pred HHHHHHHHcCCcEEEeCCCChHHHHHHHHHHH
Q 043479 59 SVIMKALASGVAFYILKPLNPDDLKNVWQYAM 90 (534)
Q Consensus 59 ~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL 90 (534)
..+.++.++|+++++.-.+.+++....+..+.
T Consensus 114 ~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~ 145 (267)
T 3vnd_A 114 EFYTKAQAAGVDSVLIADVPVEESAPFSKAAK 145 (267)
T ss_dssp HHHHHHHHHTCCEEEETTSCGGGCHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHH
Confidence 56888999999999998888888666555543
No 126
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=87.21 E-value=0.46 Score=38.91 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=38.9
Q ss_pred CCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q 043479 164 WTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFL 214 (534)
Q Consensus 164 Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~l 214 (534)
+...|+.+..+++..+ .+....++|++.|+ ++..+|+.|+.+.+..|
T Consensus 26 ~l~~Lt~~e~~vl~l~-~~g~s~~eIA~~l~---is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 26 LYEMLTEREMEILLLI-AKGYSNQEIASASH---ITIKTVKTHVSNILSKL 72 (91)
T ss_dssp TGGGCCSHHHHHHHHH-HTTCCTTHHHHHHT---CCHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHH-HcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHH
Confidence 4456899999999998 45556899999999 89999999998876644
No 127
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=86.90 E-value=0.78 Score=34.18 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=31.0
Q ss_pred HHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q 043479 171 RFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFL 214 (534)
Q Consensus 171 RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~l 214 (534)
++.+++..+. +....++|++.|+ ++..+|+.|+.+.+..+
T Consensus 2 re~~vl~l~~-~g~s~~eIA~~l~---is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 2 RERQVLKLID-EGYTNHGISEKLH---ISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHHHH-TSCCSHHHHHHTC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 4567777764 3445899999999 89999999998876643
No 128
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=86.56 E-value=1.9 Score=37.20 Aligned_cols=66 Identities=26% Similarity=0.407 Sum_probs=51.7
Q ss_pred CceEEEEeCCC-CCCCHHHHHHHHH--hhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHHHHH
Q 043479 18 DIDLVVTDLHM-PEMNGIELQKEIN--EEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 18 ~pDLVLLDi~m-PdmdGleLL~~Lr--~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL~~ 92 (534)
..|+|+|+..+ |. .+. +..+..-+||+-..-+++.+.+.+..||. ||.+|+++.-|..+|+..++.
T Consensus 50 ~AdlIfCEYlLLPe--------~ifS~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 50 SADLVVCEYSLLPR--------EIRSPKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp TEEEEEEEGGGSCT--------TCCCCTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred cceeEEEeeecChH--------HhcCCCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 35888888754 32 111 22344678888888899999999999999 999999999999999998864
No 129
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=86.53 E-value=1.2 Score=33.74 Aligned_cols=51 Identities=16% Similarity=0.001 Sum_probs=40.4
Q ss_pred chhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 043479 166 DSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAE 219 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~a~ 219 (534)
..|+++..+++...-.+....++|++.|+ ++..+|..++.+.+..+++...
T Consensus 14 ~~L~~~~r~il~l~~~~g~s~~eIA~~lg---is~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLGLSYADAAAVCG---CPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp TSSCHHHHHHHHHHHTSCCCHHHHHHHHT---SCHHHHHHHHHHHHHHHHC---
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHHHhh
Confidence 34778888888876455666899999999 8999999999999888776554
No 130
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=86.39 E-value=0.88 Score=43.44 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=37.7
Q ss_pred chhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 043479 166 DSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIF 213 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~ 213 (534)
..|++++.+++..+. +....++|++.|+ ++..||+.|+.+.+..
T Consensus 174 ~~Lt~~e~~vl~~~~-~g~s~~eIa~~l~---is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 174 QMLSPREMLCLVWAS-KGKTASVTANLTG---INARTVQHYLDKARAK 217 (236)
T ss_dssp GSCCHHHHHHHHHHH-TTCCHHHHHHHHC---CCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-cCCCHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 459999999999986 4445999999998 9999999999887664
No 131
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=86.32 E-value=0.91 Score=43.29 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=37.7
Q ss_pred chhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 043479 166 DSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIF 213 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~ 213 (534)
..|++++.+++..+. +....++|++.|+ ++..||+.|+.+.+..
T Consensus 172 ~~Lt~~e~~vl~~~~-~g~s~~eIa~~l~---is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 172 AWLDPKEATYLRWIA-VGKTMEEIADVEG---VKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCHHHHHHHHHHT-TTCCHHHHHHHHT---CCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-cCCCHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 459999999999986 4445999999998 9999999999987664
No 132
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=85.97 E-value=1.8 Score=37.26 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=44.2
Q ss_pred chhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 043479 166 DSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAEQG 221 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~a~~~ 221 (534)
..|+++..+++...-.+....++|++.|+ ++..+|+.|+.+-|..|++.....
T Consensus 24 ~~L~~~~r~vl~l~~~~g~s~~EIA~~lg---iS~~tV~~~l~ra~~kLr~~l~~~ 76 (113)
T 1xsv_A 24 SLLTNKQRNYLELFYLEDYSLSEIADTFN---VSRQAVYDNIRRTGDLVEDYEKKL 76 (113)
T ss_dssp GGSCHHHHHHHHHHHTSCCCHHHHHHHTT---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888999887556666899999999 899999999999999888776543
No 133
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=85.80 E-value=1.2 Score=34.29 Aligned_cols=48 Identities=17% Similarity=0.075 Sum_probs=39.5
Q ss_pred chhhHHHHHHHHHhc----cCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 043479 166 DSLHNRFLQAIRHIG----LEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216 (534)
Q Consensus 166 ~eLh~RFleaLe~LG----lekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr 216 (534)
..|+++..+++...- .+....++|++.|+ +|..+|+.|+.+-+..++.
T Consensus 4 ~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lg---is~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFD---VTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHT---CCHHHHHHHHHHHHHGGGS
T ss_pred HcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHH
Confidence 458889999998874 46777999999999 9999999999887765543
No 134
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=84.68 E-value=1.7 Score=37.67 Aligned_cols=51 Identities=6% Similarity=0.051 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 043479 167 SLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAEQG 221 (534)
Q Consensus 167 eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~a~~~ 221 (534)
.|+++..+++. +-++....++|++.|+ +|..+|++++.+-|..|++.....
T Consensus 109 ~L~~~~r~v~~-~~~~g~s~~EIA~~lg---is~~tV~~~~~ra~~~Lr~~l~~~ 159 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRGYSYREIATILS---KNLKSIDNTIQRIRKKSEEWIKEE 159 (164)
T ss_dssp HSCHHHHHHHH-HHTTTCCHHHHHHHHT---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcCCCHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHc
Confidence 57788888888 5556667999999999 999999999999999988877653
No 135
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=84.52 E-value=3.4 Score=39.43 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=52.5
Q ss_pred HHHHHHhcCCceEEEEeCC--CCCCCH--------------------HHHHHHHHhhCCCCcEEEEecCCC------HHH
Q 043479 9 ALATVRIQRDIDLVVTDLH--MPEMNG--------------------IELQKEINEEFTHLPVMVMSSDDR------ESV 60 (534)
Q Consensus 9 ALe~L~~~~~pDLVLLDi~--mPdmdG--------------------leLL~~Lr~~~p~ipVIVLSs~~d------~~~ 60 (534)
.++.+.+ . .|.|-+|+- -|.+|| +++++++++.. ++||++++.... .+.
T Consensus 24 ~a~~~~~-~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~~~~ 100 (248)
T 1geq_A 24 FLLALDE-Y-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHS-STPIVLMTYYNPIYRAGVRNF 100 (248)
T ss_dssp HHHHHGG-G-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTC-CCCEEEEECHHHHHHHCHHHH
T ss_pred HHHHHHH-c-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhC-CCCEEEEeccchhhhcCHHHH
Confidence 3344444 5 888888842 234554 67788888764 589988874332 467
Q ss_pred HHHHHHcCCcEEEeCCCChHHHHHHHHHH
Q 043479 61 IMKALASGVAFYILKPLNPDDLKNVWQYA 89 (534)
Q Consensus 61 ~~~AL~aGA~dyL~KP~s~eeL~~aI~~a 89 (534)
+..++++||+.++.-....++....++.+
T Consensus 101 ~~~~~~~Gad~v~~~~~~~~~~~~~~~~~ 129 (248)
T 1geq_A 101 LAEAKASGVDGILVVDLPVFHAKEFTEIA 129 (248)
T ss_dssp HHHHHHHTCCEEEETTCCGGGHHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCChhhHHHHHHHH
Confidence 78899999999999777666655544443
No 136
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=84.46 E-value=3.3 Score=41.27 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCceEEEEeCCCCC--CC--------------------HHHHHHHHHhhCCCCcEEEEecC------CCHH
Q 043479 8 EALATVRIQRDIDLVVTDLHMPE--MN--------------------GIELQKEINEEFTHLPVMVMSSD------DRES 59 (534)
Q Consensus 8 EALe~L~~~~~pDLVLLDi~mPd--md--------------------GleLL~~Lr~~~p~ipVIVLSs~------~d~~ 59 (534)
+.++.+.+ ...|+|=+.+-..| .| .+++++++|+..+++||++|+-. .-..
T Consensus 38 ~~~~~l~~-~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~ 116 (271)
T 3nav_A 38 AIMQTLID-AGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDD 116 (271)
T ss_dssp HHHHHHHH-TTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHH
T ss_pred HHHHHHHH-cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHH
Confidence 33444444 46898888764422 22 35677888877678999999733 2245
Q ss_pred HHHHHHHcCCcEEEeCCCChHHHHHHHHHH
Q 043479 60 VIMKALASGVAFYILKPLNPDDLKNVWQYA 89 (534)
Q Consensus 60 ~~~~AL~aGA~dyL~KP~s~eeL~~aI~~a 89 (534)
.+.+|.++|++++|.-.+.+++....+..+
T Consensus 117 f~~~~~~aGvdGvIipDlp~ee~~~~~~~~ 146 (271)
T 3nav_A 117 FYQRCQKAGVDSVLIADVPTNESQPFVAAA 146 (271)
T ss_dssp HHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 688899999999999888888865554444
No 137
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=83.80 E-value=1.1 Score=44.11 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=38.0
Q ss_pred chhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 043479 166 DSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIF 213 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~ 213 (534)
..|+.++.+++..+. +....++|++.|+ ++..||+.|+.+.+..
T Consensus 196 ~~Lt~re~~vl~~~~-~G~s~~eIA~~l~---is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 196 MPLSQREYDIFHWMS-RGKTNWEIATILN---ISERTVKFHVANVIRK 239 (265)
T ss_dssp CCCCHHHHHHHHHHH-TTCCHHHHHHHHT---SCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-cCCCHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 469999999999996 4445999999999 9999999999887663
No 138
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=83.20 E-value=2.5 Score=36.41 Aligned_cols=52 Identities=12% Similarity=0.154 Sum_probs=43.1
Q ss_pred chhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 043479 166 DSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAEQ 220 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~a~~ 220 (534)
..|+++..+++...-.+....++|++.|+ +|..+|..|+.+-|..+++....
T Consensus 21 ~~L~~~~r~vl~l~y~~g~s~~EIA~~lg---iS~~tV~~~l~ra~~kLr~~l~~ 72 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADDYSLAEIADEFG---VSRQAVYDNIKRTEKILETYEMK 72 (113)
T ss_dssp GGSCHHHHHHHHHHHHTCCCHHHHHHHHT---CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888999887445566899999999 99999999999999888876544
No 139
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=82.86 E-value=5.5 Score=38.88 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=59.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCC-------CCHHHHHHHHHhhC-CCCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPE-------MNGIELQKEINEEF-THLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPd-------mdGleLL~~Lr~~~-p~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
++.+.+|+.+..+ ..+|.|.+.-..|. .-|++.++++++.. .++||+.+.+- +.+.+.+++++||+++.
T Consensus 141 S~ht~~Ea~~A~~--~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gva 217 (243)
T 3o63_A 141 STHDPDQVAAAAA--GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIV 217 (243)
T ss_dssp EECSHHHHHHHHH--SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEE
T ss_pred eCCCHHHHHHHhh--CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEE
Confidence 4678888877665 46899998654432 24788888888753 47999999877 66778889999999986
Q ss_pred e-----CCCChHHHHHHHHHH
Q 043479 74 L-----KPLNPDDLKNVWQYA 89 (534)
Q Consensus 74 ~-----KP~s~eeL~~aI~~a 89 (534)
. +.-++.+..+.+...
T Consensus 218 v~sai~~a~dp~~a~~~l~~~ 238 (243)
T 3o63_A 218 VVRAITSADDPRAAAEQLRSA 238 (243)
T ss_dssp ESHHHHTCSSHHHHHHHHHHH
T ss_pred EeHHHhCCCCHHHHHHHHHHH
Confidence 5 444555544444443
No 140
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=82.73 E-value=1.1 Score=43.38 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=40.7
Q ss_pred chhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 043479 166 DSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr 216 (534)
..|+++..+++... .+....++|++.|+ ++..+|++|+.+.|..|+.
T Consensus 196 ~~L~~~erevl~L~-~~G~s~~EIA~~L~---iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCI-RKGLSSKEIAATLY---ISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHH-HTTCCHHHHHHHHT---CCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHH-HcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHcC
Confidence 45999999999998 57777999999999 9999999999998876543
No 141
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=82.59 E-value=3.7 Score=39.67 Aligned_cols=70 Identities=11% Similarity=0.194 Sum_probs=53.6
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCC------CCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLH------MPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~------mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
.+.+.+++.+..+ ..+|+|.+..+ ......+++++++++. ++|||.-.+-.+.+.+.+++++||++++.=
T Consensus 135 ~v~t~eea~~a~~--~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 135 DCSTVNEGISCHQ--KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA--GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp ECSSHHHHHHHHH--TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT--TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred ecCCHHHHHHHHh--CCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 3567788877665 46898865322 1234568999999875 799999988889999999999999999863
No 142
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=82.55 E-value=3.1 Score=32.32 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=39.9
Q ss_pred CchhhHHHHHHHHHhcc----CCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q 043479 165 TDSLHNRFLQAIRHIGL----EKAVPKKILEFMNVPGLTRENVASHLQKYRIFLK 215 (534)
Q Consensus 165 t~eLh~RFleaLe~LGl----ekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lk 215 (534)
-..|+++..+++...-. +....++|++.|+ +|..+|+.|+.+-+..++
T Consensus 8 l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~---is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 8 LSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFG---VTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHT---CCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHC---CCHHHHHHHHHHHHHHHH
Confidence 34588899999988743 5667899999999 999999999998877666
No 143
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=82.10 E-value=2.9 Score=41.51 Aligned_cols=80 Identities=24% Similarity=0.271 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCceEEEEeCCCCC--CC--------------------HHHHHHHHHhhCCCCcEEEEecCC------CHH
Q 043479 8 EALATVRIQRDIDLVVTDLHMPE--MN--------------------GIELQKEINEEFTHLPVMVMSSDD------RES 59 (534)
Q Consensus 8 EALe~L~~~~~pDLVLLDi~mPd--md--------------------GleLL~~Lr~~~p~ipVIVLSs~~------d~~ 59 (534)
+.++.+.+ . .|+|.+++-..| .| .+++++++|+. .++||++|+-.. ...
T Consensus 34 ~~~~~l~~-~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~-~~~Pii~m~y~n~v~~~g~~~ 110 (271)
T 1ujp_A 34 QAVEEVLP-Y-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL-TEKPLFLMTYLNPVLAWGPER 110 (271)
T ss_dssp HHHHHHGG-G-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CCSCEEEECCHHHHHHHCHHH
T ss_pred HHHHHHHh-c-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCEEEEecCcHHHHhhHHH
Confidence 34455555 5 999999875432 12 35678888877 679999984222 134
Q ss_pred HHHHHHHcCCcEEEeCCCChHHHHHHHHHHH
Q 043479 60 VIMKALASGVAFYILKPLNPDDLKNVWQYAM 90 (534)
Q Consensus 60 ~~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL 90 (534)
.+..+.++|++++|.-.+..+++...+..+.
T Consensus 111 f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~ 141 (271)
T 1ujp_A 111 FFGLFKQAGATGVILPDLPPDEDPGLVRLAQ 141 (271)
T ss_dssp HHHHHHHHTCCEEECTTCCGGGCHHHHHHHH
T ss_pred HHHHHHHcCCCEEEecCCCHHHHHHHHHHHH
Confidence 5677899999999998888877766665543
No 144
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=82.06 E-value=7 Score=36.04 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=49.2
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCCC-------CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMPE-------MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mPd-------mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+.+..|+.+... ..+|.|+++...|. ..+++.++++++.. ++||++..+-. .+.+.++++.|++++..
T Consensus 115 ~~t~~e~~~~~~--~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 115 VYSLEEALEAEK--KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV-KIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp ESSHHHHHHHHH--HTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC-SSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred cCCHHHHHHHHh--cCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC-CCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 567777766544 35899998754442 35788888888765 58988776665 67777888999999853
No 145
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=81.88 E-value=7.7 Score=36.37 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=50.2
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCC-------CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPE-------MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPd-------mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.+.+++.+... ...|.|+++...+. .-+++.++.+++.. ++||++..+- +.+.+.+++++||+++..
T Consensus 116 sv~t~~~~~~a~~--~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~-~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 116 SVHSLEEAVQAEK--EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI-SIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp EECSHHHHHHHHH--TTCSEEEEECCC----------CHHHHHHHHHHHC-CSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred EcCCHHHHHHHHh--CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 4567788776665 45899999764332 23678888887655 5898887777 788888999999998864
No 146
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=81.21 E-value=2.6 Score=37.98 Aligned_cols=50 Identities=20% Similarity=0.166 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 043479 167 SLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAE 219 (534)
Q Consensus 167 eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~a~ 219 (534)
.|+++..+++...-.+....++|++.|+ ++..+|++++.+-|..|++...
T Consensus 140 ~L~~~~r~vl~l~~~~g~s~~EIA~~lg---is~~tV~~~l~ra~~~Lr~~l~ 189 (194)
T 1or7_A 140 SLPEDLRMAITLRELDGLSYEEIAAIMD---CPVGTVRSRIFRAREAIDNKVQ 189 (194)
T ss_dssp HSCHHHHHHHHHHHTTCCCHHHHHHHTT---SCHHHHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHhHHHHHcCCCHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888775455666899999999 9999999999999998887654
No 147
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=81.19 E-value=6.5 Score=38.65 Aligned_cols=81 Identities=10% Similarity=0.134 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHHHH
Q 043479 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE-FTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLKNV 85 (534)
Q Consensus 8 EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~-~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~~a 85 (534)
+.++.+.. ..+|.|++|++....+.-++...++.. ...++++|=....+...+..+++.|+++++ +|--+.+++..+
T Consensus 28 ~~~e~a~~-~g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~~ld~G~~gI~lP~v~saed~~~~ 106 (261)
T 3qz6_A 28 DIVRIYAE-AGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAETMRET 106 (261)
T ss_dssp THHHHHHH-TTCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHHHHTCCEEEETTCCSHHHHHHH
T ss_pred HHHHHHhc-CCcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHhcCCCEEEECCcCCHHHHHHH
Confidence 44555554 579999999998777766666666542 223566666666777888899999999876 555678888877
Q ss_pred HHHH
Q 043479 86 WQYA 89 (534)
Q Consensus 86 I~~a 89 (534)
++.+
T Consensus 107 ~~~~ 110 (261)
T 3qz6_A 107 VRLA 110 (261)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6655
No 148
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=79.41 E-value=5.7 Score=38.37 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=52.6
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCC------CCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLH------MPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~------mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+.+.+++.+..+ ..+|+|.+..+ ......+++++++++. ++|||.-.+-.+.+.+.+++++||++++.=
T Consensus 136 v~t~eea~~a~~--~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 136 CSSVDDGLACQR--LGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA--GCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp CCSHHHHHHHHH--TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHh--CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 567778777665 46898864322 1234568999999876 799999888888999999999999999763
No 149
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=77.52 E-value=2.8 Score=33.86 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=39.0
Q ss_pred chhhHHHHHHHHHhcc----CCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 043479 166 DSLHNRFLQAIRHIGL----EKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216 (534)
Q Consensus 166 ~eLh~RFleaLe~LGl----ekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr 216 (534)
..|+++..+++...-. +....++|++.|+ +|..+|++|+.+-+..|+.
T Consensus 17 ~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lg---is~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFN---VTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHT---CCHHHHHHHHHHHHHHHBT
T ss_pred HhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHC---CCHHHHHHHHHHHHHHHHH
Confidence 4588888899888633 5566899999999 9999999999887776554
No 150
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=77.21 E-value=1.4 Score=39.38 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=44.4
Q ss_pred CchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 043479 165 TDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAEQ 220 (534)
Q Consensus 165 t~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~a~~ 220 (534)
-..|+++..+++...-.+....++|++.|+ ++..+|+++|.+-|..|++....
T Consensus 91 l~~Lp~~~r~vl~L~~~~g~s~~EIA~~lg---is~~tV~~~l~rar~~Lr~~l~~ 143 (157)
T 2lfw_A 91 LARMTPLSRQALLLTAMEGFSPEDAAYLIE---VDTSEVETLVTEALAEIEKQTRA 143 (157)
T ss_dssp TTTSCTTHHHHHTTTSSSCCCHHHHHHTTT---SCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHhCCHHHHHHHHHHHHcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHHHHHh
Confidence 345888888998887666777999999999 89999999999999988876544
No 151
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=77.15 E-value=9.8 Score=33.49 Aligned_cols=86 Identities=8% Similarity=-0.084 Sum_probs=55.1
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCCCC-CC-HHHHHHHHHhhCC-CCcEEEEecC----CCHH-HHHHHHHcCCcEEEeC
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHMPE-MN-GIELQKEINEEFT-HLPVMVMSSD----DRES-VIMKALASGVAFYILK 75 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~mPd-md-GleLL~~Lr~~~p-~ipVIVLSs~----~d~~-~~~~AL~aGA~dyL~K 75 (534)
.+.++.++.+.+ ..+|+|.+-..+.. +. --++++.|++... +++|++=-.. .+.. ....+.+.|++.|+.-
T Consensus 41 ~p~e~~v~~a~~-~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~ 119 (137)
T 1ccw_A 41 SPQELFIKAAIE-TKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAP 119 (137)
T ss_dssp ECHHHHHHHHHH-HTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCT
T ss_pred CCHHHHHHHHHh-cCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECC
Confidence 367788888887 68999999887753 11 2346777776544 5666544322 1211 2445788999999876
Q ss_pred CCChHHHHHHHHHHH
Q 043479 76 PLNPDDLKNVWQYAM 90 (534)
Q Consensus 76 P~s~eeL~~aI~~aL 90 (534)
-.+..++...+...+
T Consensus 120 g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 120 GTPPEVGIADLKKDL 134 (137)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 667777766665543
No 152
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=76.92 E-value=19 Score=35.27 Aligned_cols=81 Identities=9% Similarity=0.033 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHHHH
Q 043479 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE-FTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLKNV 85 (534)
Q Consensus 8 EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~-~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~~a 85 (534)
+.++.+.. ..+|.|++|++-.-.+--++...++.. ....+++|=+...+...+..+++.|+++++ +|--+.++++.+
T Consensus 30 ~~~e~a~~-~GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~~~~ 108 (267)
T 2vws_A 30 YMAEIAAT-SGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQV 108 (267)
T ss_dssp HHHHHHHT-TCCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHHHHH
T ss_pred HHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHHHHH
Confidence 33455554 579999999977655555555555442 224667777777778888899999999865 555678887766
Q ss_pred HHHH
Q 043479 86 WQYA 89 (534)
Q Consensus 86 I~~a 89 (534)
++.+
T Consensus 109 ~~~~ 112 (267)
T 2vws_A 109 VSAT 112 (267)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5543
No 153
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=76.71 E-value=2.6 Score=39.10 Aligned_cols=85 Identities=13% Similarity=0.093 Sum_probs=54.9
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCCCC--CCHHHHHHHHHhhCCCCcEEE--EecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHMPE--MNGIELQKEINEEFTHLPVMV--MSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~mPd--mdGleLL~~Lr~~~p~ipVIV--LSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.+++++.++.. ...+-++++.++- .+|.++++.|++..++.||++ +........+..+.++||+.+..-+...
T Consensus 10 ~~~~~~~~~~~~~-~~~v~~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~ 88 (207)
T 3ajx_A 10 LSTEAALELAGKV-AEYVDIIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSAD 88 (207)
T ss_dssp SCHHHHHHHHHHH-GGGCSEEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CCHHHHHHHHHHh-hccCCEEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCC
Confidence 4678888888652 2223346776542 467889999998877788875 4332123347789999999998766554
Q ss_pred -HHHHHHHHHH
Q 043479 80 -DDLKNVWQYA 89 (534)
Q Consensus 80 -eeL~~aI~~a 89 (534)
+.+..+++.+
T Consensus 89 ~~~~~~~~~~~ 99 (207)
T 3ajx_A 89 DSTIAGAVKAA 99 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 4454444433
No 154
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=76.48 E-value=18 Score=35.97 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHHHH
Q 043479 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE-FTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLKNV 85 (534)
Q Consensus 8 EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~-~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~~a 85 (534)
+.++.+.. ..+|.|++|++-...+--++...++.. ....+++|=+...+...+..+++.|+++++ +|--+.+++..+
T Consensus 51 ~~~e~a~~-~GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~ 129 (287)
T 2v5j_A 51 YSAELLAG-AGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREA 129 (287)
T ss_dssp HHHHHHHT-SCCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHH
T ss_pred HHHHHHHh-CCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHH
Confidence 34455554 579999999977655555555555432 224678888888888888999999999865 555678887766
Q ss_pred HHHH
Q 043479 86 WQYA 89 (534)
Q Consensus 86 I~~a 89 (534)
++.+
T Consensus 130 ~~~~ 133 (287)
T 2v5j_A 130 VRAT 133 (287)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5543
No 155
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=76.39 E-value=10 Score=37.70 Aligned_cols=86 Identities=19% Similarity=0.121 Sum_probs=59.5
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCC-----CCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe--
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMP-----EMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL-- 74 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mP-----dmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~-- 74 (534)
++.++..|-++.. ..+++| +.+-.| +...+++++.|++. +++|||+=..-.+++.+..++++||+++++
T Consensus 142 ~~dd~~~akrl~~--~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~-~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgS 217 (265)
T 1wv2_A 142 TSDDPIIARQLAE--IGCIAV-MPLAGLIGSGLGICNPYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMNT 217 (265)
T ss_dssp ECSCHHHHHHHHH--SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEESH
T ss_pred eCCCHHHHHHHHH--hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 3455555555443 356777 443332 22347899999884 679999877888999999999999999874
Q ss_pred ---CCCChHHHHHHHHHHHH
Q 043479 75 ---KPLNPDDLKNVWQYAMT 91 (534)
Q Consensus 75 ---KP~s~eeL~~aI~~aL~ 91 (534)
|--++..+.+++..++.
T Consensus 218 AI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 218 AIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp HHHTSSSHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHH
Confidence 44456667766666554
No 156
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=76.23 E-value=4.9 Score=37.18 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 043479 167 SLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAE 219 (534)
Q Consensus 167 eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~a~ 219 (534)
.|+++..+++...-.+....++|++.|+ +|..+|+.++.+-|..|++...
T Consensus 187 ~L~~~~r~vl~l~~~~g~s~~EIA~~lg---is~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEELPAKEVAKILE---TSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHTT---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHHh
Confidence 4788888888886456666999999999 9999999999999998887654
No 157
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=74.99 E-value=7.6 Score=38.09 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=58.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCC----CC-CCHHHHHHHHHhhCCCCcEEE-EecCCCHHHHHHHHHcCCcEEEeCCCC
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHM----PE-MNGIELQKEINEEFTHLPVMV-MSSDDRESVIMKALASGVAFYILKPLN 78 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~m----Pd-mdGleLL~~Lr~~~p~ipVIV-LSs~~d~~~~~~AL~aGA~dyL~KP~s 78 (534)
+..+.++.+.+ ...|.+=+|+.- |. .-|.++++.||+..|+.|+.+ +-...-..++..+.++||+.+..-...
T Consensus 41 ~L~~~i~~l~~-~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea 119 (246)
T 3inp_A 41 RLGDDVKAVLA-AGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEA 119 (246)
T ss_dssp GHHHHHHHHHH-TTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGG
T ss_pred hHHHHHHHHHH-cCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEcccc
Confidence 45677888876 456666666543 33 348899999999887777765 333333456778889999988877655
Q ss_pred hHHHHHHHHHH
Q 043479 79 PDDLKNVWQYA 89 (534)
Q Consensus 79 ~eeL~~aI~~a 89 (534)
.+++.+.++.+
T Consensus 120 ~~~~~~~i~~i 130 (246)
T 3inp_A 120 SEHIDRSLQLI 130 (246)
T ss_dssp CSCHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 56676666666
No 158
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=74.60 E-value=7 Score=37.80 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=52.6
Q ss_pred cCHHHHHHHHHhc--CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 4 TRPVEALATVRIQ--RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 4 ss~~EALe~L~~~--~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++++...+.- ..+++|=+.++- -++++.++.|++.+|+ .+|-.-...+.+.+..+.++||.-.+.--++++-
T Consensus 22 ~~~~~a~~~a~al~~gGi~~iEvt~~t--~~a~~~I~~l~~~~p~-~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~ev 98 (217)
T 3lab_A 22 DDLVHAIPMAKALVAGGVHLLEVTLRT--EAGLAAISAIKKAVPE-AIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPEL 98 (217)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTT-SEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCC-CeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHH
Confidence 3455555444321 456666555554 5799999999999886 5666666678899999999999977664454443
Q ss_pred HH
Q 043479 82 LK 83 (534)
Q Consensus 82 L~ 83 (534)
+.
T Consensus 99 i~ 100 (217)
T 3lab_A 99 IE 100 (217)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 159
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=74.00 E-value=11 Score=35.00 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=46.5
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCC--------CCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMP--------EMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mP--------dmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+.+..|+.+... ..+|.|++....+ ...+++.++++++..+++||++..+-. .+.+.++++.|++++..
T Consensus 123 ~~t~~e~~~a~~--~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 123 AHTMSEVKQAEE--DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp ECSHHHHHHHHH--HTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEEE
T ss_pred cCCHHHHHHHHh--CCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEEE
Confidence 457777655544 3589998632222 123688888888765458988776665 66677788899999853
No 160
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=72.88 E-value=21 Score=34.64 Aligned_cols=80 Identities=9% Similarity=0.013 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhh-CCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHHHH
Q 043479 8 EALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEE-FTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLKNV 85 (534)
Q Consensus 8 EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~-~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~~a 85 (534)
+.++.+.. ..+|.|++|++-...+--++...++.. ....+++|=+...+...+..+++.|+++++ +|--+.+++..+
T Consensus 31 ~~~e~a~~-~gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~l~~g~~gI~~P~V~s~~ev~~~ 109 (256)
T 1dxe_A 31 ISTEVLGL-AGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELA 109 (256)
T ss_dssp HHHHHHTT-SCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHH
T ss_pred HHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHhcCCceeeecCcCCHHHHHHH
Confidence 34455544 579999999976644444444444332 234678888888888889999999999864 555678888655
Q ss_pred HHH
Q 043479 86 WQY 88 (534)
Q Consensus 86 I~~ 88 (534)
++.
T Consensus 110 ~~~ 112 (256)
T 1dxe_A 110 VAS 112 (256)
T ss_dssp HHT
T ss_pred HHH
Confidence 544
No 161
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.24 E-value=7 Score=30.90 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=42.5
Q ss_pred CccCCchhhHHHHHHHHHhccCC---CcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhhcc
Q 043479 161 KVAWTDSLHNRFLQAIRHIGLEK---AVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAEQGAS 223 (534)
Q Consensus 161 rv~Wt~eLh~RFleaLe~LGlek---AvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~a~~~~~ 223 (534)
+-.||.+=...|++++..+|.+. .-=+.|++.|. +-|...|+.|.++| |++..+.+..
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~--~Rt~~qcr~r~~~~---l~~~~k~g~~ 68 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG--NRTAKQVASQVQKY---FIKLTKAGIP 68 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS--SSCHHHHHHHHHHH---HGGGSTTCSC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC--CCCHHHHHHHHHHH---HHHHHhcCCC
Confidence 34699999999999999998543 22366888874 78999999997665 3344444433
No 162
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=70.78 E-value=26 Score=32.64 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=46.2
Q ss_pred CHHHHHHHHHhcCCceEEEE-eCCCCC---CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 5 RPVEALATVRIQRDIDLVVT-DLHMPE---MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLL-Di~mPd---mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+..+.++.+.+ ...|.|++ ++...+ .-.++.++++++.. ++||++..+..+.+.+.+++++||++++.
T Consensus 155 ~~~e~~~~~~~-~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~-~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 155 DAVKWAKEVEE-LGAGEILLTSIDRDGTGLGYDVELIRRVADSV-RIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp EHHHHHHHHHH-HTCSEEEEEETTTTTTCSCCCHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHh-CCCCEEEEecccCCCCcCcCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 34455555554 34776654 443211 12467888888764 68999888877778888889999999864
No 163
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=70.14 E-value=9.6 Score=32.08 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=40.2
Q ss_pred chhhHHHHHHHHHh-cc---CCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 043479 166 DSLHNRFLQAIRHI-GL---EKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAE 219 (534)
Q Consensus 166 ~eLh~RFleaLe~L-Gl---ekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~a~ 219 (534)
..|+++..+++... ++ +...-++|++.|+ +|..+|++++.+-+..|+....
T Consensus 18 ~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lg---iS~~tVr~~~~rAlkkLR~~~~ 72 (99)
T 3t72_q 18 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFD---VTRERIRQIEAKALRKLRHPSR 72 (99)
T ss_pred HcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888775 32 4566899999999 9999999999987777776554
No 164
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=69.95 E-value=12 Score=34.84 Aligned_cols=82 Identities=12% Similarity=0.139 Sum_probs=55.5
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCC-CCCHHHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCC-C-C
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMP-EMNGIELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYILKP-L-N 78 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mP-dmdGleLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP-~-s 78 (534)
+.+..|+.+..+ ..+|.|++ .| +..|++.++++++..+ ++||++..+-. .+.+.+++++||+++..=. + .
T Consensus 108 ~~t~~e~~~a~~--~G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vGsai~~ 181 (212)
T 2v82_A 108 CATATEAFTALE--AGAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWIDAGCAGAGLGSDLYR 181 (212)
T ss_dssp ECSHHHHHHHHH--TTCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHHHTCSEEEECTTTCC
T ss_pred cCCHHHHHHHHH--CCCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 457778776654 45899886 22 1236788888887766 68988877765 6777888899999997432 2 2
Q ss_pred h----HHHHHHHHHHH
Q 043479 79 P----DDLKNVWQYAM 90 (534)
Q Consensus 79 ~----eeL~~aI~~aL 90 (534)
. ++..++++.+.
T Consensus 182 ~~~~~~d~~~~~~~l~ 197 (212)
T 2v82_A 182 AGQSVERTAQQAAAFV 197 (212)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 2 45655555543
No 165
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=69.37 E-value=9.5 Score=37.11 Aligned_cols=78 Identities=6% Similarity=0.055 Sum_probs=50.8
Q ss_pred cCHHHHHHHHHhc--CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 4 TRPVEALATVRIQ--RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 4 ss~~EALe~L~~~--~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.++++++++.- ...++|=+.+ ...++.+.++++++..++ .+|-....-+.+.+..++++||+..+. |-...+
T Consensus 43 ~~~~~a~~~a~al~~gGi~~iEvt~--~t~~a~e~I~~l~~~~~~-~~iGaGTVlt~~~a~~Ai~AGA~fIvs-P~~~~~ 118 (232)
T 4e38_A 43 DNAEDIIPLGKVLAENGLPAAEITF--RSDAAVEAIRLLRQAQPE-MLIGAGTILNGEQALAAKEAGATFVVS-PGFNPN 118 (232)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEET--TSTTHHHHHHHHHHHCTT-CEEEEECCCSHHHHHHHHHHTCSEEEC-SSCCHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCCCHHHHHHHHHHhCCC-CEEeECCcCCHHHHHHHHHcCCCEEEe-CCCCHH
Confidence 3455555544331 4466555544 455789999999998876 445445556788899999999986655 544444
Q ss_pred HHHH
Q 043479 82 LKNV 85 (534)
Q Consensus 82 L~~a 85 (534)
+.++
T Consensus 119 vi~~ 122 (232)
T 4e38_A 119 TVRA 122 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 166
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=69.14 E-value=17 Score=36.17 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=46.5
Q ss_pred HHHHHHHHhhCCC-CcEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCChHHHHHHHHHHHHH
Q 043479 34 IELQKEINEEFTH-LPVMVMSSDDRESVIMKALASGVAFYIL-----KPLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 34 leLL~~Lr~~~p~-ipVIVLSs~~d~~~~~~AL~aGA~dyL~-----KP~s~eeL~~aI~~aL~~ 92 (534)
.++++.+++..++ +|||+=..-.+++.+..++++||++.++ |--++..+.+++..++..
T Consensus 165 ~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~a 229 (268)
T 2htm_A 165 RALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEA 229 (268)
T ss_dssp HHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHH
Confidence 5678888885677 9999988888999999999999999874 545566777776665543
No 167
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=68.87 E-value=9.6 Score=40.93 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 8 EALATVRIQRDIDLVVTDLHMPEMN-GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 8 EALe~L~~~~~pDLVLLDi~mPdmd-GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+.++.+.+ ..+|+|.+|...+... -+++++++++.+|++||++ ....+.+.+..+.++||+.+..
T Consensus 234 ~~a~~l~~-aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 234 ERVKALVE-AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHH-TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHh-ccCceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 33333433 4699999998877543 4578999999988888877 3344667788899999999885
No 168
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=68.46 E-value=9.2 Score=35.36 Aligned_cols=84 Identities=7% Similarity=0.002 Sum_probs=52.4
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCC----CCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe-----C
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMP----EMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL-----K 75 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mP----dmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~-----K 75 (534)
+..+.++.+.+ ...|.|.++.... ....++.++++++..+++||++-.+- ..+.+.+++++||+.++. +
T Consensus 115 t~~~~~~~~~~-~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~ 192 (211)
T 3f4w_A 115 DLPARVRLLEE-AGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITH 192 (211)
T ss_dssp SHHHHHHHHHH-HTCCEEEEECCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHT
T ss_pred CHHHHHHHHHH-cCCCEEEEcCCCcccccCCCCHHHHHHHHHHcCCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcC
Confidence 34344444443 3578877763211 11357888999887767888776555 477788899999999864 4
Q ss_pred CCChHHHHHHHHHHH
Q 043479 76 PLNPDDLKNVWQYAM 90 (534)
Q Consensus 76 P~s~eeL~~aI~~aL 90 (534)
.-++.+..+.++..+
T Consensus 193 ~~d~~~~~~~l~~~~ 207 (211)
T 3f4w_A 193 AADPAGEARKISQVL 207 (211)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 445554444444433
No 169
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=67.81 E-value=5.4 Score=36.99 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=53.3
Q ss_pred cCHHHHHHHHHhc-CCceEEEEeCCCCC--CCHHHHHHHHHhhCCCCcEEE--EecCCCHHHHHHHHHcCCcEEEeCCCC
Q 043479 4 TRPVEALATVRIQ-RDIDLVVTDLHMPE--MNGIELQKEINEEFTHLPVMV--MSSDDRESVIMKALASGVAFYILKPLN 78 (534)
Q Consensus 4 ss~~EALe~L~~~-~~pDLVLLDi~mPd--mdGleLL~~Lr~~~p~ipVIV--LSs~~d~~~~~~AL~aGA~dyL~KP~s 78 (534)
.+.+++++.++.. ..+|+|-+- +|- ..|+++++.+|+..+++||.+ +........+..+.++||+.++.-...
T Consensus 10 ~~~~~~~~~~~~~~~~~diie~G--~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~ 87 (211)
T 3f4w_A 10 LTLPEAMVFMDKVVDDVDIIEVG--TPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVT 87 (211)
T ss_dssp CCHHHHHHHHHHHGGGCSEEEEC--HHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS
T ss_pred CCHHHHHHHHHHhhcCccEEEeC--cHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCC
Confidence 4677788777652 245654333 242 457899999998877788753 233333334888999999999885544
Q ss_pred h-HHHHHHHHHH
Q 043479 79 P-DDLKNVWQYA 89 (534)
Q Consensus 79 ~-eeL~~aI~~a 89 (534)
. +.+...++.+
T Consensus 88 ~~~~~~~~~~~~ 99 (211)
T 3f4w_A 88 DVLTIQSCIRAA 99 (211)
T ss_dssp CHHHHHHHHHHH
T ss_pred ChhHHHHHHHHH
Confidence 3 4445555444
No 170
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=67.69 E-value=4.4 Score=27.78 Aligned_cols=34 Identities=9% Similarity=-0.113 Sum_probs=24.8
Q ss_pred HHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 043479 174 QAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYR 211 (534)
Q Consensus 174 eaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyR 211 (534)
.++..+. +....++|++.|+ +++.+|..++.+|+
T Consensus 13 ~i~~~~~-~g~s~~~IA~~lg---is~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 13 QLDVMKL-LNVSLHEMSRKIS---RSRHCIRVYLKDPV 46 (51)
T ss_dssp HHHHHHH-TTCCHHHHHHHHT---CCHHHHHHHHHCST
T ss_pred HHHHHHH-cCCCHHHHHHHHC---cCHHHHHHHHhhHH
Confidence 4444443 3445899999999 89999988887664
No 171
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=67.29 E-value=14 Score=39.58 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPEM-NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPdm-dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.++.+.+ ..+|+|.+|...+.. .-.++++++++..|++||++- ...+.+.+..+.++||+.+..
T Consensus 231 ~~~a~~l~~-aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 231 GERVAALVA-AGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp HHHHHHHHH-TTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHhh-cccceEEecccCCcchhHHHHHHHHHHHCCCceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 344444444 469999999877653 345789999998888888763 344667788999999999886
No 172
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=67.10 E-value=15 Score=37.90 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPEM-NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPdm-dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.++.+.+ ..+|+|.+|...... .-++.++++++..|+++||+-+ ..+.+.+.++.++||+.+..
T Consensus 110 ~~~~~~lie-aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~-v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALVE-AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGN-VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHHH-TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh-CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeee-eCCHHHHHHHHHcCCCEEEE
Confidence 445555555 579999998653322 3456788888888888877532 34567788899999999887
No 173
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=67.03 E-value=41 Score=31.76 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=47.5
Q ss_pred CHHHHHHHHHhcCCceE-EEEeCCCCC-CC--HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 5 RPVEALATVRIQRDIDL-VVTDLHMPE-MN--GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 5 s~~EALe~L~~~~~pDL-VLLDi~mPd-md--GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+..|.++.+.+ ..++. ++.++.-.+ .. .+++++++++.. ++|||+..+-.+.+.+.++++.||++++.
T Consensus 152 ~~~e~~~~~~~-~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~v 223 (253)
T 1thf_D 152 LLRDWVVEVEK-RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALA 223 (253)
T ss_dssp EHHHHHHHHHH-TTCSEEEEEETTTTTSCSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHH-CCCCEEEEEeccCCCCCCCCCHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCChHHHH
Confidence 34555555555 45674 445554222 12 378899998754 69999988888888888999999999865
No 174
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=66.91 E-value=9.3 Score=36.95 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=49.6
Q ss_pred HHHHHhcCCceEEEEeCCCCC--CC--------------------HHHHHHHHHhhCCCCcEEEEecCCCHH---HHHHH
Q 043479 10 LATVRIQRDIDLVVTDLHMPE--MN--------------------GIELQKEINEEFTHLPVMVMSSDDRES---VIMKA 64 (534)
Q Consensus 10 Le~L~~~~~pDLVLLDi~mPd--md--------------------GleLL~~Lr~~~p~ipVIVLSs~~d~~---~~~~A 64 (534)
++.+.+ ...|+|-+++-..+ +| ++++++++++. .++||++++-. +.. .+..+
T Consensus 38 ~~~l~~-~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~-~~~Pv~~m~~~-~~~~~~~~~~a 114 (262)
T 1rd5_A 38 LRLLDG-CGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPE-LSCPVVLLSYY-KPIMFRSLAKM 114 (262)
T ss_dssp HHHHHH-TTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGG-CSSCEEEECCS-HHHHSCCTHHH
T ss_pred HHHHHH-cCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCEEEEecC-cHHHHHHHHHH
Confidence 334444 56899999874432 33 45677788776 56899887522 221 13348
Q ss_pred HHcCCcEEEeCCCChHHHHHHHHHH
Q 043479 65 LASGVAFYILKPLNPDDLKNVWQYA 89 (534)
Q Consensus 65 L~aGA~dyL~KP~s~eeL~~aI~~a 89 (534)
.++||++++.-....+++.+.+..+
T Consensus 115 ~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 115 KEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp HHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred HHcCCCEEEEcCCChhhHHHHHHHH
Confidence 8999999998777666666555544
No 175
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=66.84 E-value=15 Score=37.97 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 8 EALATVRIQRDIDLVVTDLHMPEMN-GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 8 EALe~L~~~~~pDLVLLDi~mPdmd-GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+.++.+.+ ..+|+|.+|....... -++.+++|++..+.+|||+= ...+.+.+..+.++||+.+.+
T Consensus 103 e~~~~a~~-aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G-~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 103 QRAEALRD-AGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAG-NVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHH-TTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHH-cCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEc-CcCCHHHHHHHHHcCCCEEEE
Confidence 44555554 5699999997654322 35788899988777888762 224567788899999999886
No 176
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=65.93 E-value=35 Score=33.76 Aligned_cols=83 Identities=8% Similarity=0.023 Sum_probs=54.5
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCC----CCH-HHHHHHHHhhC--CCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPE----MNG-IELQKEINEEF--THLPVMVMSSDDRESVIMKALASGVAFYILKPL 77 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPd----mdG-leLL~~Lr~~~--p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~ 77 (534)
..++.++.+++ ..+|+|.+-..+.. +.. -++++.|++.. ++++|++=-...+.+ .+.+.|++.|..--.
T Consensus 168 p~e~iv~aa~e-~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~ 243 (262)
T 1xrs_B 168 ANEDFIKKAVE-LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGR 243 (262)
T ss_dssp CHHHHHHHHHH-TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTC
T ss_pred CHHHHHHHHHH-cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCch
Confidence 56778888887 78999999988764 222 23566666644 236655444433333 366789999887767
Q ss_pred ChHHHHHHHHHHHH
Q 043479 78 NPDDLKNVWQYAMT 91 (534)
Q Consensus 78 s~eeL~~aI~~aL~ 91 (534)
...++...|...+.
T Consensus 244 ~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 244 FADDVATFAVKTLN 257 (262)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766665543
No 177
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=63.78 E-value=15 Score=36.98 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=48.3
Q ss_pred eEEEE-eCCCCCCCH-HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHH
Q 043479 20 DLVVT-DLHMPEMNG-IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYA 89 (534)
Q Consensus 20 DLVLL-Di~mPdmdG-leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~a 89 (534)
|.|++ |-|+--..+ -+.++++++..|..+|.|-. ++.+.+.+++++|++......+++++++++++.+
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv--~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEV--TNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHHCTTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEe--CCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 45555 433332222 35777888777888877744 3557788999999999999999999999888765
No 178
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=62.95 E-value=13 Score=35.52 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=53.8
Q ss_pred CHHHHHHHHHhcCCceEEEEeCC---C-CC-CCHHHHHHHHHhhCCCCcEE--EEecCCCHHHHHHHHHcCCcEEEeCCC
Q 043479 5 RPVEALATVRIQRDIDLVVTDLH---M-PE-MNGIELQKEINEEFTHLPVM--VMSSDDRESVIMKALASGVAFYILKPL 77 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~---m-Pd-mdGleLL~~Lr~~~p~ipVI--VLSs~~d~~~~~~AL~aGA~dyL~KP~ 77 (534)
+..+.++.+.+ ...|++=+|+. . |. ..|.++++.||+.. +.|+. +++.. ...++..+.++||+++..-..
T Consensus 18 ~l~~~i~~~~~-~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~-~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDE-AGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT-KKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHH-TTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC-CSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHH-cCCCEEEEEEEecCCCcchhhhHHHHHHHHhhc-CCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcc
Confidence 45566777765 45677666652 1 22 34679999999865 35555 66643 344678899999999977655
Q ss_pred --ChHHHHHHHHHHH
Q 043479 78 --NPDDLKNVWQYAM 90 (534)
Q Consensus 78 --s~eeL~~aI~~aL 90 (534)
..+++.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~i~ 109 (230)
T 1tqj_A 95 HNASPHLHRTLCQIR 109 (230)
T ss_dssp TTTCTTHHHHHHHHH
T ss_pred cccchhHHHHHHHHH
Confidence 4456666666654
No 179
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=62.70 E-value=2.9 Score=37.37 Aligned_cols=47 Identities=11% Similarity=0.009 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q 043479 168 LHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRV 217 (534)
Q Consensus 168 Lh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~ 217 (534)
|+++..+++...-.+....++|++.|+ ++..+|++|+.+-|..|++.
T Consensus 136 L~~~~r~vl~l~~~~g~s~~eIA~~lg---is~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDLTHRELAAETG---LPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHSCCSSCCSTTTCC---CCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHHH
Confidence 677777777775344555788999998 89999999999999988765
No 180
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=62.19 E-value=22 Score=35.08 Aligned_cols=72 Identities=8% Similarity=0.011 Sum_probs=52.0
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCC--CCHHHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPE--MNGIELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPd--mdGleLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
.+.+.+|+...++. .+|+|-+.-.-.. .-+++.+++|.+..+ ++|||..++-.+.+.+.++.++|++++++=
T Consensus 168 ev~t~ee~~~A~~~--Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 168 EVHTEQEADRALKA--GAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp EESSHHHHHHHHHH--TCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred EcCCHHHHHHHHHC--CCCEEEECCCcccccccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 46678887666553 5888877532111 123567778877665 689999888888999999999999999863
No 181
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=62.12 E-value=45 Score=33.44 Aligned_cols=88 Identities=17% Similarity=0.113 Sum_probs=58.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCC---------------------------C--------CCHHHHHHHHHhhCCC
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMP---------------------------E--------MNGIELQKEINEEFTH 46 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mP---------------------------d--------mdGleLL~~Lr~~~p~ 46 (534)
.+.+.+|+++.+.. .+|+|.+...-. + ...+++++++++..+
T Consensus 131 ~v~~~~Ea~~a~~~--Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~- 207 (297)
T 4adt_A 131 GCTNLGEALRRISE--GASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKR- 207 (297)
T ss_dssp EESSHHHHHHHHHH--TCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHTS-
T ss_pred EeCCHHHHHHHHhC--CCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhcC-
Confidence 36788898888865 478888874311 0 123577788877644
Q ss_pred CcEEE--EecCCCHHHHHHHHHcCCcEEEe-----CCCChHHHHHHHHHHHHH
Q 043479 47 LPVMV--MSSDDRESVIMKALASGVAFYIL-----KPLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 47 ipVIV--LSs~~d~~~~~~AL~aGA~dyL~-----KP~s~eeL~~aI~~aL~~ 92 (534)
+|||+ ..+-.+.+.+.+++++||++++. |.-++.+..+.+..++..
T Consensus 208 iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~ 260 (297)
T 4adt_A 208 LPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSN 260 (297)
T ss_dssp CSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred CCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHh
Confidence 77763 44555888899999999999975 444666555555555543
No 182
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=62.09 E-value=32 Score=35.09 Aligned_cols=80 Identities=18% Similarity=0.190 Sum_probs=54.9
Q ss_pred HHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhC--C--CCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 9 ALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEF--T--HLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 9 ALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~--p--~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
.++.+.. ..+|.|++|+.-...+--++.+.|+... . ..+++|=+...+...+..+++.|+++++ +|=-+.+++.
T Consensus 55 ~~e~a~~-~GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~saee~~ 133 (339)
T 1izc_A 55 VTKVLAA-TKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVR 133 (339)
T ss_dssp HHHHHHH-TCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHHHHH
T ss_pred HHHHHHh-CCCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCHHHHH
Confidence 3444444 5799999999766555545555554321 1 2677887877788889999999999865 5556788888
Q ss_pred HHHHHH
Q 043479 84 NVWQYA 89 (534)
Q Consensus 84 ~aI~~a 89 (534)
.+++.+
T Consensus 134 ~~~~~~ 139 (339)
T 1izc_A 134 EFVKEM 139 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776554
No 183
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=61.65 E-value=21 Score=26.95 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=37.3
Q ss_pred CccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043479 161 KVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKY 210 (534)
Q Consensus 161 rv~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKy 210 (534)
+-.|+.+=..++++++..+|..+ =++|++.|. +-|...++.|..+|
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~~--~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGN--WQDVANQMC--TKTKEECEKHYMKY 53 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTC--HHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCc--HHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34699999999999999998543 378999884 78899998886654
No 184
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=61.38 E-value=21 Score=36.10 Aligned_cols=54 Identities=9% Similarity=0.184 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHH
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYA 89 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~a 89 (534)
-+.++++|+..|..+|.|-.. +.+.+.+|+++||+-.++..+++++++++++.+
T Consensus 195 ~~Av~~ar~~~p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 195 TLAIQRLRKNLKNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHHHSSSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 356778888888888877554 457888999999999999999999999999765
No 185
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=61.33 E-value=31 Score=38.92 Aligned_cols=85 Identities=11% Similarity=-0.031 Sum_probs=56.5
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCC-C-CHHHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPE-M-NGIELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPd-m-dGleLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
++++.++.+.+ ..+|+|.+-..+.. + ..-++++.|++... +++| ++-+..-......+.+.|+++|+..-.+..+
T Consensus 635 ~~eeiv~aA~e-~~adiVglSsl~~~~~~~~~~vi~~L~~~G~~~i~V-ivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e 712 (727)
T 1req_A 635 TPEETARQAVE-ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILI-TVGGVIPEQDFDELRKDGAVEIYTPGTVIPE 712 (727)
T ss_dssp CHHHHHHHHHH-TTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEE-EEEESCCGGGHHHHHHTTEEEEECTTCCHHH
T ss_pred CHHHHHHHHHH-cCCCEEEEeeecHhHHHHHHHHHHHHHhcCCCCCEE-EEcCCCccccHHHHHhCCCCEEEcCCccHHH
Confidence 57888888887 78999988776653 2 23457777777654 4443 4443222233345678999999986667777
Q ss_pred HHHHHHHHHH
Q 043479 82 LKNVWQYAMT 91 (534)
Q Consensus 82 L~~aI~~aL~ 91 (534)
+...|...+.
T Consensus 713 ~a~~l~~~l~ 722 (727)
T 1req_A 713 SAISLVKKLR 722 (727)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 186
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=61.31 E-value=24 Score=38.00 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCCCCH-HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPEMNG-IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPdmdG-leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.++.+.+ ..+|+|.+|...+...+ +++++++++.++++|||+-. ..+.+.+..+.++||+.++.
T Consensus 258 ~era~aLve-aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~-v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 258 MTRIDALVK-ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGN-VATAEATKALIEAGANVVKV 324 (511)
T ss_dssp HHHHHHHHH-TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh-hccceEEecccccchhhhhhHHHHHHHhCCCceEEeee-eccHHHHHHHHHhCCCEEEE
Confidence 344444554 57999999988765443 46899999998888877533 44677888999999998875
No 187
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=61.19 E-value=36 Score=38.61 Aligned_cols=89 Identities=13% Similarity=-0.093 Sum_probs=59.0
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCCCC-C-CHHHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChH
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHMPE-M-NGIELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~mPd-m-dGleLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~e 80 (534)
.++++.++.+.+ ..+|+|.+-..+.. + ..-++++.|++... +++| ++-+..-......+.+.|+++|+..-.+..
T Consensus 642 v~~eeiv~aA~e-~~adiVglSsl~~~~~~~~~~vi~~Lr~~G~~dv~V-ivGG~~P~~d~~~l~~~GaD~~f~pgtd~~ 719 (762)
T 2xij_A 642 QTPREVAQQAVD-ADVHAVGVSTLAAGHKTLVPELIKELNSLGRPDILV-MCGGVIPPQDYEFLFEVGVSNVFGPGTRIP 719 (762)
T ss_dssp CCHHHHHHHHHH-TTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEE-EEEESCCGGGHHHHHHHTCCEEECTTCCHH
T ss_pred CCHHHHHHHHHH-cCCCEEEEeeecHHHHHHHHHHHHHHHhcCCCCCEE-EEeCCCCcccHHHHHhCCCCEEeCCCCCHH
Confidence 357888888877 78999988766543 2 23457777777655 4443 344322222334567899999998666888
Q ss_pred HHHHHHHHHHHHhh
Q 043479 81 DLKNVWQYAMTYKK 94 (534)
Q Consensus 81 eL~~aI~~aL~~k~ 94 (534)
++...+...+..+.
T Consensus 720 e~~~~i~~~l~~~~ 733 (762)
T 2xij_A 720 KAAVQVLDDIEKCL 733 (762)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888877775543
No 188
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=60.76 E-value=59 Score=30.59 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCce-EEEEeCCCCC-CC--HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe------C
Q 043479 6 PVEALATVRIQRDID-LVVTDLHMPE-MN--GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL------K 75 (534)
Q Consensus 6 ~~EALe~L~~~~~pD-LVLLDi~mPd-md--GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~------K 75 (534)
..|.++.+.+ ..++ +++.+..-.+ .. .+++++++++.. .+|||...+-.+.+.+.++++.||++++. .
T Consensus 154 ~~e~~~~~~~-~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~ 231 (252)
T 1ka9_F 154 AVEWAVKGVE-LGAGEILLTSMDRDGTKEGYDLRLTRMVAEAV-GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFG 231 (252)
T ss_dssp HHHHHHHHHH-HTCCEEEEEETTTTTTCSCCCHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHH-cCCCEEEEecccCCCCcCCCCHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 3444455544 3466 5555553221 12 388999998765 59999988888888888899999999875 3
Q ss_pred CCChHHHHHH
Q 043479 76 PLNPDDLKNV 85 (534)
Q Consensus 76 P~s~eeL~~a 85 (534)
|+++.++++.
T Consensus 232 ~~~~~~~~~~ 241 (252)
T 1ka9_F 232 EIPIPKLKRY 241 (252)
T ss_dssp SSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4566665544
No 189
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=60.59 E-value=7.6 Score=36.63 Aligned_cols=85 Identities=11% Similarity=0.068 Sum_probs=54.1
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCCCC--CCHHHHHHHHHhhCCCCcEEEEec-CCC-HHHHHHHHHcCCcEEEeCCCCh
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHMPE--MNGIELQKEINEEFTHLPVMVMSS-DDR-ESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~mPd--mdGleLL~~Lr~~~p~ipVIVLSs-~~d-~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.+++++.++. ....+-++++.++- ..|.++++.||+.+++.||++-.- .+. ...+..+.++||+.+..-....
T Consensus 16 ~~~~~~~~~~~~-~~~~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~ 94 (218)
T 3jr2_A 16 TNLTDAVAVASN-VASYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAH 94 (218)
T ss_dssp SSHHHHHHHHHH-HGGGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSC
T ss_pred CCHHHHHHHHHH-hcCCceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCC
Confidence 467888888875 22234456666542 357899999999877777764221 122 3356778899999888766654
Q ss_pred HH-HHHHHHHH
Q 043479 80 DD-LKNVWQYA 89 (534)
Q Consensus 80 ee-L~~aI~~a 89 (534)
++ +.++++.+
T Consensus 95 ~~~~~~~~~~~ 105 (218)
T 3jr2_A 95 IATIAACKKVA 105 (218)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 43 45555444
No 190
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=60.31 E-value=51 Score=30.11 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=50.3
Q ss_pred cCHHHHHHHHHhc--CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHH
Q 043479 4 TRPVEALATVRIQ--RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDD 81 (534)
Q Consensus 4 ss~~EALe~L~~~--~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ee 81 (534)
.+.+++.+.++.. ..+|+|-+.+..+ .+.+.++.+|+..+.-.+|-+....+.+....+.+.||+.+ .-|....+
T Consensus 19 ~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~~ 95 (205)
T 1wa3_A 19 NSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VSPHLDEE 95 (205)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSSCCHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-EcCCCCHH
Confidence 3455555544321 4688887766654 56778888888754222344434456777888999999877 55655555
Q ss_pred HHHHH
Q 043479 82 LKNVW 86 (534)
Q Consensus 82 L~~aI 86 (534)
+.+..
T Consensus 96 ~~~~~ 100 (205)
T 1wa3_A 96 ISQFC 100 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 191
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=60.16 E-value=52 Score=30.47 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhcCCce-EEEEeCCCCCC---CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 5 RPVEALATVRIQRDID-LVVTDLHMPEM---NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 5 s~~EALe~L~~~~~pD-LVLLDi~mPdm---dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+..+.++.+.+ ...| |.+.|...... ..+++++++++.. ++||++.....+.+.+.+++++||+.+..
T Consensus 34 ~~~~~a~~~~~-~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 34 DPVEMAVRYEE-EGADEIAILDITAAPEGRATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp CHHHHHHHHHH-TTCSCEEEEECCCCTTTHHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHH-cCCCEEEEEeCCccccCCcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 45566666665 5677 55556543221 2467788887765 58999888778888888999999998874
No 192
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=60.07 E-value=26 Score=32.91 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=58.7
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCCC-CC-HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-----eC
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMPE-MN-GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-----LK 75 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mPd-md-GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-----~K 75 (534)
+.+..|+.+..+. ..|.|-+ .|. .- |.+.++.++...+++|++.+-+- +.+.+.+.+++|++.+. .+
T Consensus 111 ~~t~~e~~~A~~~--Gad~v~~---fpa~~~gG~~~lk~l~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 111 VLTPTEVERALAL--GLSALKF---FPAEPFQGVRVLRAYAEVFPEVRFLPTGGI-KEEHLPHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp ECSHHHHHHHHHT--TCCEEEE---TTTTTTTHHHHHHHHHHHCTTCEEEEBSSC-CGGGHHHHHTCSSBSCEEESGGGS
T ss_pred CCCHHHHHHHHHC--CCCEEEE---ecCccccCHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHhCCCcEEEEehhhhC
Confidence 4578888877764 5788877 453 33 88999999998888998866555 46778889999987754 33
Q ss_pred CCChHHHHHHHHHHHH
Q 043479 76 PLNPDDLKNVWQYAMT 91 (534)
Q Consensus 76 P~s~eeL~~aI~~aL~ 91 (534)
-+++++.+..++++.
T Consensus 185 -~d~~~i~~~a~~~~~ 199 (207)
T 2yw3_A 185 -GNLEAVRAKVRAAKA 199 (207)
T ss_dssp -SCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHH
Confidence 455667766666653
No 193
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=59.65 E-value=39 Score=33.91 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=50.1
Q ss_pred CeecCHHHHHHHHHhcCCceEEEEeCCCC--CCCH----------HHHHH----HHHhhCCCCcEEEEe-cCCCHHHHHH
Q 043479 1 VTVTRPVEALATVRIQRDIDLVVTDLHMP--EMNG----------IELQK----EINEEFTHLPVMVMS-SDDRESVIMK 63 (534)
Q Consensus 1 vtass~~EALe~L~~~~~pDLVLLDi~mP--dmdG----------leLL~----~Lr~~~p~ipVIVLS-s~~d~~~~~~ 63 (534)
+++.+.++|.++.+. .||+|++..-+- +.-| .+.++ .+++..|++.|+.-. +-.+.+.+..
T Consensus 168 ~~v~~~eeA~amA~a--gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~ 245 (286)
T 2p10_A 168 PYVFSPEDAVAMAKA--GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARF 245 (286)
T ss_dssp CEECSHHHHHHHHHH--TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHH
T ss_pred EecCCHHHHHHHHHc--CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHH
Confidence 357789999988765 699999986532 2111 23333 334567877555555 4467888999
Q ss_pred HHHc--CCcEEEeCC
Q 043479 64 ALAS--GVAFYILKP 76 (534)
Q Consensus 64 AL~a--GA~dyL~KP 76 (534)
+++. |+++|+.-.
T Consensus 246 ~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 246 ILDSCQGCHGFYGAS 260 (286)
T ss_dssp HHHHCTTCCEEEESH
T ss_pred HHhcCCCccEEEeeh
Confidence 9999 999999853
No 194
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=59.37 E-value=22 Score=33.59 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=45.2
Q ss_pred HHHHHHHHhcC--CceEEEEeCCCCCC-------CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQR--DIDLVVTDLHMPEM-------NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~--~pDLVLLDi~mPdm-------dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.++.+.. . ..|.|+++...|+. .+++.++++++..+++||++.-+-. .+.+.++.++||+.++.
T Consensus 126 ~e~~~~~~~-~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~-~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 126 VEEVFPLVE-AENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLG-PSTIDVAASAGANCIVA 200 (228)
T ss_dssp GGGGHHHHH-SSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCS-TTTHHHHHHHTCCEEEE
T ss_pred HHHHHHHHh-cCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 344554443 2 58999998877652 3467778888776668876655544 46677888889999865
No 195
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=58.53 E-value=21 Score=36.43 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=43.7
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHH
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYA 89 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~a 89 (534)
.+.++.+++..|..+|++.... .+.+.+++++|++.+.+..+++++|+++++.+
T Consensus 219 ~~Av~~ar~~~p~~kIeVEVdt--ldea~eAl~aGaD~I~LDn~~~~~l~~av~~l 272 (320)
T 3paj_A 219 RQAISTAKQLNPGKPVEVETET--LAELEEAISAGADIIMLDNFSLEMMREAVKIN 272 (320)
T ss_dssp HHHHHHHHHHSTTSCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4577788888888888776553 46778899999999999999999999888663
No 196
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=58.35 E-value=32 Score=36.68 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPEMN-GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPdmd-GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.++.+.+ ..+|+|.+|....... .+++++++++..+++||++-.. .+.+.+..+.++||+.+..
T Consensus 257 ~~~a~~~~~-aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 257 KYRLDLLTQ-AGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHH-TTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHH-cCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 444445554 5799999988765433 3588999999887888876333 4567788899999998866
No 197
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=58.11 E-value=30 Score=33.77 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 33 GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 33 GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+.++++++++. .++|||+..+-.+.+.+.+++++||+++++=
T Consensus 166 ~~~~l~~i~~~-~~iPviv~gGI~t~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 166 NPLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLLN 207 (264)
T ss_dssp CHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHhc-CCCCEEEEeCCCCHHHHHHHHHcCCCEEEEc
Confidence 47888999874 4799999988888999999999999998753
No 198
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=57.91 E-value=38 Score=32.32 Aligned_cols=69 Identities=10% Similarity=0.122 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhcCCceEEEE-eCCCCC---CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 5 RPVEALATVRIQRDIDLVVT-DLHMPE---MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLL-Di~mPd---mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+..|..+.+.. ..++.|++ ++.-.+ .-.+++++++++.. ++|||...+-.+.+.+.++++.||++++.=
T Consensus 157 ~~~e~~~~~~~-~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~-~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 157 LLRDWVVEVEK-RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp EHHHHHHHHHH-TTCSEEEEEETTTTTTCSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred hHHHHHHHHHH-cCCCEEEEEeecCCCCcCCCCHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 34555555555 45666554 443211 12378899988764 699999998888888889999999998754
No 199
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=56.87 E-value=15 Score=34.38 Aligned_cols=68 Identities=13% Similarity=0.023 Sum_probs=47.7
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCC--------CCHHHHHHHHHhhC-CCCcEEEEecCCCHHHHHHHHHcCCcEE
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPE--------MNGIELQKEINEEF-THLPVMVMSSDDRESVIMKALASGVAFY 72 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPd--------mdGleLL~~Lr~~~-p~ipVIVLSs~~d~~~~~~AL~aGA~dy 72 (534)
.+.+.+|+.+.. . ..|.|+++...|. .-|++.++.+++.. ..+|||.+-+-. .+.+.++++.|++++
T Consensus 94 s~~t~~e~~~A~-~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gV 169 (210)
T 3ceu_A 94 SCHSVEEVKNRK-H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGA 169 (210)
T ss_dssp EECSHHHHHTTG-G--GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEE
T ss_pred ecCCHHHHHHHh-h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEE
Confidence 356777776553 3 4799988765442 23678888887653 569998876655 667788899999988
Q ss_pred E
Q 043479 73 I 73 (534)
Q Consensus 73 L 73 (534)
-
T Consensus 170 a 170 (210)
T 3ceu_A 170 V 170 (210)
T ss_dssp E
T ss_pred E
Confidence 4
No 200
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=56.78 E-value=21 Score=35.84 Aligned_cols=74 Identities=9% Similarity=0.053 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCC--CCCC---HHHHHHHHHhhCCCCcEEEEecCC------------C-----HHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHM--PEMN---GIELQKEINEEFTHLPVMVMSSDD------------R-----ESVIM 62 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~m--Pdmd---GleLL~~Lr~~~p~ipVIVLSs~~------------d-----~~~~~ 62 (534)
+...|++.+......+|+||.... +-.+ -+..+..+++.++.+||++-+++. . .....
T Consensus 149 ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~ 228 (285)
T 3sz8_A 149 QLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLAR 228 (285)
T ss_dssp GTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHH
Confidence 345677877664567899998643 1111 233445566666668998866665 2 34567
Q ss_pred HHHHcCCcE-EEeCCCC
Q 043479 63 KALASGVAF-YILKPLN 78 (534)
Q Consensus 63 ~AL~aGA~d-yL~KP~s 78 (534)
.|+.+||++ +|.|-++
T Consensus 229 AAvA~GA~gl~IE~H~~ 245 (285)
T 3sz8_A 229 AGIAVGIAGLFLEAHPD 245 (285)
T ss_dssp HHHHHCCSEEEEEEESC
T ss_pred HHHHhCCCEEEEEeccC
Confidence 788999997 4555333
No 201
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=56.36 E-value=49 Score=37.08 Aligned_cols=85 Identities=6% Similarity=-0.050 Sum_probs=57.6
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCC----CCHH-HHHHHHHhhCCC--CcEEEEecCCCHHHHHHHHHcCCcEEEeCCC
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPE----MNGI-ELQKEINEEFTH--LPVMVMSSDDRESVIMKALASGVAFYILKPL 77 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPd----mdGl-eLL~~Lr~~~p~--ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~ 77 (534)
+.++.++.+.+ ..+|+|.+...|.. +..+ ++++.|++.... ++|++=-...+.+ .+.+.||+.|.....
T Consensus 645 PpEeIVeAA~E-edADVVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~tqd---~AkeIGADa~f~DAT 720 (763)
T 3kp1_A 645 PVEKLVDAAIE-LKADAILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTPE---VAVKQGVDAGFGRGS 720 (763)
T ss_dssp CHHHHHHHHHH-TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCCHH---HHHTTTCSEEECTTC
T ss_pred CHHHHHHHHHH-cCCCEEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHH---HHHHcCCcEEECCcc
Confidence 67888888887 78999999988775 2333 466677765542 5555433334433 345899999988777
Q ss_pred ChHHHHHHHHHHHHHh
Q 043479 78 NPDDLKNVWQYAMTYK 93 (534)
Q Consensus 78 s~eeL~~aI~~aL~~k 93 (534)
...++...|...+..+
T Consensus 721 eAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 721 KGIHVATFLVKKRREM 736 (763)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 7777777766665443
No 202
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=55.88 E-value=69 Score=30.10 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=54.4
Q ss_pred CHHHHHHHHHhcCCce-EEEEeCC----CCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHc-----C-CcEEE
Q 043479 5 RPVEALATVRIQRDID-LVVTDLH----MPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS-----G-VAFYI 73 (534)
Q Consensus 5 s~~EALe~L~~~~~pD-LVLLDi~----mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~a-----G-A~dyL 73 (534)
+..|..+.+.+ ..++ +++.++. +.+. .+++++++++.. ++|||...+-.+.+.+.++++. | |++++
T Consensus 145 ~~~e~~~~~~~-~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~-~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKE-YGLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEA-EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHT-TTCCEEEEEETTHHHHTCCC-CHHHHHHHHHHH-TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHh-CCCCEEEEEeecccccCCcC-CHHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 55665555655 5577 5555643 1222 488999998765 5899998888888999999988 9 99886
Q ss_pred e------CCCChHHHHHH
Q 043479 74 L------KPLNPDDLKNV 85 (534)
Q Consensus 74 ~------KP~s~eeL~~a 85 (534)
. .+++.+++++.
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 4 46666666554
No 203
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=55.25 E-value=25 Score=34.15 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=52.0
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCC-CC-HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPE-MN-GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDL 82 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPd-md-GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL 82 (534)
..++.++.+++ ..||+|.+-..+.. +. --++++.|++..+.+||++--.....+. +-+.|++.|.. +..+.
T Consensus 162 p~e~l~~~~~~-~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~vGG~~~~~~~---~~~igad~~~~---da~~a 234 (258)
T 2i2x_B 162 PAEEVLAAVQK-EKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFACGGGAVNQDF---VSQFALGVYGE---EAADA 234 (258)
T ss_dssp CSHHHHHHHHH-HCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEEESTTCCHHH---HHTSTTEEECS---STTHH
T ss_pred CHHHHHHHHHH-cCCCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEEECccCCHHH---HHHcCCeEEEC---CHHHH
Confidence 45666777776 68999999887654 33 3457888888777788776655555443 33778877654 33555
Q ss_pred HHHHHHHH
Q 043479 83 KNVWQYAM 90 (534)
Q Consensus 83 ~~aI~~aL 90 (534)
...+.+++
T Consensus 235 v~~~~~l~ 242 (258)
T 2i2x_B 235 PKIADAII 242 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555555
No 204
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=55.17 E-value=36 Score=32.50 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhcCCce-EEEEeCCCCC---CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 5 RPVEALATVRIQRDID-LVVTDLHMPE---MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 5 s~~EALe~L~~~~~pD-LVLLDi~mPd---mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+..+..+.+.+ ...| |.+.|..... ..-+++++++++.. .+|||+.....+.+.+.++++.||+..+.=
T Consensus 31 ~~~~~a~~~~~-~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~-~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEK-RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHH-HTCSEEEEEETTTSSCSSCCCHHHHHHHGGGC-CSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHH-CCCCEEEEEecCcccCCCcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 45566666655 3455 5556765432 12278888888764 599999877777788889999999998764
No 205
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=55.00 E-value=23 Score=37.17 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPEMN-GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPdmd-GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.++.+.+ ..+|+|++|....... -.++++++++.. .+|||+- ...+.+.+..+.++||+.++.
T Consensus 146 ~e~~~~lve-aGvdvIvldta~G~~~~~~e~I~~ik~~~-~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVE-AGVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHH-HTCSEEEECCSCCSBHHHHHHHHHHHTTC-CCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH-cCCCEEEEeCCCCCcccHHHHHHHHHhcC-CCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 344555544 4699999997654322 267888888766 5777752 224577888899999999887
No 206
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=54.52 E-value=21 Score=36.03 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=42.4
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHH
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYA 89 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~a 89 (534)
-+.++.+++..|..+|.+-.. +.+.+.+++++|++...+..+++++|+++++.+
T Consensus 197 ~~Av~~~r~~~p~~~ieVEvd--tlde~~eAl~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 197 GEALDAAFALNAEVPVQIEVE--TLDQLRTALAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp HHHHHHHHHHC--CCCEEEES--SHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 356778888888888777644 446788899999999999999999999998876
No 207
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=54.15 E-value=29 Score=33.90 Aligned_cols=56 Identities=11% Similarity=0.274 Sum_probs=39.8
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe------CCCChHHHHHHHHHHH
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL------KPLNPDDLKNVWQYAM 90 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~------KP~s~eeL~~aI~~aL 90 (534)
+++++++++.. ++|||...+-.+.+.+.+++.+||+.+.. .|....++.+.+...+
T Consensus 230 ~~~i~~i~~~~-~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~ 291 (311)
T 1ep3_A 230 LKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELM 291 (311)
T ss_dssp HHHHHHHHTTC-SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHH
Confidence 47778887654 69999887877889999999999988743 3444455555554444
No 208
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=53.03 E-value=35 Score=31.61 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=48.1
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCC-----CC----CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHM-----PE----MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~m-----Pd----mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
+.+.+|+.+..+ ...|+|.+-..- .+ ...+++++++++.. ++|||+..+-.+.+.+.+++++||+.++
T Consensus 126 ~~t~~e~~~~~~--~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~-~ipvia~GGI~~~~~~~~~~~~Gad~v~ 202 (223)
T 1y0e_A 126 IATVEEAKNAAR--LGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSV 202 (223)
T ss_dssp CSSHHHHHHHHH--TTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred CCCHHHHHHHHH--cCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC-CCCEEEecCCCCHHHHHHHHHcCCCEEE
Confidence 345667666544 357877653210 11 12456788887765 5899988888789999999999999987
Q ss_pred eC
Q 043479 74 LK 75 (534)
Q Consensus 74 ~K 75 (534)
.=
T Consensus 203 vG 204 (223)
T 1y0e_A 203 VG 204 (223)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 209
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=53.00 E-value=19 Score=34.50 Aligned_cols=85 Identities=11% Similarity=0.067 Sum_probs=56.2
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCC----CC-CCHHHHHHHHHhhC-CCCcEEE--EecCCCHHHHHHHHHcCCcEEEeC
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHM----PE-MNGIELQKEINEEF-THLPVMV--MSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~m----Pd-mdGleLL~~Lr~~~-p~ipVIV--LSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
.+..++++.+.+ ...|.+-+|+.. |. .-|.++++.||+.. +++|+.+ +.... ..++..+.++||+.+..-
T Consensus 17 ~~l~~~i~~l~~-~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p-~~~i~~~~~aGad~itvH 94 (228)
T 3ovp_A 17 ANLGAECLRMLD-SGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKP-EQWVKPMAVAGANQYTFH 94 (228)
T ss_dssp GGHHHHHHHHHH-TTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCG-GGGHHHHHHHTCSEEEEE
T ss_pred hhHHHHHHHHHH-cCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCH-HHHHHHHHHcCCCEEEEc
Confidence 356778888876 556766666543 32 24889999999885 6677653 44333 345777889999988776
Q ss_pred CCChHHHHHHHHHHH
Q 043479 76 PLNPDDLKNVWQYAM 90 (534)
Q Consensus 76 P~s~eeL~~aI~~aL 90 (534)
....+++.+.++.+.
T Consensus 95 ~Ea~~~~~~~i~~i~ 109 (228)
T 3ovp_A 95 LEATENPGALIKDIR 109 (228)
T ss_dssp GGGCSCHHHHHHHHH
T ss_pred cCCchhHHHHHHHHH
Confidence 544445666666653
No 210
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=51.96 E-value=61 Score=33.84 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCceEEEEeCCC--CC---CCHHHHHHHHHhhCCCCcEEEEecCCC--HHHHHHHHHcCCcEEEeC---
Q 043479 6 PVEALATVRIQRDIDLVVTDLHM--PE---MNGIELQKEINEEFTHLPVMVMSSDDR--ESVIMKALASGVAFYILK--- 75 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~m--Pd---mdGleLL~~Lr~~~p~ipVIVLSs~~d--~~~~~~AL~aGA~dyL~K--- 75 (534)
..+|++++......+||||.+.- |. .--+..+..|++.++++|| .++++.. ......|+.+||+ +|.|
T Consensus 173 i~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpV-G~SdHt~G~~~~~~AAvAlGA~-iIEkHft 250 (385)
T 1vli_A 173 VHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVI-GFSDHSEHPTEAPCAAVRLGAK-LIEKHFT 250 (385)
T ss_dssp HHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEE-EEEECCSSSSHHHHHHHHTTCS-EEEEEBC
T ss_pred HHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCE-EeCCCCCCchHHHHHHHHcCCC-EEEeCCC
Confidence 45577777763446999986432 21 1134456777777767998 5677764 4567778999999 7766
Q ss_pred ------------CCChHHHHHHHHHHHHH
Q 043479 76 ------------PLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 76 ------------P~s~eeL~~aI~~aL~~ 92 (534)
.+++++|...++.+..-
T Consensus 251 ldra~~G~D~~~SL~P~ef~~lv~~ir~i 279 (385)
T 1vli_A 251 IDKNLPGADHSFALNPDELKEMVDGIRKT 279 (385)
T ss_dssp SCTTSSCSSCTTSBCHHHHHHHHHHHHHH
T ss_pred ccccCCCCchhhhCCHHHHHHHHHHHHHH
Confidence 24467888777766443
No 211
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=51.93 E-value=28 Score=33.95 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=45.4
Q ss_pred CCCccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHH--HHHHHhhh
Q 043479 159 KPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIF--LKRVAEQG 221 (534)
Q Consensus 159 Kprv~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~--lkr~a~~~ 221 (534)
+..-.||.+=+..|++++..+|-+ -..|++.+ ++-|...|++|..+||.. |....+..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~V--gTKT~~QcKnfY~~~kKRlnLD~ilke~ 190 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRD---FQAISDVI--GNKSVVQVKNFFVNYRRRFNIDEVLQEW 190 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHHH--SSCCHHHHHHHHHHTTTTTTHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHc--CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 445689999999999999999833 68888885 588999999999988764 44444443
No 212
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=51.83 E-value=65 Score=30.31 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhcCCce-EEEEeCCCCCCC---HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 5 RPVEALATVRIQRDID-LVVTDLHMPEMN---GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 5 s~~EALe~L~~~~~pD-LVLLDi~mPdmd---GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+..+..+.+.+ ...| |.+.|....... -+++++++++.. ++|||+.....+.+.+.++++.||+.++.=
T Consensus 32 d~~~~a~~~~~-~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~-~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDE-AGADELVFLDISATHEERAILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHH-HTCSCEEEEECCSSTTCHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHH-cCCCEEEEEcCCccccCccccHHHHHHHHHhC-CCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 45566666655 3455 556676543322 245567776653 699999988888999999999999998763
No 213
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=51.80 E-value=31 Score=34.74 Aligned_cols=88 Identities=19% Similarity=0.128 Sum_probs=63.3
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCC-------------------------C-C----------CCCHHHHHHHHHhhCCC
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLH-------------------------M-P----------EMNGIELQKEINEEFTH 46 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~-------------------------m-P----------dmdGleLL~~Lr~~~p~ 46 (534)
+.+..||++.+.+ ..|+|=+-.. + . ....++++++|++. +.
T Consensus 122 ~~~l~EAlrri~e--GA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~-~~ 198 (291)
T 3o07_A 122 AKDLGEALRRINE--GAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEK-GK 198 (291)
T ss_dssp ESSHHHHHHHHHH--TCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH-TS
T ss_pred CCCHHHHHHHHHC--CCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHc-cC
Confidence 5788999999886 4788776311 2 1 12347888888876 56
Q ss_pred CcEEEE--ecCCCHHHHHHHHHcCCcEEEe-----CCCChHHHHHHHHHHHHHh
Q 043479 47 LPVMVM--SSDDRESVIMKALASGVAFYIL-----KPLNPDDLKNVWQYAMTYK 93 (534)
Q Consensus 47 ipVIVL--Ss~~d~~~~~~AL~aGA~dyL~-----KP~s~eeL~~aI~~aL~~k 93 (534)
+|||++ ..-.+++.+.++++.|++++++ |.-++....+++..++...
T Consensus 199 IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~ 252 (291)
T 3o07_A 199 LPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF 252 (291)
T ss_dssp CSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred CCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence 999877 3444788899999999999864 4456788888887777543
No 214
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=51.62 E-value=16 Score=29.54 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=37.3
Q ss_pred CccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043479 161 KVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKY 210 (534)
Q Consensus 161 rv~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKy 210 (534)
+-.|+.+=..+|+++++.+| .. =++|++.|+ +-|...++.|..+|
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~G-~~--W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMYK-DD--WNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHSS-SC--HHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred CCCcCHHHHHHHHHHHHHhC-CC--HHHHHHHcC--CCCHHHHHHHHHHh
Confidence 34699999999999999999 32 488999875 78899999987654
No 215
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=51.44 E-value=36 Score=33.71 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=50.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCC-CCC-CCHHHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLH-MPE-MNGIELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~-mPd-mdGleLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
++.+.+|+.+.+. ..+|+|=+.-+ +.. .-.++...+|....| ++++|.-++-.+.+.+.++.++|++++|+
T Consensus 175 evh~~eEl~~A~~--~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 175 EVHDEAEMERALK--LSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLI 248 (272)
T ss_dssp EECSHHHHHHHTT--SCCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEE
T ss_pred EeCCHHHHHHHHh--cCCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4678888766654 46888766532 111 112566667766555 58888889988999999999999999986
No 216
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=50.91 E-value=40 Score=26.31 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=40.8
Q ss_pred CccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 043479 161 KVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAEQ 220 (534)
Q Consensus 161 rv~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~a~~ 220 (534)
+-.|+.+=...+++++..+|. -=+.|++.| ++-|...|+.|.++| +++....
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~---~W~~Ia~~~--~~Rt~~q~k~r~~~~---l~~~~~~ 60 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGR---RWTKISKLI--GSRTVLQVKSYARQY---FKNKVKC 60 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCS---CHHHHHHHH--SSSCHHHHHHHHHHH---HHHHSCS
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CHHHHHHHc--CCCCHHHHHHHHHHH---HHHHHhc
Confidence 446999999999999999985 247888876 589999999996655 4455444
No 217
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=50.63 E-value=47 Score=31.50 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=48.9
Q ss_pred CHHHHHHHHHhcCCce-EEEEeCCCC---CCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 5 RPVEALATVRIQRDID-LVVTDLHMP---EMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 5 s~~EALe~L~~~~~pD-LVLLDi~mP---dmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+..+..+.+.+ ..+| |.+.|+.-. ...-+++++++++.. .+|||+--.-.+.+.+.++++.||+..+.
T Consensus 36 ~~~~~a~~~~~-~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEK-RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHH-TTCSEEEEEETTTTTCSSCCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHH-cCCCEEEEEecCcccCCCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 34566666665 4566 455676432 223478899998765 59999988888889999999999988764
No 218
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=50.35 E-value=42 Score=34.44 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCCCC-HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPEMN-GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPdmd-GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.++.+.+ ..+|+|.+|....+.. -.+.++++++.. ++|||+- ...+.+.+..+.++||+.+..
T Consensus 107 ~e~a~~l~e-aGad~I~ld~a~G~~~~~~~~i~~i~~~~-~~~Vivg-~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVE-AGVDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVG-NVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHH-TTCSEEEECCSCCSBHHHHHHHHHHHHHC-CCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH-cCcCeEEEeCCCCCcHHHHHHHHHHHHhc-CCcEEEc-cCCCHHHHHHHHHcCcCEEEE
Confidence 344555544 5689999987654332 246778888776 5787762 234677888899999998876
No 219
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=50.04 E-value=51 Score=34.82 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPEM-NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPdm-dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.++.+.+ ..+|+|.++...... .-++.++++++..+++||++= ...+.+.+..+.++|++.+..
T Consensus 239 ~~~a~~l~~-aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g-~~~t~e~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 239 MERVEKLVK-AGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAG-NVATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp HHHHHHHHH-TTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH-hCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeC-CcCCHHHHHHHHHcCCCEEEE
Confidence 455555555 578999998764322 367889999998878888763 334567778889999998876
No 220
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=49.50 E-value=43 Score=34.39 Aligned_cols=79 Identities=8% Similarity=0.042 Sum_probs=52.8
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhC----CCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCCh
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEF----THLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNP 79 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~----p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~ 79 (534)
+.++|+++++.-.++++..++--++ +-++.+++|++.. ..+||+.-= ..+.....++++.|+.+++ .|+...
T Consensus 213 ~~~~ai~~~~~l~~~~i~~iE~P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~~ 289 (392)
T 3p3b_A 213 NLNLTKEVLAALSDVNLYWLEEAFH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIWP 289 (392)
T ss_dssp CHHHHHHHHHHTTTSCEEEEECSSS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTTB
T ss_pred CHHHHHHHHHHHHhcCCCEEecCCc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCcccc
Confidence 5678888876645678888876666 5577778887751 347876544 4455677888888866655 788764
Q ss_pred HHHHHHHH
Q 043479 80 DDLKNVWQ 87 (534)
Q Consensus 80 eeL~~aI~ 87 (534)
-|.++++
T Consensus 290 -Git~~~~ 296 (392)
T 3p3b_A 290 -GFTHWME 296 (392)
T ss_dssp -CHHHHHH
T ss_pred -CHHHHHH
Confidence 4444433
No 221
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=49.17 E-value=77 Score=31.47 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=50.5
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCCC-------CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMPE-------MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mPd-------mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+.+.+++..... ...|.|+++-.-.+ ...+++++++++.. ++|||+-.+-.+.+.+.+++..||+++..
T Consensus 125 v~t~~~a~~~~~--~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~-~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 125 CTAVRHALKAER--LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL-RVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp ESSHHHHHHHHH--TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHH--cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 456777776655 45898888632221 25678888887654 58998888887888888999999999864
No 222
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=49.04 E-value=95 Score=31.89 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCceEEEEeCCC--CC---CCHHHHHHHHHhhCCCCcEEEEecCCC-HHHHHHHHHcCCcEEEeC----
Q 043479 6 PVEALATVRIQRDIDLVVTDLHM--PE---MNGIELQKEINEEFTHLPVMVMSSDDR-ESVIMKALASGVAFYILK---- 75 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~m--Pd---mdGleLL~~Lr~~~p~ipVIVLSs~~d-~~~~~~AL~aGA~dyL~K---- 75 (534)
..+|++++..... +||||...- |. .-.+..+..|++.++++||. +++|.. ......|+.+||+ +|.|
T Consensus 163 i~~Ave~i~~~G~-~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg-~sdHt~G~~~~~AAvAlGA~-iIEkH~tl 239 (349)
T 2wqp_A 163 IKKSVEIIREAGV-PYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIG-LSDHTLDNYACLGAVALGGS-ILERHFTD 239 (349)
T ss_dssp HHHHHHHHHHHTC-CEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEE-EECCSSSSHHHHHHHHHTCC-EEEEEBCS
T ss_pred HHHHHHHHHHcCC-CEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEE-eCCCCCcHHHHHHHHHhCCC-EEEeCCCc
Confidence 3457777765333 999986432 21 12345677888888679985 677764 5567778899999 7766
Q ss_pred -----------CCChHHHHHHHHHHHHH
Q 043479 76 -----------PLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 76 -----------P~s~eeL~~aI~~aL~~ 92 (534)
.+++++|...++.+..-
T Consensus 240 d~a~~G~D~~~SL~p~ef~~lv~~ir~~ 267 (349)
T 2wqp_A 240 RMDRPGPDIVCSMNPDTFKELKQGAHAL 267 (349)
T ss_dssp CTTCCSTTGGGCBCHHHHHHHHHHHHHH
T ss_pred cccCCCCChhhhCCHHHHHHHHHHHHHH
Confidence 24467888777766543
No 223
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=48.97 E-value=36 Score=34.03 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHH
Q 043479 35 ELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYA 89 (534)
Q Consensus 35 eLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~a 89 (534)
+.++.+|+..+...+|.++. .+.+.+.+++++||+.++..++.++.++++++.+
T Consensus 184 ~av~~ar~~~~~~~~IgVev-~t~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 184 EAVRRAKARAPHYLKVEVEV-RSLEELEEALEAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp HHHHHHHHHSCTTSCEEEEE-SSHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEe-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45777787776644444455 4477788999999999989999999998777654
No 224
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=48.26 E-value=42 Score=33.69 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=48.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 043479 18 DIDLVVTDLHMPEMNGIELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYILKP 76 (534)
Q Consensus 18 ~pDLVLLDi~mPdmdGleLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP 76 (534)
..+||.+|..- .....++++++++... .+||++=-+-.+.+.+.+++++||+.++.-.
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 46899999755 4445689999998764 6899988888899999999999999998765
No 225
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=48.02 E-value=35 Score=37.33 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 8 EALATVRIQRDIDLVVTDLHMPEM-NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 8 EALe~L~~~~~pDLVLLDi~mPdm-dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
|-.+.|.+ ...|+|++|.-.... .-++++++|++.+|+++||. ....+.+.....+++||+.+.
T Consensus 284 eR~~aLv~-AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~via-GNVaT~e~a~~Li~aGAD~vk 348 (556)
T 4af0_A 284 DRLKLLAE-AGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIA-GNVVTREQAAQLIAAGADGLR 348 (556)
T ss_dssp HHHHHHHH-TTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHh-cCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEe-ccccCHHHHHHHHHcCCCEEe
Confidence 33444444 568999999876543 34788999999999888764 444567777888899999874
No 226
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=47.90 E-value=28 Score=35.70 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=49.6
Q ss_pred cCHHHHHHHHHhc--CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCc
Q 043479 4 TRPVEALATVRIQ--RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVA 70 (534)
Q Consensus 4 ss~~EALe~L~~~--~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~ 70 (534)
.+..||++.+... ..-|+|++- |.+.-+++++.+++.+|++|+.+.-...+-..+..|.+.|..
T Consensus 240 aN~~EAlre~~~Di~EGAD~vMVK---Pal~YLDIi~~vk~~~p~~P~aaYqVSGEYAMikaAa~~Gwi 305 (342)
T 1h7n_A 240 AGRGLARRALERDMSEGADGIIVK---PSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVV 305 (342)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEEE---SSGGGHHHHHHHHHHTTTSCEEEEECHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHhhHHhCCCeEEEe---cCccHHHHHHHHHHhccCCCeEEEEcCcHHHHHHHHHHcCCc
Confidence 4677888776542 568999987 677779999999999989999998776666666666677754
No 227
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=47.83 E-value=85 Score=31.79 Aligned_cols=69 Identities=25% Similarity=0.252 Sum_probs=49.8
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCC---------CC-------CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHH
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHM---------PE-------MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA 66 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~m---------Pd-------mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~ 66 (534)
+.+.+++....+ ..+|.|+++-.. ++ ...+++++++++.. ++|||+..+-.+.+.+.+++.
T Consensus 152 v~t~~~a~~a~~--~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~-~iPViaaGGI~~~~~~~~~l~ 228 (369)
T 3bw2_A 152 ATTPEEARAVEA--AGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV-DIPVVAAGGIMRGGQIAAVLA 228 (369)
T ss_dssp ESSHHHHHHHHH--TTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHH
T ss_pred CCCHHHHHHHHH--cCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc-CceEEEECCCCCHHHHHHHHH
Confidence 456777665554 458999985321 10 23488888888764 589988877778899999999
Q ss_pred cCCcEEEe
Q 043479 67 SGVAFYIL 74 (534)
Q Consensus 67 aGA~dyL~ 74 (534)
.||+++..
T Consensus 229 ~GAd~V~v 236 (369)
T 3bw2_A 229 AGADAAQL 236 (369)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 99998764
No 228
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=47.81 E-value=16 Score=30.13 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=34.7
Q ss_pred CccCCchhhHHHHHHHHHhc---cCCC----------cHHHHHHHcCC---CCCCHHHHHHHHHHHHHH
Q 043479 161 KVAWTDSLHNRFLQAIRHIG---LEKA----------VPKKILEFMNV---PGLTRENVASHLQKYRIF 213 (534)
Q Consensus 161 rv~Wt~eLh~RFleaLe~LG---lekA----------vpK~ILe~M~V---~GLT~~tVaSHLQKyRl~ 213 (534)
.-+|.++|..-|++++..+- --+. -+..|.++... +--|+..|.||||-.|..
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence 34799999999999999982 2221 12223332221 345799999999977664
No 229
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=47.58 E-value=25 Score=33.30 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+-+++.+++ .+||+| + .||+.-. ++++++++.. .+|||+=-.-.+.+.+..|+++||+...+
T Consensus 117 ~~~~~~i~~-~~PD~i--E-iLPGi~p-~iI~~i~~~~-~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQK-VQPDCI--E-LLPGIIP-EQVQKMTQKL-HIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHH-HCCSEE--E-EECTTCH-HHHHHHHHHH-CCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhh-cCCCEE--E-ECCchhH-HHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 346677776 679987 2 2577543 7899998764 58998877788999999999999998865
No 230
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=47.04 E-value=69 Score=32.04 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=50.9
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCC-----CCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMP-----EMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mP-----dmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+.+.+++....+ ..+|.|+++-.-. ....+++++++++.. ++|||+..+-.+.+.+.+++.+||+++..
T Consensus 131 v~s~~~a~~a~~--~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 131 VASDSLARMVER--AGADAVIAEGMESGGHIGEVTTFVLVNKVSRSV-NIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp ESSHHHHHHHHH--TTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cCCHHHHHHHHH--cCCCEEEEECCCCCccCCCccHHHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 456677766554 3589888864221 235678888887654 58999888888899999999999999864
No 231
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=46.88 E-value=92 Score=29.25 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhcCCceEE-EEeCCCCCC---CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 5 RPVEALATVRIQRDIDLV-VTDLHMPEM---NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLV-LLDi~mPdm---dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
++.+..+.+.+ ...|.| +.|...... ..+++++++++.. .+||++.....+.+.+.++++.||+.++.-
T Consensus 31 d~~~~a~~~~~-~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSE-IGIDELVFLDITASVEKRKTMLELVEKVAEQI-DIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHH-TTCCEEEEEESSCSSSHHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHH-cCCCEEEEECCchhhcCCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 55566666665 456644 455432221 2356667777643 599999888888888999999999998764
No 232
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=46.67 E-value=77 Score=32.47 Aligned_cols=82 Identities=5% Similarity=-0.055 Sum_probs=52.4
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|+++++.-.++++..++--++. +-++.+++|++..+ +||+.-=...+.....++++.++.+++ .|+...--|.
T Consensus 230 ~~~~ai~~~~~l~~~~i~~iE~P~~~-~~~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 307 (410)
T 2gl5_A 230 GTNSAIQFAKAIEKYRIFLYEEPIHP-LNSDNMQKVSRSTT-IPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGIT 307 (410)
T ss_dssp CHHHHHHHHHHHGGGCEEEEECSSCS-SCHHHHHHHHHHCS-SCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHHhcCCCeEECCCCh-hhHHHHHHHHhhCC-CCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 46677776654345677777654443 34777788887653 787654444466778888888866555 7886654555
Q ss_pred HHHHH
Q 043479 84 NVWQY 88 (534)
Q Consensus 84 ~aI~~ 88 (534)
++++-
T Consensus 308 ~~~~i 312 (410)
T 2gl5_A 308 EGKKI 312 (410)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 233
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=46.66 E-value=1e+02 Score=26.85 Aligned_cols=75 Identities=9% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHH
Q 043479 6 PVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNV 85 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~a 85 (534)
.++..+++.. .|++|+=.. .+.-+..+++.+.. .+|||+. . .....+.+..+..+++. +.+.++|.++
T Consensus 88 ~~e~~~~~~~---adi~v~ps~-~e~~~~~~~Eama~---G~PvI~~-~---~~~~~e~i~~~~~g~~~-~~d~~~l~~~ 155 (177)
T 2f9f_A 88 EEELIDLYSR---CKGLLCTAK-DEDFGLTPIEAMAS---GKPVIAV-N---EGGFKETVINEKTGYLV-NADVNEIIDA 155 (177)
T ss_dssp HHHHHHHHHH---CSEEEECCS-SCCSCHHHHHHHHT---TCCEEEE-S---SHHHHHHCCBTTTEEEE-CSCHHHHHHH
T ss_pred HHHHHHHHHh---CCEEEeCCC-cCCCChHHHHHHHc---CCcEEEe-C---CCCHHHHhcCCCccEEe-CCCHHHHHHH
Confidence 3455556654 588776332 33446667777654 4777653 2 23445566678889999 9999999999
Q ss_pred HHHHHHH
Q 043479 86 WQYAMTY 92 (534)
Q Consensus 86 I~~aL~~ 92 (534)
|.+++..
T Consensus 156 i~~l~~~ 162 (177)
T 2f9f_A 156 MKKVSKN 162 (177)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999854
No 234
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=46.60 E-value=89 Score=31.35 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 31 MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 31 mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
....+.++++++..+++|||...+-.+.+.+.+++.+||+.+..=
T Consensus 236 ~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 236 ISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred ccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 456777888877656799999999999999999999999998753
No 235
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=46.56 E-value=41 Score=33.60 Aligned_cols=55 Identities=15% Similarity=0.287 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCC-CcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHHH
Q 043479 34 IELQKEINEEFTH-LPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYAM 90 (534)
Q Consensus 34 leLL~~Lr~~~p~-ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL 90 (534)
.+.++.+|+..|. .+|.+ .. ++.+.+.+++++||+.++..++++++++++++.+-
T Consensus 180 ~~av~~ar~~~~~~~~I~V-EV-~tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~ 235 (285)
T 1o4u_A 180 ERAVQEVRKIIPFTTKIEV-EV-ENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIK 235 (285)
T ss_dssp HHHHHHHHTTSCTTSCEEE-EE-SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEE-Ee-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 4567777877776 45555 43 35788889999999999899999999999888764
No 236
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=46.22 E-value=1.1e+02 Score=29.18 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=51.3
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCC-CC--HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe------C
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPE-MN--GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL------K 75 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPd-md--GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~------K 75 (534)
+..+.++.+....--.+++.|+.--+ +. .+++++.+++..+++|||+--+-.+.+.+.+ ++.++.+.+. .
T Consensus 152 ~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~-l~~~~~gvivg~Al~~g 230 (243)
T 4gj1_A 152 KLMEVLDFYSNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFPNICIQASGGVASLKDLEN-LKGICSGVIVGKALLDG 230 (243)
T ss_dssp BHHHHHHHHHTTTCCEEEEEETTC-----CCCHHHHHHHHHHCTTSEEEEESCCCSHHHHHH-TTTTCSEEEECHHHHTT
T ss_pred hHHHHHHHHhhcCCcEEEeeeecccccccCCCHHHHHHHHHhcCCCCEEEEcCCCCHHHHHH-HHccCchhehHHHHHCC
Confidence 34566666655233468899987654 22 3578999988888899998877777777655 4666777764 3
Q ss_pred CCChHHHHHH
Q 043479 76 PLNPDDLKNV 85 (534)
Q Consensus 76 P~s~eeL~~a 85 (534)
-++.+|+++.
T Consensus 231 ~i~l~ea~~~ 240 (243)
T 4gj1_A 231 VFSVEEGIRC 240 (243)
T ss_dssp SSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4555555443
No 237
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=46.19 E-value=27 Score=35.62 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=50.1
Q ss_pred cCHHHHHHHHHhc--CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcE
Q 043479 4 TRPVEALATVRIQ--RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAF 71 (534)
Q Consensus 4 ss~~EALe~L~~~--~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~d 71 (534)
.+..||++.+... ..-|+|++- |.+.-+++++.+++.+|++|+.+.-...+-..+..|.+.|..+
T Consensus 229 aN~~EAlre~~~Di~EGAD~vMVK---Pal~YLDIi~~vk~~~p~~P~aaYqVSGEYAMikaAa~~GwiD 295 (330)
T 1pv8_A 229 GARGLALRAVDRDVREGADMLMVK---PGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFD 295 (330)
T ss_dssp TCHHHHHHHHHHHHHTTCSBEEEE---SCGGGHHHHHHHHHHSTTSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHhhHHhCCceEEEe---cCccHHHHHHHHHHhcCCCCeEEEEcCcHHHHHHHHHHcCCcc
Confidence 4677888776543 568999987 6777799999999999899999987766666666677777543
No 238
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=45.99 E-value=44 Score=31.48 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=51.8
Q ss_pred CHHHHHHHHHhcCCce-EEEEeCCCCC---CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHc---CCcEEEe---
Q 043479 5 RPVEALATVRIQRDID-LVVTDLHMPE---MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS---GVAFYIL--- 74 (534)
Q Consensus 5 s~~EALe~L~~~~~pD-LVLLDi~mPd---mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~a---GA~dyL~--- 74 (534)
+..|.++.+.+ ..+| |++.++.-.. .-.+++++++++.. .+|||+..+-.+.+.+.++++. ||++++.
T Consensus 147 ~~~e~~~~~~~-~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~-~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNK-EGCARYVVTDIAKDGTLQGPNLELLKNVCAAT-DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHH-TTCCCEEEEEC-------CCCHHHHHHHHHTC-SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHh-CCCCEEEEeccCcccccCCCCHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 45565555555 4577 4556654221 12478889988754 5999998888888889999998 9999864
Q ss_pred ---CCCChHHHHHH
Q 043479 75 ---KPLNPDDLKNV 85 (534)
Q Consensus 75 ---KP~s~eeL~~a 85 (534)
.|++..++.+.
T Consensus 225 l~~~~~~~~~~~~~ 238 (244)
T 1vzw_A 225 LYAKAFTLEEALEA 238 (244)
T ss_dssp HHTTSSCHHHHHHH
T ss_pred HHcCCCCHHHHHHH
Confidence 34555554443
No 239
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=45.78 E-value=23 Score=36.48 Aligned_cols=61 Identities=8% Similarity=0.005 Sum_probs=47.3
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe------C-CCChHHHHHHHHHHHHHhh
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL------K-PLNPDDLKNVWQYAMTYKK 94 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~------K-P~s~eeL~~aI~~aL~~k~ 94 (534)
+++++++++..+++|||...+-.+.+.+.+++.+||+.+.. . |.-..++.+.++..+....
T Consensus 265 ~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~~~G 332 (354)
T 4ef8_A 265 LANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKR 332 (354)
T ss_dssp HHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHHHcC
Confidence 77888888876689999999999999999999999988753 3 6555666666666665543
No 240
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=45.77 E-value=28 Score=28.19 Aligned_cols=41 Identities=5% Similarity=0.192 Sum_probs=34.9
Q ss_pred chhhHHHHHHHHHhccCC-CcHHHHHHHcCCCCCCHHHHHHHHHH
Q 043479 166 DSLHNRFLQAIRHIGLEK-AVPKKILEFMNVPGLTRENVASHLQK 209 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlek-AvpK~ILe~M~V~GLT~~tVaSHLQK 209 (534)
.+.+++...++..|+.++ ++.+.|+..++ +++.+|..+|.+
T Consensus 11 ~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg---~sK~~vNr~LY~ 52 (75)
T 1sfu_A 11 AEIFSLVKKEVLSLNTNDYTTAISLSNRLK---INKKKINQQLYK 52 (75)
T ss_dssp HHHHHHHHHHHHTSCTTCEECHHHHHHHTT---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHC---CCHHHHHHHHHH
Confidence 367888889999998777 88899999999 899999888754
No 241
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=45.26 E-value=39 Score=31.65 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=48.1
Q ss_pred ecCHHHHHHHHHhcCCceEE---EEeCCCC----CCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 3 VTRPVEALATVRIQRDIDLV---VTDLHMP----EMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLV---LLDi~mP----dmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+.+.+++...+. ...|+| +..+.-. ....+++++++++. ++||++..+-.+.+.+.+++++||+.++.=
T Consensus 140 ~~t~~ea~~a~~--~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 140 ISTFDEGLVAHQ--AGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp CSSHHHHHHHHH--TTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred CCCHHHHHHHHH--cCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 346677766655 357887 3322111 12346788888875 699998888888999999999999998753
No 242
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=44.66 E-value=32 Score=27.34 Aligned_cols=41 Identities=10% Similarity=0.232 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHhcc-CCCcHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043479 167 SLHNRFLQAIRHIGL-EKAVPKKILEFMNVPGLTRENVASHLQKY 210 (534)
Q Consensus 167 eLh~RFleaLe~LGl-ekAvpK~ILe~M~V~GLT~~tVaSHLQKy 210 (534)
+...+.++++...+. +....++|++.++ +++.+|..||.+.
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg---vs~~tV~~~L~~L 55 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLG---TPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHC---cCHHHHHHHHHHH
Confidence 344555666666662 3466799999999 8999999998775
No 243
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=44.28 E-value=64 Score=30.19 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=52.2
Q ss_pred CHHHHHHHHHhcCCceEE-EEeCCCCC---CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHc---CCcEEEe---
Q 043479 5 RPVEALATVRIQRDIDLV-VTDLHMPE---MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALAS---GVAFYIL--- 74 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLV-LLDi~mPd---mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~a---GA~dyL~--- 74 (534)
+..+.++.+.+ ..+|.| +.+..-.+ .-.+++++++++. .++|||...+-.+.+.+.++++. ||++++.
T Consensus 150 ~~~e~~~~~~~-~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~-~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~a 227 (244)
T 2y88_A 150 DLWDVLERLDS-EGCSRFVVTDITKDGTLGGPNLDLLAGVADR-TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKA 227 (244)
T ss_dssp EHHHHHHHHHH-TTCCCEEEEETTTTTTTSCCCHHHHHHHHTT-CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHh-CCCCEEEEEecCCccccCCCCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHH
Confidence 34565565655 457754 56654322 1257788888865 46899998888888888899988 9998864
Q ss_pred ---CCCChHHHHH
Q 043479 75 ---KPLNPDDLKN 84 (534)
Q Consensus 75 ---KP~s~eeL~~ 84 (534)
.|..+.++++
T Consensus 228 l~~~~~~~~~~~~ 240 (244)
T 2y88_A 228 LYARRFTLPQALA 240 (244)
T ss_dssp HHTTSSCHHHHHH
T ss_pred HHCCCcCHHHHHH
Confidence 3555554443
No 244
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=44.27 E-value=43 Score=33.86 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=45.8
Q ss_pred CeecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 1 vtass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
|++.+.+|+.+.++. ..|+|++|-. +--++-+.++.... -..|..|+--+.+.+.+..+.|++.+-
T Consensus 212 VEv~tl~e~~eAl~a--GaDiImLDn~----s~~~l~~av~~~~~-~v~leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 212 IECDNISQVEESLSN--NVDMILLDNM----SISEIKKAVDIVNG-KSVLEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EEESSHHHHHHHHHT--TCSEEEEESC----CHHHHHHHHHHHTT-SSEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEECCHHHHHHHHHc--CCCEEEECCC----CHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 467889999999875 5899999953 33333333333333 345677888888888888889988664
No 245
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=43.88 E-value=52 Score=33.55 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=41.0
Q ss_pred CceEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 18 DIDLVVTDLHMPE-MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 18 ~pDLVLLDi~mPd-mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+|+|.+|+...+ .+-++.+++|++..+++||++=+ ..+.+.+..+.++||+.+.+
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~-v~t~e~A~~a~~aGaD~I~v 188 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGN-VVTGEMVEELILSGADIIKV 188 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEe-CCCHHHHHHHHHhCCCEEEE
Confidence 4788888865432 23567888898888778887533 34577888999999998855
No 246
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=43.68 E-value=1.3e+02 Score=25.24 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=41.8
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCC-------------CHHHHHHHHHhhCCCCcEEEEecCCCH---HHH-HHHHHc
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEM-------------NGIELQKEINEEFTHLPVMVMSSDDRE---SVI-MKALAS 67 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdm-------------dGleLL~~Lr~~~p~ipVIVLSs~~d~---~~~-~~AL~a 67 (534)
+.+|+.+.+.. ...+++|+|++-+.. .--++...+....++.+||+++..... ..+ ....+.
T Consensus 18 s~~el~~~l~~-~~~~~~liDvR~~~e~~~~ghIpgA~nip~~~l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~ 96 (124)
T 3flh_A 18 DHHTVLADMQN-ATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSA 96 (124)
T ss_dssp CHHHHHHHHHH-TCCCEEEEECCCSCHHHHCCEETTCEECCHHHHHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHc-CCCCEEEEECCCHHHHHhcCcCCCCEECCHHHHHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHc
Confidence 56778888876 445799999987531 223444455555566788888876554 223 333456
Q ss_pred CCcEEEe
Q 043479 68 GVAFYIL 74 (534)
Q Consensus 68 GA~dyL~ 74 (534)
|..-|+.
T Consensus 97 G~~v~~l 103 (124)
T 3flh_A 97 GFEAYEL 103 (124)
T ss_dssp TCEEEEE
T ss_pred CCeEEEe
Confidence 7653333
No 247
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=43.43 E-value=53 Score=32.70 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=43.8
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHHH
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYAM 90 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL 90 (534)
-+.++.+++..|..+|.+-.. +.+.+.+++++|++-++...+++++++++++.+-
T Consensus 182 ~~av~~ar~~~~~~~I~Vev~--t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l~ 236 (284)
T 1qpo_A 182 VDALRAVRNAAPDLPCEVEVD--SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRD 236 (284)
T ss_dssp HHHHHHHHHHCTTSCEEEEES--SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 357777888877777666443 4688889999999999898999999999988764
No 248
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=43.36 E-value=68 Score=32.99 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 8 EALATVRIQRDIDLVVTDLHMPEM-NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 8 EALe~L~~~~~pDLVLLDi~mPdm-dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+.++.+.+ ..+|+|.++....+. .-+++++++++..+++||++-. ..+.+.+..+.++|++.+..
T Consensus 156 ~~a~~~~~-~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~-v~~~~~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 156 ERVEELVK-AHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGN-IVTKEAALDLISVGADCLKV 221 (404)
T ss_dssp HHHHHHHH-TTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEE-ECSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHH-CCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcC-CCcHHHHHHHHhcCCCEEEE
Confidence 33444444 468988886433221 2467888888887778888622 33567788899999998877
No 249
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=42.90 E-value=1.5e+02 Score=30.09 Aligned_cols=83 Identities=8% Similarity=0.085 Sum_probs=54.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++.+++-=++. +-++.+++|++..+ +||+.-=...+.....++++.|+.+++ .|+...--|.
T Consensus 209 ~~~~a~~~~~~l~~~~i~~iEqP~~~-~d~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit 286 (372)
T 3tj4_A 209 DLPTCQRFCAAAKDLDIYWFEEPLWY-DDVTSHARLARNTS-IPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGIT 286 (372)
T ss_dssp CHHHHHHHHHHTTTSCEEEEESCSCT-TCHHHHHHHHHHCS-SCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHhhcCCCEEECCCCc-hhHHHHHHHHhhcC-CCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 56778877765456788888754443 34677788887654 787654344456777888888866655 8887654555
Q ss_pred HHHHHH
Q 043479 84 NVWQYA 89 (534)
Q Consensus 84 ~aI~~a 89 (534)
.+++-+
T Consensus 287 ~~~~ia 292 (372)
T 3tj4_A 287 EYIQVA 292 (372)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 250
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=42.64 E-value=1e+02 Score=30.80 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=49.7
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCC-----CCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMP-----EMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mP-----dmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+.+.+++....+ ..+|.|+++-.-. ....+++++++++.. ++|||+..+-.+.+.+.+++..||+++..
T Consensus 117 v~~~~~a~~~~~--~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~-~iPViaaGGI~~~~~~~~al~~GAdgV~v 190 (332)
T 2z6i_A 117 VPSVALAKRMEK--IGADAVIAEGMEAGGHIGKLTTMTLVRQVATAI-SIPVIAAGGIADGEGAAAGFMLGAEAVQV 190 (332)
T ss_dssp ESSHHHHHHHHH--TTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred eCCHHHHHHHHH--cCCCEEEEECCCCCCCCCCccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEe
Confidence 345666555443 4589888863211 235678888888765 59999888888889999999999998754
No 251
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=42.30 E-value=25 Score=32.75 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=42.4
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCC-CC-HHHHHHHHHhhC--CCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPE-MN-GIELQKEINEEF--THLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPd-md-GleLL~~Lr~~~--p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
..++.++.+++ ..||+|.+-..+.. +. --++++.+++.. +++||++--...+.+. +.+.|++.|..
T Consensus 127 p~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~~~~---~~~~gad~~~~ 196 (210)
T 1y80_A 127 EPGKFVEAVKK-YQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLSQDF---ADEIGADGYAP 196 (210)
T ss_dssp CHHHHHHHHHH-HCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCCHHH---HHHHTCSEECS
T ss_pred CHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEECCCCCHHH---HHHcCCeEEEC
Confidence 45667777776 68999999887653 22 334667777654 4577776655555433 35578887643
No 252
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=42.15 E-value=76 Score=25.10 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=35.4
Q ss_pred ccCCchhhHHHHHHHHHhccCCC-cHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLEKA-VPKKILEFMNVPGLTRENVASHLQKY 210 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGlekA-vpK~ILe~M~V~GLT~~tVaSHLQKy 210 (534)
-.||.+=...|..++..++.+.. -=.+|++.|+ -|.+.|+.|.+++
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg---Rt~~eV~~~y~~L 55 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG---RSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT---SCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 36999999999999999964432 1245888885 8999999986554
No 253
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=41.84 E-value=64 Score=32.76 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=51.3
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCC-cEEEeCCCCh---H
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGV-AFYILKPLNP---D 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA-~dyL~KP~s~---e 80 (534)
+.++|++.++.-.++++ .++--++ .++.+++|++.. .+||+.-=...+.....++++.|+ +.+..|+... .
T Consensus 201 ~~~~a~~~~~~l~~~~i-~iE~P~~---~~~~~~~l~~~~-~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit 275 (379)
T 2rdx_A 201 RVDNAIRLARATRDLDY-ILEQPCR---SYEECQQVRRVA-DQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLS 275 (379)
T ss_dssp CHHHHHHHHHHTTTSCC-EEECCSS---SHHHHHHHHTTC-CSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHH
T ss_pred CHHHHHHHHHHHHhCCe-EEeCCcC---CHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHH
Confidence 56777777765345677 7664444 577788887755 488775444456777888888875 5556888764 4
Q ss_pred HHHHHHHHH
Q 043479 81 DLKNVWQYA 89 (534)
Q Consensus 81 eL~~aI~~a 89 (534)
+.++++..+
T Consensus 276 ~~~~i~~~A 284 (379)
T 2rdx_A 276 KARRTRDFL 284 (379)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 254
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=41.20 E-value=1.4e+02 Score=28.53 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCC--HHH----HHHHHHcCCcEEEe-----C
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDR--ESV----IMKALASGVAFYIL-----K 75 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d--~~~----~~~AL~aGA~dyL~-----K 75 (534)
.++.+.+.+ ...|+|.+.. + -+++.++++++.. .+||++..+... .+. +.++++.||+++.. +
T Consensus 169 ~~~a~~a~~-~Gad~i~~~~--~--~~~~~l~~i~~~~-~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~ 242 (273)
T 2qjg_A 169 AHAARLGAE-LGADIVKTSY--T--GDIDSFRDVVKGC-PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQ 242 (273)
T ss_dssp HHHHHHHHH-TTCSEEEECC--C--SSHHHHHHHHHHC-SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHT
T ss_pred HHHHHHHHH-cCCCEEEECC--C--CCHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhC
Confidence 344344444 5689888874 2 4688899988765 489998877663 333 66677899998853 3
Q ss_pred CCChHHHHHHHHHHH
Q 043479 76 PLNPDDLKNVWQYAM 90 (534)
Q Consensus 76 P~s~eeL~~aI~~aL 90 (534)
.-++.+..+.+..++
T Consensus 243 ~~~~~~~~~~l~~~~ 257 (273)
T 2qjg_A 243 HDDVVGITRAVCKIV 257 (273)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 334555444454444
No 255
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=40.72 E-value=87 Score=30.98 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCceEEEEe-CC--CCC----CCHHHHHHHHHhhCCCCcEEEEecCCCH------HHHHHHHHcCCcEE
Q 043479 6 PVEALATVRIQRDIDLVVTD-LH--MPE----MNGIELQKEINEEFTHLPVMVMSSDDRE------SVIMKALASGVAFY 72 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLD-i~--mPd----mdGleLL~~Lr~~~p~ipVIVLSs~~d~------~~~~~AL~aGA~dy 72 (534)
...|++.+......+++||. .. .|. .-.+..+..+++.+ ++|||+.+++... .....++..||+++
T Consensus 161 i~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~-~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl 239 (276)
T 1vs1_A 161 LLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEAT-HLPVIVDPSHPAGRRSLVPALAKAGLAAGADGL 239 (276)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHB-SSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHh-CCCEEEeCCCCCCccchHHHHHHHHHHcCCCEE
Confidence 44567777654557999988 21 222 12344466676654 5888888877533 55667888999976
Q ss_pred E-eCCC-------------ChHHHHHHHHHHH
Q 043479 73 I-LKPL-------------NPDDLKNVWQYAM 90 (534)
Q Consensus 73 L-~KP~-------------s~eeL~~aI~~aL 90 (534)
+ .|-+ ++++|...++.+.
T Consensus 240 ~IE~H~~~d~a~~D~~~sl~p~~~~~lv~~i~ 271 (276)
T 1vs1_A 240 IVEVHPNPEEALSDAKQQLTPGEFARLMGELR 271 (276)
T ss_dssp EEEBCSSGGGCSSCGGGCBCHHHHHHHHHHHH
T ss_pred EEEecCCcccCCCchhcCCCHHHHHHHHHHHH
Confidence 5 5544 5566666665543
No 256
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=40.49 E-value=76 Score=32.60 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=34.9
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 34 IELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 34 leLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
+++++++++..+ ++|||...+-.+.+.+.+++.+||+.+.
T Consensus 285 ~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~ 325 (367)
T 3zwt_A 285 TQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQ 325 (367)
T ss_dssp HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 478888888764 6999999999999999999999998875
No 257
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=40.22 E-value=73 Score=32.42 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=45.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
.+.+.+|+.+.++. .+|+|.+|- ++--++-+.++...++ ..|..|+.-+.+.+.+..+.|++.+-
T Consensus 237 EVdtldea~eAl~a--GaD~I~LDn----~~~~~l~~av~~l~~~-v~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 237 ETETLAELEEAISA--GADIIMLDN----FSLEMMREAVKINAGR-AALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp EESSHHHHHHHHHT--TCSEEEEES----CCHHHHHHHHHHHTTS-SEEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred EECCHHHHHHHHHc--CCCEEEECC----CCHHHHHHHHHHhCCC-CeEEEECCCCHHHHHHHHHcCCCEEE
Confidence 57788888888874 589999996 3333333333333344 45667888888888888899997764
No 258
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=40.13 E-value=21 Score=33.92 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhcCCceEEEE--eCCCCC-CC-HHHHHHHHHhhCC--CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 5 RPVEALATVRIQRDIDLVVT--DLHMPE-MN-GIELQKEINEEFT--HLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLL--Di~mPd-md-GleLL~~Lr~~~p--~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
..++.++.+++ ..||+|.+ -..+.. +. --++++.|++... ++||++--...+.+. +-+.||+.|-.
T Consensus 131 p~e~iv~~~~~-~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~ 202 (215)
T 3ezx_A 131 LNENVVEEAAK-HKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAE 202 (215)
T ss_dssp CHHHHHHHHHH-TTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCS
T ss_pred CHHHHHHHHHH-cCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEEC
Confidence 46677788887 78999999 776642 33 3457777877654 678766555555443 44679887743
No 259
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=39.87 E-value=90 Score=31.28 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=55.9
Q ss_pred CeecCHHHHHHHHHhcCCceEEEEeCCC--CC-CCHHHHHHHHHhhCCCCcEEEEecCCCH-------------HHHHHH
Q 043479 1 VTVTRPVEALATVRIQRDIDLVVTDLHM--PE-MNGIELQKEINEEFTHLPVMVMSSDDRE-------------SVIMKA 64 (534)
Q Consensus 1 vtass~~EALe~L~~~~~pDLVLLDi~m--Pd-mdGleLL~~Lr~~~p~ipVIVLSs~~d~-------------~~~~~A 64 (534)
+++.+.++++...+.. .|-|=++-.+ ++ ..++.+++.+++.. ++||.+|.-.... +.+..+
T Consensus 44 vc~~s~~~a~~A~~gG--AdRIELc~~l~~GGlTPS~g~i~~a~~~~-~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~ 120 (287)
T 3iwp_A 44 VCVDSVESAVNAERGG--ADRIELCSGLSEGGTTPSMGVLQVVKQSV-QIPVFVMIRPRGGDFLYSDREIEVMKADIRLA 120 (287)
T ss_dssp EEESSHHHHHHHHHHT--CSEEEECBCGGGTCBCCCHHHHHHHHTTC-CSCEEEECCSSSSCSCCCHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhC--CCEEEECCCCCCCCCCCCHHHHHHHHHhc-CCCeEEEEecCCCCcccCHHHHHHHHHHHHHH
Confidence 4678899998888752 3433333333 33 44788999998754 5999888765543 467778
Q ss_pred HHcCCcEEEeCC------CChHHHHHHHHH
Q 043479 65 LASGVAFYILKP------LNPDDLKNVWQY 88 (534)
Q Consensus 65 L~aGA~dyL~KP------~s~eeL~~aI~~ 88 (534)
.++||++++.=- ++.+.+.+.|..
T Consensus 121 ~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 121 KLYGADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp HHTTCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred HHcCCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 899999997652 344555555543
No 260
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=39.71 E-value=1e+02 Score=30.00 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHH
Q 043479 6 PVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNV 85 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~a 85 (534)
..+..+++.. .|++|+-..-.+.-|..+++.+.. .+|||+. .. ....+.+..|..+++.+|.+.++|.++
T Consensus 273 ~~~~~~~~~~---adv~v~ps~~~e~~~~~~~Ea~a~---G~PvI~~-~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~ 342 (406)
T 2gek_A 273 DATKASAMRS---ADVYCAPHLGGESFGIVLVEAMAA---GTAVVAS-DL---DAFRRVLADGDAGRLVPVDDADGMAAA 342 (406)
T ss_dssp HHHHHHHHHH---SSEEEECCCSCCSSCHHHHHHHHH---TCEEEEC-CC---HHHHHHHTTTTSSEECCTTCHHHHHHH
T ss_pred HHHHHHHHHH---CCEEEecCCCCCCCchHHHHHHHc---CCCEEEe-cC---CcHHHHhcCCCceEEeCCCCHHHHHHH
Confidence 3455566654 588887532233446677777764 3676642 22 445567777888999999999999999
Q ss_pred HHHHHHH
Q 043479 86 WQYAMTY 92 (534)
Q Consensus 86 I~~aL~~ 92 (534)
|.+++..
T Consensus 343 i~~l~~~ 349 (406)
T 2gek_A 343 LIGILED 349 (406)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 9998864
No 261
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=39.53 E-value=52 Score=31.86 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=45.6
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 043479 20 DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76 (534)
Q Consensus 20 DLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP 76 (534)
.+|.+|. .....-.++++++++...++|+++=-+-.+.+.+.++++ ||+..+.=.
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGS 219 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGN 219 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECH
T ss_pred CEEEEeC-CCCcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEECh
Confidence 8999998 555556889999998865689888788888899988888 999998754
No 262
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=39.48 E-value=1.4e+02 Score=31.31 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCCC---C--C--HHHHHHHHHhhCCCCcEEEEec-CCCHHHHHHHH-HcCCcEEEeCC
Q 043479 6 PVEALATVRIQRDIDLVVTDLHMPE---M--N--GIELQKEINEEFTHLPVMVMSS-DDRESVIMKAL-ASGVAFYILKP 76 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~mPd---m--d--GleLL~~Lr~~~p~ipVIVLSs-~~d~~~~~~AL-~aGA~dyL~KP 76 (534)
..++++.+.+...+|.||+++..+. . + .-.+++.+++.....||++... ....+...+.+ +.|+--|
T Consensus 356 ~~~al~~~l~dp~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~~~~~~~~L~~~Gip~~---- 431 (457)
T 2csu_A 356 YYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIPTY---- 431 (457)
T ss_dssp HHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHHHHHTTTCCEE----
T ss_pred HHHHHHHHhcCCCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcchHHHHHHHHhCCCCcc----
Confidence 3566776655467899999875331 1 2 2346666665434478777433 22233344444 5676666
Q ss_pred CChHHHHHHHHHHHHHhhh
Q 043479 77 LNPDDLKNVWQYAMTYKKA 95 (534)
Q Consensus 77 ~s~eeL~~aI~~aL~~k~~ 95 (534)
-++++-.+++.++.+..+.
T Consensus 432 ~spe~Av~al~~l~~~~~~ 450 (457)
T 2csu_A 432 ERPEDVASAAYALVEQAKN 450 (457)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4667777777776655443
No 263
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=39.43 E-value=37 Score=33.37 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=38.7
Q ss_pred HHHHHHHhhCCCCcEEEEecCC------CHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHHHHH
Q 043479 35 ELQKEINEEFTHLPVMVMSSDD------RESVIMKALASGVAFYILKPLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 35 eLL~~Lr~~~p~ipVIVLSs~~------d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL~~ 92 (534)
++++.+++....+|+++|+=.. -+....+|.++|++++|.-.+.++|... +...++.
T Consensus 77 ~~~~~~~~~r~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~-~~~~~~~ 139 (252)
T 3tha_A 77 SVFELLARIKTKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDD-LIKECER 139 (252)
T ss_dssp HHHHHHHHCCCSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHH-HHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHHHHH
Confidence 3444555444458999987533 3456788999999999998888888544 4444433
No 264
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=39.33 E-value=41 Score=33.15 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=45.7
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe-------CCCChHHHHHHHHHHHHHhh
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL-------KPLNPDDLKNVWQYAMTYKK 94 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~-------KP~s~eeL~~aI~~aL~~k~ 94 (534)
+++++++++..+++|||....-.+.+.+.+++.+||+.+.. .|.-..++.+.+...+....
T Consensus 232 ~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~~~~g 299 (314)
T 2e6f_A 232 LANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKG 299 (314)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHHHHcC
Confidence 67888888776679999998888999999999999887632 56555666666665555443
No 265
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=39.32 E-value=1.3e+02 Score=26.26 Aligned_cols=74 Identities=12% Similarity=0.064 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHH
Q 043479 6 PVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNV 85 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~a 85 (534)
.++..+++. ..|++|+-... +.-+..+++.+.. .+|||+. .. ....+.+ .+..+++..|-+.++|.++
T Consensus 106 ~~~~~~~~~---~ad~~l~ps~~-e~~~~~~~Ea~a~---G~PvI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~ 173 (200)
T 2bfw_A 106 REFVRELYG---SVDFVIIPSYF-EPFGLVALEAMCL---GAIPIAS-AV---GGLRDII-TNETGILVKAGDPGELANA 173 (200)
T ss_dssp HHHHHHHHT---TCSEEEECCSC-CSSCHHHHHHHHT---TCEEEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHH
T ss_pred HHHHHHHHH---HCCEEEECCCC-CCccHHHHHHHHC---CCCEEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHH
Confidence 345555554 36888875433 3346677777654 4676543 22 2334445 6788999999999999999
Q ss_pred HHHHHH
Q 043479 86 WQYAMT 91 (534)
Q Consensus 86 I~~aL~ 91 (534)
|.+++.
T Consensus 174 i~~l~~ 179 (200)
T 2bfw_A 174 ILKALE 179 (200)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999886
No 266
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=38.98 E-value=74 Score=32.46 Aligned_cols=83 Identities=16% Similarity=0.048 Sum_probs=51.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCC---hH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLN---PD 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s---~e 80 (534)
+.++|+++++.-.++++..++--++. +.++.+++|++..+ +||+.-=...+.....++++.++.+++ .|+.. +.
T Consensus 211 ~~~~a~~~~~~l~~~~i~~iE~P~~~-~~~~~~~~l~~~~~-ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 288 (392)
T 2poz_A 211 TTDETIRFCRKIGELDICFVEEPCDP-FDNGALKVISEQIP-LPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAGGLM 288 (392)
T ss_dssp CHHHHHHHHHHHGGGCEEEEECCSCT-TCHHHHHHHHHHCS-SCEEECTTCCHHHHHHHHHTTTCCSEECCCTTTSSCHH
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCc-ccHHHHHHHHhhCC-CCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 46677776654345677777654443 34677788877653 786643333456677888888866555 78865 44
Q ss_pred HHHHHHHHH
Q 043479 81 DLKNVWQYA 89 (534)
Q Consensus 81 eL~~aI~~a 89 (534)
+.++++..+
T Consensus 289 ~~~~i~~~A 297 (392)
T 2poz_A 289 ETKKICAMA 297 (392)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 267
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=38.61 E-value=63 Score=30.36 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhcCCceEE---EEeCCC-CC-CCHHHHHHHHHhhCCCCcEE--EEecCCCHHHHHHHHHcCCcEEEeCCC
Q 043479 5 RPVEALATVRIQRDIDLV---VTDLHM-PE-MNGIELQKEINEEFTHLPVM--VMSSDDRESVIMKALASGVAFYILKPL 77 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLV---LLDi~m-Pd-mdGleLL~~Lr~~~p~ipVI--VLSs~~d~~~~~~AL~aGA~dyL~KP~ 77 (534)
+..+.++.+.+ ...|+| ++|-.. |. .-|.++++.|++.. +.++. +++. +....+..++++|++.+..-..
T Consensus 20 ~l~~~i~~~~~-~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~-~~~~~v~lmv~-d~~~~i~~~~~agad~v~vH~~ 96 (228)
T 1h1y_A 20 NLAAEADRMVR-LGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHT-KAYLDCHLMVT-NPSDYVEPLAKAGASGFTFHIE 96 (228)
T ss_dssp GHHHHHHHHHH-TTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTC-CSEEEEEEESS-CGGGGHHHHHHHTCSEEEEEGG
T ss_pred HHHHHHHHHHH-cCCCEEEEEEecCCcCcchhhCHHHHHHHHhhc-CCcEEEEEEec-CHHHHHHHHHHcCCCEEEECCC
Confidence 44566666655 445654 444322 22 33689999999865 34444 6664 3445688889999999866544
Q ss_pred ChHHH-HHHHHHH
Q 043479 78 NPDDL-KNVWQYA 89 (534)
Q Consensus 78 s~eeL-~~aI~~a 89 (534)
..++. ...++.+
T Consensus 97 ~~~~~~~~~~~~i 109 (228)
T 1h1y_A 97 VSRDNWQELIQSI 109 (228)
T ss_dssp GCTTTHHHHHHHH
T ss_pred CcccHHHHHHHHH
Confidence 33344 5555554
No 268
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=38.42 E-value=1.2e+02 Score=28.20 Aligned_cols=83 Identities=12% Similarity=0.100 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhcCCceEEEEeC---CC-CC-CCHHHHHHHHHhhCCCCcEEEEecCCCH-HHHHHHHHcCCcEEEeCCC-
Q 043479 5 RPVEALATVRIQRDIDLVVTDL---HM-PE-MNGIELQKEINEEFTHLPVMVMSSDDRE-SVIMKALASGVAFYILKPL- 77 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi---~m-Pd-mdGleLL~~Lr~~~p~ipVIVLSs~~d~-~~~~~AL~aGA~dyL~KP~- 77 (534)
+..+.++.+.+ ...|+|=+|+ .. +. ..+++++++|++.. ..|+.+..-..+. ..+..+.++|++.+..-..
T Consensus 24 ~~~~~i~~~~~-~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~-~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~ 101 (230)
T 1rpx_A 24 KLGEQVKAIEQ-AGCDWIHVDVMDGRFVPNITIGPLVVDSLRPIT-DLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQ 101 (230)
T ss_dssp GHHHHHHHHHH-TTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGC-CSCEEEEEESSSHHHHHHHHHHTTCSEEEEECST
T ss_pred HHHHHHHHHHH-CCCCEEEEeeccCCcccccccCHHHHHHHHhcc-CCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecC
Confidence 34556666655 4456555543 11 22 24689999998875 3455444333344 4677889999998875544
Q ss_pred -ChHHHHHHHHHH
Q 043479 78 -NPDDLKNVWQYA 89 (534)
Q Consensus 78 -s~eeL~~aI~~a 89 (534)
..+++...++.+
T Consensus 102 ~~~~~~~~~~~~~ 114 (230)
T 1rpx_A 102 SSTIHLHRTINQI 114 (230)
T ss_dssp TTCSCHHHHHHHH
T ss_pred ccchhHHHHHHHH
Confidence 334555555544
No 269
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=38.29 E-value=66 Score=31.72 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=43.1
Q ss_pred HhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 043479 14 RIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76 (534)
Q Consensus 14 ~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP 76 (534)
++ ..||+||+=---|...|-.-.+++... .++|.|+++...... ..++++..-.+||.-+
T Consensus 61 ~~-~~pDfvI~isPN~a~PGP~~ARE~l~~-~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk 120 (283)
T 1qv9_A 61 ED-FEPDFIVYGGPNPAAPGPSKAREMLAD-SEYPAVIIGDAPGLK-VKDEMEEQGLGYILVK 120 (283)
T ss_dssp HH-HCCSEEEEECSCTTSHHHHHHHHHHHT-SSSCEEEEEEGGGGG-GHHHHHHTTCEEEEET
T ss_pred hh-cCCCEEEEECCCCCCCCchHHHHHHHh-CCCCEEEEcCCcchh-hHHHHHhcCCcEEEEe
Confidence 44 679998886555567787777777643 469999999887766 4577777777776543
No 270
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=38.17 E-value=88 Score=23.99 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=34.6
Q ss_pred CccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHH
Q 043479 161 KVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASH 206 (534)
Q Consensus 161 rv~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSH 206 (534)
+-.|+.+--+.++++|+.+|..+ =+.|++.+...+-|..+++..
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~--W~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGN--WAAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCc--hHHHHhhcCCCCCCHHHHHHH
Confidence 45699999999999999998544 378999887666777776554
No 271
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=38.02 E-value=1.2e+02 Score=31.72 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=49.7
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCC-----------CCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCC
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHM-----------PEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGV 69 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~m-----------PdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA 69 (534)
+.+.++|..+++. ..|.|++...- .+...++++..+.+. ..++|||.-.+-.+...+.+++.+||
T Consensus 192 V~t~e~A~~a~~a--GAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGA 269 (400)
T 3ffs_A 192 VVTEEATKELIEN--GADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGA 269 (400)
T ss_dssp ECSHHHHHHHHHT--TCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHc--CCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCC
Confidence 4677787776654 58988873210 012346677777653 24689998888888999999999999
Q ss_pred cEEEeC
Q 043479 70 AFYILK 75 (534)
Q Consensus 70 ~dyL~K 75 (534)
+....=
T Consensus 270 d~V~vG 275 (400)
T 3ffs_A 270 SSVMIG 275 (400)
T ss_dssp SEEEEC
T ss_pred CEEEEC
Confidence 998653
No 272
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=38.01 E-value=61 Score=32.48 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=45.1
Q ss_pred CeecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 1 VTVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 1 vtass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
+++.+.+|+.+.++. ..|+|.+|-.-| -++-+.++...++ ..|..|+--+.+.+.+..+.|++.+-
T Consensus 203 VEv~tl~ea~eAl~a--GaD~I~LDn~~~----~~l~~av~~~~~~-v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 203 VEVTNLDELNQAIAA--KADIVMLDNFSG----EDIDIAVSIARGK-VALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEESSHHHHHHHHHT--TCSEEEEESCCH----HHHHHHHHHHTTT-CEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEeCCHHHHHHHHHc--CCCEEEEcCCCH----HHHHHHHHhhcCC-ceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 357888999888875 599999996333 2333333333333 34667887888888888889988764
No 273
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Probab=37.75 E-value=1e+02 Score=31.35 Aligned_cols=81 Identities=7% Similarity=0.016 Sum_probs=51.8
Q ss_pred CHHHHHHHHHhcCCc-eEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEE-EeCCCChHHH
Q 043479 5 RPVEALATVRIQRDI-DLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFY-ILKPLNPDDL 82 (534)
Q Consensus 5 s~~EALe~L~~~~~p-DLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dy-L~KP~s~eeL 82 (534)
+.++|++.++.-.++ ++..++--++. +.++.+++|++.. .+||+.-=...+.....++++.|+.++ ..|+...--|
T Consensus 196 ~~~~a~~~~~~l~~~~~i~~iEqP~~~-~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi 273 (382)
T 2gdq_A 196 DAAAAFKWERYFSEWTNIGWLEEPLPF-DQPQDYAMLRSRL-SVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGI 273 (382)
T ss_dssp CHHHHHTTHHHHTTCSCEEEEECCSCS-SCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHH
T ss_pred CHHHHHHHHHHHhhccCCeEEECCCCc-ccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCH
Confidence 467777766543456 78777754543 4477778887754 378765444446777888888886555 4788765445
Q ss_pred HHHHH
Q 043479 83 KNVWQ 87 (534)
Q Consensus 83 ~~aI~ 87 (534)
..+++
T Consensus 274 t~~~~ 278 (382)
T 2gdq_A 274 DEFRD 278 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 274
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=37.52 E-value=73 Score=32.15 Aligned_cols=63 Identities=8% Similarity=0.001 Sum_probs=47.0
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe------C-CCChHHHHHHHHHHHHHhhhc
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL------K-PLNPDDLKNVWQYAMTYKKAK 96 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~------K-P~s~eeL~~aI~~aL~~k~~~ 96 (534)
.++++++++..+.+|||.+.+-.+.+.+.+.+.+||+.+-. + |.-..+|.+-|...+..+...
T Consensus 265 ~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~~L~~~L~~~G~~ 334 (354)
T 3tjx_A 265 LANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRYQ 334 (354)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 45566777777789999999999999999999999988633 2 655667777777766655443
No 275
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=37.52 E-value=46 Score=32.80 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=43.9
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHH----HHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQK----EINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~----~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.+.+|+.+.++. ..|.|.+|-.- .+.++ .++..+|+++|. .|+--+.+.+.+..+.||+.+-.
T Consensus 188 ev~tlee~~~A~~a--GaD~I~ld~~~-----~~~l~~~v~~l~~~~~~~~i~-AsGGI~~~ni~~~~~aGaD~i~v 256 (273)
T 2b7n_A 188 ECESFEEAKNAMNA--GADIVMCDNLS-----VLETKEIAAYRDAHYPFVLLE-ASGNISLESINAYAKSGVDAISV 256 (273)
T ss_dssp EESSHHHHHHHHHH--TCSEEEEETCC-----HHHHHHHHHHHHHHCTTCEEE-EESSCCTTTHHHHHTTTCSEEEC
T ss_pred EcCCHHHHHHHHHc--CCCEEEECCCC-----HHHHHHHHHHhhccCCCcEEE-EECCCCHHHHHHHHHcCCcEEEE
Confidence 46678888777764 58999999622 33333 344456667765 45555778888889999976643
No 276
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=37.43 E-value=1.3e+02 Score=29.90 Aligned_cols=62 Identities=21% Similarity=0.081 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+.++.++.+.+ ..+|+|.+....| .++++.+++. .++|+... .+.+.+..+.+.|++.++.-
T Consensus 84 ~~~~~~~~~~~-~g~d~V~~~~g~p----~~~~~~l~~~--gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIE-AGIRVVETAGNDP----GEHIAEFRRH--GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHH-TTCCEEEEEESCC----HHHHHHHHHT--TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHh-cCCCEEEEcCCCc----HHHHHHHHHc--CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 34567777766 6799999887655 5788888764 47776543 35566778889999999873
No 277
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=37.21 E-value=39 Score=31.19 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043479 167 SLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212 (534)
Q Consensus 167 eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl 212 (534)
.|.++..+++..+.. ....+.|++.++ ++..+|+.|+.+...
T Consensus 198 ~L~~r~~~i~~~~~~-g~~~~eia~~l~---~s~~tv~~~l~~i~~ 239 (258)
T 3p7n_A 198 TLSPRQLEVTTLVAS-GLRNKEVAARLG---LSEKTVKMHRGLVME 239 (258)
T ss_dssp TSCHHHHHHHHHHHT-TCCHHHHHHHHT---CCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHc-CCCHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence 477888888888864 345899999999 999999999987654
No 278
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=37.12 E-value=1.3e+02 Score=29.46 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCceEEEEeCC------CCCC-CHHHHHHHHHhhCCCCcEEEEecCCCH------HHHHHHHHcCCcEEE
Q 043479 7 VEALATVRIQRDIDLVVTDLH------MPEM-NGIELQKEINEEFTHLPVMVMSSDDRE------SVIMKALASGVAFYI 73 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~------mPdm-dGleLL~~Lr~~~p~ipVIVLSs~~d~------~~~~~AL~aGA~dyL 73 (534)
.+|++.+......+++|+... -+.. -.+..+..+++.. ++|||+.+++... .....+...||++++
T Consensus 147 ~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~-~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~ 225 (262)
T 1zco_A 147 LYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELS-HLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIM 225 (262)
T ss_dssp HHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB-SSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhh-CCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEE
Confidence 345566665445799998821 1111 1223445555543 4899899888643 345668889999875
Q ss_pred -eCC-------------CChHHHHHHHHHHH
Q 043479 74 -LKP-------------LNPDDLKNVWQYAM 90 (534)
Q Consensus 74 -~KP-------------~s~eeL~~aI~~aL 90 (534)
.|- +++++|...++.+.
T Consensus 226 iE~H~~~d~al~D~~~sl~p~~~~~l~~~i~ 256 (262)
T 1zco_A 226 VEVHPEPEKALSDSQQQLTFDDFLQLLKELE 256 (262)
T ss_dssp EEBCSSGGGCSSCTTTCBCHHHHHHHHHHHH
T ss_pred EEecCCccccCChhhcCCCHHHHHHHHHHHH
Confidence 443 45667766666553
No 279
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=36.97 E-value=2.4e+02 Score=26.74 Aligned_cols=63 Identities=8% Similarity=0.079 Sum_probs=42.8
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHH
Q 043479 17 RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLK 83 (534)
Q Consensus 17 ~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~ 83 (534)
..+++|=+. +...++.+.++++++.++++-+-.=+ .-+.+.+..|+++||+..+. |-...++.
T Consensus 41 gGv~~iel~--~k~~~~~~~i~~l~~~~~~l~vgaGt-vl~~d~~~~A~~aGAd~v~~-p~~d~~v~ 103 (224)
T 1vhc_A 41 NGLSVAEIT--FRSEAAADAIRLLRANRPDFLIAAGT-VLTAEQVVLAKSSGADFVVT-PGLNPKIV 103 (224)
T ss_dssp TTCCEEEEE--TTSTTHHHHHHHHHHHCTTCEEEEES-CCSHHHHHHHHHHTCSEEEC-SSCCHHHH
T ss_pred cCCCEEEEe--ccCchHHHHHHHHHHhCcCcEEeeCc-EeeHHHHHHHHHCCCCEEEE-CCCCHHHH
Confidence 457776665 44567899999999988764433323 33678888999999997765 44334433
No 280
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=36.63 E-value=2e+02 Score=24.43 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=39.8
Q ss_pred CceEEEEeCCCCCCC------------------HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 043479 18 DIDLVVTDLHMPEMN------------------GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76 (534)
Q Consensus 18 ~pDLVLLDi~mPdmd------------------GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP 76 (534)
.+.+|++|++-.=.+ ..++++.+++. .++++++|+.........+-..|...|+...
T Consensus 8 ~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~ 82 (162)
T 2p9j_A 8 KLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKM--GITLAVISGRDSAPLITRLKELGVEEIYTGS 82 (162)
T ss_dssp HCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTT--TCEEEEEESCCCHHHHHHHHHTTCCEEEECC
T ss_pred ceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHC--CCEEEEEeCCCcHHHHHHHHHcCCHhhccCC
Confidence 378999998632111 23678887754 4789999998877666666678988888543
No 281
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=36.34 E-value=1.1e+02 Score=30.63 Aligned_cols=64 Identities=11% Similarity=0.011 Sum_probs=45.4
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEE
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFY 72 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dy 72 (534)
.+.+.+|+.+.++. .+|+|.+|- ++--++-+.++...++ ..|..|+.-+.+.+.+..+.|++.+
T Consensus 215 Evdtlde~~eAl~a--GaD~I~LDn----~~~~~l~~av~~i~~~-v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 215 EVETLDQLRTALAH--GARSVLLDN----FTLDMMRDAVRVTEGR-AVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EESSHHHHHHHHHT--TCEEEEEES----CCHHHHHHHHHHHTTS-EEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EeCCHHHHHHHHHc--CCCEEEECC----CCHHHHHHHHHHhCCC-CeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 57788888888874 589999996 3334444444444444 3466788788888888889999766
No 282
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=36.19 E-value=65 Score=32.06 Aligned_cols=68 Identities=10% Similarity=0.034 Sum_probs=46.6
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
.+.+.+|+.+.++. ..|+|++|-.-| .+-.+.++.++...+.+ .|..|+--+.+.+.+..+.|++.+.
T Consensus 200 ev~t~eea~eal~a--GaD~I~LDn~~~-~~~~~~v~~l~~~~~~v-~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 200 EVDSLEQLDAVLPE--KPELILLDNFAV-WQTQTAVQRRDSRAPTV-MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp EESSHHHHHHHGGG--CCSEEEEETCCH-HHHHHHHHHHHHHCTTC-EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred EeCCHHHHHHHHHc--CCCEEEECCCCH-HHHHHHHHHhhccCCCe-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 46678888888874 589999997433 22223455555545554 4566777788888888899988775
No 283
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=36.18 E-value=96 Score=31.41 Aligned_cols=66 Identities=9% Similarity=0.099 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCC--C----------CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPE--M----------NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPd--m----------dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+..+.+.+ ...|.|.+.-.... . -.+++++++++..+++|||+--.-.+.+.+.++++ ||+.+..
T Consensus 147 ~~~a~~l~~-aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~i 224 (350)
T 3b0p_A 147 AQSVEAMAE-AGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVML 224 (350)
T ss_dssp HHHHHHHHH-TTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEE
T ss_pred HHHHHHHHH-cCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 344455555 56888777643211 1 13788999998877799998888788888888887 9888754
No 284
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=36.03 E-value=32 Score=31.49 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
++.|+.+.++ ...|+|-+... ...|.+.++++++..+++||+...+-. .+.+.+++++||+.+..
T Consensus 113 t~~e~~~a~~--~Gad~vk~~~~--~~~g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 113 TPTELVKAMK--LGHTILKLFPG--EVVGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp SHHHHHHHHH--TTCCEEEETTH--HHHHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHH--cCCCEEEEcCc--cccCHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 5666666654 35787765321 123778888888877678888776664 56778899999998854
No 285
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=36.01 E-value=96 Score=29.55 Aligned_cols=72 Identities=14% Similarity=0.273 Sum_probs=48.0
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe-----CCCChHHHHHH
Q 043479 18 DIDLVVTDLHMPEMNG-------IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL-----KPLNPDDLKNV 85 (534)
Q Consensus 18 ~pDLVLLDi~mPdmdG-------leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~-----KP~s~eeL~~a 85 (534)
.+|.|++...-|+..| ++-++++|+..++++|. +.+--+.+.+..+.++||+.++. +.-++.+-.+.
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~-VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~ 212 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIE-VDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINL 212 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEE-EESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHH
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEE-EeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHH
Confidence 3788888766676544 56677888777666654 55555678888999999999864 33355554444
Q ss_pred HHHHH
Q 043479 86 WQYAM 90 (534)
Q Consensus 86 I~~aL 90 (534)
++..+
T Consensus 213 l~~~~ 217 (228)
T 3ovp_A 213 LRNVC 217 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 286
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=35.79 E-value=1.1e+02 Score=31.48 Aligned_cols=82 Identities=9% Similarity=-0.078 Sum_probs=51.0
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++.+++-=++..+.++.+++|++..+ +||+.-=...+.....++++.|+.+++ .|+...--|.
T Consensus 211 ~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit 289 (392)
T 3ddm_A 211 DLPRARQMAQRLGPAQLDWLEEPLRADRPAAEWAELAQAAP-MPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFS 289 (392)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSCTTSCHHHHHHHHHHCS-SCEEECTTCCSHHHHHHHHHHTCEEEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEECCCCccchHHHHHHHHHhcC-CCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHH
Confidence 46677766554234666666644443332777888887654 787654444566777888888887776 7776544444
Q ss_pred HHHH
Q 043479 84 NVWQ 87 (534)
Q Consensus 84 ~aI~ 87 (534)
.+++
T Consensus 290 ~~~~ 293 (392)
T 3ddm_A 290 GCLP 293 (392)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 287
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=35.65 E-value=7.8 Score=35.69 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q 043479 166 DSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLK 215 (534)
Q Consensus 166 ~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lk 215 (534)
..|+++..+++...-++....++|++.|+ +|..+|+.++.+-+..||
T Consensus 197 ~~L~~~~r~vl~l~~~~g~s~~EIA~~lg---is~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 197 EELDERERLIVYLRYYKDQTQSEVASRLG---ISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp --------------------------------------------------
T ss_pred HhCCHHHHHHHHHHHhcCCCHHHHHHHHC---cCHHHHHHHHHHHHHHcC
Confidence 34888888888875445555899999999 899999999988776543
No 288
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=35.63 E-value=2.4e+02 Score=26.42 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=41.5
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCC
Q 043479 17 RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLN 78 (534)
Q Consensus 17 ~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s 78 (534)
..+++|=+. +...++.+.++.+++.++++.+- .-.--+.+.+..|+++||+..+.--.+
T Consensus 40 gGv~~iel~--~k~~~~~~~i~~l~~~~~~~~vg-agtvi~~d~~~~A~~aGAd~v~~p~~d 98 (214)
T 1wbh_A 40 GGVRVLNVT--LRTECAVDAIRAIAKEVPEAIVG-AGTVLNPQQLAEVTEAGAQFAISPGLT 98 (214)
T ss_dssp TTCCEEEEE--SCSTTHHHHHHHHHHHCTTSEEE-EESCCSHHHHHHHHHHTCSCEEESSCC
T ss_pred cCCCEEEEe--CCChhHHHHHHHHHHHCcCCEEe-eCEEEEHHHHHHHHHcCCCEEEcCCCC
Confidence 457776665 44567899999999888764433 333556688889999999977764333
No 289
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=35.47 E-value=37 Score=34.69 Aligned_cols=60 Identities=8% Similarity=0.097 Sum_probs=44.2
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEe-------CCCChHHHHHHHHHHHHHh
Q 043479 34 IELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYIL-------KPLNPDDLKNVWQYAMTYK 93 (534)
Q Consensus 34 leLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~-------KP~s~eeL~~aI~~aL~~k 93 (534)
+++++++++..+ ++|||...+-.+.+.+.+++.+||+.+.. -|.-..++.+.+.+.+...
T Consensus 262 ~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~~i~~~L~~~l~~~ 329 (345)
T 3oix_A 262 LANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIMTEK 329 (345)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHHHHHHHHHHHHHHc
Confidence 678888887764 69999999999999999999999998743 2433455555555555443
No 290
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=35.35 E-value=63 Score=24.14 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=36.3
Q ss_pred cCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043479 163 AWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKY 210 (534)
Q Consensus 163 ~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKy 210 (534)
.|+.+=..+++++++.+|... =++|++.|. .+-|...++.|..+|
T Consensus 11 ~WT~eED~~L~~~v~~~G~~~--W~~IA~~~~-~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 11 NWGADEELLLIDACETLGLGN--WADIADYVG-NARTKEECRDHYLKT 55 (58)
T ss_dssp CCCHHHHHHHHHHHHHTTTTC--HHHHHHHHC-SSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCC--HHHHHHHHC-CCCCHHHHHHHHHHH
Confidence 599999999999999998544 388998874 157888998887654
No 291
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=35.19 E-value=24 Score=34.21 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCC--CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPE--MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPd--mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.++++.+.+ ...|+|.+-....- .+-+++++++|+ .++|||+++...+. +..|++++|.-.+..
T Consensus 23 ~~~~~~l~~-~GaD~IelG~S~g~t~~~~~~~v~~ir~--~~~Pivl~~y~~n~------i~~gvDg~iipdLp~ 88 (234)
T 2f6u_A 23 DEIIKAVAD-SGTDAVMISGTQNVTYEKARTLIEKVSQ--YGLPIVVEPSDPSN------VVYDVDYLFVPTVLN 88 (234)
T ss_dssp HHHHHHHHT-TTCSEEEECCCTTCCHHHHHHHHHHHTT--SCCCEEECCSSCCC------CCCCSSEEEEEEETT
T ss_pred HHHHHHHHH-cCCCEEEECCCCCCCHHHHHHHHHHhcC--CCCCEEEecCCcch------hhcCCCEEEEcccCC
Confidence 456677765 56899999874221 224667777776 57999999987422 278999998764443
No 292
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=34.89 E-value=31 Score=33.40 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=53.1
Q ss_pred CHHHHHHHHHhcCCceEEEEeC---CC-CC-CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 5 RPVEALATVRIQRDIDLVVTDL---HM-PE-MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi---~m-Pd-mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
+..+.++.+.+ ...|.+=+|+ +. |. .-|.++++.||+..+. .+-+|.. ....++..+.++||+.+..-....
T Consensus 27 ~l~~~i~~~~~-~gad~lhvDvmDG~fvpn~t~G~~~v~~lr~~~~~-DvhLMv~-~p~~~i~~~~~aGAd~itvH~ea~ 103 (237)
T 3cu2_A 27 QLNEEVTTLLE-NQINVLHFDIADGQFSSLFTVGAIGIKYFPTHCFK-DVHLMVR-NQLEVAKAVVANGANLVTLQLEQY 103 (237)
T ss_dssp GHHHHHHHHHH-TTCCEEEEEEEBSSSSSCBCBCTHHHHTSCTTSEE-EEEEECS-CHHHHHHHHHHTTCSEEEEETTCT
T ss_pred cHHHHHHHHHH-cCCCEEEEEEecCccccchhhhHHHHHHHhhhCCC-CeEEEEE-CHHHHHHHHHHcCCCEEEEecCCc
Confidence 45667777765 4456555554 22 32 2366888888876543 5555544 335667889999999977766655
Q ss_pred HHHHHHHHHHH
Q 043479 80 DDLKNVWQYAM 90 (534)
Q Consensus 80 eeL~~aI~~aL 90 (534)
+.+.+.++.+.
T Consensus 104 ~~~~~~i~~i~ 114 (237)
T 3cu2_A 104 HDFALTIEWLA 114 (237)
T ss_dssp TSHHHHHHHHT
T ss_pred ccHHHHHHHHH
Confidence 66666666653
No 293
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=34.66 E-value=24 Score=32.58 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=35.6
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHHhhC----CCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 18 DIDLVVTDLHMPEMNG-------IELQKEINEEF----THLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 18 ~pDLVLLDi~mPdmdG-------leLL~~Lr~~~----p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
..|.|+++...|+.+| ++.++.+++.. .++||++ ++--+.+.+.++.++|+++++.
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v-~GGI~~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEV-DGGVDNKTIRACYEAGANVFVA 197 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE-ESSCCTTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEE-ECcCCHHHHHHHHHcCCCEEEE
Confidence 3788888776664333 34456666533 2567655 4444466677788889999864
No 294
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=34.16 E-value=96 Score=29.68 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=49.9
Q ss_pred CHHHHHHHHHhcCCceEE---EEeCCC-CC-CCHHHHHHHHHhhCCCCcE--EEEecCCCHHHHHHHHHcCCcEEEeCCC
Q 043479 5 RPVEALATVRIQRDIDLV---VTDLHM-PE-MNGIELQKEINEEFTHLPV--MVMSSDDRESVIMKALASGVAFYILKPL 77 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLV---LLDi~m-Pd-mdGleLL~~Lr~~~p~ipV--IVLSs~~d~~~~~~AL~aGA~dyL~KP~ 77 (534)
+..++++.+ + ...|.+ ++|-+. |. .-|..+++.||+.. +.|+ -+++... ..++..+.++||+.+..-..
T Consensus 14 ~l~~~i~~~-~-~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~-~~~~dvhLmv~dp-~~~i~~~~~aGAd~itvh~E 89 (231)
T 3ctl_A 14 KFKEQIEFI-D-SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLA-TKPLDCHLMVTRP-QDYIAQLARAGADFITLHPE 89 (231)
T ss_dssp GHHHHHHHH-H-TTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTC-CSCEEEEEESSCG-GGTHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHH-H-cCCCEEEEEEEeCccCccchhcHHHHHHHHhcc-CCcEEEEEEecCH-HHHHHHHHHcCCCEEEECcc
Confidence 566778888 4 334443 445432 33 34889999999864 3444 4455533 33567889999998876654
Q ss_pred C-hHHHHHHHHHHH
Q 043479 78 N-PDDLKNVWQYAM 90 (534)
Q Consensus 78 s-~eeL~~aI~~aL 90 (534)
. ...+.+.++.+.
T Consensus 90 a~~~~~~~~i~~i~ 103 (231)
T 3ctl_A 90 TINGQAFRLIDEIR 103 (231)
T ss_dssp GCTTTHHHHHHHHH
T ss_pred cCCccHHHHHHHHH
Confidence 4 334555555554
No 295
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=34.03 E-value=1e+02 Score=22.88 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=35.8
Q ss_pred CCccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043479 160 PKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKY 210 (534)
Q Consensus 160 prv~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKy 210 (534)
.+-.|+.+=-..+++++..+|..+ =+.|++.| ++-|...++.+..+|
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQD--WKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTC--HHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHc--cCCCHHHHHHHHHHH
Confidence 345799999999999999998433 47888887 467888887775543
No 296
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=33.47 E-value=1.3e+02 Score=30.95 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=46.8
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCC-----------CCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCC
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHM-----------PEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGV 69 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~m-----------PdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA 69 (534)
+.+.++|....+ ..+|.|++...- .+...++.+..+++. ..++|||...+-.+...+.+++.+||
T Consensus 202 v~~~~~a~~a~~--~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GA 279 (404)
T 1eep_A 202 IVTKEAALDLIS--VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGA 279 (404)
T ss_dssp ECSHHHHHHHHT--TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHh--cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCC
Confidence 345666655543 458988882210 022245666666653 23689988888888899999999999
Q ss_pred cEEEe
Q 043479 70 AFYIL 74 (534)
Q Consensus 70 ~dyL~ 74 (534)
+.+..
T Consensus 280 d~V~i 284 (404)
T 1eep_A 280 DSVMI 284 (404)
T ss_dssp SEEEE
T ss_pred CHHhh
Confidence 99875
No 297
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=32.95 E-value=78 Score=27.03 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=34.5
Q ss_pred ccCCchhhHHHHHHHHHhccCCCcHHHHHHHc--CCCCCCHHHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLEKAVPKKILEFM--NVPGLTRENVASHLQKYRI 212 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M--~V~GLT~~tVaSHLQKyRl 212 (534)
..|-...-.+.++.+..-| ...+++|++.+ + +|+..|..||.+...
T Consensus 8 ~~~md~~d~~IL~~L~~~g--~~s~~eLA~~l~~g---iS~~aVs~rL~~Le~ 55 (111)
T 3b73_A 8 GSWMTIWDDRILEIIHEEG--NGSPKELEDRDEIR---ISKSSVSRRLKKLAD 55 (111)
T ss_dssp CTTCCHHHHHHHHHHHHHS--CBCHHHHHTSTTCC---SCHHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHcC--CCCHHHHHHHHhcC---CCHHHHHHHHHHHHH
Confidence 4576666666666665555 67789999988 6 899999999887643
No 298
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=32.91 E-value=61 Score=31.82 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=42.1
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEe-------CCCChHHHHHHHHHHHHH
Q 043479 34 IELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYIL-------KPLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 34 leLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~-------KP~s~eeL~~aI~~aL~~ 92 (534)
+++++++++..+ ++|||....-.+.+.+.+++.+||+.+.. .|.-..++.+.+...+..
T Consensus 229 ~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~l~~~l~~ 295 (311)
T 1jub_A 229 LANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQ 295 (311)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHHHHHHHHHHHHHHHH
Confidence 677888887653 79999999999999999999999988743 343344444444444443
No 299
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=32.70 E-value=2.1e+02 Score=28.00 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=41.7
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe--CCCChHHHHHHHHHHH
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL--KPLNPDDLKNVWQYAM 90 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~--KP~s~eeL~~aI~~aL 90 (534)
++.++.+++.. ++||+.---.-++..+..+..+||+.+++ ..++.+++...+..+.
T Consensus 102 ~~~l~~ir~~v-~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~ 159 (272)
T 3qja_A 102 LDDLDAVRASV-SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE 159 (272)
T ss_dssp HHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH
Confidence 77888888764 58998665555666688999999999986 5566777777666654
No 300
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=32.65 E-value=1.3e+02 Score=29.90 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=33.8
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 34 IELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 34 leLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+++++++++..+ ++|||....-.+.+.+.+++.+||+.+..
T Consensus 276 ~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~i 317 (336)
T 1f76_A 276 TEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQI 317 (336)
T ss_dssp HHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEe
Confidence 467778877543 69999999999999999999999988743
No 301
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=32.49 E-value=74 Score=32.54 Aligned_cols=83 Identities=11% Similarity=0.041 Sum_probs=50.7
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCC---hH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLN---PD 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s---~e 80 (534)
+.++|++.++.-.++++.+++--++. +-++.+++|++.. .+||+.-=...+.....++++.|+.+++ .|+.. +.
T Consensus 206 ~~~~a~~~~~~l~~~~i~~iEqP~~~-~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 283 (391)
T 2qgy_A 206 DLDQTKSFLKEVSSFNPYWIEEPVDG-ENISLLTEIKNTF-NMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGGLI 283 (391)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECSSCT-TCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSCHH
T ss_pred CHHHHHHHHHHHHhcCCCeEeCCCCh-hhHHHHHHHHhhC-CCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCCHH
Confidence 45677666654234555556543443 4467778887765 3787654444567788888988866655 78765 44
Q ss_pred HHHHHHHHH
Q 043479 81 DLKNVWQYA 89 (534)
Q Consensus 81 eL~~aI~~a 89 (534)
+.++++..+
T Consensus 284 ~~~~i~~~A 292 (391)
T 2qgy_A 284 DIIEISNEA 292 (391)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 302
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=32.42 E-value=2.2e+02 Score=30.08 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=33.7
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 34 IELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 34 leLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
+++++++++... .+|||....-.+.+.+.+++.+||+.+-
T Consensus 360 l~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vq 400 (443)
T 1tv5_A 360 TKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQ 400 (443)
T ss_dssp HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 477888887653 7999999999999999999999987763
No 303
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Probab=32.41 E-value=1.1e+02 Score=31.48 Aligned_cols=82 Identities=7% Similarity=0.036 Sum_probs=51.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++.+++--++. +.++.+++|++..+ +||+.-=...+.....++++.|+.+++ .|+...--|.
T Consensus 218 ~~~~A~~~~~~L~~~~i~~iEeP~~~-~d~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit 295 (394)
T 3mkc_A 218 DWYEVARLLNSIEDLELYFAEATLQH-DDLSGHAKLVENTR-SRICGAEMSTTRFEAEEWITKGKVHLLQSDYNRCGGLT 295 (394)
T ss_dssp CHHHHHHHHHHTGGGCCSEEESCSCT-TCHHHHHHHHHHCS-SCBEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHhhhcCCeEEECCCCc-hhHHHHHHHHhhCC-CCEEeCCCCCCHHHHHHHHHcCCCCeEecCccccCCHH
Confidence 56777777765344666666654443 33677788877654 786543333455677788888866665 7877654555
Q ss_pred HHHHH
Q 043479 84 NVWQY 88 (534)
Q Consensus 84 ~aI~~ 88 (534)
.+++-
T Consensus 296 ~~~~i 300 (394)
T 3mkc_A 296 ELRRI 300 (394)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 304
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=32.38 E-value=1.1e+02 Score=28.01 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=48.9
Q ss_pred CHHHHHHHHHhcCCce---EEEEeCCCC-C-CCHHHHHHHHHhhCCCCcEEEEecCCC-HHHHHHHHHcCCcEEEeCCCC
Q 043479 5 RPVEALATVRIQRDID---LVVTDLHMP-E-MNGIELQKEINEEFTHLPVMVMSSDDR-ESVIMKALASGVAFYILKPLN 78 (534)
Q Consensus 5 s~~EALe~L~~~~~pD---LVLLDi~mP-d-mdGleLL~~Lr~~~p~ipVIVLSs~~d-~~~~~~AL~aGA~dyL~KP~s 78 (534)
+..++++.+.+ ...| ++++|-..+ . ..|.+++++|++.. ..|+.+-.-..+ ...+..+.++|++.+..-...
T Consensus 17 ~~~~~~~~~~~-~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~-~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~ 94 (220)
T 2fli_A 17 NFASELARIEE-TDAEYVHIDIMDGQFVPNISFGADVVASMRKHS-KLVFDCHLMVVDPERYVEAFAQAGADIMTIHTES 94 (220)
T ss_dssp GHHHHHHHHHH-TTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTC-CSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGG
T ss_pred HHHHHHHHHHH-cCCCEEEEEeecCCCCCccccCHHHHHHHHHhC-CCCEEEEEeecCHHHHHHHHHHcCCCEEEEccCc
Confidence 44566666665 3344 556664422 2 44689999999765 356555443333 335688899999998764332
Q ss_pred hHHHHHHHHHH
Q 043479 79 PDDLKNVWQYA 89 (534)
Q Consensus 79 ~eeL~~aI~~a 89 (534)
.+.+...++.+
T Consensus 95 ~~~~~~~~~~~ 105 (220)
T 2fli_A 95 TRHIHGALQKI 105 (220)
T ss_dssp CSCHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 24444444444
No 305
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=32.22 E-value=1.3e+02 Score=28.28 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 33 GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 33 GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
.++.++++++.. ++||++-.+-...+.+.+++++||++++.=
T Consensus 179 ~~~~i~~l~~~~-~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 179 AYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhc-CCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 356778887765 589888777777688888889999999864
No 306
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=32.08 E-value=38 Score=32.95 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCCC---CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChH
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPEM---NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPD 80 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPdm---dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~e 80 (534)
.++++.+.+ ...|+|.+-.. .++ +.+++++++|+ .++|||+++...+. +..|+++||.-.+..+
T Consensus 23 ~~~~~~l~~-~GaD~ielG~S-~Gvt~~~~~~~v~~ir~--~~~Pivlm~y~~n~------i~~G~dg~iiPdLp~e 89 (240)
T 1viz_A 23 DEQLEILCE-SGTDAVIIGGS-DGVTEDNVLRMMSKVRR--FLVPCVLEVSAIEA------IVPGFDLYFIPSVLNS 89 (240)
T ss_dssp HHHHHHHHT-SCCSEEEECC-----CHHHHHHHHHHHTT--SSSCEEEECSCGGG------CCSCCSEEEEEEETTB
T ss_pred HHHHHHHHH-cCCCEEEECCC-CCCCHHHHHHHHHHhhC--cCCCEEEecCcccc------ccCCCCEEEEcccCcc
Confidence 456777766 56899999763 222 25677778776 57999999887422 2789999997654443
No 307
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}
Probab=32.02 E-value=80 Score=32.34 Aligned_cols=83 Identities=10% Similarity=0.034 Sum_probs=48.0
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|+++++.-.++++..++--++. +-++.+++|++.. .+||+.-=...+.....++++.++.+++ .|+...--|.
T Consensus 227 ~~~~a~~~~~~l~~~~i~~iE~P~~~-~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 304 (407)
T 2o56_A 227 DTTSAIQFGRMIEELGIFYYEEPVMP-LNPAQMKQVADKV-NIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGIT 304 (407)
T ss_dssp CHHHHHHHHHHHGGGCCSCEECSSCS-SSHHHHHHHHHHC-CSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEeCCCCh-hhHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 45566665543233555555533332 3467777777665 3776643333456677888888866655 7887655555
Q ss_pred HHHHHH
Q 043479 84 NVWQYA 89 (534)
Q Consensus 84 ~aI~~a 89 (534)
++++-+
T Consensus 305 e~~~i~ 310 (407)
T 2o56_A 305 EVKKIC 310 (407)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 308
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=31.98 E-value=65 Score=30.34 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=29.3
Q ss_pred CCceEEEEeCCC-----CCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHH
Q 043479 17 RDIDLVVTDLHM-----PEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMK 63 (534)
Q Consensus 17 ~~pDLVLLDi~m-----PdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~ 63 (534)
..+||||+|--. .-.+--++++.|..+.+..- ||+|+...+..+.+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~-vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQT-VIITGRGCHRDILD 169 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCE-EEEECSSCCHHHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCE-EEEECCCCcHHHHH
Confidence 579999999532 22455567888876555554 55677665554443
No 309
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=31.87 E-value=1.5e+02 Score=30.22 Aligned_cols=70 Identities=23% Similarity=0.305 Sum_probs=50.9
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCC----C-CCCCHHHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLH----M-PEMNGIELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~----m-PdmdGleLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
.+.++|....+ ..+|.|.+.-+ + .+...++++.++++..+ .+|||.-.+-.+...+.+++.+||+.+..=
T Consensus 238 ~~~e~a~~a~~--~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 238 QHPEDADMAIK--RGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALG 313 (368)
T ss_dssp CSHHHHHHHHH--TTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHH--cCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 35666666554 45888887432 1 12346788888876543 699999999999999999999999998753
No 310
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=31.67 E-value=40 Score=31.43 Aligned_cols=85 Identities=11% Similarity=0.117 Sum_probs=51.8
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCCC--CCCHHHHHHHHHhhCCCCcEEEEe--cCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHMP--EMNGIELQKEINEEFTHLPVMVMS--SDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~mP--dmdGleLL~~Lr~~~p~ipVIVLS--s~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.+++++.+++. ...+..+|+.++ -.-|.++++.|++.+|+.+|++=. ..........+.++||+.+-.-+..-
T Consensus 13 ~~~~~~~~~~~~~-~~~v~~~kv~~~~f~~~G~~~i~~l~~~~p~~~v~lD~kl~dip~t~~~~~~~~Gad~itvh~~~g 91 (216)
T 1q6o_A 13 QTMDSAYETTRLI-AEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCAD 91 (216)
T ss_dssp SSHHHHHHHHHHH-GGGCSEEEECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CCHHHHHHHHHHh-cccCCEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEEEecccHHHHHHHHHhCCCCEEEEeccCC
Confidence 4677888888652 222233477554 234678899999887767765421 11122345567899999888877654
Q ss_pred HH-HHHHHHHH
Q 043479 80 DD-LKNVWQYA 89 (534)
Q Consensus 80 ee-L~~aI~~a 89 (534)
.+ +..+++.+
T Consensus 92 ~~~l~~~~~~~ 102 (216)
T 1q6o_A 92 INTAKGALDVA 102 (216)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44 55555443
No 311
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=31.62 E-value=2.3e+02 Score=27.60 Aligned_cols=89 Identities=10% Similarity=-0.034 Sum_probs=54.7
Q ss_pred CHHHHHHHHHhc---CCceEEEEeC-CC-CCCCHHHHHHHHHhh-CCCCcEEEEecCCC----HHHHHHHHHcCCcEEEe
Q 043479 5 RPVEALATVRIQ---RDIDLVVTDL-HM-PEMNGIELQKEINEE-FTHLPVMVMSSDDR----ESVIMKALASGVAFYIL 74 (534)
Q Consensus 5 s~~EALe~L~~~---~~pDLVLLDi-~m-PdmdGleLL~~Lr~~-~p~ipVIVLSs~~d----~~~~~~AL~aGA~dyL~ 74 (534)
+..+.++.+... ...-|||+|- ++ ...+..+.+...-+. .+++.+|+++...+ ...+..++..-+.-+-.
T Consensus 60 ~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~ 139 (343)
T 1jr3_D 60 DWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (343)
T ss_dssp CHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEE
T ss_pred CHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEe
Confidence 344555444331 3457888875 44 444566644444443 33556666665433 23556677767777888
Q ss_pred CCCChHHHHHHHHHHHHHh
Q 043479 75 KPLNPDDLKNVWQYAMTYK 93 (534)
Q Consensus 75 KP~s~eeL~~aI~~aL~~k 93 (534)
+|.+.+++...|+..+...
T Consensus 140 ~~l~~~~l~~~l~~~~~~~ 158 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQL 158 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHT
T ss_pred eCCCHHHHHHHHHHHHHHc
Confidence 9999999999998887654
No 312
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=31.60 E-value=1.3e+02 Score=23.10 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=39.1
Q ss_pred CCCCccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 043479 158 KKPKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216 (534)
Q Consensus 158 kKprv~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr 216 (534)
.+.+-.|+.+=-..++++++.+|..+ =+.|++.|...+-|...++.+ |+.+|+.
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~~~~~Rt~~qcr~R---w~~~l~p 60 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGN--WSKILLHYKFNNRTSVMLKDR---WRTMKKL 60 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSC--HHHHHHHSCCSSCCHHHHHHH---HHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCc--HHHHHHHcCcCCCCHHHHHHH---HHHHcCC
Confidence 34456799999999999999998544 388999986445677766655 5555544
No 313
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=31.55 E-value=1.9e+02 Score=27.81 Aligned_cols=69 Identities=7% Similarity=0.049 Sum_probs=49.5
Q ss_pred HHHHHHHHHhc--CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 043479 6 PVEALATVRIQ--RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76 (534)
Q Consensus 6 ~~EALe~L~~~--~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP 76 (534)
.+++..+.... ...++|-+|. .......++++++++...++||++=-+-.+.+.+.+++ .||+..+.-.
T Consensus 139 ~e~~~~~a~~a~~~g~~~VYld~-sG~~~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGS 209 (228)
T 3vzx_A 139 MDDIVAYARVSELLQLPIFYLEY-SGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGN 209 (228)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEC-TTSCCCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECT
T ss_pred HHHHHHHHHHHHHcCCCEEEecC-CCCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEECh
Confidence 34544444321 3478999988 33223588999999876468988877778888888877 7999998865
No 314
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=31.48 E-value=81 Score=32.30 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCcEEEeCCCChHHHHHHHHHHHHH
Q 043479 58 ESVIMKALASGVAFYILKPLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 58 ~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL~~ 92 (534)
.+.+.+|+++|..-++.||++.+|..+.++.+.+.
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~ 118 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQ 118 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHc
Confidence 46788999999999999999999998888766544
No 315
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=31.44 E-value=1.2e+02 Score=29.76 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=36.3
Q ss_pred hCCCCcEEEEecCCC--HHHHHHHHHcCCcEEEeCCC--ChHHHHHHHHHHHH
Q 043479 43 EFTHLPVMVMSSDDR--ESVIMKALASGVAFYILKPL--NPDDLKNVWQYAMT 91 (534)
Q Consensus 43 ~~p~ipVIVLSs~~d--~~~~~~AL~aGA~dyL~KP~--s~eeL~~aI~~aL~ 91 (534)
..+++-+|+++.... .+.+..|+++|..-++.||+ +.++..+.++.+-+
T Consensus 69 ~~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 121 (312)
T 3o9z_A 69 RGEGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEAR 121 (312)
T ss_dssp TTCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHH
T ss_pred cCCCCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 346677777766554 45678899999999999996 56788777776643
No 316
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=31.41 E-value=79 Score=31.93 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHhhCCCCcEEEEe--cCCCHHHHHHHHHcCCcEEEeCCCCh---HHHHHHHHHHH
Q 043479 31 MNGIELQKEINEEFTHLPVMVMS--SDDRESVIMKALASGVAFYILKPLNP---DDLKNVWQYAM 90 (534)
Q Consensus 31 mdGleLL~~Lr~~~p~ipVIVLS--s~~d~~~~~~AL~aGA~dyL~KP~s~---eeL~~aI~~aL 90 (534)
.+.+++++.+++..+++++++++ .......+.++.++|++.+.. +... +++...++.+.
T Consensus 67 ~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I-~~~~s~~~~~~~~i~~ak 130 (345)
T 1nvm_A 67 HTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRV-ATHCTEADVSKQHIEYAR 130 (345)
T ss_dssp SCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEEE-EEETTCGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCEEEE-EEeccHHHHHHHHHHHHH
Confidence 57889999998877889998885 334567788899999988754 2322 45555655544
No 317
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=31.15 E-value=1.3e+02 Score=29.87 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 32 NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 32 dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
..++.+.++++..+++|||...+-.+...+.+++.+||+.+..
T Consensus 242 ~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~i 284 (332)
T 1vcf_A 242 PTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAV 284 (332)
T ss_dssp BHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhh
Confidence 4567778887766579999999999999999999999998753
No 318
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=31.13 E-value=1.1e+02 Score=30.58 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=39.8
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHH
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQY 88 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~ 88 (534)
.+.++.+++..++.+|++-+. +.+.+.+++++|++.+...++++++|..+++.
T Consensus 196 ~~ai~~~r~~~~~~kI~vev~--tlee~~eA~~aGaD~I~ld~~~~e~l~~~v~~ 248 (296)
T 1qap_A 196 RQAVEKAFWLHPDVPVEVEVE--NLDELDDALKAGADIIMLDNFNTDQMREAVKR 248 (296)
T ss_dssp HHHHHHHHHHSTTSCEEEEES--SHHHHHHHHHTTCSEEEESSCCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCcEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 345677777777666665443 34667888999999999999999999887763
No 319
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=30.98 E-value=1.6e+02 Score=30.03 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCC----C-CCCHHHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHM----P-EMNGIELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~m----P-dmdGleLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
.+.+++...++ ..+|.|.+.-+- . ...-++++.++++..+ ++|||.-.+-.+...+.+++.+||+.+..=
T Consensus 234 ~~~e~a~~a~~--~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 234 ITAEDARLAVQ--HGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIG 309 (370)
T ss_dssp CSHHHHHHHHH--TTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CCHHHHHHHHH--cCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeec
Confidence 35666665554 458888874321 1 1245777888877543 699999999989999999999999998753
No 320
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=30.52 E-value=93 Score=30.21 Aligned_cols=78 Identities=8% Similarity=-0.022 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCceEEEEeCCCCC---CCHHHHHHHHHhhCC---CCcEEEEecCCCHHHHHHHHHc--CCcEEEe-----
Q 043479 8 EALATVRIQRDIDLVVTDLHMPE---MNGIELQKEINEEFT---HLPVMVMSSDDRESVIMKALAS--GVAFYIL----- 74 (534)
Q Consensus 8 EALe~L~~~~~pDLVLLDi~mPd---mdGleLL~~Lr~~~p---~ipVIVLSs~~d~~~~~~AL~a--GA~dyL~----- 74 (534)
+.++.+++ .--.+++.|+.-.+ .-.+++++++.+..| .+|||.-..-.+.+.+.++++. |+++.+.
T Consensus 162 e~a~~~~~-~a~~il~t~i~~dG~~~G~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~ 240 (260)
T 2agk_A 162 DTFRELRK-YTNEFLIHAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLD 240 (260)
T ss_dssp HHHHHHTT-TCSEEEEEC-------CCCCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBG
T ss_pred HHHHHHHH-hcCEEEEEeeccccCcCCCCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHH
Confidence 66677665 42345666765422 135789999988764 6999988888888889999987 9988653
Q ss_pred ---CC-CChHHHHHHH
Q 043479 75 ---KP-LNPDDLKNVW 86 (534)
Q Consensus 75 ---KP-~s~eeL~~aI 86 (534)
.+ +...++++.+
T Consensus 241 l~~g~~~~~~~~~~~~ 256 (260)
T 2agk_A 241 IFGGNLVKFEDCCRWN 256 (260)
T ss_dssp GGTCSSBCHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHH
Confidence 33 6666665543
No 321
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=30.43 E-value=84 Score=30.38 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=49.8
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCCC-C-CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMPE-M-NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mPd-m-dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
+.++.|+.+.++. .+|+|=+ .|. . -|.++++.++.-.|++|++. ++--+.+.+.+++++|+...+
T Consensus 134 v~TptEi~~A~~~--Gad~vK~---FPa~~~gG~~~lkal~~p~p~ip~~p-tGGI~~~n~~~~l~aGa~~~v 200 (232)
T 4e38_A 134 VNNPSTVEAALEM--GLTTLKF---FPAEASGGISMVKSLVGPYGDIRLMP-TGGITPSNIDNYLAIPQVLAC 200 (232)
T ss_dssp ECSHHHHHHHHHT--TCCEEEE---CSTTTTTHHHHHHHHHTTCTTCEEEE-BSSCCTTTHHHHHTSTTBCCE
T ss_pred CCCHHHHHHHHHc--CCCEEEE---CcCccccCHHHHHHHHHHhcCCCeee-EcCCCHHHHHHHHHCCCeEEE
Confidence 4688999988874 5888876 553 3 38999999999888899876 444457788899999977654
No 322
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=30.37 E-value=52 Score=32.90 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=43.8
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHH----HHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQK----EINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~----~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.+.+|+.+.++. ..|.|.+|.. + .+.++ .++..+|+++|.+ |+--+.+.+....+.||+.+-.
T Consensus 203 ev~tlee~~~A~~a--GaD~I~ld~~----~-~~~l~~~v~~l~~~~~~~~I~A-SGGIt~~ni~~~~~aGaD~i~v 271 (299)
T 2jbm_A 203 ECSSLQEAVQAAEA--GADLVLLDNF----K-PEELHPTATVLKAQFPSVAVEA-SGGITLDNLPQFCGPHIDVISM 271 (299)
T ss_dssp EESSHHHHHHHHHT--TCSEEEEESC----C-HHHHHHHHHHHHHHCTTSEEEE-ESSCCTTTHHHHCCTTCCEEEC
T ss_pred ecCCHHHHHHHHHc--CCCEEEECCC----C-HHHHHHHHHHhhccCCCeeEEE-ECCCCHHHHHHHHHCCCCEEEE
Confidence 46678887777764 5899999962 2 33333 3444567677654 5555778888888999976644
No 323
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=29.96 E-value=93 Score=25.01 Aligned_cols=41 Identities=10% Similarity=0.232 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHhcc-CCCcHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043479 167 SLHNRFLQAIRHIGL-EKAVPKKILEFMNVPGLTRENVASHLQKY 210 (534)
Q Consensus 167 eLh~RFleaLe~LGl-ekAvpK~ILe~M~V~GLT~~tVaSHLQKy 210 (534)
+...+.++++...+. +....++|++.++ +++.+|..||.+.
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg---vsr~tV~~~L~~L 51 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLG---TPKKEINRVLYSL 51 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHT---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHC---cCHHHHHHHHHHH
Confidence 344556666666652 2455699999999 8999999998765
No 324
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=29.96 E-value=67 Score=32.87 Aligned_cols=63 Identities=24% Similarity=0.399 Sum_probs=48.5
Q ss_pred CHHHHHHHHHhc--CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcE
Q 043479 5 RPVEALATVRIQ--RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAF 71 (534)
Q Consensus 5 s~~EALe~L~~~--~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~d 71 (534)
+..||++.+... +.-|+|++- |.+.-+++++.+++.+ ++|+.+.-...+-..+..|.+.|..+
T Consensus 238 N~~EAlrE~~~Di~EGAD~vMVK---Pal~YLDIir~vk~~~-~~PvaaYqVSGEYAMikaAa~~GwiD 302 (337)
T 1w5q_A 238 NSDEALHEVAADLAEGADMVMVK---PGMPYLDIVRRVKDEF-RAPTFVYQVSGEYAMHMGAIQNGWLA 302 (337)
T ss_dssp CSHHHHHHHHHHHHTTCSEEEEE---SCGGGHHHHHHHHHHH-CSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred ChHHHHHHHHhhHHhCCCEEEEc---CCCchHHHHHHHHHhc-CCCEEEEEcCcHHHHHHHHHHcCCcc
Confidence 557888766542 568999987 7777899999999887 69999888776666677777777665
No 325
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=29.89 E-value=1.3e+02 Score=30.25 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=47.5
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCC-cEEEeCCCCh
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGV-AFYILKPLNP 79 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA-~dyL~KP~s~ 79 (534)
+.++|++.++.-.++++..++-=++. +.++.+++|++..+ +||+.-=...+.....++++.++ +.+..|+...
T Consensus 195 ~~~~a~~~~~~L~~~~i~~iEqP~~~-~d~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~ 268 (354)
T 3jva_A 195 TPKDAVKAIQALADYQIELVEQPVKR-RDLEGLKYVTSQVN-TTIMADESCFDAQDALELVKKGTVDVINIKLMKC 268 (354)
T ss_dssp CHHHHHHHHHHTTTSCEEEEECCSCT-TCHHHHHHHHHHCS-SEEEESTTCCSHHHHHHHHHHTCCSEEEECHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCh-hhHHHHHHHHHhCC-CCEEEcCCcCCHHHHHHHHHcCCCCEEEECchhc
Confidence 56788887766456788888754443 34677788887654 77665333345667778888775 5555887543
No 326
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=29.76 E-value=1.6e+02 Score=31.55 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=46.3
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCCC-----------CCCHHHHHHHHHhhC--CCCcEEEEecCCCHHHHHHHHHcCCc
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHMP-----------EMNGIELQKEINEEF--THLPVMVMSSDDRESVIMKALASGVA 70 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~mP-----------dmdGleLL~~Lr~~~--p~ipVIVLSs~~d~~~~~~AL~aGA~ 70 (534)
.+.++|..+++. ..|.|++...-. +...++++..+.+.. ..+|||.-.+-.+...+.+|+.+||+
T Consensus 306 ~t~e~a~~~~~a--Gad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~ 383 (511)
T 3usb_A 306 ATAEATKALIEA--GANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAH 383 (511)
T ss_dssp CSHHHHHHHHHH--TCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCS
T ss_pred ccHHHHHHHHHh--CCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCch
Confidence 456666666554 478777643211 123455555554322 25899988888899999999999999
Q ss_pred EEEeC
Q 043479 71 FYILK 75 (534)
Q Consensus 71 dyL~K 75 (534)
..+.=
T Consensus 384 ~V~vG 388 (511)
T 3usb_A 384 VVMLG 388 (511)
T ss_dssp EEEES
T ss_pred hheec
Confidence 98764
No 327
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=29.52 E-value=1.6e+02 Score=30.14 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCceEEEEeCC--CCC---CCHHHHHHHHHhhCCCCcEEEEecCCC---HHHHHHHHHcCCcEEEeC--
Q 043479 6 PVEALATVRIQRDIDLVVTDLH--MPE---MNGIELQKEINEEFTHLPVMVMSSDDR---ESVIMKALASGVAFYILK-- 75 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~--mPd---mdGleLL~~Lr~~~p~ipVIVLSs~~d---~~~~~~AL~aGA~dyL~K-- 75 (534)
..+|++++.. ..-+|||+-+. -|. .--+..+..|++.+|++|| .+|++.. ......|+.+||+ +|.|
T Consensus 150 i~~Ave~i~~-~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lpV-G~SdHt~g~~~~~~~AAvAlGA~-vIEkH~ 226 (350)
T 3g8r_A 150 IDKVVSFMLH-RGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVRI-GYSTHEDPDLMEPIMLAVAQGAT-VFEKHV 226 (350)
T ss_dssp HHHHHHHHHT-TTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEE-EEEECCCSSCCHHHHHHHHTTCC-EEEEEB
T ss_pred HHHHHHHHHH-cCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCCE-EcCCCCCCCccHHHHHHHHcCCC-EEEEec
Confidence 3556777766 33489995432 231 1234567778888888996 5787764 2345678899997 6655
Q ss_pred ------------CCChHHHHHHHHHHHH
Q 043479 76 ------------PLNPDDLKNVWQYAMT 91 (534)
Q Consensus 76 ------------P~s~eeL~~aI~~aL~ 91 (534)
.+.+++|.+.++.+..
T Consensus 227 tldr~~g~D~~~Sl~P~ef~~lv~~ir~ 254 (350)
T 3g8r_A 227 GLPTDQYGINNYSANPEQVRRWLAAAAR 254 (350)
T ss_dssp CCCBTTBCCCTTCBCHHHHHHHHHHHHH
T ss_pred CcccCCCCcccccCCHHHHHHHHHHHHH
Confidence 2356777777666543
No 328
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=29.48 E-value=2.3e+02 Score=26.22 Aligned_cols=62 Identities=11% Similarity=0.217 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCceEEEEeCCCCC----CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEE
Q 043479 8 EALATVRIQRDIDLVVTDLHMPE----MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFY 72 (534)
Q Consensus 8 EALe~L~~~~~pDLVLLDi~mPd----mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dy 72 (534)
+.++.+.. ...|.|.++...-. ..-.++++.+++..+..+|++ ...+.+.+..+.+.|++.+
T Consensus 92 ~~i~~~~~-~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~--~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 92 TEVDQLAA-LNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMA--DISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp HHHHHHHT-TTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEE--ECSSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHH-cCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHHcCCCEE
Confidence 33444444 46788888876522 244688888888776555433 3345566777888888754
No 329
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=29.39 E-value=1.4e+02 Score=30.93 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=50.2
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCCC-----CCCHHHHHHHHHhhC-CCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHMP-----EMNGIELQKEINEEF-THLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~mP-----dmdGleLL~~Lr~~~-p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.++|....+ ..+|.|++.-+-. +..-++++.++++.. ..+|||+-.+-.+...+.+++.+||+.+..
T Consensus 261 ~~~e~A~~a~~--aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~i 335 (392)
T 2nzl_A 261 LRGDDAREAVK--HGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFV 335 (392)
T ss_dssp CCHHHHHHHHH--TTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHH--cCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEE
Confidence 35667666655 4689888853211 234577888887643 369999888888999999999999999864
No 330
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=29.38 E-value=1.4e+02 Score=30.76 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=48.9
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCC-----------CCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCC
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMP-----------EMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGV 69 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mP-----------dmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA 69 (534)
+.+.++|.++++. ..|.|.+.+.-. +...++++..+.+. ..++|||..-+-.+...+.+++.+||
T Consensus 157 v~t~e~A~~a~~a--GAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GA 234 (366)
T 4fo4_A 157 VATAEGARALIEA--GVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGA 234 (366)
T ss_dssp ECSHHHHHHHHHH--TCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTC
T ss_pred eCCHHHHHHHHHc--CCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCC
Confidence 4577777777654 578888732110 12345666666542 34689998888888889999999999
Q ss_pred cEEEeC
Q 043479 70 AFYILK 75 (534)
Q Consensus 70 ~dyL~K 75 (534)
+.+..=
T Consensus 235 d~V~vG 240 (366)
T 4fo4_A 235 SCVMVG 240 (366)
T ss_dssp SEEEES
T ss_pred CEEEEC
Confidence 998653
No 331
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=29.37 E-value=2.4e+02 Score=28.10 Aligned_cols=68 Identities=10% Similarity=0.136 Sum_probs=48.8
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCCCC------------C--HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcC
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMPEM------------N--GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASG 68 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mPdm------------d--GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aG 68 (534)
+.+.++|...++. ..|.|++.-+ ++. . .++++.++++.. ++|||.-.+-.+...+.+++.+|
T Consensus 157 v~s~e~A~~a~~a--Gad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~~~-~ipVIa~GGI~~g~Dv~kalalG 232 (336)
T 1ypf_A 157 VGTPEAVRELENA--GADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAKAA-SKPIIADGGIRTNGDVAKSIRFG 232 (336)
T ss_dssp ECSHHHHHHHHHH--TCSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHHTC-SSCEEEESCCCSTHHHHHHHHTT
T ss_pred cCCHHHHHHHHHc--CCCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcC
Confidence 3466777776654 4788877432 211 1 366777777654 69999988888999999999999
Q ss_pred CcEEEe
Q 043479 69 VAFYIL 74 (534)
Q Consensus 69 A~dyL~ 74 (534)
|+....
T Consensus 233 AdaV~i 238 (336)
T 1ypf_A 233 ATMVMI 238 (336)
T ss_dssp CSEEEE
T ss_pred CCEEEe
Confidence 998764
No 332
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=29.36 E-value=78 Score=30.69 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCceEEEEeCCC------CCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 6 PVEALATVRIQRDIDLVVTDLHM------PEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~m------PdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.++..+++.. .|++|+-... .+.-+..+++.+.. .+|||+ +.... ..+.+..+ .+++..|-+.
T Consensus 263 ~~~~~~~~~~---ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~---G~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d~ 331 (394)
T 3okp_A 263 YQDMINTLAA---ADIFAMPARTRGGGLDVEGLGIVYLEAQAC---GVPVIA-GTSGG---APETVTPA-TGLVVEGSDV 331 (394)
T ss_dssp HHHHHHHHHH---CSEEEECCCCBGGGTBCCSSCHHHHHHHHT---TCCEEE-CSSTT---GGGGCCTT-TEEECCTTCH
T ss_pred HHHHHHHHHh---CCEEEecCccccccccccccCcHHHHHHHc---CCCEEE-eCCCC---hHHHHhcC-CceEeCCCCH
Confidence 3555666654 5888875443 14456677777654 477765 33322 22344567 8999999999
Q ss_pred HHHHHHHHHHHHH
Q 043479 80 DDLKNVWQYAMTY 92 (534)
Q Consensus 80 eeL~~aI~~aL~~ 92 (534)
++|.++|.+++..
T Consensus 332 ~~l~~~i~~l~~~ 344 (394)
T 3okp_A 332 DKLSELLIELLDD 344 (394)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998853
No 333
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=29.35 E-value=2.4e+02 Score=28.55 Aligned_cols=50 Identities=8% Similarity=0.113 Sum_probs=35.8
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEe
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMS 53 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLS 53 (534)
.+..|.|+++.++..-++|++=.++.+....++++.+|+.....|||++-
T Consensus 209 ~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e~~~~~~~r~~~~~KPVV~~k 258 (334)
T 3mwd_B 209 STFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWC 258 (334)
T ss_dssp SCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHHHHHTTSCCSCEEEEE
T ss_pred CCHHHHHHHHhcCCCCCEEEEEEecCChHHHHHHHHHHhhcCCCCEEEEE
Confidence 36788999998754567777755556555578888888755568888774
No 334
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=29.33 E-value=81 Score=30.19 Aligned_cols=42 Identities=17% Similarity=0.081 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 33 GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 33 GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
..++++++++.. ++||++-.+-.+.+.+.+++++||++++.=
T Consensus 189 ~~~~i~~v~~~~-~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhc-CCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 556888888764 589998888888999999999999999864
No 335
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=29.32 E-value=1e+02 Score=30.81 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=46.7
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCC-CCCHHHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHH-cCCcEEEe
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMP-EMNGIELQKEINEEFT-HLPVMVMSSDDRESVIMKALA-SGVAFYIL 74 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mP-dmdGleLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~-aGA~dyL~ 74 (534)
+.++.+|++.+.. ..+|-||+-=.-+ ..+|++.++++.+... .++|++ -+--..+-+.+.++ .|+..|-.
T Consensus 165 ~~d~~~Ale~Li~-lGvdrILTSG~~~~a~~Gl~~Lk~Lv~~a~~rI~Ima-GGGV~~~Ni~~l~~~tG~~~~H~ 237 (287)
T 3iwp_A 165 VHDPMAALETLLT-LGFERVLTSGCDSSALEGLPLIKRLIEQAKGRIVVMP-GGGITDRNLQRILEGSGATEFHC 237 (287)
T ss_dssp CSCHHHHHHHHHH-HTCSEEEECTTSSSTTTTHHHHHHHHHHHTTSSEEEE-CTTCCTTTHHHHHHHHCCSEEEE
T ss_pred cCCHHHHHHHHHH-cCCCEEECCCCCCChHHhHHHHHHHHHHhCCCCEEEE-CCCcCHHHHHHHHHhhCCCEEeE
Confidence 3578899999887 5799999965544 3789999999976543 344443 33334444445444 78887754
No 336
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=29.13 E-value=2.2e+02 Score=28.27 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=44.2
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHH-hhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEIN-EEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr-~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
++.+.+|+.+.++. ..|.|.+|-.-| +.++++. .....+|+++ ++--+.+.+....+.|++.+-.
T Consensus 202 ev~t~eea~eA~~a--GaD~I~ld~~~~-----~~~k~av~~v~~~ipi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 202 EVRSLEELEEALEA--GADLILLDNFPL-----EALREAVRRVGGRVPLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp EESSHHHHHHHHHH--TCSEEEEESCCH-----HHHHHHHHHHTTSSCEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred EeCCHHHHHHHHHc--CCCEEEECCCCH-----HHHHHHHHHhCCCCeEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 56788898888865 589999996433 2233332 2223577655 6666788888899999987753
No 337
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=29.12 E-value=83 Score=32.16 Aligned_cols=80 Identities=10% Similarity=-0.005 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|+++++.-.++++..++--++. +-++.+++|++.. .+||+.-=...+.....++++.++.+++ .|+...--|.
T Consensus 221 ~~~~ai~~~~~l~~~~i~~iE~P~~~-~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 298 (403)
T 2ox4_A 221 DLVSAIQFAKAIEEFNIFFYEEINTP-LNPRLLKEAKKKI-DIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCGGFT 298 (403)
T ss_dssp CHHHHHHHHHHHGGGCEEEEECCSCT-TSTHHHHHHHHTC-CSCEEECTTCCHHHHHHHHHHTTCCSEECCCHHHHTHHH
T ss_pred CHHHHHHHHHHHHhhCCCEEeCCCCh-hhHHHHHHHHHhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 46677776654345677777654443 3466677777654 3776643333356677888888866665 6765433344
Q ss_pred HHH
Q 043479 84 NVW 86 (534)
Q Consensus 84 ~aI 86 (534)
+++
T Consensus 299 e~~ 301 (403)
T 2ox4_A 299 EFK 301 (403)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 338
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=29.09 E-value=1.1e+02 Score=31.62 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=50.8
Q ss_pred CHHHHHHHHHhcCCceEEEEeCC-CCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEE-EeCCCCh---
Q 043479 5 RPVEALATVRIQRDIDLVVTDLH-MPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFY-ILKPLNP--- 79 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~-mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dy-L~KP~s~--- 79 (534)
+.++|++.++.-.++++.+++-= ++. +-++.+++|++..+ +||+.-=...+.....++++.|+.++ ..|+...
T Consensus 225 ~~~~A~~~~~~L~~~~i~~iEqP~~~~-~~~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGi 302 (410)
T 3dip_A 225 GTHAAARICNALADYGVLWVEDPIAKM-DNIPAVADLRRQTR-APICGGENLAGTRRFHEMLCADAIDFVMLDLTWCGGL 302 (410)
T ss_dssp CHHHHHHHHHHGGGGTCSEEECCBSCT-TCHHHHHHHHHHHC-CCEEECTTCCSHHHHHHHHHTTCCSEEEECTTTSSCH
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCCc-ccHHHHHHHHhhCC-CCEEecCCcCCHHHHHHHHHcCCCCeEeecccccCCH
Confidence 56777776654334667677644 343 23677778877543 78765444456677888888886555 5888654
Q ss_pred HHHHHHHHHH
Q 043479 80 DDLKNVWQYA 89 (534)
Q Consensus 80 eeL~~aI~~a 89 (534)
.+.+++...+
T Consensus 303 t~~~~ia~~A 312 (410)
T 3dip_A 303 SEGRKIAALA 312 (410)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 339
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=29.00 E-value=1.1e+02 Score=30.98 Aligned_cols=83 Identities=13% Similarity=-0.026 Sum_probs=49.4
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCCh---H
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNP---D 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~---e 80 (534)
+.++|++.++.-.++++..++--++. +.++.+++|++..+ +||+.-=...+.....++++.++.+++ .|+... .
T Consensus 203 ~~~~a~~~~~~l~~~~i~~iEqP~~~-~d~~~~~~l~~~~~-iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~ 280 (371)
T 2ovl_A 203 TVDGAIRAARALAPFDLHWIEEPTIP-DDLVGNARIVRESG-HTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYT 280 (371)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSCT-TCHHHHHHHHHHHC-SCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHH
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCc-ccHHHHHHHHhhCC-CCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHH
Confidence 45666666544233555555543432 34677777776543 787654444567778888888865555 888654 4
Q ss_pred HHHHHHHHH
Q 043479 81 DLKNVWQYA 89 (534)
Q Consensus 81 eL~~aI~~a 89 (534)
+.++++..+
T Consensus 281 ~~~~i~~~A 289 (371)
T 2ovl_A 281 TFRKVAALA 289 (371)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 340
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=28.76 E-value=1.5e+02 Score=29.41 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHH
Q 043479 7 VEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVW 86 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI 86 (534)
++..+++.. .|++|+-.. .+.-|..+++.+.. .+|||+. ... ...+.+..+..+++..|.+.++|.++|
T Consensus 317 ~~~~~~~~~---adv~v~ps~-~e~~~~~~~Eama~---G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~d~~~la~~i 385 (438)
T 3c48_A 317 SELVAVYRA---ADIVAVPSF-NESFGLVAMEAQAS---GTPVIAA-RVG---GLPIAVAEGETGLLVDGHSPHAWADAL 385 (438)
T ss_dssp HHHHHHHHH---CSEEEECCS-CCSSCHHHHHHHHT---TCCEEEE-SCT---THHHHSCBTTTEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHh---CCEEEECcc-ccCCchHHHHHHHc---CCCEEec-CCC---ChhHHhhCCCcEEECCCCCHHHHHHHH
Confidence 455555554 577776432 23446667776653 4777653 322 233455677889999999999999999
Q ss_pred HHHHHH
Q 043479 87 QYAMTY 92 (534)
Q Consensus 87 ~~aL~~ 92 (534)
.+++..
T Consensus 386 ~~l~~~ 391 (438)
T 3c48_A 386 ATLLDD 391 (438)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 998863
No 341
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=28.72 E-value=1.1e+02 Score=29.93 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCCC-CcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHH
Q 043479 34 IELQKEINEEFTH-LPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYA 89 (534)
Q Consensus 34 leLL~~Lr~~~p~-ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~a 89 (534)
.+.++.+++..+. .+|++-+. +.+.+.+++++|++.+..-+++++.|+.+++.+
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev~--tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l 223 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIECE--SFEEAKNAMNAGADIVMCDNLSVLETKEIAAYR 223 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEES--SHHHHHHHHHHTCSEEEEETCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEEcC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4677788877775 45665433 346678889999999989999999998888754
No 342
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=28.59 E-value=43 Score=32.64 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCceEEEEeCCC--CCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQRDIDLVVTDLHM--PEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~m--PdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.++++.+.+ ...|+|++-... ...+-.+++++||+ .++|||++.... ..+..|+++||.
T Consensus 26 ~~~l~~~~~-~GtDaI~vGgs~gvt~~~~~~~v~~ik~--~~~Piil~p~~~------~~~~~gaD~il~ 86 (235)
T 3w01_A 26 DDDLDAICM-SQTDAIMIGGTDDVTEDNVIHLMSKIRR--YPLPLVLEISNI------ESVMPGFDFYFV 86 (235)
T ss_dssp HHHHHHHHT-SSCSEEEECCSSCCCHHHHHHHHHHHTT--SCSCEEEECCCS------TTCCTTCSEEEE
T ss_pred HHHHHHHHH-cCCCEEEECCcCCcCHHHHHHHHHHhcC--cCCCEEEecCCH------HHhhcCCCEEEE
No 343
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=28.53 E-value=1e+02 Score=30.80 Aligned_cols=87 Identities=9% Similarity=-0.011 Sum_probs=51.1
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCC--CCC---CHHHHHHHHHhhCCCCcEEEEecCC------------C-----HHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHM--PEM---NGIELQKEINEEFTHLPVMVMSSDD------------R-----ESVIM 62 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~m--Pdm---dGleLL~~Lr~~~p~ipVIVLSs~~------------d-----~~~~~ 62 (534)
....|++.++.....+++|+.... +-. -.+..+..+++.++.+||++=+++. . .....
T Consensus 147 ei~~Av~~i~~~Gn~~i~L~~rg~~~~y~~~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~ 226 (292)
T 1o60_A 147 QMGNIVEKIEECGNDKIILCDRGTNFGYDNLIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELAR 226 (292)
T ss_dssp GHHHHHHHHHHTTCCCEEEEECCEECSTTCEECCTTHHHHHHHHTTSCCEEEEHHHHCC------------CTTHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEECCCCCCCCccccCHHHHHHHHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHH
Confidence 445677777664567999988632 211 1233445677776668877634443 1 24556
Q ss_pred HHHHcCCcEEE-eCCC-------------ChHHHHHHHHHHHH
Q 043479 63 KALASGVAFYI-LKPL-------------NPDDLKNVWQYAMT 91 (534)
Q Consensus 63 ~AL~aGA~dyL-~KP~-------------s~eeL~~aI~~aL~ 91 (534)
.+..+||++.+ .|-+ .+++|...++.+..
T Consensus 227 aAva~Ga~Gl~IE~H~~~d~al~Dg~~sl~p~~l~~lv~~ir~ 269 (292)
T 1o60_A 227 SGLAVGIAGLFLEAHPNPNQAKCDGPSALPLSALEGFVSQMKA 269 (292)
T ss_dssp HHHHHCCSEEEEEEESSGGGCSSCCTTCEEGGGHHHHHHHHHH
T ss_pred HHHHcCCCEEEEEecCCcccCCchhhcCCCHHHHHHHHHHHHH
Confidence 77889999754 4432 45666666655543
No 344
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=28.14 E-value=99 Score=32.92 Aligned_cols=68 Identities=12% Similarity=-0.020 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCC-HHHHHHHHHhhCCC-CcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMN-GIELQKEINEEFTH-LPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmd-GleLL~~Lr~~~p~-ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+..+.++.+.+ ..++++.+|....... -++.++.|++..++ +||| +....+.+.+..+.++||+...+
T Consensus 242 ~~~e~~~~l~e-~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi-~G~V~t~~~a~~l~~aGad~I~V 311 (503)
T 1me8_A 242 DFRERVPALVE-AGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVG-AGNIVDGEGFRYLADAGADFIKI 311 (503)
T ss_dssp SHHHHHHHHHH-HTCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEE-EEEECSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHh-hhccceEEecccCcccchhhHHHHHHHhCCCCceEe-eccccCHHHHHHHHHhCCCeEEe
Confidence 44455666655 4689999987644333 35677888887776 7776 34445677788899999998754
No 345
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=28.13 E-value=1.2e+02 Score=21.62 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=35.1
Q ss_pred ccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKY 210 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKy 210 (534)
-.|+.+=...+++++..+|..+ =+.|++.| ++-|...++.+..+|
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDD--WKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSC--HHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCC--HHHHHHHc--CCCCHHHHHHHHHHH
Confidence 3699999999999999998533 48898887 468888888775543
No 346
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=28.11 E-value=1.5e+02 Score=29.09 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHH
Q 043479 6 PVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNV 85 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~a 85 (534)
.++..+++.. .|++|+-... +.-+..+++.+.. .+|||+ |.. ....+.+..| .+++..|.+.++|.++
T Consensus 321 ~~~~~~~~~~---adv~v~ps~~-e~~~~~~~EAma~---G~Pvi~-s~~---~~~~e~~~~~-~g~~~~~~d~~~la~~ 388 (439)
T 3fro_A 321 REFVRELYGS---VDFVIIPSYF-EPFGLVALEAMCL---GAIPIA-SAV---GGLRDIITNE-TGILVKAGDPGELANA 388 (439)
T ss_dssp HHHHHHHHTT---CSEEEECBSC-CSSCHHHHHHHHT---TCEEEE-ESS---THHHHHCCTT-TCEEECTTCHHHHHHH
T ss_pred HHHHHHHHHH---CCEEEeCCCC-CCccHHHHHHHHC---CCCeEE-cCC---CCcceeEEcC-ceEEeCCCCHHHHHHH
Confidence 3444455543 5777765443 4456667777654 467665 332 2334455556 8999999999999999
Q ss_pred HHHHHH
Q 043479 86 WQYAMT 91 (534)
Q Consensus 86 I~~aL~ 91 (534)
|.+++.
T Consensus 389 i~~ll~ 394 (439)
T 3fro_A 389 ILKALE 394 (439)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999986
No 347
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=27.90 E-value=1.7e+02 Score=28.54 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCce-EEEEeCCCCCCC--------H---HHHHHHHHhhCCCCcEEEEecCC-CHHH----HHHHHHcCC
Q 043479 7 VEALATVRIQRDID-LVVTDLHMPEMN--------G---IELQKEINEEFTHLPVMVMSSDD-RESV----IMKALASGV 69 (534)
Q Consensus 7 ~EALe~L~~~~~pD-LVLLDi~mPdmd--------G---leLL~~Lr~~~p~ipVIVLSs~~-d~~~----~~~AL~aGA 69 (534)
.++.+.+.+ ..+| .|-+.+..|... . .++++.+++.. ++||++-.... +.+. +..+.++|+
T Consensus 109 ~~~a~~~~~-~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~-~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~ 186 (311)
T 1jub_A 109 IAMLKKIQE-SDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF-TKPLGVKLPPYFDLVHFDIMAEILNQFPL 186 (311)
T ss_dssp HHHHHHHHH-SCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCSHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHh-cCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 344455554 4578 888887655432 1 45666666543 57888754432 3222 344556677
Q ss_pred cEEEeC
Q 043479 70 AFYILK 75 (534)
Q Consensus 70 ~dyL~K 75 (534)
+.+..-
T Consensus 187 d~i~v~ 192 (311)
T 1jub_A 187 TYVNSV 192 (311)
T ss_dssp CEEEEC
T ss_pred cEEEec
Confidence 776653
No 348
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=27.85 E-value=2.2e+02 Score=29.23 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=45.5
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCCC------------CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCc
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMPE------------MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVA 70 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mPd------------mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~ 70 (534)
+.+.++|..+++. ..|.|.+... |+ ...++.+.++.+... |||.-.+-.+...+.+++.+||+
T Consensus 149 V~T~e~A~~a~~a--GaD~I~Vg~g-~G~~~~tr~~~g~g~p~l~aI~~~~~~~~--PVIAdGGI~~~~di~kALa~GAd 223 (361)
T 3r2g_A 149 VATYAGADYLASC--GADIIKAGIG-GGSVCSTRIKTGFGVPMLTCIQDCSRADR--SIVADGGIKTSGDIVKALAFGAD 223 (361)
T ss_dssp ECSHHHHHHHHHT--TCSEEEECCS-SSSCHHHHHHHCCCCCHHHHHHHHTTSSS--EEEEESCCCSHHHHHHHHHTTCS
T ss_pred cCCHHHHHHHHHc--CCCEEEEcCC-CCcCccccccCCccHHHHHHHHHHHHhCC--CEEEECCCCCHHHHHHHHHcCCC
Confidence 4577888777664 5899888543 22 122344444433222 88887787888999999999999
Q ss_pred EEEeC
Q 043479 71 FYILK 75 (534)
Q Consensus 71 dyL~K 75 (534)
.+..=
T Consensus 224 ~V~iG 228 (361)
T 3r2g_A 224 FVMIG 228 (361)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88653
No 349
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=27.67 E-value=2.6e+02 Score=28.29 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=48.5
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCCC------------CCHHHHHHHHHhhC--CCCcEEEEecCCCHHHHHHHHHcC
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMPE------------MNGIELQKEINEEF--THLPVMVMSSDDRESVIMKALASG 68 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mPd------------mdGleLL~~Lr~~~--p~ipVIVLSs~~d~~~~~~AL~aG 68 (534)
+.+.++|...++. ..|.|.+... ++ ..-++++..+.+.. ..+|||.-.+-.+...+.+++.+|
T Consensus 169 v~t~e~A~~a~~a--GaD~I~v~~g-~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalG 245 (351)
T 2c6q_A 169 VVTGEMVEELILS--GADIIKVGIG-PGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAG 245 (351)
T ss_dssp ECSHHHHHHHHHT--TCSEEEECSS-CSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHh--CCCEEEECCC-CCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcC
Confidence 4567788777664 5898877532 21 22344555554321 358998888888999999999999
Q ss_pred CcEEE-eCCC
Q 043479 69 VAFYI-LKPL 77 (534)
Q Consensus 69 A~dyL-~KP~ 77 (534)
|+... -++|
T Consensus 246 A~~V~vG~~f 255 (351)
T 2c6q_A 246 ADFVMLGGML 255 (351)
T ss_dssp CSEEEESTTT
T ss_pred CCceeccHHH
Confidence 99874 4555
No 350
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=27.66 E-value=1.2e+02 Score=30.90 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=46.9
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCC-----------CCCCHHHHHHHHHhh--CCCCcEEEEecCCCHHHHHHHHHcCC
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHM-----------PEMNGIELQKEINEE--FTHLPVMVMSSDDRESVIMKALASGV 69 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~m-----------PdmdGleLL~~Lr~~--~p~ipVIVLSs~~d~~~~~~AL~aGA 69 (534)
+.+.++|.++++ ...|.|.+-..- .+...++++.++.+. ...+|||.--+-.+...+.+++.+||
T Consensus 153 v~t~e~A~~l~~--aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GA 230 (361)
T 3khj_A 153 VVTEEATKELIE--NGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGA 230 (361)
T ss_dssp ECSHHHHHHHHH--TTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHH--cCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCC
Confidence 456777766665 358888873210 012345566666432 12589988878778899999999999
Q ss_pred cEEEeC
Q 043479 70 AFYILK 75 (534)
Q Consensus 70 ~dyL~K 75 (534)
+.+..=
T Consensus 231 d~V~vG 236 (361)
T 3khj_A 231 SSVMIG 236 (361)
T ss_dssp SEEEES
T ss_pred CEEEEC
Confidence 998653
No 351
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=27.59 E-value=1.7e+02 Score=23.12 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=35.4
Q ss_pred ccCCchhhHHHHHHHHHhccCCCc-HHHHHHHcCCCCCCHHHHHHHHHHH
Q 043479 162 VAWTDSLHNRFLQAIRHIGLEKAV-PKKILEFMNVPGLTRENVASHLQKY 210 (534)
Q Consensus 162 v~Wt~eLh~RFleaLe~LGlekAv-pK~ILe~M~V~GLT~~tVaSHLQKy 210 (534)
-.||.+=-..|.+++..++.+..- =.+|++.| +|-|...|+.|...+
T Consensus 19 ~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 19 EPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKLL 66 (73)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 359999999999999999844211 13477776 489999999996654
No 352
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=27.53 E-value=48 Score=31.43 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=54.9
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCCCC--CCHHHHHHHHHhhCCCCcEEEE-ecCCCHHH-HHHHHHcCCcEEEeCCCCh
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHMPE--MNGIELQKEINEEFTHLPVMVM-SSDDRESV-IMKALASGVAFYILKPLNP 79 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~mPd--mdGleLL~~Lr~~~p~ipVIVL-Ss~~d~~~-~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.+++++.+++ ..+.+..+++.++- .-|.++++.|++.+|+.+|++= =-++.+.. ...+.++||+.+-.....-
T Consensus 15 ~~~~~a~~~~~~-~~~~~~~ikvg~~lf~~~G~~~v~~l~~~~p~~~iflDlKl~Dip~t~~~~~~~~Gad~vtVH~~~g 93 (221)
T 3exr_A 15 SNLKGAITAAVS-VGNEVDVIEAGTVCLLQVGSELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICSAT 93 (221)
T ss_dssp SSHHHHHHHHHH-HGGGCSEEEECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHTTTCSEEEEETTSC
T ss_pred CCHHHHHHHHHh-hCCCceEEEECHHHHHhcCHHHHHHHHHhCCCCcEEEEEEeeccHHHHHHHHHHcCCCEEEEeccCC
Confidence 567889999886 45566677775542 3467889999988776666541 11133333 3446788999887776644
Q ss_pred -HHHHHHHHHHH
Q 043479 80 -DDLKNVWQYAM 90 (534)
Q Consensus 80 -eeL~~aI~~aL 90 (534)
+.+..+++.+-
T Consensus 94 ~~~l~~a~~~~~ 105 (221)
T 3exr_A 94 IPTMKAARKAIE 105 (221)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 44655555543
No 353
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=27.35 E-value=2.3e+02 Score=27.21 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=39.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHHHHH
Q 043479 19 IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 19 pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL~~ 92 (534)
.|++|+.. |.-+++.+.. .+|||+...... ..+.++.| .+++..+ +.++|.++|.+++..
T Consensus 283 ad~~v~~s------g~~~lEA~a~---G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPSL---GVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLSD 342 (375)
T ss_dssp CSEEEECC------HHHHHHHHHH---TCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred CcEEEECC------CChHHHHHhc---CCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHhC
Confidence 57777643 4445555543 478776522122 23345677 8898876 999999999998853
No 354
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=27.33 E-value=1.9e+02 Score=29.70 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=51.0
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCCC-----CCCHHHHHHHHHhh-CCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHMP-----EMNGIELQKEINEE-FTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~mP-----dmdGleLL~~Lr~~-~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.++|....+ ..+|.|++.-+-. ....++++.++++. ...+|||.-.+-.+...+.+++.+||+.+..
T Consensus 226 ~~~e~A~~a~~--~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 226 LTKEDAELAMK--HNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFL 300 (352)
T ss_dssp CSHHHHHHHHH--TTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CcHHHHHHHHH--cCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 45677766655 4689888743211 23457888888654 3469999999999999999999999999865
No 355
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=27.30 E-value=2.9e+02 Score=23.55 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=27.8
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCcEEEeCC--CChHHHHHHHHHHHHH
Q 043479 46 HLPVMVMSSDDRESVIMKALASGVAFYILKP--LNPDDLKNVWQYAMTY 92 (534)
Q Consensus 46 ~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP--~s~eeL~~aI~~aL~~ 92 (534)
.+|+|++-...+-....+.+...-.+++..+ ++.++|.++|.+++..
T Consensus 106 G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 154 (170)
T 2o6l_A 106 GIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIND 154 (170)
T ss_dssp TCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred CCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcC
Confidence 3777776554443333344443344555544 4778888888888743
No 356
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=27.09 E-value=1.1e+02 Score=26.94 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=28.1
Q ss_pred CCceEEEEeCCCCCCC---------HHHHHHHHHhhCCCCcEEEEecCC
Q 043479 17 RDIDLVVTDLHMPEMN---------GIELQKEINEEFTHLPVMVMSSDD 56 (534)
Q Consensus 17 ~~pDLVLLDi~mPdmd---------GleLL~~Lr~~~p~ipVIVLSs~~ 56 (534)
.+||+|++.+-.-|.. --++++.+++..|.++||+++...
T Consensus 73 ~~pd~Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~~~~p~~~ii~~~~~P 121 (200)
T 4h08_A 73 TKFDVIHFNNGLHGFDYTEEEYDKSFPKLIKIIRKYAPKAKLIWANTTP 121 (200)
T ss_dssp SCCSEEEECCCSSCTTSCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCC
T ss_pred CCCCeEEEEeeeCCCCCCHHHHHHHHHHHHHHHhhhCCCccEEEeccCC
Confidence 6799999976555431 134667777788888888887643
No 357
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=27.08 E-value=2.5e+02 Score=27.92 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCC----------CC-HHHHHHHHHhhCCCCcEEEEe-cC-CCHHHHHHHHHcCCcE
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPE----------MN-GIELQKEINEEFTHLPVMVMS-SD-DRESVIMKALASGVAF 71 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPd----------md-GleLL~~Lr~~~p~ipVIVLS-s~-~d~~~~~~AL~aGA~d 71 (534)
+.++..+.++. ..+|.|-+++..|. .+ -++.++++++.. ++||++-. +. .+.+.+..+.++||+.
T Consensus 128 ~~~~~~~~~~~-~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~-~~Pv~vK~~~~~~~~~~a~~a~~~Gad~ 205 (349)
T 1p0k_A 128 TAAQAKEAVEM-IGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYEAGAAA 205 (349)
T ss_dssp CHHHHHHHHHH-TTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHHHTCSE
T ss_pred CHHHHHHHHHh-cCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHHHHcCCCE
Confidence 34455555544 45788877766441 11 457888888765 48988753 22 4577788899999999
Q ss_pred EEe
Q 043479 72 YIL 74 (534)
Q Consensus 72 yL~ 74 (534)
+++
T Consensus 206 I~v 208 (349)
T 1p0k_A 206 VDI 208 (349)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
No 358
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=27.04 E-value=87 Score=32.16 Aligned_cols=81 Identities=10% Similarity=0.070 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|+++++.-.++++.+++--++. +-++.+++|++.. .+||+.-=...+.....++++.++.+++ .|+...--|.
T Consensus 222 ~~~~a~~~~~~l~~~~i~~iEeP~~~-~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 299 (410)
T 2qq6_A 222 DIPSSIRFARAMEPFGLLWLEEPTPP-ENLDALAEVRRST-STPICAGENVYTRFDFRELFAKRAVDYVMPDVAKCGGLA 299 (410)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSCT-TCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHH
T ss_pred CHHHHHHHHHHHhhcCCCeEECCCCh-hhHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 45666666544234556566543333 3467777777654 3776654344467778888988876665 6664433444
Q ss_pred HHHH
Q 043479 84 NVWQ 87 (534)
Q Consensus 84 ~aI~ 87 (534)
++++
T Consensus 300 e~~~ 303 (410)
T 2qq6_A 300 EAKR 303 (410)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 359
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=27.03 E-value=74 Score=22.55 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=23.7
Q ss_pred HHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHH
Q 043479 171 RFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQ 208 (534)
Q Consensus 171 RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQ 208 (534)
....+...+. +....++|++.++ +++.+|..|+.
T Consensus 20 ~~~~i~~l~~-~g~s~~eIA~~lg---is~~TV~~~l~ 53 (55)
T 2x48_A 20 LVSVAHELAK-MGYTVQQIANALG---VSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHH-TTCCHHHHHHHHT---SCHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHC---cCHHHHHHHHH
Confidence 3334444432 3445899999999 89999988864
No 360
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=26.88 E-value=84 Score=33.21 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHh-cc---CCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 043479 167 SLHNRFLQAIRHI-GL---EKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216 (534)
Q Consensus 167 eLh~RFleaLe~L-Gl---ekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr 216 (534)
.|.++..+++... ++ +...-++|++.|+ +|+++|+.++.+-+..||+
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~Lg---IS~erVRqi~~RAlkKLR~ 425 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFG---VTRERIRQIENKALRKLKY 425 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHH
Confidence 4788888888775 42 5567899999999 9999999999988887773
No 361
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*
Probab=26.80 E-value=1.5e+02 Score=30.38 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++.+++-=++. +.++.+++|++..+ +||+.==...+.....++++.|+.+++ .|+...--|.
T Consensus 225 ~~~~A~~~~~~l~~~~i~~iEeP~~~-~d~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit 302 (383)
T 3toy_A 225 DPAEATRRIARLADYDLTWIEEPVPQ-ENLSGHAAVRERSE-IPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGIT 302 (383)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSCT-TCHHHHHHHHHHCS-SCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHHhhCCCEEECCCCc-chHHHHHHHHhhcC-CCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 45666666554334566666543332 33667778877654 776543233345567778888866655 7876654455
Q ss_pred HHHHH
Q 043479 84 NVWQY 88 (534)
Q Consensus 84 ~aI~~ 88 (534)
.+++-
T Consensus 303 ~~~~i 307 (383)
T 3toy_A 303 GWLNV 307 (383)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 362
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Probab=26.59 E-value=87 Score=31.39 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=45.8
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEE-EeCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFY-ILKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dy-L~KP~s~eeL~ 83 (534)
+.+++++.++.-.++++..++--++. +.++.+++|++.. .+||+.-=...+.....++++.++.++ ..|+...--+.
T Consensus 201 ~~~~a~~~~~~l~~~~i~~iE~P~~~-~~~~~~~~l~~~~-~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~ 278 (359)
T 1mdl_A 201 DVPAAIKRSQALQQEGVTWIEEPTLQ-HDYEGHQRIQSKL-NVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVT 278 (359)
T ss_dssp CHHHHHHHHHHHHHHTCSCEECCSCT-TCHHHHHHHHHTC-SSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEECCCCh-hhHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhCCHH
Confidence 34555554433112334344433332 3467777777654 478765444456777888888886555 58887654454
Q ss_pred HHHH
Q 043479 84 NVWQ 87 (534)
Q Consensus 84 ~aI~ 87 (534)
.+++
T Consensus 279 ~~~~ 282 (359)
T 1mdl_A 279 GWIR 282 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 363
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=26.35 E-value=1.7e+02 Score=28.37 Aligned_cols=56 Identities=5% Similarity=0.025 Sum_probs=44.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCC
Q 043479 19 IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKP 76 (534)
Q Consensus 19 pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP 76 (534)
..+|-++. .......++++++++...++|+++=-+-.+.+.+.++++ ||+..+.=.
T Consensus 156 ~~~VYl~s-~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 156 LPIFYLEY-SGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp CSEEEEEC-TTSCCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred CCEEEEeC-CCccChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 46777777 544556889999998764689888778888888888888 999998865
No 364
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.34 E-value=46 Score=28.63 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=33.0
Q ss_pred HHHHhccCCCcHHHHHHHcCCCCCCHHH-HHHHHHHHHHHHHHHH
Q 043479 175 AIRHIGLEKAVPKKILEFMNVPGLTREN-VASHLQKYRIFLKRVA 218 (534)
Q Consensus 175 aLe~LGlekAvpK~ILe~M~V~GLT~~t-VaSHLQKyRl~lkr~a 218 (534)
+++.|-.+....++|+..+++++++... |-+||......+++.-
T Consensus 16 Ii~lL~~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g 60 (105)
T 2gmg_A 16 IIELLLEGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKREG 60 (105)
T ss_dssp HHHHTTTSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHcCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhcCC
Confidence 3344434677789999999987778777 9999998877665543
No 365
>3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A*
Probab=26.13 E-value=2e+02 Score=29.85 Aligned_cols=81 Identities=14% Similarity=0.018 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCC--CHHHHHHHHHcCCcEEE-eCCCChHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDD--RESVIMKALASGVAFYI-LKPLNPDD 81 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~--d~~~~~~AL~aGA~dyL-~KP~s~ee 81 (534)
+..+|++.++.-.++++.+++==++. +.++-+++|++..+ +||.+.+... +.....++++.++.+++ .|+...-=
T Consensus 222 ~~~~A~~~~~~Le~~~l~~iEeP~~~-~d~~~~a~l~~~~~-~pi~Ia~gE~~~~~~~~~~li~~~a~dii~~d~~~~GG 299 (404)
T 3ekg_A 222 DLNYATRLARGAREYGLKWIEEALPP-DDYWGYAELRRNAP-TGMMVTTGEHEATRWGFRMLLEMGCCDIIQPDVGWCGG 299 (404)
T ss_dssp CHHHHHHHHHHHGGGTCCEEECCSCT-TCHHHHHHHHHHSC-TTCEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTH
T ss_pred CHHHHHHHHHHHhhcCCcEEecCCCc-ccHHHHHHHHHhcC-CCeEEEecCccCCHHHHHHHHHcCCCCeEecChhhcCC
Confidence 56677766654344677666643432 33666777777654 6654555543 23456678888877776 77765544
Q ss_pred HHHHHH
Q 043479 82 LKNVWQ 87 (534)
Q Consensus 82 L~~aI~ 87 (534)
|..+++
T Consensus 300 itea~k 305 (404)
T 3ekg_A 300 VTELLK 305 (404)
T ss_dssp HHHHHH
T ss_pred ccHHHH
Confidence 444443
No 366
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=25.86 E-value=3.1e+02 Score=25.91 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCceEEEEeCCC--CCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQRDIDLVVTDLHM--PEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~m--PdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+++.+.+. ...|+|++|... ....-.++++.+++. -++++....+.+...++.++|++.+..
T Consensus 92 ~~i~~~~~--aGad~I~l~~~~~~~p~~l~~~i~~~~~~----g~~v~~~v~t~eea~~a~~~Gad~Ig~ 155 (229)
T 3q58_A 92 QDVDALAQ--AGADIIAFDASFRSRPVDIDSLLTRIRLH----GLLAMADCSTVNEGISCHQKGIEFIGT 155 (229)
T ss_dssp HHHHHHHH--HTCSEEEEECCSSCCSSCHHHHHHHHHHT----TCEEEEECSSHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHH--cCCCEEEECccccCChHHHHHHHHHHHHC----CCEEEEecCCHHHHHHHHhCCCCEEEe
Confidence 34444443 358999998764 223455677777653 234445556778888899999987753
No 367
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=25.77 E-value=2.4e+02 Score=25.75 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=35.3
Q ss_pred CceEEEEeCCC---CCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 18 DIDLVVTDLHM---PEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 18 ~pDLVLLDi~m---PdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
..|.|.++... |+..-.++++.+++..+..+++ +.. .+.+...++.+.|++.+..
T Consensus 88 Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~-~~~-~t~~e~~~~~~~G~d~i~~ 145 (223)
T 1y0e_A 88 QCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIM-ADI-ATVEEAKNAARLGFDYIGT 145 (223)
T ss_dssp TCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEE-EEC-SSHHHHHHHHHTTCSEEEC
T ss_pred CCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEE-ecC-CCHHHHHHHHHcCCCEEEe
Confidence 46887777654 2235568888888877655543 333 4555667788888865543
No 368
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=25.69 E-value=3.2e+02 Score=25.85 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=40.9
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCC
Q 043479 17 RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPL 77 (534)
Q Consensus 17 ~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~ 77 (534)
..+++|=+. +...++.++++.+++.++++.+-.=+ .-+.+.+..|+++||+..+.--+
T Consensus 50 gGv~~iel~--~k~~~~~~~i~~l~~~~~~~~igagt-vl~~d~~~~A~~aGAd~v~~p~~ 107 (225)
T 1mxs_A 50 GGIRTLEVT--LRSQHGLKAIQVLREQRPELCVGAGT-VLDRSMFAAVEAAGAQFVVTPGI 107 (225)
T ss_dssp TTCCEEEEE--SSSTHHHHHHHHHHHHCTTSEEEEEC-CCSHHHHHHHHHHTCSSEECSSC
T ss_pred CCCCEEEEe--cCCccHHHHHHHHHHhCcccEEeeCe-EeeHHHHHHHHHCCCCEEEeCCC
Confidence 457766665 44567889999999888865544333 34668888999999997765333
No 369
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=25.63 E-value=1.6e+02 Score=30.43 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCceEEEEeC-C--CCC--CC--HHHHHHHHHhhCCCCcEEEEecCCCH--------HHHHHHHHcCCcE
Q 043479 7 VEALATVRIQRDIDLVVTDL-H--MPE--MN--GIELQKEINEEFTHLPVMVMSSDDRE--------SVIMKALASGVAF 71 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi-~--mPd--md--GleLL~~Lr~~~p~ipVIVLSs~~d~--------~~~~~AL~aGA~d 71 (534)
..|++.+......+|+||.. . -|. .+ -+..+..+++.+ ++|| ++.+... .....|..+||++
T Consensus 266 ~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~-~lpV--~~D~th~~G~r~~v~~~a~AAvA~GA~g 342 (385)
T 3nvt_A 266 IGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKET-HLPV--MVDVTHSTGRKDLLLPCAKAALAIEADG 342 (385)
T ss_dssp HHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB-SSCE--EEEHHHHHCCGGGHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhc-CCCE--EEcCCCCCCccchHHHHHHHHHHhCCCE
Confidence 45666776545679999997 1 121 11 223344555544 5887 3432211 3456788999998
Q ss_pred EE-eCC-------------CChHHHHHHHHHHHH
Q 043479 72 YI-LKP-------------LNPDDLKNVWQYAMT 91 (534)
Q Consensus 72 yL-~KP-------------~s~eeL~~aI~~aL~ 91 (534)
.+ .|- +++++|...++.+..
T Consensus 343 l~iE~H~~pd~a~~D~~~sl~p~el~~lv~~i~~ 376 (385)
T 3nvt_A 343 VMAEVHPDPAVALSDSAQQMDIPEFEEFWNAILA 376 (385)
T ss_dssp EEEEBCSCGGGCSSCTTTSBCHHHHHHHHHHHHH
T ss_pred EEEEecCChhhcCCcccccCCHHHHHHHHHHHHH
Confidence 54 552 456677777776654
No 370
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=25.62 E-value=1.6e+02 Score=28.96 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=35.7
Q ss_pred CCCCcEEEEecCCC--HHHHHHHHHcCCcEEEeCCC--ChHHHHHHHHHHHH
Q 043479 44 FTHLPVMVMSSDDR--ESVIMKALASGVAFYILKPL--NPDDLKNVWQYAMT 91 (534)
Q Consensus 44 ~p~ipVIVLSs~~d--~~~~~~AL~aGA~dyL~KP~--s~eeL~~aI~~aL~ 91 (534)
.+++-+|+++.... .+.+..|+++|.+-|+.||+ +.++..+.++.+-+
T Consensus 71 ~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 122 (318)
T 3oa2_A 71 ATALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERE 122 (318)
T ss_dssp TTSCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 45677777766543 45688899999999999994 67787777766543
No 371
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=25.40 E-value=2e+02 Score=28.30 Aligned_cols=73 Identities=10% Similarity=0.043 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCC--CCCC---HHHHHHHHHhhCCCCcEEEEecCC------------C-----HHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHM--PEMN---GIELQKEINEEFTHLPVMVMSSDD------------R-----ESVIM 62 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~m--Pdmd---GleLL~~Lr~~~p~ipVIVLSs~~------------d-----~~~~~ 62 (534)
....|++.++....++++|+.... +-.+ .+..+..+++.++++||++=+++. . .....
T Consensus 144 e~~~A~~~i~~~Gn~~i~L~~rg~~~~~~~~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~ 223 (280)
T 2qkf_A 144 QMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLAL 223 (280)
T ss_dssp GHHHHHHHHHHTTCCCEEEEECCEECSTTCEECCTTHHHHHHHHTTTCCEEEEHHHHCC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEECCCCCCCCccccCHHHHHHHHHhCCCCCEEEECCCCccccCccccccCCchhhHHHHHH
Confidence 445667777664567899987542 2111 233555677776668877634444 2 34566
Q ss_pred HHHHcCCcEE-EeCCC
Q 043479 63 KALASGVAFY-ILKPL 77 (534)
Q Consensus 63 ~AL~aGA~dy-L~KP~ 77 (534)
.+...||++. |.|-+
T Consensus 224 aava~Ga~G~~IE~H~ 239 (280)
T 2qkf_A 224 AGMATRLAGLFLESHP 239 (280)
T ss_dssp HHHTTCCSEEEEEC--
T ss_pred HHHHcCCCEEEEeecC
Confidence 7788999854 45543
No 372
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Probab=25.38 E-value=78 Score=32.37 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=49.1
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCC---hH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLN---PD 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s---~e 80 (534)
+.++|++.++.-.++++.+++--++. +.++.+++|++..+ +||+.-=...+.....++++.|+.+++ .|+.. +.
T Consensus 219 ~~~~a~~~~~~l~~~~i~~iE~P~~~-~~~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 296 (393)
T 2og9_A 219 DRPTAQRMCRIFEPFNLVWIEEPLDA-YDHEGHAALALQFD-TPIATGEMLTSAAEHGDLIRHRAADYLMPDAPRVGGIT 296 (393)
T ss_dssp CHHHHHHHHHHHGGGCCSCEECCSCT-TCHHHHHHHHHHCS-SCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHH
T ss_pred CHHHHHHHHHHHHhhCCCEEECCCCc-ccHHHHHHHHHhCC-CCEEeCCCcCCHHHHHHHHHCCCCCEEeeCccccCCHH
Confidence 45666666544233455455533332 34677778877653 887755444567788889999866665 67643 34
Q ss_pred HHHHHHHHH
Q 043479 81 DLKNVWQYA 89 (534)
Q Consensus 81 eL~~aI~~a 89 (534)
+.++++..+
T Consensus 297 ~~~~i~~~A 305 (393)
T 2og9_A 297 PFLKIASLA 305 (393)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 373
>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A
Probab=25.33 E-value=1.2e+02 Score=31.49 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++.+++--++. +-++.+++|++....+||+.-=...+.....++++.|+.+++ .|+...--|.
T Consensus 254 ~~~~a~~~~~~l~~~~i~~iEqP~~~-~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 332 (441)
T 2hxt_A 254 DVGPAIDWMRQLAEFDIAWIEEPTSP-DDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVN 332 (441)
T ss_dssp CHHHHHHHHHTTGGGCCSCEECCSCT-TCHHHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTSSHHH
T ss_pred CHHHHHHHHHHHHhcCCCeeeCCCCH-HHHHHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEeCcceeCCHH
Confidence 46677777665333555566544442 346677777765324787654444466778888888866655 7876654455
Q ss_pred HHHHH
Q 043479 84 NVWQY 88 (534)
Q Consensus 84 ~aI~~ 88 (534)
++++-
T Consensus 333 e~~~i 337 (441)
T 2hxt_A 333 ENLAI 337 (441)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 374
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=25.17 E-value=1.1e+02 Score=32.83 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=41.2
Q ss_pred CCccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 043479 160 PKVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIF 213 (534)
Q Consensus 160 prv~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~ 213 (534)
...+|+.+=+..|+++|..+|- . -+.|++.++ --|...|++|.++||..
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk--d-w~~IA~~Vg--TKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR--D-FQAISDVIG--NKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT--C-HHHHHHHHS--SCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc--C-HHHHHHHhC--CCCHHHHHHHHHHHHHH
Confidence 3568999999999999999983 2 688999866 46899999999988763
No 375
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}
Probab=25.09 E-value=1.1e+02 Score=31.50 Aligned_cols=83 Identities=11% Similarity=0.005 Sum_probs=49.9
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCCh---H
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNP---D 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~---e 80 (534)
+.++|++.++.-.++++.+++-=++. +.++.+++|++..+ +||+.-=...+.....++++.|+.+++ .|+... .
T Consensus 213 ~~~~A~~~~~~L~~~~i~~iEeP~~~-~~~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit 290 (394)
T 3mqt_A 213 DWQKARWTFRQLEDIDLYFIEACLQH-DDLIGHQKLAAAIN-TRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNRCGGVT 290 (394)
T ss_dssp CHHHHHHHHHHTGGGCCSEEESCSCT-TCHHHHHHHHHHSS-SEEEECTTCCHHHHHHHHHHHHCCSEECCCTTTSSCHH
T ss_pred CHHHHHHHHHHHhhcCCeEEECCCCc-ccHHHHHHHHhhCC-CCEEeCCCcCCHHHHHHHHHcCCCCeEecCccccCCHH
Confidence 56777777765344666666654443 23667788877654 776543333445667788888766655 777653 4
Q ss_pred HHHHHHHHH
Q 043479 81 DLKNVWQYA 89 (534)
Q Consensus 81 eL~~aI~~a 89 (534)
+.+++...+
T Consensus 291 ~~~~ia~~A 299 (394)
T 3mqt_A 291 ELLRIMDIC 299 (394)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 376
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=25.09 E-value=2.9e+02 Score=27.74 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=44.8
Q ss_pred CHHHHHHHHHhcCCceEEEEeCC------CCCCC--HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcC-CcEE
Q 043479 5 RPVEALATVRIQRDIDLVVTDLH------MPEMN--GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASG-VAFY 72 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~------mPdmd--GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aG-A~dy 72 (534)
+..+..+.+++ ..+|.|-+... ++... -++++++|++.. .+|||......+.+.+.++++.| |+.+
T Consensus 230 ~~~~la~~L~~-~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~-~iPVi~~GgI~s~e~a~~~L~~G~aD~V 304 (340)
T 3gr7_A 230 DYVPYAKRMKE-QGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREA-DIPTGAVGLITSGWQAEEILQNGRADLV 304 (340)
T ss_dssp GHHHHHHHHHH-TTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHT-TCCEEEESSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHH-cCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHc-CCcEEeeCCCCCHHHHHHHHHCCCeeEE
Confidence 44555666665 55787665321 11112 367888998876 59998887777889999999999 6554
No 377
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=25.09 E-value=2.8e+02 Score=26.35 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCCCCC-------HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 6 PVEALATVRIQRDIDLVVTDLHMPEMN-------GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~mPdmd-------GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+.+.++.+.....+|+|++=..-|+.. .++-++++|+..++++ |.+.+--+.+.+..+.++||+.++.=
T Consensus 126 p~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 126 DVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLN-IQVDGGLNIETTEISASHGANIIVAG 201 (227)
T ss_dssp CGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCCHHHHHHHHHHTCCEEEES
T ss_pred cHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCe-EEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 344444443201489887766556543 3677788887765555 44566667888999999999998753
No 378
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=25.05 E-value=1.8e+02 Score=31.51 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=57.5
Q ss_pred eecCHHHHHHHHHhcCC---ceEEEEeCCCCC---------CCHHHHHHHHHhhC-----CCCcEEEEecCCCHHHHHHH
Q 043479 2 TVTRPVEALATVRIQRD---IDLVVTDLHMPE---------MNGIELQKEINEEF-----THLPVMVMSSDDRESVIMKA 64 (534)
Q Consensus 2 tass~~EALe~L~~~~~---pDLVLLDi~mPd---------mdGleLL~~Lr~~~-----p~ipVIVLSs~~d~~~~~~A 64 (534)
++.+.+|+.+..+. . +|.|.+-...|. .-|++.++++++.. .++||+.+-+- +.+.+.++
T Consensus 114 S~ht~eea~~A~~~--G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v 190 (540)
T 3nl6_A 114 SVGFPEEVDELSKM--GPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERV 190 (540)
T ss_dssp EECSHHHHHHHHHT--CC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHH
T ss_pred ECCCHHHHHHHHHc--CCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHH
Confidence 56788888877664 4 899998655442 23677787776642 46999988776 44555666
Q ss_pred HH--------cCCcEEE-----eCCCChHHHHHHHHHHHHH
Q 043479 65 LA--------SGVAFYI-----LKPLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 65 L~--------aGA~dyL-----~KP~s~eeL~~aI~~aL~~ 92 (534)
+. .|++++- .+.-++.+-.+.++.+++.
T Consensus 191 ~~~~~~~g~~~GadgvAVvsaI~~a~dp~~a~~~l~~~~~~ 231 (540)
T 3nl6_A 191 LYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDK 231 (540)
T ss_dssp HHHCBCTTSSCBCSCEEESHHHHTCTTHHHHHHHHHHHHHC
T ss_pred HHhhcccccccCceEEEEeHHHhcCCCHHHHHHHHHHHHHh
Confidence 66 6787764 3444555555555555543
No 379
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}
Probab=25.04 E-value=96 Score=31.48 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcE-EEeCCCC---hH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAF-YILKPLN---PD 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~d-yL~KP~s---~e 80 (534)
+.++|++.++.-.++++..++--++ .+-++.+++|++.. .+||+.--...+.....++++.|+.+ +..|+.. +.
T Consensus 202 ~~~~a~~~~~~l~~~~i~~iEqP~~-~~~~~~~~~l~~~~-~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit 279 (384)
T 2pgw_A 202 SVHDAINMCRKLEKYDIEFIEQPTV-SWSIPAMAHVREKV-GIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQ 279 (384)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSC-TTCHHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHH
T ss_pred CHHHHHHHHHHHHhcCCCEEeCCCC-hhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCCHH
Confidence 4566666554323355555554343 23467788888765 38877544445677888888888555 5578754 34
Q ss_pred HHHHHHHHH
Q 043479 81 DLKNVWQYA 89 (534)
Q Consensus 81 eL~~aI~~a 89 (534)
+.++++..+
T Consensus 280 ~~~~i~~~A 288 (384)
T 2pgw_A 280 PMMKAAAVA 288 (384)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 380
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=24.99 E-value=2.4e+02 Score=30.40 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCceEEEE-eCCCCC---CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHH-cCCcEEEeC-----
Q 043479 6 PVEALATVRIQRDIDLVVT-DLHMPE---MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALA-SGVAFYILK----- 75 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLL-Di~mPd---mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~-aGA~dyL~K----- 75 (534)
..|..+.+++ ..++.||+ |+.-.+ .-.++++++|++.. .+|||.-....+.+.+.++++ .|+++.+.-
T Consensus 454 ~~e~a~~~~~-~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~-~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 454 VWELTRACEA-LGAGEILLNCIDKDGSNSGYDLELIEHVKDAV-KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHH-TTCCEEEECCGGGTTTCSCCCHHHHHHHHHHC-SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHH-cCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhC-CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 3455555554 44665554 543222 12478999998764 599998777888899999987 899998653
Q ss_pred -CCChHHHHHH
Q 043479 76 -PLNPDDLKNV 85 (534)
Q Consensus 76 -P~s~eeL~~a 85 (534)
++...++++.
T Consensus 532 ~~~~~~e~~~~ 542 (555)
T 1jvn_A 532 GEFTVNDVKEY 542 (555)
T ss_dssp TSCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 6777777654
No 381
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=24.95 E-value=1.9e+02 Score=30.29 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=44.3
Q ss_pred HHHHHhcCCceEEEEeCCCCCC-CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 10 LATVRIQRDIDLVVTDLHMPEM-NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 10 Le~L~~~~~pDLVLLDi~mPdm-dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+++.+ ...|.|+++...... .-+++++++++..|.+||+ .-...+.+.+..++++||+.+..
T Consensus 238 a~~l~~-~G~d~ivi~~a~g~~~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~~~Gad~I~v 301 (491)
T 1zfj_A 238 AEALFE-AGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGVDVVKV 301 (491)
T ss_dssp HHHHHH-HTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHH-cCCCeEEEeeecCcchhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHHHcCCCEEEE
Confidence 333433 368999999743222 2356788888888788987 45555678888999999998754
No 382
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=24.93 E-value=3.4e+02 Score=23.60 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=42.0
Q ss_pred CceEEEEeCCCCCCC------------------HHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh
Q 043479 18 DIDLVVTDLHMPEMN------------------GIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP 79 (534)
Q Consensus 18 ~pDLVLLDi~mPdmd------------------GleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~ 79 (534)
.+.+|++|++--=.+ ..++++.+++. .++++++|+.........+-..|...|+....+.
T Consensus 7 ~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~--G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~k 84 (180)
T 1k1e_A 7 NIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDA--DIQVAVLSGRDSPILRRRIADLGIKLFFLGKLEK 84 (180)
T ss_dssp GCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHT--TCEEEEEESCCCHHHHHHHHHHTCCEEEESCSCH
T ss_pred CCeEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHHC--CCeEEEEeCCCcHHHHHHHHHcCCceeecCCCCc
Confidence 367899998632111 34677777764 4789999998877666666678998888654444
Q ss_pred HH
Q 043479 80 DD 81 (534)
Q Consensus 80 ee 81 (534)
.+
T Consensus 85 ~~ 86 (180)
T 1k1e_A 85 ET 86 (180)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 383
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=24.89 E-value=1.7e+02 Score=31.38 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
++.+++|++.. .+||++=-. ...+.+..+.++||+.+.+
T Consensus 332 ~~~i~~lr~~~-~~PvivKgv-~~~e~A~~a~~aGad~I~v 370 (511)
T 1kbi_A 332 WKDIEELKKKT-KLPIVIKGV-QRTEDVIKAAEIGVSGVVL 370 (511)
T ss_dssp HHHHHHHHHHC-SSCEEEEEE-CSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHh-CCcEEEEeC-CCHHHHHHHHHcCCCEEEE
Confidence 56788888876 488887522 2467788899999999887
No 384
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=24.85 E-value=2.2e+02 Score=28.39 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=43.1
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHh-hCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINE-EFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~-~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.+.+|+.+.++. ..|.|.+|- ++- +.++++.+ ..+.++| ..|+--+.+.+....+.|++.+-+
T Consensus 214 ev~tlee~~eA~~a--GaD~I~ld~----~~~-e~l~~~v~~~~~~~~I-~ASGGIt~~~i~~~a~~GvD~isv 279 (296)
T 1qap_A 214 EVENLDELDDALKA--GADIIMLDN----FNT-DQMREAVKRVNGQARL-EVSGNVTAETLREFAETGVDFISV 279 (296)
T ss_dssp EESSHHHHHHHHHT--TCSEEEESS----CCH-HHHHHHHHTTCTTCCE-EECCCSCHHHHHHHHHTTCSEEEC
T ss_pred EeCCHHHHHHHHHc--CCCEEEECC----CCH-HHHHHHHHHhCCCCeE-EEECCCCHHHHHHHHHcCCCEEEE
Confidence 46677787777754 589999985 333 33444443 3334554 456666888899999999976643
No 385
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Probab=24.83 E-value=1.3e+02 Score=31.00 Aligned_cols=82 Identities=9% Similarity=0.016 Sum_probs=48.4
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEE-EeCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFY-ILKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dy-L~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++.+++-=++. +-++.+++|++..+ +||+.-=...+.....++++.|+.++ ..|+...--|.
T Consensus 222 ~~~~A~~~~~~L~~~~i~~iEeP~~~-~~~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d~~~~GGit 299 (400)
T 4dxk_A 222 QLLPAMQIAKALTPYQTFWHEDPIKM-DSLSSLTRYAAVSP-APISASETLGSRWAFRDLLETGAAGVVMLDISWCGGLS 299 (400)
T ss_dssp CHHHHHHHHHHTGGGCCSEEECCBCT-TSGGGHHHHHHHCS-SCEEECTTCCHHHHHHHHHHTTCCCEEEECTTTTTHHH
T ss_pred CHHHHHHHHHHHhhcCCCEEEcCCCc-ccHHHHHHHHHhCC-CCEEecCCcCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 56677766654334566666643442 23455667776543 77664333344566778888886555 48887655555
Q ss_pred HHHHH
Q 043479 84 NVWQY 88 (534)
Q Consensus 84 ~aI~~ 88 (534)
.+++-
T Consensus 300 ~~~ki 304 (400)
T 4dxk_A 300 EARKI 304 (400)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 386
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A
Probab=24.80 E-value=1.2e+02 Score=31.66 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++..++-=++. +-++.+++|++..+ +||+.-=...+.....++++.|+.+++ .|+...--|.
T Consensus 239 ~~~~A~~~~~~L~~~~i~~iEqP~~~-~d~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit 316 (425)
T 3vcn_A 239 TPIEAARLGKDLEPYRLFWLEDSVPA-ENQAGFRLIRQHTT-TPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLHAGGIT 316 (425)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSCC-SSTTHHHHHHHHCC-SCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCh-hhHHHHHHHHhcCC-CCEEeCCCcCCHHHHHHHHHcCCCCeEecChhhcCCHH
Confidence 45566655543233555555543432 22444566666543 787654344456677888888866665 7776655555
Q ss_pred HHHHHH
Q 043479 84 NVWQYA 89 (534)
Q Consensus 84 ~aI~~a 89 (534)
.+++-+
T Consensus 317 ~~~~ia 322 (425)
T 3vcn_A 317 NLKKIA 322 (425)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 387
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=24.64 E-value=2.2e+02 Score=29.14 Aligned_cols=41 Identities=12% Similarity=-0.050 Sum_probs=32.8
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 35 ELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 35 eLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+.+.++++..+++|||.-.+-.+...+.+++.+||+.+..-
T Consensus 256 ~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~ig 296 (368)
T 3vkj_A 256 ASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMA 296 (368)
T ss_dssp HHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 44556666666789998888888999999999999998653
No 388
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=24.61 E-value=1.5e+02 Score=30.54 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCceEEEEeCCC------C----CC-CHHHHHHHHHhhCCCCcEEEEecC--CCHHHHHHHHHcCCcEE
Q 043479 6 PVEALATVRIQRDIDLVVTDLHM------P----EM-NGIELQKEINEEFTHLPVMVMSSD--DRESVIMKALASGVAFY 72 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~m------P----dm-dGleLL~~Lr~~~p~ipVIVLSs~--~d~~~~~~AL~aGA~dy 72 (534)
.+++.+.++. ...|.+.+++.. | +. +.++.+++|++.. .+|||+=-.. ...+.+..+.++||+.+
T Consensus 157 ~e~~~~~ve~-~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~-~~PVivK~vg~g~s~e~A~~l~~aGad~I 234 (365)
T 3sr7_A 157 YQAGLQAVRD-LQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKL-QLPFILKEVGFGMDVKTIQTAIDLGVKTV 234 (365)
T ss_dssp HHHHHHHHHH-HCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHC-CSCEEEEECSSCCCHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHh-cCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhh-CCCEEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 4566666654 456777777654 2 23 2337888998876 4898887321 46678888999999998
Q ss_pred EeC
Q 043479 73 ILK 75 (534)
Q Consensus 73 L~K 75 (534)
.+-
T Consensus 235 ~V~ 237 (365)
T 3sr7_A 235 DIS 237 (365)
T ss_dssp ECC
T ss_pred EEe
Confidence 763
No 389
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=24.50 E-value=1.7e+02 Score=28.23 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=33.5
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
.++++++++.. ++||++=.+-.+.+.+.+++..||++++.=
T Consensus 194 ~~~i~~lr~~~-~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhcc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 68888988765 689887666666888888899999999875
No 390
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=24.42 E-value=2.3e+02 Score=28.34 Aligned_cols=55 Identities=9% Similarity=0.101 Sum_probs=38.9
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 19 IDLVVTDLHMPE-MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 19 pDLVLLDi~mPd-mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+|+|.+|+...+ ...++.+++|++..+.++|+ .....+.+.+.++.++||+.++.
T Consensus 121 ~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi-~G~v~s~e~A~~a~~aGad~Ivv 176 (336)
T 1ypf_A 121 PEYITIDIAHGHSNAVINMIQHIKKHLPESFVI-AGNVGTPEAVRELENAGADATKV 176 (336)
T ss_dssp CSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEE-ECCcCCHHHHHHHHHcCCCEEEE
Confidence 888888763222 13467888998887655554 33245678889999999999988
No 391
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.39 E-value=2e+02 Score=21.61 Aligned_cols=53 Identities=17% Similarity=0.371 Sum_probs=38.8
Q ss_pred CccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 043479 161 KVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKRVAEQGA 222 (534)
Q Consensus 161 rv~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr~a~~~~ 222 (534)
+-.||.+=...+++++..+|. -=.+|++.++ -|...++.| |+.+++.......
T Consensus 9 k~~WT~eED~~L~~~~~~~g~---~W~~Ia~~~g---Rt~~qcr~R---w~~~l~~~~~~~~ 61 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPT---QWRTIAPIIG---RTAAQCLEH---YEFLLDKAAQRDS 61 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT---CHHHHHHHHS---SCHHHHHHH---HHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHcCC---CHHHHhcccC---cCHHHHHHH---HHHHhChHhcCCC
Confidence 346999988999999999884 2477888554 888888887 5555666665543
No 392
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=24.37 E-value=1.8e+02 Score=29.65 Aligned_cols=84 Identities=13% Similarity=-0.012 Sum_probs=51.3
Q ss_pred CHHHHHHHHHhcCC--ceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcE-EEeCCCChHH
Q 043479 5 RPVEALATVRIQRD--IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAF-YILKPLNPDD 81 (534)
Q Consensus 5 s~~EALe~L~~~~~--pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~d-yL~KP~s~ee 81 (534)
+.++|+++++.-.+ +++.+++--++. +-++.+++|++....+||+.-=.. +.....++++.|+.+ +..| =.+.+
T Consensus 202 ~~~~a~~~~~~l~~~g~~i~~iEqP~~~-~~~~~~~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik-GGit~ 278 (389)
T 2oz8_A 202 TSKEALTKLVAIREAGHDLLWVEDPILR-HDHDGLRTLRHAVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH-GQVTD 278 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCCSEEESCBCT-TCHHHHHHHHHHCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC-SCHHH
T ss_pred CHHHHHHHHHHHHhcCCCceEEeCCCCC-cCHHHHHHHHhhCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC-cCHHH
Confidence 45666665543223 566666544443 346777888776524776654444 677788888888555 5588 66666
Q ss_pred HHHHHHHHHH
Q 043479 82 LKNVWQYAMT 91 (534)
Q Consensus 82 L~~aI~~aL~ 91 (534)
.++++..+..
T Consensus 279 a~~i~~~A~~ 288 (389)
T 2oz8_A 279 VMRIGWLAAE 288 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 393
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.02 E-value=2.3e+02 Score=27.39 Aligned_cols=73 Identities=7% Similarity=0.141 Sum_probs=44.5
Q ss_pred CceEEEEeCCCCCCCH--HH-HHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 043479 18 DIDLVVTDLHMPEMNG--IE-LQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYAMTYK 93 (534)
Q Consensus 18 ~pDLVLLDi~mPdmdG--le-LL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL~~k 93 (534)
.+.|||+|=-.. ++. .+ +++.+.+..+.+.+|++|..... +...+..-+.-+-.+|.+.+++...++.++...
T Consensus 134 ~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~--l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (354)
T 1sxj_E 134 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP--IIAPIKSQCLLIRCPAPSDSEISTILSDVVTNE 209 (354)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS--SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHHHHHhhceEEecCCcCHHHHHHHHHHHHHHc
Confidence 577999984222 443 22 34444433334555555544332 334555666777789999999999998887543
No 394
>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}
Probab=24.00 E-value=1.3e+02 Score=30.67 Aligned_cols=80 Identities=4% Similarity=-0.050 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHHH
Q 043479 6 PVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLKN 84 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~~ 84 (534)
.++|++.++.-.++++..++-=++. +.++.+++|++..+ +||+.-=...+.....++++.|+.+++ .|+...--|..
T Consensus 207 ~~~A~~~~~~l~~~~i~~iEqP~~~-~~~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~ 284 (374)
T 3sjn_A 207 CGHSAMMAKRLEEFNLNWIEEPVLA-DSLISYEKLSRQVS-QKIAGGESLTTRYEFQEFITKSNADIVQPDITRCGGITE 284 (374)
T ss_dssp HHHHHHHHHHSGGGCCSEEECSSCT-TCHHHHHHHHHHCS-SEEEECTTCCHHHHHHHHHHHHCCSEECCBTTTSSHHHH
T ss_pred HHHHHHHHHHhhhcCceEEECCCCc-ccHHHHHHHHhhCC-CCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 6778777765344666666644443 34677888887643 776543333345567778877765555 78766544444
Q ss_pred HHH
Q 043479 85 VWQ 87 (534)
Q Consensus 85 aI~ 87 (534)
+++
T Consensus 285 ~~~ 287 (374)
T 3sjn_A 285 MKK 287 (374)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 395
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}
Probab=23.94 E-value=1.4e+02 Score=30.78 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++..++-=++. +.++.+++|++.. .+||+.-=...+.....++++.|+.+++ .|+...--|.
T Consensus 213 ~~~~A~~~~~~L~~~~i~~iEeP~~~-~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit 290 (412)
T 4e4u_A 213 VPSSAIRLAKRLEKYDPLWFEEPVPP-GQEEAIAQVAKHT-SIPIATGERLTTKYEFHKLLQAGGASILQLNVARVGGLL 290 (412)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSCS-SCHHHHHHHHHTC-SSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTSHH
T ss_pred CHHHHHHHHHHhhhcCCcEEECCCCh-hhHHHHHHHHhhC-CCCEEecCccCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 45666665544234566566544443 2367777887754 3776643333345667788888876665 7776543333
Q ss_pred H
Q 043479 84 N 84 (534)
Q Consensus 84 ~ 84 (534)
.
T Consensus 291 ~ 291 (412)
T 4e4u_A 291 E 291 (412)
T ss_dssp H
T ss_pred H
Confidence 3
No 396
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Probab=23.93 E-value=1.1e+02 Score=31.67 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++..++-=++. +-++.+++|++..+ +||+.-=...+.....++++.|+.+++ .|+...--|.
T Consensus 238 ~~~~A~~~~~~L~~~~i~~iEqP~~~-~d~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit 315 (424)
T 3v3w_A 238 TPIEAARLGKALEPYHLFWMEDAVPA-ENQESFKLIRQHTT-TPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAGGIS 315 (424)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSCC-SSTTHHHHHHHHCC-SCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCh-HhHHHHHHHHhhCC-CCEEEccCcCCHHHHHHHHHcCCCCeEeecchhcCCHH
Confidence 45556555443233455555543332 22445566666543 787654334456677788888866665 7876655555
Q ss_pred HHHHH
Q 043479 84 NVWQY 88 (534)
Q Consensus 84 ~aI~~ 88 (534)
.+++-
T Consensus 316 ~~~~i 320 (424)
T 3v3w_A 316 QMRRI 320 (424)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 397
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=23.93 E-value=85 Score=33.01 Aligned_cols=59 Identities=8% Similarity=0.078 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCC-CCcEEEEecCCCHHHHHHHHHcCCcEEEe------C-CCChHHHHHHHHHHHHH
Q 043479 34 IELQKEINEEFT-HLPVMVMSSDDRESVIMKALASGVAFYIL------K-PLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 34 leLL~~Lr~~~p-~ipVIVLSs~~d~~~~~~AL~aGA~dyL~------K-P~s~eeL~~aI~~aL~~ 92 (534)
+++++++++... ++|||...+-.+.+.+.+++.+||+.+.. . |.-..++.+.+.+.+..
T Consensus 332 l~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l~~ 398 (415)
T 3i65_A 332 TKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQ 398 (415)
T ss_dssp HHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 477888877653 69999999999999999999999987653 2 44445555555555544
No 398
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=23.86 E-value=1.9e+02 Score=29.68 Aligned_cols=69 Identities=10% Similarity=0.010 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCC--------------------CCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHM--------------------PEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKA 64 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~m--------------------PdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~A 64 (534)
+.++|....+. .+|.|.++-.- -+....+.+..++.....+|||.-.+-.+...+.++
T Consensus 219 s~e~A~~l~~a--Gad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~Ka 296 (365)
T 3sr7_A 219 DVKTIQTAIDL--GVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDIIKA 296 (365)
T ss_dssp CHHHHHHHHHH--TCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHHHHH
T ss_pred CHHHHHHHHHc--CCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHH
Confidence 55666665553 57888775330 012234566666655557899988888889999999
Q ss_pred HHcCCcEEEeC
Q 043479 65 LASGVAFYILK 75 (534)
Q Consensus 65 L~aGA~dyL~K 75 (534)
+.+||+.+..-
T Consensus 297 LalGAdaV~ig 307 (365)
T 3sr7_A 297 LVLGAKAVGLS 307 (365)
T ss_dssp HHHTCSEEEES
T ss_pred HHcCCCEEEEC
Confidence 99999998653
No 399
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}
Probab=23.86 E-value=1.4e+02 Score=30.56 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++.+++-=++. +.++.+++|++..+ +||+.==...+.....++++.|+.+++ .|+...--|.
T Consensus 231 ~~~~A~~~~~~l~~~~i~~iEqP~~~-~d~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit 308 (390)
T 3ugv_A 231 DMAEAMHRTRQIDDLGLEWIEEPVVY-DNFDGYAQLRHDLK-TPLMIGENFYGPREMHQALQAGACDLVMPDFMRIGGVS 308 (390)
T ss_dssp CHHHHHHHHHHHTTSCCSEEECCSCT-TCHHHHHHHHHHCS-SCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHH
T ss_pred CHHHHHHHHHHHHhhCCCEEECCCCc-ccHHHHHHHHHhcC-CCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 46677766654345666666644443 24667778877654 787654344456677888888876665 6664433344
Q ss_pred HHH
Q 043479 84 NVW 86 (534)
Q Consensus 84 ~aI 86 (534)
.++
T Consensus 309 ~~~ 311 (390)
T 3ugv_A 309 GWM 311 (390)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 400
>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A
Probab=23.71 E-value=1.2e+02 Score=31.05 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=53.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCC---hH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLN---PD 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s---~e 80 (534)
+.++|++.++.-.++++..++==++..+.++.+++|++..+ +||..==+..+.....++++.|+.+++ +|+.. +.
T Consensus 221 ~~~~A~~~~~~l~~~~~~~iEeP~~~~~d~~~~~~l~~~~~-ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit 299 (388)
T 4h83_A 221 KPAVAVDLSRRIADLNIRWFEEPVEWHNDKRSMRDVRYQGS-VPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPT 299 (388)
T ss_dssp CHHHHHHHHHHTTTSCCCCEESCBCSTTHHHHHHHHHHHSS-SCEEECTTCSSHHHHHHHHHHTCCSEECCCGGGTTCHH
T ss_pred CHHHHHHHHHHhhhcCcceeecCcccccchHHHHHHHhhcC-CCccCCccccChHhHHHHHHcCCCCeEeecceeCCCHH
Confidence 67788887765456777777654554567788888887654 776432222356677888899988887 55533 34
Q ss_pred HHHHHHHH
Q 043479 81 DLKNVWQY 88 (534)
Q Consensus 81 eL~~aI~~ 88 (534)
+.+++...
T Consensus 300 ~~~kia~~ 307 (388)
T 4h83_A 300 AWLRTAAI 307 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 401
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1
Probab=23.64 E-value=96 Score=31.38 Aligned_cols=83 Identities=14% Similarity=0.061 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCC-HHHHHHHHHcCCcE-EEeCCCC---h
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDR-ESVIMKALASGVAF-YILKPLN---P 79 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d-~~~~~~AL~aGA~d-yL~KP~s---~ 79 (534)
+.++|++.++.-.++++..++--++. +.++.+++|++.. .+||+.-=...+ .....++++.++.+ +..|+.. +
T Consensus 212 ~~~~a~~~~~~l~~~~i~~iE~P~~~-~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi 289 (382)
T 1rvk_A 212 SRTDALALGRGLEKLGFDWIEEPMDE-QSLSSYKWLSDNL-DIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGI 289 (382)
T ss_dssp CHHHHHHHHHHHHTTTCSEEECCSCT-TCHHHHHHHHHHC-SSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTSH
T ss_pred CHHHHHHHHHHHHhcCCCEEeCCCCh-hhHHHHHHHHhhC-CCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhcCCH
Confidence 45566655543223455555543442 3467777887765 378765444456 67788888888655 4578754 3
Q ss_pred HHHHHHHHHH
Q 043479 80 DDLKNVWQYA 89 (534)
Q Consensus 80 eeL~~aI~~a 89 (534)
.+.++++..+
T Consensus 290 t~~~~i~~~A 299 (382)
T 1rvk_A 290 TPALKTMHLA 299 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 402
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.61 E-value=1.3e+02 Score=24.55 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=26.2
Q ss_pred HHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043479 173 LQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKY 210 (534)
Q Consensus 173 leaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKy 210 (534)
.++++.|....+..++|++.++ +++.+|..||.+.
T Consensus 20 ~~IL~lL~~~g~sa~eLAk~Lg---iSk~aVr~~L~~L 54 (82)
T 1oyi_A 20 CEAIKTIGIEGATAAQLTRQLN---MEKREVNKALYDL 54 (82)
T ss_dssp HHHHHHHSSSTEEHHHHHHHSS---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHC---cCHHHHHHHHHHH
Confidence 3444444333377899999999 9999999998765
No 403
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=23.49 E-value=1.1e+02 Score=31.15 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=43.6
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh--HHHHHHHHHHHHH
Q 043479 17 RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP--DDLKNVWQYAMTY 92 (534)
Q Consensus 17 ~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~--eeL~~aI~~aL~~ 92 (534)
.++|+|+||+- ..++...+++.|... | .+.+...+..+...|+.|=+.+ .++.+.+.++-..
T Consensus 159 ~~~D~ivcDig--eSs~~~~ve~~Rtl~----v--------Lel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~ 222 (321)
T 3lkz_A 159 ECCDTLLCDIG--ESSSSAEVEEHRTIR----V--------LEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRR 222 (321)
T ss_dssp CCCSEEEECCC--CCCSCHHHHHHHHHH----H--------HHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECc--cCCCChhhhhhHHHH----H--------HHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHH
Confidence 46899999987 666666666655432 1 2566778888877898897777 6776777766544
No 404
>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A
Probab=23.32 E-value=1.3e+02 Score=31.30 Aligned_cols=79 Identities=5% Similarity=-0.108 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++..++-=++. +-++.+++|++.. .+||+.-=...+.....++++.|+.+++ +|+...--|.
T Consensus 242 ~~~~Ai~~~~~Le~~~i~~iEeP~~~-~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik~~~~GGit 319 (412)
T 3stp_A 242 NLDYAKRMLPKLAPYEPRWLEEPVIA-DDVAGYAELNAMN-IVPISGGEHEFSVIGCAELINRKAVSVLQYDTNRVGGIT 319 (412)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSCT-TCHHHHHHHHHTC-SSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCc-ccHHHHHHHHhCC-CCCEEeCCCCCCHHHHHHHHHcCCCCEEecChhhcCCHH
Confidence 45666665544234566556544442 2466777887754 3787654344466778888998877766 6654433344
Q ss_pred HH
Q 043479 84 NV 85 (534)
Q Consensus 84 ~a 85 (534)
.+
T Consensus 320 ~a 321 (412)
T 3stp_A 320 AA 321 (412)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 405
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=23.09 E-value=2.4e+02 Score=25.84 Aligned_cols=21 Identities=0% Similarity=0.140 Sum_probs=14.6
Q ss_pred EEeCCCChHHHHHHHHHHHHH
Q 043479 72 YILKPLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 72 yL~KP~s~eeL~~aI~~aL~~ 92 (534)
+..++.+.++....++..+..
T Consensus 172 i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 172 VFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp EECCSCCHHHHHHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHHh
Confidence 345566788888888777654
No 406
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=23.09 E-value=2.8e+02 Score=27.45 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+..+.++.+.+ ..+|+|.+....| .++++.+++. .++|++.. .+.+.+.++.+.|++.++.-
T Consensus 90 ~~~~~~~~~~~-~g~d~V~l~~g~p----~~~~~~l~~~--g~~v~~~v--~s~~~a~~a~~~GaD~i~v~ 151 (326)
T 3bo9_A 90 WADDLVKVCIE-EKVPVVTFGAGNP----TKYIRELKEN--GTKVIPVV--ASDSLARMVERAGADAVIAE 151 (326)
T ss_dssp THHHHHHHHHH-TTCSEEEEESSCC----HHHHHHHHHT--TCEEEEEE--SSHHHHHHHHHTTCSCEEEE
T ss_pred CHHHHHHHHHH-CCCCEEEECCCCc----HHHHHHHHHc--CCcEEEEc--CCHHHHHHHHHcCCCEEEEE
Confidence 34566777766 6789999877655 5778888764 46666533 45667778889999988873
No 407
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=23.07 E-value=2.2e+02 Score=32.97 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=44.5
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe------CCC-ChHHHHHHHHHHHHH
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL------KPL-NPDDLKNVWQYAMTY 92 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~------KP~-s~eeL~~aI~~aL~~ 92 (534)
+++++++++..+++|||...+-.+.+.+.+++.+||+.+.. +|. ..+++...++..+..
T Consensus 775 ~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~~l~~~l~~ 840 (1025)
T 1gte_A 775 LRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYL 840 (1025)
T ss_dssp HHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEEEEeeccccCCccHHHHHHHHHHHHHHH
Confidence 46788888877679999999999999999999999999854 243 345555555555443
No 408
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.00 E-value=2e+02 Score=21.97 Aligned_cols=45 Identities=9% Similarity=0.197 Sum_probs=34.7
Q ss_pred CccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHH
Q 043479 161 KVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQK 209 (534)
Q Consensus 161 rv~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQK 209 (534)
+-.|+.+=-.++++++..+|..+ =+.|++.|. +-|...++.+...
T Consensus 9 ~~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~l~--~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 9 GGVWRNTEDEILKAAVMKYGKNQ--WSRIASLLH--RKSAKQCKARWYE 53 (70)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSSC--HHHHHHHST--TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC--HHHHHHHhc--CCCHHHHHHHHHH
Confidence 44699999999999999998433 488999885 6778777766443
No 409
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=22.98 E-value=67 Score=32.05 Aligned_cols=68 Identities=19% Similarity=0.133 Sum_probs=43.3
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI 73 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL 73 (534)
++.+.+|+.+.++. ..|+|++|-.-| .+--+.++.++...+.+++ ..|+--+.+.+.+..+.|++.+.
T Consensus 199 EV~tleea~eA~~a--GaD~I~LDn~~~-e~l~~av~~l~~~~~~v~i-eASGGIt~eni~~~a~tGVD~Is 266 (285)
T 1o4u_A 199 EVENLEDALRAVEA--GADIVMLDNLSP-EEVKDISRRIKDINPNVIV-EVSGGITEENVSLYDFETVDVIS 266 (285)
T ss_dssp EESSHHHHHHHHHT--TCSEEEEESCCH-HHHHHHHHHHHHHCTTSEE-EEEECCCTTTGGGGCCTTCCEEE
T ss_pred EeCCHHHHHHHHHc--CCCEEEECCCCH-HHHHHHHHHhhccCCCceE-EEECCCCHHHHHHHHHcCCCEEE
Confidence 56788888888774 589999997322 1112334444444455654 45665666767777788888764
No 410
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=22.91 E-value=1.4e+02 Score=30.92 Aligned_cols=82 Identities=9% Similarity=0.020 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++..++-=++. +.++.+++|++.. .+||+.-=...+.....++++.|+.+++ .|+...-=|.
T Consensus 190 ~~~~A~~~~~~L~~~~i~~iEeP~~~-~d~~~~~~l~~~~-~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~~GGit 267 (405)
T 3rr1_A 190 SAPMAKVLIKELEPYRPLFIEEPVLA-EQAETYARLAAHT-HLPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAGGIT 267 (405)
T ss_dssp CHHHHHHHHHHHGGGCCSCEECSSCC-SSTHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHHCCCSEECCBTTTTTHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCc-ccHHHHHHHHhcC-CCCEEecCCcCCHHHHHHHHHHhCCCeEEEChhhcCCHH
Confidence 34555554433223444444433332 2355666676543 3776644344466777888888866665 7776654555
Q ss_pred HHHHH
Q 043479 84 NVWQY 88 (534)
Q Consensus 84 ~aI~~ 88 (534)
.+++-
T Consensus 268 ea~ki 272 (405)
T 3rr1_A 268 ECVKI 272 (405)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 411
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=22.85 E-value=1.1e+02 Score=31.11 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=47.9
Q ss_pred cCHHHHHHHHHhc--CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcE
Q 043479 4 TRPVEALATVRIQ--RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAF 71 (534)
Q Consensus 4 ss~~EALe~L~~~--~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~d 71 (534)
.+..||++.+... +.-|+|++- |.+.-+++++.+++.+ ++|+.+.-...+-..+..|.+.|..+
T Consensus 223 aN~~EAlre~~~Di~EGAD~vMVK---Pal~YLDIi~~vk~~~-~~P~aaYqVSGEYAMikaAa~~GwiD 288 (323)
T 1l6s_A 223 MNRREAIRESLLDEAQGADCLMVK---PAGAYLDIVRELRERT-ELPIGAYQVSGEYAMIKFAALAGAID 288 (323)
T ss_dssp TCHHHHHHHHHHHHHTTCSBEEEE---SCTTCHHHHHHHHTTC-SSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHhhHHhCCceEEEe---cCcchhHHHHHHHHhc-CCCeEEEEcCcHHHHHHHHHHcCCcc
Confidence 4677888776542 568999987 6666799999999887 69999887766666666677777543
No 412
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.60 E-value=3e+02 Score=22.57 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=35.0
Q ss_pred CcEEEEecCCCH----HHHHHHHHcCCcEEEeCCCChHHHHHHHHHHHHH
Q 043479 47 LPVMVMSSDDRE----SVIMKALASGVAFYILKPLNPDDLKNVWQYAMTY 92 (534)
Q Consensus 47 ipVIVLSs~~d~----~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL~~ 92 (534)
.|++++...... +...+|.+.|+..-+.|..++++|...++..+..
T Consensus 52 kplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflkt 101 (112)
T 2lnd_A 52 KPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKT 101 (112)
T ss_dssp SCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHh
Confidence 566666554443 3455678899998899999999999999988743
No 413
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Probab=22.59 E-value=97 Score=30.93 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhcCCceEE--EEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcE-EEeCCCChHH
Q 043479 5 RPVEALATVRIQRDIDLV--VTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAF-YILKPLNPDD 81 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLV--LLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~d-yL~KP~s~ee 81 (534)
+.++|++.++.-.++++. +++--++. +-++.+++|++..+ +||+.-=...+.....++++.|+.+ +..|+.. --
T Consensus 194 ~~~~a~~~~~~l~~~~i~~~~iE~P~~~-~~~~~~~~l~~~~~-ipia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GG 270 (345)
T 2zad_A 194 TQKEAVEFARAVYQKGIDIAVYEQPVRR-EDIEGLKFVRFHSP-FPVAADESARTKFDVMRLVKEEAVDYVNIKLMK-SG 270 (345)
T ss_dssp CHHHHHHHHHHHHHTTCCCSEEECCSCT-TCHHHHHHHHHHSS-SCEEESTTCCSHHHHHHHHHHTCCSEEEECHHH-HH
T ss_pred CHHHHHHHHHHHHhcCCCeeeeeCCCCc-ccHHHHHHHHHhCC-CCEEEeCCcCCHHHHHHHHHhCCCCEEEEeccc-cc
Confidence 456666655432234555 66644443 44777888887653 7866543334667778888888555 5578765 55
Q ss_pred HHHHHHH
Q 043479 82 LKNVWQY 88 (534)
Q Consensus 82 L~~aI~~ 88 (534)
|.++++-
T Consensus 271 it~~~~i 277 (345)
T 2zad_A 271 ISDALAI 277 (345)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 414
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=22.57 E-value=88 Score=31.51 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCC--CCCC---HHHHHHHHHhhCCCCcEEEEecCC------------C-----HHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHM--PEMN---GIELQKEINEEFTHLPVMVMSSDD------------R-----ESVIM 62 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~m--Pdmd---GleLL~~Lr~~~p~ipVIVLSs~~------------d-----~~~~~ 62 (534)
+...|++.+.+....+|+||.... +..+ -+..+..+++ + ++||++-+++. . .....
T Consensus 170 ei~~ave~i~~~Gn~~iiL~erg~~y~~~~~~vdl~~i~~lk~-~-~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~ 247 (298)
T 3fs2_A 170 DMKNVLAKITESGNPNVLATERGVSFGYNTLVSDMRALPIMAG-L-GAPVIFDATHSVQQPGGQGGSTGGQREFVETLAR 247 (298)
T ss_dssp GHHHHHHHHHTTTCCCEEEEECCEECSSSCEECCTTHHHHHHT-T-TSCEEEEHHHHTCCCC--------CGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccCHHHHHHHHH-c-CCcEEEcCCCccccCCcccCCCCCchhhHHHHHH
Confidence 446678888764567899998643 1111 1233445565 4 79998855553 2 34566
Q ss_pred HHHHcCCcEE-EeCCCC
Q 043479 63 KALASGVAFY-ILKPLN 78 (534)
Q Consensus 63 ~AL~aGA~dy-L~KP~s 78 (534)
.|+.+||++. |.|-++
T Consensus 248 AAvAlGAdGl~IE~H~t 264 (298)
T 3fs2_A 248 AAVAVGVAGFFIETHED 264 (298)
T ss_dssp HHHHHCCSEEEEEEESS
T ss_pred HHHHcCCCEEEEEecCC
Confidence 7889999964 555443
No 415
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=22.50 E-value=1.4e+02 Score=27.91 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=48.1
Q ss_pred cCHHHHHHHHHhcCCce-EEEEeCCCC---CCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 4 TRPVEALATVRIQRDID-LVVTDLHMP---EMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 4 ss~~EALe~L~~~~~pD-LVLLDi~mP---dmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+..+..+.+.+ ...| |.+.|.... ...-++++++++ . ..+||++.....+.+.+.++++.||+.++.
T Consensus 30 ~~~~~~a~~~~~-~Gad~i~v~d~~~~~~~~~~~~~~i~~i~-~-~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~l 101 (241)
T 1qo2_A 30 KDPVELVEKLIE-EGFTLIHVVDLSNAIENSGENLPVLEKLS-E-FAEHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_dssp SCHHHHHHHHHH-TTCCCEEEEEHHHHHHCCCTTHHHHHHGG-G-GGGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred cCHHHHHHHHHH-cCCCEEEEecccccccCCchhHHHHHHHH-h-cCCcEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 456677776665 4565 455664321 123367777777 4 359999999998999999999999998875
No 416
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Probab=22.45 E-value=2.1e+02 Score=28.97 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=48.4
Q ss_pred CHHHHHHHHHhc--CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHH
Q 043479 5 RPVEALATVRIQ--RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDD 81 (534)
Q Consensus 5 s~~EALe~L~~~--~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~ee 81 (534)
+.++|++.++.- ..+++..++-=++. +.++.+++|++..+ +||..==...+.....++++.++.+++ .||.. --
T Consensus 199 ~~~~A~~~~~~L~~~~~~i~~iEeP~~~-~d~~~~~~l~~~~~-ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~-GG 275 (365)
T 3ik4_A 199 DVERALAFCAACKAESIPMVLFEQPLPR-EDWAGMAQVTAQSG-FAVAADESARSAHDVLRIAREGTASVINIKLMK-AG 275 (365)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCSCT-TCHHHHHHHHHHSS-SCEEESTTCSSHHHHHHHHHHTCCSEEEECHHH-HC
T ss_pred CHHHHHHHHHHHhhCCCCceEEECCCCc-ccHHHHHHHHhhCC-CCEEECCCCCCHHHHHHHHHhCCCCEEEEcCCc-cC
Confidence 567777766553 56788888754443 34677778877654 776542222345567777887766554 77754 33
Q ss_pred HHHHH
Q 043479 82 LKNVW 86 (534)
Q Consensus 82 L~~aI 86 (534)
|..++
T Consensus 276 it~~~ 280 (365)
T 3ik4_A 276 VAEGL 280 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 417
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=22.43 E-value=79 Score=33.00 Aligned_cols=46 Identities=24% Similarity=0.245 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHh-cc---CCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 043479 168 LHNRFLQAIRHI-GL---EKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216 (534)
Q Consensus 168 Lh~RFleaLe~L-Gl---ekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr 216 (534)
|.++..+++... ++ +...-++|++.|+ +|+++|+.++.+-+..||+
T Consensus 361 L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lg---iS~erVrqi~~rAl~kLR~ 410 (423)
T 2a6h_F 361 LSEREAMVLKLRKGLIDGREHTLEEVGAFFG---VTRERIRQIENKALRKLKY 410 (423)
T ss_dssp SCHHHHHHHHHHHHTTCC-----CHHHHSSS---SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHh
Confidence 778888888774 43 4556789999999 9999999999998888884
No 418
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=22.22 E-value=3.5e+02 Score=24.96 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhcCCceEEEEeC---CC-CCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 5 RPVEALATVRIQRDIDLVVTDL---HM-PEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi---~m-PdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
++.+..+.+.+ ...|.|-++. .. +...- ++++++++.. .+|+++--.-.+.+.+..++++||+.++.-
T Consensus 32 d~~~~a~~~~~-~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~-~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg 103 (244)
T 2y88_A 32 SAVDAALGWQR-DGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVNVG 103 (244)
T ss_dssp EHHHHHHHHHH-TTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHH-cCCCEEEEEcCcccccCCChH-HHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 55566666655 4566655542 11 22333 8888888765 589888767777788999999999988764
No 419
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=22.17 E-value=97 Score=30.09 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 043479 167 SLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRIFLKR 216 (534)
Q Consensus 167 eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl~lkr 216 (534)
.|+++..+++...-.+....++|++.|+ ++..+|++++.+-+..++.
T Consensus 111 ~Lp~~~R~v~~L~~~eg~s~~EIA~~lg---is~~tVks~l~rA~~~Lr~ 157 (286)
T 3n0r_A 111 RIAPRSRQAFLLTALEGFTPTEAAQILD---CDFGEVERLIGDAQAEIDA 157 (286)
T ss_dssp HHSCHHHHHHHHHHTTCCCHHHHHHHHT---CCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHeeEEEEEeeCCCCHHHHHHHhC---cCHHHHHHHHHHHHhhhhc
Confidence 4788888888887777777899999999 8899999999887765554
No 420
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=22.10 E-value=3.3e+02 Score=25.25 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhcCCceEEEEeC---C-CCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 5 RPVEALATVRIQRDIDLVVTDL---H-MPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi---~-mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+..+..+.+.+ ...|.|-++. . -+...- ++++.+++.. .+|+++--.-.+.+.+..++++||+.++.-
T Consensus 33 d~~~~a~~~~~-~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~-~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg 104 (244)
T 1vzw_A 33 SPLEAALAWQR-SGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLG 104 (244)
T ss_dssp CHHHHHHHHHH-TTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHH-cCCCEEEEecCchhhcCCChH-HHHHHHHHhc-CCcEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 56666666665 4567665542 1 122333 7888888765 589988767777788889999999988754
No 421
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=22.03 E-value=1.7e+02 Score=27.97 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=49.6
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCCCCC--CHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHMPEM--NGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~mPdm--dGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+.++.|+++.++. .+|+|=+ .|.. -|.++++.|+.-.|++|++. ++--+.+.+.+.+++|+...+.
T Consensus 119 ~~TptE~~~A~~~--Gad~vK~---FPa~~~gG~~~lkal~~p~p~i~~~p-tGGI~~~N~~~~l~aGa~~~vg 186 (217)
T 3lab_A 119 VATASEVMIAAQA--GITQLKC---FPASAIGGAKLLKAWSGPFPDIQFCP-TGGISKDNYKEYLGLPNVICAG 186 (217)
T ss_dssp ECSHHHHHHHHHT--TCCEEEE---TTTTTTTHHHHHHHHHTTCTTCEEEE-BSSCCTTTHHHHHHSTTBCCEE
T ss_pred CCCHHHHHHHHHc--CCCEEEE---CccccccCHHHHHHHHhhhcCceEEE-eCCCCHHHHHHHHHCCCEEEEE
Confidence 4688999988874 5888754 4643 37999999999888888774 4545577788999999766543
No 422
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=22.02 E-value=45 Score=31.45 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=39.4
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHHHH
Q 043479 17 RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYAMT 91 (534)
Q Consensus 17 ~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~aL~ 91 (534)
..+|+||+|+.+++..+. ..+|.++...... ....+...++.||+...++...+.++..
T Consensus 47 ~~~~~ii~d~~~~~~~~~------------~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 47 TPEDVLITDEVVSKKWQG------------RAVVTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp CTTCEEEEESSCSCCCCS------------SEEEEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred CcCcEEEEcCCCcccccc------------ceEEEEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 358999999999875431 2356666543211 0123456899999999999888887763
No 423
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=21.99 E-value=84 Score=32.31 Aligned_cols=85 Identities=19% Similarity=0.186 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCceEEEEe--C-CCCC--CC--HHHHHHHHHhhCCCCcEEEEecCCC------HHHHHHHHHcCCcEE
Q 043479 6 PVEALATVRIQRDIDLVVTD--L-HMPE--MN--GIELQKEINEEFTHLPVMVMSSDDR------ESVIMKALASGVAFY 72 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLD--i-~mPd--md--GleLL~~Lr~~~p~ipVIVLSs~~d------~~~~~~AL~aGA~dy 72 (534)
-..|++.+......+++||+ . ..|. .. .+..+..+++.+ ++||++.+++.. ......|+.+||++.
T Consensus 229 i~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~lk~~~-~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl 307 (350)
T 1vr6_A 229 FLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKES-HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGI 307 (350)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHB-SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHhh-CCCEEEeCCCCCcccchHHHHHHHHHHhCCCEE
Confidence 34566766654557999985 2 1221 11 222344555543 488888777653 345667788999976
Q ss_pred E-eCC-------------CChHHHHHHHHHHHH
Q 043479 73 I-LKP-------------LNPDDLKNVWQYAMT 91 (534)
Q Consensus 73 L-~KP-------------~s~eeL~~aI~~aL~ 91 (534)
+ .|- +++++|...++.+..
T Consensus 308 ~IE~H~~pd~al~D~~~sL~p~e~~~lv~~ir~ 340 (350)
T 1vr6_A 308 IVEVHPEPEKALSDGKQSLDFELFKELVQEMKK 340 (350)
T ss_dssp EEEBCSCGGGCSSCGGGCBCHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCCchhhcCCHHHHHHHHHHHHH
Confidence 5 443 356677766666543
No 424
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Probab=21.96 E-value=1.8e+02 Score=29.47 Aligned_cols=83 Identities=12% Similarity=0.014 Sum_probs=50.1
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcC----Cc-EEEeCCCCh
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASG----VA-FYILKPLNP 79 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aG----A~-dyL~KP~s~ 79 (534)
+.++|+++++.-.++++..++--++. +.++.+++|++.. .+||+.-=...+.....++++.| +. .+..|+...
T Consensus 222 ~~~~a~~~~~~l~~~~i~~iEqP~~~-~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~~~~ 299 (392)
T 1tzz_A 222 NLETGIAYAKMLRDYPLFWYEEVGDP-LDYALQAALAEFY-PGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALS 299 (392)
T ss_dssp CHHHHHHHHHHHTTSCCSEEECCSCT-TCHHHHHHHTTTC-CSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTT
T ss_pred CHHHHHHHHHHHHHcCCCeecCCCCh-hhHHHHHHHHhhC-CCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECcccc
Confidence 45677766654344566566544443 3467777887654 37766544444667788888888 54 455888654
Q ss_pred ---HHHHHHHHHH
Q 043479 80 ---DDLKNVWQYA 89 (534)
Q Consensus 80 ---eeL~~aI~~a 89 (534)
.+.++++..+
T Consensus 300 GGit~~~~i~~~A 312 (392)
T 1tzz_A 300 YGLCEYQRTLEVL 312 (392)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444
No 425
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=21.94 E-value=1.1e+02 Score=24.40 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=27.8
Q ss_pred HHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 043479 174 QAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212 (534)
Q Consensus 174 eaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKyRl 212 (534)
.++..+..+.....+|++.++ ++..+|..||.+.+.
T Consensus 27 ~Il~~L~~~~~~~~ela~~l~---is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 27 QILCMLHNQELSVGELCAKLQ---LSQSALSQHLAWLRR 62 (98)
T ss_dssp HHHHHTTTSCEEHHHHHHHHT---CCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence 556666445667899999997 899999999988643
No 426
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=21.92 E-value=3e+02 Score=26.73 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=40.0
Q ss_pred CHHHHHHHHHhc--CCceEEEEeC-CCCC-----CCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEE
Q 043479 5 RPVEALATVRIQ--RDIDLVVTDL-HMPE-----MNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFY 72 (534)
Q Consensus 5 s~~EALe~L~~~--~~pDLVLLDi-~mPd-----mdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dy 72 (534)
+.++.+++++.- ..++.|.+-. ..+. .+.+++++.+++. +.+++.++. .....+.+++++|++.+
T Consensus 24 ~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~-~~~~v~~l~--~n~~~i~~a~~~G~~~V 96 (295)
T 1ydn_A 24 PTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRA-DGVRYSVLV--PNMKGYEAAAAAHADEI 96 (295)
T ss_dssp CHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCC-SSSEEEEEC--SSHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhC-CCCEEEEEe--CCHHHHHHHHHCCCCEE
Confidence 344444443321 4466665532 1122 2577888888654 678887776 45777889999998765
No 427
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=21.84 E-value=1.1e+02 Score=30.84 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=49.9
Q ss_pred CHHHHHHHHHhc-CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEE-EeCCCC---h
Q 043479 5 RPVEALATVRIQ-RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFY-ILKPLN---P 79 (534)
Q Consensus 5 s~~EALe~L~~~-~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dy-L~KP~s---~ 79 (534)
+.++|++.++.- .++++ .++--++ .++.+++|++.. .+||+.-=...+.....++++.|+.++ ..|+.. +
T Consensus 202 ~~~~a~~~~~~l~~~~~i-~iE~P~~---~~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi 276 (371)
T 2ps2_A 202 SVETALRLLRLLPHGLDF-ALEAPCA---TWRECISLRRKT-DIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGL 276 (371)
T ss_dssp CHHHHHHHHHHSCTTCCC-EEECCBS---SHHHHHHHHTTC-CSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHHHHTSH
T ss_pred CHHHHHHHHHHHHhhcCC-cCcCCcC---CHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHhCCCCEEEechhhcCCH
Confidence 567777777664 45677 6654333 467777887654 378765444456777888888886555 588754 4
Q ss_pred HHHHHHHHHH
Q 043479 80 DDLKNVWQYA 89 (534)
Q Consensus 80 eeL~~aI~~a 89 (534)
.+.++++..+
T Consensus 277 t~~~~i~~~A 286 (371)
T 2ps2_A 277 TRGRRQRDIC 286 (371)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 428
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=21.80 E-value=5e+02 Score=26.47 Aligned_cols=39 Identities=10% Similarity=0.028 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 34 IELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 34 leLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
++.+++|++.. ++||++=.. ...+.+..+.++|++.+++
T Consensus 206 w~~i~~lr~~~-~~PvivK~v-~~~e~A~~a~~~GaD~I~v 244 (352)
T 3sgz_A 206 WNDLSLLQSIT-RLPIILKGI-LTKEDAELAMKHNVQGIVV 244 (352)
T ss_dssp HHHHHHHHHHC-CSCEEEEEE-CSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhc-CCCEEEEec-CcHHHHHHHHHcCCCEEEE
Confidence 36788888776 488876543 4567788999999999987
No 429
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=21.72 E-value=4.1e+02 Score=25.05 Aligned_cols=62 Identities=10% Similarity=0.012 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCceEEEEeCCCC--CCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 7 VEALATVRIQRDIDLVVTDLHMP--EMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 7 ~EALe~L~~~~~pDLVLLDi~mP--dmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
+++.+.+. ...|+|++|...- ...-.++++.+++. -++++....+.+.+.++.+.|++.+..
T Consensus 92 ~~i~~~~~--~Gad~V~l~~~~~~~p~~l~~~i~~~~~~----g~~v~~~v~t~eea~~a~~~Gad~Ig~ 155 (232)
T 3igs_A 92 DDVDALAQ--AGAAIIAVDGTARQRPVAVEALLARIHHH----HLLTMADCSSVDDGLACQRLGADIIGT 155 (232)
T ss_dssp HHHHHHHH--HTCSEEEEECCSSCCSSCHHHHHHHHHHT----TCEEEEECCSHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHH--cCCCEEEECccccCCHHHHHHHHHHHHHC----CCEEEEeCCCHHHHHHHHhCCCCEEEE
Confidence 34444443 3578888887541 23445677777653 233444556777788888899886643
No 430
>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}
Probab=21.65 E-value=1.1e+02 Score=31.76 Aligned_cols=85 Identities=9% Similarity=-0.002 Sum_probs=46.8
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCC---hH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLN---PD 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s---~e 80 (534)
+.++|++.++.-.++++.+++--++. +.++.+++|++....+||+.-=...+.....++++.|+.+++ .|+.. +.
T Consensus 241 ~~~eai~~~~~L~~~~i~~iEqP~~~-~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 319 (428)
T 3bjs_A 241 TMADARRVLPVLAEIQAGWLEEPFAC-NDFASYREVAKITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPDLSKCGGIT 319 (428)
T ss_dssp CHHHHHHHHHHHHHTTCSCEECCSCT-TCHHHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTCCEEEECCBTTTSSCHH
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCc-cCHHHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHH
Confidence 34555554433122344444433332 346666777654322676554344467778888989977776 77765 45
Q ss_pred HHHHHHHHHH
Q 043479 81 DLKNVWQYAM 90 (534)
Q Consensus 81 eL~~aI~~aL 90 (534)
+.++++..+.
T Consensus 320 ea~~ia~~A~ 329 (428)
T 3bjs_A 320 EGIRIAAMAS 329 (428)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 431
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=21.57 E-value=3e+02 Score=29.39 Aligned_cols=69 Identities=23% Similarity=0.179 Sum_probs=49.2
Q ss_pred cCHHHHHHHHHhcCCceEEEEeCCCC-----CCCHHHHHHHHHhhC------CCCcEEEEecCCCHHHHHHHHHcCCcEE
Q 043479 4 TRPVEALATVRIQRDIDLVVTDLHMP-----EMNGIELQKEINEEF------THLPVMVMSSDDRESVIMKALASGVAFY 72 (534)
Q Consensus 4 ss~~EALe~L~~~~~pDLVLLDi~mP-----dmdGleLL~~Lr~~~------p~ipVIVLSs~~d~~~~~~AL~aGA~dy 72 (534)
.+.++|....+ ..+|.|++.-+-. ....++++.++++.. ..+|||+-.+-.+...+.+++.+||+.+
T Consensus 352 ~~~e~A~~a~~--aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV 429 (511)
T 1kbi_A 352 QRTEDVIKAAE--IGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGV 429 (511)
T ss_dssp CSHHHHHHHHH--TTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred CCHHHHHHHHH--cCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEE
Confidence 35666666554 4589888853311 123467777776543 4699999999999999999999999998
Q ss_pred Ee
Q 043479 73 IL 74 (534)
Q Consensus 73 L~ 74 (534)
..
T Consensus 430 ~i 431 (511)
T 1kbi_A 430 GL 431 (511)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 432
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=21.48 E-value=96 Score=30.04 Aligned_cols=70 Identities=7% Similarity=-0.033 Sum_probs=45.7
Q ss_pred eecCHHHHHHHHHhcCCceEEEEeCCC-CC-CCHHHHHHHHHhhCC----CCcEEEEecCCCHHHHHHHHHcCCcEEEe
Q 043479 2 TVTRPVEALATVRIQRDIDLVVTDLHM-PE-MNGIELQKEINEEFT----HLPVMVMSSDDRESVIMKALASGVAFYIL 74 (534)
Q Consensus 2 tass~~EALe~L~~~~~pDLVLLDi~m-Pd-mdGleLL~~Lr~~~p----~ipVIVLSs~~d~~~~~~AL~aGA~dyL~ 74 (534)
.+.+.+|+...+.. ..|+|=+.... .+ ...++.+++|....| ++++|..++-.+.+.+.++.+ |++++++
T Consensus 160 ev~~~~E~~~a~~~--gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 160 EVHTERELEIALEA--GAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp EECSHHHHHHHHHH--TCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEE
T ss_pred EECCHHHHHHHHHc--CCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEE
Confidence 46777787666554 35776553221 11 122455555554433 578888888888999999999 9999976
No 433
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A
Probab=21.46 E-value=1.5e+02 Score=29.66 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=50.0
Q ss_pred CHHHHHHHHHhcCC--ceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCc-EEEeCCCC---
Q 043479 5 RPVEALATVRIQRD--IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVA-FYILKPLN--- 78 (534)
Q Consensus 5 s~~EALe~L~~~~~--pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~-dyL~KP~s--- 78 (534)
+.++|++.++.-.+ +++..++--++. +.++.+++|++..+ +||+.-=...+.....++++.++. .+..|+..
T Consensus 197 ~~~~a~~~~~~l~~~~~~i~~iEqP~~~-~d~~~~~~l~~~~~-ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 274 (366)
T 1tkk_A 197 RPKEAVTAIRKMEDAGLGIELVEQPVHK-DDLAGLKKVTDATD-TPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGG 274 (366)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCSCT-TCHHHHHHHHHHCS-SCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTS
T ss_pred CHHHHHHHHHHHhhcCCCceEEECCCCc-ccHHHHHHHHhhCC-CCEEEcCCCCCHHHHHHHHHhCCCCEEEeehhhhcC
Confidence 45677766654233 678777744443 34677788877653 787644334456777788887754 45588754
Q ss_pred hHHHHHHHHHH
Q 043479 79 PDDLKNVWQYA 89 (534)
Q Consensus 79 ~eeL~~aI~~a 89 (534)
+.+.++++..+
T Consensus 275 it~~~~i~~~A 285 (366)
T 1tkk_A 275 ISGAEKINAMA 285 (366)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 434
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=21.39 E-value=1.7e+02 Score=29.16 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCC-CcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHHHHHH
Q 043479 35 ELQKEINEEFTH-LPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNVWQYA 89 (534)
Q Consensus 35 eLL~~Lr~~~p~-ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~aI~~a 89 (534)
+.++.+++..+. .+|++-+. +.+.+.++++.|++.+..-++++++|..+++.+
T Consensus 185 ~ai~~~r~~~~~~~~i~vev~--tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l 238 (299)
T 2jbm_A 185 KAVRAARQAADFALKVEVECS--SLQEAVQAAEAGADLVLLDNFKPEELHPTATVL 238 (299)
T ss_dssp HHHHHHHHHHTTTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcCCeEEEecC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 456666666654 56666443 346677889999999988889999999887754
No 435
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A
Probab=21.31 E-value=1.9e+02 Score=29.17 Aligned_cols=83 Identities=8% Similarity=0.055 Sum_probs=48.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCC-cEEEeCCCC---hH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGV-AFYILKPLN---PD 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA-~dyL~KP~s---~e 80 (534)
+.++|++.++.-.++++.+++-=++. +-++.+++|++..+ +||+.==...+.....++++.++ +.+..|+.. ..
T Consensus 200 ~~~~a~~~~~~l~~~~i~~iEqP~~~-~~~~~~~~l~~~~~-iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit 277 (370)
T 1chr_A 200 DEQVASVYIPELEALGVELIEQPVGR-ENTQALRRLSDNNR-VAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVS 277 (370)
T ss_dssp CTTHHHHHTHHHHTTTEEEEECCSCT-TCHHHHHHHHHHSC-SEEEESSSCCSHHHHHHHHTTTSCSEEEECTTTSCSHH
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCc-ccHHHHHHHHhhCC-CCEEeCCCcCCHHHHHHHHHcCCCCEEEECccccCCHH
Confidence 34556655443234677777644443 33667778877654 77654333345667778888875 555688865 45
Q ss_pred HHHHHHHHH
Q 043479 81 DLKNVWQYA 89 (534)
Q Consensus 81 eL~~aI~~a 89 (534)
+.+++...+
T Consensus 278 ~~~~i~~~A 286 (370)
T 1chr_A 278 ATQKIAAVA 286 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444444
No 436
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=21.22 E-value=1.5e+02 Score=30.92 Aligned_cols=79 Identities=9% Similarity=0.080 Sum_probs=46.9
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++.+++-=++. +-++.+++|++... +||+.-=...+.....++++.|+.+++ +|+...--|.
T Consensus 215 t~~~A~~~~~~Le~~~i~~iEeP~~~-~~~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit 292 (433)
T 3rcy_A 215 TTAGAIRLGQAIEPYSPLWYEEPVPP-DNVGAMAQVARAVR-IPVATGERLTTKAEFAPVLREGAAAILQPALGRAGGIW 292 (433)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSCT-TCHHHHHHHHHHSS-SCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHH
T ss_pred CHHHHHHHHHHhhhcCCCEEECCCCh-hhHHHHHHHHhccC-CCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHH
Confidence 45666665543234566666644443 23677778877653 787654444567778889999877776 5554332333
Q ss_pred HH
Q 043479 84 NV 85 (534)
Q Consensus 84 ~a 85 (534)
.+
T Consensus 293 ~~ 294 (433)
T 3rcy_A 293 EM 294 (433)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 437
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=21.02 E-value=2.2e+02 Score=30.12 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=48.1
Q ss_pred ecCHHHHHHHHHhcCCceEEEEeCCC--------------CCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcC
Q 043479 3 VTRPVEALATVRIQRDIDLVVTDLHM--------------PEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASG 68 (534)
Q Consensus 3 ass~~EALe~L~~~~~pDLVLLDi~m--------------PdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aG 68 (534)
+.+.++|..+.+. ..|.|.+-... |....+.+++++++.. ++|||...+-.+...+.+++.+|
T Consensus 304 v~t~~~a~~l~~a--Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~-~ipVia~GGI~~~~di~kala~G 380 (514)
T 1jcn_A 304 VVTAAQAKNLIDA--GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF-GVPIIADGGIQTVGHVVKALALG 380 (514)
T ss_dssp ECSHHHHHHHHHH--TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTT
T ss_pred cchHHHHHHHHHc--CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHcC
Confidence 4566677666654 47887774321 1122355666666543 59999888888889999999999
Q ss_pred CcEEE-eCCC
Q 043479 69 VAFYI-LKPL 77 (534)
Q Consensus 69 A~dyL-~KP~ 77 (534)
|+... -+++
T Consensus 381 Ad~V~iG~~~ 390 (514)
T 1jcn_A 381 ASTVMMGSLL 390 (514)
T ss_dssp CSEEEESTTT
T ss_pred CCeeeECHHH
Confidence 99875 3443
No 438
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}
Probab=20.95 E-value=1.6e+02 Score=30.30 Aligned_cols=83 Identities=16% Similarity=0.065 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCCh---H
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNP---D 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~---e 80 (534)
+.++|++.++.-.++++..++-=++. +.++.+++|++..+ +||+.-=...+.....++++.|+.+++ .|+... .
T Consensus 220 ~~~~A~~~~~~l~~~~i~~iEeP~~~-~~~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit 297 (404)
T 4e5t_A 220 TVSGAKRLARRLEAYDPLWFEEPIPP-EKPEDMAEVARYTS-IPVATGERLCTKYEFSRVLETGAASILQMNLGRVGGLL 297 (404)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSCT-TCHHHHHHHHHHCS-SCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTSSCHH
T ss_pred CHHHHHHHHHHHhhcCCcEEECCCCc-ccHHHHHHHHhhCC-CCEEeCCCcCCHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 45666665544234556566543442 23677778877653 786643333445667788888876666 776553 4
Q ss_pred HHHHHHHHH
Q 043479 81 DLKNVWQYA 89 (534)
Q Consensus 81 eL~~aI~~a 89 (534)
+.+++...+
T Consensus 298 ~~~~ia~~A 306 (404)
T 4e5t_A 298 EAKKIAAMA 306 (404)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 439
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=20.93 E-value=1.9e+02 Score=29.42 Aligned_cols=72 Identities=10% Similarity=0.047 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhcCC--ceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEE-EeCCCC
Q 043479 5 RPVEALATVRIQRD--IDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFY-ILKPLN 78 (534)
Q Consensus 5 s~~EALe~L~~~~~--pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dy-L~KP~s 78 (534)
+.++|+++++.-.+ +++..++-=++. +.++.+++|++..+ +||..==...+.....++++.|+.++ ..|+..
T Consensus 198 ~~~~A~~~~~~l~~~~~~l~~iEeP~~~-~d~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~ 272 (379)
T 3r0u_A 198 NLAQTKQFIEEINKYSLNVEIIEQPVKY-YDIKAMAEITKFSN-IPVVADESVFDAKDAERVIDEQACNMINIKLAK 272 (379)
T ss_dssp CHHHHHHHHHHHHTSCCCEEEEECCSCT-TCHHHHHHHHHHCS-SCEEESTTCSSHHHHHHHHHTTCCSEEEECHHH
T ss_pred CHHHHHHHHHHHhhcCCCcEEEECCCCc-ccHHHHHHHHhcCC-CCEEeCCccCCHHHHHHHHHcCCCCEEEECccc
Confidence 56777777654334 678787754443 34677888887654 77654333345667778888886555 577744
No 440
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=20.86 E-value=1.5e+02 Score=26.86 Aligned_cols=75 Identities=16% Similarity=0.295 Sum_probs=45.4
Q ss_pred HHHHHhcCCceEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEEEecCCC---HHHHHHHHHcCCcEEEeCCCChHHHHHH
Q 043479 10 LATVRIQRDIDLVVTDLHMPE-MNGIELQKEINEEFTHLPVMVMSSDDR---ESVIMKALASGVAFYILKPLNPDDLKNV 85 (534)
Q Consensus 10 Le~L~~~~~pDLVLLDi~mPd-mdGleLL~~Lr~~~p~ipVIVLSs~~d---~~~~~~AL~aGA~dyL~KP~s~eeL~~a 85 (534)
++.++. .|+||.++.-|+ ..++|+--... ...||+++..... ...+.+....+ ..|..+++..++|..+
T Consensus 63 ~~~i~~---aD~vvA~l~~~d~Gt~~EiG~A~a---lgkPV~~l~~~~~~~~ls~mi~G~~~~-~~~~~~~Y~~~el~~i 135 (152)
T 4fyk_A 63 LNWLQQ---ADVVVAEVTQPSLGVGYELGRAVA---LGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETM 135 (152)
T ss_dssp HHHHHH---CSEEEEECSSCCHHHHHHHHHHHH---TTCCEEEEECGGGSCCCCHHHHHHCCS-SSEEEEECCTTCHHHH
T ss_pred HHHHHH---CCEEEEeCCCCCCCHHHHHHHHHH---cCCeEEEEEeCCccchhHHHHcCCCCC-CeEEEEEecHHHHHHH
Confidence 344544 699999888665 34555544443 3578988776432 22333333322 3466777777888888
Q ss_pred HHHHHH
Q 043479 86 WQYAMT 91 (534)
Q Consensus 86 I~~aL~ 91 (534)
|.+.+.
T Consensus 136 l~~f~~ 141 (152)
T 4fyk_A 136 LDRYFE 141 (152)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 887763
No 441
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=20.76 E-value=1.3e+02 Score=29.81 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=43.3
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCCh--HHHHHHHHHHHH
Q 043479 17 RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNP--DDLKNVWQYAMT 91 (534)
Q Consensus 17 ~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~--eeL~~aI~~aL~ 91 (534)
.++|+||+|+- |. +|...+++.|... -.+.+.+.++-|...|+.|=|.. +++.+.+..+.+
T Consensus 138 ~~~DvVLSDMA-Pn-SG~~~vD~~Rs~~------------aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~ 200 (269)
T 2px2_A 138 EISDTLLCDIG-ES-SPSAEIEEQRTLR------------ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQR 200 (269)
T ss_dssp CCCSEEEECCC-CC-CSCHHHHHHHHHH------------HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEeCCC-CC-CCccHHHHHHHHH------------HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHH
Confidence 46899999974 44 7877888777643 12555677887877899998887 777665555443
No 442
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=20.75 E-value=1.6e+02 Score=21.08 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=33.9
Q ss_pred cCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHHHHH
Q 043479 163 AWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHLQKY 210 (534)
Q Consensus 163 ~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHLQKy 210 (534)
.|+.+=...+++++..+|... =..|++.| ++-|...++.+...|
T Consensus 5 ~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 5 PWTKEEDQRLIKLVQKYGPKR--WSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp SCCHHHHHHHHHHHHHHCTTC--HHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCcCh--HHHHHHHc--CCCCHHHHHHHHHHH
Confidence 599999999999999998422 47788887 478888887775543
No 443
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=20.67 E-value=1.5e+02 Score=30.32 Aligned_cols=76 Identities=8% Similarity=-0.004 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEEeCCCChHHHHHH
Q 043479 6 PVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKNV 85 (534)
Q Consensus 6 ~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL~KP~s~eeL~~a 85 (534)
.+|..+++.. .|+.++=... +.-|+-+++.+. ..+|||. +..... +.+..|..+++..|-++++|.++
T Consensus 305 ~~~l~~~~~~---adv~v~pS~~-E~~g~~~lEAmA---~G~PVV~-~~~g~~----e~v~~~~~G~lv~~~d~~~la~a 372 (413)
T 2x0d_A 305 LEDYADLLKR---SSIGISLMIS-PHPSYPPLEMAH---FGLRVIT-NKYENK----DLSNWHSNIVSLEQLNPENIAET 372 (413)
T ss_dssp HHHHHHHHHH---CCEEECCCSS-SSCCSHHHHHHH---TTCEEEE-ECBTTB----CGGGTBTTEEEESSCSHHHHHHH
T ss_pred HHHHHHHHHh---CCEEEEecCC-CCCCcHHHHHHh---CCCcEEE-eCCCcc----hhhhcCCCEEEeCCCCHHHHHHH
Confidence 4555566654 5777763221 223555666654 3588887 543322 33456788999999999999999
Q ss_pred HHHHHHHh
Q 043479 86 WQYAMTYK 93 (534)
Q Consensus 86 I~~aL~~k 93 (534)
|.+++...
T Consensus 373 i~~ll~~~ 380 (413)
T 2x0d_A 373 LVELCMSF 380 (413)
T ss_dssp HHHHHHHT
T ss_pred HHHHHcCH
Confidence 99998643
No 444
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*
Probab=20.61 E-value=1.2e+02 Score=31.31 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++..++-=++. +-++.+++|++..+ +||+.-=...+.....++++.|+.+++ .|+...--|.
T Consensus 232 ~~~~A~~~~~~L~~~~i~~iEqP~~~-~d~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~l~~~a~d~v~~k~~~~GGit 309 (418)
T 3r4e_A 232 TPQEAANLGKMLEPYQLFWLEDCTPA-ENQEAFRLVRQHTV-TPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAGGLT 309 (418)
T ss_dssp CHHHHHHHHHHHGGGCCSEEESCSCC-SSGGGGHHHHHHCC-SCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHHhhCCCEEECCCCc-cCHHHHHHHHhcCC-CCEEEcCCcCCHHHHHHHHHcCCCCeEecCccccCCHH
Confidence 34555554433223444444433332 22344556655543 776644333456677788888866665 7876654555
Q ss_pred HHHHH
Q 043479 84 NVWQY 88 (534)
Q Consensus 84 ~aI~~ 88 (534)
.+++-
T Consensus 310 ~~~~i 314 (418)
T 3r4e_A 310 HLRRI 314 (418)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 445
>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*
Probab=20.52 E-value=1.1e+02 Score=31.45 Aligned_cols=83 Identities=8% Similarity=0.060 Sum_probs=48.3
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-eCCCC---hH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYI-LKPLN---PD 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dyL-~KP~s---~e 80 (534)
+.++|++.++.-.++++.+++--++. +.++.+++|++..+ +||+.-=...+.....++++.|+.+++ .|+.. +.
T Consensus 232 ~~~~ai~~~~~l~~~~i~~iEqP~~~-~d~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 309 (398)
T 2pp0_A 232 DRETAIRMGRKMEQFNLIWIEEPLDA-YDIEGHAQLAAALD-TPIATGEMLTSFREHEQLILGNASDFVQPDAPRVGGIS 309 (398)
T ss_dssp CHHHHHHHHHHHGGGTCSCEECCSCT-TCHHHHHHHHHHCS-SCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHH
T ss_pred CHHHHHHHHHHHHHcCCceeeCCCCh-hhHHHHHHHHhhCC-CCEEecCCcCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 45666666544233455555543332 34677777877653 787654444467788888888866655 67643 34
Q ss_pred HHHHHHHHH
Q 043479 81 DLKNVWQYA 89 (534)
Q Consensus 81 eL~~aI~~a 89 (534)
+.++++..+
T Consensus 310 e~~~i~~~A 318 (398)
T 2pp0_A 310 PFLKIMDLA 318 (398)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 446
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=20.50 E-value=2.4e+02 Score=25.59 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhc--CCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEE-EecCCCHHHHHHHHHcCCcEEEeC
Q 043479 5 RPVEALATVRIQ--RDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMV-MSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 5 s~~EALe~L~~~--~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIV-LSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+.+++++.++.. ...|.|-++.. +.+.++.++.+++..+ +++++ .....+.+.+..++++||+.+...
T Consensus 17 d~~~~~~~~~~~~~~G~~~i~l~~~--~~~~~~~i~~i~~~~~-~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~ 87 (212)
T 2v82_A 17 TPDEALAHVGAVIDAGFDAVEIPLN--SPQWEQSIPAIVDAYG-DKALIGAGTVLKPEQVDALARMGCQLIVTP 87 (212)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEETT--STTHHHHHHHHHHHHT-TTSEEEEECCCSHHHHHHHHHTTCCEEECS
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCC--ChhHHHHHHHHHHhCC-CCeEEEeccccCHHHHHHHHHcCCCEEEeC
Confidence 445554444321 35788877654 3455777777776544 55554 223335667888999999988743
No 447
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=20.48 E-value=67 Score=25.95 Aligned_cols=38 Identities=8% Similarity=0.242 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHH-HHHHHHHHH
Q 043479 168 LHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRE-NVASHLQKY 210 (534)
Q Consensus 168 Lh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~-tVaSHLQKy 210 (534)
..++.++.+..-| ....+.|++.++ +|.. .|..||++.
T Consensus 12 ~~~~IL~~Lk~~g--~~ta~eiA~~Lg---it~~~aVr~hL~~L 50 (79)
T 1xmk_A 12 IKEKICDYLFNVS--DSSALNLAKNIG---LTKARDINAVLIDM 50 (79)
T ss_dssp HHHHHHHHHHHTC--CEEHHHHHHHHC---GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CcCHHHHHHHcC---CCcHHHHHHHHHHH
Confidence 3445555555555 566799999999 9998 999999875
No 448
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=20.44 E-value=4.7e+02 Score=25.68 Aligned_cols=73 Identities=10% Similarity=0.066 Sum_probs=49.1
Q ss_pred CeecCHHHHHHHHHhcCCceEEEEeC-CCCCC-CHHHHHHHHHhhCCC-CcEEEEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 1 VTVTRPVEALATVRIQRDIDLVVTDL-HMPEM-NGIELQKEINEEFTH-LPVMVMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 1 vtass~~EALe~L~~~~~pDLVLLDi-~mPdm-dGleLL~~Lr~~~p~-ipVIVLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
+.+.+.+|+-..+.. ..++|=+.- ++... -.++...+|....|. +.+|.-|+-.+.+.+.+....|+++||.-
T Consensus 158 vEVh~~~El~rAl~~--~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 158 ILINDENDLDIALRI--GARFIGIMSRDFETGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp EEESSHHHHHHHHHT--TCSEEEECSBCTTTCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEEC
T ss_pred HhcchHHHHHHHhcC--CCcEEEEeCCCccccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 356788887666653 577775532 22221 135566667666553 55566678889999999999999999975
No 449
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=20.34 E-value=92 Score=30.68 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhCCCCcEE--EEecCCCHHHHHHHHHcCCcEEEeC
Q 043479 33 GIELQKEINEEFTHLPVM--VMSSDDRESVIMKALASGVAFYILK 75 (534)
Q Consensus 33 GleLL~~Lr~~~p~ipVI--VLSs~~d~~~~~~AL~aGA~dyL~K 75 (534)
.+++++++++.. .+||| ...+-.+.+.+.+++.+||++++.=
T Consensus 195 ~~~~i~~i~~~~-~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vG 238 (305)
T 2nv1_A 195 PYELLLQIKKDG-KLPVVNFAAGGVATPADAALMMQLGADGVFVG 238 (305)
T ss_dssp CHHHHHHHHHHT-SCSSCEEBCSCCCSHHHHHHHHHTTCSCEEEC
T ss_pred cHHHHHHHHHhc-CCCEEEEeccCCCCHHHHHHHHHcCCCEEEEc
Confidence 467788887653 58887 5555557888889999999998654
No 450
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B
Probab=20.29 E-value=1.4e+02 Score=30.09 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCC-cEEEeCCCC---hH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGV-AFYILKPLN---PD 80 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA-~dyL~KP~s---~e 80 (534)
+.++|++.++.-. +++ .++--++ .++.+++|++.. .+||+.-=...+.....++++.++ +.+..|+.. +.
T Consensus 202 ~~~~a~~~~~~l~-~~i-~iEqP~~---d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~ 275 (378)
T 2qdd_A 202 TPAIAVEVLNSVR-ARD-WIEQPCQ---TLDQCAHVARRV-ANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLT 275 (378)
T ss_dssp CHHHHHHHHTSCC-CCC-EEECCSS---SHHHHHHHHTTC-CSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHH
T ss_pred CHHHHHHHHHHhC-CCc-EEEcCCC---CHHHHHHHHHhC-CCCEEECCCcCCHHHHHHHHHhCCCCEEEecccccCCHH
Confidence 5677887776534 667 6654344 467777887654 478765434445677788887775 455688754 44
Q ss_pred HHHHHHHHH
Q 043479 81 DLKNVWQYA 89 (534)
Q Consensus 81 eL~~aI~~a 89 (534)
+.++++..+
T Consensus 276 ~~~~i~~~A 284 (378)
T 2qdd_A 276 RARQIRDFG 284 (378)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 451
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*
Probab=20.27 E-value=1.4e+02 Score=30.18 Aligned_cols=78 Identities=15% Similarity=0.276 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCCcEE-EeCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFY-ILKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA~dy-L~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++..++-=++. +.++.+++|++..+ +||+.-=...+.....++++.|+.++ ..|+... =|.
T Consensus 197 ~~~~a~~~~~~l~~~~i~~iEqP~~~-~d~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~-Git 273 (367)
T 3dg3_A 197 SAAESLRAMREMADLDLLFAEELCPA-DDVLSRRRLVGQLD-MPFIADESVPTPADVTREVLGGSATAISIKTART-GFT 273 (367)
T ss_dssp CHHHHHHHHHHTTTSCCSCEESCSCT-TSHHHHHHHHHHCS-SCEEECTTCSSHHHHHHHHHHTSCSEEEECHHHH-TTH
T ss_pred CHHHHHHHHHHHHHhCCCEEECCCCc-ccHHHHHHHHHhCC-CCEEecCCcCCHHHHHHHHHcCCCCEEEeehhhh-hHH
Confidence 56677776655344566566543332 34677778877654 78765444446677778888885554 5777544 344
Q ss_pred HH
Q 043479 84 NV 85 (534)
Q Consensus 84 ~a 85 (534)
.+
T Consensus 274 ~~ 275 (367)
T 3dg3_A 274 GS 275 (367)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 452
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=20.23 E-value=1.5e+02 Score=30.08 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=42.7
Q ss_pred CHHHHHHHHHhcCCceEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEecCCCHHHHHHHHHcCC-cEEEeCCCChHHHH
Q 043479 5 RPVEALATVRIQRDIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGV-AFYILKPLNPDDLK 83 (534)
Q Consensus 5 s~~EALe~L~~~~~pDLVLLDi~mPdmdGleLL~~Lr~~~p~ipVIVLSs~~d~~~~~~AL~aGA-~dyL~KP~s~eeL~ 83 (534)
+.++|++.++.-.++++.+++-=++. +-++.+++|++..+ +||+.-=...+.....++++.|+ +.+..|+...--|.
T Consensus 206 ~~~~A~~~~~~l~~~~i~~iEqP~~~-~d~~~~~~l~~~~~-iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit 283 (383)
T 3i4k_A 206 DRRTALHYLPILAEAGVELFEQPTPA-DDLETLREITRRTN-VSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLL 283 (383)
T ss_dssp CHHHHHHHHHHHHHTTCCEEESCSCT-TCHHHHHHHHHHHC-CEEEESTTCSSHHHHHHHHHHTCCSEEEECTTTTTSHH
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCh-hhHHHHHHHHhhCC-CCEEecCccCCHHHHHHHHHcCCCCEEEEcccccCCHH
Confidence 34555554433122445455533332 23566677776543 67654333345667778888775 55568986643343
Q ss_pred HHH
Q 043479 84 NVW 86 (534)
Q Consensus 84 ~aI 86 (534)
.++
T Consensus 284 ~~~ 286 (383)
T 3i4k_A 284 ESK 286 (383)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 453
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.18 E-value=2.7e+02 Score=20.79 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=32.3
Q ss_pred CccCCchhhHHHHHHHHHhccCCCcHHHHHHHcCCCCCCHHHHHHHH
Q 043479 161 KVAWTDSLHNRFLQAIRHIGLEKAVPKKILEFMNVPGLTRENVASHL 207 (534)
Q Consensus 161 rv~Wt~eLh~RFleaLe~LGlekAvpK~ILe~M~V~GLT~~tVaSHL 207 (534)
...|+.+=+..|.+++..+| +. -..|++.| ++-|...|..|.
T Consensus 12 ~~~WT~eE~~~F~~~~~~~g--k~-w~~Ia~~l--~~rt~~~~v~~Y 53 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHP--KN-FGLIASYL--ERKSVPDCVLYY 53 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHST--TC-HHHHHHHC--TTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC--CC-HHHHHHHc--CCCCHHHHHHHH
Confidence 45799999999999999998 32 57888775 466777766553
No 454
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=20.17 E-value=1e+02 Score=28.51 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=38.7
Q ss_pred ecCHHHHHHHHHhc-CCceEEEEeCCCC---CCCHH-HHHHHHHhhCCCCcEEEEecCCCHHHHHH
Q 043479 3 VTRPVEALATVRIQ-RDIDLVVTDLHMP---EMNGI-ELQKEINEEFTHLPVMVMSSDDRESVIMK 63 (534)
Q Consensus 3 ass~~EALe~L~~~-~~pDLVLLDi~mP---dmdGl-eLL~~Lr~~~p~ipVIVLSs~~d~~~~~~ 63 (534)
+.++...++.+... ..+++||+|=-.. +++-. +.++.+....++.++|++|+.-+.+...+
T Consensus 160 v~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~ 225 (235)
T 3llm_A 160 FCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCE 225 (235)
T ss_dssp EEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHH
T ss_pred EECHHHHHHHHHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHH
Confidence 34455555666543 5689999995322 12222 35666666778899999999877665433
Done!